Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:32:39 2011 Seq name: gi|308151777|gb|GL476245.1| Enterococcus faecalis TX4000 genomic scaffold Scfld4, whole genome shotgun sequence Length of sequence - 75018 bp Number of predicted genes - 55, with homology - 53 Number of transcription units - 24, operones - 15 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 3.8 1 1 Op 1 11/0.000 + CDS 199 - 759 528 ## COG0732 Restriction endonuclease S subunits 2 1 Op 2 . + CDS 772 - 3921 3007 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Term 4871 - 4932 3.6 3 2 Op 1 . - CDS 4952 - 5554 694 ## COG2364 Predicted membrane protein - Prom 5578 - 5637 3.2 - Term 5583 - 5632 11.5 4 2 Op 2 . - CDS 5639 - 6418 250 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 6448 - 6507 2.3 + Prom 6616 - 6675 6.0 5 3 Op 1 . + CDS 6708 - 6788 57 ## 6 3 Op 2 7/0.000 + CDS 6835 - 8103 1440 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 7 3 Op 3 5/0.000 + CDS 8175 - 9893 2368 ## COG0442 Prolyl-tRNA synthetase + Term 9955 - 10004 14.1 + Prom 10000 - 10059 7.9 8 4 Tu 1 . + CDS 10144 - 14499 4537 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 14521 - 14560 5.0 + Prom 14614 - 14673 9.7 9 5 Op 1 . + CDS 14711 - 16168 1550 ## COG0531 Amino acid transporters + Term 16213 - 16261 12.5 + Prom 16226 - 16285 5.5 10 5 Op 2 . + CDS 16387 - 17763 1364 ## EF2376 hypothetical protein + Term 17816 - 17865 14.1 + Prom 17879 - 17938 5.3 11 6 Op 1 2/0.000 + CDS 17962 - 20733 2533 ## COG1199 Rad3-related DNA helicases + Prom 20737 - 20796 5.7 12 6 Op 2 5/0.000 + CDS 20821 - 21327 527 ## COG5353 Uncharacterized protein conserved in bacteria 13 6 Op 3 5/0.000 + CDS 21366 - 22565 1194 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 14 6 Op 4 . + CDS 22600 - 23934 1565 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 23943 - 23997 12.3 - Term 23940 - 23975 5.1 15 7 Tu 1 . - CDS 23982 - 24941 1059 ## COG0673 Predicted dehydrogenases and related proteins - Prom 24984 - 25043 8.7 + Prom 24946 - 25005 7.1 16 8 Op 1 . + CDS 25114 - 25632 662 ## EF2369 hypothetical protein 17 8 Op 2 . + CDS 25653 - 25871 212 ## + Prom 25892 - 25951 1.9 18 9 Op 1 . + CDS 25971 - 26612 790 ## COG1705 Muramidase (flagellum-specific) 19 9 Op 2 . + CDS 26632 - 27318 1013 ## EF2366 hypothetical protein + Term 27323 - 27362 8.3 + Prom 27567 - 27626 5.3 20 10 Op 1 7/0.000 + CDS 27717 - 28298 865 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 21 10 Op 2 . + CDS 28301 - 29620 432 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 29639 - 29672 -0.9 + Prom 29812 - 29871 6.3 22 11 Op 1 3/0.000 + CDS 29948 - 31063 1266 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 23 11 Op 2 . + CDS 31106 - 32401 1714 ## COG0015 Adenylosuccinate lyase + Term 32405 - 32450 9.9 + Prom 32481 - 32540 8.9 24 12 Tu 1 . + CDS 32585 - 32956 435 ## COG2259 Predicted membrane protein + Term 33009 - 33050 3.3 + Prom 33138 - 33197 9.0 25 13 Tu 1 . + CDS 33226 - 35832 3542 ## COG0542 ATPases with chaperone activity, ATP-binding subunit + Term 35839 - 35872 5.4 - Term 35816 - 35870 17.5 26 14 Op 1 . - CDS 35871 - 36350 569 ## COG3613 Nucleoside 2-deoxyribosyltransferase 27 14 Op 2 . - CDS 36374 - 37594 1163 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Prom 37741 - 37800 7.0 + Prom 37664 - 37723 7.0 28 15 Tu 1 . + CDS 37841 - 39676 2110 ## COG0481 Membrane GTPase LepA + Term 39689 - 39724 4.2 + Prom 39710 - 39769 10.0 29 16 Op 1 8/0.000 + CDS 39864 - 40880 847 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 40883 - 40930 5.1 + Prom 40946 - 41005 6.4 30 16 Op 2 8/0.000 + CDS 41039 - 42073 870 ## COG0524 Sugar kinases, ribokinase family 31 16 Op 3 1/0.000 + CDS 42084 - 44000 1474 ## COG3962 Acetolactate synthase 32 16 Op 4 5/0.000 + CDS 44039 - 44878 799 ## COG3718 Uncharacterized enzyme involved in inositol metabolism 33 16 Op 5 . + CDS 44918 - 46375 1300 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 46381 - 46422 8.0 + Prom 46463 - 46522 10.7 34 17 Op 1 9/0.000 + CDS 46549 - 47556 892 ## COG0673 Predicted dehydrogenases and related proteins 35 17 Op 2 16/0.000 + CDS 47580 - 48599 1073 ## COG0673 Predicted dehydrogenases and related proteins 36 17 Op 3 . + CDS 48621 - 49511 1020 ## COG1082 Sugar phosphate isomerases/epimerases 37 17 Op 4 . + CDS 49535 - 51130 1446 ## COG4146 Predicted symporter 38 17 Op 5 . + CDS 51158 - 51463 410 ## gi|256853690|ref|ZP_05559055.1| conserved hypothetical protein 39 17 Op 6 . + CDS 51474 - 51632 56 ## gi|315170354|gb|EFU14371.1| hypothetical protein HMPREF9518_02075 40 17 Op 7 . + CDS 51671 - 52504 964 ## EF2239 hypothetical protein + Term 52509 - 52552 6.3 - Term 52497 - 52540 2.5 41 18 Tu 1 . - CDS 52545 - 53606 1088 ## COG1609 Transcriptional regulators - Prom 53626 - 53685 9.2 42 19 Op 1 . + CDS 53783 - 54169 318 ## EF2237 putative lipoprotein 43 19 Op 2 . + CDS 54150 - 55949 1790 ## COG4289 Uncharacterized protein conserved in bacteria 44 19 Op 3 . + CDS 55965 - 57107 1177 ## EF2235 glucuronyl hydrolase, putative 45 19 Op 4 35/0.000 + CDS 57157 - 58434 1663 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 58476 - 58525 -0.0 + Prom 58444 - 58503 7.1 46 19 Op 5 38/0.000 + CDS 58585 - 59487 648 ## COG1175 ABC-type sugar transport systems, permease components 47 19 Op 6 . + CDS 59499 - 60377 905 ## COG0395 ABC-type sugar transport system, permease component 48 19 Op 7 . + CDS 60390 - 61061 511 ## EF2231 hypothetical protein + Term 61073 - 61131 6.3 + Prom 61071 - 61130 3.4 49 20 Op 1 . + CDS 61162 - 62130 989 ## EF2230 hypothetical protein 50 20 Op 2 . + CDS 62141 - 65920 4058 ## EF2229 hypothetical protein + Term 65930 - 65996 12.7 + Prom 65994 - 66053 8.2 51 21 Tu 1 . + CDS 66082 - 67086 1447 ## COG0180 Tryptophanyl-tRNA synthetase + Term 67096 - 67148 13.3 - Term 67084 - 67136 9.5 52 22 Op 1 35/0.000 - CDS 67140 - 68873 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 68910 - 68969 4.0 53 22 Op 2 . - CDS 68971 - 70698 191 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 70738 - 70797 4.2 + Prom 70618 - 70677 3.0 54 23 Tu 1 . + CDS 70813 - 71580 871 ## EF2225 MerR family transcriptional regulator + Term 71632 - 71680 -0.5 + Prom 71949 - 72008 3.9 55 24 Tu 1 . + CDS 72054 - 75018 3053 ## EF2224 cell wall surface anchor family protein Predicted protein(s) >gi|308151777|gb|GL476245.1| GENE 1 199 - 759 528 186 aa, chain + ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 1 186 211 407 407 110 37.0 1e-24 MFPKNGAKVPEIRFPGFTGDWEQCKLGDIAKMYQPPTISGSELLDTGYPVFGANGYIGFY SKSNHLEDQVTISARGEGTGTPSYVKAPVWITGNSMVINVEDFDINKKFLYAMLLSYSLK KYITGGAQPQLTRDVLLKVPIIIPSYNEQFKIGTFFKQLDDTIALQQRKLDLLKETKKGF LQKMFV >gi|308151777|gb|GL476245.1| GENE 2 772 - 3921 3007 1049 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 6 1045 6 990 992 540 34.0 1e-153 MKISHREEAEVEEQLIRVLGEGHNQWTYRPDLKSEEDLWVNLRQKIISNNQAELNDSPLT DKEFETIKTELLLRTKTPFDAAKWLKGENGMARITIEREDSQLGSVSLILYSNQDIGGGI STYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELKQVTAKDGVYQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKFLFSWRTKDNEKVENLYEFCKQV LNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAIQALFIAANKHQSGYVWHATGSGKT LTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTTEFTKFASEFNTGISSGNAKANSLIVG TGSAKELSETLLADANANVVIITTRQKLDAALKYAKKQEEKKGTNRFQKLMGQHIVFVVD ECHRALSAENMEEIKKMFPKSTWFGFTGTLIFPENRKQAKGQLARTTHDQYGEVLHTYTI KNALEDGSVLGFQVEHENTVEPTSLENKIYRKLKEVETYAEYSSEQINRMIDQMESIKKE SYLDPAVFEVDEHIQKVIHKMFRPDNAYTKFDFRNGRPTKSAILTTSSIDMAKKYYRAIK EMTKEPEWLTKEFPNQPIREGRTMEDPDFPRIAITYSLEENSRDSSVQQEEMQKIIEEYN QYYDTSWSLADIERYNGDINNRLARKRAEFKQFGKQIDLVIVVDRLLTGFDAPTIQTLFV DRNLEYAGLIQAFSRTNRTYPDKTKGLIVTFRKPATMEKNVEDATKLYSEAKEESGLICP SYQESKKRFKQAYGKLKEVSSMESIDEHTPLEIRIEYVKAFQELNRAYESLVTYDDYNDD IVQSSTLNNQIQLLEEQIGVYETVKGSLIEEEPEKEGEDFSTIEFYSENTTKLYDIDSTY IDQLLGTYAANSSDARDEIEKALAKLNKTEGVKEVYRQILNAFDVGTLDSNEDIFVIKRR YFTQASDDLIHVFSNEWFVSEKELHASNLQYMPGEDPIPNMKAIINSKDYEGYKANHPEA KPFKYPQEMKRAWRKMLDDELIPLENELR >gi|308151777|gb|GL476245.1| GENE 3 4952 - 5554 694 200 aa, chain - ## HITS:1 COG:HI0522 KEGG:ns NR:ns ## COG: HI0522 COG2364 # Protein_GI_number: 16272466 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 5 198 24 211 218 80 26.0 2e-15 MKLVKNVLLILIGLVIIGIGASTLRVAGLGVDPFTAMNIGLSSMFGMQLGIFQIIVNAFI LFYVYLKNKKAIGLGTILNMLLVGILIQQISTWLQPYANSLGGSTIGKLLSLFVGVLIFT FGCALYMATDQGESPYDAIAPTICQQTNKPYASVRKAQDLLVLLIGFIAGGPIGIGTIIC AFGAGPLISFWNKLLQPLVK >gi|308151777|gb|GL476245.1| GENE 4 5639 - 6418 250 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 246 4 238 242 100 32 2e-20 MYGELHGKVAIVTGAATGLGLFITLRYILEGMNVVADYVGELPKEFEDVQAKHADRVIFV KADVSNEEDIKALAETALKEFGHVDIWVNNAGVEASFPTIDMPLKEWQRVIDVNLNGVFL ASREALRIFRDQKIKGSIINMSSVHQRIPWPTFAHYAASKGATEMFTKTIALEYAEYGIR ANCIAPGAINTPINAEKFSDPEQLKQTTSMVPMGIIGKPNQVAAAAAWLASDESSYVTGT TLFVDGGMSLYPSFQHGAG >gi|308151777|gb|GL476245.1| GENE 5 6708 - 6788 57 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIVLSKQLHWFIGKGTEQVLRDFPM >gi|308151777|gb|GL476245.1| GENE 6 6835 - 8103 1440 422 aa, chain + ## HITS:1 COG:SP0263 KEGG:ns NR:ns ## COG: SP0263 COG0750 # Protein_GI_number: 15900197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 422 1 418 419 413 51.0 1e-115 MKTIITFIIVFGILVLVHEFGHFYFAKRAGILVREFAIGMGPKIFAHRGKDGTTYTIRLL PIGGYVRMAGMGEDMTEITPGMPLSVELNAVGNVVKINTSKKVQLPHSIPMEVVDFDLEK ELFIKGYVNGNEEEETVYKVDHDATIIESDATEVRIAPLDVQFQSAKLSQRILTNFAGPM NNFILGFILFTLAVFLQGGVTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKIKKYE DFTTIVQKNPEKPLTFVVERNGKEEQLTVTPEKQKVEKQTIGKVGVYPYMKTDLPSKLMG GIQDTLNSTTQIFKALGSLFTGFSLNKLGGPVMMFKLSEEASNAGVSTVVFLMAMLSMNL GIINLLPIPALDGGKIVLNIIEGVRGKPISPEKEGIITLIGFGFVMVLMVLVTWNDIQRF FF >gi|308151777|gb|GL476245.1| GENE 7 8175 - 9893 2368 572 aa, chain + ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 564 1 564 568 727 62.0 0 MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLY TPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDV NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVAEDVKIYADLAVQDLANAIVGA NEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSD AMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNV KDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVE VKIKRTGEMLEVRKEELESTLSILMNTTSEVE >gi|308151777|gb|GL476245.1| GENE 8 10144 - 14499 4537 1451 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 3 1448 6 1444 1444 1832 61.0 0 MTEKARDLFDKLMTQIQLDDTAKEHPLIQNGRIDKVIVHQQSRLWEFHLSFDELMPVMLY QTFMQQLELAFQQIAQVSVQITTNQTTFTEEQLTDYWQLALLNSQCNTPLVQKVLKTQTP QFEDRKIILPVDNEAVIPYLKQQYLPIIEELYFSYGFPKFHIEPKMDQQQAAEVLKKFEE QKLEQAAAFQQQAAESLVKHEQMKKEKQQQAPAFDGPIRLGRNIPNDEPIMPMGNILEEE RRITIEGFIFDKEVRELRSKRKILILKITDYTSSFVVKKFSNGEKDEQVFDAIQPQSWIR VRGSVQEDTFMRDLVMNAQDLMEVAHAPRKDYAPEGEKRVELHMHSNMSTMDATNKVGDL VAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILYGVEANIVDDGVPIAYNEEHIE LTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVIETFEQFIDPGHPLSQTTINLTGI TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE LSRFLYPHFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDD LNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLRE GLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEE IISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKVHFRTTD EMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRAR ELYGDPLPEIVEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVGSRGSVGSSFVA TMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFET FLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER DHNLHLRGAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQEAEWKT THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIEPKTIPTDDPEVMRIFEGPDVLGVD AEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDVWLGNAEELIRRG EANLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRDTYLNAMKENNV PDWYIDSCSKIKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQ GKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEG DTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATRGKVSKTLIEYMNENGVLKDLP DENQLSLFDML >gi|308151777|gb|GL476245.1| GENE 9 14711 - 16168 1550 485 aa, chain + ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 477 1 477 488 682 76.0 0 MDKKQLRWFTVGLIAFNMVWGLGNVVNNYAQQGISVVTSWLLILVLYFIPYALIVGQLGS TFKDSNGGVSSWVQNTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIALGWAVQGNGNLVN TMPIVTVSFISLIIFLVFLLLSTKGLTTLKVIGGLAGTAMFVMSILFILLAVGAPFINST VEFATPNMSQVSTYIPKFDFSYFTTVSMLVFAVGGAEKISPYVNATKNPAKEFPKGMIFL AAMVGLSAVLGSFAMGMLFSSDNIPKDLMANGAYSAFQKLGAYYGVGNLLMIVYALTNTV GQVAALAFSIDAPLKILLAEADPEFVPSWLRKRTKKGTLINGYLLTGILVSIIIALPMFG LKDMNEVVKWLTNLNSVVMPMRYLWVFFAYMLLNKAYKQFNSEYKFVKNPKIGFVFGLWC FLFTAFACILGMVPKFEYASDPQGWLFQLASNIVTPIVLILLGMILPAIARREKKDTILP IDSAE >gi|308151777|gb|GL476245.1| GENE 10 16387 - 17763 1364 458 aa, chain + ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 458 1 437 437 692 94.0 0 MTKTLETQPEEKTVFLCKETNPDFLGREIYADNVETPYNFYLIRKLYLAKEYQNLAEGEQ FFEALCESWDESEQFEELIVKKIYVYVETELMYYTVYFGSFEPTTRDLRSALKQWMYEIP TTKNKKTVRMNETNVQVVPQENQLTELAGEIAVLREMLTLLKENLASLNEAVNQTRNPVI SRQIKTIHLKRASPVIAAEQASLKVSEDTNLEQPDVNLSPDNRENQEGETTVATSEAVLP VNKLALEEPAKEPVLSETVPIKEAQPEKKQENQQSTAAKPLFTFPQETEKSSLNSVNKSA EKEEEQKPEKEAVSMESEKENSSSRTIPADFQRQLDELEEEIYRRFMSRQLEDTDGNQAV PKITIEKRQLEAQMFEAKAFSQSFKQVQKKKAGDVRICNQLSCMKLEKGLDKFLDEVTEY VEKRTLFNKKVRCPLPVIRELEGYGQLNQYMQKILDCY >gi|308151777|gb|GL476245.1| GENE 11 17962 - 20733 2533 923 aa, chain + ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 921 36 716 716 310 30.0 7e-84 MKDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTG ISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTV ELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK IAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQVVSGIALRKKEVPLFEETFYQTSTY PKTKKAKEKLFGERFAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSY LATPEKPVIISTVSIVLQNQLVEKDLPLVNQICQGKLRGIVIKSHRHYLDLQRFKATLNQ PTPQKQYALYQMGVLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVD FLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESPWLIIDEAHHLPDIASRMASERVN SVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLF SKTQKRIDHQELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSL ADRIVFVRLFQFFDEIERIHHCFTIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPE TKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVA IQNASSYEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQG ISGSREKILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYA YLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP KGLSVKEAPMPEILEELKEFLNK >gi|308151777|gb|GL476245.1| GENE 12 20821 - 21327 527 168 aa, chain + ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 32 160 35 165 173 75 36.0 4e-14 MEELEEKKEKKRITVLLTLLAILLAILVTIIIFFVRTNQPMAQAKKEATAIAKTSANLET VDKFYWFTRKNTYFTLTGKNDKGTEIIVIVPKSGEKVTVLNQKDGQTEQQITDIVAKAHP DESVMKATLGLYDKRPAWEVVTENDQGVLTYYLMSFDKGEEINVVKDI >gi|308151777|gb|GL476245.1| GENE 13 21366 - 22565 1194 399 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 390 395 527 67.0 1e-149 MNVSNRAQQLTPSVTLAAAAKAKALKAKGVDVLSLTVGEPDFVTPKNIQKAAIASIEDGR ASYYTPSGGIPELKQAIVSYVEREYQLRYQPKQVIVTDGAKYALYLLFQAILNVGDEVII PVPYWVSYGEQVKLAEGKPVFVSSTQEQSFKVSVAQLEAVRTDKTKAIILNSPSNPTGII YTEEELRQIGEWAVAHNILIIADDIYGRLVYNGHRFTPIATISEAIRQQTIIINGVSKTY AMTGWRIGFAVGDEKIIQAMTQLASQSTSNPVAVSQYAAIEALTGEQSTVEDMRQAFEKR LNHIYPKVAALPGVSLIKPEGAFYLFPNVKKTLEICGYDNVTNWVEDLLQEAHVALVTGE GFGAPEHVRMSYATDLMTLEKAIERMNDFIEKKRIQHNA >gi|308151777|gb|GL476245.1| GENE 14 22600 - 23934 1565 444 aa, chain + ## HITS:1 COG:L0345 KEGG:ns NR:ns ## COG: L0345 COG0017 # Protein_GI_number: 15673810 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Lactococcus lactis # 4 444 5 447 447 666 72.0 0 MEQIQIIDSNKHVGETVKIGAWIANKRSSGKIAFLQLRDGTAFFQGVVFKPNFIEAFGEE AGTEKFQEIKHLSQETSVMVTGVIKEDSRSKFGYEMDITDLEVVGASEDYPITPKEHGTD FLMDHRHLWLRSSKQHAIMLVRNEIIRATYEFFNEQGFIKIDSPILTGSAPEGTTELFET DYFGQPAFLSQTGQLYAEAGAMAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAYTTH EESLDIQEAYVKHLIKSVLKNQQYPLDVLERDTALLEKYVLEPFKRITYDDAIELLQKEE ANNDYDHIEWGEDFGSPHETFISNYYGVPTFILNYPKAIKAFYMKPHPTREDVVICADLI APEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAV TFITGNEHIREAIPFPRMLNRIYP >gi|308151777|gb|GL476245.1| GENE 15 23982 - 24941 1059 319 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 7 317 5 315 322 319 49.0 5e-87 MTKKLYQWGIVGLGGIAHEFASTFKQETSQLAAVASRTLSKAEQFAADYSIPKAYGSYEE LLADETIDVVYIAVPNKQHAEHILKALQAGKHVLCEKAITMNAAELKQALAVAEKNDLIL AEAMTIFNMPLYDELRRLMDAGKFGQLKMIQAPFGSYKEPDPKNRFFNPDLAGGALLDIG TYAVSFARWFLSSQPDVLASSMVPFSTGVDEQSVTLLRNKENELATISLTFQAKMPKQGI VAFEDAYITITDYPRAHEAIVHYNDGTVETIVSGYSAEAMNYEIYNMVEAIKGTQPNRSL FFTTEVIDILDQMQKLWQN >gi|308151777|gb|GL476245.1| GENE 16 25114 - 25632 662 172 aa, chain + ## HITS:1 COG:no KEGG:EF2369 NR:ns ## KEGG: EF2369 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 313 100.0 1e-84 MHQVYVDIIVDAIIEQYQTEENFYSAYQIQAADWQAWKEGQFGLDNEVMQKIKNLFTDYE WMLTQKILRQTILFPEKRNLAVSEYKRLKTTIAKKWLQSDLGVVELIPNNKQEQEIAAGY IDLKVTLAYGEWGFDDIITFRLPATIQRQLEGSKVELLDWVNENLMDTYVGE >gi|308151777|gb|GL476245.1| GENE 17 25653 - 25871 212 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYTIAGILSVIIMFGAVIFVFFGKKPVEESVHTSTETTVKSSTKIFESSTVSSTATTES STEITSVSSDES >gi|308151777|gb|GL476245.1| GENE 18 25971 - 26612 790 213 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 12 213 7 205 209 172 45.0 4e-43 MKWGINEVSNYQKKRKKQLNLPKLFLGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENI SKEEFVAEITPYARELQESYGVLPSIIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPK VNLETKEYVNEVWITIQGDFRVYDNWEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEA AQALQDAGYATDPTYADKIIHVIEEYNLNKYDR >gi|308151777|gb|GL476245.1| GENE 19 26632 - 27318 1013 228 aa, chain + ## HITS:1 COG:no KEGG:EF2366 NR:ns ## KEGG: EF2366 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 228 1 228 228 405 100.0 1e-111 MSEKWIPEIMTPLKQDIVKMPEIIRQASGIKIFGRKIKSIIFTTDIAIIRNTDAQAVIAV YPFTPHPAITKGIIEAADIPVFSGVGGGLTQGMRSAYMSLFAEAQGSMGVVLNGPTPIET IKMVDEAIDIPIISTVTSIHTPIDEKLAAGVDMINISAGKDTAATVRYFRGKYPELPIIA TGGPTESSIHETIIAGANAITYTPPSNGELFSKKMKKYREQEKATDEE >gi|308151777|gb|GL476245.1| GENE 20 27717 - 28298 865 193 aa, chain + ## HITS:1 COG:SPy1136 KEGG:ns NR:ns ## COG: SPy1136 COG0503 # Protein_GI_number: 15675113 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 193 1 193 193 242 68.0 3e-64 MKELVERIKNDGRVLGEGVLKVDSFITHQVDPELMEAMGNRFAEVFAEAGITKVITIEAS GIAPALYAAQKLGVPMIFARKAKSLTMDEELLTASVYSFTKQVTSQISISRKFLSDADKV LIIDDFLANGQAAKGLVELCQQAGAKVEGIGIVIEKSFQDGRQLLEDMGLNVVSLARIAS LSEGTVTFLEEDA >gi|308151777|gb|GL476245.1| GENE 21 28301 - 29620 432 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 18 438 15 428 447 171 27 1e-41 METKQLNTPQQTETPNGKAAVLGLQHLLAMYAGAVAVPLLIGTGLNFDSQQMTYLISIDI FMCGVATLLQLTVNKFFGIGLPVVLGCAIQAVAPLIMIGTNKGVGAIYGSIIASGIFVVL IAGFFSKIKRLFPPLVTGTVITVIGLTLIPVAVEKMGGGLATDKSFGDPKNLLLAFVTIA LIIVVQVWGRGFIKSIAVLIGLVGGTILAAFLGLVDLSPVGQATWFHFPQPFYFGKPTFD LSSIVLMIIISIVSMVESTGVYFALGDITGKKIGEDDLRRGYHAEGLAVILGGIFNTFPY TGFSQNVGLVQLSGIKTRRPIYFSAFFLIILGLLPKIGAMAQIIPEPVLGGGMLVMFGMV AVQGMRMLSKVDYSNDKNLLIIAISIGFGLGFNIMPTLFNKVPETVSMFTGNGIVMSSIT AIILNLLFNGLKETSESNE >gi|308151777|gb|GL476245.1| GENE 22 29948 - 31063 1266 371 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 20 370 19 373 374 356 47.0 4e-98 MNLDKPLLPGQVIGIIGGGHLAKMMALSAREMGFRVGVLDPQIDCPAAQVADWQLLGAYN DPEALEKLAKRAQVITYEFEHADVDALTAIQHLANIPQGTDILAITQDRLMEKSFLEDNN IVIAPYATIVSPTDIQEAIDGIGYPCILKNTRGEGRYVLHSTSDLAPSMNLLREGTCVLE AWIPYEKELSVLISGNGRGEFATFPVVETIKKERKLHETIAPARIDDEVSGELQRIAKVI AKAVGLVGTLSIEMFYTETGGIYVNKILPRPEDAGNFSIDACSFSQYDTHIRGLCNWPMP TIQLLSEAVTVNVFGNEAYETMDIINEHPDWHFHYYGHSEAKAQRAMGHITILTKEIDET LEEIKETKIWS >gi|308151777|gb|GL476245.1| GENE 23 31106 - 32401 1714 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 715 81.0 0 MIDRYTRPEMGAIWTDENRYKAWLEVEILADEAWAELGEIPKEDVQKIRENASFDVARIL EIEAETRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLLKQANDILRKDLQTF TEIVGAKAKEYKHTVMMGRTHGVHAEPTTFGLKLALWYSEMKRNIERFEHAAKGVEAGKI SGAVGTFANISPFVEEYVCEHLGIRAQEISTQVLPRDLHAEYVSAMALIATSIEKFATEI RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHVITAFENVSLWHE RDISHSSAERIIIPDTTILLNYMLNRFGNIVKNLTVFPENMKRNMDATYGLIYSQRVLLK LIDHGMTREEAYDLVQPKTAYAWDHQTAFRPLLDADEKITSVLSKEELDDAFDYHYHLKN VDTIFERVGLG >gi|308151777|gb|GL476245.1| GENE 24 32585 - 32956 435 123 aa, chain + ## HITS:1 COG:SA0890 KEGG:ns NR:ns ## COG: SA0890 COG2259 # Protein_GI_number: 15926624 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 117 4 115 118 73 41.0 1e-13 MDKQQRGIQVIRIWLGVTMLIHGVMKVTSLEDTLAFFASIGLPSLFVYGVAAIELIGGLF MIIGFLIPLVSVGFIAVLVGAIFSFGLASGFSGYEYELFLAITSLAILVSYADKKYLTLK LYF >gi|308151777|gb|GL476245.1| GENE 25 33226 - 35832 3542 868 aa, chain + ## HITS:1 COG:L166407 KEGG:ns NR:ns ## COG: L166407 COG0542 # Protein_GI_number: 15673507 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases with chaperone activity, ATP-binding subunit # Organism: Lactococcus lactis # 1 867 1 867 867 1225 74.0 0 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQPNHFGRNFYTDAGLDVDAFE REVDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLK NYRLTKYLMQQGITEKELRKNIEEMRGGDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKFRGEFEERLKAVLKEVKKSDGKIILFIDEIHNIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVKEPTVEDTISILRGLKERFE IHHGVNIHDNALVAAATLSDRYITDRFLPDKAIDLVDEASATIRVEMNSMPTELDQVTRR LMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAE IDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKNAKDNVKMVQESVTENEIA QVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYIGYE EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMT SNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDTILFTPLSLDNVKGII GKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVS GRVMPKTKVTISLLDNQLVFENEPIEEV >gi|308151777|gb|GL476245.1| GENE 26 35871 - 36350 569 159 aa, chain - ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 4 106 7 108 140 80 47.0 1e-15 MTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALAD TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNE VAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRLS >gi|308151777|gb|GL476245.1| GENE 27 36374 - 37594 1163 406 aa, chain - ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 15 406 7 386 386 184 32.0 3e-46 MDEQEFRKQLTLKPVEEEHIDQFNELLSYVFQVTEADIEESGFENKRAFIKSKQPILELS KVFGWFHENQLISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQTALEEM RQDKQWISYLFPYNIPYYRRKGWEIMSDKLSFKIRDTQLPKTVPVPGMIERLAVDHPDVF DVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPLGVLFYWVADEVFHI KEMFYLNQEARNGLWNFITAHFSMVYWVKGDIYKNEPLAFLLEDSQIKESIEPYYMARIV DVKAFLENFPFESTAKPFHFVVKDPVAEWNNGIFGLIWDENDQVTITDEPLGTAVHLDIQ TLTCLVMNYRRPSYLHRIERIDTDKETLNSLERIFPDQEAYFSDYF >gi|308151777|gb|GL476245.1| GENE 28 37841 - 39676 2110 611 aa, chain + ## HITS:1 COG:SPy1053 KEGG:ns NR:ns ## COG: SPy1053 COG0481 # Protein_GI_number: 15675045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pyogenes M1 GAS # 1 610 1 610 610 1018 82.0 0 MNNKEMKARQEKIRNFSIIAHIDHGKSTLADRILEKTNTVSSREMQDQLLDSMDLERERG ITIKLNAIELNYTAKDGETYTFHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQ TLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGIDASEAVLASAKAGIGIED ILEQVVEYVPAPSGDIEAPLKALIFDSIYDSYRGVVLNIRVIDGVVRPGDKIQMMSNGKT FDVTEVGVFSPKPIARDYLMVGDVGYITASIKTVQDTRVGDTVTLADNPAAEALPGYRKM NPMVYCGLYPIDTSRYNDLREALEKLQLNDAALQFEPETSQALGFGFRCGFLGLLHMDVV QERLEREFNLELITTAPSVIYHVNKTDGTTVVVDNPAEFPEPVTIESVEEPYVKAQIMVP NDYVGAVMELSQRKRGEFITMDYLDDYRVNVVYEIPLSEIVFDFFDKLKSSTKGYASLDY EMAGYRTSRLVKMDILLNAEKVDALSFIVHRDFAFERGKAIVEKLKKLIPRQQFEVPVQA AIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMA VLKMDEDDQKK >gi|308151777|gb|GL476245.1| GENE 29 39864 - 40880 847 338 aa, chain + ## HITS:1 COG:AGl777 KEGG:ns NR:ns ## COG: AGl777 COG1879 # Protein_GI_number: 15890504 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 300 1 302 340 129 29.0 1e-29 MAGTIKEIAEKAGVSRGTVDRALNNRGRINPEVAEKIKTIAKEMNYVPKKKKMAKEEPIK LGVVTQLAKSSFMIPIRSGLQAVIGDLKKRNIDCFLEEIDGVDEAAQLQALERLLGLGVK GIAIMPVDSVAIREKINQLTEQGIKVITFNSDIVGSKRQCFVGMDNFKSGKTAAGLLGML TKGEGDVLAITGYFGNSVNSLRVAGFVEELKQSFPQLKLTGVQSSFDSSDEVEKILSDTL ENYTNLKGVVVFSGGQAGIARVLKKRAGKDRPYVIIYDLTEKNIEMLKKNQVDFLIDQDG FTQGYRSLLLLANQLQNNKFMTEEMLFTDIIIKTKYNL >gi|308151777|gb|GL476245.1| GENE 30 41039 - 42073 870 344 aa, chain + ## HITS:1 COG:lin0403 KEGG:ns NR:ns ## COG: lin0403 COG0524 # Protein_GI_number: 16799480 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Listeria innocua # 10 330 9 321 325 311 49.0 1e-84 MSYISFDQSKEFDLVLLGRVAIDFNPAYNEQVKEEFKPLKNVHMFEKFVGGSPANISVGI TKHGMKAGFIGKVSDDQFGEYVIDYFNEQGIDTSQISKAQHGEKLGLTFTEMLSPKESSI LMYRNQAADLQLSVEDIDEDYLKRSKALLISGTALAESPSREAVLKAVMLAKKNNVKIIF DIDYREYNWKNVDEIAIYYSIVAKESDIIMGSREEFDLTERLIQPNMTDNESAVFWHNCG AQIVVIKHGMKGSTAYTADHQQFSIKPFPVEARKGFGGGDGYAAGFLYGLFEGWEIIDCL EFGSAEASMMVKSNNCSDSLPTTQEVKEFIKLEKEIYGEMIARI >gi|308151777|gb|GL476245.1| GENE 31 42084 - 44000 1474 638 aa, chain + ## HITS:1 COG:BH2318 KEGG:ns NR:ns ## COG: BH2318 COG3962 # Protein_GI_number: 15614881 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Bacillus halodurans # 3 638 2 637 637 881 65.0 0 MEKTIRLTTAQALLKFLNQQYISIDGKETPYVEGIFHVYGHGNVLGIGQALEQAPGHLKS YSGKNEQGMAHAAIAFARQSLRKKIFAVSASAGPGSANLLTAAGTAFANNIPVLFLPADT FATRQPDPVLQQLEHESSVTFSTNDAFQAVSRYWDRINRPEQLMSALLRAFEVMTNPATT GPATICLPQDVESEAYDYPVEFFRKRVHYIDRRMPTIRELETASHLIKDSKHPVIIVGGG CKYSEAGESLQKISQVHQIPLVETHAGKSTVSWEFENNLGGLGILGTSAANKAVQQADLI IGIGTRYTDFTTASKSIFNFEKSKMININVSRPQTYKMEAFQIVGDARATLEGILPMIEG YRTAYGEKITELKNEWVKERERLKTTHFKRKGFDPEIKNHFTQDILNDYADSLNTTLTQT EVFVHLNDFVEDDAIVIGSAGSLPGDMQRLWNPVKENTYHLEYGYSCMGYEIAGAMGVRL ANPDQEVYALVGDGSFLMLHSELVSALQYDKKINIVLFNNSGFGCINNLQMENGGVSQGT EFRNTKGEIMNINYAKIAEGYGAKAYQVHSIEELKQAIVDAKNQTQSTLIEINVLPKTMT AGYDGSWWNVGVAEVSEKPAIQEAYQVKKEKLATARKY >gi|308151777|gb|GL476245.1| GENE 32 44039 - 44878 799 279 aa, chain + ## HITS:1 COG:lin0402 KEGG:ns NR:ns ## COG: lin0402 COG3718 # Protein_GI_number: 16799479 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Listeria innocua # 1 274 1 273 273 367 63.0 1e-101 MKKTLKHQPLIKELAPGVRQVQNIRKNNTDLQYIEFQVLELDNGAMYQEAGNELEICIVV LTGKINVKVSDKWYENLGKRTSVFEKIPTDSIYIPAKTSFELIATSDTVRLALCYSPAKK TLPVHVITAEENTVEKRGIYQNKRLVHNILPDNVDTASSLLVVEVYTEGGNFSSYPPHKH DQENLPDESYLEETYYHELNPEQGFVFQRVYTEDGSIDETMTVEHQNVVEVPKGYHPVGV PDGYTSYYLNVMAGPERIWKFHNEKKHEWILNRNELTNN >gi|308151777|gb|GL476245.1| GENE 33 44918 - 46375 1300 485 aa, chain + ## HITS:1 COG:BS_iolA KEGG:ns NR:ns ## COG: BS_iolA COG1012 # Protein_GI_number: 16081027 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus subtilis # 3 485 5 487 487 681 66.0 0 MTRFLKNYIGGRWVTSAATEFEEVVNPATEEALVNVPLSSEAETAEAIRVADEAFQTWKK VSVPVRGRYLFKLHHLLMTNKEELARLITLENGKSLSESLGEVQRGIENVEHAAGITNLI MGDSLSTAATDIEITNYRYPIGVVGGITPFNFPMMVPFWIFPMALAAGNTVVLKPSEKTP LLMEKIVELIEEAGFPSGVFNVVYGAHDVVNTLLRDPLVKGISFVGSKNVGEYVYKEGTK NLKRVQALTGAKNHVIVLKDANLDRAVKDIIGGSFGSAGERCMAASVIVVEETIADQFVE KFKAAAQTIKIGNGLEEGVFLGPVIRKEAQQRTFDYIQKGIDEGADLLLDGRENIPEKGY FVGPTIFDRVTMDMKIWQDEIFAPVASIVRVKNLEAAVTLTNQSEFANGSCLYTSNASAI RYFRENVDAGMLGINLGVPAPMAWFAFSGWKHSFYGDLHANGKDSVEFYTHRKVVTARYA PSEIN >gi|308151777|gb|GL476245.1| GENE 34 46549 - 47556 892 335 aa, chain + ## HITS:1 COG:BS_iolG KEGG:ns NR:ns ## COG: BS_iolG COG0673 # Protein_GI_number: 16081021 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 1 333 1 336 344 364 51.0 1e-100 MKVKVGVIGTGAIGIEHINRINHKTQGAFVTAVSDINVEAASKIAEEIGAQFFKTGEELI ASEEVEVVVVTSWDPTHEKYVLEAIKHGKYVFCEKPLAMDAAGCRRIVDAEVAYGKKLVQ VGFMRRYDRGYIELKEAIESKQYGEALMLHCAHRNPSADENYKTPMAISNTAIHEIDVLR WLLAEDYASVQMILPKKTSHTHADLHDPQLLIFQTKSGVTIDLEIFVNCRFGYDIKCDVV FETAEVGMTDPAYTKIKAAEKNYTPISPDWQTRFLDAYDYEFKLWVDSIKNDKLVGPTAW DGYVAAITMMACHESRESGEKVMIEIDEQPALYTK >gi|308151777|gb|GL476245.1| GENE 35 47580 - 48599 1073 339 aa, chain + ## HITS:1 COG:BH2220 KEGG:ns NR:ns ## COG: BH2220 COG0673 # Protein_GI_number: 15614783 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 1 339 1 339 345 394 51.0 1e-110 MENIRVGIVGLGRLGKVHAKNLSSAVSGCELTAACSLVESELAFAQKELGVKCTFSSYEE MVQSAVIDAVFIVSPSGFHCEQVRLAMENGKHVFTEKPLGIEIEDIKKTQEVIEKYPEQV FMLGFMRRYDESYQYAKKMVEDGEIGEVTLIRCYGIDPSDGLESFVKFAMNNDSGGLFLD MAIHDIDLVRWFTGQEVEQVWAIGKNAAYPELDQVGELETGAAMMSLKDKTMALLVAGRN ATHGYHVETEIMGTKGMLRVAQVPEKNLVTVMNNQGVVRPCSQNFPERFREAFIREAQEF ISCIQEKRQPAVNAEDGLQSTKIALACQESFDTNRLVQL >gi|308151777|gb|GL476245.1| GENE 36 48621 - 49511 1020 296 aa, chain + ## HITS:1 COG:STM4424 KEGG:ns NR:ns ## COG: STM4424 COG1082 # Protein_GI_number: 16767670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Salmonella typhimurium LT2 # 5 290 13 298 306 308 50.0 7e-84 MANQIQLAIAPIAWTNDDMPELGSENTFEQCVSEMALAGFKGTEIGNKYPKDPQVLKQYL DIRGLKVASAWFSTFLTTKPFEETAEDFKKHRDFLHAMDAKVIVVAEQGHSIQGIMTAPV FNEKPIFSDEEWQKLAEGLEKLGDLAHEKGMEIVYHHHMGTGVQTTEEINRLMKMTNPTK VKLLFDTGHLVFSGEDPIAIYQRYQDRIKHIHFKDIRQQMAEEVRTEEDSFLKAVKKGVF TVPGDGMIDFKPIWSAIDESGYEGWIVVEAEQDPAKANPFEYAVKARNYIRKVTDL >gi|308151777|gb|GL476245.1| GENE 37 49535 - 51130 1446 531 aa, chain + ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 6 530 6 528 580 435 47.0 1e-122 MNLFSIISFLVIVICVWIFAYSRSRSVDTSGSEGFFMGGRSLTALPIAGTIIMTNLSTEQ IVGQNGQSYHAGMEVMAWEVTAAIAIVALAVIFLPKYFKYGINTVSDFIEIRYDTVTKRI ISILFIVTYMISFLPVVLYSGSLVFNKIFHIDELLGVEPIVAIILVAMVIGIVGILYLLI GGLSLSANSDSIYGVGLLVCGLLVPILGLMKLGDGSFIGGIEQVVENTPWLLNSVGAIDS AVVPWPTLFTGMLFNNLYFWCTNQMIVQKALSGKNLAEAQKGAFLVGIFKVFGALFLVFP GIVARNLFGDALMSNPDNAYPYLVTEVLPKMLFGIFAAVIFGAILSSFAGALNATSTLFS LDFYKPIINKKADDKQIARAGKTVTVIVGIISIIVAPFISFAPAGLYQFVQEFNGLYNMP LLVIILFAFYSKKATAFGAKMTIAIHIVLYALSKVFLKDIHFLYVLSLLFFLDILILIVV SKIKPDGEFVLNSFDTKVNIEPWKHTKLVASILVVVVILTYVAFSPIGFAR >gi|308151777|gb|GL476245.1| GENE 38 51158 - 51463 410 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256853690|ref|ZP_05559055.1| ## NR: gi|256853690|ref|ZP_05559055.1| conserved hypothetical protein [Enterococcus faecalis T8] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis PC1.1] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis TUSoD Ef11] conserved hypothetical protein [Enterococcus faecalis T8] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis PC1.1] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis TUSoD Ef11] # 1 101 1 101 101 174 100.0 1e-42 MSKNILIICETGISASLLVSKLLEAIREKELSYDLDYAPVCRIEEKLGYKEYDVLMLTPQ VARVKEKVEKYLEGCQGQVVFIDQEDFRYMNTEKILASIEK >gi|308151777|gb|GL476245.1| GENE 39 51474 - 51632 56 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315170354|gb|EFU14371.1| ## NR: gi|315170354|gb|EFU14371.1| hypothetical protein HMPREF9518_02075 [Enterococcus faecalis TX1342] # 7 52 1 46 46 70 97.0 3e-11 MGHQSTLVDVLLFYCVQKEQNQNLTFHSEYQMLFFYRNKAKVIILVKNRLIY >gi|308151777|gb|GL476245.1| GENE 40 51671 - 52504 964 277 aa, chain + ## HITS:1 COG:no KEGG:EF2239 NR:ns ## KEGG: EF2239 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 563 99.0 1e-159 MTCISLSILNQEQEVRKAKIDDSDSLKELTITGKDFVCLAARDCQLQDGDVIQVCLDTPN TYLMVKLDATLDSSLIYVPEQKWTFPITKNENAIEARAAYRFETKKPYISVRIATKEEIK SYRNWALNPHDLQHFTGAYPHASANVETRNDATFFACNAIDGTFANLYHGPYPYQSWGIN QQLDAALKIEFGREVLLDKVILTLRADFPHDNYWQQVTLKFSDGTHEVFKTVKTEQRQSF TFAKRAAEWVILTELIQADEPSPFPALTQIELFGQNK >gi|308151777|gb|GL476245.1| GENE 41 52545 - 53606 1088 353 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 347 1 331 335 195 35.0 1e-49 MATITDIAKVANVSISTVSRVLNYDPNLSVTEETKRKIFEAAETLNYTKYKTKNKNKQQE QLTPNLSVQTAPQEPSIAVVQWRSDDEELTDIYYMSIRLGAEKRAEELGYNILKVSQLEQ HNLQGIDGILAIGKFTQKTLQELQQLHPNLCVIGSNFPLEEFDSVNTDFYQATEIALTHL LELGHEKIAFIGAEESENMYGFRRYKTPTTNAYLDIMQHYHLFNEDYFILKENGMLDVKT GEQLTEEALEKWGNDLPTAILAYNDAFAIGVIHTLAAHGIKVPEEISVMGINDISISQYV SPPLSSVHAFTEEMGETGINLLHKRIQMPSIPRRVLLNTELVVRQSTTSPRQK >gi|308151777|gb|GL476245.1| GENE 42 53783 - 54169 318 128 aa, chain + ## HITS:1 COG:no KEGG:EF2237 NR:ns ## KEGG: EF2237 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 208 100.0 5e-53 MKRFSFFLLILLALTGCKSGEKEFDEESLQNLKETAQSYSETELQNGDVRLNEYISLKGE IVESDSRSSLIKKGDRFILKSGSSKYQVFNEQKKKLKIGDEVTVYGEYYGFLKGTLIESE ENHDSATN >gi|308151777|gb|GL476245.1| GENE 43 54150 - 55949 1790 599 aa, chain + ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 57 567 61 572 617 387 38.0 1e-107 MIQPRIRQNPFETYEEVAEGFEDLLAPLELFFDREYQGHLDLGTHGTVYSKGTRDAEAFL RPLWGLGPYVTQNESEYLNDFLTGIIEGTDPESSSYWGKTKDYDQLIVEMAALSTFLLLN KEKTWDQLTKEQQNNLHSWLIQANENIIPPNNWHFFRVLLNLAMKHCEMPYSKEQIAVDL AVIDRFYVGNGWYYDGVETQVDYYVSFAIHYYSLLYCRFAPEDTARVAIMKERATLFAQE FKYWFTQPGEAIPFGRSLTYRFAQVSFFSALVFADVEALPWGEIKGLISRHLHQWMNKDI FTTDGLLSVGYDYQNMVFAEGYNGPGSPYWAFKTFILLAVPKDHPYWQAETQPISFPEKH LPSPESRNYYQVNDAGTHGLMFPAGQFINYQAHAHDKYSKFVYSSHFGFSTIKSDYWYYE GAYDNCLALAEDDHYFRTKGLDDQYEILDDRIIHQWHPWSDVAIKTTIVPLEGQHLRIHE IETQRALVAYEGGFSIPLFDEKVTCVSDQMAEVKNAKGVSKVENINGFSEAAIIRTEPNT NLLYPLTELPYLKANLSKGKHLLISLVTGVLPNEQIEPVKVRLKENQLLVEEKVVILGN >gi|308151777|gb|GL476245.1| GENE 44 55965 - 57107 1177 380 aa, chain + ## HITS:1 COG:no KEGG:EF2235 NR:ns ## KEGG: EF2235 # Name: not_defined # Def: glucuronyl hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 380 1 380 380 754 99.0 0 MTENGQIEWLPKQISFALNKVRGNLETFKELVPPAASLNQIYYPEENIDWTASFWPGMLF LAKELTNSTEFDEVIATQMASFQHRLDEQIELETHDIGFLYILTAIADYQVNGHEASKEM ALQAADLLMKRYSPKAKIIQAWGNLDDPEQRGRMIIDCLMNLPLLYFAAKMTGKQEYYEA AYNHAKQTQKYIVRENHTTFHTYYFDTETGEALYGKTQQGYSDDSCWARGQAWGIYGFTL SYLYTGDSSFLETAKNVADYFIQELPEDKICYWDLIFNEGSEEERDSSSAAIAACGLLEL SRQLPLNDEKHGYYEKVALELLQALAEKYTTVLRPESNGLLLHGVYDKKTNTGVDECMIW GDYFYLEALTRLAKSWYSFW >gi|308151777|gb|GL476245.1| GENE 45 57157 - 58434 1663 425 aa, chain + ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 13 350 12 364 461 106 25.0 1e-22 MKFWKKGLTAAALLAVAAVTLTACGGSSEKKATEKSEDGKTKLTVTTWNYDTTPEFEKLF RAFEAENPDITIEPVDIASDDYDTKVTTMLSSGDTTDILTMKNLLSYSNYALRNQLVDLT DHVKDLDIAPAKASYEMYEIDGKTYAQPYRTDFWVLYYNKKMFDEAGIAYPDNLTWDEYE ALAKKLSKPEEQVYGAYQHTWRSTVQAIAAAQNNANLIEPKYNYMETYYDRALRMQKDQS QMDFGTAKSTKVTYQSQFENSKAAMMYMGSWYMGTLLTNIDDGKTNVEWGIAEIPQQEKG KATTFGSPTSFAINKNSKKQKAAQKFLDFASGKEGAKLLAEVGVVPSYKTDEIDKIYFAR KGMPSDEVSQKAFNPDTINLEFPSDKNGAAIDKVLQEEHDLIMVGDEKPKDGIANMEKRV KAEID >gi|308151777|gb|GL476245.1| GENE 46 58585 - 59487 648 300 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 21 295 17 291 296 220 45.0 3e-57 MEITSKTKTANKLRRKNTWTALSFIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPEFV GMKNFTKMIHDDTFWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFP YVTSLVAIAVVWNMLFHPTMGPINQFLKLFIENPPGWTSSSTWALPAIIIVSVWRFMGYY MILYLAGLQSVPRELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLV QVMTGGGPGRATNVLVYEIYNEAFVKFNFGYASAIAMVLFIIVLAITVAQFKWNQHQEKV >gi|308151777|gb|GL476245.1| GENE 47 59499 - 60377 905 292 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 27 291 17 281 282 211 42.0 9e-55 MEATFSKKENTRKAKTKKAEKVTPGGILVIILLTLLALITLVPFIWMVSASFKTNNEVFT IPIQWIPKSWHPENYSVIWERIPLLTFFKNTLFLSIVITIIQLFTSSFAAYGFSKMNFRG RDTLFITYIATIAIPWQSYMIPQFIMMRQLGLTDTLWSLVLLQAFNAFGVFLLKQYYSSI PDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTWNDYMGPFIYLSSTENKT IQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVEGIATSGMKN >gi|308151777|gb|GL476245.1| GENE 48 60390 - 61061 511 223 aa, chain + ## HITS:1 COG:no KEGG:EF2231 NR:ns ## KEGG: EF2231 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 223 1 223 223 367 99.0 1e-100 MFTKQTFDNNIYMKIFRWLYILFIGNLGLLLVNIPFFIAVISLDIDPRNLPLFVVTLLPM GAGMIALLGLIDTFKEEKELDPFKTFFQKFRQFGLRGFLISLLGLGSSIISVTDIFFFAK TTIGKWFIPLMVLLLIFGLAIMLNAWYFQVRNPQASFKDVFRISIYYGLRKWYVSCLNVF LLFSMFAMMFLKPQFGFVVTPVLFLGIIYLNTGKLHEKQKKNK >gi|308151777|gb|GL476245.1| GENE 49 61162 - 62130 989 322 aa, chain + ## HITS:1 COG:no KEGG:EF2230 NR:ns ## KEGG: EF2230 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 322 1 322 322 518 98.0 1e-145 MKKKIIILSSFLIGAIFVLVIFTTSQQSMINNEAIQVEELIVYGDKNMNRVAKQFSDQNN LTSFGKNFWRKTYHGKSPTQELLKVATEDLVQHKMIKQLATELEIVHSQTFGQEKKEWQD QKSSLTLWQFLDAKDQQLQDQIKEKLMEKEKPTQKELRQAFEQLDDKYKKTDYFVEAIEI PTFSGKQAELEKIAEAISPNLSYEETLLEWQNKLPNLVIESYQLKSAEIQKEDIYSLSVG EILSEKAVGTVVKGYHENQYFYIFNKEGGQLLQFEEAPQFGKNAYINTRYKEKLATYQQA TKVDLLEKDREKFFQNYQNKNS >gi|308151777|gb|GL476245.1| GENE 50 62141 - 65920 4058 1259 aa, chain + ## HITS:1 COG:no KEGG:EF2229 NR:ns ## KEGG: EF2229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1259 1 1259 1259 2345 98.0 0 MRKKAYFKSVTIFLSILLVFSQLQLFSLPAYGETVSDQPLLFRSVGVAQNGTTYYVDGEG GNNANDGQSPASAWRDFEKVNQTEFQPGDHLLLNAQSTWNNQLLHPKGNGTAAQKIVIDF YDTNDKGETIFETTRRPIINGGGTYSTGTFKRAISGAVQLVNQEYWDISNLEVTNTPELD NLEGYKKPGDAQRAGILVLGYEQNRTFNSVTIRNNYVHDVQTEYYLNLSRNTATKRLKAV GGIIVLGSWFDENGNVVTAANDHRTTTGFNDILIENNVIQRVGLEGIRTKADSDTSRGNT FYKTFSNITIRNNYLEDIAGDGIVLSEAKSGGVVEGNVAVRMCNADYGTQNYAGVWAMSV DDGLFQYNEVYGIKYGFNDAEAYDVDMQSNNVIYQYNYSHHNTGGFLLLMSDQKNSVIRY NISANDGGGNRGTGKDNPGGAGGYNYKEQSIFHYWVKNDGAAMPTIHNNTIYIGDGISTS LFGEGNSSDNSGTVANFYNNILYKEGTGQLKFLSNYPTNGTQPIERKMVDNPEKYFKNNV IWPKEIATEKSGATVEKLVSSGNIFEKPQLEITDNPEKVKELAEQEFTTLKPTKDNVVEF TSKERLRQRAQMFQLKETSPAIGKGLSEVNSAAEDFFGNSLKNKVLDIGAQQASTIEKSI RYQNQVLEISSATGVYPNLPEQVELTYEEVVNEEVVATGKKEFKLQWEAIPQEKINTAGT IEVAATVIGLPIDAVKVTAKVSFEGELGEGKDTVKLKTAQTAYVQKSDGNRAYSAIAGGT AAISSGDAYKYPYGVNYTGNYALKLKNASSAGYNRRIYVEIDTQELKNYQSLKSANLELN VMRYDAWNGAGNTNDERLKNTQFQVDVYGTDTNWMSNTITWNNGPNNLNVPNEEFIARQS FTNSSIMNNQNTISIDISNYLRKLIQSGEKIPAKLSFLLAITDSRLPGYDSDNAGFDAFS KEGAQKAYQDFLAGKLTLPTGQQLTEDSLAPKIVLSNVFEVKHESIEVTTEAGQAPKLPE KTTIFYSDGSQREVTVNWSEVPASSYQKEGTFTVVGRAAGVSMPIIANVKVTAKHIVGFK ELPTLDRLTGTSRGELNLPTEVIAKLDDGSETKLKVISWDDDVSNYSPSSPPGTYQFPAA VEEKIGIANPDERKIFQVVQTHAIPERIQFATETATIKSGENYQIQSKVIGQAPHTETDA WSSQVTYELVTPDDGNTVSVDENGLIRTEATTAAGNYQIKVTSKVLPIVTAQFSIKVTK >gi|308151777|gb|GL476245.1| GENE 51 66082 - 67086 1447 334 aa, chain + ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 334 6 340 340 443 67.0 1e-124 MNTILTGDRPTGKLHLGHYVGSLKKRVEMQADPTNQLFVMIADLQALTDNAKNPEKVSAN VLEVALDYLAVGLDPTKTTIFIQSQIPQLAELTMYYLNLVTTSRVRRNPTVKAEIEQKKF GEGVPTGFFIYPVSQAADITAFQANLVPVGEDQKPMLEQAQEIVHSFNQTYGEVLVRPEA VLPPKGMGRLPGIDGNGKMSKSLGNGIYLSDPAEVVQKKVMSMYTDPNHIRIEDPGQVEG NMVFTYLDVFGKEKEYIEELKEHYRHGGLGDVKIKRYLIDVLEEELAPIRRRREELAKNP EAIMEMLHKGSLAAEKVAAQTLTEVKKAMGIQYF >gi|308151777|gb|GL476245.1| GENE 52 67140 - 68873 207 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 338 563 2 230 245 84 28 2e-15 MIKPEHPIFYGLMICSLIGNLLIVAMTYIMAIGIDNLLEAIKRVGLKGMTLPLVEEALLG PVLLLILFSIISSITSFIQERAMASLSERVTLRIRKEVTKKFKTLPMAFFDNHQVGDIIS RSTTGLNQLSQVLLTGINQFFTSVVTILFAGIMLFYIDAKLTILVLLLIGGSTFMTTKIA NKNKVFADQSQAELGQLNNKMEEYLAGNLVTKTFNQQQNAEKTIAAVNQQHYRAFKKAQF LNFAIYPAIRFINQLAFIISAILGAMLVLSGGITIGFLQAYLQYINQISEPISTASYVIN SIQAAMASIDRIFVILDEADEQPEATHLETISSPKGAIEFKNVQFGYTPEKILMKNVDFS VQPKKTVAIVGPTGAGKTTLVNLLMRFYEINQGAITFDGIDITKLSRQNLRNLFGMVLQN TWLFEGTVADNIAYGKKDASREEIIEAAKIAQCDHFIRTLPQGYDTIISSENGALSQGQQ QLLTIARIILANPPVVILDEATSSVDTRTEAHIQKAMETVTENRTSFVIAHRLSTIENAD LILVMKNGDIIEKGTHQELLQAPTLYASLYNSQFQTT >gi|308151777|gb|GL476245.1| GENE 53 68971 - 70698 191 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 333 558 278 509 563 78 26 1e-13 MKLMKEFIKENKWIVLATTLTICLQIAGTLGVPKLVGKLIDVGIVSGDQQVIKTIGIQMF LVAFIGTIAAIISSYLSALVAAKFGFQVRGLFFKKFQQFSMKNVDKFGSNSLLTRMTNDV DNVQTMIVLFCQLIFPAPIISLFALVMTFSYSVSLAWVTLASIVFYLVVVYFLMKKGTPL SLKIQPKMDRITTTLREFFTGINMIRAFNNQDFEEQRTNQTFKNYAERMSKVNRIFAWIT PVAFLLMGVVYASILWFGGNLVAVGTLQIGTVTAVIEYTLLTLAYLMIAAMVLVVIPRSV ASLNRLQEVLSEEIEISDPHTEATIAYHPEKALICFDHVTFQYTETADPVLENVSFFIPK GKTTAIVGATGAGKSTLVKLLLRINEVTAGTISYSGTDIRSLSQQTIRKVISYVPQKAFL FSGTILSNLLMGNAKATTEEIRTALEISQSSEFIDSLPQGIESFVAQGGSNYSGGQKQRM CIARALIKPADVYIFDDSFSALDYKTDAALRAALHAQMSDKTLLIVAQRLSTIMNADNII VLDEGRIVGQGTHADLLTTNSYYQDFAKSQGILPK >gi|308151777|gb|GL476245.1| GENE 54 70813 - 71580 871 255 aa, chain + ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 464 100.0 1e-129 MEKNYTIKDVSELLNIPKSTIRYWDEQGLISTTRNEENGYRTFDLEDLFKIYDIDFYRKM GIPIKDMLNLYKKTPTDLYATMEATEEQLGQEIKRLQHKYKEIKKRKLHLHALIDLETLV FSDEPIPFDKIVVVDIEDPEEMKVYMEHISTLGIYGDLSESNELTYGICLANHVNKKSLD KVIWLKESSSQYKGFILKVNTQDTRLNNIEEVKKRLAKQGFETGIVVGEHILTQLEEENQ YIEYYYGWIEILGEK >gi|308151777|gb|GL476245.1| GENE 55 72054 - 75018 3053 988 aa, chain + ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 988 1 982 1499 1628 97.0 0 MNKAVKNFVSYLMITMLFILNLLPMMNAFAQEVTSDAEKTVEKDGLKVIGKIEDTSSQED IKTVTYEVTNTRDVPIKDLILKQKNTNDSPIKFVLDTLSEERGPTSLEEQAKVETNEKDQ TTDIKLLNLQPNSTRKITINGQITTKASSKLLVSVLIEDNEKGTLVIDLPNKYMLADKES VSKEKQETSETKVENQANETASSTNEMTATTSNETKPEAGKATESIQETALTQATESPEQ PPLKAQPTGPLVPPTPGRGFNTPIYQSVHKGELFSTGNTNLKIANENTAAAQTFLNTRGA SSGYAINNFPLEFADVDNDPNTYNSSRAYIDLNGAKEIAWAGLFWSASRYKGPAYGTNLS DEEISAPVQFTTPNGTVQRVSPQRYHRIDQDATNPGQRFGYNNTGFSNYADVTSILQGDK SATGSYTLADIPMTSSLNGQYQYYNFSGWSLFVVTKDQASKSRAFSIYYGARGNAAGTNN EFTMSNFLTAKQGNLDPIVTWFTVQGDKYWTGDNAQIKNSAGTWVNISNTLNPVNNAMNA TVTDNDEHMVDKYPGKFAPDHPNFLDIDIDRMAIPEGVLNAGQNQINFRTTSSGDDYSTN AIGFAVNAETPEFEIKKEIVEPKETYKVGETITYRVSLKNTKADSEAINSVSKDALDGRL NYLPGSLKIISGPNSGEKTDASGDDQAEYDETNKQIIVRVGNGATATQGGSYKADTAETI YEFKARINERAKANELVPNSAAVEAVDILTSAKVNETSNIVEAKIADEQVTGKLTATKTV NNSKPKLGEAIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSVGDEPKPTSLKE TNGTITAEYPSITDTKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPPEEPEVPITPEE PITPRVKEGKLTATKTVNNAKPKLGEEIEYTISFRNTIENGVLNKVVITDQLLKGLTYVK DSLTSVGDEPKPISLKEINGTITAEYPS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:34:28 2011 Seq name: gi|308151776|gb|GL476246.1| Enterococcus faecalis TX4000 genomic scaffold Scfld5, whole genome shotgun sequence Length of sequence - 64578 bp Number of predicted genes - 71, with homology - 66 Number of transcription units - 32, operones - 20 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 204 - 263 7.0 1 1 Tu 1 . + CDS 447 - 905 544 ## COG2707 Predicted membrane protein + Term 910 - 951 5.2 - Term 898 - 939 5.2 2 2 Op 1 . - CDS 944 - 1285 464 ## EF1247 hypothetical protein - Term 1305 - 1348 1.4 3 2 Op 2 . - CDS 1359 - 1622 477 ## EF1248 hypothetical protein - Prom 1672 - 1731 3.0 - Term 1719 - 1759 1.1 4 3 Tu 1 . - CDS 1778 - 3490 1772 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 3519 - 3578 8.0 + Prom 3611 - 3670 5.3 5 4 Op 1 . + CDS 3710 - 4369 646 ## EF1250 hypothetical protein 6 4 Op 2 . + CDS 4433 - 4540 176 ## + Term 4569 - 4604 2.7 + Prom 5307 - 5366 4.3 7 5 Op 1 9/0.000 + CDS 5409 - 6398 1289 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 8 5 Op 2 13/0.000 + CDS 6423 - 7310 1115 ## COG4120 ABC-type uncharacterized transport system, permease component 9 5 Op 3 . + CDS 7307 - 8074 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 8080 - 8112 2.5 - Term 8068 - 8100 2.5 10 6 Op 1 12/0.000 - CDS 8106 - 8567 483 ## COG3610 Uncharacterized conserved protein 11 6 Op 2 . - CDS 8579 - 9355 733 ## COG2966 Uncharacterized conserved protein + Prom 9328 - 9387 10.9 12 7 Tu 1 . + CDS 9587 - 9793 252 ## EF1258 hypothetical protein - Term 9753 - 9803 6.2 13 8 Tu 1 . - CDS 9811 - 10590 1014 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 10747 - 10806 7.1 + Prom 10709 - 10768 6.1 14 9 Op 1 40/0.000 + CDS 10805 - 11524 843 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 15 9 Op 2 . + CDS 11524 - 12993 1435 ## COG0642 Signal transduction histidine kinase + Term 12995 - 13043 10.2 - Term 12983 - 13030 11.6 16 10 Op 1 . - CDS 13032 - 13583 663 ## EF1262 hypothetical protein 17 10 Op 2 . - CDS 13598 - 14299 388 ## EF1263 hypothetical protein - Prom 14331 - 14390 5.4 - Term 14352 - 14399 10.7 18 11 Tu 1 . - CDS 14405 - 16513 2105 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 16582 - 16641 7.2 + Prom 16546 - 16605 6.7 19 12 Tu 1 . + CDS 16771 - 17943 1237 ## COG1092 Predicted SAM-dependent methyltransferases + Term 17954 - 18014 19.1 - Term 17950 - 17991 5.1 20 13 Tu 1 . - CDS 18010 - 18927 1018 ## COG1039 Ribonuclease HIII - Prom 19123 - 19182 3.5 21 14 Tu 1 . + CDS 19152 - 21566 2129 ## COG0474 Cation transport ATPase + Term 21567 - 21625 14.9 + Prom 21569 - 21628 8.0 22 15 Tu 1 . + CDS 21708 - 23594 1612 ## COG4932 Predicted outer membrane protein + Term 23630 - 23662 -0.2 + Prom 23635 - 23694 4.8 23 16 Op 1 32/0.000 + CDS 23800 - 24273 642 ## COG0779 Uncharacterized protein conserved in bacteria + Prom 24288 - 24347 2.3 24 16 Op 2 22/0.000 + CDS 24417 - 25616 787 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 25 16 Op 3 8/0.000 + CDS 25637 - 25936 536 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 26 16 Op 4 10/0.000 + CDS 25926 - 26231 495 ## PROTEIN SUPPORTED gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein 27 16 Op 5 32/0.000 + CDS 26244 - 28640 2936 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 28 16 Op 6 . + CDS 28665 - 29015 640 ## COG0858 Ribosome-binding factor A + Term 29017 - 29076 15.0 29 17 Tu 1 . + CDS 29098 - 29328 89 ## gi|307291257|ref|ZP_07571141.1| hypothetical protein HMPREF9509_01563 + Term 29349 - 29397 13.0 30 18 Op 1 . - CDS 29388 - 29861 534 ## EF1276 hypothetical protein 31 18 Op 2 . - CDS 29908 - 30390 585 ## COG1396 Predicted transcriptional regulators - Prom 30611 - 30670 11.6 + Prom 30371 - 30430 6.3 32 19 Op 1 . + CDS 30608 - 30742 179 ## 33 19 Op 2 . + CDS 30773 - 31543 787 ## EF1279 DNA replication protein, putative 34 19 Op 3 . + CDS 31562 - 32404 799 ## COG1484 DNA replication protein 35 19 Op 4 . + CDS 32407 - 32499 210 ## 36 19 Op 5 . + CDS 32492 - 32863 337 ## EF1282 hypothetical protein 37 19 Op 6 . + CDS 32883 - 33290 589 ## EF1283 RinA family transcriptional regulator + Prom 33447 - 33506 4.5 38 20 Op 1 . + CDS 33536 - 33928 404 ## EF1284 structural protein, putative 39 20 Op 2 . + CDS 33941 - 34453 1019 ## EF1285 major tail protein 40 20 Op 3 . + CDS 34487 - 34846 490 ## EF1286 hypothetical protein + Term 34854 - 34894 7.5 41 21 Op 1 . + CDS 34939 - 35232 352 ## EF1287 hypothetical protein 42 21 Op 2 . + CDS 35222 - 38155 3655 ## COG5412 Phage-related protein 43 21 Op 3 . + CDS 38157 - 39083 1222 ## EF1289 tail protein, putative 44 21 Op 4 . + CDS 39096 - 40553 1204 ## EF1290 structural protein, putative 45 21 Op 5 . + CDS 40586 - 42355 1604 ## EF1291 hypothetical protein 46 21 Op 6 . + CDS 42379 - 42774 466 ## COG4824 Phage-related holin (Lysis protein) + Term 42859 - 42909 15.3 + Prom 42830 - 42889 2.8 47 22 Tu 1 . + CDS 42920 - 44017 1389 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 44023 - 44069 11.1 + Prom 44082 - 44141 4.9 48 23 Op 1 12/0.000 + CDS 44171 - 45091 1080 ## COG0130 Pseudouridine synthase 49 23 Op 2 . + CDS 45117 - 46067 611 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 50 23 Op 3 . + CDS 46067 - 46663 594 ## COG3153 Predicted acetyltransferase + Term 46674 - 46726 17.2 + Prom 46716 - 46775 5.8 51 24 Op 1 3/0.000 + CDS 46813 - 47136 324 ## COG1695 Predicted transcriptional regulators 52 24 Op 2 . + CDS 47140 - 47481 468 ## COG4817 Uncharacterized protein conserved in bacteria 53 24 Op 3 . + CDS 47507 - 47767 274 ## EF1299 hypothetical protein + Term 47778 - 47838 0.7 + Prom 47841 - 47900 7.0 54 25 Op 1 2/0.000 + CDS 47926 - 49101 1074 ## COG0772 Bacterial cell division membrane protein 55 25 Op 2 . + CDS 49067 - 50215 956 ## COG0772 Bacterial cell division membrane protein + Term 50225 - 50289 11.8 - Term 50213 - 50276 13.3 56 26 Op 1 9/0.000 - CDS 50277 - 51164 865 ## COG0583 Transcriptional regulator 57 26 Op 2 . - CDS 51188 - 52063 865 ## COG0583 Transcriptional regulator - Prom 52088 - 52147 6.3 + Prom 52438 - 52497 2.8 58 27 Op 1 . + CDS 52542 - 52631 67 ## 59 27 Op 2 . + CDS 52600 - 55260 2572 ## COG0474 Cation transport ATPase + Term 55313 - 55356 3.3 + Prom 55354 - 55413 5.3 60 28 Op 1 5/0.000 + CDS 55468 - 56652 1209 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 56666 - 56708 5.0 + Prom 56769 - 56828 7.8 61 28 Op 2 21/0.000 + CDS 56878 - 57921 1198 ## COG1420 Transcriptional regulator of heat shock gene 62 28 Op 3 29/0.000 + CDS 57976 - 58515 858 ## COG0576 Molecular chaperone GrpE (heat shock protein) 63 28 Op 4 . + CDS 58575 - 60404 2592 ## COG0443 Molecular chaperone + Term 60424 - 60475 7.4 + Prom 60440 - 60499 2.5 64 29 Op 1 . + CDS 60519 - 60641 118 ## EF1309 hypothetical protein 65 29 Op 2 . + CDS 60696 - 61865 1567 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 61875 - 61923 13.1 + Prom 61891 - 61950 7.7 66 30 Op 1 . + CDS 61970 - 62647 440 ## COG1396 Predicted transcriptional regulators 67 30 Op 2 . + CDS 62710 - 62871 150 ## gi|315169992|gb|EFU14009.1| conserved hypothetical protein + Prom 62961 - 63020 8.7 68 31 Op 1 . + CDS 63041 - 63184 172 ## + Term 63193 - 63232 -0.4 69 31 Op 2 . + CDS 63247 - 63777 387 ## COG0466 ATP-dependent Lon protease, bacterial type 70 31 Op 3 . + CDS 63761 - 64276 206 ## gi|307291297|ref|ZP_07571181.1| hypothetical protein HMPREF9509_01603 + Prom 64291 - 64350 5.4 71 32 Tu 1 . + CDS 64403 - 64573 133 ## gi|307291299|ref|ZP_07571183.1| phage putative tail component protein Predicted protein(s) >gi|308151776|gb|GL476246.1| GENE 1 447 - 905 544 152 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 142 4 144 153 114 56.0 1e-25 MESWLFLLLIALIAFVAKNQSLLIASVVVLALKALPNSAKIMSWLSDKGINLGVTIISIT ILVPIATGQIGLKDLIQSFKTPMGWLGIFCGILVAVLSSKGVGLINQSPEITVALVFGTI LGVVFLKGIAAGPIIASGMMYVIITTFQAFQH >gi|308151776|gb|GL476246.1| GENE 2 944 - 1285 464 113 aa, chain - ## HITS:1 COG:no KEGG:EF1247 NR:ns ## KEGG: EF1247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 221 100.0 6e-57 MSLTISEEVKQRLAPFLTETNTFLLVANDGSNPYSSAEGCCMIGDRFIIVPVDQAEAPYT ETIANDSFHVYTSTYDQMFLTGHLQLVIHPNAGTITLKNESGILDSNVDIYQH >gi|308151776|gb|GL476246.1| GENE 3 1359 - 1622 477 87 aa, chain - ## HITS:1 COG:no KEGG:EF1248 NR:ns ## KEGG: EF1248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 111 100.0 1e-23 MVFLHIIFGMFAFIGALGLGVAFRDSFTELSTPKKAAIILSYVGAIGSTVLGFTSATKNP FVLAATVVLVVAFSIALFKKSSKETSK >gi|308151776|gb|GL476246.1| GENE 4 1778 - 3490 1772 570 aa, chain - ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 565 1 551 551 508 50.0 1e-143 MSFDGVFTHSMVHELTETLVSGRISKIHQPYENEVVLVIRAKGKNHKLLLSAHPSYARIQ LSTITYSNPETPPNFVMMLRKFLDGAILETIQQIENDRVIHFTFSKRDELGDLQNIVLIV ELMGRHSTIVLVNQSSGKILDAIKHIGMSQNSYRSLLPGATYIEPPKPMGLNPLTASKEE VFALLSTAPELNGRYLQQHFQGLGKDTADELSARLLAQPNEKMAIWTEFWSSVTEAVVPT LTVTEKKEYFTPIPYQSLVGEQTTYPTLSELLDAFYSGKAEKDRVKQQGGELIRKIENEL KRNQKKLKKLQQTLADTENAENYRRDGELLTTFMAQVPKGATEVELPNYYEENAPLRISL SPALSPNQNAQKYFQKYQKLKNAVRVVKTQIQQTQQEISYLESVVAQLEIATPMDIEVIR EELIEQGYLKRKKNKKQKQPKKSQPDLFYATDSTPILVGKNNLQNDQLTLRTAKKTDYWL HAKDIPGSHVIIRDAHPSEETLTEAALLAAYFSKYRLSSQVPVDYVQVKHVHKPNGAKPG YVIYENQRTLYVTPTEESIKKIQQNKASAS >gi|308151776|gb|GL476246.1| GENE 5 3710 - 4369 646 219 aa, chain + ## HITS:1 COG:no KEGG:EF1250 NR:ns ## KEGG: EF1250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 5 223 223 320 99.0 2e-86 MEELKEALYELRQRKLLMITAIVALVLIIGSIIFIPTMQKNIRAAQVESLVAGPIKSEKV SVLDYKTADKKIQETGAMSVMFAKPSGKQYDQMVKLFNSDKMNEFHRSLYIYPLIYNAGK AQEQYNVSGDEITLIFFENGKEKTRTVVEKSMDLKTQLIPELNRLPMAGVLKDQQKAAQE AEKEAAKTAETQTTTSTTGVAQSTETTIESTDTVPETGE >gi|308151776|gb|GL476246.1| GENE 6 4433 - 4540 176 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALVISMTILVSLWLIQSQKQAVKVPVKIERNRNN >gi|308151776|gb|GL476246.1| GENE 7 5409 - 6398 1289 329 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 11 339 344 296 52.0 4e-80 MKNKRLTVVVSLLAIYLIGAFFVNQKETNSKKETVTVGVLQFVSHPALDEIYKGVEEGLK ENGYDKGKNLEIIFQNGQADQSKLAIMSQQLVQKKADVLIGIATPAAQALANTTQEIPII LGAITDPVSAGLVKDNQKPGGNITGVSDQSPLSAQMDLLKELIPAAKKIGILYASSEENS RYQVAEAQKAAEAKGLTVKTYAVPSSNEIAQTVQVMTKETDVIYIPTDNTIANAMQTVVG EANRTKTPIIPSVDTMVEQGGLATVGINQHALGVQAGKMAAEVLSGKSQPATTPIYTFNT GDTIINEKQAQKLGITIPAELAKKSKLIN >gi|308151776|gb|GL476246.1| GENE 8 6423 - 7310 1115 295 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 283 1 280 288 294 62.0 1e-79 MIVSAIGQGMLWALLGLGIFMTYRILNFPDMTTEGSFPLGGAVCVTAITTGVSPFVATLL GVGAGMLAGLVTGLLFTKGKIPIILAGILVMSGLNSVILFVMKSPNKSLLNQPKIQDVFQ KMALPDYYDTIFLGISVLAVVMILLLFFFNTSLGQAYIATGDNEEMARSIGIQTDRMKIL GLVLSNGLIGLSGALIAQNDGYADVSKGTGVIVIGLASLIIGEVLFGELTFGERLMAIVV GSIIYQLLILLVIKLGFDTTYLKIFSAVILAICLMIPQLKKALRLHGFSDKGETK >gi|308151776|gb|GL476246.1| GENE 9 7307 - 8074 209 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 238 38 248 329 85 29 9e-16 MKPVVELKNATKIIDNGMNEKKVILDHVNLAIYPGDFITVLGGNGAGKSTLFNSLAGTLT LTEGQFLIEGVNRTNLSEVKRAKSLARVFQDPKMGTAPRMTVAENLLLAMKRGQKRPLTL RKINEQRALFTKICQEVGNGLENHLDTPTGNLSGGQRQALSLLMATITKPELLLLDEHTA ALDPKTSKQLMHLTEQRIEEGNLTCLMITHRMEDALRYGNRLIVLQKGKIVQDLNAAEKA QLTLQDLLLFFEEVE >gi|308151776|gb|GL476246.1| GENE 10 8106 - 8567 483 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 142 7 145 152 121 45.0 4e-28 MELIFHLLFSFLATVTFGIITNIPRKALVACGITGMTGWMIYYVLTQTFDASQTFANFLG TVGLGIASIFFSRYKKMPMIIFYIPSLVPLVPGGPAYQAVRSILLGNIDDGLQLILKVVF TAAAIAAGFMVTSLLERIVKRFFPKRLFRLVKK >gi|308151776|gb|GL476246.1| GENE 11 8579 - 9355 733 258 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 258 2 250 250 234 48.0 1e-61 MKGAIPLVNSEKRKQLIIDTCILAGKIMLESGSEVYRTEDTITRIATNAGEPESVCYTTA TGIFVGFRSSNYTQLENIPQRSINLEKVSLVNQLSREFAQKEITLPELYQRLTLLETDTP TFSISLRLLAAGIVSCTLMYIFGGTWQDFIATFFVGVIGYASYLFTQKLFQVPYLDSFAA AFVIGLLAYLAVHFHLAVNIDNIIIGAVMPLVPGVAITNSFRDILAGHLISGTARGTEAI FIAGSVGLGIALIFKLFM >gi|308151776|gb|GL476246.1| GENE 12 9587 - 9793 252 68 aa, chain + ## HITS:1 COG:no KEGG:EF1258 NR:ns ## KEGG: EF1258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 111 100.0 8e-24 MDNQWLLYGISSVVLIILIRRTILSGNIVLSCLLGAILLIQVVGVALCAQQKKKNEHTKE LPSSKVHQ >gi|308151776|gb|GL476246.1| GENE 13 9811 - 10590 1014 259 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 259 2 256 256 239 46.0 3e-63 MDKMKAITFFDLDGTLLDGKSQITPKITAAVAALKDNQILPLIATGRTLCEIQPIMKASG IDSAIVMNGQFIHYEGKTIYSDEFTTEECVSLHEHVKQRGHELAFYNERRIFCTGHTGTV KQAYDYIHSAVPEIDPTGYENDAVNMMLVLSQHGDDDEYYYERFPELTFYRNGPFSIDIV RKGVSKGSGVKNLFNTLGLNGIPTYAFGDGINDLALFEACDYGIAMGNAREELKEKATFI STKNTENGIVNGLKKFDLL >gi|308151776|gb|GL476246.1| GENE 14 10805 - 11524 843 239 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 235 1 226 227 266 60.0 2e-71 MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNLPSMD GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKVGPQVIQTVWGVGYKFDDSGVA >gi|308151776|gb|GL476246.1| GENE 15 11524 - 12993 1435 489 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 482 4 467 473 325 40.0 2e-88 MKYLYQQLLAFIGVIALIILIVGTSFTQLTKRTMQENNYEQLYGYAESALETRDFFINVA GVSDRDVLSYSFQLTERVLQKQDVQFVFINKDREVQYPPVDSTKKLDFSLIDKNWDQIMK GNRVYATENIDIYGARNISSYVMLPVYASNQSSDKKVIIGSLVITQPAKNVDRSVQSVTQ NLIKGFIFSGVIALLLSYLFATFQVKRINRMRKATKEITSGNFDIQLPVHDKDEFDDLAE DFNKMAASLKESQEEINRQEERRRQFMADASHEMRTPLTTINGLLEGLQYNAIPENQKEN AIKLMQNETARLIRLVNENLDYEKIRTNQIQIVVKKFNGTEALENIVTQLTAKAEAAGNQ LYLDTTEPIDVYADYDRFVQVVVNIVQNAIQFTENGEIHIALEKGYLETIVRISDTGIGM TEEQILNIWDRYYKVDPSRKNTKYGESGLGLPIVQQLVRLHKGKINVESELGKGTTFIIS FPDVEITEN >gi|308151776|gb|GL476246.1| GENE 16 13032 - 13583 663 183 aa, chain - ## HITS:1 COG:no KEGG:EF1262 NR:ns ## KEGG: EF1262 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 183 308 99.0 7e-83 MNVTPSFKKTTEKKSSFDALALREVYGIIYSAPEQELALADFFQTNQLTITRLSSSETFL PYLPLEENLFIASTIKERDRKVVLAEAFQVFQLEPALLGRSFTSFTTFEKIKMRIIQLLL SKTSTLVIDDIFSSLTIGQRQEILPQLKIAVQKRNKRLLFLTKDPQIIDSPYVHPLSLHA LLN >gi|308151776|gb|GL476246.1| GENE 17 13598 - 14299 388 233 aa, chain - ## HITS:1 COG:no KEGG:EF1263 NR:ns ## KEGG: EF1263 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 364 100.0 1e-99 MRSVRYATASSFYHKKITLITALFFFLFSFLLTGLFNLIDFEKEFLRTMPDFVDIEKQTS YHYQLIQYYWHLYLGSVIFFGVTFLLLMYVTLRIKKEEIHTWYHMHFSNMYVTKQLLLEL CLPALLGIFSFLLFTLMFQETYNTVLWAARDAILQWSHLETPAFLAKSTDQDVTITNIQH LGIQTIQAFSFDFKSMQSLYTIRNCFVNCLILLGIPLVCGTPFTLIYLRTHKK >gi|308151776|gb|GL476246.1| GENE 18 14405 - 16513 2105 702 aa, chain - ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 694 18 712 736 735 55.0 0 MKKLFKTNILNTRLGLFSLIAILLWLKNLFAYAVDFHLRLENINEYFILLINPIATTVFL LAIALYVRRKKASYITMMIIYFLMSLLLFSNVVYYREFTDFITVNTMLGAGKVASGLGES ALRLFRPYDVIYFLDFIIIGVLLLTKKIKTDARPVRARVAVSVTLLSVVFFLFNLFMAET ERPQLLGRQFSRDYIVKFLGLNAFTVYDGITTYQTNQVRAEASANDMKQVEDYVKQQYAA PDDSKFGIAKGKNVIYIHLESFQQFLVNYKLKDENGVEHEVTPFINSLYNSKSTFSFDNF FHQVGQGKTSDAETLLENSLFGLDQGSLFTQVGGKNTFEAAPDILKQTQGYTSAAFHGNA GNFWNRNETYKRLGYDYFFDASYYDVNSDNSFQYGLHDKPFFNQSVQYLEHLQQPFYSKF IAVSNHYPYSQFTNDEAGFPIAKTSDETINGYFATANYLDKAVEEFFNYLKSSGLYENSV IVLYGDHYGVSNSRNQNLAELVGKTKADWNDFDNANMQRVPYMIHVPGQENGGVNHTYGG QVDALPTLLHLLGVDTKNYIQLGQDLFSKQHNQIVAFRNGNVVTPKYTILGSSIYDTKTG TLITEPTEEVKKEVADLKAKATKQLETSDQITNGDLLRFYTNSGLKPVNPEDYDYKNQLQ QLEAIEKEKGEKSTSVYSKNNNKSTVDEYHTDSYQGYQKTGK >gi|308151776|gb|GL476246.1| GENE 19 16771 - 17943 1237 390 aa, chain + ## HITS:1 COG:L52686 KEGG:ns NR:ns ## COG: L52686 COG1092 # Protein_GI_number: 15672238 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferases # Organism: Lactococcus lactis # 2 390 3 389 389 440 59.0 1e-123 MKLQVTKKAEHKFKKGYPLIQKEDLQQVPAPLPTDWLTLIDSKGQRLAEGYLGEQNKGIG WLLSWHGPINQSFFQQLFEISREKRTPFEKDSLTTAYRLFNGEGDGIGGVIIDRYADYAV FSWYNETLYQKKAELLTAFRTVYPDIIGAYEKIRFSTKDLPESQFLYGEQAPEPLLVTEN GVQFATYLNEGLMTGIFLDQKEVRGRLVDGFAVGKTVLNMFSYTGAFSVAAAMGGAVATT SVDLAKRSLPKTTEQFEVNHLNLAPQKIIVMDVFDYFKYASRKGLSYDMIILDPPSFARN KKKVFSVAKNYGELVKDSIDILTDKGTLIASTNAANLSLAKYQKMVITALQEKNVRYKIT DTYQLPADFQVNPNFPEGNYLKVLFIEIEK >gi|308151776|gb|GL476246.1| GENE 20 18010 - 18927 1018 305 aa, chain - ## HITS:1 COG:lin1191 KEGG:ns NR:ns ## COG: lin1191 COG1039 # Protein_GI_number: 16800260 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Listeria innocua # 4 304 3 305 308 253 47.0 2e-67 MAQNHVIKVSKKTLAEMTTVYQPNRLNKTVPYTVFVAKVGTTTITAYQSGKVMFQGPQAE KEAARWEGTSTTPKKKVSPQTTTLPADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMI SKLKALGVRDSKELTDPQIIQLSHVIKELIPYKLLIVEPKKYNKIQPNYNAVHMKVALHN QAIYLLLQELAPTKPEGILIDQFTPENNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAA SIISRAAFLEELDKESAELGFSVPSGAGSKSDQVAARILKKGGLDLLANYAKLHFANTQK AQKLL >gi|308151776|gb|GL476246.1| GENE 21 19152 - 21566 2129 804 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 28 794 4 772 775 718 50.0 0 MRRKKEMQENEPIAVTANAERYYPEDKQGLTAAQVEERQRKGLVNAAVDTEFITTKQIVI NNVFTYFNLIFVVLGVLLMLVQSYKNMTFLPVVIINTVIGIYQEIKSKKVLDSLNILNAT KVTVVRDGQEQEISPDELVLDDVVLFKSGEQISGDAIVLSGEVRVNESLLTGESDEITKV ADSQLLSGSFIVSGSCYARIDKIGAEAYVHQLTLEAKSIKKGEQSEMVGSINRLVKWVGI IIIPIGCVLFFQSYFINHQGLHDSIVSMEAALIGMIPEGLYLLTTVALAASTMRLAKRGV LLHNMKSIESLARVDVLCVDKTGTITENTMEVQELVPVVSIENDGTDLTNVEKLIGDFCR TMSADNDTMKAMKEFFVTNNQREAVSYTSFSSVEKFSSVTFPEATYILGAPEMILRDNYE MYQSEVEHYTSQGYRLLVFGKYLGEFQETLAAEVQPLGYILLWNPIRKEAKATFEYFAEQ NVAIKVISGDNPLTVSNVAQAAGIIGAENYVDARTLTTMEAQTEALEKYTVFGRVTPEQK KQFVLLLKKLDHTVAMTGDGVNDILAMKEADCSIAMASGNQATAQASQVVLLDSDFSTMP EVVFEGRQVVNNIERSSSLFLVKNIFSLLMSVFAMIFAVTYPLQPTQVTLISLFTIGIPS TFLALEPNHRRIEGKFLFNVLSKAIPGGLTDMLVVGALLICGDILALQKTDISTTATLLL VSVGFMVLYKISSPMNRYRKRVMIGCLIGMVITSISMKNLFSLTSVSPTALLLLAILFFA ADSTFQHLSTISEKVQLWFYKKRH >gi|308151776|gb|GL476246.1| GENE 22 21708 - 23594 1612 628 aa, chain + ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 58 603 43 562 586 128 27.0 4e-29 MKKRSFVYWGMFFILLSTLITPFLKLETGYAQTEPTSTSETNQISATPNVVPRKQVGNIV TAIQLTDKEGNPLGTINQYTDIYLRIEFNLPDNTVNSGDTSVITLPEELRLEKNMTFNVV DDTGAVVAIAQTDVANKTVTLTYTDYVENHANISGSLYFTSLIDFENVENESKIPIYVTV EGEKIFAGDLDYQGEGDDVNEKFSKYSWFIEDDPTEIYNVLRINPTGQTYTDLEVEDVLK TASLSYMKDTMKIERGQWTLDGNAIWQFTPEEDITGQLAVQYGPDDRNFSVHFGNIGTNE YRITYKTKIDHLPEKGETFTNYAKLTENQTVVEEVEVSRVSQTGGGEANGEQYVVEIHKE DEAGQRLAGAEFKLIRNSTNQTVAKITTDQNGTAIVKGLLKDNYTLEETKAPTGYQLSQN KISITPEDFGKNLVALKTVVNHKISYQPVAASFLAGKVLLGKPLKDAEFQFELLDEKGTV LETVSNDTLGKIQFSPLTFETPGNYQYTIREVNTRQAGVSYDTHNLQVQVTVEALLGNLV ATTQYDGGQVFTNHYTPEKPIESTTPPMSGTTDTTTNSTTETTSITIEKQAIRNKELPKT GETKENAFLFLGSLLLIQGLFIYFKTKK >gi|308151776|gb|GL476246.1| GENE 23 23800 - 24273 642 157 aa, chain + ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 172 57.0 2e-43 MSSAVETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKEGGIDIEECAFVSEKLS EKLDAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTL VHLDSEQLTLSVKIKTRVKEMTFERKNIAKARLAIQF >gi|308151776|gb|GL476246.1| GENE 24 24417 - 25616 787 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 372 9 372 537 307 44 8e-83 MSKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYA VKEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVRE AERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKV YVSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRST DPNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPE NSKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVA EEMDEAIIHSDMTADDYENLAAEEAVVEAEITEELPEQE >gi|308151776|gb|GL476246.1| GENE 25 25637 - 25936 536 99 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 96 53.0 1e-20 MKKRKIPMRKSVVSGEMKPKKELVRITRSKEGEVALDPTGKLPGRGAYVDLDPAEVQKAW DKKILDRVLETKLSDEFYQELLDYVTHQKARKELFGDGK >gi|308151776|gb|GL476246.1| GENE 26 25926 - 26231 495 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein [Enterococcus faecalis V583] # 1 101 1 101 101 195 100 6e-49 MENKTKILNLLGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDASENTRKKIKDKSSYY NVPVSELFSQFELSQAIGRPRMVIGVTDAGFATKIKELLKG >gi|308151776|gb|GL476246.1| GENE 27 26244 - 28640 2936 798 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 798 1 781 782 842 59.0 0 MGKKRIYELAKEMNKASKDVVDKAHQLGMDVKNHMGAISSEQETKLRQAFGGGSTVNTQS KATNNQKQQTTQNKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNRHGQSNTQN RSNQTNTNNQNRNTQNNNGSTTNQNRTNQNNNGGNNQNRGGQNRNNNFGGGQNRNNRNNF NNQNRNRFNKKGKKGKHQQESAKPAVPARKFRELPDVLEYTEGMNVADIAKKIHREPAEI IKKLFMMGVMVNQNQALDKDTIELLAVDYGMEPQEKVQVDIADIDKFFEPEAVVEENLTT RPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQLDIDGKPITFLDTPGHA AFTSMRARGASITDITILVVAADDGVMPQTIEAINHAKAAKVPIIVAVNKIDKPGANPDH VKQELSEHELIPEEWGGDTIFVNISAKFNQNIDELLENILLIAEVEDLKADPTQKAIGTV IEARLDKGKGPVATLLVQQGTLHVGDPIVVGNTYGRVRVMTNDMGRRDKEAGPATPVEIT GLNDVPQAGDRFVVFEDEKTARQAGEERAKRALLEQRSASSRVTLDNLFESLKEGELKEV NIIVKADVQGSAEAVSASLQKIDVEGVRVKIVHAAVGAINESDVTLAAASNAIIIGFNVR PTPQAKQQAEQEEVDIRLHRIIYKALEEIETAMKGLLDPEFEEKITGQMTVRELYKVSKV GTIAGCYVTEGFIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKLGFECGAMIENFN DLRVDDAIEGFIMEEIKQ >gi|308151776|gb|GL476246.1| GENE 28 28665 - 29015 640 116 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 113 3 115 118 135 61.0 2e-32 MANYRDRRVGQEIMREVNDILNKRIRDPRVQGITITDVRVTGDLQQATIYYSLLSDLASE QQKAQQGLDKAKGLIRKELGQRLTLYKTPELIFERDESVQYGNHIDELIRKLNQGE >gi|308151776|gb|GL476246.1| GENE 29 29098 - 29328 89 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291257|ref|ZP_07571141.1| ## NR: gi|307291257|ref|ZP_07571141.1| hypothetical protein HMPREF9509_01563 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01563 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_00084 [Enterococcus faecalis TX4000] # 1 76 1 76 76 119 100.0 8e-26 MKRIVVFYKNGDRYLKEMGSGKSSLYFFLFLFVLHSMREHIIQFIGFWPSFIFVLILVPN LMLGVGHINHWYKNRS >gi|308151776|gb|GL476246.1| GENE 30 29388 - 29861 534 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 157 1 157 157 283 100.0 2e-75 MNDYEKLVSSIQKDVTVLEIDLYNQTGCYGLYRNGKIYIEKTLSTRQKKNILAEEYGHYQ TSVGTILNQNCTENRKQELKARNVALEQLVTLDDLIRCSEAGLSNHYSCAEFLEIDVETL KNVITYYRQKYGATYLYKGRIFEFRDYSVMVLNTGLT >gi|308151776|gb|GL476246.1| GENE 31 29908 - 30390 585 160 aa, chain - ## HITS:1 COG:FN2065 KEGG:ns NR:ns ## COG: FN2065 COG1396 # Protein_GI_number: 19705355 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 4 78 7 79 155 58 45.0 6e-09 MNIFTIRLKEALTAKNIKPSELAKKTGIGKSSISDWLAGRYEAKQDKVYRIADALDINEA WLMGQEVPMEKNASTIDRIYKKLEPQRQAIVYQFAEQQLHEQQTQAEILSFPRRDEMTLA AHAGDPEKIFSKEEIEKIHDYLDEIDAKYQQSISSDKKED >gi|308151776|gb|GL476246.1| GENE 32 30608 - 30742 179 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNYKKTLSDMLLLAIILLISSVSIKIGAIVIGMIGLMELLTE >gi|308151776|gb|GL476246.1| GENE 33 30773 - 31543 787 256 aa, chain + ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 256 498 99.0 1e-139 MAERRMFAKTIIDSDAFLDMPLSSQALYFHLAMRADDDGFINNPKKLQRMVGCGEDDLKL LMVKKFILVFESGVIVIKHWKIHNYIRSDRYKPTLYQEEKNQIVEKNSKAYTFKAESSVS GQPADYQRLPQESIVQSKLGQSQGSSSENDCLKTIYHFYEENGFGTLASKTSQDFKYWLQ DFIQKGASQEEACQLILHALGIAVDRNKRNYGYVNAILKSWEQQNYLSVHEVLVNDKKQV LEHAPQMTEEYQELGF >gi|308151776|gb|GL476246.1| GENE 34 31562 - 32404 799 280 aa, chain + ## HITS:1 COG:L0312 KEGG:ns NR:ns ## COG: L0312 COG1484 # Protein_GI_number: 15673401 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 275 62 291 294 102 29.0 6e-22 MHATDQTFQILLSQLLEKVEDRCPECGSEQYVWQQKNKDGTERCAPTCWSCGYKMLKKHE QEATQQRSQESFMARTQKFFHQGSLIADDALRQCRLTNYQTTELETRQAKERALAAVSAI VEGKPIHVIFSGKPGVGKSHLAISILVEVLERSAYQKYCLFVSYSELLEKLKMSMNESAK SQAKAQAYITRMKKADVLVLDDLGAELGIKNKVSTDFNNDILNRILEARQNKATIFTTNF SGKQLVEAYGTRIISRLMKHASGYVFQYKDTTDKRMRSVK >gi|308151776|gb|GL476246.1| GENE 35 32407 - 32499 210 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTIIIGFIFWTMTLMLGYLIGEREGRKHE >gi|308151776|gb|GL476246.1| GENE 36 32492 - 32863 337 123 aa, chain + ## HITS:1 COG:no KEGG:EF1282 NR:ns ## KEGG: EF1282 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 212 99.0 4e-54 MSNLTKCKKDLFEMKSVVFKDISKQQSEKAQKRKRLLQLMNQYPDWASQKNKLIMQEIQE LGQAIGNWSMDQSRPIQSIKAASFTKSEYLYLIWLGYSDEAIRHGLDMSKECYFIYRLTL LNE >gi|308151776|gb|GL476246.1| GENE 37 32883 - 33290 589 135 aa, chain + ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 247 97.0 9e-65 MRTSTFNYIKDILADFYKTDEYIRQREEELRHPYQEADLNAGIRGQGLHSAVTERMAFTI AMDRRLWNLERNRDIIKNCLAEADEQTRVIIEELYMKKRPSLTLIGLAQQLFISKSQAYK LRNHFFEAVADELGM >gi|308151776|gb|GL476246.1| GENE 38 33536 - 33928 404 130 aa, chain + ## HITS:1 COG:no KEGG:EF1284 NR:ns ## KEGG: EF1284 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 130 249 100.0 3e-65 MNEAEQELYEALVAICQTSGFLLLEELPTDLPDQPFVYLGDSKELPKPTKSAILGEIELI MHVYGALSERQQISTIKGTILRQATSNLKRTAHFNWGIKHQEVKAQMVKDTKQMKKTIWH AVLPLHMQFY >gi|308151776|gb|GL476246.1| GENE 39 33941 - 34453 1019 170 aa, chain + ## HITS:1 COG:no KEGG:EF1285 NR:ns ## KEGG: EF1285 # Name: not_defined # Def: major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 170 310 99.0 1e-83 MGEVMQGKDRILLVRRLDEAATKKAMKPLFQIEHEWEFSRESSGTQTKDGVANAVSGLEV TLSLSGLASRDDENLYMKDAVEDGILMEFWDVDLKGEKNAEGKYPAIYAQGYVNSWSLPA NVEELVEIETEASINGKPQDGFATVEADIIAEAQYAFQDTVPEKAPQPGA >gi|308151776|gb|GL476246.1| GENE 40 34487 - 34846 490 119 aa, chain + ## HITS:1 COG:no KEGG:EF1286 NR:ns ## KEGG: EF1286 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 207 100.0 9e-53 MNLEINGKTIEVKFTIGAIRELDKRYQIENGAAKFGMGISSAMIYLRQYNPVILVDIMEA LQSGQLKIGKSEIEAWLMTQDVKKLSDDLLKEMGKQPLTKPMIDQFSKEAKKAEAQATN >gi|308151776|gb|GL476246.1| GENE 41 34939 - 35232 352 97 aa, chain + ## HITS:1 COG:no KEGG:EF1287 NR:ns ## KEGG: EF1287 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 26 122 122 137 100.0 1e-31 MSEFELRMIAFNLAEVDEERKRHELAYLNVKAQATNKKGKPVFESFKSFYDYEKRVAEVL AANQPQRTKLNERKKTQLATVAERLRRYREGRRVDGE >gi|308151776|gb|GL476246.1| GENE 42 35222 - 38155 3655 977 aa, chain + ## HITS:1 COG:BH0012 KEGG:ns NR:ns ## COG: BH0012 COG5412 # Protein_GI_number: 15612575 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 610 976 137 509 509 125 28.0 4e-28 MENDKEKTPLSEAKKSLAGVQQALKSMSGEYALLSGYLGKISAGVNQSATVMNTFKTVMQ QSGETVKKTGDETAKAADQMNTALTDSAEQAGEAAKKAGKETSDGFTNAQNNMLSFGTAM TSAVSLPMLNVLKTAMGVGAGVSGEFQGMQGLIMASAGGISDSLQGELQGALTQMNQSFE AAAQVIQSVMAPGMEILVQVVITVVKGITALVNLFIKLPKPVQVFIVAIMGILAAIGPML IMVTMAQQKFQQFSAGLALVQGNIGKLGGGLSKLSANFSALGGGPLILIVAAVLAAVAAF IYFYKTNETFRNSINSLASAIQGAVSAAFGKLVGLLQQIQPAFQQVMAVFKQFFAVGLEK MATIFSTIGRVLAGVFASGLQLGSNLLGQFGGTFDKAGLAVGLLVKVLTKVALAALGISG PFGLIISLIVSFVTAWMKTGDLSAGGITQVFDNLGNTITSVTTMLAANLPKVIQLFTTVL TSILGKITEAIPSIVTALSSLITLIVGAIVANLPVLIEAATQIITTLIQGITTVLPMLIE VGLSLLMTLVNAIVTALPTITTAAINIITTLVTAFVTALPMLVTAGVSIITALVNAFVTM LPLILTAGLQILMALITGIMTILPQLIQSALTIILALVTALIGALPQIISAGVKLLMALI QGIISILPTLVAAAITLILTLINALIGALPQIISAGVKLLMALIQGIISILPQLVTAAIT LITALMGALINALPQLLSAGIQLIQALINGVLSLLGALLSAAGTLISQMITKIGSYFGQL LASGGQLVENIKNGVTNAADQVKNAIGSVIEGAWQAIQGWFSKFTDAGANIVGMIADGIT GAIGKAKEAIDGVVSKIRNFLPFSPAKEGPLSDLHKLNFGGTIATGIYAGETAVSRAMAS ILDLPLLNDFALDLTGRGNFTATIDHRLENDAYNRPLFVTVESTLDGKVVAATTAPYLAT ELQRQQVKQNNRLGRRG >gi|308151776|gb|GL476246.1| GENE 43 38157 - 39083 1222 308 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 616 99.0 1e-175 MYKFVDTNQATHSTPLPSEALNFNGQFLEKVIPGYQTLSVSGRELVPSEIESYQLGIRDG KRHVYARIPERELTVKYRLSAVNNEAFRDAFNHLNVALFTEKDVSIWFNDEPEMLWFGSK SSVSDVPEGVNQVTGTFTLLLSDPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVDF PILIEGGAYWGSTMITFQNRAYTMGDLGKEVRPIEIYTTVEGLKVKPTIILIGTGRGVWI KTRNDTINLGDFDRSEIIIDTENFYLTKNGAPMIRPMNDFYLYPNEPLYIQAKDSDFRLT IRYPNRFV >gi|308151776|gb|GL476246.1| GENE 44 39096 - 40553 1204 485 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 485 1 485 485 960 99.0 0 MLMALDLKRTYTAILDNAYQVSYEKIENKIGSLDFTMPLDDPKNEFIAEMQWVELTDNEN EYIGLYRVMPTTIKKDANNNQIHYSATEALCTLGDTVLFGCHEIKNKTTKEAIQFLLNKQ KTKHWVLKKCDFSRKLTYKWENENGLVEPLFSIPADFEEEYLWQWNTEVYPFELSLVKPP TEPVARIQEGYNMQGFEIERNPKMLINRIYPLGSGEGVNKVNIRSVNQGVPYLENKAAID RYGLLESIWVEQRFSDPKALKENALRMLEEWTKPQVSWVVTAADLIKLTDQPLAIDRLRL GTVIMINTNEFGSVNLRIKKESKKDVFGAPQDIQLELGNLQETIHSTMTAFSRKQEISET YAQGATTLLNRSIQGELNKTQPVELNLYFDEDILYVNTAELTFKATAKGPSHSVTNIDLV VDGKKLPQLSLQQQRLNILSYLRKTTDGKIERGNHTLQFFSHQPLWLDASVICRVYIQSQ LGGQF >gi|308151776|gb|GL476246.1| GENE 45 40586 - 42355 1604 589 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 589 1 589 589 1014 94.0 0 MSVEHIEELDTLNQGRLKINAILDQSNASAEKVDAYQVQLTNGISEAKNIADEAGKEAVQ IATDAGNQANETANQAMNNAKTAITIAGNAVSTANNNKQEFDTLRNDFDQLVAEAGDSNP EIVQARTDTQGIKQATLANRLQIDLNDRMTKADGISLLAKPTTVKLKLDFNGKTAGNTAT NANSYSTDFTAKILKKPTDVWEEVSQADYNKMASRDDEGVKTGSTQSGVIPQQLAAFNLV EAAKKLIPQMFETFTTDEAVAFIRQNVQFFTINQRVKAAAPNNQTIKIATYLPTTDNWVT QIQESAKEFGDFSIQINDQNFITDEGFIYLMSYTDSSNGVTPASVEVDYVGLHIGLSVDA QAVLAKSGFVQAEQLNTHVENQDNPHQVNAEQVGLGNVENYGFASDSEAVAGTLTSKYMH PKNVAEAIKGQAVTQTGDQEIAGVKNFMTMPTVNGVPLESSRMAIYEASGVGEVEAKYQA AFNKDNMKFVLIRVGNRVDAFVRCNLSDPTKLNNQVVKVFNVPTGYSINSVIKRNTWNIP LTAVQYNFPQPICAALYEMDNKGIIFCSNRAGNIYLQGSWYTDDPFPTK >gi|308151776|gb|GL476246.1| GENE 46 42379 - 42774 466 131 aa, chain + ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 15 124 12 122 140 66 36.0 9e-12 MERYLNTITMLLSIFGGIVVRLLGGLDQLLDVFLFLIIVDFITGWIKAIATKELSSRIGM LGIAKKVTMLFVVAVAVRVEKVVGNNLPIREMVLIFYIANEGLSFFENIATFIPMPKKLK ELFIQLKNKDD >gi|308151776|gb|GL476246.1| GENE 47 42920 - 44017 1389 365 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 50 200 26 177 318 83 36.0 8e-16 MFKKLMIQLALVIGLSLTIPMTTCAYTIEADPINFAYFPGSASNELIVLHESGNERNLGP HSLDNEVAYMKRNWSNAYVSYFVGSGGRVKQLAPAGQIQYGAGSLANQKAYAQIELARTN NATTFKKDYAAYVNLARDLAQNIGADFSLDDGTGYGIVTHDWITKNWWGDHTDPYGYLAR WGISKAQLAQDLQTGVSETGETVIIQPGKPNAPKYQVGQAIRFTSIYPTPDALINEHLSA EALWTQVGTITAKLPDRQNLYRIENSGHLLGYVNDGDIAELWRPQTKKSFLIGVDEGIVL RAGQPSLSAPIYGIWPQNTRFYYDTFYIADGYVFIGGTDITGARIYLPIGPNDGNAQNTW GSFAS >gi|308151776|gb|GL476246.1| GENE 48 44171 - 45091 1080 306 aa, chain + ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 303 1 299 304 312 53.0 6e-85 MDGILPLWKERGMTSHDCVFKLRKILHTKKIGHGGTLDPDVEGVLPICVGKGTKVIEYMV DSGKTYEGEITLGFATTTEDVSGEIVEKKPVTAPLSTEQIDQAMAEMTGEITQIPPMFSA VKVNGKRLYEYARNGEEVERPQRKAMIYSFERTSEPIFNESAQTQSWRFKVVCGKGTYVR TLSVDTGKKLGYPAHMSDLTRTASGGLQAAQCLTLEEVAKQMAAETIDQCLLPIETAVEQ FPRIDLSDELYQKVKNGMRLHKKELGIKAMPESLVALFYQNQVVSLYMPHPMHDKLLKPS KVLRNN >gi|308151776|gb|GL476246.1| GENE 49 45117 - 46067 611 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 310 1 312 317 239 41 2e-62 MQVIQLHHPYEPNQIPNEEVVMVLGFFDGVHKGHQKVIETGKKIAEEKGLKLAVMTFNQH PSIVFQKVLPENMKYLTSLEQKERLMANLGVDILYIVEFTSAFAQLKPQDFVDQYIVNLN SAVAVSGFDYTYGPKEIAGVKQLPTYAQGRFEVVTVPKEEMTGAKISSTRIREKMEAGEM EEVTELLGYIYETEGTVVHGDARGRLLGFPTANVKVKSTVRLPRIGVYAVQIEVGGKWYV GMGSIGHNDTFGKGRDLTVEVYILDFHQDIYGEQVVVRWNHYLRDQVKFNGAEALIDQLK QDERDTADYFQQSEDK >gi|308151776|gb|GL476246.1| GENE 50 46067 - 46663 594 198 aa, chain + ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 1 198 17 207 217 118 34.0 7e-27 MKIRQEKPAEYQAVERLTYQAFKELNLTENWRPTEHFIVHLLRESADFIPELSLVSETDQ GKLTGHIMSSKAKLRLPDHTEKAVLTVGPLSVHPEAQNTGVGSALIKHSVQKAKELGIGG LIILGHPTYYTKFGFVPATTFQITLPEKETSEALLALELLPGYFGTSGGEWHFSTCFAYP ETHPAELEAFEADLGINE >gi|308151776|gb|GL476246.1| GENE 51 46813 - 47136 324 107 aa, chain + ## HITS:1 COG:lin0727 KEGG:ns NR:ns ## COG: lin0727 COG1695 # Protein_GI_number: 16799802 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 103 5 104 110 114 63.0 5e-26 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI AEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKMEG >gi|308151776|gb|GL476246.1| GENE 52 47140 - 47481 468 113 aa, chain + ## HITS:1 COG:lin0728 KEGG:ns NR:ns ## COG: lin0728 COG4817 # Protein_GI_number: 16799803 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 108 11 104 107 73 39.0 1e-13 MSNFKALIKKVVGDKKEYKEYKRRIAALPAEYRQVFQEIEKYAWHFSDHSGANMFNALTD LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEVAGKWTDKQKEKLNHQFSKQ >gi|308151776|gb|GL476246.1| GENE 53 47507 - 47767 274 86 aa, chain + ## HITS:1 COG:no KEGG:EF1299 NR:ns ## KEGG: EF1299 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 129 100.0 4e-29 MVENFFKEGKLLVIPKKNAKKVQVFQRVANQFEFGKEYTEKEVNQRLREIYEDYALLRRY LVDYQYLERDKFGKIYQKCEQHTKII >gi|308151776|gb|GL476246.1| GENE 54 47926 - 49101 1074 391 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 11 378 23 405 434 205 35.0 1e-52 MNLRTLGLTKILLTFIILSIIGALMIYSASSYDLLMQGVKPTAVFIKQGIIMCLSWVLMF VIYKVRLEVLFNKKIAIGLLLVSILLLLMVRLPFFGVAANGAQRWISLFGIQFQPSELCN FAIIYYLSCYLGEKENGLTTKQLRKQWLFVLVVAFLVLIQPKVGGAILILVIGSVLIFSA SIHAKFSVIAAGIVVASAALLSKIIIFLGDHRYLPHFFAHVYDRLVVLKNPFLSFHDRGF QPSMAYLAMYNGGFWGTGLANGMVKKGGLPEGQTDFIFAVIVEELGLIGGLLLLFLLLFL AASILRSSCVIKNHCYGLFLLGGGTLILAQTAINIGGVLGLIPMTGIPLPFVSYGGTSYL IFSVALGIVIKIIANERRQLNGQYKKIQLTS >gi|308151776|gb|GL476246.1| GENE 55 49067 - 50215 956 382 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 375 7 381 414 247 39.0 3e-65 MVNTKKFNLHLNYDLLLPIFLLTLLSSGVQYWIAVNEGKDGTVPALKQLFFIFVGYAGMF LASRLSQKFIWKVAPFFYGFSLILMSALYFSYDKGMYLLTGTKRWLDLGFIKFQPSEIAK IAFILMLAKIIVQHEQQDWSDKWRSDKQLLKKIVAVSVPVFFLMAVQKDFGTSLVFVTII LSLLVISGIDRKILIIIFSALATLGVVLILLVFTEWGHKVLFFLHFKQYQLDRILAWIHP YDYVDKISYQQVQGLLAIGSGGLFGKGVHGIEVYVPVRESDMVFTFIGEAWGFVGSATVV FLYFYLFYQVLVAGLRSNSRFCMYICVALIFSLVFQTVENIGAVIGLLPLKGIPLPFLSQ GGTSLVMAITSLGFVKGREAAT >gi|308151776|gb|GL476246.1| GENE 56 50277 - 51164 865 295 aa, chain - ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 244 6 241 299 84 27.0 3e-16 MELFRLHYFLELCKVKQFTKAAENLAISQAALSKQIKILEATLGAELFNRQGQTTTLTPA GLILEKYCWRITNELVSIEEELKEINHSSNHIYVATYLCDLEYKLNDLLMTTLTDRSSNL QVHTIITENILQSLETMDADFGISFADLPLPEHIGKIDLFTANYQFILRNDHPALAKATT EEILKELTMYPFVRLNTEFSEQNKLTNWLDTTFSNFSPEKVIQVDTLSLITHLVSHSDSF AIVPEYTNIQLLDNSIHTLTYQELPKRNMAVYYLKERYMSRQLQQLLAECQKQFQ >gi|308151776|gb|GL476246.1| GENE 57 51188 - 52063 865 291 aa, chain - ## HITS:1 COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 247 1 247 299 94 29.0 2e-19 MKLQQLEYFMAVSKYASFTLASQKLHTSQPYLSTQLKELERELGASLILRDKKHCRLSPA GEVVAKRTEMIFALIKEAQEEINELVTQGSTTTIRIGTNLIDIDKAFGEVLLLFNQSYPY VSIDFKYYYDLETALETDLIDIGIGIFLDTSIPLEKELIYTESYLLCVNKNHPLAHADSV TIDEIRSLPFAAYSDQVYEKKVFKRWERKINWENRQIVIELPSLHLVLDMVQREKACSIL PYSLTDELNRRNLVGIPLEDSPERAIYLVQNNHHGHCEAHRYLFEQLRYLF >gi|308151776|gb|GL476246.1| GENE 58 52542 - 52631 67 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEDEPIVNSSQQQINEVKENGKENASLGP >gi|308151776|gb|GL476246.1| GENE 59 52600 - 55260 2572 886 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 20 886 33 910 910 923 53.0 0 MEKKMRHLGHDYSYKKFAHSEAEKVLQRFGSTWDGIKHQDIEELQERYGRNKIMNEKKAS RLRLFIKSYITPFTLVLLALATISFFTEYVYAAPEEKDVTGVLIMLAMVILSGTMSFVQS VKSSNAVEKLQNMIKVTATVIRDKKQMEIPIEEVVCGDLVQLSAGDMIPADLRLIQSKDL FVSQSSLTGESFPIEKHATHQKDSDQIDTEYDNLLFLGTNVISGTGLGIVIKVGNQTLFG RMASDNGEEQQQTSFETGINKTTWVLIRFMLVITPTVFLINGLTKGDWVEALMFAIATAV GLTPEMLPMIVTTNLVKGSREMAKEGTIMKNVNAIQNFGGMDVLCTDKTGTLTQDKVILE YHYNIGCQEDQKVLDLAFLNSYFQTGLRNLMDNAVIQAATQESDIQSDDFYKVDEIPFDF NRRRMSVIIKEFKTRETRLITKGAVEEMLLVCTQVLLDGEIVPLTETLRQKITKDVEALN RDGLRVLAIADKKVEAAEWEYTTKDESELILQGYLAFLDPPKETAAAAIHALHQHNVAVK VLTGDNQYVTHSVCKEVGLAGEKIITGNELQQLNQEELRKTVQAYNIFAKITPDQKVRIV NALTENGQTVGFLGDGINDAGAMRAADVGISVDTAVDVAKESADVILLRKDLMVLEKGIL SGRRVFTNTMKYVKLTASSNFGNVFSVIPASIFLPFLPIAPIQSLLLNLIYDTSCMSVPW DKVDEEYVEKPKKWEPKSIGNFMRWFGPTSSIFDIVTYLFMYFIVCPAILGGSFFELNGA DQLLFIGIFHAGWFIESLWSQMLVLHFLRTEKMPFLQSSASGIMTLVTTAGIVLGTVLPF TAFGAELGFVGLSPSYFLYLIPTIVAYLALVAFIKVLYVKRYGQLL >gi|308151776|gb|GL476246.1| GENE 60 55468 - 56652 1209 394 aa, chain + ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 17 389 13 385 385 426 54.0 1e-119 MTKTNQLSTSTPMFDRSAYIHIPFCEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQA LYPEQEMKTIYIGGGTPTSLSAKQLDVLLKGVREQLTFDDRNEFTVEANPGDLTQEKLQV MKNYGVNRLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSIDLIYALPGQT LESFRDTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAM EKKGRHQYEVSNFALTGKESQHNLAYWNNDHYYGFGAGASGYLGQTRYKNHGPIQHYLKP LRENQLPIVETEELTRLNQIEEELFLGLRKKVGISKQKFQQKFQEPIEAIYGEVIQRLIK EELLIEEADILRLTKKGLFVGNNVFEAFLLSEKE >gi|308151776|gb|GL476246.1| GENE 61 56878 - 57921 1198 347 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 341 345 265 40.0 9e-71 MITERQQNILRLIIQNYTNTGLPVGSKKLMEDGIASSSATIRNDMKALEEYGLLAKTHSS SGRIPSMAGYRYYVDHLLQPTQVEENELRRIRQSFGKEFHEINDIIRQSAEILSELTSYT AFSLGPEVKERKLTGFRMVPLNDRQVLAIIVTDKGNVENQVFAIPAAVSSQDLEKMTQII NDKLVGQPLLTVYHRLRTEIPMILHRYFQTPEGMMNLFDEMLGHAFEEKVFVGGRMNLLD FGIKQDIEQLKSVYSFMQNSDELTHLLNGSATTENPIVFRIGSEIGNNLLEDMSMITATY EVSGHGKGTIALLGPTSMPYSKIFGLVDTFRHELASQLGDYYRFLGN >gi|308151776|gb|GL476246.1| GENE 62 57976 - 58515 858 179 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 25 177 24 172 174 132 55.0 3e-31 MSKKEEKQEELQEEMEAVDAAGVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNR NKNERELLVRYRSQDLGKKILPSIDNLERAMAIEVSDEQGESLKKGISMVLESITVALKE EGIEEIPAMGETFDPNLHQAVQTVPASEETPADTIVEVLQKGYKLQDRVLRPSMVIVAQ >gi|308151776|gb|GL476246.1| GENE 63 58575 - 60404 2592 609 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 607 1 607 611 857 81.0 0 MSKIIGIDLGTTNSAVAVLEGGEAKIIANPEGNRTTPSVVSFKNGEIQVGEVAKRQAVTN PNTISSIKRHMGEAGYKVDVEGKSYTPQEVSAMILQYLKGFAEDYLGEKVEKAVITVPAY FNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDEKILVFDLGGGTFDVSIL ELGDGVFDVLSTAGDNNLGGDDFDNKIIDYMVAEFKKENGIDLANDKMALQRLKDAAEKA KKDLSGVTSTQISLPFITAGEAGPLHLEMNLTRAKFDELTSDLVERTKVPVRQALKDAGL NPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIEVSFDIDKNGIVNVRAKDLGTQKEQTITIKSSSGLSD DEIERMVKDAEANAEADKQRKEEVDLRNDADALLFTVDKTLKELEGKVDAEEVKKAEDAR DELKAAIEANDIEQMKAKRDSLNEIVQNLTVKLYEQAAQQQAQENPEAAQGGADDVVDAD FEEVNGDDK >gi|308151776|gb|GL476246.1| GENE 64 60519 - 60641 118 40 aa, chain + ## HITS:1 COG:no KEGG:EF1309 NR:ns ## KEGG: EF1309 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 62 100.0 5e-09 MKELWYDYNDVKQAENTYSQLVTLIQGVTDNPTRETESNR >gi|308151776|gb|GL476246.1| GENE 65 60696 - 61865 1567 389 aa, chain + ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 380 5 379 379 474 71.0 1e-133 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDP QKKAAYDQYGHAGTDPNYGGGAGGFGGFGGGGFSSSGFGGFEDIFDSFFGGGGGRSVDPN APRQGADLQYTIQLKFEEAIFGVEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGT INVERQTPLGRMMSRQTCDVCHGTGKEIKEPCPTCHGTGHEKKAHTVKVNVPAGVEDGQQ MRLANQGEAGTNGGPYGDLYVVFRVEDSDIFDRDGAEIYYDLPVSFVQAALGDEVTVPTV HGDVKLKIPAGTQTGTNFRLRGKGAPRLRGGGNGDQHVKVKLITPKNLNEEQKDALRAFA KAGGQNVTEQQEEGFFDKMKDAFGGKKKK >gi|308151776|gb|GL476246.1| GENE 66 61970 - 62647 440 225 aa, chain + ## HITS:1 COG:SP1989 KEGG:ns NR:ns ## COG: SP1989 COG1396 # Protein_GI_number: 15901812 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 5 168 3 165 299 117 39.0 1e-26 MVLDIGKNIQMLRCKKGLSRESLCEDESKLSVRQLTRIENENANTTISVLNFIAKQLNVA VVNLIEQKSELPRDYLKLKHKVFKTYPVIGSLERLEYKEGILELIYEKYFFDLPLEEQLT IELESSIISTVVTKNVDYMENLLKNNFKRLIEPEVYGINELLLSKIYFEMLHSYGWNEGE FSKILKKLICSINYLYDLELVILDGVFTSVASICFRKKDMRIYTI >gi|308151776|gb|GL476246.1| GENE 67 62710 - 62871 150 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315169992|gb|EFU14009.1| ## NR: gi|315169992|gb|EFU14009.1| conserved hypothetical protein [Enterococcus faecalis TX1342] # 1 53 248 300 300 93 100.0 6e-18 MLEGKYEVVVNKNLGKADNKYLTAINIAELLSDYLLKEKILDEWEKDKKIIMP >gi|308151776|gb|GL476246.1| GENE 68 63041 - 63184 172 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKMSEISMVEKKVMENTKSKVKKEVSNLSKVYSCCAKTQRQVNIHI >gi|308151776|gb|GL476246.1| GENE 69 63247 - 63777 387 176 aa, chain + ## HITS:1 COG:RC0629 KEGG:ns NR:ns ## COG: RC0629 COG0466 # Protein_GI_number: 15892552 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Rickettsia conorii # 29 149 628 746 779 61 36.0 7e-10 MFYVPAISEDRFVEYFEIQIAQSDTTVITGLVGSQIKDSVFIAKTLLKNNKQKFGLNEIK DFHIHFTNNDIFKDGPSASLGIFMAILYYQKYHTKMKLINSDFTFLVTGDVDLRGNVKEI GGLKEKRKFFRKENFSLFVIPKEGNEVLRYSDELSCDNIYDTLSIIEKRASHVEKI >gi|308151776|gb|GL476246.1| GENE 70 63761 - 64276 206 171 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291297|ref|ZP_07571181.1| ## NR: gi|307291297|ref|ZP_07571181.1| hypothetical protein HMPREF9509_01603 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01603 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 171 1 171 171 278 100.0 1e-73 MLKKSNYIFVERGKETVRIINYFSLTVFEVPYQLWNRIDDWVKYDLELVEKLVANGILVQ KKYKEENYLEYIYNSRFFENNYFIKIENINDLKELNKICKTYNLYKNICIEMTFETDGYH FENFNLFIRNSSTLKLKNNKNFFVKKYNDCKQIYDYPEELLFFLVCFLHCK >gi|308151776|gb|GL476246.1| GENE 71 64403 - 64573 133 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291299|ref|ZP_07571183.1| ## NR: gi|307291299|ref|ZP_07571183.1| phage putative tail component protein [Enterococcus faecalis TX0411] phage putative tail component protein [Enterococcus faecalis TX0411] # 1 54 4 57 416 96 90.0 5e-19 MERLSKYVVKTRINKSQTALYNMLTKQHMLIDNENRDSMYPELEHQFYMTPIVKLS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:36:20 2011 Seq name: gi|308151775|gb|GL476247.1| Enterococcus faecalis TX4000 genomic scaffold Scfld6, whole genome shotgun sequence Length of sequence - 643 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 45 - 117 88.0 # Val TAC 0 0 + 5S_RRNA 49 - 105 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 124 - 196 88.6 # Lys TTT 0 0 + TRNA 213 - 294 71.9 # Leu TAG 0 0 + TRNA 301 - 376 98.3 # Thr TGT 0 0 + TRNA 381 - 452 85.5 # Gly GCC 0 0 + TRNA 468 - 553 68.1 # Leu TAA 0 0 + TRNA 568 - 641 71.5 # Arg ACG 0 0 Predicted protein(s) Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:36:38 2011 Seq name: gi|308151774|gb|GL476248.1| Enterococcus faecalis TX4000 genomic scaffold Scfld9, whole genome shotgun sequence Length of sequence - 56462 bp Number of predicted genes - 55, with homology - 55 Number of transcription units - 29, operones - 15 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 228 - 275 4.0 1 1 Op 1 . - CDS 284 - 646 384 ## EF2893 hypothetical protein 2 1 Op 2 . - CDS 720 - 1106 188 ## PROTEIN SUPPORTED gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 - Prom 1216 - 1275 6.5 + Prom 1092 - 1151 7.6 3 2 Tu 1 . + CDS 1272 - 2438 896 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 2442 - 2480 8.6 - Term 2429 - 2468 8.0 4 3 Tu 1 . - CDS 2472 - 2678 258 ## EF2896 hypothetical protein - Prom 2744 - 2803 6.9 - Term 2770 - 2830 13.0 5 4 Tu 1 . - CDS 2843 - 3433 899 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 3462 - 3521 6.0 + Prom 3449 - 3508 5.1 6 5 Tu 1 . + CDS 3638 - 4648 994 ## COG0492 Thioredoxin reductase + Term 4678 - 4728 15.4 + Prom 4706 - 4765 5.8 7 6 Tu 1 . + CDS 4797 - 5759 1002 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 5762 - 5830 8.1 - Term 5758 - 5808 5.1 8 7 Tu 1 . - CDS 5826 - 7379 1782 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Term 7399 - 7457 12.0 9 8 Op 1 . - CDS 7477 - 8757 1699 ## COG1653 ABC-type sugar transport system, periplasmic component 10 8 Op 2 . - CDS 8781 - 10070 1273 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 11 8 Op 3 38/0.000 - CDS 10054 - 10872 766 ## COG0395 ABC-type sugar transport system, permease component 12 8 Op 4 10/0.000 - CDS 10877 - 11752 796 ## COG1175 ABC-type sugar transport systems, permease components 13 8 Op 5 2/0.000 - CDS 11752 - 12822 1089 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 12962 - 13021 3.7 - Term 12993 - 13023 1.3 14 8 Op 6 . - CDS 13032 - 13970 946 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 13994 - 14053 7.6 - Term 14112 - 14148 -0.4 15 9 Op 1 . - CDS 14173 - 14484 549 ## COG4841 Uncharacterized protein conserved in bacteria 16 9 Op 2 1/0.273 - CDS 14557 - 15222 942 ## COG0569 K+ transport systems, NAD-binding component - Prom 15250 - 15309 8.2 - Term 15252 - 15317 17.6 17 10 Op 1 19/0.000 - CDS 15326 - 15958 840 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 18 10 Op 2 7/0.000 - CDS 15933 - 17036 866 ## COG4585 Signal transduction histidine kinase 19 10 Op 3 . - CDS 17033 - 17764 729 ## COG4758 Predicted membrane protein - Prom 17784 - 17843 8.4 - Term 17866 - 17903 2.0 20 11 Op 1 3/0.000 - CDS 17915 - 18394 799 ## COG0782 Transcription elongation factor - Prom 18486 - 18545 15.3 - Term 18592 - 18637 9.8 21 11 Op 2 . - CDS 18655 - 20040 1408 ## COG1559 Predicted periplasmic solute-binding protein - Prom 20074 - 20133 10.8 22 12 Tu 1 . - CDS 20248 - 20901 815 ## COG0546 Predicted phosphatases - Prom 20939 - 20998 2.2 - Term 20946 - 20991 2.5 23 13 Op 1 . - CDS 21000 - 22148 1423 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 24 13 Op 2 . - CDS 22165 - 22656 476 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - Prom 22813 - 22872 3.2 - Term 22803 - 22856 8.4 25 14 Op 1 35/0.000 - CDS 22899 - 24668 217 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 26 14 Op 2 . - CDS 24665 - 26392 243 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 27 15 Tu 1 . + CDS 26621 - 27007 376 ## COG2832 Uncharacterized protein conserved in bacteria + Term 27180 - 27216 -0.4 + Prom 27210 - 27269 7.4 28 16 Op 1 7/0.000 + CDS 27313 - 27525 251 ## COG5503 Uncharacterized conserved small protein 29 16 Op 2 . + CDS 27527 - 29212 1962 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 29226 - 29273 11.4 - Term 29266 - 29299 3.1 30 17 Tu 1 . - CDS 29318 - 29518 390 ## COG1278 Cold shock proteins - Prom 29585 - 29644 7.8 31 18 Op 1 . - CDS 29672 - 30370 627 ## COG2003 DNA repair proteins 32 18 Op 2 . - CDS 30426 - 31082 707 ## COG0637 Predicted phosphatase/phosphohexomutase 33 18 Op 3 . - CDS 31069 - 32391 1475 ## COG0285 Folylpolyglutamate synthase + Prom 32445 - 32504 6.1 34 19 Op 1 . + CDS 32640 - 35204 2433 ## COG4485 Predicted membrane protein 35 19 Op 2 . + CDS 35197 - 35796 406 ## COG0398 Uncharacterized conserved protein + Term 35803 - 35845 10.1 - Term 35786 - 35837 15.5 36 20 Tu 1 . - CDS 35842 - 38484 3362 ## COG0525 Valyl-tRNA synthetase - Prom 38522 - 38581 8.5 - Term 38647 - 38695 -0.6 37 21 Op 1 . - CDS 38877 - 39365 698 ## COG2077 Peroxiredoxin 38 21 Op 2 . - CDS 39429 - 40076 569 ## COG2344 AT-rich DNA-binding protein - Prom 40104 - 40163 4.5 - Term 40152 - 40201 11.5 39 22 Tu 1 . - CDS 40206 - 41420 1570 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase - Prom 41465 - 41524 7.0 - Term 41508 - 41558 11.2 40 23 Tu 1 . - CDS 41580 - 42893 1655 ## COG2252 Permeases - Prom 42997 - 43056 6.3 - Term 42928 - 42985 2.1 41 24 Op 1 1/0.273 - CDS 43075 - 43812 926 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 42 24 Op 2 . - CDS 43812 - 44393 722 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 44449 - 44508 5.8 + Prom 44408 - 44467 6.7 43 25 Tu 1 . + CDS 44501 - 45448 846 ## COG0583 Transcriptional regulator + Term 45635 - 45678 -0.4 - Term 45353 - 45399 6.6 44 26 Op 1 1/0.273 - CDS 45404 - 46291 1177 ## COG4975 Putative glucose uptake permease 45 26 Op 2 6/0.000 - CDS 46312 - 46707 529 ## COG1869 ABC-type ribose transport system, auxiliary component 46 26 Op 3 13/0.000 - CDS 46723 - 47634 1117 ## COG0524 Sugar kinases, ribokinase family - Prom 47659 - 47718 6.7 47 26 Op 4 . - CDS 47732 - 48727 991 ## COG1609 Transcriptional regulators - Prom 48777 - 48836 4.2 + Prom 48647 - 48706 6.0 48 27 Tu 1 . + CDS 48939 - 49913 637 ## COG0657 Esterase/lipase + Term 49916 - 49970 16.3 - Term 49897 - 49966 19.0 49 28 Op 1 11/0.000 - CDS 49978 - 51345 1753 ## COG3037 Uncharacterized protein conserved in bacteria 50 28 Op 2 2/0.000 - CDS 51360 - 51659 189 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 51 28 Op 3 . - CDS 51661 - 53670 1730 ## COG3711 Transcriptional antiterminator - Prom 53771 - 53830 8.0 - Term 53785 - 53829 11.6 52 29 Op 1 . - CDS 53836 - 54060 286 ## EF2967 hypothetical protein 53 29 Op 2 . - CDS 54107 - 54505 236 ## EF2968 cell wall surface anchor family protein 54 29 Op 3 . - CDS 54489 - 55622 1248 ## EF2969 hypothetical protein - Term 55637 - 55674 3.1 55 29 Op 4 . - CDS 55710 - 56399 1102 ## EF2970 hypothetical protein Predicted protein(s) >gi|308151774|gb|GL476248.1| GENE 1 284 - 646 384 120 aa, chain - ## HITS:1 COG:no KEGG:EF2893 NR:ns ## KEGG: EF2893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 224 100.0 7e-58 MSNKKVAGTIILNLNDGSKKFLMHPIGEAIEFAMAKVSDEMTGLASMLQWFKEEVQLDVT SISLVELTNAHINKENVPLFVFEMDEQALKNEMDKDYTWVAPAELKTIWSKYHIEGVPMF >gi|308151774|gb|GL476248.1| GENE 2 720 - 1106 188 128 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)] # 1 106 186 291 304 77 35 2e-13 MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHISEVQAGFTKNIHGLLTVGQ KVTVQVIDVDEYSQKISLSLRTLEDKVHSVNHRRKKYFTDKNKKIGFATLGKELPEWIDE AMDKLLEK >gi|308151774|gb|GL476248.1| GENE 3 1272 - 2438 896 388 aa, chain + ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 388 2 387 387 349 41.0 6e-96 MFNFNETIDRRHTNCVKWDTVETSYHEKDLLPLWVADMDFKVHQPILDALSQVIEQGILG YAVTPNELYQAIQDWQRQHHQLIVEKEEILFNSGVVPSLATAVQAYTASADSVMICDPVY PPFADVVKQNERRLVRHSLLEVNGHYEVDLVKMEQQIIEEKVKLLLFCNPHNPGGRVWTK EELLAIGRLCQKHQVTVVSDEIHQDLIFKPHTFTSFTVADEAFKEFTVTLTAATKTFNLA GIKNSMLFIPNEKLRQSFVSLQDKNHQGGINTFGYVGTAAAYQTGEEWLTALLDYLKENI DFALSFFREEMPSVRVMEPEGTYLLWLDFSSYSLTDRELRDTLIHKGKVVLNPGISFGPQ GSQHMRLNLACSKETLEEGLLRIKKAFN >gi|308151774|gb|GL476248.1| GENE 4 2472 - 2678 258 68 aa, chain - ## HITS:1 COG:no KEGG:EF2896 NR:ns ## KEGG: EF2896 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 118 100.0 9e-26 MLEKYRYPMALALFAVILPFIGTFFTYVDQQGIVHEPGFYTIIIGEILLLFSGIWFVRVY LAKRKRKN >gi|308151774|gb|GL476248.1| GENE 5 2843 - 3433 899 196 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 255 67.0 3e-68 MSQFPQLDLENAKGPKAVIKTNRGDITVQLFPEQAPKTVKNFVELAKKGYYDGVIFHRVI PDFMIQGGDPTGTGMGGESIYGEAFEDEFSRDVFNLRGALSMANAGPNTNGSQFFVVTNQ NVPAQMMSQLEDAGFPEEIIEAYKQGGTPWLDFRHTVFGHVVDGMDVVDEIGGVQRDAQD RPTFDVVMDTVEIIGE >gi|308151774|gb|GL476248.1| GENE 6 3638 - 4648 994 336 aa, chain + ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 1 331 1 331 331 439 61.0 1e-123 MSDEKDIYDLTIIGGGPVGLFAAFYAGIRKAKTKIIDSLPQLGGQLTMLYPEKYIYDIPG FPAIKAGELIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLETTKGTHYSKTVIFAIG NGAFQPRRLAIENVEAFEGESIHYYVTDMKKFAGKKVAIAGGGDSAIDWALMLENVAEEV SIIHRRPQFRGHEHSVEQLEKSSVSIRTPYIISDILKENETFTGIQLTETKGDQTLDLPL DDLIINYGFTSSLTHLKEWGLDVSRNAINVHSDMSTNIPGVYAVGDICSYEGKVKLIATG FGEAPTAVNNALHYLRPDARRQPVHSTSLFENGVPK >gi|308151774|gb|GL476248.1| GENE 7 4797 - 5759 1002 320 aa, chain + ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 36 320 35 316 316 196 33.0 4e-50 MNQPIIYLNEVFNEEQLEQVKAVAPNYLVKTSTDHLSSAEEEAIEIMLGWHKEIGPRLLA SDTSHLKWIQLISAGADYMDFDKLREKGILLSNGSGIHSVSISEHVLGVLLAHTRGLQES IQQQMQHTWNQTAPSYQQLSGQKMLIVGTGQIGQQLAKFAKGLNLQVYGVNTSGHVTEGF IECYSQKNMSKIIHEMSIVVNILPLTETTKHLYNQALFEKMAPETIFVNVGRGASVATND LITALNNKTIAFAALDVFEEEPLPEDSPLWEMQNVLLTPHISGMTPKFKSKLLAIFIPNL NQFVTDQTLVKNQVSLKKGY >gi|308151774|gb|GL476248.1| GENE 8 5826 - 7379 1782 517 aa, chain - ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 516 1 518 519 618 56.0 1e-177 MQIKILATSDMHGYIMPTSYSEKKMDLPFGTAKAATMLKKLRASAKGPVFQIENGDFIQG SPLSYYVRKAETHSVEAITKIINQMNYDVSILGNHEFNYGLDYLKETIASYQQPVLAANI LGKDGQPYFGQPYVIIEKQGVKVAILGVTTQYIPHWEQPATVKDLTFKSVVETAAEYVPK LREEADLVVVAYHGGFEKDLETGEPTELLTGENEGYDLLEKVPGIDALVTGHQHREIATK LNGIPVIQPGFRGAFVGEITLEIEPMAKGYHVIGSDAAIHPVGNEQPDAEVLSLTTALHD EVEEWLDQPVGNVEGDMTIQNPNAVRLKEHPYIEFINNVQMASSGTDISGTALFNNEGKG FNNQITMRDIITNYIYPNTLAVLRVTGQDLREALEQSATYFVLEKGQPIFNPKYVDPKPQ YYNYDMYEGIEYTLDLRQPFGERVTKLNYHGKAVQAEDVLEIVTNQYRAVGGGNYQMFQP EKIIREIQIDMTELIAEYLKKHPIIQASTNDNFKVIW >gi|308151774|gb|GL476248.1| GENE 9 7477 - 8757 1699 426 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 403 22 389 419 177 31.0 4e-44 MKFKTLATTVLATAAIFALGACGNSNGAKESNDIVKEVKEDTTITFWHAMNGVQEEALTK LTKDFMKENPKIKVELQNQSAYPDLQAKINSTLTSPKDLPTITQAYPGWLWNAAQDEMLV DLKPYMDDDTIGWKDAEPIREVLLDGAKIDGKQYGIPFNKSTEMLFYNADLLKEYGVEVP KTLEELKEASKTIYEKSNKEVVGAGFDSLNNYYAIGMKNKGVDFNKDLDLTSKDSQEVVD YYRDGIEAGYFRTAGSDKYLSGPFANKKVAMFVGSIAGAGFVQKDAEAGGYEYGVAPRPE KINLQQGTDIYMFDSATPEQRTAAFEFMKFLATPDSQLYWAQQTGYMPILESVLHSDEYK NSKTTKVPAQLENAVKDLFAIPVEENADSAYNEMRTIMESIFASSNKDTKKLLKDATSQF EQAWNQ >gi|308151774|gb|GL476248.1| GENE 10 8781 - 10070 1273 429 aa, chain - ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 425 4 510 514 99 26.0 1e-20 MESKAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLV PELKDLYDPRLGYEYHGAEDKEYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP DHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDL VQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYY YAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQY RVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERIL PERGEQIVL >gi|308151774|gb|GL476248.1| GENE 11 10054 - 10872 766 272 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 52 271 58 277 277 178 42.0 1e-44 MKKVLTIIAFVFLGILAVITLFPFVYMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQ KAPFLRYFLNTVFVSGVTTIATVVTAVLASFALTSLKFRFKNVVIALMISLLMVPYESII FTNYQTIAQLGLLNTYSALIIPFLTSIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIW RILVPMSKPALVTVGILTFISSWNSFLWPLLVTNEKKYRLLNNGLSAFATESGSDVHLQM AAATLTVIPILIIYLIFRKEIIRGVAKNGIKG >gi|308151774|gb|GL476248.1| GENE 12 10877 - 11752 796 291 aa, chain - ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 45 288 169 414 420 173 42.0 3e-43 MKKYNPENQPKAWLFLLPSLGIILLFSVYPLFRSLWMSFQKGSLINQRYAGLENYQRVLN DPIFYKALKNTALYAFAVVPIALIISLAIAWIIFEKVKHKSFFETIFFMPYVTSTIAIGI VFRYFFNGDYGIVNYVLGFFGIPSVNWLDNVQMSMPTLIIFGVWTSLAFNIIILLAGLRN IDEEHFKIAKMFGASDGEIFRRITFPQLVPTIAFLLTVNLIGAFKVYTQVYALFGGRAGI ANSATTAVYYIYDKFHIAGRPGIAMAATVILFVIILVVTFLQNKLLKKVGQ >gi|308151774|gb|GL476248.1| GENE 13 11752 - 12822 1089 356 aa, chain - ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 1 354 10 370 373 261 41.0 1e-69 MIEVIDLKKVFDNGFEALKSVNFTIEQGDLVCLLGPSGCGKSTILNLIAGLLHPSDGDIQ FRQQSVVKTAPKDRNIGFVFQNYALYPHMTVLENVMFPLTVGSKKVPKAEAQAIAEEYMK LTNIEELSHKKPGTLSGGQQQRVAITRALVQKPDVLLLDEPLSNLDARLRLKIREEIRRL VKEVGITTIFVTHDQEEALSISDKIILLNEGVIQQNDEPQNLYLEPNNLFVAQFIGNPII NLLSVEVKDGKMYHESFEIPLERFEQARFKMPMTDGKYTFASRPEDVVPTETGLFTTTTD LVELIGRERILRFTLGNEQVKSIVSVEEAIEEGDTLSFDFSYKKVFIFNEAGDRVY >gi|308151774|gb|GL476248.1| GENE 14 13032 - 13970 946 312 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 305 3 306 308 381 59.0 1e-106 MLSIVVPCYNEEAAIPLFFEEVEKISQQLSHSVEYIFVNDGSKDNTLAVLRQLYREHPEK VRYLSFSRNFGKEAGLYAGLKEATGDLVTVMDVDLQDPPELLPQMIEMIETSTDLDCVGT RRITRDGEPPIRSFFARMFYKLINRIAETEMVDGARDFRVMTRQMVDAILELSEYNRFSK GIFSWVGFKTEYIEFKNRERIAGETSWSFWSLLSYSIDGIVNFSETPLNIASYVGAFSCI GSALAMLVIIFRTLVNGDPTSGWPSMVCIVLFVGGLQLLCLGIIGKYIGKIFLETKKRPI YIVKESEKDSKK >gi|308151774|gb|GL476248.1| GENE 15 14173 - 14484 549 103 aa, chain - ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 95 1 95 95 76 37.0 1e-14 MKLEVTPKAQQWFKEETGVQPETGIRFFGKIYGKTPVHDGFSIAMSVEAPDEPMIKENLD GITYFIEETDDWFFKGYDLIVDYDEKNDEPRYQFEANQEDLTK >gi|308151774|gb|GL476248.1| GENE 16 14557 - 15222 942 221 aa, chain - ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 219 1 218 219 269 62.0 3e-72 MKQNFAIIGLGRFGGSICQTLVEAGQEVLAIDSSEDRVNEYMNIATHAVVANAQDEMTLR SLGIRNFDHVVVAIGEDIQASILVTLMVKEMGVPNVLAKAVNEYHARVLDKIGADMVVHP ERDMGIRIAHKFVSRNILDYIELSSEFSLAEVRVTNPKFYNKTLAELNFRQRFGLTVVAI RRSKTEVIASPDASEIVRENDNLLVIGDTADVDLLDEKMNG >gi|308151774|gb|GL476248.1| GENE 17 15326 - 15958 840 210 aa, chain - ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 210 1 210 212 297 79.0 9e-81 MIKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEM DGIDSTKAILKDWPEAKIIIVTSFIDDEKVYPAIEVGAAGYLLKTSTAHEIADAIRATYR GERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTV KTHVSNILAKLDVDDRTQAAIYAFQHGLAK >gi|308151774|gb|GL476248.1| GENE 18 15933 - 17036 866 367 aa, chain - ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 6 362 4 352 352 291 50.0 2e-78 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYLPLIVHIVLIS LLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLNKPTTSENQDHYLTEVEQDIW SIKNKLLEMSKELQLLNSRPQLMDGQTKEEILENERHRLARELHDSVSQQLFAAMMMLSA LNEQAQRTETPEPYRKQLAMVAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKEL QTKIKIELIWDVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIKVPVIKEETAS DQSNVSG >gi|308151774|gb|GL476248.1| GENE 19 17033 - 17764 729 243 aa, chain - ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 29 243 30 237 237 146 38.0 4e-35 MNNPWRFFIVAEALLFILALWQIVHNPGLAVLLTIGILLVAYVSRKASKTHFNNFQFVLG VVFIVIGAMNSTAVWFMLIFGVLFIGLKGFEISGVDIAERAPWRKKQMIMVETAAKEPKN GKRFKRRWFANERIGNNIYEWDDINIDLISGDTIIDLGNTLLPKEDNIIIIRKGFGRTRI LVPLGVAILLEHSTFYGTVRFEEEKYQLKNESLKIYSNDYDTNLRRLKIMTNTLVGDVEV IRV >gi|308151774|gb|GL476248.1| GENE 20 17915 - 18394 799 159 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 196 73.0 1e-50 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVEAN >gi|308151774|gb|GL476248.1| GENE 21 18655 - 20040 1408 461 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 48 457 102 521 524 317 43.0 4e-86 MANDNQNNQDPKSSLRDQVTGSLKGRNDGDQPDSSEKNDRSPQPSSDESQETASRTTQTR AGSRAARRRGKDKTTQTVEEPTPIETDEKPTNTKKQTRKKEDRLVGRIVLIVVSVLVLMM AIFGFTFYKYVDAGLQPLDKNNKKLVQVHIPEGSSNKQIAAVLEESNVIKSGMVFNYYVK FKNLTDFQAGYYQMSPSMTLDEIGEMLKEGGTPEPTKIADGKVTIPEGYDIDKIGEAIEK NTDFKKADFIALMKNEDFFNQMKAKYPDLLESAATAEGVRYRLEGYLFPATYDYYKKATL PEFVEQMIAKMNTVMEQYTPTIHAKNLTNQQVLTLASLVEKEGVKEADRKQIAQVFFNRL AADMPIQSDISILYALGEHKETVTYADLEVDSSYNLYKNTGYGPGPLDSPSEESIKAVLN PTPSDYLYFVADISTGKVYFSKTYEEHQVLVDQYVNNSSSE >gi|308151774|gb|GL476248.1| GENE 22 20248 - 20901 815 217 aa, chain - ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 1 215 1 214 216 182 45.0 4e-46 MYQTILFDLDGTITDSGSGIMRSILYATEQLGWPAPSEETLRSFIGPPLYESFLHMAPSA EAAQQAVGHYRAYYQRKGMFENHVYPGIPEVLTRLKEAGAKLYIATSKPEEFAKKIITHF DLDRYFTGIYGASMDGYRSKKADVIQYALTEAQLDPTKEAIIMVGDRNHDILGAQQNGLD SIGVLYGFGEETELQEAGATFLVQSPKGLGAILLQNS >gi|308151774|gb|GL476248.1| GENE 23 21000 - 22148 1423 382 aa, chain - ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 382 1 380 380 467 63.0 1e-131 MKKIKVMTVFGTRPEAIKMAPLIKVLEEQSQGFDSVVVVTAQHRQMLDQVLEDFQITPNH DLNIMKDGQTLTDITSRVLNLLTEVLVTEQPDIVLVHGDTTTSFAAALAAFYQQIPVGHV EAGLRTWQKYSPFPEEMNRQLVDVLTDIYFAPTTQSKDNLIKENHPEEHIYVTGNTAIDA MAYTVDAHYQNDLLEKIPTDQRIVLITMHRRENLGLPMANVFKAVRRLVMEHPEIEVIFP MHKNPKVREIVAEHLGELARVHLIEPLDVKDFQNFAAKSSLILTDSGGVQEEAPSLGVPV LVLRDTTERPEGVAAGTLKLVGTDEQVVYQEAKTLLTDSDAYHAMAHAQNPYGDGQASRR IVEAIAYEMQQSDKKPDTFTAK >gi|308151774|gb|GL476248.1| GENE 24 22165 - 22656 476 163 aa, chain - ## HITS:1 COG:CC2643 KEGG:ns NR:ns ## COG: CC2643 COG0663 # Protein_GI_number: 16126878 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Caulobacter vibrioides # 4 154 18 168 176 161 52.0 4e-40 MKKEYFIAASADVYGNVQLAKDSNIWFQSVLRGDSNTITIGEGSNIQDGTIIHVDEDAPT IVGKYVTVGHQCMLHGCKIGDGALIGMGSTILNNAIIGENSLIGAGSLVTEGKIIPPNVL AFGRPAKVIRPLTAAEIASNHTNALHYIQRAEEFRQQKYPKLT >gi|308151774|gb|GL476248.1| GENE 25 22899 - 24668 217 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 347 566 132 351 398 88 29 9e-17 MKHAFSSMKRIGRYIKPYRVTFYLVILFTILTVAFNAALPYLTGLPTTEISRNIAAGESI NFDYVIQCLIWILVVGTGYCVAQFLSGFLMTNVVQQSMRDLRRDIEEKINRLPVSYFDKN QQGNILSRVTNDVDAVSNAMQQSFINIVSAVLGIVMAVVMMFLINPLMAIFSVIMIPLSL IISRTIVKISQKYFQGMQNSLGDLNGYVQENMTGFSVLKLYGREKETLEGFKQVNHRLNG FGFKASFISGLMLPLVQMTAYGTYIGVAVLGSYYVVAGVIVVGQLQAFIQYIWQISQPMG NITQLSAALQSASASTMRIFEILDEPEEELNEQDVPLPEPILGSVEFENVSFSYDPEKPL IRNLNFKVDAGQMVAIVGPTGAGKTTLINLLMRFYDVTEGAIKIDGIDTKKMNRSDVRSV FGMVLQDAWLYKGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYEMEINSEGD NVSLGQKQLLTIARAVISDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRL STIREADLILVMKQGEIIEKGTHHELLEQGGFYEKLYNSQFAEEGDYEE >gi|308151774|gb|GL476248.1| GENE 26 24665 - 26392 243 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 333 557 132 354 398 98 30 9e-20 MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPRDMDYIYQQGIWMV VITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDA YQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPL SKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAVAQ PGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYPRAA VSASRIQEALDMEPAIREEEGVTETATKGYLEFKNVTFAYPGHAESPVIRNVSFKASPGE TVAFIGSTGSGKSTLIQLIPRFYDVSEGEILIDGVNVKDYQLSALRNKIGYIPQKALLFT GTIADNLRYGKEDATLEEMERAIDIAQATEFVSQKPQGYDEPLSEGGTNFSGGQKQRLAI ARAIIRNPEIYIFDDSFSALDYQTDANLRARLKKETTESTVLIVAQRVGTIMHADRIVVL NEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA >gi|308151774|gb|GL476248.1| GENE 27 26621 - 27007 376 128 aa, chain + ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 92 2 91 127 57 34.0 9e-09 MKKLFFIFLGSCTFALGTLGIFLPLLPTTGFYLLTAFFWMRSSDKLYNKFLASSYYQKYI QEAFFEKKITRKGKWKLFISMFLLFAIPCLIVRNTLMTTTLAIVYLAHVIGLSWYWRPKK KALELDQE >gi|308151774|gb|GL476248.1| GENE 28 27313 - 27525 251 70 aa, chain + ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 65 53.0 2e-11 MIYKVYYQETKIRNPKREDTKSLYMEADSDVIVRQLVEENTPYNIEYVQLLDEKHLAYEQ EHADFTLTEF >gi|308151774|gb|GL476248.1| GENE 29 27527 - 29212 1962 561 aa, chain + ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 555 4 556 560 863 74.0 0 MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF EQTERHPMILPMIMTATVSDQ >gi|308151774|gb|GL476248.1| GENE 30 29318 - 29518 390 66 aa, chain - ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 97 84.0 4e-21 MEQGTVKWFNAEKGFGFISREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDRGPQA VNVEKN >gi|308151774|gb|GL476248.1| GENE 31 29672 - 30370 627 232 aa, chain - ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 229 8 231 231 230 47.0 2e-60 MQVSDLFIREMPSDCLPRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFK QLSYLQQATLNELMAIKGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQ EMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIFREAVKYSSARILLAHNH PSGNPTPSPQDIQFTKRMEECGEMMGIQLLDHIIVGDSGYISLREENFFASE >gi|308151774|gb|GL476248.1| GENE 32 30426 - 31082 707 218 aa, chain - ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 2 218 5 218 221 150 36.0 1e-36 MKKFDGVIFDMDGLLFDTELIYYTSTQKVADAMGLPYSKEVYLDYVGISDEEVQENYRRI YASYGHDTVEEFIRRSYDDTLQEFRSGNVPLKPGVVEFLDFLDDQKIPRLVASSNVRPAI EMLLSHAGIQDRFVGIVSAEDVKRAKPDPEIFQKARQLLGTEAPKTLIFEDSFHGVSAAH SAGIPVIMVPDLLQPTEVIQEKTLHVLESLHQAPHYLK >gi|308151774|gb|GL476248.1| GENE 33 31069 - 32391 1475 440 aa, chain - ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 3 430 1 423 427 446 53.0 1e-125 MQLTIEEAIEWIHSRLPFGSRPGLDRINALLEKIDHPENKVPTIHIAGTNGKGSTVTYLR CLLEEMGLKVGTFTSPYIESFNERIAINGQPISDEQLITYVEKYQPIIKELDQITEVAGI TEFETLTGMALDYFVNEQVDIAVVEVGLGGLLDSTNVVKPLLTGITTIGKDHTEILGETI AEIAYQKAGIIKEKVPVVTGNICADALAVIEKVAQEKQSPIFRFGKEYQVEYLHPDTQWG EVFNFYGEMGKLTKIKVPLLGRHQVENAAVAIQLFDKYCQLQHLPFKERDITQGLAKAQW PARMERLSDEPLIVLDGAHNDHAVKRLVENLRKEFPQHTIHILFSALATKDVDEMIQDLK QVPNAHLYLTSFDYPKAIALTEMEKYEDDLTEIVSLWQFGLGEILEKMSTDDLLLVTGSL YFVSQVRELLLTIGGNDEEI >gi|308151774|gb|GL476248.1| GENE 34 32640 - 35204 2433 854 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 12 851 14 850 850 207 26.0 5e-53 MKNKSKLLWLGSFFLPFLLLLLVWMTLQLAPFGDNNLLVSDLGTQYMPFLSFLKRSFHEG ITTFYSFSNEIGESIVPLAAYYLLSPFNVLAFFFPYEQLPIAILWIITLKLALMGTTMFS YLKYTYQKVDGTTLLFSTSYSFCGFVTVYSQNFMWLDALILFPLILLGLQRLWDQRKWGL YSITLFLAIVTNYYMGYMICLFAVLYSIYWFFKKNTQAHAIRQFFKQSPLFILVSFLTGT ATSFLLLPAAEGMLYTKKADFDVSTFFLTPKFNTSFFSQLGLGSINYELRLDHLPTVFAG LFVTLLCVAYFQTKQIALKERIASAILLFILFLSFWLEAFNTVWHMFQSPAGFPYRNVFI FSFLLIVFAYEVWLKKVTISWSAPIIFSLLLVIGYGSLYYGPQKNLLISINYLWLSLLFI WLIFFCLRLAHKKALRNYVVVALFLLVSTELTTNFWISFKHMPFGSQATFAQDYRKHSQL IDEKMASAPELYRMKQVIPSKETGFREINNGYNNPLLYGYAGVSSYTSTLTATTQDTLSA LGLYRKNDRRIAYVDNSQLTNLLLNVKYDFLPIEKPTSEKLLKTVGSTKIMENDEAIGMG FLAPTALTKLKLAKNNPLDAQEELLQTLVPTDKPYFKTASLINEPHHTNETIEATFKVNS TGDLHLYIPNLKWKKVTKLKVNQQVISTPIYIATNQLFNLGHFEKGTTVTLSLTAEQVVD LTNWQLQTLDQTAFNRAVDKLRQQALHVNATKKGHLNGALNVPGNDTQLLYTSIPYDQDW QVKSTLQKEPLKTQRILGGFLAVEVPAGKQQLTFAYHPRMIYLGTAVSGTILLGTAGYLG FKKYRRKRQEATHD >gi|308151774|gb|GL476248.1| GENE 35 35197 - 35796 406 199 aa, chain + ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 199 13 204 205 126 36.0 3e-29 MTNQKKFLNGLIRWLPLVGLVLFFGLILWGYSRGIFHSVASLQAFIKQFGNYAVLCFILL QIVQVIIPILPGGISSVAGMLMFGNLQGLLYSYLGLIIGEFIGFLLVRYYGRSFVKIILS PNKYKKFEEILDKNEHNVKKLLIFTMLVPFAPDDIVCLVAGITDISLKEFMKIVLLLKFW SVATYSYLMLYLFQLFGKL >gi|308151774|gb|GL476248.1| GENE 36 35842 - 38484 3362 880 aa, chain - ## HITS:1 COG:SPy1568 KEGG:ns NR:ns ## COG: SPy1568 COG0525 # Protein_GI_number: 15675460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 7 880 4 880 882 1316 72.0 0 MSEEKNLPTKYQPTEIEAGRYQKWLDQDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMIIRQKRMQGFDTLWLPGMDHAGIATQAKVEEKLAQQGISRYDLGREKFVDQVW EWKEEYASHIREQWAKMGLSLDYSRERFTLDEGLSEAVRKVFVSLYEKDLIYRGEYIINW DPKAKTALSDIEVIHKDIEGAFYHMSYPLSDGSGVVEIATTRPETMLGDTAIAVHPEDER YQELIGKTVVLPLVDKEIPIIADDYVDMEFGTGVVKITPAHDPNDFEVGNRHDLPRVNVM NEDGTMNELAGKYEGMDRFAARKAIVSDLKELGRLIKIETMNHSVGHSERTGVVVEPRLS TQWFVKMGPLAEKAIENQETEDAVEFYPPRFNQTFLRWMENVHDWVISRQLWWGHQIPAW YHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQRYFPTST LVTGYDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNASRFVIMNVEGMTAADIDFS GEKTVADRWILTRLNETVARVTELFDRFEFGEAGRQLYNFIWDDFCDWYIEMSKEILYGD NEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLVVAEYPVVHEEFNDE AAARGMEVLKEVIRSVRNIRAEVNTPLSKPITLLIKTNDTEVEEFLTANTSYLERFCNPE ELVISREIEAPELAMSAVLTGAELFLPLAGLINIEEEIARLEKELDKWTKEVKRVQGKLS NERFVSNAPDEVVEAERAKEKDYLEKQEAVKERIAQLRSI >gi|308151774|gb|GL476248.1| GENE 37 38877 - 39365 698 162 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 3 162 4 165 167 146 48.0 2e-35 MNVTRKGHVLELTGEQPKVGTKAPVFSLKNLNNQEINLADYKGKTVLISVVPDIDTRVCS LQTKRFNQEAAKLDGVQIITISNNTVEEQANWCAAEGVEMEMLHDTEDSFGAAYGLYIPE MGRLARAIFVIDPEGTLVYEEIVSEVSSEPDYQQALEAAKKV >gi|308151774|gb|GL476248.1| GENE 38 39429 - 40076 569 215 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 4 207 7 210 215 218 52.0 5e-57 MEKKMPKATAKRLPVYLRYLKMLGDSGVKRIKSREFSEMIQIPSATIRRDFSHVGELGRS GYGYDVPYLIEVFSNILNTQEEKRIALIGCGNLGKALLKNNFRRNENLNIVCAFDNDLAL VGTTINGLLVHDMSELEAFVRQEGVTVAISTVPSHHAQKAIDKIVQAGVTAILNFAPDRV SVPANVSVQYIDLTTELQTLIYFNETFSLANSPKQ >gi|308151774|gb|GL476248.1| GENE 39 40206 - 41420 1570 404 aa, chain - ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 404 1 404 404 537 66.0 1e-152 MKYTEIMVRYGELSTKGKNRKTFIMQLAQNVKRALADFPALKIHADRDRMHILLNGEDSE EVIPKLSKVFGIQNFSPSIRIEKEMPAIRAMVQEVVREVYTPGKTFKITAKRSDHSFELD SNGLNQELGGAVIEAIPEIQVQMKKPDINLRIEIRKDAAYLSYETIRGAGGLPVGTSGRG MLMLSGGIDSPVAGYLAMKRGVEVEAVHFASPPYTSEQALQKAKDLAEKLVPYVGTIQFI EVPFTEIQEEIKRVVPQGYLMTITRRLMLRLTDAIREMRKGLVIINGESLGQVASQTLQS MVAINEVTSTPIIRPVVSMDKTEIIEIAEKIDTFELAIQPFEDCCTIFAPPQPKTRPRLD KAQDYEARLDLEGLMARALEGLKITEISAETAKDKQEDEFADFL >gi|308151774|gb|GL476248.1| GENE 40 41580 - 42893 1655 437 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 5 435 1 433 434 416 59.0 1e-116 MKEKISSYFELEQLNTNMKREMLAGFTTFISMAYILFVNPTVLGASGMDEGAVFTATALA SALGCILMGVLAKYPIATAPALGINAFFAYSVSVGMGIPWQTTLAGVFVASLIFILITIF KLRELIIDAIPADLKFAISGGIGLFIAFLGLSQGGLIVANDATLVGLGPLNVGSTWVTIV GLVVTAILLVRRVPGGIFIGMAISTIVGLATGVIPMPDKIISSAPSLEPTFLVALGHVKD INTIQMWVVVLTFLLVTFFDTAGTLVGLANQAGFMKDNKMPRVGKALAADSTAMLAGSLL GTSPVGAYVESSAGIAVGGRSGITAITTGILFIFSLLFSPLLAVVTSQVTAPALIIVGVL MAQSLSKIKWNEMEIAIPSFLILLGMPLTYSISDGIALGFIFYPITMIAAKRGKEVSPIM YGLFFVFVGFMWILNAQ >gi|308151774|gb|GL476248.1| GENE 41 43075 - 43812 926 245 aa, chain - ## HITS:1 COG:lin0452 KEGG:ns NR:ns ## COG: lin0452 COG4221 # Protein_GI_number: 16799528 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Listeria innocua # 3 243 2 246 248 209 48.0 5e-54 MKSLSEKVIVIMGASSGIGEATARLLARKGAKLVIAARRQERLIAIKKELPEATILVQQA DVTKEEEVQRVIKLTMEKYGRIDVLFNNAGVMPTAPLIEAPKGEWRQMLDINIMGVLNGI AAVLPIMVEQKSGQIIATDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRENNIKSTI ISPGAVQTELYQTISNRVVAETLHLEQLSWGLKAEDIAQAVVFAIDTPDRMSISEMVVRP TTQTI >gi|308151774|gb|GL476248.1| GENE 42 43812 - 44393 722 193 aa, chain - ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 189 1 189 189 194 53.0 1e-49 MLTKNLQELIATGSIDKDEPLFQLTHQIQEENSRYLIELNQQAYTHNEVRNLLATIIQDK IDETVTILLPFYTDFGRNIHFGKNIFINRAAMFVDLGGIIIEDNVLIGPRVNLLSVNHPE LPMKRRGVLLAPITIKKFAWLGAGVTVLPGITIGENAIVAANATVTKDVPANAIVAGTPA KIIRWIQEDKEEI >gi|308151774|gb|GL476248.1| GENE 43 44501 - 45448 846 315 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 288 1 287 291 312 54.0 5e-85 MELRVIHYFLAVVQEKTISGAAKQLHVSQPTLSKQLKELEEELGVTLFIRGNRQIQLTPE GEYLAKQGQDILSLANKTVTNLSQNEFINGEITIGGGETKAMSFLANALQQITSQHSADI HLHLYSGNADDVIERLDKGLLDFGLIIEPAPKQKYSYLTLPVVDTWGLITVKDHPLATKN VITAADLKEEPLFISRQAQVPSQLSDWLEASLDQFRIVGTYNLLYNASLMVEAGLGSALS IDGILETKQTNLRFIPLYPALTAKISLIWRKNTVLSTAAALFLEQIKKVFNALNNRSLNT FLNHHCDRSCCQNQN >gi|308151774|gb|GL476248.1| GENE 44 45404 - 46291 1177 295 aa, chain - ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 328 67.0 6e-90 MNATALLIGLGPLLGWGLFPTIASKIGGRPVNQILGTSLGTLIFAAIFSMINGLAFPAGM DLFFSILSGVGWACAQIITFKCFTMIGSSRAMPVTTAFQLLGASLWGVFFLGNWPGATAK LLGAFALVLIMIGAKMTVWSETESAESAGIMKKAVLLLAVGEIGYWAYSAAPQATAIDGM HAFLPQAIGMVIVAVIYSAVVTIKGGEISPFIEAVSYKQIFSGFFFAFAALTYLISAQPD MNGLATGFILSQTSVVLATLTGIWFLGQKKTAKEMTVTIIGLVLILAAATITVMI >gi|308151774|gb|GL476248.1| GENE 45 46312 - 46707 529 131 aa, chain - ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 119 55.0 1e-27 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPRTTEKIDLAVTNGVPSFMEVLNNVLE ELAVQRIYLAEEIKTENPDMLAAIETRLPETPISFIPHTEMKQELNNCHAFIRTGEMTPY ANILLESNVVF >gi|308151774|gb|GL476248.1| GENE 46 46723 - 47634 1117 303 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 2 300 3 301 304 244 48.0 1e-64 MNAVTIIGSINLDTTLRVKEMPKPGETIHAIEHFTAGGGKGANQAVAAKRSGAETYFIGA VGNDGAGAMMTDLMSQDEINLTGVTTLEKTATGQAFIMVDNAGENSIMIYAGANNAFTPK QVQEHQEIIEKSDFVIAQFESAIDSTIAAFKIAKKAGVKTILNPAPALEQVPEELLNVTD IIVPNETETEILTGIKITDEASMRKAAEALHQLGIEAVIITVGSKGAFYDVNGRSGIVPA FTVKAVDTTAAGDTFIGALSSILEKDFSNLEEAIRYGNKASSLTVQRFGAQPSIPYQHEL ADK >gi|308151774|gb|GL476248.1| GENE 47 47732 - 48727 991 331 aa, chain - ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 328 2 327 332 265 43.0 9e-71 MTNKKVTIKDVANDSGVSITTVSQILNGNGARFSGKTVEKVLAAKERLNYQPDYFAQRMV MKKSKTIGVIVPDITNPFFAQLIRGIESVLYKENFILMLCNADQDVTREHEYLTELIRRS VDGFVIASSEISNQTINETLRAKKIPFIVLDQKKAEGFSDAVLTDDYRGGQLAAKHLQEQ RHEQVVVVMPPHAPVNIQQRLKGFCSVYTEKVQLIETELSKTGGYQAVPEILKTESTGIF AINDEIAFGLYRGLTEAGKKIPEDYSIIGYDNVDMCEYVSPPLTTIAQPVFQLGQTTATL LLERIHQPAKDWEEQTLPVQLIERFSTAPLK >gi|308151774|gb|GL476248.1| GENE 48 48939 - 49913 637 324 aa, chain + ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 92 322 65 295 317 87 27.0 4e-17 MKKKSIGLLLASAYLFHARSRQKSLKACLFEDSLRLSQIARLERNPKVTKAFYYWQRSLN EQVTLPKHLRHLFPLQEMTQIPTMYRMSNSVIAPTKKAVLYLHGGGFTLNLAYSQLDFSY KLIEDLSFATDYFIPVYPLAPNKSFADIYNHCYAAYQEILQHYDPEDVILLGDSAGGTLV LNVLQNLAIDFPERLPKAAVLISPWLDGHLDIPVAKSYQKKDKMIGMNYLQLIAQEIDDT ANHSTLSLNCLSFDYQKFPPLFFVGGTHEVFCPSYHQFLKQLGPRPQDTCRLVPGMQHVF AMKQYLPEGRQARKQIAQFIQEQW >gi|308151774|gb|GL476248.1| GENE 49 49978 - 51345 1753 455 aa, chain - ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 454 1 448 448 419 55.0 1e-117 METLLNLFVSIVSQPAILVSLIALLGLVLQKKKFSDVVQGTLKTFVGFLVLIGGAGLLAN SLTPFAEMFQTALNTQGVVPSNEAVVAIALQQYGTPTALIMLVGMVVNILLARFTRFKYI FLTGQAMMYVSCLTAVILVGAGFSVSLPMILLGGLFEGTLLTVTPALCQPFMKQITGNDK VAMGHTGNIGYAASGFIGKVFGNKEKSTEDIKIPKSFGFLRDSTISIMILMSIVYVILAL LAGTGYVEHELSNGENAIIFSLIQVGTFTAGFVVVLQGVRMVLGEIVPAFQGIAKKLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGTISMLAMVGLNTTVIIPGVVGHFFCGAAAGV FGNSTGGRRGAILGAAFNGLLISWLPLFILPVLGDLQLASSTFADTDYLIPGLFLGKLGE AGPSLLVGGIIAFVVVVLLASAVLTMREKKVAEEN >gi|308151774|gb|GL476248.1| GENE 50 51360 - 51659 189 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 96 2 93 94 77 40 2e-13 MKIFTVCQSGLGTSFMVQMNIQQILEEVGVDTDNFQIDHTDVGSASGDMADYFFVEKTLQ DALGSIPDEKIIPLNAIIDYDETKEKVLKVLDDNGIAHQ >gi|308151774|gb|GL476248.1| GENE 51 51661 - 53670 1730 669 aa, chain - ## HITS:1 COG:SPy1952_1 KEGG:ns NR:ns ## COG: SPy1952_1 COG3711 # Protein_GI_number: 15675752 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pyogenes M1 GAS # 8 491 12 500 532 185 26.0 3e-46 MNYKISYLLDEYAGQKIALSLAQQITNLSQRELVTQLSTIGGEVQQNTVSIPNLSANEWG KQLFQQHQVIYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLAT ENIALSYERKRGFYLEGDEFRIRRFGKNWLARLLQQKSGTFALFCWLSQHQMSQYAKMRD GIQLAVQEAQLQLVPSRLDEISYFLAFSQKRLGKYKTVVWPENQLIQSLRAYPVSRRILS DLVGPVANVETESLFLTICLMTALQGELRDTKLEFLLDISGEIIRKMELLAVVQFEQPRE LLMNVYYHLVPAYFRINYGFYLPNVLIKDIRQSYRSLYHLCEQALAPLEKLTKRSIPSEE IGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSSLILQSELRRLFPMIEFKETNAVR EIENVSEKSYDIIFSTVPIETAKKVYLTKPIMSSLEKNQLMHQVQSDWLLPGISMPDVKD ILDALKPYISLKKGVTEAQLYRVLHRKMNKILEKEEDLRPMLSELLTTETVQVLPEVADW RAGITEAAKPLLKNGSITEKYIDAMIQKVESFGPFIHICPDVALPHARPEDGVNQLGMSL LKIQKSVDLLEDPKHEIHLFICLAASDNETHLRALSSLTKILSKKESLHRLVAAETVPEI LSIIQEGEK >gi|308151774|gb|GL476248.1| GENE 52 53836 - 54060 286 74 aa, chain - ## HITS:1 COG:no KEGG:EF2967 NR:ns ## KEGG: EF2967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 90 100.0 2e-17 MEITMWIWICAGLAVLCFALFLLFLVNSMNFVHLAKPKQSLVKQSMFSWLLLVMCGGWVA VAILLNIALQTQLT >gi|308151774|gb|GL476248.1| GENE 53 54107 - 54505 236 132 aa, chain - ## HITS:1 COG:no KEGG:EF2968 NR:ns ## KEGG: EF2968 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 11 132 1 122 122 206 97.0 3e-52 MTMKSKGSLLVMLGILLTVGIASLIVSSESFAEEVGQTNIGVTFYGGKEPLKTEGVIKPT EQPVTDKDKKTSQQQDKVSRKTTAKTNPTNAQTSLPRTGERNSTWLYSLGIACLLVVLTS FYYLNKKRKKEK >gi|308151774|gb|GL476248.1| GENE 54 54489 - 55622 1248 377 aa, chain - ## HITS:1 COG:no KEGG:EF2969 NR:ns ## KEGG: EF2969 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 377 1 377 377 700 99.0 0 MKTMRWLIVTVFICVMALSIPSAVQAEEADDNMNTKFTVKPNIPENQAKNTQSYYDLIVK PGQKQEVELSLINKTDEELTIDLNLANAVTNDNGLIVYNDFEKKPDSSLKVPLTTLIKLP EEHVKVPAKKTVTAKMTVEIPANGFQGLVLGGVYASLAEDEKEEKGKSTGLTSRYGFNVA IALRMSEDTPMYLAETLQLVKLVPTIALGNKSVQAVIQNPTSAIFPEVRLEGKVTKKGET KEYAKRILPSVRFAPNSTMNFHLDFGKEDVRPGTYIFEGKAVLKEDEQQVWPFKQEFTIS SQEAKKLNKEAVVKLVLPTWWNQAFYGLLAATIVSLILAIWRFTQQKATLKQQAYLQQEK QAALKNRQGARYDDNEK >gi|308151774|gb|GL476248.1| GENE 55 55710 - 56399 1102 229 aa, chain - ## HITS:1 COG:no KEGG:EF2970 NR:ns ## KEGG: EF2970 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 229 291 100.0 1e-77 MKKKTLVTLFAGTAILGASIAPAAAHATTTGTTPANVEMTSGSLPGGTGDGDDGSTQEPE PGSNTNFDLLYVPTEFKFASTEVSSDLSAISLDATGTQTKRYAVGDVRGTQAGWSVTAGV AEMKNGTATLEGSITFAQTGAVAKYDETAKTYSRDVAAFAADPGSPEFAGTTIPVGGAAV SIATAAVGKGQGTWDSELSNVKLNITTPSSQITNGAYTGNVTWTLVAAP Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:37:06 2011 Seq name: gi|308151773|gb|GL476249.1| Enterococcus faecalis TX4000 genomic scaffold Scfld10, whole genome shotgun sequence Length of sequence - 14310 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 11, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 10 - 69 1.6 1 1 Op 1 . + CDS 95 - 433 354 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 438 - 497 1.6 2 1 Op 2 . + CDS 532 - 636 139 ## gi|257880532|ref|ZP_05660185.1| recombinase 3 2 Op 1 1/0.000 - CDS 681 - 1322 577 ## COG0477 Permeases of the major facilitator superfamily 4 2 Op 2 . - CDS 1362 - 2891 1203 ## COG2132 Putative multicopper oxidases - Prom 3013 - 3072 5.2 + Prom 2894 - 2953 6.8 5 3 Tu 1 . + CDS 3013 - 3159 87 ## COG2963 Transposase and inactivated derivatives + Term 3214 - 3266 6.0 - Term 3209 - 3244 0.2 6 4 Op 1 . - CDS 3425 - 3853 355 ## COG3316 Transposase and inactivated derivatives 7 4 Op 2 . - CDS 3887 - 4324 154 ## COG2826 Transposase and inactivated derivatives, IS30 family - Prom 4355 - 4414 5.8 + Prom 4401 - 4460 7.5 8 5 Tu 1 . + CDS 4510 - 6189 1468 ## COG0277 FAD/FMN-containing dehydrogenases + Term 6309 - 6365 13.5 9 6 Op 1 23/0.000 - CDS 6292 - 7110 303 ## COG2801 Transposase and inactivated derivatives 10 6 Op 2 . - CDS 7107 - 7664 342 ## COG2963 Transposase and inactivated derivatives 11 7 Tu 1 . - CDS 8047 - 9396 395 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 9425 - 9484 3.4 12 8 Op 1 . - CDS 9534 - 10157 348 ## LACR_C36 amidase 13 8 Op 2 . - CDS 10184 - 10348 93 ## gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein 14 8 Op 3 . - CDS 10422 - 10997 530 ## COG1309 Transcriptional regulator - Prom 11074 - 11133 5.5 + Prom 11614 - 11673 5.8 15 9 Tu 1 . + CDS 11852 - 12286 297 ## COG3464 Transposase and inactivated derivatives - Term 12700 - 12737 6.1 16 10 Tu 1 . - CDS 12756 - 13034 236 ## gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 - Prom 13127 - 13186 7.2 + Prom 13096 - 13155 7.8 17 11 Tu 1 . + CDS 13216 - 14157 966 ## COG2267 Lysophospholipase + Term 14200 - 14244 11.7 Predicted protein(s) >gi|308151773|gb|GL476249.1| GENE 1 95 - 433 354 112 aa, chain + ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 16 111 2 98 165 77 45.0 4e-15 MMEGLNIDKLFQEKASGKDTERPEFQKLLNYIREGDCVIVTSLDRLGRDYEDIKNTVAFM KQKKVALKILDAQFLDFNTGNELLDTAMFDMFLSLLSYIAQNEREKIRERQR >gi|308151773|gb|GL476249.1| GENE 2 532 - 636 139 34 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257880532|ref|ZP_05660185.1| ## NR: gi|257880532|ref|ZP_05660185.1| recombinase [Enterococcus faecium 1,230,933] recombinase [Enterococcus faecium 1,230,933] # 1 34 154 187 187 64 97.0 2e-09 MVDMLKQGIPVAEIAKENGISRPTIYKIKKANDL >gi|308151773|gb|GL476249.1| GENE 3 681 - 1322 577 213 aa, chain - ## HITS:1 COG:SA2142 KEGG:ns NR:ns ## COG: SA2142 COG0477 # Protein_GI_number: 15927932 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 9 184 138 313 643 118 34.0 6e-27 MHSPTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADIVAWLTTGFMLVMT LMIPVSPWLLHNVTFQRLFQAIELIFAIGTGLCIWAPSFTVLMIGRLLEAIAVGIIFPSF QTVLLTITPHSERGRVMGTAGLVMGSALAVGPIISGVLLTWFPWQALFLFFLVVSLLVLA VSTVTIASVMPLQPTQLDWVSFLLSASFGVHGT >gi|308151773|gb|GL476249.1| GENE 4 1362 - 2891 1203 509 aa, chain - ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 32 465 44 490 513 255 37.0 1e-67 MKNYTDYFFDEPAFDLHDGGYVPLEVSDAPEKPLNVPPLLKPDKETATDVYYTVTAEAGE TQLLPGAKTKTWGYNTSLLGQTIVYRRGQHTHVTLKNTLPELTTFHWHGANVSGPYVDGG CHAPVYPGKSKHIDFTLEQPATTLWLHAHPCPSTAEQVWHGLAAMVIVKDDHEASLPLPR NYGVDDIPVILQDRRFHENNQWDYRADYDPDGVAGPTAMINGTINPYFDVTTQKVRLRFL DGANRREWRLHFSDDLPFTQIGGDGSLLPEPVKFTHLMLTCAERAEVIVDFGQYHEGDEV TLYTDDVPLLKFRIHAFKPDQTTLPDKLFDVKAPVVDPALPVPHVVMQGMDEGVAIDGKK FAMQRIDATQPIGKAQYWDVTNSNDAPGMVHPFHVHGTQFLVLSRNGHAPYPNEYGFKDT VGVNPGETVRLLVGFDLPGVYMYHCHIIEHEDGGMMAQIETFDPAKPKQEYKLMDMDTLM MALAKERGVKPSEIWMGGMQSYEKMGMKM >gi|308151773|gb|GL476249.1| GENE 5 3013 - 3159 87 48 aa, chain + ## HITS:1 COG:SPy0565_1 KEGG:ns NR:ns ## COG: SPy0565_1 COG2963 # Protein_GI_number: 15674656 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 37 1 37 94 58 83.0 3e-09 MSGFKRYDEDFKQSLVNLYQTGKTQTELCKDYGVSGSVAKSETQKHYL >gi|308151773|gb|GL476249.1| GENE 6 3425 - 3853 355 142 aa, chain - ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 137 1 137 226 251 93.0 4e-67 MNHFKGKQFQQDVIIVAVGYYLSYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKILYH LWKKKNKQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRL HKQFGQPRVIVTDKAPSYRICI >gi|308151773|gb|GL476249.1| GENE 7 3887 - 4324 154 145 aa, chain - ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 2 136 4 143 314 60 32.0 7e-10 MSSITYSERIKIETFCELGLSNIQMSNRLKRSPATISYELARCEPYQAEVAQTDAEYKRS RCGRKTKLNDKLRQIILNHLRLSWSPEMIAHEFKLATKSIYNWLNQRKIEFSLNDLPEHG VRQRRNLDQRSKGSVAKFFNFLYLL >gi|308151773|gb|GL476249.1| GENE 8 4510 - 6189 1468 559 aa, chain + ## HITS:1 COG:STM2167 KEGG:ns NR:ns ## COG: STM2167 COG0277 # Protein_GI_number: 16765497 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Salmonella typhimurium LT2 # 3 558 12 569 576 619 52.0 1e-177 MDLVEELVNVVGKKNVITNKAKSLRFRKGYRSGKGDAVAVVFPTTLMAMWRVLNVLHDNN IIIIMQAANTSLTEGSVPAPGYDRSAVVVNGMKIKDLQLINNGEQVLAFPGTTLFHLENE LRPLKREPHSVIGSSNLGASVIGGINNNSGGALIRRGPAYTELSLYVWIDEHDEMHLVNH LGIDLGKTPEEIITNLQNRNFDLNQVPATEHHGSMFHHEQVVRDVESDKPIRYNANPKEL YEVSGSSGHVAALAVRLDTFPMDKKTQMFYIGTNNPDELEDIRRHIMTTFKELPVSGEYM HKNAYKLAKKYGKDSLIVIEKIGTGHLPQMFALKAWGERFLKHIPFFKPYFPDRLLQTLS NLFPNQMPKRLDDYYEKYDHYLQLKMAGNGIEEAREYLKSYFDKASGDYFEADANETSKA ETHRYVTAGVAIRYQELKQDSIDILPLDIALASNDYKWFEHLPKEIEDKIEHKIYYGHLL DHVMHQDYILKPGVDAHELKKEMLKILDERHAVYPAEHNVGHLYLAAPALIKHYKKNDPT NSFNPGVGKQTMSKYWGEY >gi|308151773|gb|GL476249.1| GENE 9 6292 - 7110 303 272 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 272 1 272 272 509 98.0 1e-144 MKVTGFPKATYYYWVNCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHK KVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKY YEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQLIDIALNQALAVTSDCPYRRTFHSDQ GWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELKQV IVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN >gi|308151773|gb|GL476249.1| GENE 10 7107 - 7664 342 185 aa, chain - ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 185 1 185 185 320 99.0 7e-88 MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKN YSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVNHFKIYGEVPISKKRGRRKKL ESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPS NSKKS >gi|308151773|gb|GL476249.1| GENE 11 8047 - 9396 395 449 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 444 1 450 458 156 26 7e-38 MKKIDVKNIVVGFGKGGKTLAKFLAGKGESVVVIEQSPRMYGGTCINIGCIPSKFLIVNG EKGLKFTEAAEKKAMLTGNLNLKNYHMIADESTAEVIDGKAKFVSDHEIEVMDAEGEVIA QLIGERIFINTGATPVLPPIPGLVDSRNVVTSTELMDLKQLPEHLTIIGSGYIGLEFASM FASYGSKVTVLDIFDNFLPRDDEDISKLVRSDLESRGIIFKLGVKIVAITDNSVEIINKE GKKVSILSDKILVATGRKPNTAGLGLENTNIQLGQRGEIVVNDKLETTVQNVWALGDVHG GLQFTYTSLDDFRIVSNNLYGDGKRSLSDRKNVPTSVFITPALSKVGLNEKDAKAAGIDY RLFKLAATAIPKSAVLNQSKGLLKALVDPETDKILGITIYAEESYETINLISLAIEVGLP YTLLRDKIYTHPTMTEALNDLFAAKNEIK >gi|308151773|gb|GL476249.1| GENE 12 9534 - 10157 348 207 aa, chain - ## HITS:1 COG:no KEGG:LACR_C36 NR:ns ## KEGG: LACR_C36 # Name: not_defined # Def: amidase # Organism: L.lactis_SK11 # Pathway: not_defined # 1 207 1 207 207 416 100.0 1e-115 MFNNKNTAFVVTDPQVEFLKPKGAGYGLTKDILRKYHTTENLTELFKHAKAKGYKIFISP HYFYDHDQNWKFGGQGEQMMLNNKMFHREHQYQETVKGSGADFVEELKPYLDENTIITSP HKIFGPESNDLALQLRKNGIDTVILAGMNANLCVDSHLRELVESGFHVHVAADATGAPGQ EAYDAAITNFGFVADRTMSTAKVLEEL >gi|308151773|gb|GL476249.1| GENE 13 10184 - 10348 93 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256854634|ref|ZP_05559998.1| ## NR: gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis T8] # 1 54 3 56 56 90 100.0 4e-17 MSAVESKEKVKILQADAIRREYPIAIVQKRWQSCQTFIDVLGKGILKQLITELS >gi|308151773|gb|GL476249.1| GENE 14 10422 - 10997 530 191 aa, chain - ## HITS:1 COG:mlr8177 KEGG:ns NR:ns ## COG: mlr8177 COG1309 # Protein_GI_number: 13476759 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 5 184 16 198 225 67 24.0 1e-11 MRNTKEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEASLAVIDNHVK IWQKHLLNGILSRDESPLANLKEMLDWIYSDHAQKKIYYGCPVGNLVIELSALDEDFRKP LEQLFSDLQKKIAENLSALTGLLVKQNLPAAHAIIAQIQGSLLLLKVTQDLNVLESNFDL LKTSFEKVGEK >gi|308151773|gb|GL476249.1| GENE 15 11852 - 12286 297 144 aa, chain + ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 120 178 297 439 115 49.0 2e-26 MSFIFMNAVNHEVIDIVENRQQHNLSDYFMRYSLNARLRVKTVTMDMYSPYIGLIKACFP KADIIIDRFHIVQHLNRALNHVRIQRMNSLRYTRPRDYRKLKKQWKLVLKNEADLNFHDF FTHRLYTGMVSEYVMANYLVELSP >gi|308151773|gb|GL476249.1| GENE 16 12756 - 13034 236 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546320|ref|ZP_04435045.1| ## NR: gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] putative lipoprotein [Enterococcus faecalis 62] # 1 92 22 113 113 132 98.0 6e-30 MNEEKNQYKIKMIFISLLTVAVLAGCSETAEETPQTNSPDETTAVTKSTSDTSDSETATE EDLSESEAESPNEKYKELTIQDYFNLEGLFVK >gi|308151773|gb|GL476249.1| GENE 17 13216 - 14157 966 313 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 21 288 19 284 306 146 34.0 6e-35 MAIHEVEFKSFNEIETVKGWIYTPIREPIGVVQIVHGYGEHSRRYLHMILTLNEAGFVVA ADDHVGHGKTAYDSDNWSNWGDKGYMTMAEDEQKLRELIKEDYGDLPYFMFGHSMGSMIA RLYATKYGEELDGLILCGTSEIFPEMENIVSELKAEIDAGNGEQVDPDYQNRMFEWMTER IENPNTPNDWISKDPDIVADHANDPFNNFTPVPNIQSLYQFAQMIQQILGTEWSEKVPTD IPIYNIAGDEDPVGRYGEGVHAVSNWLLETGHQVKTKLYSGYRHEIHNHREIRDEVVAGI IDFITEHARVKAN Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:37:30 2011 Seq name: gi|308151772|gb|GL476250.1| Enterococcus faecalis TX4000 genomic scaffold Scfld12, whole genome shotgun sequence Length of sequence - 11896 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 44 - 1606 1587 ## COG2508 Regulator of polyketide synthase expression 2 1 Op 2 13/0.000 - CDS 1630 - 2877 1500 ## COG0826 Collagenase and related proteases 3 1 Op 3 . - CDS 2905 - 3825 1220 ## COG0826 Collagenase and related proteases - Prom 3868 - 3927 3.3 - Term 3921 - 3969 6.2 4 2 Tu 1 . - CDS 4005 - 5039 895 ## COG1289 Predicted membrane protein - Prom 5080 - 5139 4.0 - Term 5108 - 5163 15.7 5 3 Op 1 3/0.000 - CDS 5173 - 7668 2483 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 6 3 Op 2 . - CDS 7671 - 8138 358 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 8176 - 8235 7.4 - Term 8235 - 8285 0.5 7 4 Op 1 . - CDS 8443 - 9630 1157 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 8 4 Op 2 . - CDS 9650 - 10003 328 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 9 4 Op 3 . - CDS 9963 - 10655 744 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 10872 - 10931 6.5 + Prom 10721 - 10780 6.8 10 5 Tu 1 . + CDS 10810 - 11658 801 ## COG1737 Transcriptional regulators + Term 11673 - 11705 4.2 - TRNA 11704 - 11777 86.8 # Pro TGG 0 0 Predicted protein(s) >gi|308151772|gb|GL476250.1| GENE 1 44 - 1606 1587 520 aa, chain - ## HITS:1 COG:lin0472 KEGG:ns NR:ns ## COG: lin0472 COG2508 # Protein_GI_number: 16799548 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 517 1 524 531 323 35.0 6e-88 MSVRVNDLLKLPSLREATVLSGKNQLDTSVASLSFLEVSDMSLFSEKLHKTNEYHAGEIL IGSFCAIRHDVVKQCETIRHLHELGEVGLILYYVGIIVPKVAEEVIQLADSLGFILIQMP KNDPTLRYNEVIYEVMKLLVNKNKMASFATDLLEKVSLLPEQNRSVEMTLKILSDFLKVN IALTTYTNEIISTINWPRSTKLPLTKLLYQSQEKVALGETTYFITSQKLPQKDGQTLKLY FIREEEQLTSFEMNQAVEVVQMALNLWGKNYDEVSEYALVQAIINDESDKMYQLAKKLMI DISSVETMWLLPIWQQGQEIHAIQQDLKDFLRYYYQTTIVQQTENYLIVLLGNYLHKQPE ATISKEYLQATDYQDYLGEIILCPKVRNTTEVRVSYQTANQVAPFLKRVYPQRKVLSIAE IRTVQQMMTCLQAGEEAIQQRLAVIQPLLKESEQLMTLGTFLLDASSDFKECGERLFVHK NTVKYRISKINEALGYDMTNAAEAYEVYLAMILYRLVTNE >gi|308151772|gb|GL476250.1| GENE 2 1630 - 2877 1500 415 aa, chain - ## HITS:1 COG:SP1429 KEGG:ns NR:ns ## COG: SP1429 COG0826 # Protein_GI_number: 15901282 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Streptococcus pneumoniae TIGR4 # 7 415 3 410 428 631 74.0 0 MKVMTERTLKRPEVLAPAGTLEKLKVAIRYGADAVYIGGNAYGLRSRAGNFTPEEMAEGV AFAREHNAKVYVAANMVTHEGNQEGAGAFFRELRDIGISAVIVSDPALIEICATEAPGLP IHLSTQASATNYETLEFWKNEGLERVVLAREVSMEEVAAIRENTDIEIEAFIHGAMCISY SGRCTLSNHMSMRDANRGGCSQSCRWKYELFDMPFGTERRSKTSEGEVEEEFSMSAVDMS MIEHIPELIENGVDSFKIEGRMKSIHYVSTVANVYKKAVDSYMEDPENYVCQQEWIDELW KVAQRELATGFYYNTPSENEQLFGERRKIPQYKFVGEVIAYNEKTQVATIRQRNLFSVGD EIEFYGPGFTHFHQTVKEMYNEDGEAIDRAPNPMMLLTMEVTQPVAVGDMIRKKK >gi|308151772|gb|GL476250.1| GENE 3 2905 - 3825 1220 306 aa, chain - ## HITS:1 COG:L54059 KEGG:ns NR:ns ## COG: L54059 COG0826 # Protein_GI_number: 15673973 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Lactococcus lactis # 1 306 1 307 307 357 56.0 2e-98 MIELIATAESVEQAVELLATGVDTLYIGEEIFGLRLPVSFTRDEQREIVKRAHEMGKQVL VAVNGIMHPEKMKLVPEYLTFLKEINVDKITLGDPGIVFIMQRDGLEIPYVYDGETLVTS SRQINFWSKRGAIGAVLAREVPFEEMVAMEENLAVPAEILVYGATCIHQSKRPLIQNYYN YTKNDKGVTKDEGLFISEPKKPETHYSIYEDSHGTHIFANNDVNLMNELTNLYDHHYRTW KLDGLYTPGENFVAIARLFAEAKAALEAGTWSEDQAAHATAEIEKLHPTGRGLDNGFFDL SADAIK >gi|308151772|gb|GL476250.1| GENE 4 4005 - 5039 895 344 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 328 29 337 361 98 27.0 2e-20 MEQSFFRELLHYQRPKDNPFRLVFAGLVMFSILFLGYINHQLLISSFGSLGIFTFLYYQP LPLKQLMTRLSVVGSYLFLGNLLGMLSTHIAWLIPIVVALVGFGGRFFFEVYDISKPGAF FGVMVTAMGASTSIPLAKIPFMSGCMLLGIGFSILFALVLHFTEKEISAPLAKRSLRERI YRHPEAPLDSIYYSFVLFFAVYISESLHLQNPYWLVVSCASILQGDNLRAIKQRNIQRIF GTTIGLVISAFLLNLALTTFESIVVITILFVTVEYFIRRNYGLAQFFTTPMALMLSLLVR QQYVITLIQFRFLGIVLGSLLGLAAAWLFTVVVTFYERKYHLNE >gi|308151772|gb|GL476250.1| GENE 5 5173 - 7668 2483 831 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens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gi|308151772|gb|GL476250.1| GENE 6 7671 - 8138 358 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 154 158 142 47 1e-33 MSNQNTSDLIEAYLKKILEESNKIEIRRAEMANLFNCVPSQINYVINTRFTIQRGYAVES KRGGGGYIRIVKVQISDNDQLLKQMDQLIGATLTEKDALTFIQTLYEEEVITKKEGNLML AALSKSTLNGLGNHEDFLRAQIMRSFLERLSYEEE >gi|308151772|gb|GL476250.1| GENE 7 8443 - 9630 1157 395 aa, chain - ## HITS:1 COG:mll0856 KEGG:ns NR:ns ## COG: mll0856 COG0626 # Protein_GI_number: 13470999 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 24 388 31 393 395 261 38.0 2e-69 MHVENDENICCEVEKGMEKMYHPMVPELVQTSSFYFPTYEEFMAASIDEKNNYVYTRGTN PTTEILEKKIARLERGEKCKVFASGMGAISATLFTLLQQGDHVLMVNTIYGESVSFVQYL EKFGVSLTKVDVAETEELFQFVQENTKVIYFESPSSQKFELLDLEKITALAQKIGAYTVI DNTWASPLFQHPLCHNVDLVIHSCSKYIGGHSDIVAGAVIGKAALVDQIFEHGHQALGAV NSPFNSWLALRGIRTMPVRLAHQSQAIQTVLSALQKDPRISRLYHPFVGNQQQQALAEKY LTGYGSLFAIDLKDTDFERLKTFVNALTLVTIGVSWGGFESLALPVFKGNNLAAVQKRGL SPAHIRMYVGLEEPTSIIEDIQQALDQAYGEETLL >gi|308151772|gb|GL476250.1| GENE 8 9650 - 10003 328 117 aa, chain - ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 1 109 336 444 450 108 44.0 2e-24 MSKISFVPAFFNINEPLIFGLPVIFNPLLLIPIAVAPIVSVLIAFLSMKIGFMPMFTNIQ APWATPFLFSGFLVGKWQGAVTQVLAVAASVVIYYPFVKALDRQYQKEEAHEVPETL >gi|308151772|gb|GL476250.1| GENE 9 9963 - 10655 744 230 aa, chain - ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 197 1 202 444 140 38.0 2e-33 MDKLTNWVEQAVVPKVSRITSLRYFQALRNGFFAIMPLTIIGSIFMLITDFPVAGYGDFM AGIFGAGWADMISPAYRATFNMMGIIFAGTMSYKLAESYEMDRLTSLILGIVAYVVVLPK TVTTESGEVVTKVLSFDWLGTQGVITAIIMSILSVELTRFCIKKKLVIKMPDSVPSMVSQ AFSALIPGIFVVAVALLINGIGLSFADSFPQLIYNESHVENFVCSSIFQH >gi|308151772|gb|GL476250.1| GENE 10 10810 - 11658 801 282 aa, chain + ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 257 13 255 283 96 28.0 5e-20 MNLIECLEQKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTETS GFKEFKIRLSRDLEIHYQAIRNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLTEA MLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINATKN DVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADFKV STFSSQLAIEYILNVLYSCIFSRNFDKNYTSQKNTPTSILKF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:37:31 2011 Seq name: gi|308151771|gb|GL476251.1| Enterococcus faecalis TX4000 genomic scaffold Scfld13, whole genome shotgun sequence Length of sequence - 1062 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 10 - 969 206 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 1002 - 1061 4.4 Predicted protein(s) >gi|308151771|gb|GL476251.1| GENE 1 10 - 969 206 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 5 307 11 315 317 84 27 5e-17 MTYTHLTSNELAMIEAYYNNHQSVAKTAVLLNRSRQTIHKVYQFFKTGHNALDYFNQYKK NKTRCGRRPIVLSDEQTEYIQKRVVQGWTPDVIVGRAEFSISCSMRTLYRMFKQGVFEGT HLPMKGKRKANGHKETRGKQSFRRSLRDRGNDYSKFNQEFGHLEGDTIVGKKHKSAVITL VERLSKVIITLQPEGRRAIDIENRLNQWMQSVPKHLFKSMTFDCGKEFSNWKSISNINDI DIYFADPGTPSQRGLNENSNGLLRKDGLPKQMDFNEVDESFIQSIASKRNNIPRKSLNYK TPIEVFLSHICKEELSNLI Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:37:44 2011 Seq name: gi|308151770|gb|GL476252.1| Enterococcus faecalis TX4000 genomic scaffold Scfld16, whole genome shotgun sequence Length of sequence - 42821 bp Number of predicted genes - 48, with homology - 47 Number of transcription units - 21, operones - 8 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 45 - 104 6.3 1 1 Op 1 25/0.000 + CDS 223 - 1227 1063 ## COG0438 Glycosyltransferase 2 1 Op 2 . + CDS 1274 - 2497 1333 ## COG0438 Glycosyltransferase + Term 2501 - 2556 11.9 3 2 Tu 1 . + CDS 2570 - 3460 1205 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases + Prom 3474 - 3533 7.0 4 3 Tu 1 . + CDS 3561 - 3791 320 ## EF2888 hypothetical protein + Term 3815 - 3866 8.7 + Prom 4080 - 4139 4.5 5 4 Op 1 4/0.000 + CDS 4181 - 4621 562 ## COG1846 Transcriptional regulators 6 4 Op 2 . + CDS 4637 - 5602 996 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 7 4 Op 3 . + CDS 5655 - 5882 550 ## EF2884 acyl carrier protein + Prom 5886 - 5945 1.8 8 5 Op 1 3/0.000 + CDS 6019 - 6975 1161 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 9 5 Op 2 26/0.000 + CDS 7008 - 7937 1173 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 10 5 Op 3 11/0.000 + CDS 7941 - 8678 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 11 5 Op 4 4/0.000 + CDS 8697 - 9932 1499 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 12 5 Op 5 4/0.000 + CDS 9934 - 10422 655 ## COG0511 Biotin carboxyl carrier protein 13 5 Op 6 4/0.000 + CDS 10426 - 10851 562 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 14 5 Op 7 4/0.000 + CDS 10859 - 12229 1654 ## COG0439 Biotin carboxylase 15 5 Op 8 10/0.000 + CDS 12285 - 13151 778 ## COG0777 Acetyl-CoA carboxylase beta subunit 16 5 Op 9 . + CDS 13153 - 13941 1065 ## COG0825 Acetyl-CoA carboxylase alpha subunit + Term 13948 - 13998 3.1 + Prom 13945 - 14004 10.2 17 6 Op 1 6/0.000 + CDS 14163 - 14690 723 ## COG2179 Predicted hydrolase of the HAD superfamily 18 6 Op 2 2/0.000 + CDS 14687 - 15796 1437 ## COG1161 Predicted GTPases 19 6 Op 3 7/0.000 + CDS 15820 - 16131 286 ## PROTEIN SUPPORTED gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 20 6 Op 4 9/0.000 + CDS 16149 - 16808 604 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 21 6 Op 5 6/0.000 + CDS 16786 - 17376 862 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism + Prom 17452 - 17511 3.5 22 6 Op 6 6/0.000 + CDS 17612 - 17761 162 ## COG0799 Uncharacterized homolog of plant Iojap protein 23 6 Op 7 3/0.000 + CDS 17763 - 18503 874 ## COG0500 SAM-dependent methyltransferases + Term 18525 - 18563 -0.7 + Prom 18512 - 18571 4.8 24 6 Op 8 . + CDS 18593 - 19771 942 ## COG1323 Predicted nucleotidyltransferase + Prom 19775 - 19834 3.4 25 6 Op 9 . + CDS 19858 - 20577 1138 ## COG0217 Uncharacterized conserved protein + Term 20606 - 20658 16.5 + Prom 20605 - 20664 7.7 26 7 Tu 1 . + CDS 20824 - 21642 582 ## EF2864 hypothetical protein + Term 21794 - 21828 4.3 27 8 Tu 1 . - CDS 21703 - 21780 66 ## - Prom 21837 - 21896 4.2 - Term 21838 - 21883 5.6 28 9 Tu 1 . - CDS 21922 - 22866 1304 ## EF2863 endo-beta-N-acetylglucosaminidase - Prom 22926 - 22985 4.0 - Term 22973 - 23021 14.0 29 10 Tu 1 . - CDS 23024 - 23605 643 ## COG1434 Uncharacterized conserved protein - Prom 23636 - 23695 9.5 + Prom 23493 - 23552 5.6 30 11 Tu 1 . + CDS 23727 - 24590 826 ## EF2861 aminoglycoside 6-adenylyltransferase + Prom 24601 - 24660 4.8 31 12 Tu 1 . + CDS 24737 - 26182 1534 ## COG1376 Uncharacterized protein conserved in bacteria + Term 26240 - 26288 7.1 + Prom 26259 - 26318 6.6 32 13 Tu 1 . + CDS 26348 - 26527 303 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Prom 26756 - 26815 6.5 33 14 Tu 1 . + CDS 26924 - 28861 2824 ## COG0441 Threonyl-tRNA synthetase + Term 28875 - 28922 15.2 + Prom 28908 - 28967 8.3 34 15 Op 1 . + CDS 29026 - 31161 2167 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Prom 31180 - 31239 5.8 35 15 Op 2 . + CDS 31287 - 31436 267 ## PROTEIN SUPPORTED gi|29377324|ref|NP_816478.1| ribosomal protein L33 + Term 31449 - 31496 8.3 + TRNA 31532 - 31621 62.4 # Ser CGA 0 0 + Prom 31546 - 31605 80.4 36 16 Op 1 . + CDS 31711 - 31962 455 ## EF2797 hypothetical protein + Term 31999 - 32051 4.2 + Prom 31971 - 32030 5.4 37 16 Op 2 . + CDS 32218 - 33282 629 ## EF2796 hypothetical protein 38 17 Tu 1 . - CDS 33345 - 34847 809 ## BBPR_0060 hypothetical protein - Term 35210 - 35258 5.4 39 18 Tu 1 . - CDS 35384 - 35959 669 ## COG3152 Predicted membrane protein - Prom 35982 - 36041 8.4 + Prom 36039 - 36098 5.7 40 19 Op 1 . + CDS 36125 - 36895 938 ## COG1073 Hydrolases of the alpha/beta superfamily + Prom 36904 - 36963 4.0 41 19 Op 2 4/0.000 + CDS 36983 - 37525 595 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 42 19 Op 3 3/0.000 + CDS 37536 - 38246 758 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 43 19 Op 4 5/0.000 + CDS 38264 - 38482 427 ## COG4483 Uncharacterized protein conserved in bacteria 44 19 Op 5 2/0.000 + CDS 38483 - 39454 1107 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 45 19 Op 6 . + CDS 39470 - 39868 619 ## COG0607 Rhodanese-related sulfurtransferase + Term 39878 - 39915 6.4 + Prom 39911 - 39970 1.8 46 20 Op 1 . + CDS 39990 - 40340 580 ## COG3189 Uncharacterized conserved protein 47 20 Op 2 . + CDS 40354 - 42192 1582 ## EF2785 hypothetical protein + Term 42232 - 42280 16.5 - Term 42272 - 42311 2.4 48 21 Tu 1 . - CDS 42355 - 42522 384 ## EF2784 hypothetical protein - Prom 42723 - 42782 7.9 Predicted protein(s) >gi|308151770|gb|GL476252.1| GENE 1 223 - 1227 1063 334 aa, chain + ## HITS:1 COG:L189090 KEGG:ns NR:ns ## COG: L189090 COG0438 # Protein_GI_number: 15674119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 333 1 330 332 373 56.0 1e-103 MKILLYFEGEKILAKSGIGRALDHQKRALSEVGIEYTLDADCSDYDILHINTYGVNSHHM VRKARKLGKKVIYHAHSTEEDFRNSFIGSNQLAPLVKKYLISLYSKADHLITPTPYSKTL LEGYGIKVPISAISNGIDLSRFYPSEEKEQKFREYFKIDEEKKVIICVGLFFERKGITDF IEVARQLPEYQFIWFGDTPMYSIPKNIRQLVKEDHPENVIFPGYIKGDVIEGAYAAANLF FFPSREETEGIVVLEALASQQQVLVRDIPVYQGWLVANENCYMGHSIEEFKKYIEGLLEG KIPSTREAGYQVAEQRSIKQIGYELKEVYETVLS >gi|308151770|gb|GL476252.1| GENE 2 1274 - 2497 1333 407 aa, chain + ## HITS:1 COG:L190226 KEGG:ns NR:ns ## COG: L190226 COG0438 # Protein_GI_number: 15674120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 386 1 386 446 431 56.0 1e-120 MKIGFFTDTYFPQVSGVATSIKTLKDELEKHGHEVYIFTTTDPNATDFEEDVIRMPSVPF VSFKDRRVVVRGMWYAYLIAKELELDLIHTHTEFGAGILGKMVGKKMKIPVIHTYHTMYE DYLHYIAKGKVVRPSHVKFFSRVFTNHTTGVVCPSERVIEKLRDYGVTAPMRIIPTGIEI DKFLRPDITEEMIAGMRQQLGIEEQQIMLLSLSRISYEKNIQAIIQGLPQIIEKLPQTRL VIVGNGPYLEDLKELAEELEVSEYVQFTGEVPNEEVAIYYKAADYFVSASTSETQGLTYT EAMVAGVQCVAEGNAYLNNLFDHESLGKTFKTDSDFAPTLIDYIQANIKMDQTILDEKLF EISSTNFGNKMIEFYQDTLIYFDQLQMEKENADSIKKIKVKFTSLRK >gi|308151770|gb|GL476252.1| GENE 3 2570 - 3460 1205 296 aa, chain + ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 1 292 1 292 293 365 63.0 1e-101 MSKIGFIGTGVMGKSIIRNMMKNNLSVNVYNRTKSKTDDLVAEGAVWYDTPKAIAEASDI IFTMVGFPSDVEGVYFNETGIFQADLTGKIVVDLTTSTPTLAEKIAKKAAEVGAHALDAP VSGGDLGAKNGTLTIMVGGDQESYDTVLPIFKTFGKTFMLHGSAGKGQHTKMANQLMIAG TMTGLTEMLVYANATGLTLEKVLETVGGGSAANWSLSNYGPRILKEDYTPGFFVKHFIKD LKIALDEAKKLDLPLLATQKATELYESLADKGFENDGTQALIKLWWTDGKQPTNKN >gi|308151770|gb|GL476252.1| GENE 4 3561 - 3791 320 76 aa, chain + ## HITS:1 COG:no KEGG:EF2888 NR:ns ## KEGG: EF2888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 8e-27 MKHSQLVAIIKRLEAMIEAADNEVQVRRFEREGVEKCIVSFDKSTETFELTESDTHQSYQ FDNIDIVAMEIYDLIQ >gi|308151770|gb|GL476252.1| GENE 5 4181 - 4621 562 146 aa, chain + ## HITS:1 COG:CAC3579 KEGG:ns NR:ns ## COG: CAC3579 COG1846 # Protein_GI_number: 15896813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 144 1 144 154 156 59.0 1e-38 MEPNLETVNDYLVSVFNDILTIEESELKKSQFNDLSITEMHTIEAIGMYKKKTSSEVAKE LSITVGTLTVAINNLVKKGYVERLRSEDDRRVVKLGLTKKGKLLFRVHQHFHREMVKNIL KGMEQEEEQALLRALKNLHDFLQEYK >gi|308151770|gb|GL476252.1| GENE 6 4637 - 5602 996 321 aa, chain + ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 321 3 324 324 367 57.0 1e-101 MKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVA KQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVYAL SMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEAAETPHFLNEKL QADGQRWTALTSGYTINESPFYQGHEQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETV DYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQ QRVVLTGFGGGLTWGSLLLTL >gi|308151770|gb|GL476252.1| GENE 7 5655 - 5882 550 75 aa, chain + ## HITS:1 COG:no KEGG:EF2884 NR:ns ## KEGG: EF2884 # Name: acpP # Def: acyl carrier protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 83 100.0 3e-15 MVFEKIQAIIVEELGKDAEEVQLTTNIQEELDADSLDLFQIINEIEDEFDVKIETEDGIQ TVQDLVTYVEKQQAN >gi|308151770|gb|GL476252.1| GENE 8 6019 - 6975 1161 318 aa, chain + ## HITS:1 COG:SP0419 KEGG:ns NR:ns ## COG: SP0419 COG2070 # Protein_GI_number: 15900338 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 324 394 68.0 1e-109 MNQQLCELLGINYPIFQGGMAWVADASLASAVSNAGGLGIIAGGNAPKEVVKKEIKKVKE LTEQPFGVNIMLLSPFADEIVDLVCEEQVPVVTTGAGNPAKYMARFKEHNIKVIPVVPSV ALAKRMEKIGADAVIFEGMEAGGHIGKLTTMSGLPQIVDAVSIPVIAAGGIGDGRGMAAA FMLGAEAVQLGTRFLIAKECNVHPDYKQKVLKARDLDAVITCQHFGHPVRTLKNKLTAQY NQLEKQELQKEVPDLEMFEKIGQGALRKAVVDGDMDYGSVMAGQIAGLIKKEETAQEIID SLMSECKAIVHKMNQRWG >gi|308151770|gb|GL476252.1| GENE 9 7008 - 7937 1173 309 aa, chain + ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 303 3 304 306 343 61.0 3e-94 MKTAILFSGQGAQYQGMGEELYHQEAIVRETFDEASHILGYEMAELCFTENERLNETEYT QPAILTVSVAFYRLLQQKGLTPDVVAGLSLGEYSALVASGALRFSEAVALVQKRGQYMTE AAPQGTGKMVAVMNAEREVIEKACQEASAFGIVAPANYNTPQQIVIGGEVAAVDQAMTLL KEASVKRMIPLNVSGPFHTALLQPASKKLAQDLAKLNFQTMQIPVISNTTAEIMPQEAIQ ALLEKQVMSAVRFEDSIETMKAMNVGTMIEVGPGKTLTGFVKKIDKTIEMHRVEDVATLT ETLTALTGR >gi|308151770|gb|GL476252.1| GENE 10 7941 - 8678 214 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 87 28 2e-16 MELTGKNVFITGSTRGIGKAVALAFAKEGANIVLNGRSEITPEQRKEIEAFGVKCIGLSG DISDFDAAGEMIQATVDQLGSIDILVNNAGITNDKLLLRMTKEDFNACLDINLVGTFNMT QQAVKRMMKQRSGRIINMASVSGLMGNVGQANYAASKAGVVGFTKSVAREVAPRGITCNA IAPGFIQTEMTDVLSEKVKTQMNAQIPLQTFGQVEDVAATAIFLAKSPYITGQVVNVDGG LVMHG >gi|308151770|gb|GL476252.1| GENE 11 8697 - 9932 1499 411 aa, chain + ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 3 410 411 475 58.0 1e-134 MNRVVITGYGVTSPIGNEPETFLESLKTGKNGIGPISKFDVSETGVTLAAEVKDFPMEKY FVKKDGKRMDKFSLFGIYAALEAMAMSGLDTSQLDVDRFGVMVGSGIGGLETIQNQVIRM HDKGPERVAPLFIPMAIGNMVAGNIALRVGAKGICTSTVTACASATHSIGEAFRNIKHGY SDVIIAGGAEAPITEIGISGFASLTALTKATDPEKASIPFDKERSGFVMGEGAGVFILES LDHALERGATILGEVVGYGANCDAYHMTSPTPDGSGAAKAMVLAMEEAGISPEKIGYINA HGTSTQANDSAESKAIELALGDAAKTAYVSSTKSMTGHLLGAAGGIEGIATLNALQHQFI PPTINVENQDEAITVNVVLNESKEHKFDYALSNSLGFGGHNAVICLKRWED >gi|308151770|gb|GL476252.1| GENE 12 9934 - 10422 655 162 aa, chain + ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 160 161 110 45.0 1e-24 MQLEEVKALLTQFDQSTLTEFDLREGSFELYMNKNTVSGRSAVEPVAQPQETPVAASGVS VPVETVSVAEETPTNTPTANEKTEEITSPIVGIVYLQPAPDKENFVKVGDTVKTGDVVCI VEAMKLMNEITATVDGVITEILVNNEDVVEFGQPLFRVAKGE >gi|308151770|gb|GL476252.1| GENE 13 10426 - 10851 562 141 aa, chain + ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 1 140 1 140 141 165 59.0 3e-41 MKLTITEIQEILPHRYPFLLLGSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVL IIESLAQAGAVALLSMPEFKGKTAYFGGLDKAKFRQKVTPGDTLILEVELLKVRASAGMG KGVAKVNGKKVAEAELTFMIG >gi|308151770|gb|GL476252.1| GENE 14 10859 - 12229 1654 456 aa, chain + ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 1 452 455 659 73.0 0 MFSKVLIANRGEIAVRIIRACRELGVQTVAVYSEADQEALHTQLADEAICIGPAKATDSY LNVQAVLSAAIVTNAEAIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINAR QLMQKAKVPVIPGSDGVIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKH FTSAQQEAKAAFGNDDMYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVLE ESPSIAISEEKRQMLGETAVRAAQAVHYENAGTIEFLMDPAGDFYFMEMNTRIQVEHPVT EMVTGIDLVKAQLEIASGEPLGYTQEDVIMSGHAIECRINAENPAFNFAPSPGKIQNLLL PSGGMGLRVDSAMYSGYSIPPYYDSMIAKVIVHGENRFDALMKMQRALNEIVTEGIITNA EFQLDLITHDNVLTGDYDTSFLQETFLPNWEPESNH >gi|308151770|gb|GL476252.1| GENE 15 12285 - 13151 778 288 aa, chain + ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 288 406 68.0 1e-113 MALFKKKNYIRINPNRADANDASKKPSVPDNMWAKCPSCKRTLYTKEMGAEKICPHCGYS FRIGAWERLAITVDEKSFHNWDSELVTKDPLNFPGYLEKIEKMQEKTGLDEAVLTGEATI EGQAVAIGIMDANFIMGSMGTIVGEKITRLFERATEKHLPVVIFTASGGARMQEGIFSLM QMAKISAALQRHNKAGLLYLTVLTDPTTGGVTASFAMDGDIILAEPQSLIGFAGRRVIEQ TIRQELPDDFQKAEFLLEHGFVDQIVPRNLLRQRLSDLLRLHSLEGWR >gi|308151770|gb|GL476252.1| GENE 16 13153 - 13941 1065 262 aa, chain + ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 10 261 13 264 274 322 62.0 3e-88 MEKKTANDVVTLARAQDRLTTLEYIEAIFEDFLEFHGDRYFADDLAVVGGVATLQGKPVT VVGIQKGRNLPENIERNFGSPNPEGYRKALRLMKQAEKFNRPVITFVNTAGAYCGIGAEE RGEGEAIAQNLLEMSDLKVPIISVIIGEGGSGGALALAVADEVWMLEHTIYAVLSPEGFA SILWKDGSRAKEAAELMKITATELKELAIVDKVIPEVMNGQPLEQAKINRMLQKAFISKL TELAKLDTETLLEKRYQRFRKY >gi|308151770|gb|GL476252.1| GENE 17 14163 - 14690 723 175 aa, chain + ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 174 25 194 194 189 52.0 2e-48 MFSKYKPTWMIDAIYKITPAQLKKLGIKAVLTDLDNTLIAWNNPDGTEELKTWLLEMKNA GITVLVVSNNKDSRIKRVVEKFDLDYVARALKPTARGFKLAEKKLGLKPSEMLMVGDQIM TDIRGANAAGIRNVLVQPIVDTDGWNTRINRFFERKIMKYLSKKHPEMTWRGGLE >gi|308151770|gb|GL476252.1| GENE 18 14687 - 15796 1437 369 aa, chain + ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 516 65.0 1e-146 MTEAIHCIGCGAIIQTENPHELGYTPKTAFEKGMETGEVYCQRCFRLRYYNDIQDVQLTD DDFLRLLNGLGTEDALIVNVVDIFDFNGSLIPGLHRFIGDNPVLLVGNKVDILPKSLKKP KMVQWMRERAHEAGLRPVDVLLTSGKKPQEMQELLDTIEKYREGRDVYVVGVTNVGKSTL INQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFLIDTPGIIHRHQMAHYLGKKDLK IIAPQKEIKPKVYQLNAEQTLFLGGLARFDYVQGAKSSFIAYVSNDLNLHRTKTATADAF YEKHVGGLLQPPRADEVAEFPELVRFEFSVKEKTDIVFAGLGWITVTEPGVVAGWAPKGV DVLRRKALI >gi|308151770|gb|GL476252.1| GENE 19 15820 - 16131 286 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4] # 1 103 1 103 103 114 58 7e-25 MKLRGKQKRYLRSQAHHLQPIFQVGKGGLNDAMITQIDEALEKRELIKITLLQNTDEVAE EVAEELTAAIHCDVVQIIGRVLVLFKPSSKEKYQKISAAVKEI >gi|308151770|gb|GL476252.1| GENE 20 16149 - 16808 604 219 aa, chain + ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 211 15 209 209 245 62.0 4e-65 MGEKRQARQGADVLLQEEPLRFQTRKQVGLLGGNFNPVHLAHLVMADQVQNQLGLDKVYL MPTYLPPHVDEKKTISSEHRLAMLELAVADNPCLDIEPIELIRKGKSYTYDTMKALKEAN PDTDYYFIIGGDMVEYLPKWHRIDDLLHLVQFVGIRRPNYPTESTYPIIWVDVPQMAISS TLIRQKVKSGCSIRYLLPENVINYIQEKGLYQDELDNKL >gi|308151770|gb|GL476252.1| GENE 21 16786 - 17376 862 196 aa, chain + ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 191 5 190 197 177 48.0 1e-44 MSWITNYDAAQRELLMQKVQMQMSERRFRHVLGVEETAVALAAKYGADEAKASIAALTHD YAKERPNDEFELIIRRDGFDLALLNYGNEIWHGLVGADIVQRELAIDDEEILQAIRVHTT GAAKMSLLDKIIYVADYIEPGRDFPGVKEAREIVLVDLDAAVAYETKHTLLHLIEQEHKI YPKTLETYNQWVVNQK >gi|308151770|gb|GL476252.1| GENE 22 17612 - 17761 162 49 aa, chain + ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 46 69 114 118 72 69.0 2e-13 MEGKDGGKWILIDLGDVIVHVFQSSERAFYNLEKLWSDAPMVDLSAWVD >gi|308151770|gb|GL476252.1| GENE 23 17763 - 18503 874 246 aa, chain + ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 3 245 4 244 244 274 56.0 1e-73 MAYETFAFVYDEVMDESLYQKWLDFSNRHLPQGTQQILEMACGTGALAVDFAKSGYDVTA LDLSEEMLMIASERAFEEEVPVQFVQGNMLDLSEVGQYQAITCFSDSLCYMANRQEVQQV FDEVYQALEEEGTFIFDVHSTYKIDSVFPEYSYHYQTEEFAFLWDSYAGEKEHSIEHFLT FFVKEQETDEHFVRYDELHQERTYSLDNYLRMLESAGFMNVKVYADFTDEAPTETSERWF FVCQRD >gi|308151770|gb|GL476252.1| GENE 24 18593 - 19771 942 392 aa, chain + ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 391 1 408 415 306 39.0 3e-83 MKACGIIVEYNPFHNGHRYHAQQARQQSGAEVVIAIMSGNFLQRGEPALLDKWARAEEAL QNGVDLVIELPTAWSVQSADYFAKGGIKLLQALQCESLCFGTDSTSAIDYAAFGQFVQEN QSLIDQTFHALTDKQLSYPQKMTAVFRQVYPESRFDFSSPNHILGMSYAKENATYPTPMT LYPIARKQAGFHDATISGKVASATAIRQSVFQQEITQVLPTVPSITAQHLQTQTMISWEN YWPFLKYKIVHSSLEELQAIYQMTEGLEYRLKDQIQAAGSFHELMERMKTKRYTWTRLQR LATYILLNMTKEEVETVWQDSYLHVLGFTPKGQAYLKETKAQIQLPVISKVSKENRAMLS LDIRANQLYQMGDSSLKEQNFGRFPLRFSPDT >gi|308151770|gb|GL476252.1| GENE 25 19858 - 20577 1138 239 aa, chain + ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 239 367 79.0 1e-101 MGRKWANIKEKKAAKDANNSRVYAKFGIEIYVAAKSGDPDPHANQKLRFVIERAKTYNVP KHIIDRAIEKAKGSADEQYSELRYEGFGPNGSMVIVDALTNNVNRTAADVRAAFGKNGGN MGVSGAVSYMFDNTGIIGFAGDDADEILEYLMEKDIDVRDVVEEDGQIIVYTEPEDFHHA QEALKEKGIEEFTVTELEMVPQNEVTLEGDDLANFEKMLDVLEDLEDVQKVHHNVDLPE >gi|308151770|gb|GL476252.1| GENE 26 20824 - 21642 582 272 aa, chain + ## HITS:1 COG:no KEGG:EF2864 NR:ns ## KEGG: EF2864 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 272 1 272 272 427 95.0 1e-118 MFAFFVGLAVLSLTACREPKEKKVTASTEASSKVEETNEKMSETIDKTNEQASHSVESNE SVKNEESTADEDNSQLTVADLDTTAINAGDFTTLVGTWKNGKGESLIIHPDGSTNTGGMI TKDSPTDESRPITSLSIRWGPTGAALLLYRIGVENPNGDQSDKTKPRLLITQDSGNYPAE EYYYRSSEEENQDQNEEAKIIDTQEKAETYIRKTLTDAENNDTNLGFLGMNGNDFFFRAQ SKQMVANGGTGTVGFYRVSPQGAVRITDARGN >gi|308151770|gb|GL476252.1| GENE 27 21703 - 21780 66 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKCFVLLRLFVDMLISYKLNVKIL >gi|308151770|gb|GL476252.1| GENE 28 21922 - 22866 1304 314 aa, chain - ## HITS:1 COG:no KEGG:EF2863 NR:ns ## KEGG: EF2863 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 598 100.0 1e-170 MGHQLSTHFFNKKTGIISTFLSLILLVGGLLFALPAFEVQAASTVTPKTVMYVEVNNHDF NNVGKYTLAGTNQPAFDMGIIFAANINYDTVNKKPYLYLNERVQQTLNEAETQIRPVQAR GTKVLLSILGNHEGAGFANFPTYESADAFAAQLEQVVNTYHLDGIDFDDEYAEYGKNGTP QPNNSSFIWLLQALRNRLGNDKLITFYNIGPAAANSSANPQMSSLIDYAWNPYYSTWNPP QIAGMPASRLGASAVEVGVNQNLAAQYAKRTKAEQYGIYLMYNLPGKDSSAYISAATQEL YGRKTNYSPTVPTP >gi|308151770|gb|GL476252.1| GENE 29 23024 - 23605 643 193 aa, chain - ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 192 11 188 189 164 46.0 7e-41 MHWLKITSLSIVSFGFCILLILGLLIFTGKNTQPTDKPDAILILGARVLGTSKETALPSR VLQARLDVAIPYIKQHPETPVIVSGGQGADEPATEAAVMKQYLLNKGVPEKQILLENRAT RTKENIVNSQKLFSFKRLVIVTSDFHMYRSQLLAKRAGISNVSGITAASSFPKDIKNFGR ELLSLGYALLFDW >gi|308151770|gb|GL476252.1| GENE 30 23727 - 24590 826 287 aa, chain + ## HITS:1 COG:no KEGG:EF2861 NR:ns ## KEGG: EF2861 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 287 1 287 287 575 100.0 1e-163 MRTEEEMFQLIMDVAKQEEHIRAVGMVGSRTNVKAPKDSFQDFDIVYIVEPCAEFFETAT WIAKFGQPLIMQRPKEMTLFPTEPKTRETFLMLFEDGQRIDLTLCPLAEKDNWHEGDSLA IILLDKDENLPPLPVASDKNYTVTVPDQQQFNDCCNEFWWVSTYVVKGLCRNELFYAVTH LYEYCQQELLRLLSWQAAWQEPEPISVGKQFKYLKNYVTPDTMDQLASLLDFSSKEACWN SLIKTQAFFDVVAQDFAKMAQFTYHLQEAKKVTEYTNSLRLKDLQGK >gi|308151770|gb|GL476252.1| GENE 31 24737 - 26182 1534 481 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 6 460 1 465 466 113 24.0 7e-25 MKKEEMQMRNTRRQKSGKNNKKKVIITSLVGLALVAGGSYVYFQSHFLPTTKVNGVSVGW LNVNAAEEKLAQVNQTEEVVVQTGTKEEKIQLPKKYQLDQKFLKDHLHSSKVKLPLNEAF KKELEAKLATLSFPEGKPSKNASIRRGNGTFEIVPEEQGTVVDTQRLNQQIIADVEAGKG NYQYNAKDFYKAPEITKEDQTLKATLTTLNNKLNKTITVDINGEKVAFDKTQIQNVLNDD GTINKEKLTTWVTQLETTYGSANQPVLFTDVRGTTRRFKNNGSYGWSIDGAKTQELLVNA LNSQEQTNAITAPLVGDTKENSKIANNYIEIDLKDQKMYCFIDGKKIVTTDVITGRYNKG TATVPGFHTILYRTTDVNLEGQMLDGSRYSVPVKYWMPLLSQGGVVTQIGIHDSDHKLDK YGDKEAFKTDAGSNGCINTPGTEVSKIFDVSYDGMPVIIYGHIYDDAPGEFDKPVDYGEE V >gi|308151770|gb|GL476252.1| GENE 32 26348 - 26527 303 59 aa, chain + ## HITS:1 COG:L168282 KEGG:ns NR:ns ## COG: L168282 COG1942 # Protein_GI_number: 15672556 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Lactococcus lactis # 1 59 1 59 61 65 59.0 3e-11 MPFVHVELIEGRTEEQLTNMVKDITEAVSKNAGAPKENIHVIVNELKKDRYAQGGEWKK >gi|308151770|gb|GL476252.1| GENE 33 26924 - 28861 2824 645 aa, chain + ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 645 2 642 647 986 74.0 0 MSIHITFPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEI VTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLP AIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVDL CRGVHVPSTGRIQVFKLLSVAGAYWRGNSDNHMMQRIYGTAFFDKKDLKEFIKMREEAKE RDHRKLGKELDLFMVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMAD VELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL GMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYADFNITDYRF RLSYRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDVQVKTAL GMEETLSTIQLDFLLPERFDLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAF PTWLAPIQATIIPVSVEAHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPY QLVVGDKEMEDATVNVRRYGSKETSVEDLSIFIDSMAAEVHNYSR >gi|308151770|gb|GL476252.1| GENE 34 29026 - 31161 2167 711 aa, chain + ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 27 709 9 677 680 531 42.0 1e-150 MKKNSFIDKIKKTDAAAKSQRGRKPHIPFRLNLLFFVIFTLFVSLIVRLGYLQIVEGEEF NKKITANSSLQITTPSPRGQIYDSQGKVLVSNKANLAITYTRGKNIEGKDILPIANKVNE LINVPVDPNLTDRDKKDYWLANPENLKAAQARLTDQDKEDEKGNKITDEGTLYAKAVEKV TPEEIAFDDRTLQAVTIFKRMNAASQMNTVFIKNEGVTEGEIATIGEHTAEISGVSTGTD WTRDYSQSGALRSLLGTVSTEKQGLPAEEVDEYLKKGYARNDRVGTSYLEKQYEDVLQGK KAKSEVVLDNNGKIVSQTPISKGEKGSNLKLTIDSNFQNKVDEILQRNYSQIVKTIGPYS ENAYVVAMNPQTGAILAMSGFHHDLATGEVTPNPLAPILNSEVPGSVVKAGTLTAGYETG VIKGNDVLTDEAILLAGSNPKASWWNASGGTTMQLTAEQALEYSSNAYMMKLVFKMMGVN YYPNMIFPYEVGDDTVFKELRKAFAEYGMGTKTGIDIPGETTGIQNKDFKDSSSAPQGGN LLDLSFGQYDTYSALQLAQYVSTVANNGIRVQPHVVEGIYGNDENGALGKILKEIEPKVL NKVNISEDQIGILQQGFYNVVNGTSPFTTARGLKSDKFSIAAKTGTAETQATDTNGVNHT TVNSNLVAYAPYENPEIAISVVLPHLNDESSKPNQTIAKEVLEAYMEMYKK >gi|308151770|gb|GL476252.1| GENE 35 31287 - 31436 267 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377324|ref|NP_816478.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 107 100 1e-22 MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK >gi|308151770|gb|GL476252.1| GENE 36 31711 - 31962 455 83 aa, chain + ## HITS:1 COG:no KEGG:EF2797 NR:ns ## KEGG: EF2797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 83 1 65 65 70 96.0 1e-11 MSNYEEKEAQALAKIADVLNKLDASLEELGSLDEDTKKHSMKKWIVEKKAIHEIKKIAHE AGKYDKYDEKELEKEMDLLEKFM >gi|308151770|gb|GL476252.1| GENE 37 32218 - 33282 629 354 aa, chain + ## HITS:1 COG:no KEGG:EF2796 NR:ns ## KEGG: EF2796 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 568 98.0 1e-160 MTFYQLLQLDPFILKQKIHQADTKKQRRYFWRALLIRDILLVSFAILWVSTITFFFGKAV APFSIVLFCLLLSIRFVSYGYREKQALLSLGIVLTILGVSPLISLISVSFLQLGLHFICL LALFFLTGKNPKMGNPGLYTFSYLYLVGTVHYQSFQQLEQTFFVLVFAYLLLAFVYHVKH KKLDQEITFIQMVTENGFFNQRNIWFGYYALGISLLLFIGTHLQIDRFMWATFASSSLFS GYNTFKLSERAKERIIGVVIGSLVSAILLFYIPTNLLGILGGLCLGLCTSYKSKTIFNCV GAIMVASMIFGLETSLYLRILLNMLGLAYGLLYHFVFVKTMSYCNRKQWLKFSE >gi|308151770|gb|GL476252.1| GENE 38 33345 - 34847 809 500 aa, chain - ## HITS:1 COG:no KEGG:BBPR_0060 NR:ns ## KEGG: BBPR_0060 # Name: not_defined # Def: hypothetical protein # Organism: B.bifidum_PRL2010 # Pathway: not_defined # 3 498 32 539 539 122 23.0 3e-26 MKHFIKENKGLAIYSFLMVFATYGIKLFNNTYAIDTMHLMTNYRGYLKHWVSIGRPGLVA LKLLTYNYVNVYFLNLLAIIFFAIATILLCYYVDLSTKQIYNKKYLYIIPSIFPTSQLFS EQFYFVLQNFEFSLGICLVILSLIAIYHIPNKIFKLFGFLLLAFTLTMYQSFFVFACTLI LFKILMALYFAQLNDLKISFKDYAFKIGHFILLAISSLVLSQLMAMLAKKVLNVESSYLD NMILWGKRPLIDSINDIKDYAKELFFPQVGDTFFTPLFLICVLLLVIVLINMSYLKRKNV FFIFITLLGILITPLMFTILGGKRPAIRGEVPNFPAVLALLLIFIMIYWGYNFVLKHLLI GIVIFFTFIQVRETTNLEYSEYLTAEEDLRTAEMITNNIYSMEIENPESYKLLMYGNRSP RNVSNIKGETNGVSLFEFMPNSVHTSLNTLLYMKTFGLNFNDPTPEDFEKHKALQAEMNV WPSKDSIRVVDDCIVVNLSK >gi|308151770|gb|GL476252.1| GENE 39 35384 - 35959 669 191 aa, chain - ## HITS:1 COG:L133792 KEGG:ns NR:ns ## COG: L133792 COG3152 # Protein_GI_number: 15673282 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 185 3 169 175 62 29.0 4e-10 MVKIEEKGKVTFGQAFKDYFRGYVDFKGRTTRAGYWWMTLVLSILALIFYIAIVGKAVSA ILAAEYFETYDFGNLLPLMLFALVLWLALLLPTWAMCVRRYRDAGMTGWGVLVLYLLSIA CSYTQVFSVMSTFKYDVQTDTVITGGSPVFLFFTLVISLFFFLLTVLPTDKLTTTSQNSV LRFFFRYKEVK >gi|308151770|gb|GL476252.1| GENE 40 36125 - 36895 938 256 aa, chain + ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 3 249 2 248 250 169 36.0 6e-42 MKISIRHRYIAKIPALEVTTEEQKNEALPLIVYYHGWQSAKELSLTQARKLAHEGFRVIL PDAMNHGERKTGPISTIPSITFWSSIQYNLIEFPVIIHHFHKLGLIKENWIGVGGVSMGG ITTSALMTQHPEIQAAACLMGTPYPARYIQRVIQRAKEFAIFVPKDLPLLLSWVHQYDLS QTPERLQERPMLFWHGTEDEKIPYEDMADFEQLVSGKTYARNTQFITEIGERHLVKGETM DLVVDFFKEASKTLEK >gi|308151770|gb|GL476252.1| GENE 41 36983 - 37525 595 180 aa, chain + ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 25 177 22 176 179 117 42.0 1e-26 MEKNKLRKVGLTALEWLKQHPEIKQHKESSLYEQLFASQQWQQAQTIGMIRSLPLELSTQ PIFERAMQESKQVAVPRTFKGGKMHFYQVFPETVYDTSAFGVEEPPLTAAEITATAIDLL IVPGIVFNRAGYRIGFGGGFYDRYLEHFSGHSCSLVFSEQLHEQWQPEAFDQPIEQLFIQ >gi|308151770|gb|GL476252.1| GENE 42 37536 - 38246 758 236 aa, chain + ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 6 183 173 345 345 137 41.0 2e-32 MNYQTEMKLKRLKNQPFITYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNH EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG TPNSVSAGASTALFGLFGAFVILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMM GHVGGLIGGLLVATAFAVPNREEAFNKHERIMATLIFIFLVVICLLLGFKKYGLPV >gi|308151770|gb|GL476252.1| GENE 43 38264 - 38482 427 72 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 66 59.0 9e-12 METLYDVQQLFKQFGMYIYVGARIYDIELMMIELKKLYEGQLVDRDTYLQARHILQREHR IEESRGKQKGID >gi|308151770|gb|GL476252.1| GENE 44 38483 - 39454 1107 323 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 318 1 319 319 431 65 1e-120 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM KKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL GERWKGAGENNPDVIFITLGTGVGGGIVAAGELLHGVAGCAGEVGHVTVDPNGFDCTCGK RGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVV DRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKL AELGNEAGVIGAASLALQFSKEK >gi|308151770|gb|GL476252.1| GENE 45 39470 - 39868 619 132 aa, chain + ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 22 130 18 126 126 117 55.0 5e-27 MSILWVINGILLVIVLAMVFNELYLKIMVKRSAKMLTEEEFKETMRKAQVIDVREKDTFD AGHILGARSMPYSMLKTTIGSLRKDQPVYLYDQKKALSIRAANLLRKNGYTDIYILKGGY DGWTGKVKKRNS >gi|308151770|gb|GL476252.1| GENE 46 39990 - 40340 580 116 aa, chain + ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 4 115 116 115 53.0 1e-26 MIQIKRAYEAPTEQDGYRVLVDRIWPRGKSKESEKLDEWLKEVAPSTELRKWFNHEANKY PEFKQKYQEELKHEPTATAFKQLQTIVKNQPVVTLVYGAKDTVHNQAVVLKELLEK >gi|308151770|gb|GL476252.1| GENE 47 40354 - 42192 1582 612 aa, chain + ## HITS:1 COG:no KEGG:EF2785 NR:ns ## KEGG: EF2785 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 612 1 612 612 1226 99.0 0 MKIAIVGAGPRGLSAAERVIEWARKTEINVQLTLFDPYGPGGKIWRAEQPNYLLMNTVIS QVTLFTDESFSGEGPIVKGPTLYEWTKTEAAQYIQQQQPYNYLELLKECHRLGPNDHCSR AFYGMYQKWFYTYLATRCNEQTSLTFFKEPVTAVRAGEDNYYVYTQSIEFTADKVILALG HQENELTTVEQELAYYAKEHRLFYSSPKNAADALLALANIPAKQPVVLKGLGLAFFDYLS ALTIGRGGVFSRQNGRLRYEPSGREPIIIAGSGRGFPSHPRGINQKGYGETYQPVFLTET YLAECRKKGQVTGAEFFGYLKKEVEYVYYTCLIEEKYPHLSKEAFQQLFIQTKGAPESLA HFEKQDWFDWQALEHPETKKTTHESFRSFLLEYLKWDIQEAEKGNLSGPLTTALDSLKDL RDQIRFVLDEGLLTNDESQKWLWHWFTPLNTFLSVGPSVERTEELQALVELGLVTILGSE MRVEMKAGQFITYANLFPENRYNSHFLIEARIPKVNNEKSLNPLTRQLLADKLATLHQLA LSDGQIVKTGALLIVPATNQVITKDGQVATGLFSCGIPTEGIHWLTAAAARPGVDPWNMR DMDRIAATIFNS >gi|308151770|gb|GL476252.1| GENE 48 42355 - 42522 384 55 aa, chain - ## HITS:1 COG:no KEGG:EF2784 NR:ns ## KEGG: EF2784 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 72 100.0 5e-12 MKKFVSGMLVGTAITVAALAGVATTIKKTVIDPIEEKEDMIEENRKKAMRKRIAR Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:38:40 2011 Seq name: gi|308151769|gb|GL476253.1| Enterococcus faecalis TX4000 genomic scaffold Scfld20, whole genome shotgun sequence Length of sequence - 4783 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 20 - 79 9.5 1 1 Op 1 2/0.000 + CDS 178 - 663 551 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 769 - 1353 198 ## COG3328 Transposase and inactivated derivatives + Term 1597 - 1642 4.0 - Term 1447 - 1500 8.2 3 2 Tu 1 . - CDS 1534 - 3648 1418 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 3712 - 3771 9.1 - Term 3782 - 3827 8.3 4 3 Tu 1 . - CDS 4067 - 4303 78 ## COG1396 Predicted transcriptional regulators - Prom 4358 - 4417 4.0 + Prom 4181 - 4240 4.6 5 4 Tu 1 . + CDS 4404 - 4544 154 ## gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 Predicted protein(s) >gi|308151769|gb|GL476253.1| GENE 1 178 - 663 551 161 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 161 1 161 391 182 55.0 3e-46 MNELTTEIIATLVQKQDLDEVFRHHLEIAINQLLQTKLAAFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGIFENHTLPAYGRHSDSLETTVIQLYTKGITTAEIAEL IEKMYGTHYSKSTVSNMTKAVDEQVQAFQQRRLASQYASVF >gi|308151769|gb|GL476253.1| GENE 2 769 - 1353 198 194 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 193 198 390 391 168 44.0 7e-42 MTPTESTGTWTELLGTLIKQGVKDVLLFVADGLVSLDEGLSGHFPNAKRQRCLVHAGRNL MNKVRVKDRKAVINDFKQVHRATNRQEAELKLNDFANNWHQTYPKLIKNLLKMPNLLTFL DFPPAIRGSLYSTNLIENFNKHLKRNTNHKEQFPTENSLDRFLVSQFNVYNDKSMKRIHR GFKGLQDTLESSFI >gi|308151769|gb|GL476253.1| GENE 3 1534 - 3648 1418 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 701 149 809 815 550 43 1e-157 MANFYGNDPFFNNDMDDVFNQLFRRMDNQNSERARYLVNGQSLTPDEFAQYRATGKLPQN NKTIEVSKDGKQAVKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN AILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQ LVEEVKAAGNIILFFDEIHQILGTGATGGEDGGKGLADIIKPALSRGELSVIGATTQDEY RNTILKNAALARRFNDVVINEPTAADTLRILQGVKELYEKHHHVVLPDDVLKAAVDYSIQ YIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRLKKLEAAKEAAIKAEDFTKAADI KKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIERLKNLDKRLKSK VIGQDEAVEMVAKAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAI IRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEALSGDKQRDQSLTDKLAPFFRPE FLNRFNGIVEFSHLTKQDLSQIVELMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDDEIVISAA >gi|308151769|gb|GL476253.1| GENE 4 4067 - 4303 78 78 aa, chain - ## HITS:1 COG:SPy2126 KEGG:ns NR:ns ## COG: SPy2126 COG1396 # Protein_GI_number: 15675874 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 62 4 65 68 64 54.0 5e-11 MSLKAARANAVFTSKEAAKTADVHFQTLSKYEKDSSDIPFSLLNELSNLYQVPINNIFLG EEYDLIRIINNKRNEVMN >gi|308151769|gb|GL476253.1| GENE 5 4404 - 4544 154 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546323|ref|ZP_04435048.1| ## NR: gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9496_00280 [Enterococcus faecalis TX4000] # 1 46 1 46 46 84 100.0 3e-15 MGEIACGDPILAEEYREEIDENLPTGEVFYLKTKGNSMVPTIPSDS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:39:12 2011 Seq name: gi|308151768|gb|GL476254.1| Enterococcus faecalis TX4000 genomic scaffold Scfld21, whole genome shotgun sequence Length of sequence - 94558 bp Number of predicted genes - 92, with homology - 91 Number of transcription units - 46, operones - 25 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 49 - 83 5.2 1 1 Tu 1 . - CDS 102 - 971 1447 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 1088 - 1147 6.9 2 2 Tu 1 . - CDS 1174 - 2130 1045 ## COG1284 Uncharacterized conserved protein - Prom 2156 - 2215 4.9 + Prom 2281 - 2340 3.7 3 3 Tu 1 . + CDS 2363 - 2857 750 ## COG1666 Uncharacterized protein conserved in bacteria + Term 2863 - 2905 10.1 4 4 Op 1 . - CDS 2874 - 3557 740 ## EF1164 HD domain-containing protein 5 4 Op 2 . - CDS 3579 - 4544 1159 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 6 4 Op 3 . - CDS 4541 - 6922 1712 ## COG1199 Rad3-related DNA helicases - Prom 6943 - 7002 3.3 - Term 6966 - 7023 12.9 7 5 Op 1 . - CDS 7040 - 7558 501 ## EF1161 hypothetical protein 8 5 Op 2 10/0.000 - CDS 7576 - 8931 1467 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 9 5 Op 3 . - CDS 8950 - 9279 527 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 10 5 Op 4 . - CDS 9299 - 10252 1237 ## COG1446 Asparaginase - Prom 10296 - 10355 10.5 11 6 Op 1 . - CDS 10422 - 11720 1319 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 12 6 Op 2 . - CDS 11717 - 12481 791 ## COG2188 Transcriptional regulators - Prom 12512 - 12571 7.3 - Term 12591 - 12635 8.4 13 7 Op 1 6/0.000 - CDS 12655 - 13302 167 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase 14 7 Op 2 . - CDS 13317 - 14033 993 ## COG3935 Putative primosome component and related proteins 15 7 Op 3 1/0.250 - CDS 14066 - 15562 1772 ## COG2317 Zn-dependent carboxypeptidase 16 7 Op 4 . - CDS 15581 - 16744 1382 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 16896 - 16955 7.1 + Prom 17171 - 17230 2.2 17 8 Tu 1 . + CDS 17256 - 17435 146 ## - Term 17264 - 17300 -0.3 18 9 Op 1 6/0.000 - CDS 17458 - 17868 559 ## COG3599 Cell division initiation protein - Prom 17900 - 17959 2.2 19 9 Op 2 . - CDS 17962 - 18504 622 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 18596 - 18655 5.1 + Prom 18446 - 18505 3.7 20 10 Op 1 7/0.000 + CDS 18567 - 19184 390 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 21 10 Op 2 . + CDS 19226 - 21562 2450 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 21566 - 21605 11.1 - Term 21597 - 21638 7.3 22 11 Tu 1 . - CDS 21646 - 23256 1887 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 23427 - 23486 7.6 - Term 23515 - 23552 6.4 23 12 Op 1 . - CDS 23564 - 24181 918 ## COG3343 DNA-directed RNA polymerase, delta subunit - Term 24211 - 24256 1.1 24 12 Op 2 . - CDS 24258 - 24695 679 ## COG4506 Uncharacterized protein conserved in bacteria - Prom 24935 - 24994 7.5 + Prom 24874 - 24933 5.5 25 13 Op 1 1/0.250 + CDS 24991 - 25842 846 ## COG0095 Lipoate-protein ligase A 26 13 Op 2 3/0.083 + CDS 25839 - 27209 1419 ## COG1078 HD superfamily phosphohydrolases 27 13 Op 3 . + CDS 27228 - 28040 1138 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 28054 - 28113 16.3 - Term 28046 - 28094 11.0 28 14 Tu 1 . - CDS 28104 - 28550 402 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 28658 - 28717 5.7 + Prom 28603 - 28662 3.0 29 15 Tu 1 . + CDS 28693 - 29073 460 ## PROTEIN SUPPORTED gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 + Term 29122 - 29153 3.1 + Prom 29128 - 29187 5.2 30 16 Tu 1 . + CDS 29216 - 29938 699 ## COG2071 Predicted glutamine amidotransferases + Term 29939 - 29988 11.2 - Term 29923 - 29982 8.4 31 17 Op 1 . - CDS 29989 - 30813 1028 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 32 17 Op 2 . - CDS 30890 - 31252 189 ## EF1137 hypothetical protein - Prom 31294 - 31353 15.8 + Prom 31234 - 31293 5.1 33 18 Tu 1 . + CDS 31422 - 32342 1116 ## COG0668 Small-conductance mechanosensitive channel + Term 32347 - 32393 10.3 - Term 32335 - 32381 10.3 34 19 Op 1 6/0.000 - CDS 32387 - 33514 1186 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 33537 - 33578 5.0 35 19 Op 2 . - CDS 33593 - 34294 986 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase - Prom 34314 - 34373 3.2 36 19 Op 3 . - CDS 34375 - 34863 685 ## COG0517 FOG: CBS domain - Prom 35012 - 35071 9.6 - Term 35011 - 35062 13.1 37 20 Op 1 8/0.000 - CDS 35120 - 35830 716 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 38 20 Op 2 9/0.000 - CDS 35820 - 36680 668 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 39 20 Op 3 . - CDS 36685 - 37323 764 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 40 20 Op 4 . - CDS 37337 - 37636 467 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 41 20 Op 5 2/0.083 - CDS 37651 - 39138 1514 ## COG3037 Uncharacterized protein conserved in bacteria 42 20 Op 6 . - CDS 39151 - 39609 579 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 43 20 Op 7 . - CDS 39627 - 40694 1094 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 40734 - 40793 5.4 + Prom 40785 - 40844 6.3 44 21 Tu 1 . + CDS 40888 - 41652 663 ## COG1349 Transcriptional regulators of sugar metabolism + Term 41801 - 41838 -0.7 - Term 41646 - 41700 16.3 45 22 Op 1 . - CDS 41746 - 42258 515 ## COG0622 Predicted phosphoesterase 46 22 Op 2 2/0.083 - CDS 42271 - 43626 478 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 47 22 Op 3 . - CDS 43619 - 44446 776 ## COG0796 Glutamate racemase - Prom 44469 - 44528 4.2 + Prom 44543 - 44602 8.9 48 23 Op 1 16/0.000 + CDS 44711 - 45442 632 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 49 23 Op 2 31/0.000 + CDS 45477 - 46304 1104 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 50 23 Op 3 17/0.000 + CDS 46350 - 47063 706 ## COG0765 ABC-type amino acid transport system, permease component 51 23 Op 4 . + CDS 47075 - 47740 682 ## COG0765 ABC-type amino acid transport system, permease component + Term 47795 - 47848 8.4 - Term 47877 - 47922 14.1 52 24 Op 1 40/0.000 - CDS 47938 - 50361 3290 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 53 24 Op 2 1/0.250 - CDS 50369 - 51415 1415 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 51435 - 51494 7.9 - Term 51442 - 51489 12.2 54 25 Op 1 . - CDS 51734 - 52078 471 ## COG1733 Predicted transcriptional regulators 55 25 Op 2 8/0.000 - CDS 52148 - 55942 4101 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 56 25 Op 3 1/0.250 - CDS 55935 - 59525 3537 ## COG3857 ATP-dependent nuclease, subunit B - Prom 59551 - 59610 5.2 - Term 59560 - 59615 13.5 57 26 Tu 1 . - CDS 59636 - 60184 695 ## COG0681 Signal peptidase I - Prom 60273 - 60332 6.2 - Term 60343 - 60397 10.7 58 27 Op 1 13/0.000 - CDS 60405 - 61124 922 ## COG1556 Uncharacterized conserved protein 59 27 Op 2 17/0.000 - CDS 61117 - 62589 1392 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 60 27 Op 3 . - CDS 62602 - 63363 814 ## COG0247 Fe-S oxidoreductase - Prom 63523 - 63582 9.9 + Prom 63459 - 63518 10.1 61 28 Op 1 . + CDS 63715 - 64020 212 ## EF1105 hypothetical protein + Term 64024 - 64067 12.1 + Prom 64107 - 64166 9.5 62 28 Op 2 . + CDS 64201 - 64386 251 ## EF1104 hypothetical protein + Term 64387 - 64445 14.3 + Prom 64391 - 64450 12.0 63 29 Tu 1 . + CDS 64557 - 65909 1336 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 65926 - 65964 3.0 + Prom 65939 - 65998 7.7 64 30 Tu 1 . + CDS 66021 - 66422 524 ## EF1102 hypothetical protein + Term 66430 - 66472 -0.1 - Term 66317 - 66358 -0.8 65 31 Op 1 . - CDS 66419 - 67153 604 ## COG0500 SAM-dependent methyltransferases 66 31 Op 2 . - CDS 67223 - 68818 1485 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 68844 - 68903 4.6 - Term 68890 - 68939 11.6 67 32 Tu 1 . - CDS 68943 - 70685 1607 ## EF1099 collagen adhesin protein - Prom 70835 - 70894 4.9 + Prom 70940 - 70999 8.3 68 33 Tu 1 . + CDS 71020 - 71325 342 ## EF1098 hypothetical protein + Term 71329 - 71377 10.1 - Term 71896 - 71928 0.7 69 34 Tu 1 . - CDS 72135 - 72647 573 ## EF1097 hypothetical protein - Term 72917 - 72956 5.2 70 35 Tu 1 . - CDS 73007 - 73210 390 ## COG2155 Uncharacterized conserved protein - Prom 73235 - 73294 2.6 + Prom 73293 - 73352 8.5 71 36 Tu 1 . + CDS 73405 - 73698 227 ## EF1095 hypothetical protein + Term 73856 - 73894 1.5 72 37 Tu 1 . - CDS 73765 - 74619 948 ## COG3764 Sortase (surface protein transpeptidase) - Term 74637 - 74673 2.5 73 38 Op 1 . - CDS 74713 - 76596 2381 ## EF1093 cell wall surface anchor family protein 74 38 Op 2 . - CDS 76593 - 78023 1498 ## EF1092 cell wall surface anchor family protein 75 38 Op 3 . - CDS 78027 - 81344 2875 ## COG4932 Predicted outer membrane protein - Prom 81498 - 81557 8.9 + Prom 81474 - 81533 5.0 76 39 Tu 1 . + CDS 81672 - 83093 1309 ## EF1090 hypothetical protein + Term 83203 - 83257 17.3 - Term 83190 - 83243 17.1 77 40 Op 1 . - CDS 83279 - 83674 341 ## EF1089 hypothetical protein 78 40 Op 2 . - CDS 83745 - 84458 634 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis - Prom 84500 - 84559 7.0 - Term 84540 - 84588 8.2 79 41 Tu 1 . - CDS 84597 - 85043 369 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 85223 - 85282 6.9 80 42 Op 1 . - CDS 85413 - 85655 240 ## EF1085 hypothetical protein 81 42 Op 2 . - CDS 85726 - 86157 545 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 82 42 Op 3 . - CDS 86210 - 86515 372 ## EF1083 hypothetical protein 83 42 Op 4 . - CDS 86533 - 86715 312 ## EF1082 hypothetical protein - Prom 86735 - 86794 2.3 84 43 Op 1 . - CDS 86802 - 87191 547 ## EF1081 hypothetical protein 85 43 Op 2 . - CDS 87196 - 88512 1238 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 88533 - 88592 7.9 86 44 Op 1 6/0.000 - CDS 88663 - 89817 1357 ## COG0477 Permeases of the major facilitator superfamily - Prom 89945 - 90004 10.1 - Term 89829 - 89857 -0.9 87 44 Op 2 . - CDS 90010 - 90450 524 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 88 44 Op 3 . - CDS 90499 - 91005 530 ## EF1075 acetyltransferase - Term 91033 - 91066 1.4 89 45 Op 1 . - CDS 91078 - 91341 366 ## EF1074 hypothetical protein 90 45 Op 2 . - CDS 91405 - 91899 460 ## EF1073 hypothetical protein - Term 91932 - 91979 8.2 91 46 Op 1 1/0.250 - CDS 91980 - 92984 925 ## COG1609 Transcriptional regulators 92 46 Op 2 . - CDS 92991 - 94484 1452 ## COG4468 Galactose-1-phosphate uridyltransferase Predicted protein(s) >gi|308151768|gb|GL476254.1| GENE 1 102 - 971 1447 289 aa, chain - ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 289 1 293 293 388 71.0 1e-108 MPVVSGAEFLKAARKGGYAVGGYNTNNLEWTQAILEAAEAKKAPVLIQTSMGAAKYMGGY KVAKDMITNLVDSMNITVPVAIHLDHGDYEAALECIEVGYTSIMFDGSHLPFEENLKLAK DVVEKAHAKGISVECEVGSIGGEEDGIIGTGELADIEECKQMVATGIDYLACGIGNIHGQ YPENWKGLAFDHLQAIAEAVGSDVPLVLHGGSGIPQEQIEKAISMGISKVNVNTEFQLSF AKATREYIEAGKDLEGKGFDPRKLLAPGKAAIIKDAEEHIDWFGSANKA >gi|308151768|gb|GL476254.1| GENE 2 1174 - 2130 1045 318 aa, chain - ## HITS:1 COG:lin2365 KEGG:ns NR:ns ## COG: lin2365 COG1284 # Protein_GI_number: 16801428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 293 9 290 300 249 46.0 4e-66 MSRLVSTYQRNESIKKIAVMAITALTSAVGLNFFLIPAKVFSAGMNGIAQIIATLLYTNL GIHINTGIFILFLNIPVFILGFVKLGKQSTILSFINVIGISVVTMFVPIVTVTTNPLMNA IMGGVLVGVGAGLSLKMGFNTGGMDIISLILSKTTGKTVGNFMFLLNGIIVLLAGFVFNW ESALYTIISIYCLSQVVDMIHTSHQKVTAMIVTTRPEAVALEVSQQIARGMTLLPSIGGY SGAEGRMIMMVITRYELYDLEQAVYSIDENAFVNILPTQSVLGRFANEDEQRIFHSTGTF PELQSYKVKRYPPKKKLK >gi|308151768|gb|GL476254.1| GENE 3 2363 - 2857 750 164 aa, chain + ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 164 2 163 163 171 58.0 4e-43 MAAKEASFDVVSEVNMEEVKNAIQIALKELKNRFDFKGSIADIKLENDKLVVVAEDDYKV EQVKDILFGKLVKRNVPIKNIHFSESEKALGGTARQYGDLISGIDKENAKKINTAIKNSG IKVKSQIQEDKIRVTGKSRDDLQKVMALLRELDLPMALEFNNYR >gi|308151768|gb|GL476254.1| GENE 4 2874 - 3557 740 227 aa, chain - ## HITS:1 COG:no KEGG:EF1164 NR:ns ## KEGG: EF1164 # Name: not_defined # Def: HD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 417 98.0 1e-115 MKLFERIHQDTEIRQIYDAIGQMEDEEAGWAYHNWLHVTNVVAMTEMILKQLAVSEEYLE AAKIAALLHDVGALQGKAGHALRGKQFAEAYFRKQKICLPYQEEILSSIENHSNGFDSEE LMTLALIISDKLDITTSRVAKAGYFVPGMRQLQFLKKIEIMLSEQEVCVSFTAEEELDLE ELNAFYFMPKVFKAIAAFSEKIQRRPIVLLNNQEWPVPKPKNPSTVH >gi|308151768|gb|GL476254.1| GENE 5 3579 - 4544 1159 321 aa, chain - ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 320 2 322 323 358 58.0 6e-99 MKTILVLHTGGTISMSKVAGGSVAPNEKNPLMEQEALFSGKVHLVVEDIFNIPSPHMTLE RMFQLKERIQKAYSEPIDGVVITHGTDTLEETAYFLDITLEKKIPIVLTGAMRSSNEIGS DGLYNFISAIWTACSDESYDKGVLVVMNDEIHTARYVTKTHTTNVATFRTPTFGPIGTIA KERAFFAKEVLPQEVCDVSSVKGNVHVVKAYAGMGERMFELLNTPETDGLVIEALGAGNL PPETLPALQKMLDNGIPVVLVSRCSNGIAEDIYDYAGGGVGLKKMGVVFARGLNGPKARI RLIVGLNSEKNPTELKEFLEQ >gi|308151768|gb|GL476254.1| GENE 6 4541 - 6922 1712 793 aa, chain - ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 6 785 5 779 779 760 46.0 0 MKSTRKIAVRQVVEFILRRGSINSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEV PLNGHNYCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQVMCYGHMYCQ QEQLSEITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNK SLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEG ERIFYLTAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEHCPFADGY YDRLNEGLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTV YLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESVQLKRAC QKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQIHRLTEVIAEWLPENQHIEELASILS FYFDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASL TPLNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLS ETKTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETF IGFCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIP GMNKVLQAAGRVIRDARDKGFVLLLDERFELPSVQRFFPPHWLAHRKANTNEQLIQQVKQ FWLKNKENKGGNK >gi|308151768|gb|GL476254.1| GENE 7 7040 - 7558 501 172 aa, chain - ## HITS:1 COG:no KEGG:EF1161 NR:ns ## KEGG: EF1161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 324 100.0 1e-87 MKKILLVLNHSLAGFGSDEQAQLKPSGKKAPLGPGVTLLPFLQKQGAEIVATLYCGDQYY LENEEEVAKKFIGFAKKFHADAVLCGPAMHYPNFGEMAARLACKFNAAGIPAIAAMAEEN PAVSHYYQQVPIVKMPKKGGIGLNNSFKQMAQLVVAKANGKETKQLEETSCF >gi|308151768|gb|GL476254.1| GENE 8 7576 - 8931 1467 451 aa, chain - ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 430 1 433 452 342 40.0 1e-93 MQKFLDWLERVLTPLAKVIGENKYLVAIRDGFLLSTPLLIVGSVFLLIANFPLPQWDTWM SHLLGKDWATMMSVPASASFDVMTILAVVGIAYSLGKQFNVDAMQAGIIALVSFFIVTPY QTLFTPENSSKVYEVTSLPLKWMGSSGLFLGMIVALIATRLFVAIVRKGWTIKMPEGVPP TVVKSFEALIPSFLVVTLMFLVNWLAALTPYGNLQDVIFEFLQTPLLSLGNTLGAMSIAY LFLHFFWFFGINGGSVVGAVFNPVLRALSVENLQAFKDGHEIPNIITGQFQDMFATFGGA GSTLSLIIVMVLFCKSQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSGWQGSILQALLLVLGMFIYYPFIR VMDDQYLREEWKAQEEESEEIDFDSFDFDDL >gi|308151768|gb|GL476254.1| GENE 9 8950 - 9279 527 109 aa, chain - ## HITS:1 COG:CAC0384 KEGG:ns NR:ns ## COG: CAC0384 COG1440 # Protein_GI_number: 15893675 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Clostridium acetobutylicum # 5 104 3 100 102 79 46.0 1e-15 MSKKQIYLFCDAGMSTSIMVNKMMEVVEKHQMPLMITAFPIARAQEVVEAEKPVAILLGP QVRFLLEKTKEQFAPQGIPVAAIAPEIYGMMDGEKALKEALRLIKQNKK >gi|308151768|gb|GL476254.1| GENE 10 9299 - 10252 1237 317 aa, chain - ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 4 281 20 313 327 142 33.0 9e-34 MTWGAIATWRMAHDGLLKATEELQQGGAAGTAVEQLIKEVEDYPFYKSVGYGGLPNEEGI LEMDAAYMDGDTFAIGAVAGITDVKNPISVAKALSKEKFNSFRVGAGATKYSMLHGFERK NMLTERANQWWQKRLKEIQENQLNPYDGHDTVGAITLDQTGSMAAGTSSSGLFMKKAGRV GDSPLSGSGFYVDSEIGGAAATGLGEDLMKGCLSYEIVRLMGEGRSPQQACDQAVYAFHE KLTQRYGKAGAFSLVAMNKQGDWGVATNVEFTFTVGTDMQQPEIYIANPGKNHTTEIQPI SQEWLAAYEKRIKAPIE >gi|308151768|gb|GL476254.1| GENE 11 10422 - 11720 1319 432 aa, chain - ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 2 429 3 463 465 258 34.0 2e-68 MKIKEEIAAQKDLFYEDLNKIMAIRSVKGSPKKEAPFGEGPKRALEETLKLAERYGFQTG IVNDAVGYAQWGTAEEYLGIIGHLDVVPEGSGWSVPPFQLTKKNQRLYGRGILDNKGPIL ACLYGMKLLKELGYQPKKTIRLMFGTDEESGSGDIPLYLEKENAPVSGFTPDCKYPVVYG ERGIVNYEITTTIPDDSSEQIGQIMGDQAKDHVPDQLSVVIAGKTTAITGKRAPSNAPEL GKNAITLLAQKISEEQLVKGNLLQYFDWLTASFHEKHYGEGVALDFKDQDSGQLILTPYA LEKRGQQLVLSLAVRYPVSITENEVTTQLTKALFPESEVTVIRRLPSTLFPKDERNVQKL TKVYEQITGLDGTPVTTTGATYARFMPNIVAFGPSFPGQKGIAHNQDEYMDEKDLLLNLE IYMQAMIALTEA >gi|308151768|gb|GL476254.1| GENE 12 11717 - 12481 791 254 aa, chain - ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 7 229 26 251 261 122 31.0 7e-28 MTENAPKFKQISAEIEKKIRDGLYVSAQKLPSEYDLAKEYNCSRLTIRKAIDDLIRKNIL VKRHGKGSYVMSQAKIQSGRAGLQGFTEAAKAYGKKSQTEVISFEEVVHPDEKIREALQV GKNEAIYELIRRRMLDGEPMTVEKIYLPQAYVQGHTKQDFEGSLFCLIEKNVEIAYSHQE IEAILVEAEISELLNVPVGQPLLQVHSITYALDATPILYDVSLYRADRYTFKNTLTRYSP SENNQVELGGSWNE >gi|308151768|gb|GL476254.1| GENE 13 12655 - 13302 167 215 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 26 205 31 213 378 68 26 9e-11 MLSQEKTMEAIEIMYEMFPNAECELKHKNPFELLIAVILSAQATDVSVNKATPGLFAAFP TPEALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNGEVPQTRDELVSLPGVGR KTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHT MIFFGRYHCLARAPKCEACPLLYMCQEGKERMKGK >gi|308151768|gb|GL476254.1| GENE 14 13317 - 14033 993 238 aa, chain - ## HITS:1 COG:BS_dnaD KEGG:ns NR:ns ## COG: BS_dnaD COG3935 # Protein_GI_number: 16079292 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus subtilis # 9 232 11 230 232 124 35.0 2e-28 MLSIREYLEAGETTISNLLFDHYQKIGLKDDEFLFLLQLFRSQNAGDLFPDLMAIAETMG KTPDTIYKLLNQLVSRGFIRIETQQNQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVVANH EDEIKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYSLKYID RILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQESLPKVTLHNWLNPEDSE >gi|308151768|gb|GL476254.1| GENE 15 14066 - 15562 1772 498 aa, chain - ## HITS:1 COG:lin1999 KEGG:ns NR:ns ## COG: lin1999 COG2317 # Protein_GI_number: 16801065 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Listeria innocua # 3 496 6 499 502 499 49.0 1e-141 MKEAVFLQEVKEIQLLKNALTLLDWDSSTGMPEKSSPFRGEVEGYLTGLYFERSIGPVIQ EALAYFETRPEELSELGKLVFEKVKEEYALNKNVPAERMQEYVKVLNQAHTDWLKARAAQ DFGLLEETLTKVVAFQKEFIPYWQKEEKTPYDVLLNQFEPGMTVEKLDQVFDQVKQGIQE IRTVLAEKGTPPRTDFLSRKMTKEQQRRFVIGVVEQLGYDFSKGRLDDTVHPFMTALNRN DARITTRWEENNFSMATFGVIHEAGHGMYEQNFDPKFDFTPLSEGASMGIHESQSLFNEI IIGSNRAFWQKQYPFFQECAEGTFDDIAFEDFYASLKETKASLIRIDSDSLTYPLHIIIR YEIEKMLFNGSLEVADLPKVWNEKYQEYLGVSPENDLEGVLQDVHWSGGSFGYFPSYALG YMYAAQLFHAMKQELSVDEILASEDYSDIRKWLTQHIHQYGASRKPNQLIYDATGEELNP GYLIDYMKAIYFDVYQVQ >gi|308151768|gb|GL476254.1| GENE 16 15581 - 16744 1382 387 aa, chain - ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 5 387 2 382 382 533 68.0 1e-151 MTKEKTFKLVATAASGLEALVGKELRDLGIPCEVENGRAVFEGTVETIATANLWLRTADR IKIVVGEFNAYSFDELFEKVKALPWEDYLPLDAEFPVAGKSIKSKLYSVPDCQAITKKAI VNRLREVYHRPATVPLTETGALFKLEVALLKDKVTLTLDTTGPSLFKRGYRIEKGGAPLK ENMAAALVMLTNWRKDRPFYDPVCGSGTICIEAALIGHNIAPGFNRSFTCETWDWVDPAI FEKVRNEAEAKADYDVELDICGSDVDGRMIEVARANAEEVGLGDSITFKQLALKDFTTEK EYGVMVANPPYGERLGEEESVRRLYKEMGHVFRPLTTWSKYILTSDLAFEEYYGAKATKK RKLYNGALRTDLFQYWGTRPPRKPRED >gi|308151768|gb|GL476254.1| GENE 17 17256 - 17435 146 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISLSTNTTSISACASMDFPQLAKANRDHPKITNLFRRTAKIYTLQQVSAILTNAFCSL >gi|308151768|gb|GL476254.1| GENE 18 17458 - 17868 559 136 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 9 106 13 111 113 89 54.0 2e-18 MANLVYSPKDILQKEFKTKMMNGYDPIEVDEFLDNVIKDYEAYNKELLSLQEENSRLMAK LDQLSKAQPTPRVAQEVPKSAAVTNFDILKRLSNLEREVFGKKLDETPSTPVTPSAPSMT AEPANHDVDNAQTRQF >gi|308151768|gb|GL476254.1| GENE 19 17962 - 18504 622 180 aa, chain - ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 175 1 172 189 153 43.0 2e-37 MEMIKTLYVTGYRSFELGIFQGKDPKITVIKNVLKKELASYIETGVEWILISGNLGVELW TAEVVGELKTEYPEVQLGLLYPFKDFGNNWNEQNRELLTKAESLADYINSVSHQPYQSPA QLKMHTKFLLEHSGGSLLIYDKEYPGKTEYFLKDAQHFSEREPYDIRLITMDDLQNSVID >gi|308151768|gb|GL476254.1| GENE 20 18567 - 19184 390 205 aa, chain + ## HITS:1 COG:SPy1648 KEGG:ns NR:ns ## COG: SPy1648 COG3331 # Protein_GI_number: 15675520 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Streptococcus pyogenes M1 GAS # 9 200 2 191 199 210 55.0 2e-54 MTFHYPNGIPYNHHEAQSPKKQVKKKRPVEFGNRGMDFEEAINQSNQYYLLNKQAVVHKK PTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFH QHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKE GIELSFGIAPRIPYLDAVEQYIQTH >gi|308151768|gb|GL476254.1| GENE 21 19226 - 21562 2450 778 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 41 697 17 662 719 624 53.0 1e-178 MPTANSGSRAARHASNTSSKSSYKKKTQPPKKKKRVVLKIFLGLLIAGMVAFLAGVGLFW FYARQAPKLEDDKLNATVSSKLYDINNEIFEDLGAEKRELIQPNDVPQLLKDAIVSVEDR RFYKHIGVDPIRIIGSALSNVKNGGLQGGSTLTQQLIKLSYFSTKESDQTLKRKAQEAWM AVRLEREKSKEEILTYYINKVYMANGFYGMETAAENYYGKHLSELDLPQTALLAGMPQAP NSYDPYTKPDTAKERRDVVLYTMYDNKKISKAEYEKAKATPIDEGLVPLKASDDNRKVVD NYVKEVINEVKAKTGKNVYTDGLDIYTNLDMNAQKQLYDIVNSDQYVAFPDDKMQVASTV IDVASGQVRAQIGGRHIPDDVQLGNNLAVNTQRDVGSTVKPIMDYGPAIENLNYSTGRLM VDKPTKYPGTDIDVFNSDLTYQGVITMRRAIMGSRNTTAVQTFDEVGKENIMPFIKGLGI DYKNLEASNAISSNTSDVDGDKYGISSLKLAAAYAAFANNGIYNKPYYVNKVVFNDGTSV DYQPDGKRAMKDSTAYMMTDMLKDVLNGGTGFNGAIPGLIQAAKTGTSNYTDEDLARMGT TEKGIAPDSTFVGYTTHYAVSVWTGYNDRNTPIYQEYYGIASDVYREIMSYLSQNVSNDD WVQPDSVVRVGNELYVKDAYEVPNVQVLPSTTSSAPQPESSSTVESSSTKEAESSSSSSS ESAPSSSEAPPSTEQPASSSSAEQPATSEQPPEPSSSSSQEPPQPPESSSKPDENKAA >gi|308151768|gb|GL476254.1| GENE 22 21646 - 23256 1887 536 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 532 3 533 535 878 79.0 0 MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITN EIKEKIMRAAKMTDADVIITEVGGTVGDIESLPFLEALRQMKADMGSDNVMYIHTTLIPY LKAAGEMKTKPTQHSVKELRSLGIQPNILVVRTELPVSQNTKNKLAQFCDVNPEAVIESR DVETLYSIPLALQAQNMDQIVCDHLKLDAPAADMTEWRALEEKVLNLKKKTKIALVGKYV ELPDAYISVVEALKHAGFDFDSDIEIDWVDSQELTAENVAERIGSADGILVPGGFGDRGI EGKIEAIRFARENDVPFLGICLGMQMACVEFGRNVVGLEDAGSAETNPDVTNNIIDLMAD QENIENLGGTLRLGLYPCKLKKGTKTAAAYGNEDVVQERHRHRYEFNNKYRQLFEENGLV FSGVSPDNRLVEIVEIPEKQFFVACQFHPELISRPNRPQRLIKGFVGAALANKESK >gi|308151768|gb|GL476254.1| GENE 23 23564 - 24181 918 205 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 171 1 170 191 116 55.0 3e-26 MEINVFEGLNKKELSMIEVAHAILEQHADVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYT DLNIDGSFISLGDNRWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPND EDVIDYNDDDPEDAELTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQI EEDLTIIDDDDVEDEDDFDDEYSEE >gi|308151768|gb|GL476254.1| GENE 24 24258 - 24695 679 145 aa, chain - ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 9 143 9 137 142 58 33.0 4e-09 MDLSTGVPVSIQLKTIVQQGNEQKDFFFDLEGQLVKMGDTLYIRYKEELLEDTEPTPVTI KIEPDGHVQLIRAGELRMRLRFGYQEKLDTSYRTPYGLLQISTFTHNLRVSLKDQPMSGK ILVDYDLYSQTERIGEYHLELEFTA >gi|308151768|gb|GL476254.1| GENE 25 24991 - 25842 846 283 aa, chain + ## HITS:1 COG:SPy1220 KEGG:ns NR:ns ## COG: SPy1220 COG0095 # Protein_GI_number: 15675184 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 28 240 33 248 283 191 45.0 1e-48 MSTTFPLHTESFMLLDSGCLTNSDYFLPFALTDVLTTFSGMQHQPIIHFWQLDQAMILGM KDTRVPHLKEGIASLQENDYSVVVRNAGGLGGMADSGILNVSLILPNNSEHKLSIDAAYE LMWAWLRQSFPEKEIDAFEITTSYCPGTYDLSIGGQKFAGIAQRRVKDGIAVMIYISVNG NQLARGEVVRDFYLAGLQEQFGENGYPPVDPAVMANLETLIETPLTIDAVKTRLIEALPQ QFEKSIDPNLTEPIITSEWFQTNLTVQLEKMAQRNALIKGEIV >gi|308151768|gb|GL476254.1| GENE 26 25839 - 27209 1419 456 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 13 449 3 426 434 538 62.0 1e-152 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAE HSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHT FEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQI DADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGV LSTYFTQWMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKY YTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATVSPLVAALAGQSQGDERFYF PKEMLDQGNKKHYDLFDETYREFSSYIHNGALVLKK >gi|308151768|gb|GL476254.1| GENE 27 27228 - 28040 1138 270 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 269 1 268 268 277 53.0 1e-74 MSIKLVAIDIDGTLLNSQHKITPRVKEALQKANEQGVRIVLCTGRPLPGVKEQLDELALY GENDFVITYNGSLVQATKDNTIISRYTLSYEDFLEIEMYSRKVGAHLHTIDDSAIYTANR NIGKYTIHEASLVNMPLKYRTVDEMTPEMNIIKMMMIDEPEVLDPAIAKLPLHFTEKYTT VKSTPFYYEIMNKNASKGNALAKLADHLGLNKDEVMAIGDNENDLSMIDYAGIGVAMGNA TENVKTIADVHTTSNDEDGVAQIIEKMVLI >gi|308151768|gb|GL476254.1| GENE 28 28104 - 28550 402 148 aa, chain - ## HITS:1 COG:L99869 KEGG:ns NR:ns ## COG: L99869 COG0494 # Protein_GI_number: 15674214 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 4 144 5 144 146 160 56.0 7e-40 MKTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAI HREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLH WVAPEEAVRLLKRGSHRWAVEKWLAASS >gi|308151768|gb|GL476254.1| GENE 29 28693 - 29073 460 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 [Streptococcus pneumoniae SP3-BS71] # 1 126 1 126 126 181 65 9e-45 LTMKMAHTCVRVKDLEASLDFYQKAFNFEESRRRDFPENKFTLVYLTLPGDDYELELTYN YDHEAYDLGNGYGHIAISTDDLEGLHEKHQAAGLTVTDLKGLPGTAPSYYFVVDPDGYKI EVIRER >gi|308151768|gb|GL476254.1| GENE 30 29216 - 29938 699 240 aa, chain + ## HITS:1 COG:SP1089 KEGG:ns NR:ns ## COG: SP1089 COG2071 # Protein_GI_number: 15900957 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 240 1 229 229 210 46.0 2e-54 MTKKIIGIAGNQLLQAAEVFHGNQVTYTPQGFVSAVQAAGGVPLVLPIGPKELAATYIQQ IDKLLLAGGQDVAPEFYGQEPHIKLEETNRDRDEFELALIEEALKQNKPIFAVCRGMQLV NVALGGTLYQDLSMYPQWSVKHGQQPTQPIFATHRIDVEPDSQLSNIYGTTGQVNSYHHQ ALHTLGKDLRVTAWSSDGLAEAVESTNEQQPLLAVQWHPELMYARDAKSQALFNYFVQKL >gi|308151768|gb|GL476254.1| GENE 31 29989 - 30813 1028 274 aa, chain - ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 274 1 274 274 370 63.0 1e-102 MTLDKTKKLANGNEMPRLGLGVWRVEDGSEATNSVKWALKAGYRLIDTAAVYKNEVGVGE GIRQSGIPREEIFVTTKLWNEDQGYENAIKAFDKSLEKLGLDYVDLYLIHWPVAGKYKES WKALEEIYASGRAKAIGVSNFHQHHLEDLLTEANVVPMVDQIELHPTLTQEPLRKYLAEN KIAVEAWSPLGQGNLLSEPVLVKIGEKYGKSAAQVIIRWHLQNDIIVIPKSVHEKRIQEN FAVFDFELTPEEITAINQLNKDHRFGADPDNFDF >gi|308151768|gb|GL476254.1| GENE 32 30890 - 31252 189 120 aa, chain - ## HITS:1 COG:no KEGG:EF1137 NR:ns ## KEGG: EF1137 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 30 120 1 91 91 160 98.0 1e-38 MKVSIEWAKNDLLSKLPVTIFIDERCATRLTADKRRTFIFHNPVALRLGSRFFSSQIIEI AESCTLKVSFNWSCVYLFCIWLLAVKLWIGSVSGRTIVVVALIGVLTYWRRYLLKIKKMT >gi|308151768|gb|GL476254.1| GENE 33 31422 - 32342 1116 306 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 45 299 19 270 281 198 42.0 9e-51 MLILGLASTETVDSSAPDLAEATVKKVSALQRFWNNINWDAIVATLIEKSLSILFLIFLF FIIQRIGKYLIDRTYANYSKKQHFSESRLKTLHTLIINAFQYTLFFFFIYSLLTIVGVPV GSLLAGAGIAGVAIGLGAQGFMNDLITGFFIILEQQMDVGDYIRLLALNIEGTVTSVGLR TTQIKAVDGTVHFIPNRNITTISNLSRANMQVLIDVRINPEEGYEKICEVITEVNETLKE KYIESIQTGPDIFGMVDLGNGNFAVRTTMYVLNGKQFAVKEEFLAQYIKALTEAGFTIPN TPIIAK >gi|308151768|gb|GL476254.1| GENE 34 32387 - 33514 1186 375 aa, chain - ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 5 371 3 371 376 455 59.0 1e-128 MEQEELIAIRRQLHQIPEIGLEEKETQAFLLNEINKMKQPYLQVRTWQTGILVFIEGKNP QKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQPDNNFL FLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFAATCEVNI TLKGKGGHAAFPHQANDMVLAATNLIQQAQTIVSRNVDPVVGAVVTFGTFHAGTACNVIA EEATLSGTIRTLTAETNEQTQRRIREISEGIAQSFQCEVTVHLDQKGYLPVVNEPACTTN LIEYMSKQATVQFQQAPVAMTGEDFGYLLSKVPGTMFWLGVASPYSLHSAKFEPNEEALL FGVEAVSGFLKSLDN >gi|308151768|gb|GL476254.1| GENE 35 33593 - 34294 986 233 aa, chain - ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 233 4 236 236 287 69.0 1e-77 MDAYEIIQYIGDAKKQTPVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEA NKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAV VGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEG VRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDDKTKSKTEILEELRKL >gi|308151768|gb|GL476254.1| GENE 36 34375 - 34863 685 162 aa, chain - ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 149 1 147 153 108 38.0 5e-24 MIGTAVKELLLEKQETFLVPAENVANVMCLNPLSHAALVLSQVRYSKIPVLDKGDRFVGL IGLTDVVDKMFDLTSVDFEKLNEFTVADVMEVNVPVIGESWDLEEVLHLLVDASFLPVVD DNQRFKGIITRKEILKAVNHMAHELEKHHLVLPKSEEEMKVI >gi|308151768|gb|GL476254.1| GENE 37 35120 - 35830 716 236 aa, chain - ## HITS:1 COG:SPy0179 KEGG:ns NR:ns ## COG: SPy0179 COG0235 # Protein_GI_number: 15674384 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Streptococcus pyogenes M1 GAS # 7 236 5 233 234 293 60.0 2e-79 MNNKAIIQAMKQRVYEANLALPKLGLVKLTWGNVSEINRSLGIIVIKPSGVKYQEMSKEQ MVVTDLNGQLLETNALKPSSDLPTHLYLYQKMPEIGAIAHTHSLNSVTWAQAGRALPPCG TTHADAFYGAVPCTRALSESEIKENYEKETGKVIVETFHEQELDPLAIPGVLVYGHGPFT WGMTPEKAVENSLILDEICSMARLTEIINPAVEPIDHFLLDKHYLRKHGISAYYGQ >gi|308151768|gb|GL476254.1| GENE 38 35820 - 36680 668 286 aa, chain - ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 3 283 16 295 297 298 53.0 6e-81 MARIGLYEKALPQNLTWTERLTWAKKLGFDFLEMSIDESDERLARLAWTPSQLQELSQLM VKEDFFIHSLCLSGHRRFPLGSLNKETREKGREILSQAIHLVHQLNIRVIQIAGYDVFYE EKTAETREFFLQGLKKGVEEAAQYGVILAVEIMDDPFMNSIQKFLEIKEQIPSPFLHVYP DLGNLSAWPENNPAVELEKGIAEIAAIHLKDTFAVTDTFEGKFREVTFGEGCVDFTGLLK TLKRLNYSGPFLIEMWNETDLNFQEKIQAAQQYLYPKLAEVGYYEQ >gi|308151768|gb|GL476254.1| GENE 39 36685 - 37323 764 212 aa, chain - ## HITS:1 COG:SP2035 KEGG:ns NR:ns ## COG: SP2035 COG0269 # Protein_GI_number: 15901856 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 211 6 220 221 256 60.0 2e-68 MKRPNLQIALDHNRLEDALADCMKVGEIVDIIEVGTILCLQEGQKAIRCLKRMFPNKTIV ADTKCADAGGTVARNVAQAGADFMTVICCATLPTMAAAQKEVRELQVELYGDWTMQQARQ WRELGINQVIYHQSRDALLAGGSWGEKDLNKVQELIDLGFEVSVTGGLTVETLELFQTMA VATFIAGRGITESKNPEQAAKDFQKKIDQIWK >gi|308151768|gb|GL476254.1| GENE 40 37337 - 37636 467 99 aa, chain - ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 99 1 99 99 171 98.0 1e-41 MRILVSYANGSGTSLMMMRSVEKAMKELGVPITKIHHCAISEGKSSASQYDVVFTPVNFL QMFQQAEKRGVTVIGIKNVMSAKEIQEKYMASDRYQKSE >gi|308151768|gb|GL476254.1| GENE 41 37651 - 39138 1514 495 aa, chain - ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 11 473 10 469 485 394 47.0 1e-109 MGEFLLNSWTYFATNVLTQPAYLIGFIVLLGYLLLRRPFYECLAGFLKATVGYFILSVGS GGLVNNFRPILVGLKERFNLQAMVTDPYFGQNAVDAGLMKTFGRTFGDVMILLLIAFIMN ILLVRFQKYTKLRAVFTTGNVQIQQAATAFWILLFCFPNLGRIEVLIFMGLILGCYWAVA SNLTVGITQELTEGAGFAVAHQQMFGIFIFAKLAEWLKKRDQKKHRSEKVDKKLEDIELP GFLSIFNENMVATSILMLFFFGIILLVLGQDYLIQAKFMQEGQSFFFYIMTTSLNFAVYL AILQLGVRTFVDELTQSFQGISNTILPGAVPGIDVAATFGFGSPNAVTIGFLFGALGQFL MIGLLILLKSPTIVIAGFIPLFFDNAVISVYANNRGGVKAACLFPFLSGLIQVGGSALFA TWIGLSQYGGYLGMFDWATAWPLFTIIMKVLGYVGVAVVVIGLLIIPQLQYRKNPEGYFM IVNDYEQYAKKFQEN >gi|308151768|gb|GL476254.1| GENE 42 39151 - 39609 579 152 aa, chain - ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 21 149 20 146 148 84 37.0 5e-17 MLTYFWEQELIHYPDKEPVSWQEAIQESCLILLQKHVIDQSYVDEIIQCVETFGPYIIIA PEVAMPHSSEESAGVFGTAISFTKFKQAVTFTGDQEAKTATLFFTLAAQNPAEHLENIQQ LMDLLMTDGVIADLLATNTPMDFKEVMEKYQL >gi|308151768|gb|GL476254.1| GENE 43 39627 - 40694 1094 355 aa, chain - ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 355 3 356 356 483 62.0 1e-136 MSKSIHEITKESWLKATFPEWGTYLNEEINQTTVLQGTVALWWLGCTGIWLKTHENTNIL CDLWCGTGKQTHGNGLMKNGHQMMRMSGCQKMQPNLRTQPFVIDPFEIKEVDALVVTHIH SDHLDIHTAAAVHQNCPKALFIGPKEVVKTWQRWGVPAEKTRVIEPGQEIKVNDVNVVAL EAFDRTALITSDDPENTFKGKMPQDMNELAVNYLFETSGGTVYHAGDSHYSNLFAKHGNQ YAIDVCLGAYGENPRGITDKITSVDMLRMAESLNAKVVIPVHYDIWSNFMADPKEIMEIW KFKKDRLHYQFKPYIWQVGGKFVYPDDKDNLEFNFDRGFDDVFVKENDTPFPSFL >gi|308151768|gb|GL476254.1| GENE 44 40888 - 41652 663 254 aa, chain + ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 9 251 4 249 258 104 32.0 2e-22 MKSSLETIEKRQQNILALLQKNKQMTTYKLADVLNVSLSTIRRDLNVLETKNDIIRKYGY CIYNDQNQKDFDQSGPELLKQAIARVACSYLSDYDTVFINSSSTALNILHYLKADHLTIV TNNLKIATKPHVSQYNYILTGGELRFPKEVLVGDIAINTITATHADVCVIGCSGVSLEHG VTTKIFNEAKINELMIKQTTKVKILVADHRKIGLTSKFKIADITAFDCLITDKHCSSTLI TELRKTGLKVIQVD >gi|308151768|gb|GL476254.1| GENE 45 41746 - 42258 515 170 aa, chain - ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 1 168 1 168 174 159 47.0 2e-39 MKILVVSDNHCDRDCLVDLVNHYEGQVDALFHCGDSELEPTDELWQKLIVVQGNCDFYDE FPKTVTKKVGDQVIYMTHGHLANVRMGLTTLALQAEEAGATIALFGHTHVLGAERHNNIL FVNPGSIRLPRGPVQEKTYAIIESTPEQYLVQYYNKEHQPLERLKATFTK >gi|308151768|gb|GL476254.1| GENE 46 42271 - 43626 478 451 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 231 438 5 213 223 188 49 8e-47 MIRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWV AAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVI QADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYA EDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYA LASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLPDVEETGRTFE ENARLKAETIAEILQKPVLADDSGLIVDALGGMPGIYSARFAGEPTNDASNNAKLLHELT GVPKEKRQARFHCTLVFAEPKKESLVVEAEWPGEVGTIPRGEGGFGYDSLFYVPELGKTA AELSGEEKNKVSHRGQAVAKLKEQWEEWLKK >gi|308151768|gb|GL476254.1| GENE 47 43619 - 44446 776 275 aa, chain - ## HITS:1 COG:lin1200 KEGG:ns NR:ns ## COG: lin1200 COG0796 # Protein_GI_number: 16800269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Listeria innocua # 6 270 2 265 266 325 58.0 4e-89 MRMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGT LGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGL DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF YTTGSAKMFEEIASSWLGIENLKAQQIHLGGNEND >gi|308151768|gb|GL476254.1| GENE 48 44711 - 45442 632 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 51 1e-64 MISLEHVNKYFGEHHVLKDITLNVEQGEKIVIIGPSGSGKSTLIRCMNQLEKVNDGSVVI DNIDITKPKAPIQKVRQKVAMVFQNFNLYAHKTIIDNLTLAPIKVMGVSKEEAVRTGMEY LERVGLADKASAYPSQLSGGQQQRVAIARALNMHPEIILFDEPTSALDPEMIQEVLDVMV DLSKQNITMVCVTHEMGFARQVADRVIFMDQGQIIEQGTPEHFFTSTENPRAKEFLSKII HNG >gi|308151768|gb|GL476254.1| GENE 49 45477 - 46304 1104 275 aa, chain + ## HITS:1 COG:SP0609 KEGG:ns NR:ns ## COG: SP0609 COG0834 # Protein_GI_number: 15900517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 42 274 18 247 254 240 54.0 2e-63 MKKQNKWLAGLSLLVLAGIIVGCGSGNNDSTSKSASSNKTVTVEQLKKAGKIKIGVKEDI PNFGYMNPDTNKNEGMEPDIARLIAKEITGSEENVEFVGVTAKTRGPLLDNGELDMVIAT FTITDERKKTYNFTTPYYTDEIGFLVRKEDNFSSMKDLDGKTIGVAQSATTKENLEKKAQ EEGIKFTYQELGSYPELKTALTSKRIDAFSVDKSILSGYVDGKTEILKDGFSPQEYGITT KKANTELNDYLNGLIEKWEKDGTLEKIYQDWGLKN >gi|308151768|gb|GL476254.1| GENE 50 46350 - 47063 706 237 aa, chain + ## HITS:1 COG:SP0608 KEGG:ns NR:ns ## COG: SP0608 COG0765 # Protein_GI_number: 15900516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 17 236 4 224 225 254 60.0 1e-67 MFLLANISWLEEGPFALYRWEALFQDWRIFGQAFLYTILLSLGAILVAFALGIFFGSLSA TKSKLLHAISRVYVEFFQNTPLLIQFIVVYYGFPLLSPLLSFSITTIAILCVGLYHGAYI SEVVRSGIGAVPRGQFEAAYSQGLTYGQTMRYVILPQAWRIMLPPLTNQVVNLIKNTSTV AIISGADVMFAANSWSSVNLNYIPAFALAGFLYFILCFPLANLARKMEEKNKKAYSR >gi|308151768|gb|GL476254.1| GENE 51 47075 - 47740 682 221 aa, chain + ## HITS:1 COG:SP0607 KEGG:ns NR:ns ## COG: SP0607 COG0765 # Protein_GI_number: 15900515 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 220 2 217 219 251 64.0 8e-67 MPFSEEMRQLLTANNFQFLFNGLKLTLYISFVSIILSTIFGTILAVLRNQTNGPLKLLAS IYVEVVRNIPNLLWIYVIFLIFKIKSTPAGIVSFTVFTTAALAEIIRGGLNGVDKGQIEA ARSQGFSNWQILYHIVLPQAIRNVLPAIVSQFVTVIKDTSFLYSVIALQELFGKSYILMG RYAQTGQVFTIYGIVALIYFIINFSISQFSRWLSRNWAKSY >gi|308151768|gb|GL476254.1| GENE 52 47938 - 50361 3290 807 aa, chain - ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 807 1 655 655 677 55.0 0 MLVSYKWLNEYVNLSNVTPQELADKMSVTGIEVEGVAVPEEGLKKIVVGEVKECVSHPNS DHLSICQVDIGEEELSQIVCGAPNVKAGIKVIVALPGSRIAGNQKIKKGKMRGEVSNGMI CSLEELGYSDNVVPKAYAEGIYYLPQEAVNGTPVFPYLDMDDAIIELSITPNRADALSMR GVAYEVGAIYRQTPQFNDPELKEDASDNVGNYVTVTVEDSQDAPAYQIRVIKDVTIAESP QWLQNRLMNEGIRPINNVVDVTNYILLLFGQPLHAFDYQKLDSKEILVRRATAAEELITL DGETRQLTEENIVITNGKTPVGLAGVMGGANSEISQETTTVALEAALFNPLSIRKTSKQF NLRSESSSRFEKGINQATVGLACDVAAAMIAELADGTVVSGTAVGSEVAVKEAQVAVTLE RINQYLGTALDEATVNEIFEALGFAYEVNQGAYEITIPPRRWDIAIEADIIEEVARIYGY DHLPSTLPSGETVAGSLTKAQHVTRQLKSLLEGHGTSEAISYALTTEEKSRQFMMKESQT TRLQWPMSEERSVLRMNLISGLLDDVAYNVARKNNNIAFYEVGRVFYQTEDPTKNLPTEE NHLALALTGNTMVKDWQTKATAVDFYTVKGLVESIVAVLGLTEKISYQATTAIPEMHPGR TAWIYLEDEVVGFVGQVHPTTAKAYDIPETYVAELNLQQLVATEAGGVTYEAVSKFPAVS RDIALLVDETVTNQELVKTISDNAGKYLKEIHLFDVYQGKKLGAGKKSMTYSLTFVNAEA TLVDEEINRSMEKVEKALIEKHQVEVR >gi|308151768|gb|GL476254.1| GENE 53 50369 - 51415 1415 348 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 539 72.0 1e-153 MTLQAQLEALRDNTLKEIAQVATLKELNQIRVETLGKKGPITEVLRGMKNLSPEERPVVG GFANEIRDLLTEAIEARKVVLENEALNAALKEESLDVTLPGKQMPQGTRHILTQVMEEIE DIFLGMGYQVVEGYEVESDHYNFERMNLPKDHPARDMQDTFYISDEMLIRTHTSPVQART MEKHDFSKGALRMISPGKVFRRDTDDATHSHQFHQIEGLVVDKNVTMGDLKGTLEVMMKK MFGEDRKIRLRPSYFPFTEPSVEVDVSCFKCGGAGCNVCKHTGWIEILGAGMVHPDVLQM SGIDPTEYSGFAFGLGPDRVAMLRYGVNDIRNFYQNDLRFLNQFKVKE >gi|308151768|gb|GL476254.1| GENE 54 51734 - 52078 471 114 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 6 109 2 104 107 101 52.0 4e-22 MEKVKTESFVLCPKFEKSFSILGKKWNGLIIDVLLERGPQRFGELKEKIPMLSDRVLVER LKELEAEGIITKAVRCGEGNRLEYFLTEKGEDLQLAMEQIQHWAEKWVKDEECS >gi|308151768|gb|GL476254.1| GENE 55 52148 - 55942 4101 1264 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 8 1254 5 1232 1232 770 38.0 0 MSKTIPLRPANEQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRL LIVTYTEAAAREMKERIQVALQKAMNEEQNPERRRHFSRQIALLPTANISTLHAFCLTVI RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSNDRSDDG LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESTLFQTYLKPLAVETLQRTLQRY EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFERYPTVRAE ELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAY GAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQE SILYWLRRPLSAEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRIILAENFR SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKATESV EFPELQSPELLIEDKTEGELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVLLTPTK KNNLTILDVFKSLEIPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLAAVLRSPIVG LKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEKWREQARRNQ ISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQ EKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGV GIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAM WKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHP ANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRT TSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPS AAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTAL GKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYK TDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGVIIDMQTGNVV DFIK >gi|308151768|gb|GL476254.1| GENE 56 55935 - 59525 3537 1196 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 1 1194 1 1157 1157 570 30.0 1e-162 MSVQFIRGTAVADLEAPLIQATKQWLEEDAQHEVFYLVPNHIKFEQEIQVLQKLRQLQTT TSDSITSTRLQVFSFYRLAWYYLQHTPFYSADVLSDAGAAMIFRKILVEAEEELKIFRGE INKPGFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQ MSQYGYESAEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVALL LDKQYPHDLPDPRSLFYEAGQTYHQLYQLARQKQIPILSDYVEKKEVLITNPDLQGLNDY WIQSQEHLPPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRD LDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTEL FMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEA EEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMW RLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKV PTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQY LRGTTGRKIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFE KNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPYWLNMEKALMNQSIAPL AKQVFESLTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDV FGLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTT SSRMNYIRYQLSQTIKKVSWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQG KIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQ LVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQMLKKYQFDGLLMKDPDLLDHLDTSLQAK QSSLLFPIEESAKEQIKPGRRQEDKFVTEPELGALLSHNRNKFIEAGNQIIGGEVQLNPA YQGKERIACRYCPFRSVCDFDVMLKENNYHRIENLSKEEIMARLLNKDEEGATEDE >gi|308151768|gb|GL476254.1| GENE 57 59636 - 60184 695 182 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 23 163 26 179 188 146 53.0 2e-35 MSLKSKELIKTVVFFACLALGLFLLRQFVFTPVVVRGHSMDPTLADGERVITLKNTEINR FDIITFPAPDEPDKNYIKRVIGLPGDTIAYKDDTLYINGKEVDEPYLDEFKKALTDGQPL TGDFSLKEKVPADSYFVLGDNRRNSKDGRVIGFIHKKDILGEVKFVMWPFSRFGPIPEVS KQ >gi|308151768|gb|GL476254.1| GENE 58 60405 - 61124 922 239 aa, chain - ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 236 5 224 227 213 49.0 2e-55 MTNEAIQNREPFLQNLREKLGVEKQPVSAHPFEPINHLPEEQLADKTSAELLTIVKERVE TIHTNLVETTQENLLTTIQQIVAEFGGGNLLLPTDARFEAYGLADLAKSLEAVSVKQWQP GSEQREANIQTAAQANIAIAFAEFLLAESGTIVVESNAGQGRALHFLPKHYISIIPFSKL VPRSTQPAAFYTDKIEKGEKIGSAIHFISGPSNSGDIEMQLVVGLHGPLEVCYVVVMNR >gi|308151768|gb|GL476254.1| GENE 59 61117 - 62589 1392 490 aa, chain - ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 490 490 773 72.0 0 MGLSTSNKPLSERIEESKKDVFMQKAVAKAQDAQWEKREGAREALGNWPQWRELGEQIRQ HTIQYLPDYLEEFSDNVAKRGGKVFFAQTAEEANEYVKQVVLEKKAKKIVKSKSMVTTEV DIDPMLLGLDDVSVMETDLAEFILQMDDWDEPSHIVFPSIHKNREQIRQVFAKKLGYQGD NDPVNLARCAREVMRKFFLEAEIGITGCNFAIADSGLINLNTNEGNADLTISIPKTQIVL MGMERIVPTMREAEVLDNLLARSAVGQNLTTYVTFAGQKNADESDGPEEFHVVILDNGRS KALGTAFQPVLQCIRCGSCLNVCPVYRHIGGHGYGSIYPGPIGAVLSPILGGYKQFGELP YASSLCGACTETCPVKIPLHELLIEHRKVMTDDLKMKHGFEDFQMRMVGKATGSPAMFKA AMKVDHAAAGILSKQKEITVENMYNHGGYLDKGPGLVKGWTDVRDLPRPPKSSENFRSWF KKHQEGEKND >gi|308151768|gb|GL476254.1| GENE 60 62602 - 63363 814 253 aa, chain - ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 245 1 246 256 364 72.0 1e-101 MKVSIFSTCVVDLLFPNVGQAMVEVLERYGCETVLPTSQTCCGQPTYNSGYVTESTTTLK NQIDSFDGADYVVGPAGSCVGMMKEYHKFLADDPIYGPKAQRLAERTYEFSQFLYRVLGV KDVGATLHGKATYHRSCHMTRILNERESPFVLLDHVKGLEMIPLGHLENCCGFGGTFSVK MPAISEQMVTEKMNDVIDTGAEILISADMGCLMNIGGKFNRDGKKIKIMHIAEVLNHEVD ESRMDQPQIISVG >gi|308151768|gb|GL476254.1| GENE 61 63715 - 64020 212 101 aa, chain + ## HITS:1 COG:no KEGG:EF1105 NR:ns ## KEGG: EF1105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 122 100.0 6e-27 MFISFNMFILLIVATILMIFLIIYLTVTGNDKNNKKKQKKETKRTTPTLNKKTTVPPSQK PNVVTDVAKKSEPEKQAVQRTQQSTTREDETSQFTRSQRHK >gi|308151768|gb|GL476254.1| GENE 62 64201 - 64386 251 61 aa, chain + ## HITS:1 COG:no KEGG:EF1104 NR:ns ## KEGG: EF1104 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 73 100.0 2e-12 MSAKRFIQLFICYAISMIVAILLTDLFNFSSPIAYLVVASIIGYVVITVPLTIMTLLKNK N >gi|308151768|gb|GL476254.1| GENE 63 64557 - 65909 1336 450 aa, chain + ## HITS:1 COG:L18622 KEGG:ns NR:ns ## COG: L18622 COG1113 # Protein_GI_number: 15672791 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Lactococcus lactis # 3 443 2 441 446 541 71.0 1e-154 MSETQQTTLKKQLSSRHITMLALGGAIGAGLFKGSGEAIGIAGPSVLIAFLIGGAVLFIV MSGLGKLVLDGGDTHHGLSGLVRPFLGAHSADFIDWVYYSMWTINIIAEAVAAASFLQLW FPNIPAWFFVFILAILTTLINLYSVRLFAETEYWLAFAKISVIILLIIFGVYLVGQQMLG SGVFPTLQSITDHGGFAPHGMKGIVNSLLVVIYSYGGSELIAITVSEADDPKKAIPKAIR GVMGRIISFYIIPLFLLLIIFPWNTLAGTTVSPFVMVFEKMNIPFAADIVNFVIILALFS SINSGVYASSRLLYFRLKDKKGPMSKLAVLNKHQVPQRSVFFCASVLYLGVILSYFVGDE LFGYLAGSLSYTVLLIWILISAAAFVLSLKRGSLFEKSINLLALIILGLIFIGILFTNSL GVTLLTGLLYFVIFFSYRKKNDSFLLSDES >gi|308151768|gb|GL476254.1| GENE 64 66021 - 66422 524 133 aa, chain + ## HITS:1 COG:no KEGG:EF1102 NR:ns ## KEGG: EF1102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 210 85.0 1e-53 MKKIGAILLIGVLIVGGYISYRFYADTYKGEKAYAQVPLEIPERKQALNNQKQPVSGLYS LKYALTFVKSNGKTQVMDYERTDKNPQPLEPNAYIEATISKKRIIQSPVKIDKKEIPEKA FAQLNNRKTTSDN >gi|308151768|gb|GL476254.1| GENE 65 66419 - 67153 604 244 aa, chain - ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 233 1 242 247 146 39.0 3e-35 MNNNEQELAEFWDEFAEEYEEIQQESPFPIARELRDFLVQEGIFPCQTFLDIAGGTGRYL PFFQEQVTEYTLADISQRMLEIAEAKAQSNVVFLHQSQERLIETGKKFQVVFSAMNPALD TPEKVNALCQLSEKWCLIFRLVEEQDSLFSPFEQESNPQLNWMAKYKAFLKKEQRPFFTK KFFFEASEAISKDFFRNYFEEQWSVPILEQRIQEIFGSHEIKQNQHTVIYELIVISCKKT TSDY >gi|308151768|gb|GL476254.1| GENE 66 67223 - 68818 1485 531 aa, chain - ## HITS:1 COG:jhp0343 KEGG:ns NR:ns ## COG: jhp0343 COG1132 # Protein_GI_number: 15611411 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori J99 # 2 529 9 543 551 157 25.0 4e-38 MTKKIWSHFRKSFTWYILIGVIVSLCSALAIYFFQQLLDHYQKSFQLGLLVAYGTTIILI PLLSYCEQKPKAYLTNGIYFYLKKLSLIKMSKISYEEYLKLGAGALLQKVEVGAAAGRNI HLNFYGRLFRELIPETLFNLFFIALIDKKLLPAILIGYVIVFILTKILLKTLQNMKEKTL ISEEAMNATLIRGMTELVTFRINRKYKKEIENYALMAEENSQNITKMTMIHEFFFGFFAL LVALIKVSIVVLSFTNVVTLSLGGLVAIVMYIDRIYTPIAIFNVLFVQYNLDKVAYQRLE DFYKKEDDPDLVVPGKALPEIQTISLKDVCFSVDSQTIMSQQNRQFSMNKTYGLIGKSGT GKSTLIKLILGLLKPTEGTIYVNQFPLTQFNLEDYYEKVFYLSQDVPIFQGTLKENIVFN QEISDEQVIEAMYRFQLGELYERLPEGLNTIVSEKGMNFSGGEKQRIAFTRLAFTQAEIL ILDEATSALDEKTEEKVLQEVQEFTHNKLTILVTHRPKTLRFVDEIIDLNE >gi|308151768|gb|GL476254.1| GENE 67 68943 - 70685 1607 580 aa, chain - ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 513 1 524 674 737 90.0 0 MTKSVKFLVLLLVMILPIAGALLIGPISFGAELSKSPIVDKVELDHTTLYQGEMTSIKVS FSDKENQKIKPGDTITLTLPDELVGMTENDGSPRKINLNGLGEVFIYKDHVVATFNEKVE SLHNVNGHFSFGIKTLITNSSQPNVIETDFGTATATQRLTIEGVTNTETGQIERDYPFFY KVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYIS LAEFEQQGYGKIDFVTDNDFNLRFYRDKARFTSFIVRYTSTITEAGQHQATFENSYDINY QLNNQDATNEKNTSQVKNVFVEGEASGNQNVEMPTEESLDIPLETIEEWEPKTPTSEQAT ETSEKTDTTETVESSQPEVHVSPTEEENPDESETLGTIEPILPEKPSVTTEENGTTETAE SSQPEVHVSPTEEENPDESETLGIISPIIPEKPSVTTEENGTTETAESSQPEVHVSPTKE ITTTEKKQPSTETTVETNKNVTSKNQPQILNAPLNTLKNEGSPQLVPQLLSEPIQKLNEA NGQRELPKTGTTKTPFMLIAGILASTFAVLGVSYLQIRKN >gi|308151768|gb|GL476254.1| GENE 68 71020 - 71325 342 101 aa, chain + ## HITS:1 COG:no KEGG:EF1098 NR:ns ## KEGG: EF1098 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 174 100.0 1e-42 MKNSYFDGGLATYIGTSILATLITVFTLGICAPWGICMMYNWKIKHTVIDGKRLYFDGTA MQLFGHWIKWLLLTIITLGIYGFWLNIRLQQWITKHTHTLS >gi|308151768|gb|GL476254.1| GENE 69 72135 - 72647 573 170 aa, chain - ## HITS:1 COG:no KEGG:EF1097 NR:ns ## KEGG: EF1097 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 288 100.0 6e-77 MELQVTKKAKFFCLAMALLMTLGIFISAGTSVYASDQLEDSEVEAVAKGLEEMYANGVTE DNFKNYVKNNFAQQEISSVEEELNVNISDASTVVQARFNWNALGSCVANKIKDEFFAMIS ISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCGLS >gi|308151768|gb|GL476254.1| GENE 70 73007 - 73210 390 67 aa, chain - ## HITS:1 COG:CAC0976 KEGG:ns NR:ns ## COG: CAC0976 COG2155 # Protein_GI_number: 15894263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 61 1 60 69 57 57.0 5e-09 MKYLDIIALILLIVGGLNWLLVGAFNFDLVATISGGATTPLAKIIYIIVGICAIYSIKFL APLFREP >gi|308151768|gb|GL476254.1| GENE 71 73405 - 73698 227 97 aa, chain + ## HITS:1 COG:no KEGG:EF1095 NR:ns ## KEGG: EF1095 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 97 124 97.0 1e-27 MRAKLFLILRNRVLSRVVFVILFLHVFFTTNDFTVLLLLLLLNYLLTIEDSAKKNRKIQT WQEFKQSIDWPFVAFYSGLALLVISLILLFLWFNYAR >gi|308151768|gb|GL476254.1| GENE 72 73765 - 74619 948 284 aa, chain - ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 22 284 1 259 279 180 40.0 3e-45 MKSKKKRRIIDGFMILLLIIGIGAFAYPFVSDALNNYLDQQIIAHYQAKASQENTKEMAE LQEKMEKKNQELAKKGSNPGLDPFSETQKTTKKPDKSYFESHTIGVLTIPKINVRLPIFD KTNALLLEKGSSLLEGTSYPTGGANTHAVISGHRGLPQAKLFTDLPELKKGDEFYIEVNG KTLAYQVDQIKTVEPTDTKDLHIESGQDLVTLLTCTPYMINSHRLLVRGHRIPYQPEKAA AGMKKVAQQQNLLLWTLLLIACALIISGFIIWYKRRKKTTRKPK >gi|308151768|gb|GL476254.1| GENE 73 74713 - 76596 2381 627 aa, chain - ## HITS:1 COG:no KEGG:EF1093 NR:ns ## KEGG: EF1093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 627 1 625 625 1107 98.0 0 MKQLKKVWYTVSTLLLILPLFTSVLGTTTAFAEENGESAQLVIHKKKMTDLPDPLIQNSG KEMSEFDKYQGLADVTFSIYNVTSEFYEQRAAGASVDAAKQAVQSLTPGKPVAQGTTDAN GNVTVQLPKKQNGKDAVYTIKEEPKEGVVAATNMVVAFPVYEMIKQADGSYKYGTEELAI VHIYPKNVVANDGSLHVKKVGTAENEGLNGAEFVISKSEGSPGTVKYIQGVKDGLYTWTT DKEQAKRFITGKSYEIGENDFTEAENGTGELTVKNLEVGSYILEEVKAPNNAELIENQTK TPFTIEANNQTPVEKTVKNDTSKVDKTTPNLDGKDVAIGEKIKYQISVNIPLGIADKEGN ANKYVKFNLVDKHDAALTFDNVTSGEYAYALYDGDTVIAPENYQVTEQANGFTVAVNPAY IPTLTPGGTLKFVYFMHLNEKADPTKGFKNEANVDNGHTDDQTPPTVEVVTGGKRFIKVD GDVTATQALAGASFVVRDQNSDTANYLKIDETTKAATWVKTKAEATTFTTTADGLVDITG LKYGTYYLEETVAPDDYVLLTNRIEFVVNEQSYGTTENLVSPEKVPNKHKGTLPSTGGKG IYVYLGSGAVLLLIAGVYFARRRKENA >gi|308151768|gb|GL476254.1| GENE 74 76593 - 78023 1498 476 aa, chain - ## HITS:1 COG:no KEGG:EF1092 NR:ns ## KEGG: EF1092 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 476 1 476 476 863 98.0 0 MKNARWLSICVMLLALFGFSQQALAEASQASVQVTLHKLLFPDGQLPEQQQNTGEEGTLL QNYRGLNDVTYQVYDVTDPFYQLRSEGKTVQEAQRQLAETGAMNRKPIAEDKTQTINGED GVVSFSLASKDSQQRDKAYLFVEAEAPEVVKEKASNLVVILPVQDPQGQSLTHIHLYPKN EENAYDLPPLEKTVLDKQQGFNQGEHINYQLTTQIPANILGYQEFRLSDKADTTLTLLPE SIVVKVAGKTVTTGYTLTTQKHGFTLDFSIKDLQNFANQTMTVSYQMRLEKTAEPDTAIN NEGQLVTDKHTLTKRVAVRTGGKSFVKVDSENAKITLPEAAFIVKNQAGEYLNETANGYR WQKEKALAKKFTSNQAGEFSVKGLKDGQYFLEEISAPKGYLLNQTEIPFTVEKNSYATNG QRTAPLHVINKKVKESGFLPKTNEERSIWLTIAGLLIIGMVVIWLFYQKQKRGERK >gi|308151768|gb|GL476254.1| GENE 75 78027 - 81344 2875 1105 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 745 1035 1087 1356 1661 75 29.0 7e-13 MITDENDKTNINIELNLLNQTEQPLQREIQLKNAQFMDTAVIEKDGYSYQVTNGTLYLTL DAQVKKPVQLSLAVEQSSLQTAQPPKLLYENNEYDVSVTSEKITVEDSAKESTEPEKITV PENTKETNKNDSAPDKTEQPTATEEVTNPFAEARMAPATLRANLALPLIAPQYTTDNSGT YPTANWQPTGNQNVLNHQGNKDGGSQWDGQTSWNGDPTNRTNSYIEYGGTGDQADYAIRK YARETTTPGLFDVYLNVRGNVQKEITPLDLVLVVDWSGSMNENNRIGEVQKGVNRFVDTL ADSGITNNININMGYVGYSSDGYNNNAIQMGPFDTVKNPIKNITPSSTRGGTFTQKALRD AGDMLATPNGHKKVIVLLTDGVPTFSYTVSRVQTEADGRFYGTQFTNRQDQPGSTSYISG SYNAPDQNNINKRINSTFIATIGEAMALKQRGIEIHGLGIQLQSDPRANLSKQQVEDKMR EMVSADENGDLYYESADYAPDISDYLAKKAVQISGTVVNGKVVDPIAEPFKYEPNTLSMK SVGPVQVQTLPEVSLTGATINSNEIYLGKGQEIQIHYQVRIQTESENFKPDFWYQMNGRT TFQPLATAPEKVDFGVPSGKAPGVKLDVKKIWEEYDQDPTSRPDNVIYEISRKQVTDTAN WQTGYIKLSKPENDTSNSWERKNVTQLSKTADESYQEVLGLPQYNNQGQAFNYQTTRELA VPGYSQEKIDDTTWKNTKQFKPLDLKVIKNSSSGEKNLVGAVFELSGKNVQTTLVDNKDG SYSLPKDVRLQKGERYTLTEVKAPAGHELGKKTTWQIEVNEQGKVSIDGQEVTTTNQVIP LEIENKFSSLPIRIRKYTMQNGKQVNLAEATFALQRKNAQGSYQTVATQKTDTAGLSYFK ISEPGEYRMVEQSGPLGYDTLAGNYEFTVDKYGEIHYAGKNIEENAPEWTLTHQNHLKPF DLTVHKKADNQTPLKGAKFRLTGPDTDIELPKDGKETDTFVFENLKPGKYVLTETFTPEG YQGLKEPIELIIREDGSVTIDGEKVADVLISGEKNNQITLDVTNQAKVPLPETGGIGRLW FFLIAISTFVIAGVYLFIRRPEGSV >gi|308151768|gb|GL476254.1| GENE 76 81672 - 83093 1309 473 aa, chain + ## HITS:1 COG:no KEGG:EF1090 NR:ns ## KEGG: EF1090 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 853 99.0 0 MIRFLEKNYRKMEEIIRVLSISDKWMTKKELAKYIGSSESTFIRYIEEIKQRWGESLTIK TSHKLGYRLENFNVSLYLNVLTDMAKTSTTTQLLHEFIQNPGKTIEYYCDTINISRSSFA RKLKQCNQVLETYSLRVIVDQGYQLTSQTEELPLRIFTTFFFLMYYGHYELPYQLDKQEI KQLMRRNQCQLNIISMDNSYEHDFFIMYFIVDLLREHQGFQQRFQKKTDKKSPIKMEDYL LLSRHFTGLSRETYREVLWYFQRGAFQQYYSEDQEVISQRIRENLKFNAFSQIEQLTEEV VDFAVHLLTCLYLFSQLVPFDTSELTQRATFFTRQIHFTQLHLYARLKAELHFFSALLET NLLNYSSSYIFWLLNTFPEINQSFDSKKILIISDMGLNHSQYIGNYVHDILALHRIRSNT LAITEEQLGDHRLEEFDLIITNQPIIETSVPSILINDAILFSNKRELLDLLNF >gi|308151768|gb|GL476254.1| GENE 77 83279 - 83674 341 131 aa, chain - ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 225 100.0 4e-58 MFNAYREYWNNITTMNASATRAQYWWPQLINYLVLGIYSAITGVYRYIEVTPNDGTIIKE WNTVTIIFFLLTALIWLANFTVRARRLHDRDHSNWWILFYLLPFIGTLVIFITLILPSKS HTRWPVNQSEI >gi|308151768|gb|GL476254.1| GENE 78 83745 - 84458 634 237 aa, chain - ## HITS:1 COG:SSO1074 KEGG:ns NR:ns ## COG: SSO1074 COG2761 # Protein_GI_number: 15897941 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Sulfolobus solfataricus # 1 206 3 208 225 91 28.0 1e-18 MKIEFFHDIICSFCFPMSDRMHEIQQEFPEIELIHRSFALGWSANDFETMFGSRAAVKEE VLTHWVHANQNDSKHRFNIEGMRKQRFDFPTSKNALLAAKAAGYIGNQDTYWLLFDKLQE GLFMRSLNIEEPEVIEELVKETTIDFALWKEAVASEAVWTAVQEDFALASAYGLQGVPAL IINQKYLINGAVPKQQISQTIQKILAEEKQQQPLVSLTPSSEESASCEFKEGTWTCH >gi|308151768|gb|GL476254.1| GENE 79 84597 - 85043 369 148 aa, chain - ## HITS:1 COG:BS_bltD KEGG:ns NR:ns ## COG: BS_bltD COG0454 # Protein_GI_number: 16079713 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 141 1 148 152 127 44.0 5e-30 MEIHFEKVTSDNRKAVENLQVFAEQQTFIESMAENLKESDQFPEWESAGIYDGNQLIGYA MYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIR LYQQLGFVFNGELDTNGERVMEWTYQNK >gi|308151768|gb|GL476254.1| GENE 80 85413 - 85655 240 80 aa, chain - ## HITS:1 COG:no KEGG:EF1085 NR:ns ## KEGG: EF1085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 80 107 100.0 2e-22 MKTKIGKTVILSAFLFTSFLLLSGCTSAGEEMEKTIDRQKEKVDKTVDKQKHKNENSMES YDEKVDRSLDSQEDKIDTTE >gi|308151768|gb|GL476254.1| GENE 81 85726 - 86157 545 143 aa, chain - ## HITS:1 COG:BH3184 KEGG:ns NR:ns ## COG: BH3184 COG0589 # Protein_GI_number: 15615746 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 143 1 141 147 101 38.0 6e-22 MSVYQHILVALDGSDQSEKAFHEAVRIAKEEQATLYLATIINDAEFTTSPFSFEELYDLE KHKSEEVLTEKAKQASEIGVKTVKKIVELGSPKRYLANTISENYAIDLIVLGATGRGAIQ RTLIGSTTDYVVNHALCNVLVVR >gi|308151768|gb|GL476254.1| GENE 82 86210 - 86515 372 101 aa, chain - ## HITS:1 COG:no KEGG:EF1083 NR:ns ## KEGG: EF1083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 159 100.0 3e-38 MVKDAAYIIEEITTILEGTYFVITKKANKRRMCLHVSDTAKEFLRCRLEYETFLEQQFDY ATMFLETCTEDVSVEIQTGLLEETNYQALTVEKLQQIATKM >gi|308151768|gb|GL476254.1| GENE 83 86533 - 86715 312 60 aa, chain - ## HITS:1 COG:no KEGG:EF1082 NR:ns ## KEGG: EF1082 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 82 98.0 8e-15 MGHHLKGHHGKKTNANGGFLTKLLAGGALVGVGKKLYDNREKIKELLSDDKEKSNDTENK >gi|308151768|gb|GL476254.1| GENE 84 86802 - 87191 547 129 aa, chain - ## HITS:1 COG:no KEGG:EF1081 NR:ns ## KEGG: EF1081 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 232 98.0 3e-60 MKRTKKEFTPYNEYHDRPFELKWATAFALGELQEGIEASDEYSKRAFERLPQQTTEEIEE YLEQSLKNNQVLEIQLNTLDDFGRVQPPIVGVFEGMSSMEYAKVGHTHILFEEIRHIKSH KFTKWSSLD >gi|308151768|gb|GL476254.1| GENE 85 87196 - 88512 1238 438 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 388 47.0 1e-107 MKFDYEKEPSRDILCIDCKSFYASVECAERGLDPLKTMLVVMSNAENAGGLVLSASPMAK KVLGVSNVTRKNQVPAHPDLYVVPPRMNLYMKKNQEINNLYKKFVADEDHSVFSVDESFL DVTASLSYFHCETAYKMARIIQRVVYNHVGIYVTVGIGDNPLLAKLALDNGAKHSPDFIA EWRYDCVPDTVWQLPSLTDFCGIGRRMAKRLNRLGIDSVYELAQANPHLLQETFGVMGLQ LYAHSWGIDRTFLGKKAQHKAEKSFGNSQILPRDYARRDQIELVLKELTEQVAARLRKAH CQTECITVYVGYSKGQIDREGRTGWRKQQTIPATNNTKVLITYVLALFREHYLAGTDVRQ LGLSYGKLVWNESLQLDLFSEPEEQISEMELNYLIDKIRQKFGFQALIHASSLLEGATAI HRSGLVGGHAGGNVGLGG >gi|308151768|gb|GL476254.1| GENE 86 88663 - 89817 1357 384 aa, chain - ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 381 1 381 387 504 81.0 1e-143 MTKKNSMMYLAISNLFLVFLGVGLVIPVIPQLKEEMHFSGTTMGMMISIFAIAQLITSPI AGVLSDKIGRKKMIATGMLVFSISELLFGLAQAKSGFYISRGLGGIAAALLMPSVTAFVA DMTTISERPKAMGLVSAAISGGFIIGPGVGGFIAYLGIRAPFFAAAFLAFIGFILTLTVL KEPEKRILAAVEAKKGSFMDILRNPMFTSLFVIILISSFGLQAFESIYSIMATINFGFTT SEIAIVITVSGILALICQLFFFDAIVQKIGEMGLIQLTFFASAIFIAVIAFTKNNLVVVF STFIVFLAFDLFRPAVTTYLSKHAGDQQGTINGLNSTFTSFGNILGPMAAGALFDINHFF PYYVSAVILLGTGFLSLFLNRNKM >gi|308151768|gb|GL476254.1| GENE 87 90010 - 90450 524 146 aa, chain - ## HITS:1 COG:SP1023 KEGG:ns NR:ns ## COG: SP1023 COG0454 # Protein_GI_number: 15900894 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 142 1 141 143 131 47.0 3e-31 MIRKMKPTDAAALTIINKEQLGYEVSVDVTCKQIEKLLLASDREFLYVYEETKTGKILGY VHAQLYETIYSQTLLNVLGLAVAKEAEGRGIGKQLMTKLETEAKKCNLSAIRLNSGEQRT AAHQFYEHIGYVSDKKQKRFIKYLDT >gi|308151768|gb|GL476254.1| GENE 88 90499 - 91005 530 168 aa, chain - ## HITS:1 COG:no KEGG:EF1075 NR:ns ## KEGG: EF1075 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 328 100.0 4e-89 MSELVVIREMQEKDILALDTQFVQQGWPSRQEILMNYLEEQLVKQRTVFVAEKKATLLGY VTLLPLAKEGPFKNLYPEIADFNVFLPFQKQGVGRLLLNRAENVAKSYADTVSLGVGLHP GYGAAQRLYIKQGYVPDGSGVWFQNKQLKPNERCVNDDELVLYLSKKL >gi|308151768|gb|GL476254.1| GENE 89 91078 - 91341 366 87 aa, chain - ## HITS:1 COG:no KEGG:EF1074 NR:ns ## KEGG: EF1074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 90 172 97.0 6e-42 MDYQERLKNLPPEVMTAFSESFIFLISNDKVQHFPARDLTQAEMIQRVKEKLGEAVTWSL WQGFVIAVNSEKTCVAVLPKYHQLDGF >gi|308151768|gb|GL476254.1| GENE 90 91405 - 91899 460 164 aa, chain - ## HITS:1 COG:no KEGG:EF1073 NR:ns ## KEGG: EF1073 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 164 293 95.0 1e-78 MQPKLIILRGNSGSGKTTIAKALHRCLKEQSLLISQDVVRREMLRVKDKTGNLSIALLKQ LVAFGYQECQYVIVEGIFQKAIYHSFFQEMNHLFEGNVQVYYFDISFEETLKRHSQRNKN QEFGVVEMKRWWLPEDYLGLAGEQRLSEQLSEKQIIRQILADIQ >gi|308151768|gb|GL476254.1| GENE 91 91980 - 92984 925 334 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 329 1 331 335 246 40.0 5e-65 MRNIVTIKDIAEQVGVSSATVSRVLNYDETLSVSDETKKKIFETAETLNYKKRARKKQAG KKKIRFVQWFSDPEELDDIYYLSIRLGVEKRAEELGFLLVKESLTNLSQKRFDGTIALGK FDEKQVAALAALGAPLLFVDFDAMAFGQNSIVVDFAGSVKTIVQEFLAQGHQKIGMLSGQ EYTKESHVALVDPRFVAFKETLKDLDLYHQEWVVEAAFSVEEGYQAMKDFIEKADTRPTA FFAASDTLAIGAMRALQEVAIRVPEDISIIGFNDISVAKYVSPTLTTVKVHTEWMGELAV ETMKELCLNTPPVPRKIIVGTEFIQRDSTKHSSK >gi|308151768|gb|GL476254.1| GENE 92 92991 - 94484 1452 497 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 9 494 5 488 491 535 54.0 1e-151 MMKESSKWIAAFVEIIIENGDWTETDRYYLTNRITKLVGCDFFEQPEAVACEQEPLRVVE HLLNIAQANHQIDDSITEAEQLEAELMDFITPTPTIINQKFMDYYQESPRKATDYFYQLC KTNNYIKTKAIAKNIIFPMDSPYGKLEITINLSKPEKDARKILAEKKMSQKKYPACMLCM ENEGYYGRVNYPARTNHRIIRLNLEDEAWGFQYSPYAYYNEHAIFLDQQHREMKIEKKTF QRLLKITELFPEYFVGSNADLPIVGGSILSHDHYQAGRHTFPMDLAPMETRFSLKKYPEI TAGILKWPMSVIRLQSDHQEELVEAAELILTKWRNYSDERVSVRAYSEDGTPHHTITPIA RRKGSLFELDLVLRDNNVSEEFPDGIFHPHPEVQHIKQENIGLIEVMGLAILPPRLAQEL REVEKYLLKQPNQIAESHRAWADELSQQTITEANVKEVIQQGIGTIFVQILTDAGVFKRD EEGRRAFERFIQCIEND Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:40:56 2011 Seq name: gi|308151767|gb|GL476255.1| Enterococcus faecalis TX4000 genomic scaffold Scfld22, whole genome shotgun sequence Length of sequence - 65167 bp Number of predicted genes - 56, with homology - 56 Number of transcription units - 30, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 55 - 1224 832 ## COG1479 Uncharacterized conserved protein 2 1 Op 2 . + CDS 1227 - 2261 296 ## gi|256854704|ref|ZP_05560068.1| predicted protein + Term 2491 - 2543 14.2 - Term 2475 - 2535 18.4 3 2 Tu 1 . - CDS 2576 - 3964 1702 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 4118 - 4177 5.4 4 3 Tu 1 . + CDS 4312 - 4821 622 ## EF3021 hypothetical protein + Term 4842 - 4876 4.0 + Prom 4848 - 4907 6.1 5 4 Op 1 . + CDS 4959 - 5423 481 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 6 4 Op 2 . + CDS 5426 - 6352 818 ## EF3019 hypothetical protein + Term 6444 - 6486 7.0 + Prom 6377 - 6436 5.9 7 5 Tu 1 . + CDS 6504 - 8285 2066 ## EF3018 hypothetical protein + Term 8292 - 8329 7.3 + Prom 8311 - 8370 2.8 8 6 Op 1 . + CDS 8397 - 9137 758 ## COG0101 Pseudouridylate synthase 9 6 Op 2 . + CDS 9161 - 10120 798 ## COG1715 Restriction endonuclease + Prom 10128 - 10187 5.3 10 7 Tu 1 . + CDS 10236 - 10619 354 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 10642 - 10689 11.3 + Prom 10656 - 10715 8.9 11 8 Tu 1 . + CDS 10748 - 12010 1453 ## COG3633 Na+/serine symporter + Term 12013 - 12062 16.2 + Prom 12076 - 12135 3.2 12 9 Tu 1 . + CDS 12160 - 14712 2536 ## COG0474 Cation transport ATPase + Term 14735 - 14778 6.7 - Term 14680 - 14712 2.0 13 10 Tu 1 . - CDS 14718 - 16166 1094 ## EF3013 hypothetical protein - Prom 16190 - 16249 3.7 - Term 16214 - 16247 4.0 14 11 Op 1 . - CDS 16258 - 17439 822 ## EF3012 hypothetical protein 15 11 Op 2 . - CDS 17483 - 18907 1725 ## EF3011 hypothetical protein 16 11 Op 3 . - CDS 18894 - 20453 1835 ## COG0074 Succinyl-CoA synthetase, alpha subunit 17 11 Op 4 . - CDS 20431 - 21297 595 ## EF3009 hypothetical protein - Prom 21329 - 21388 4.6 18 12 Op 1 . + CDS 21428 - 23098 1358 ## COG2508 Regulator of polyketide synthase expression 19 12 Op 2 . + CDS 23132 - 24037 1018 ## SPCG_0521 hypothetical protein + Prom 24062 - 24121 6.5 20 13 Op 1 27/0.000 + CDS 24205 - 25794 1551 ## COG0286 Type I restriction-modification system methyltransferase subunit 21 13 Op 2 . + CDS 25803 - 27044 570 ## COG0732 Restriction endonuclease S subunits + Term 27050 - 27095 8.5 + Prom 27066 - 27125 5.3 22 14 Tu 1 . + CDS 27167 - 27658 504 ## MYPU_3700 hypothetical protein + Term 27664 - 27703 4.1 - Term 27652 - 27690 7.1 23 15 Op 1 2/0.167 - CDS 27694 - 28623 734 ## COG0582 Integrase - Prom 28646 - 28705 1.6 24 15 Op 2 . - CDS 28707 - 29864 784 ## COG0732 Restriction endonuclease S subunits - Prom 29920 - 29979 8.8 + Prom 29895 - 29954 11.4 25 16 Tu 1 . + CDS 29980 - 33123 3313 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Prom 33206 - 33265 4.6 26 17 Op 1 . + CDS 33335 - 34408 569 ## EF3007 hypothetical protein 27 17 Op 2 . + CDS 34433 - 35089 573 ## EF3006 hypothetical protein + Term 35091 - 35151 18.1 - Term 35079 - 35135 18.1 28 18 Tu 1 . - CDS 35141 - 36208 1130 ## COG3049 Penicillin V acylase and related amidases - Prom 36441 - 36500 8.4 + Prom 36159 - 36218 5.8 29 19 Tu 1 . + CDS 36427 - 38046 1498 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 38061 - 38115 15.1 - Term 38047 - 38103 15.5 30 20 Tu 1 . - CDS 38118 - 38810 428 ## EF3003 putative lipoprotein - Prom 38832 - 38891 12.2 + Prom 38808 - 38867 12.4 31 21 Op 1 2/0.167 + CDS 39003 - 39455 614 ## COG1846 Transcriptional regulators 32 21 Op 2 . + CDS 39474 - 39986 650 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 39999 - 40050 12.2 + Prom 40332 - 40391 6.5 33 22 Op 1 2/0.167 + CDS 40581 - 42077 1553 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases 34 22 Op 2 4/0.000 + CDS 42078 - 43442 1485 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Prom 43542 - 43601 6.1 35 22 Op 3 4/0.000 + CDS 43624 - 44847 1301 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 36 22 Op 4 . + CDS 44869 - 45654 987 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization 37 23 Tu 1 . - CDS 45772 - 47397 1387 ## COG2508 Regulator of polyketide synthase expression - Prom 47423 - 47482 6.6 + Prom 47370 - 47429 9.9 38 24 Op 1 . + CDS 47569 - 48777 1362 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase + Term 48792 - 48838 5.3 39 24 Op 2 . + CDS 48875 - 50134 1509 ## COG0477 Permeases of the major facilitator superfamily + Term 50140 - 50189 10.0 - Term 50126 - 50177 11.2 40 25 Tu 1 . - CDS 50180 - 50440 373 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 50467 - 50526 5.6 + Prom 50521 - 50580 3.8 41 26 Op 1 3/0.000 + CDS 50608 - 50922 352 ## COG0607 Rhodanese-related sulfurtransferase 42 26 Op 2 3/0.000 + CDS 50923 - 52572 2096 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 43 26 Op 3 . + CDS 52565 - 52864 452 ## COG0607 Rhodanese-related sulfurtransferase + Term 52877 - 52917 5.1 + Prom 52936 - 52995 10.2 44 27 Op 1 24/0.000 + CDS 53036 - 54202 1579 ## COG0845 Membrane-fusion protein 45 27 Op 2 36/0.000 + CDS 54195 - 54869 353 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 46 27 Op 3 . + CDS 54866 - 56074 1405 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 56093 - 56120 0.1 + Prom 56332 - 56391 9.3 47 28 Op 1 . + CDS 56455 - 56919 450 ## EF2984 transcriptional regulator, putative 48 28 Op 2 . + CDS 56923 - 57120 152 ## EF2984 transcriptional regulator, putative + Prom 57134 - 57193 4.2 49 29 Op 1 . + CDS 57217 - 58665 1743 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 50 29 Op 2 . + CDS 58731 - 59258 590 ## COG0406 Fructose-2,6-bisphosphatase + Term 59262 - 59307 9.1 + Prom 59287 - 59346 7.4 51 30 Op 1 3/0.000 + CDS 59379 - 62192 2091 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 52 30 Op 2 9/0.000 + CDS 62264 - 62665 463 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 53 30 Op 3 13/0.000 + CDS 62685 - 63179 635 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 54 30 Op 4 13/0.000 + CDS 63203 - 63952 1056 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 55 30 Op 5 . + CDS 63952 - 64803 1053 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 56 30 Op 6 . + CDS 64815 - 65166 303 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|308151767|gb|GL476255.1| GENE 1 55 - 1224 832 389 aa, chain + ## HITS:1 COG:lin0833 KEGG:ns NR:ns ## COG: lin0833 COG1479 # Protein_GI_number: 16799907 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 30 305 111 397 489 94 29.0 5e-19 MENWLDLFTIFATKEIGEKVLCNSDEEILNKLQSGEYNLVIDQARYPLNSLSSIFESYNL HPDYQRNKVWDLTRKSKLIESLIINVPIPPIFLYEIDYNKFEVMDGLQRISTIIDFFDDR FKLKDLEIWSELNGKKFSELLPEFQNSIKRRYLSASIVLKESNVEREKENDLKKIVFERL NTGGIKLSQQEIRNALNSGELNDLINKIGDTNDNFLLSWNYPKNLSQIEKDIDRMDNREM VLRFFAYKDSLVNETRKGTRTTLDMYAEKGSKFDRKQTEKLEVYFEKTLELANLLFGTEA FNKKEGTKPEKMIYDTVMLACSKLVDNGNVLEIINNRGKINYHKNNELKNGYFEKHKELF NGKYTSLSKVEERYMNFYLYMVSHIVEGV >gi|308151767|gb|GL476255.1| GENE 2 1227 - 2261 296 344 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256854704|ref|ZP_05560068.1| ## NR: gi|256854704|ref|ZP_05560068.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] # 1 344 1 344 344 620 100.0 1e-176 MYYFNSVLHPLTVLMKTTEDFFENENSNSPLNQAIFERYFFISLYTIWETYTKEIVAKIF VDNEELLNSDEFSFYYYDSIFSSRELKNKLKQDGIRKNLGKIHSEYIFSSNNLWFKRLID IFKVYGFSINSLECYFSNNVQLKESLNDMRGSSIELTDIHQKVGISLENEAQTTYHSIQL YVGYLVDMRNSLAHKYHSPYPKSDPDSMKKLISLFQNIFVCLDKYIKDQIIEKSILNRGL LCFSEELNLLADKKASRNDLNIEVKMKNDIKIGSASTIIFCDQNKNIYNRYKLFKVIKVN DLEFSNEIPIISLDKGNTYQLILKSLSNCGGMKKSRDYSVYLDN >gi|308151767|gb|GL476255.1| GENE 3 2576 - 3964 1702 462 aa, chain - ## HITS:1 COG:BH3820 KEGG:ns NR:ns ## COG: BH3820 COG1301 # Protein_GI_number: 15616382 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus halodurans # 11 441 1 399 413 175 32.0 2e-43 MEKKKREVKGISFTKKMVISLVGGLIVGLGFLFLREHLIRSNQGAVWQTINQILFQDISD PEKGQSAIGLFYIIGQLFINGLQLVIVPMVFTSITLAICHITDTQKLGRISYKTIFGFLS MSLIALLTAGIVGYSVYLTGAFNVSLSETLAPVEVSTSGNPLMVIVNAVTKNIGSAFSDN GAILAVVVLAVITGLCINALGDKIRVFKKLIEEVNAMVTLFLTFVITKFAPIAVFMLLVR TFASYGIDYLKPALVYVVTTTATLLAFLMIGYPLFILFATKLNPVPFIKKIMKVAVFGFS TSSSAATLPLNTKTTVEELGVDSDVAAFVLPLGMTINMNGTAIMQVIAAIFVAGVAGYEV TPANIALIAILALMSSIGTPAAPGAGGIILFTILTGLNYNNEIAIATYSLILAINRPIEM LVTSLNVVGDSATAIYVAHSEDLLDETTYLTDVADLENAEAE >gi|308151767|gb|GL476255.1| GENE 4 4312 - 4821 622 169 aa, chain + ## HITS:1 COG:no KEGG:EF3021 NR:ns ## KEGG: EF3021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 293 99.0 2e-78 MKVTQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALN HSEPLWLSQHWTEKFALDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLD QIKEEQLSDVIDKNWTPPVTRQVRLVSAIDDAVMHSGQAVYTRRLVIGK >gi|308151767|gb|GL476255.1| GENE 5 4959 - 5423 481 154 aa, chain + ## HITS:1 COG:L0142 KEGG:ns NR:ns ## COG: L0142 COG1595 # Protein_GI_number: 15674148 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Lactococcus lactis # 17 154 17 156 164 60 31.0 1e-09 MKKEANFDEVLFSLGQEVIQVLIRRGASLEDAQDAVSQTYTTIFSILPEITSENLRPWFF RVTFNYYITMYRKKKRERTFVANSHPVQSIEKMEGQELLLLIDSLKDEEQELVLLKYYYQ LSYAEIALILELSVENVRKKLYRTRQKLKKELEE >gi|308151767|gb|GL476255.1| GENE 6 5426 - 6352 818 308 aa, chain + ## HITS:1 COG:no KEGG:EF3019 NR:ns ## KEGG: EF3019 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 589 99.0 1e-167 MDLKKSIRKAKRKQFIVIGAITVVSFAVLFVGFFVGMDKLSTKNYHTLLEVINDQEMIAS PNTQLDSQVIANSSPFGGEVVTNRSKNIDGYTVEWSNLRSRYSFFRNSIDWNEVYPGSYY SSKNFYEYNRQTKQKVASFYNPAITNYYGGIKNELSELDKMENQVAEVAISFDKPYPYEE VRKMLPSNVNLVWLYVYSETVNEAEGPSGTLPYGFQLSMDDHNEIFDPENDKQHFFETLE KSPLFADNQEGQKFIQQNKNKKVEKLPIWGVMLTGQTKNFKALQNEPFVRGASIGVTAPI VPYIQPEK >gi|308151767|gb|GL476255.1| GENE 7 6504 - 8285 2066 593 aa, chain + ## HITS:1 COG:no KEGG:EF3018 NR:ns ## KEGG: EF3018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 593 1 593 593 1097 99.0 0 MFFNFIGLTLFFGIGILVANGAKIVANKGKKSKGTILLMAIELLLLGIFLFVTLPSKNLS TVLWINLIGAVIASGVLLSTRLASKVEVPGIPKGRKEVGKNTNKTANKDWSGKILGVAVL AMILLTIVSSITRISSIDEIYQTIPLKTEEKAEVLTSAKETPIAIAPQTAKRKMLQKFSV IPNSNMFTLDGITAQVVNGEYVYVATVEFNGFFKWLKLGEVPGYFIISATDINAQPEFVE KPIVYTPSAYFGKDAARKIYSAYPGYAATGTINLELDDQGNPYYIQTLYKEYGVSGRMHY NEFKTAVLNATTGEVNVYDSQKAPSFVDAPITSSAANSLNEFFGRYSQGWWNQTMFGAKK DVKIPTENGIYASGQITPMMNKEGNQLLYFTDFTSSEKDQDSALGYSLINAQTGQVTYYR DTKVGIMDSDGAISIASKIYPEKKWKASMPVLYNIDGVPTWIVSLMDSKGIFKKYVYINA VDNDIVIDADTAQGALDAYRIELVTKGSNNENTDKANLKTMQGKVARVSVVAGEAQTVVS FLLEDEKTIFSVTTNNSPLALFLKEGDQVTFKAVVTENAKAANVEELKIAGLN >gi|308151767|gb|GL476255.1| GENE 8 8397 - 9137 758 246 aa, chain + ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 238 1 238 263 204 44.0 1e-52 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG QVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNG EMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFL DEVYYK >gi|308151767|gb|GL476255.1| GENE 9 9161 - 10120 798 319 aa, chain + ## HITS:1 COG:DR0508 KEGG:ns NR:ns ## COG: DR0508 COG1715 # Protein_GI_number: 15805535 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 8 316 16 336 336 214 36.0 2e-55 MNKDWKKLKASNEGIPTFESLMPYTLEVLKDGDVLNRKIILKRIIQFLDILDEIASMMYP NYPQGDGILANRFSFAISDLYKAGAVERIKRGMYQITELGLDLLNNYGEKINRKLLEQQP AYQKYMQELVERNNRVGTTTIEASAPIESAKIDIEDMINNQNNQIAIELLNKVRQVEPVF FEKLVIHLLETMGYSGKHGTAVVTSKSNDGGIDGIINQDPLGTSTVYVQAKRYHETNTIG RPAIQGFYGALAAVNADRGVFITTSSFSANAHEFAKNQGIVLIDGIKLTELMLEFGVGVE IAKTYKLFRIDNDYFEDEL >gi|308151767|gb|GL476255.1| GENE 10 10236 - 10619 354 127 aa, chain + ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 2 118 1 117 136 84 37.0 5e-17 MLSLLISVKKLFSSFLGILKKEDTRALFFLLATTLLSGTIFYSTVEKLSPLDSLYLSFMT LTTIGYGDVHPVTDLGKIFTMVYATVGLGIMAMFISVVAKSYLYSKQSHHHHHHKNKEHS AEKSSEK >gi|308151767|gb|GL476255.1| GENE 11 10748 - 12010 1453 420 aa, chain + ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 9 397 14 403 405 366 55.0 1e-101 MVKAIRKLSLIQKIMIGIVIGTTLGFLVPEWTFISVLGELFVGALKAIAPILVFVLIIAS LAQQKAGAKTYVGSILVVYLLATFLAAVVAVTASYLFPVKIVLEAAQEAQAAPTQLSDVL SNVLTSVVQNPIQAMIEGNYLSVLFWSSLIGIGLRQSSVATKDVIANLSTGITTVVQMII GIAPIGILGLVFHSVATTGIAGLAKYGQLLLLLIGTMAVVALVVYPAIVFWNIRQNPYPL VFFVLKESAIPAFFTRSSAANIPINMELAKAMDLNEESYAVSIPLGATINMGGAAITITI MTLAAVHTLGMSVPIYLALLLSIIAAVSACGASGIAGGSLLLIPLACSLFGISNDIAMQV VGVGFIVGVVQDSIETALNSSSDLLFTTSVELADRRKNGESIDVKALIGKSQLVVEQENI >gi|308151767|gb|GL476255.1| GENE 12 12160 - 14712 2536 850 aa, chain + ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 3 837 19 901 908 694 43.0 0 MKWYQLSSTKVIEQTKTKQTGLSSEERQQRLQTNGPNKIEEKQQLKTWQKLAKHFTDLLM VVLLAAAILKFATGEVVEGSIIFLVVLVNGFVGYWQERKAEESLDGLKQMMGQEAVVLID GQKTTVSSETLVLGDVVTLQAGDVVPADLRLFDVHNLMIEESILTGESEAVEKITGSLNE ELPTGDQKNLAFSGTLVQAGSALGVVVETGDSTEVGKINHALQSVDQKTTPLVRKMHQLN KQIFQGIMVLIVFLIFFTTFRHGMEWSLLFSAMIALIVAMIPEGLPAVLTMILSMGVHEM ARENAIIKGMPSVETLGSMTVICSDKTGTLTKNEMTVMDVVTEEMTIVKEIMANCQELKL QDQQKIADLQGNPTELALLQYVDQDQLSLRPVEKKIPFSSSYKYMATRHPQAEGSIIYVK GAPEVLLQLSTLSDNQKGAWQAQAAQLAQKGQRVLGFAYKTVTSQQELTHETLSGLTFAG LAGIIDPPKESAIQAVKESQEAGISVKMITGDHKDTAQAIGEQVGLKHTKKVLEGLEIDA MSDEELAQHVQKVDVFARTTPEHKLRIVTALQNNGEIVGMTGDGVNDAPALKKADVGIAM GIKGSEVTKQAADMVLADDNFHTIAKAVKEGRRIFDNLKKTITFFLPTSLAQGLIVVWAL LMNHPLPLTPVQILWVNMVTTITLSYALGFEKASADTMKRPPRDVNEGILTKYSIFRIVY VSVLIMVPGYLMALQFEGQALQQTFLLQSIVLAQAAYMINCRKLVDPSLSTGFFQNKVLF ASLGILFLLQALVVYWPVAQQLIGTTSLNGLQLAMIFVHVVSLFFLVEGEKYITKRFMTK ESQKTSECPR >gi|308151767|gb|GL476255.1| GENE 13 14718 - 16166 1094 482 aa, chain - ## HITS:1 COG:no KEGG:EF3013 NR:ns ## KEGG: EF3013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 818 98.0 0 MYSMLKRVITEKDLLRQIRLLEQLLNVPQLTANRLAAQIQTTERTVFSDLQYIRSQLPAD WSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYE TLKRHIKKMNQALRDFHLMIQLTTTTIQLIGEESNIRIFYHRLLVPFTHNNYFFDDYSIH EEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPS LAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNL STEEARPDLIQTNLLDNLLLLFIKYTESPTLSEQFQLEYQELMTEQAAEDLALSKSNQEL LEILSRYTTIEEPTYFLSLASLLEKQASYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYL GTRVKLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFYLSLIPTKNELRRLAELTLHS YF >gi|308151767|gb|GL476255.1| GENE 14 16258 - 17439 822 393 aa, chain - ## HITS:1 COG:no KEGG:EF3012 NR:ns ## KEGG: EF3012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 393 1 393 393 704 98.0 0 MKNKSINYEAVLALVVKIFLGMFLYWIMNGFRHVSNFFPYNDVVTKVNQQGFYKFIYFVM NFTEGEFYGGLFTTLFLLIGGLIAWQLYRKNSKWQGFAIAGGSGAWPWVLASQLLSLFLT IYVFDFTRFFTKEVLWLPTFIVVVGTPPALTLVYGPGWKKLGTISLLSALFTFPFANWLN AQLMPLLNVPGTVSNVTTMAFVGWIVSAICHQLPWMVPSVAPIAQKRQKQPKIENTQTFQ WSIRRTFADFSEAWFYGNELVGGLVILGVLTDWFVNINHITNGSGLVPDILMGQMIASAV GVFLYRKHFAEEGWYPTFMPLVSIVPGVILMMGGGFWLSLTIAVLAGISAAPVGSYIAKR LPPFVPGAVGFVSGMAVVTILLSAVLHTFDIFV >gi|308151767|gb|GL476255.1| GENE 15 17483 - 18907 1725 474 aa, chain - ## HITS:1 COG:no KEGG:EF3011 NR:ns ## KEGG: EF3011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 956 98.0 0 MSRNDLFKQPLDTINVGIDFIHEDMKKQGIPSHQVNWAPPANGDPELLKLLDQLKNPTLY EKIQQANEEAVTRIIQSKPILVGFDKAINVMPDMTEKTILHAGPPITYENMCGPMKGAVQ GALVFEGLAKDLADADRVARSGAITFSPCHEHDAVGSMAGVTSPNMYVHIIKNETYGNTA FTNLSEQLAKVLRFGANDQSVVDRLIWMRDVLGPLLHDAMTFCPEGIDLRLMLSQALHMG DECHNRNVAGSTLLVQALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWMGAAKCALDA GHNVENSTIVTTMCRNGIEFGIRVSGIGGNHWFTGPAQRVIGPMFAGYTQEDAGLDMGDS AITETYGVGGFAMAAAPAIVPLVGGTVAEALNYSKEMLEITTKENPNVTIPVLDFMGIPS GIDVLKVLETGMLPVINTAIAHKEPGIGMIGAGLTNPPTNVFNEALKALVAKIN >gi|308151767|gb|GL476255.1| GENE 16 18894 - 20453 1835 519 aa, chain - ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 515 1 514 515 513 52.0 1e-145 MTIQTVIKENAYFDSVTLMTISTRANELAGVKTAMIGMGTDMNLEVIRNVGLYTPALDHV TTGDLLIVLDLDDQANSEEILQQVDELFTKKKKTASSEVTYKTLDSALHEEPDANLVVIS VNGKFAAREAHKALDQQKHVMLFSDNVTVDEELALKQKAHEKELFVMGPDCGTAIINGVG LCFANEVRSGDIGIVGASGTGSQEVNVQIHKYGYGISQLIGTGGRDLSAEIGGLMMLDGL DALMADKQTKAILLISKPPAPEVTEKILKKLAVSTKPVVIYFIGNEQTERKIDNVTFATS SLDAVQKVIQFSQTQQAETSLYQNPTGTTLTAIQQQQAPSQKFVRGLFCGGTLCDELLYA LTEVSDDVYSNIHKIPERQLANPDHSQAHTLIDFGDDRFTEGRPHPMIDPTSRITRILQE AKDPEVAVLALDFELGYGSHENPVGVLAEALKEAKAIAKADGRELAIIGYVLGTEEDPQD IHEQRKILEDLEVLVVDSSHQLCEATKTFVKGANEHEQK >gi|308151767|gb|GL476255.1| GENE 17 20431 - 21297 595 288 aa, chain - ## HITS:1 COG:no KEGG:EF3009 NR:ns ## KEGG: EF3009 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 288 288 556 99.0 1e-157 MTKILAYDQTILSKLPHQTLTSLQCFTHAINYGHVDTQEILLTISTHPEHIAPNTIILDE KKLSHFADLPVQIEPLFIRLGRRQLTLADAQIWQPTPLYLTPSKTKIAIFLTYIQQTRFN PWQALFPASPSTFLFDSYSRTQIQKEMIHFQQAWEQKSFKIALDCLTKILGLGIGLTPTG DDFITGLLASFSALQQLPSNFQQLAVLAKERTNAVSYAEIHEAVNERFSQLVQRVFLSIE SGNTNEMAQAVSALEEVGSTSGSDILCGIIFGLKLFCEENNHDNSNSN >gi|308151767|gb|GL476255.1| GENE 18 21428 - 23098 1358 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 550 1 527 531 122 23.0 2e-27 MLKVSDLLTLEELPGITLVAGHKNQDQPILKVNILENPDILDWLTAGELLLTTGYIFKDD RKLQKNFLKELAKHHCAALGFKTQRYFEEVPPDLIKLADEMNVPILAIPYNYTFSQIADV LKSRVTLEQFDMNAQETALHNKIYQILETGSSSFHLLQDLAETIQNPVLLLNDHFEGVNF FDLPKNPIRISSILEDRKETSEFQKQLLEQSHPSLRFYQEPIHLQLKLQNQVVPIEIYPI KKKNVILYYLLVWNTLAPLRPVDVAHFKITAHYLLLQLQLEYSRKFEEYQQRNELFFKLI AHEKRDQAVFQQFQQYYRLAIDKPYAILLISLTLNERQRQERMSILGNQLNQVILGDKQK IVCIEIDSSFVLLVEDPPEKEGDYLKMMQRLAQSSINQLMKVQEDVELFLTIGPKIQGLT QIHESYQQAIDVLAFQRQFVAEKPEMRIASYANFHLRQTLQRYFLAEGQATLRKKYLQPL QKSDQQQHTDFVHTLNVYFQSKRNLSQTAKKLFIHRNTLLQRLEKIEQLVLLDFDKEVDL LALEVALFLKDKRSTL >gi|308151767|gb|GL476255.1| GENE 19 23132 - 24037 1018 301 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0521 NR:ns ## KEGG: SPCG_0521 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 254 13 268 271 254 49.0 4e-66 MEEEVLALKVVNESLKLPSVKVNRNAFLTKMFQDKVDNVQELFDDGPEKVLSKKELDRAA QKCINQAVMQSSAISFATGIPGGLAMAATIPADIAQFYGYSLKLAQEISYIYGYHDLWNN QDELTEEAKNTLILYLGIMLGVTSAGSVVRILSNRLSIQALKRLPQKALTKTFLFPILKK ILAVFGTKLTKATFAKGVSKAIPVLGGVVSGGINYASMKPMAMRLKDELSKNIGYTQEDA EKDLEILEADFEVISEQPETETTKHADDIFSKLERAHALFEKKILTEAEYIKLKETIIQE G >gi|308151767|gb|GL476255.1| GENE 20 24205 - 25794 1551 529 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 5 521 8 522 526 566 56.0 1e-161 MGAELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTP TKQTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFV YLSSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAHEGDVIGDAYEF LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQEDKKLFSVFDPTMGSGSLMLNVRNYL NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDMNLRNGDTLNKDWPTDEPYTFDSVVM NPPYSAKWSADASFLDDSRFNRYGKLAPKSKADFAFLLHGYYHLKDSGTMAIVLPHGVLF RGAAEGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIILKKNRDNRDVLFIDASKEFT KGKNQNKLATEHIDKIVSTYIERQDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPV DLVALNNEIKSTNQEIKKVEAELLAMLDDLVVTEETQALIDATKEVFGG >gi|308151767|gb|GL476255.1| GENE 21 25803 - 27044 570 413 aa, chain + ## HITS:1 COG:lin0523 KEGG:ns NR:ns ## COG: lin0523 COG0732 # Protein_GI_number: 16799598 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Listeria innocua # 2 413 6 397 397 145 29.0 1e-34 MKKVPRLRFRGFQEDWELCKLGDVADHFEYGLNASAIEYDGKNKYLRITDIDDSSRKFIQ NKLTSPNINVEEASNYILTVGDILFARTGASVGKTYRYDIKDGKVYFAGFLIRARIKDSF DSEFVYWTTLTDRYNTFIKIMSQRSGQPGINAKEYSSFNILIPNIKEQQKIGAFLKKIDD TIALHQRKLEQLKELKKAYLQLMFASTNTKNDKLPKLRFTGFKGYWELCKLSDISDKVKE KNKHGKFTETLTNSAEYGIINQRVFFDKDISNVNNLNSYYVVQNDDFVYNPRISNFAPVG PIKRNRLGRTGVMSPLYYVFRTHSIDNNYLEKYFDTVYWHHFMELNGDTGARADRFAIKD SIFVEMPIPYPSTEEQQKIGIFFKKLDQSITLYKNKLNQLKALKKAYLQNMFI >gi|308151767|gb|GL476255.1| GENE 22 27167 - 27658 504 163 aa, chain + ## HITS:1 COG:no KEGG:MYPU_3700 NR:ns ## KEGG: MYPU_3700 # Name: not_defined # Def: hypothetical protein # Organism: M.pulmonis # Pathway: not_defined # 7 133 11 140 292 100 43.0 3e-20 MANSLQEEYQKLVKMNYPELVTYLNNKYGPVPGSYFRTPTCKSKNSKITRSMEGLEVHHV GEDNYPNLSDIKYALTAPWEEQLPDRLVYCNLLEHTLLHTLISEKHGTLQPYFSFKADLI RDIINDYEFKREWLKVVYSQMKDNKELLIELYDRVNAKSLLNL >gi|308151767|gb|GL476255.1| GENE 23 27694 - 28623 734 309 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 309 1 309 309 489 81.0 1e-138 MVKRKRTEQLFHEYFSEWVELYKVGAIRDISLQKYYIAEQWLAELAPGLKVKHLDRQRYQ QLLNDYALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKFLNQ FEVQALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKN PTGFFQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINNRLKVLCK RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQELENQDNDK IMRHLAMLM >gi|308151767|gb|GL476255.1| GENE 24 28707 - 29864 784 385 aa, chain - ## HITS:1 COG:lin0525 KEGG:ns NR:ns ## COG: lin0525 COG0732 # Protein_GI_number: 16799600 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Listeria innocua # 89 385 109 401 401 136 32.0 9e-32 MASFSKGNGYSKADLIEEGHPLILYGRLYTKYETIIESVDTFAKLQDKSILSKGGEVIVP SSGESAEDISRASVVDVAGVVLGGDLNIIKTNSELNPTFLALTISNGSQQKEMSKRAQGK SIVHLHNSDLKEINLLYPKIEEQIYIGLFFKKLEDTINLHQRKLDQLKELKKAYLQVMFP VKDERAPKLRFADFEGEWEQCKLEDYATYRRGSFPQPYGNKKWYDGENAMPFVQVIDVTE QLSLVKDTKQKISKLAQSKSVFVSAGKVVVTLQGSIGRVAITQYNSYIDRTLLVFESYEK ETDEYFWAYTIQQKFEIEKRKAPGGTIKTITKEALSSFEVNFPEYEEQQKNGNFLKNLDN ILTLDQKKLDQLKSLKKSYLQNMFI >gi|308151767|gb|GL476255.1| GENE 25 29980 - 33123 3313 1047 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 8 1043 8 990 992 553 36.0 1e-157 MKLSVNDEATVENKLIAILGEDRNQWTYRADLKSEQDLWRNLREKIIQNNLAAIGEHPLT DQEFERIKTGLLERTRTPFEAAKWLKGENGIAKITIEREDASLGTMSLILYSNRDIGGGI SSYEVVNQIAKKNTNSAKHDSRFDVTLLINGLPIVQIELKQVTAKDGVFQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPQFMHKKFLFSWRTKDNKKVENLYEFCRQV LNIPDAHRLIADYTIVSEEQDNKVLMVLHPYQIHAIEALYVAASKHTSGYIWHATGSGKT LTSFVSTKLLARKPGIDRTIMLLDRKDLDNQTTSEFTKFASEFNTGISSGDGKANSLIVG TGSAKELSKTLLADANSNVVIVTTRQKLDAALKYARKQEEQKGTNRFQKLMGQHIVFIVD ECHRAVSAENMMDVKKVFPRSTWFGFTGTPIFEENKKQAQGQLARTTHDQYGEVLHTYTI KNALEDKAVLGFQVEHEDTIDSESLYKKIYDGLSNETKYAEYTPEELANEVEAMDNIQKE KMLDRSIYENDKHIQEVIHKMFRPNNAYTKFDFGNGRPRKSAILTTSSIDMAKRYYHAIK KMTAKENWLEKEFPKHQIRQGRTMEDPDFPRIAITYSLEENAENSSAQQDELAKIMAEYN AYYGTSWTLQDIERYNGDINNRLARKKAEFKEFGRHVDLVIVVDRLLTGFDAPTIQTLFV DRNLEYANLIQAFSRTNRTYPDKTKGLVVTFRKPHTMEQNVANATRLYSEAKEESGLIYP TYKESKQRFKKAFRKMQEFNPEEIDENQPIDVRIDYVQSFQALSNSYEALVTYDEYNDEM EKSPALAEQVHLIEEQIGTYETIKGSLVKVEPGPDKDFSEIEFYSDNHAKMYDIDSSYID QLLGNYSANSQGVREEIEKALQKLNKTECVKEVYREILNAMDNEKVDQKEDVFVLKRRYF TGTRNQVIAQFAQEWFVSEDQLHSSAIQYMIGMNPIPNMGDIISSKDFESYKATHPEAKP FKYPQQMKRAWRQTLDEYLVPLEDELR >gi|308151767|gb|GL476255.1| GENE 26 33335 - 34408 569 357 aa, chain + ## HITS:1 COG:no KEGG:EF3007 NR:ns ## KEGG: EF3007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 357 1 357 357 611 96.0 1e-173 MKWPILYYFVLCVLGALVLSYLKKRFGQVPQTAHEALTELKAKQSVDYSGVFRNLLAALV ILIFGAGVGPEAALLGAIISLSVWQSDKLRYLYFHYDEQEQQVFWTKIQRLLHPQQFVQH YDKMLAPVDKKKLKQVMNGLFIVNGLVVFTFLMKLVGHPSFITKLGTGKIEMASLWLILP ALLTAFVIGNAYRWLKAALAKICQPFEGKQSILVSLGAACIFLFVILMPRLLFSGQSFMH LVPSFGSQQAWYILVIAAIMKLVFLQVCLHTGWIGGDIFPVVFSAILIGFAVAQFFPTID SLFVVAIFATSLTSQILGTILVPGIFVGLFFPITLWPIVVLVLFLQWLLKNKIIKSN >gi|308151767|gb|GL476255.1| GENE 27 34433 - 35089 573 218 aa, chain + ## HITS:1 COG:no KEGG:EF3006 NR:ns ## KEGG: EF3006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 218 1 218 218 387 99.0 1e-106 MNLTHQDFNLFNREIFTFKQLKEQQTSAEIDDLKQTYKQHWEKWKALNLAIAQGLPAELG ITKPKIESWTNGWNLRSHFWAAYRSEQRQAENACLALLLNKKQFQVYLMFQHYKSEERAG SVVAYNQLLNRLEAWSQTIDCEGYYIWPQEEHELVDHLPLKDYLADEKQRKILEERIGNR SFQIGKLWFATEKLETIEEKSCQALQELAPLYNALSEK >gi|308151767|gb|GL476255.1| GENE 28 35141 - 36208 1130 355 aa, chain - ## HITS:1 COG:BMEI0543 KEGG:ns NR:ns ## COG: BMEI0543 COG3049 # Protein_GI_number: 17986826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Brucella melitensis # 2 320 37 329 367 124 30.0 3e-28 MCTGIKIISKTNDIFYGRTMDFTFDFFGNEDPIAPKIPTLIAQFPKGTVLNSQLNPWTAK YSFMGLAMSGTDQPANDGKTVSLAITDGINEAGLSGDIQYLMESSTAPAESLADRGLTPH IAEEVLAYILSNFESVDEVKVAFEKIGLLDQKFQLDSLGEVHFTLHWTINDKNNNSIVLQ PTDNGAFVIYDSIGVVTNSPEYNYHLTNARNYIGMRNYAIKEPYTLKSGATLDPIEGGTS YGLLGIPGDFTSPSRFIRALYYSDNLQEFDSSEGIMQLYRAFQTVMIPRGIGHLGQSNSL SDFTHYWSGYDVTNLTMYVQPESTTSFTKYTLDPALTEVTTFAVSNELLLTDLNQ >gi|308151767|gb|GL476255.1| GENE 29 36427 - 38046 1498 539 aa, chain + ## HITS:1 COG:L1004 KEGG:ns NR:ns ## COG: L1004 COG0659 # Protein_GI_number: 15672032 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Lactococcus lactis # 81 531 1 452 460 400 49.0 1e-111 MFKKYTQMIRDEFKGYNQKKLKKDFLAGLTVAAVALPLALAFGVSSGATAAAGMITAIIA GIVIGSLSGGFYQISGPTGAMAAILMSIAAVHGMQGILLATFLAGIFLLLAGILRLGSLT SFIPSPVITGFTSGIAIIIALGQLDNFFGVRSEGHNLIEKISSYRSLGFDLSIPTTVMSI LVVLGLVFFPKKWNAMIPASLVMIILATLATVVFQLPVATVGKIPTSIFSDTRLELGSLQ LSAFQDILVPSTSIAMLGMIESLLCGASAGRMTGKPLDSNQELVAQGIGNLILPFFGGVP ATAAIARTSVVIKSGAQTRLAGIFHAVFLLLSMLLLSPVMSKIPMPALAGVLVVTAWRMN EWSVIKEFFQKRFHTALCLFFLTMVATVIFDLSLAIVLGVLAGCLFFIAKSAVITINVEE VDWSRMGLVPTDCTENWVVVYLSGPLFFMSSERLKQTLLQLETKSGVVFSMRGVPSIDST ALDILEEFCLAAEGRGQQVQFAALQPEVEKMIRTIQGNQEKEYHFSVAEFLQTVHVAEQ >gi|308151767|gb|GL476255.1| GENE 30 38118 - 38810 428 230 aa, chain - ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 306 95.0 4e-82 MKKLFCVILVIFLTGCSSQKANEPKEQENSTNHTTSMKSSTNHYSSSTETSSNNKLKETS ESVSTTQASAKSKNEVSTNVEETNSLEATPYAVDLSSLNNPLVFNFKGMNVPTSITLENL NSTPTATFRTKLFRAENDQVKEAINKYELSINTIPTKEIRIFSAADNSIRTVKVNTELIL GTNISSNDEQNRSGTLYLFSNKNGSISLITPNYAGNVTDDQKDVMLEVIQ >gi|308151767|gb|GL476255.1| GENE 31 39003 - 39455 614 150 aa, chain + ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 196 72.0 1e-50 MIDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRICENPGIIQEKIAELIKVDRTT AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVE ISQLAEYLVRMRKNVSEDWEFVKKGNTRNY >gi|308151767|gb|GL476255.1| GENE 32 39474 - 39986 650 170 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 170 4 171 172 166 51.0 1e-41 MGEIKQLTIEDAPALQEISIETYTDTFGPYNTPENMQAYLVEAYNLEKLQKELANPHSDF YFIFVDNQLAGYMKLNRETAQTEPMGPEKLEVERLYILPAFKGKKLGTQLLELAEEKARE FGKKALWLGVWEHNDAARAFYKTIGYRYYSQHSFFMGDDEQTDFILLKEL >gi|308151767|gb|GL476255.1| GENE 33 40581 - 42077 1553 498 aa, chain + ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 11 473 3 462 463 446 53.0 1e-125 MEKNVSQVTAQEETALKARGYNEDLLPSSPKQRTMSARNFFTLWMGSIHNIPNYAAVGGF IFLGLSPLQVMLAVVLSSFIVATFMNLNGVAGSKYGIPFAMHLQSTYGSLGAKLPGFLRG CVAAIAWFGLQTFTGSLALLIILGKFWPNFLEIGGSFQFFGLRLPELMAFTLFWLLNVAI GFGGSKILNRFTAILSPLIYVVIIGLTIWAIRAGGGLTPILSYQVSGAIRSVNPLVAYLI IFNSVVAVWSAPGASVADFTKNARSTRAQVVGQTAGLVVGYGIFAFSSVVILLGGSLYFG IQEWNILNIIDRLDNVAVVVLAMSVFLLTTISTNATGNIIPAGYQLAALFPKKMTYKKGV MIASVISFLIMPWKLMENADSIFIFLNAIGAVLGPVAGVMIANYYFVQKQQIDLNALYVD KHKKEEVNPFYGLNKPAYVATILALVLSLSGQFIPQVKIIADISWFVGFATGFVLYLVLK KWTWDSKKVKETAYQEGK >gi|308151767|gb|GL476255.1| GENE 34 42078 - 43442 1485 454 aa, chain + ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 452 1 448 453 512 54.0 1e-145 MQAELVIKNGLVILETGEVITDVAVQGGKIVAIGQDLSGERVIDATGLVVSPGMVDAHVH ITDPGGGYRDEWEGYVTGTAACAKGGVTTFMEMPLNQIPATVDKTSLEIKYKAGENKLKV DVGSFGGVVPTNLAGGIQELDEGGVSGYKCFLGTCGDRSIEGDFQNVDDYSLYEGMKQVA KTGKVLAIHAENAPITDKLGAVAYQNGETTLAAYVATRPVFTEVEAIQKAILFAKETGCR IHICHVACQEGVEEVLKAQAEGVDVTCETCTHYLYFTTDELDAIGPVVKCSPPIRDADQQ AALWNHVQTGGIAFVTSDHSPCTPDLKDTTNAFEAWGGISGVQNNVDVLFDEAVQKRGLS LKQFADMIAANPADRYHLAQKGRISIGKDADFVLIKPNAPYILKAEDLEYRNKISPYIGR EIGAQVIQTILRGETIYAQETGVTEAFNGVFIKN >gi|308151767|gb|GL476255.1| GENE 35 43624 - 44847 1301 407 aa, chain + ## HITS:1 COG:ECs0578 KEGG:ns NR:ns ## COG: ECs0578 COG0624 # Protein_GI_number: 15829832 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 7 407 5 410 411 506 59.0 1e-143 MDLEKVLKQRIEELSAIGSDPAGGMTRLLYTDSWLAAQKYVQSQTEAFELETQFDEVGNL FCRVAGTEFPQETILTGSHIDTVVNGGTLDGQYGVIASMTAVQYLLDKYGKPRRSLEVLS MAEEEGSRFPTVFWGSKNVVGEAKREEVVDISDNEGKKFVDEMHRQGFDFRQEQTRREDI EAFVEIHIEQGNILENEKLQVGVVHSIVGQRRYTVNLKGQANHAGTTPMSYRHDAVYGFA KICAEAIDRANEIGDPLVLTFGKVIPKPNTVNVVPGEVEFTIDCRHTDAAFLRHFTGELE ERMKTIAQELGLTIAIDRWMDEAPVPMNQAIVEVIEQKAKEGKYQYRMMHSGAGHDSQII APHYPTAMIFVPSIGGISHNPAEATAFPDLVEGVKLLADTLYELAYK >gi|308151767|gb|GL476255.1| GENE 36 44869 - 45654 987 261 aa, chain + ## HITS:1 COG:STM0526 KEGG:ns NR:ns ## COG: STM0526 COG3257 # Protein_GI_number: 16763906 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Salmonella typhimurium LT2 # 1 258 1 258 261 296 58.0 3e-80 MGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFV DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLA NAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMN MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA VGREEPLMYVYSKDANREPEL >gi|308151767|gb|GL476255.1| GENE 37 45772 - 47397 1387 541 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 538 1 526 531 183 24.0 8e-46 MKILAEVLALPRFSDLQLLSSHSNLTQPLESVEITETPDVADFIPKNVMILTTAMIYKDD QEKLKPFIDSLKQAECTALGIKVGRFLDEISPEIVAYASAVDLPLIKIPSTQPLGGLLHE IVGYLRDSKTEQMSAAFDIQKRFSTLLMQDVDATRFIAEFAKILNAPIILLSPWQQVIAH SNYFYGNQKSAEFFIEQLSKDHFQQLAQEKKIFRLQDERQENIQVAGFPIRVNDYFPYYL LVLSPEQIPYPISEFAIDQAILVLTFMLFKNQKIAESFEHLKTDFLDRLLDTHQEALSKH QNWLELWKNYRLINSDYYQLAIVYGVTKPENETHIRYQQAEGQLIFQWLKEQLPEILPDV ALFKLKNQNKSILIFQSKKNDHLMILQNLAERLQQALPITIRFALGNAYENLEDLPNSYI EASSTLEASLHAQKPATVQLFHPKGLAGLFEKIGTEDVEYFCQQQLKELAYPTEPTLQEL RKTLKVFLDFNCEITKTANALYLHRNTIKYRMNQCEKLLGTSIQEPETSLLLRVALELSG K >gi|308151767|gb|GL476255.1| GENE 38 47569 - 48777 1362 402 aa, chain + ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 10 402 12 409 416 435 54.0 1e-122 MYQQPNFVRRTIMTPGPVEAHPSVLRQMGQPILGQFDPEFLQIMDEVREMIKVPFATKNQ QAFAIDGTSRSGLEAGLFALIEPGDKVLVPAYGRFAYLLGEICERARAEVIYLEKDWLAP FEQTTVIEAIKEHQPKIVAMVHGETANAQMQPLDQIGAFCRENEIFFVVDMVATYGGVET KVDDWKIDIAVAGTQKCVSVPSGLSLITYNQRVADYLAGRYQKELGLGADARNERFIQSN YLDLSQLEKYWGPERLNHHTEATTMIYGLHEGLRLLLQEGMENVYARHRKNDRILVESLQ KMGLEIFGKLDTKTPTVIPVVIPEGIDGEKVRSLLLDHFKVEIASSFGDLKGKIWRVGNM GYSSREDNVLHFLSAFETVLKHQGYQFEGGSGSTHALAEYLN >gi|308151767|gb|GL476255.1| GENE 39 48875 - 50134 1509 419 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 414 1 408 415 377 49.0 1e-104 MTDKTKSSLAYWKKIVILLCMGWVTIWIYRSALSPVYPQIRASLNGNASDTALGSISSFY FLGYVVMQIPAGFLVDKIGKKRVLIPGFILFALAALLIAQAQTIGTIYLGSLLAGLGCGS FYGSAYSLTSQNIPQAKKSFATAIVNSGSAVGSGLGMILSSYLVAQKGLPWQVMMYISAF MIICMLVAFQVIIRNHKEDMALIQPTVVDEKDNGAVKEKVPFKKLFAPHMLFAYILYFGT CYAYYMIVTWLPNFLSTERGFQGAAIGLSSSLVAFASIPGALFFSRLADKYMHKKVQFIV VLEFLATAMLLLTVQVSNATLLLIALIMYGFLGKLAVEPIIISWLGENAPKIGIGTTLGV FNFFGMMSSVIAPALTGKISDTTGSKVMGFYIAVVILLIGTILFMLVNLKKRGADSSNK >gi|308151767|gb|GL476255.1| GENE 40 50180 - 50440 373 86 aa, chain - ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 85 5 84 86 67 46.0 5e-12 MTEEKKKVLNRLRRTEGQIRGIQKMIDEEKECIDVITQLSAVRSSIDRVMGMIVAENLKH CFENPEKDPKEQEERLAQAINMIVKK >gi|308151767|gb|GL476255.1| GENE 41 50608 - 50922 352 104 aa, chain + ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 2 101 1 101 102 92 51.0 3e-19 MLFQLFKKKPSISTKELQSRLSKEITLLDVRTPSEYRAGHIPQAINVPLNKIPAYNKSAN EVYVICQSGMRSKNAAKILARKNYHVINVRGGMSQWSGQIKGGK >gi|308151767|gb|GL476255.1| GENE 42 50923 - 52572 2096 549 aa, chain + ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 456 456 584 66.0 1e-166 MKIVIIGGVAGGMSAATRLRRLMEDAEIVVMEKGPFVSFANCGLPYYVSGEIAEREQLLV QTPEALKARFNLDVRPHHEVVAIDPIEKVITVKHETEILTEHYDKLILSPGAKPFVPPIT GLAEAKNVFSLRNVPDLDQIMTALTPETKRAVVIGAGFIGLEMAENLQKRGLEVTLVEKA PHVLPPLDEEMAAFVKAELSKNNVQVITGQSAVAFEEEGQVIRLEDGQTLDSDLTILSVG VQPENTLAVEAGVATGLRGGIVVDERYQTNQPDIYAVGDAIVVKQQITQEDALISLASPA NRQGRQVADVIAGLERKNQGSIGTAIVRVFDLTAASTGLSERAAKAAGLTTAVVHISGKD HAGYYPGATDLQLKLVFHPTTGEIYGAQGIGVKGVDKRIDILATAIKGQLTIFDLPELEF TYAPPFSSAKDPVNMLGYAAMNLAEGLSENVQWYELSNELANGAVLLDVRNPAERANGQF KNAVSIPLNELRERLEELDKSTEYIVSCHSGLRSYIAERMLKQAGISAKNLDGAFALYRM VKPEELENV >gi|308151767|gb|GL476255.1| GENE 43 52565 - 52864 452 99 aa, chain + ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 1 99 1 99 99 89 41.0 2e-18 MYNTIGMPEFYQEAKRKKLPIIDVREEMEYQLGHVPQAINLPLSTLTENYQQLDKNQPYY LICQMGSRSAQACAFLSQQGYQVTNVLGGTSGWLGQLEQ >gi|308151767|gb|GL476255.1| GENE 44 53036 - 54202 1579 388 aa, chain + ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 11 383 2 376 377 90 27.0 7e-18 MKKSGQKKRNKKVWFGIGAAVVVVGFIGAKTVFSSKEVEPEYTTYTITEMASLKLDGQVS FLDTRDIFFDPSLGKIAEINVENGKEVKKDSPLLTYNNSDIQATETEQANAVNRNNLQVQ QAQENVNLATQKYNEALNKVAAAKQKLNTAKEAEEKETLNAEIQQLNEAVSAANSEVAQA NQALQLANSDAVGAANTLEQTRGKVNTVVTAPIDGQVTVDASAMSSTDKPVIKIATQKKN IQGKVTEYDYDKLQTGEEVTVTTVGSGKSAPGKIVSIAQTPIAKNEGNPVVSYQFTVEGD FPWAEGLSTSIAVPQKQMIIPTAAIQKEGEKEFVYVYKAGKAKKTPIETETNLGRKVVKS GLNWKDQVIANPNKELKDNQDVQVAAND >gi|308151767|gb|GL476255.1| GENE 45 54195 - 54869 353 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 220 245 140 36 2e-32 MIKLSHIHKYYYSEEETLHVLDDINLQVDAGEFLAIMGPSGSGKSTLINLLGFIDKKFEG TYLFEDREIGDFSDKELSRIRNEAVGFVFQNFSLIETLTVEENIELPLLYSGLTPKEAKD RVHEVLTKVGLPDKGKKHPKQLSGGQQQRVAIARAIVNRPSFIIADEPTGALDSKTSEEI LTLFQQLNNEGVTIILVTHDEETIEYCNRLIKVRDGKILEEVLT >gi|308151767|gb|GL476255.1| GENE 46 54866 - 56074 1405 402 aa, chain + ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 6 402 7 392 392 187 34.0 3e-47 MKRSIIWKTAFRSILKNKRRSLLTMLGIVIGIASVITIVAIGNGFKEDMVDKLSAEKQKE NVKKISFSAYNTSDMFSDQAMFTDNDLGVVRMVPGVEKIDFDQREVDGAQKGTLNFQAGP KNLSVTYELADKTTKELLAGRQLNDGDNAKLDKTVVVDELVAKELYQDPTAAVNRTFPYK EQLFTIVGVTTNTSGAIGLGNDDSLLYFPKKTYEHYFGKLKDTSTLKLTVAPGYQPDQVL KETIKTLSQQGTMKNSGTYQEYNVKDTIKEMGSLLNNLTLFISAIAAISLVIAGVGVMNM MYISVSERIKEIGIRRALGGTASDIKKQFLTEGIALTLIGGITGYLLGMIIAYLASMALP FSVRPDLMTVSLAIGISVFIGVVFSYFPASAASKKDLIDIMK >gi|308151767|gb|GL476255.1| GENE 47 56455 - 56919 450 154 aa, chain + ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 221 283 100.0 1e-75 MKIMVITKNILSETAFQNRLQHLDHQVFCTTCLIGEIKESHLFYRKFDAIILSETIPRKE QYLYLKELARVKTPLFLRSEDIPTSEELSISYQYGILNWLRLDATLDTLRENLLLAELNK PIQREDEKLDVEGIKLTAAERALLAVLYSTPKEH >gi|308151767|gb|GL476255.1| GENE 48 56923 - 57120 152 65 aa, chain + ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 65 157 221 221 124 100.0 2e-27 MERLCKLIYDTEETANNRKKMTKQLTKLNKKIQVGGFKKQGIQNTRYKGYKLHPQLLPYI GELFT >gi|308151767|gb|GL476255.1| GENE 49 57217 - 58665 1743 482 aa, chain + ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 1 482 4 499 499 377 44.0 1e-104 MKDGLYWVQQLKEQKVSRTELLKDIEKKVQKLNPKLNGFVTFDSQKAEATYQKNKQQDTL FAGLPFPLKMLGQEKAGWSATAGSQLFKNSTATTTSNFVKQAETIGLMPLGQTNAPEFGF KNITDPALYGPARNPWNLEHSPGGSSGGAAAVVASGIVPIAGASDGGGSIRIPASFSGLI GLKPSRGSMPVGPEGWRGWQGASIDFALTISMRDTKALFYGLRGSHSGAPYQAPLAEWQT HPKKQRLKIALCTASPIGSMISPEATQAAKQAADFLAAAGHEIIEIPYPVDGAALIRSYY QMNGAETTAMMNSIQQGLGRPIRKEEIEPFSWTMHQFGQKIPAATYVHSLQLWDQAAVTM EELFQKFDLFLSPTTAFSAPKINEDLQSEHIRQRMEQAAELTEAELAELIYDYFDKSLQL TPYTQLANLTGQPAISLPTHVTATGLPLGIQLLAARGREDLLFQVGEQFEQEGKFKLPES YR >gi|308151767|gb|GL476255.1| GENE 50 58731 - 59258 590 175 aa, chain + ## HITS:1 COG:YPO0455 KEGG:ns NR:ns ## COG: YPO0455 COG0406 # Protein_GI_number: 16120784 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Yersinia pestis # 2 130 4 137 215 96 38.0 2e-20 MLYVVRHGETDYNVARRICGHAEAQLTEKGYQQAELVAEKIAKQGIQIDRLLASPLKRAQ ETARKIAERNQLTIETEPRLIEMNFGIYDGEPIETTAFQENRSEISLPFPEGESVLDVAG RIYPLIEEALASEETYLFVCHNAVMRVIDNYFNGKKIQDFLDFHCENTQLVQYGE >gi|308151767|gb|GL476255.1| GENE 51 59379 - 62192 2091 937 aa, chain + ## HITS:1 COG:STM3773_1 KEGG:ns NR:ns ## COG: STM3773_1 COG1221 # Protein_GI_number: 16767057 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 28 462 30 458 460 289 36.0 2e-77 MRIDNIHQALKQFHVQNPSSKETLLPATASQLSQTSGYTRTAVSEELSELVRKDQVVKVK SRPVLFFDKDYLEEQFPFFKSSTCYDSLASLQEDIYQQTEQIHKKKQLLKMNPFANVIGF DGSLADAIKKLKAAILYPPNGLNILLTGESGVGKTLIAEQLHQFYQVKMNQEVPFIYFNC AEYFNNPELLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTV LDKGYFTRMGEAEKQRNVSIKFIFATTEAVNQHFLKTFLRRIPVTLAIPALAERSLKEKI QLILSFFLEESQRIQKNIHIRYEALKQLTFTHFEANVGELKAAIQFMSAQAYLEVFDQLT ETICIEANEGTVKEQPDVESLLAFNEWIPNDGLTIQYNHFYLSSQELLKSESLKNDRFYN FLLKEYADLKKLTLSTEDALAIMQNKVEQLYDMDIFAQEPLAIEAIDETLQPKIQEAIVF FEQLIQEKLTEDFQNILIVHLYSAVFYSAQMNETFYSDTKNIYSGKVTQYQAAKTMVDFL QTLFGISFADTEILFFDLFIRKVTAKKRAHSVEENCGVIVVAHGTATASSMVEYTNLLFS TTVMRAVDMPINQSVEETLEKVRTIVKQNQYKKIILMVDIGSLVYFGNAISQTFQMEVLL ISNINLLTLLEVAREVIYESTAFEYLLPVLKEKNHRALICSKGRFNEAKVLIISCLTGMG TAIKIEQLLLKTFPNELLTNVRIITLEKREVEDIDRLHSFVRKEEKIVGIIGTVKTEVPD IPFISLQDLLSKRGIQLVFELLGHHLEEKQNQELLKKVSAKYIQGLSIEAITDLLTVLNP TTISIELAKIYSDICLQTKIKSDEKILLRFIIHCACMLERQLLNPEYDPTAYEVSYRELP EAVSVIKMAFRPLEVSYNLLIPPLEVRYIYELLFEKA >gi|308151767|gb|GL476255.1| GENE 52 62264 - 62665 463 133 aa, chain + ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 6 105 10 107 141 85 48.0 2e-17 MENEPILLLTHNGWGLELVKSVQMIVGEVTNVHEVALQAEDSLGDYLERVTEKIDQLTWH NQLLILTDVKGGTPSNVALRLSKDYDLLIVSGLCTSLLLESVMKQSGPGFRLQDAEMIQQ AAVDSCQILEIPK >gi|308151767|gb|GL476255.1| GENE 53 62685 - 63179 635 164 aa, chain + ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 168 51.0 5e-42 MSKIVLTRVDSRLIHGQVVTKWLQQSGANEILVVSDELEQDEFLQSIYLMAAPPGVSVVI KGIESAKEYWKSQEKEEKKVLFLVPDLTTLKAMVDQEIIKEEIQVGGLGGGPNRKNVLKN INLSEEDVAILTELLTKGIHVFFQAIPEENPLPIQKLIEKYQSL >gi|308151767|gb|GL476255.1| GENE 54 63203 - 63952 1056 249 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 290 63.0 1e-78 MGVLGVSIIMGLYYWFARLRFGYTFSGMLSQPLGAALVAGLATGKLSEAMVVGAGIQLVY LGVTSTPGGNVPSDPALASAIAIPIALGVGMNVEAAVALAVPFGVLGVFMDQLRRTINAT WVHMADKYAEELNYGGIYRAAFVYPALAGFLIRFPLVFAANFFGQSVVNKVLEVIPAWLM HGFEVMGGILPALGFALTIMVIGKKNLIPYFLIGFVAVVYFGAEVMAVAILGICIAFLVR NKALSEEAA >gi|308151767|gb|GL476255.1| GENE 55 63952 - 64803 1053 283 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 9 283 13 286 286 321 62.0 1e-87 MEQMTQANEQQLEQKKITKKELSKAFWIYQLGCELSNSYERLQSLVFCASMIPAIKKLYA DDEEQQREALKRHLNFFNTEGTVGASIQGIAIAMEEEKSNGAAISDTAITSIKTGLMGPL AGIGDSIIWAALMPLIISIFIPMAKGGNVIGSIGPLVLYTAITLYISWTLVNKSYTLGRN SILSLLKDGKIKQVIYSANVLGMMMMGALSASYVKIASPMTFKVTGGATIVLQDILDQIM KGLLPLAAVMAIYFFMVKKGPRYGIIIGTIVLVSLVTSFFGLL >gi|308151767|gb|GL476255.1| GENE 56 64815 - 65166 303 117 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 4 117 5 118 372 106 50.0 8e-24 MNSYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSELSVQTGAFLANLL KVEDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYTEKIEQREIVLPKGHNVDYGTP Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:42:22 2011 Seq name: gi|308151766|gb|GL476256.1| Enterococcus faecalis TX4000 genomic scaffold Scfld23, whole genome shotgun sequence Length of sequence - 9508 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 45 - 266 277 ## EF1883 hypothetical protein 2 1 Op 2 . + CDS 279 - 782 738 ## EF1882 hypothetical protein 3 1 Op 3 . + CDS 856 - 1683 368 ## EF1881 hypothetical protein 4 2 Tu 1 . - CDS 1690 - 2418 380 ## EF1880 hypothetical protein - Prom 2447 - 2506 11.8 + Prom 2201 - 2260 8.6 5 3 Op 1 . + CDS 2482 - 2871 210 ## EF1879 hypothetical protein 6 3 Op 2 . + CDS 2858 - 5305 2200 ## EF1878 ATP/GTP-binding protein, putative 7 3 Op 3 . + CDS 5310 - 7433 1077 ## EF1877 hypothetical protein 8 3 Op 4 . + CDS 7430 - 8434 715 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 9 3 Op 5 . + CDS 8453 - 9364 597 ## EF1875 hypothetical protein Predicted protein(s) >gi|308151766|gb|GL476256.1| GENE 1 45 - 266 277 73 aa, chain + ## HITS:1 COG:no KEGG:EF1883 NR:ns ## KEGG: EF1883 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 102 100.0 7e-21 MNFGQNLYQWFLTNAQSLVLLAIVVIGLFLGFKREFSKLIGFLVIALIAVGLVFNASGVK DVLLNLFNRIVGA >gi|308151766|gb|GL476256.1| GENE 2 279 - 782 738 167 aa, chain + ## HITS:1 COG:no KEGG:EF1882 NR:ns ## KEGG: EF1882 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 167 1 167 167 302 99.0 4e-81 MEQMRVYIANLGRYNEGELVGAWFTPPVDFDEIKERIGLNNEYEEYAIHDYELPFEIDEY TPIEEINRLCGLAEELEGTPIGEVASEIQHAFFNSFEEMVEHLDNIVYYPDCNDMSDLAY YLIEETGALGEVPTHLQNYIDYEAYGRDLEIEGNYLVTSRGVFELCE >gi|308151766|gb|GL476256.1| GENE 3 856 - 1683 368 275 aa, chain + ## HITS:1 COG:no KEGG:EF1881 NR:ns ## KEGG: EF1881 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNIDEAKQLANYFSDGSPGYILEFNNLEWDLYTKKIVGFGIQERFGGSKGNSFKEFLVSE DISDHLKFKLIYSLNETMKQIASIRQFENPSSYKSPKMNPLVTLLIEEAYHKKDSARLLN GTKFSKEVNLEYIQQLPTRISKDIQNKDFDSVLTKSNTMIDEVLKYIIENTKGKSIDNNT VRSKDLRNQAFERLNIKIDKDMDKRIKALVGALNTLSDKILEMRNSQGDAHAQGSRRIVI NEEEAILTANSAMILCEYLFRKYEKRKRFSDAKES >gi|308151766|gb|GL476256.1| GENE 4 1690 - 2418 380 242 aa, chain - ## HITS:1 COG:no KEGG:EF1880 NR:ns ## KEGG: EF1880 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 1 242 242 419 100.0 1e-116 MQNLITMASGTLNEVYSGTEIATLFAEYGAEFNSSVPFISTPFPNFTSKATAIQNNLQSF TEEQQFKIIKELCESVLAQNPANKDVAKILKLLLKNYGSVYSNDKIDRNIINETNTWLTA SSRAKEEFEKAIQSYDNSIYNRYTLDSIRLAFEFFMQDILKNSKSLENQPIEGELLPLLR KKGIPKEIINLVRLIIKGLISYQNENVKHSQTFTDLEVEFVIEQTSILMKLFAKIEKIEN ES >gi|308151766|gb|GL476256.1| GENE 5 2482 - 2871 210 129 aa, chain + ## HITS:1 COG:no KEGG:EF1879 NR:ns ## KEGG: EF1879 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 235 100.0 5e-61 MKKIKSYTSIWAVEKVIYAINDFQLPFPVTFNQMAWFVLSLLFVIVFAHVPPLSMIEGAF LKYLGIPVVVTWFMSQKTFDGKKPLGFLRSFLSYHLRFKVTFAGKKVKEQKKRWDEPITL VRSVNYVPD >gi|308151766|gb|GL476256.1| GENE 6 2858 - 5305 2200 815 aa, chain + ## HITS:1 COG:no KEGG:EF1878 NR:ns ## KEGG: EF1878 # Name: not_defined # Def: ATP/GTP-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 815 1 815 815 1586 99.0 0 MYPIKYVENNLVFNQEGECFAYYELVPYNYSFLSPEQKYQVHDNFRQLIAQNREGKIHAL QIATESSIRATQERSKKEITGRLKEVAKQRIDLQTDTLVSMIGDSQIDYRFFIGFKLIAT DEEVNLKSLKKSFLSGLQEFVYGVNHHLMGDFVSLSNEEIRRYTKLEKLMESKLARRFKV RRVTPSDLTYLIEHIYGEKGTPFEEYEFQLPKKKLKSETLVKRYDLLHPSRCLIEENPRY LRMEHENHESYVAYLTINTIVGEMEFPSSELFYYQQQQFTFPIDTSMNVEIVTNKKALAT VRNKKKELKDLDNHAYQSDNETNSNVLDALDSVNELETTLDQSKESMYKLSYVVRVSAES VDELKRRCDEVFDFYDDTNVKLVRPFGDMMGLHEEFLPSSKRYMNDYIQYVTSDFLAGLG FGATQKLGELEGIYFGYNVDTGRNVYLKPALASQGVKGSVTNALAAAFLGSLGGGKSFSN NLLVYYAVLFGGQAVIVDPKGERGGWKENLPEIADEINILNLTSKPENQGLLDPYVIMKK KKDSESLAIDILTFLTGISSRDGEKFPVLRKAIRTVTQSDQRGLLQVINELRKENSPVAE NIADHIESFTDYDFAHLLFSDGSITQSISLDKQLNIIQVADLVLPDAETTFEEYTTMELL SVSMLIVISTFALDFIHSNREIFKIVDLDEAWSFLQVAQGKTLSNKLVRAGRAMNAGVYF VTQNSDDLLDERLKNNIGLKFAFRSTDIHEIKKTLEFFGLDQEDESNQKRLRDLENGQCL MQDLYGRVGVVQVHPVFEELFHAFDTRPPVQERME >gi|308151766|gb|GL476256.1| GENE 7 5310 - 7433 1077 707 aa, chain + ## HITS:1 COG:no KEGG:EF1877 NR:ns ## KEGG: EF1877 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 707 1 707 707 1335 99.0 0 MKKKLFRIVGIVFISILTLIVLLSLVGTVAEATGLVDDTVESGNLYSKYSLNNYQLDFFV DSSWDWLPWNWGDGLGKSVMYGLYAITNFIWTVSLYLSNATGYVVQEAYKLDFISDTAES IGKNIQTLADITENGLQTSGFYFGFLLLMILALGVYVAYTGLLKRETTKAVRAVINFVMI FLLSGSFIAYAPTYITKINDFSSDVSEAALTLGTEIVVPNSESQGKDSVDLIRDSLFSIQ VQQPWLLLQFDDSNIEEIGEDRVNKILSVSPDENKGKDREEAVKAEIEDNDNANLSITKT MNRLGIVVFLVLFNIGISFFVFLLTGIMLFSQILFIIFAMFLPISFLLSMLPTYESLGKM AIIRLFNTIMMRAGVTLVITTAFSISTMFFNISATYPFFMVAFLQIVTFAGIYFKLGDIM SMFNLQSNDSQSMGRRVMRRPQMLMNRKLRQLNRNVGRTLAFGGAAAVGNKLAKEQSKPK FKPSDSSLRKNSRLPNDREVSSDSAKENPISNNKKQSRMNLTGRKIGKVLDTQALVKDKA KQVKDQVRNTPTNLKYILHKGLEKTKKAPKEFKRGLVQEKADREKLRDKQRQRRDEKMDE KRKNLGEVTDRHGKRRSNVSIKEDPKPQKDRILKNELPKRIVMVKPNSEVRRRLVKQNLV ARENNQLLSKKNSFQQVKQRSTLPKRANQKVQRIMKARPKPKSGDKK >gi|308151766|gb|GL476256.1| GENE 8 7430 - 8434 715 334 aa, chain + ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 215 332 5 122 124 122 48.0 8e-28 MNLKELSVISLTMLMLSFMGILMCVSLLFGEDSEGSGTSGISPGGNSVSEEVLKHRSMVE KYAKESDILDYVPILLAIIQVESGGTMEDVMQSSESAGLPPNSLSTEASIKQGCIYFASL VKSSKELGCDQDSIIQAYNYGGGYLNYVAKNGKKHSFTLAESFSKEKSGGQKVDYPNPIA IKENGGWRYNYGNMFYCLLVKQYLTTTQFDDKTVQGIFDEAFKYEGTAYVFGGSSPATGF DCSGLTQWCYAKVGLKLPRVAQDQYDVMTHIDLKDAKPGDLIFFHSTYDAGTYVTHVGIY AGENRMFHAGNPVGWTNLTESYWQQHLIGAGRYN >gi|308151766|gb|GL476256.1| GENE 9 8453 - 9364 597 303 aa, chain + ## HITS:1 COG:no KEGG:EF1875 NR:ns ## KEGG: EF1875 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 303 485 99.0 1e-135 MKIKIERIQKEKMSKKKKERTISVGKHRKMVLALWLLLSCSLAFGIYKNFTAIDQHTTHV KMVVKEKVINTSGVESFTKNFVKEYFSWKNNKEVIEKRMSNLGQYLTEEGLALSQDMVRV DIPTSSEVNSVKILDVEKRSKDFVVSFLVDQKITEGKKSEQISSAYRVKIFEDEKENHIV TSLPTMISKPGKAKYEVKQVESDSDIDAKTTQEITEFLETFFKLYPTASEKELEYYSENE SMSQVSSDLRFVEITNPIYLEKDGSVQVKIVVKYLNEIEKVTNSFQYNLLLNKEENWKII NGE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:43:02 2011 Seq name: gi|308151765|gb|GL476257.1| Enterococcus faecalis TX4000 genomic scaffold Scfld24, whole genome shotgun sequence Length of sequence - 528 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 516 526 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|308151765|gb|GL476257.1| GENE 1 3 - 516 526 171 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 171 113 283 372 203 61.0 1e-52 MDYGTPVEVMVAQGGGQVVEAGYANMCSPEHVEMMISEKTAAILYIKSHHTVQKSMLTVA EAAKVAQHHKVPLIVDAAAEEDLFKYTEAGADLVIYSGAKAIEGPSAGLVVGKKEYIDWV RLQGKGIGRAMKIGKDNILGFTQAVEEYLAHGSESGASMQERLKPFVEAIN Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:43:20 2011 Seq name: gi|308151764|gb|GL476258.1| Enterococcus faecalis TX4000 genomic scaffold Scfld26, whole genome shotgun sequence Length of sequence - 66735 bp Number of predicted genes - 72, with homology - 70 Number of transcription units - 42, operones - 20 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 20 - 79 9.9 1 1 Tu 1 . + CDS 159 - 1187 1246 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 1198 - 1232 4.5 - Term 1184 - 1221 6.2 2 2 Op 1 3/0.222 - CDS 1227 - 2171 1034 ## COG3481 Predicted HD-superfamily hydrolase 3 2 Op 2 5/0.000 - CDS 2168 - 4879 2905 ## COG4717 Uncharacterized conserved protein 4 2 Op 3 2/0.444 - CDS 4876 - 6111 1288 ## COG0420 DNA repair exonuclease - Prom 6132 - 6191 5.1 - Term 6203 - 6255 15.1 5 3 Op 1 . - CDS 6267 - 6608 602 ## COG3679 Uncharacterized conserved protein 6 3 Op 2 . - CDS 6671 - 8857 2647 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 9037 - 9096 8.7 + Prom 9027 - 9086 6.4 7 4 Tu 1 . + CDS 9200 - 10063 534 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 10069 - 10116 15.3 - Term 10057 - 10104 15.3 8 5 Op 1 . - CDS 10187 - 10741 460 ## PROTEIN SUPPORTED gi|116334854|ref|YP_796381.1| acetyltransferase 9 5 Op 2 . - CDS 10765 - 12273 1508 ## COG1109 Phosphomannomutase 10 5 Op 3 . - CDS 12307 - 12762 735 ## COG1438 Arginine repressor - Prom 12786 - 12845 6.4 - Term 12829 - 12900 14.2 11 6 Op 1 12/0.000 - CDS 12904 - 14421 1689 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 12 6 Op 2 . - CDS 14422 - 15375 968 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 15442 - 15501 3.3 13 7 Tu 1 . + CDS 15672 - 16631 579 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Term 16628 - 16681 12.5 14 8 Tu 1 . - CDS 16814 - 17047 442 ## EF0672 hypothetical protein - Prom 17114 - 17173 4.0 - Term 17136 - 17190 10.5 15 9 Tu 1 . - CDS 17192 - 18607 2128 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 18638 - 18697 6.4 16 10 Tu 1 . - CDS 18741 - 19475 970 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 19503 - 19562 3.3 - Term 19492 - 19540 6.4 17 11 Tu 1 . - CDS 19584 - 21233 1816 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 21262 - 21321 5.8 + Prom 21339 - 21398 6.7 18 12 Tu 1 . + CDS 21437 - 22957 1724 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 22974 - 23015 -0.1 + Prom 23001 - 23060 10.7 19 13 Tu 1 . + CDS 23086 - 23508 517 ## COG0295 Cytidine deaminase + Term 23609 - 23657 6.4 - Term 23597 - 23645 10.6 20 14 Op 1 . - CDS 23650 - 24003 315 ## EF0667 hypothetical protein 21 14 Op 2 . - CDS 24017 - 24223 189 ## EF0667 hypothetical protein - Prom 24274 - 24333 4.6 22 15 Tu 1 . + CDS 24254 - 25228 965 ## COG0346 Lactoylglutathione lyase and related lyases + Term 25230 - 25272 10.1 + Prom 25255 - 25314 6.6 23 16 Tu 1 . + CDS 25341 - 25514 335 ## EF0665 hypothetical protein + Term 25585 - 25620 3.6 - Term 25552 - 25589 1.5 24 17 Op 1 . - CDS 25630 - 25800 166 ## EF0664 hypothetical protein 25 17 Op 2 . - CDS 25767 - 26096 247 ## EF0664 hypothetical protein - Term 26115 - 26141 -0.6 26 17 Op 3 . - CDS 26149 - 26877 1022 ## COG0217 Uncharacterized conserved protein - Prom 26909 - 26968 2.6 - Term 26945 - 27003 9.8 27 18 Tu 1 . - CDS 27008 - 27517 433 ## EF0662 hypothetical protein + Prom 27442 - 27501 8.2 28 19 Tu 1 . + CDS 27645 - 29471 2022 ## COG1164 Oligoendopeptidase F + Term 29480 - 29524 9.1 - Term 29362 - 29405 -0.2 29 20 Op 1 . - CDS 29496 - 30698 804 ## COG0534 Na+-driven multidrug efflux pump 30 20 Op 2 . - CDS 30685 - 30828 141 ## EF0660 MATE efflux family protein - Prom 30941 - 31000 4.1 31 21 Op 1 . - CDS 31003 - 31653 765 ## COG1573 Uracil-DNA glycosylase 32 21 Op 2 . - CDS 31740 - 33140 1433 ## EF0658 hypothetical protein 33 21 Op 3 . - CDS 33153 - 33914 880 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 33950 - 34009 4.0 - Term 33988 - 34029 4.3 34 22 Op 1 . - CDS 34043 - 34888 1158 ## COG2514 Predicted ring-cleavage extradiol dioxygenase 35 22 Op 2 . - CDS 34931 - 35527 860 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 35602 - 35661 5.1 36 23 Op 1 . - CDS 35698 - 36633 858 ## COG1609 Transcriptional regulators 37 23 Op 2 . - CDS 36638 - 36916 198 ## EF0653 hypothetical protein - Prom 36996 - 37055 8.8 + Prom 36960 - 37019 7.1 38 24 Op 1 . + CDS 37046 - 37372 463 ## EF0652 hypothetical protein + Prom 37444 - 37503 5.0 39 24 Op 2 . + CDS 37561 - 38409 915 ## Bfae_02570 Zn-dependent protease with chaperone function + Term 38435 - 38487 16.4 - Term 38419 - 38479 21.6 40 25 Op 1 . - CDS 38480 - 39493 1109 ## COG0095 Lipoate-protein ligase A - Prom 39513 - 39572 2.3 - Term 39587 - 39640 2.4 41 25 Op 2 . - CDS 39680 - 40297 932 ## COG0778 Nitroreductase - Prom 40480 - 40539 5.8 + Prom 40289 - 40348 4.5 42 26 Tu 1 . + CDS 40409 - 40756 195 ## COG1733 Predicted transcriptional regulators + Term 40775 - 40818 2.4 - Term 40727 - 40762 4.0 43 27 Op 1 . - CDS 40770 - 41729 749 ## COG0451 Nucleoside-diphosphate-sugar epimerases 44 27 Op 2 . - CDS 41750 - 42718 969 ## COG1275 Tellurite resistance protein and related permeases - Prom 42768 - 42827 7.6 + Prom 42728 - 42787 7.4 45 28 Tu 1 . + CDS 42860 - 43687 721 ## COG0583 Transcriptional regulator + Term 43692 - 43742 11.1 - Term 43679 - 43729 11.1 46 29 Op 1 . - CDS 43734 - 44144 378 ## EF0643 hypothetical protein 47 29 Op 2 . - CDS 44160 - 44522 195 ## EF0642 hypothetical protein - Prom 44550 - 44609 6.5 + Prom 44541 - 44600 6.6 48 30 Tu 1 . + CDS 44690 - 45643 1421 ## COG0039 Malate/lactate dehydrogenases + Prom 45651 - 45710 3.6 49 31 Op 1 . + CDS 45775 - 46281 693 ## COG1267 Phosphatidylglycerophosphatase A and related proteins + Term 46286 - 46330 7.0 + Prom 46301 - 46360 5.3 50 31 Op 2 . + CDS 46420 - 46869 575 ## COG4808 Uncharacterized protein conserved in bacteria + Term 46870 - 46928 20.2 - Term 46863 - 46910 10.5 51 32 Tu 1 . - CDS 46921 - 47838 1072 ## EF0637 hypothetical protein - Prom 48049 - 48108 4.9 - Term 48114 - 48165 9.1 52 33 Tu 1 . - CDS 48195 - 49601 1655 ## COG1757 Na+/H+ antiporter - Prom 49664 - 49723 3.3 - Term 49615 - 49663 9.3 53 34 Op 1 7/0.000 - CDS 49726 - 51144 1669 ## COG0531 Amino acid transporters - Prom 51171 - 51230 3.4 - Term 51174 - 51214 3.0 54 34 Op 2 . - CDS 51347 - 53209 2412 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins - Prom 53314 - 53373 9.2 - Term 53360 - 53405 13.2 55 35 Tu 1 . - CDS 53508 - 54764 601 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 54916 - 54975 6.2 - Term 55404 - 55444 7.1 56 36 Tu 1 . - CDS 55462 - 56907 1118 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 56986 - 57045 5.9 - Term 56994 - 57038 8.2 57 37 Op 1 . - CDS 57073 - 57555 632 ## EF0630 glyoxalase family protein 58 37 Op 2 . - CDS 57578 - 58417 1142 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 58513 - 58572 4.6 - Term 59168 - 59207 -1.0 59 38 Op 1 . - CDS 59415 - 59543 66 ## EF0628 PTS system, IIA component, putative 60 38 Op 2 . - CDS 59540 - 60022 207 ## EF0625 hypothetical protein 61 38 Op 3 . - CDS 60093 - 60719 253 ## EF2268 hypothetical protein 62 38 Op 4 . - CDS 60733 - 61278 300 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 63 38 Op 5 . - CDS 61324 - 61584 155 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 64 38 Op 6 . - CDS 61517 - 61681 141 ## EF0622 hypothetical protein - Term 61713 - 61739 0.3 65 38 Op 7 . - CDS 61740 - 61910 171 ## EF0621 hypothetical protein - Prom 61937 - 61996 2.0 + Prom 62385 - 62444 7.0 66 39 Tu 1 . + CDS 62471 - 62620 128 ## + Term 62688 - 62734 3.3 + Prom 62708 - 62767 12.3 67 40 Op 1 . + CDS 62897 - 63697 641 ## COG1378 Predicted transcriptional regulators 68 40 Op 2 . + CDS 63713 - 64591 839 ## EF0617 hypothetical protein 69 40 Op 3 . + CDS 64604 - 65584 879 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog + Term 65632 - 65690 2.7 + Prom 65604 - 65663 5.7 70 41 Tu 1 . + CDS 65700 - 65798 96 ## + Prom 65916 - 65975 6.0 71 42 Op 1 . + CDS 66106 - 66324 249 ## gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein 72 42 Op 2 . + CDS 66383 - 66655 197 ## EF0612 hypothetical protein Predicted protein(s) >gi|308151764|gb|GL476258.1| GENE 1 159 - 1187 1246 342 aa, chain + ## HITS:1 COG:SP0981 KEGG:ns NR:ns ## COG: SP0981 COG0760 # Protein_GI_number: 15900858 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 297 1 299 313 164 41.0 3e-40 MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIKEQSTSQQAFSQMVI YKVFEEKYGDKVTDKDIQKNFDEAKEQVEAQGGKFSDALKQASLTEKTFKKQLKQRAAYD AGLKAHLKITDEDLKTAWASFHPEVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKST DAATKKDGGKIKFDSQATTIPAEVKEAAFKLKDGEVSEPIAATNMQTYQTTYYVVKMTKN KAKGNDMKPYEKEIKKIAEETKLADQTFVSKVISDELKAANVKIKDDAFKNALAGYMQTE SSSASSEKKESKSSDSKTSDTKTSDSEKATDSSSKTTESSSK >gi|308151764|gb|GL476258.1| GENE 2 1227 - 2171 1034 314 aa, chain - ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 10 311 4 305 308 366 58.0 1e-101 MKKLRELTVEELFESFVLIKNADVRVAKNGKKFIAFTFQDTSGTIDGKYWDASEDEITRF TAGNVVLLNGKREVYQNKPQVKILHMRLATAEEPSQPSLYMERAPLKKEEMVEEINQVIF EITNAHWNRIVRYLMTKYQQEFYEFPAAKRNHHAFANGLAYHTVSMLRLGKAIAKEYPEI NTSLLYAGIILHDLGKVLELSGAITTEYTVAGNLIGHLVLVDEEITKACLALKIDDREED VVVLRHMVLAHHGLLEYGSPVRPRIMEAEILHQIDTMDASIQMMLGAIRQTQPGEYTERI FGLDNRSFYVPKDK >gi|308151764|gb|GL476258.1| GENE 3 2168 - 4879 2905 903 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 895 1 908 908 218 25.0 6e-56 MKLLAVEIVGFGKWQQQKITFESGNQLLYGANEVGKSTLYQFIQAMLFGFPTKGKRKRDY APKNGGSYGGRLWLAHPVFGEVQVERFKEKNKGQAIIYYQQQMGDEKTLQQMLHPLTKKL FQEVFTFQQEQLITSDKLTEEELQTSLLAIGVSGSQQLLTYRNTYFKEAQKIFKGKGQQP LLNQKLAAYQELKEQIQEKEAQQQTFQQLEETIRETEQQRVTLQQQLKETQQDLLQVAEQ QRHFPLYEEWQSLPEETENVVLVKEDQVQLEETFQEYMYLDKERQRLTKELSLQSEALDV PEGYAFYLEQEALIQQLLNQRYDMQQLMTESEWMTQTFEQNRQEMVLLENEWSWSPERPP QLFYDNETVQKWRQQQVAYTQALQKGQEQKAFLASQIENLEDQLTDFEKAHAAFFGEATR AQKAQKTSQPLWLLLGSILALLGFFLPSPLKWGLVLVGVSLIAKEVLSYATRKEASSDEV KEEWKTKLSQLDYLNEQFQQALNQEREAQLQVEQLEQSVAEQAQLHQLGKMNQIDTLMNQ RELITRYLLLVQTNEELMSQLKENQQKRQGFEEQVFPLMTHLPLQGKSLSEKLHFLEGFA EEMEKVRFAQEYQADGYLKQQLRELKTKQQEALTRIQPLLIRYRILSIADVPMRIQQLTT QQAQVGRGQELATQLGNLFPEAVTEATLKDRSLQLAQQQALEESQLDKIQEQYQALIYEK QQLMTDGTLDELYQRQAILKAEIKELAQRWSGYQLAGQLLMDLLTELSEQQLPSLLQYAS SYFALLTNQRYQSIQVAEGQLVAVTKEQEMFYLHELSTGTKDQLMMAVRFAFLAVQGEQL ICPIIIDDGWLHYDHQRKAQLAELFTKFGQKQQVICFSSDQEMVSYYQDLQQRVIALEGG SVK >gi|308151764|gb|GL476258.1| GENE 4 4876 - 6111 1288 411 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 281 4 283 411 179 37.0 1e-44 MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIRETVDLVIFAGDTFH QSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETL YFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFT WKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATV QFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVT VVQAIVNGELLSYLQQQLLQKTQGDFFVYHLILQAEEPTKEPIYLAASPNLLTALEKTYL DPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL >gi|308151764|gb|GL476258.1| GENE 5 6267 - 6608 602 113 aa, chain - ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 112 4 113 117 87 50.0 5e-18 MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEE FTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND >gi|308151764|gb|GL476258.1| GENE 6 6671 - 8857 2647 728 aa, chain - ## HITS:1 COG:SPy2059 KEGG:ns NR:ns ## COG: SPy2059 COG0744 # Protein_GI_number: 15675827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 34 722 93 777 778 616 49.0 1e-176 MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIY LFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTED RGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELF LAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKG PGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKY PYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDTLFPPNAEDGAM VQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKP DSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGI PLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTK VKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVI GYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATG GKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEG IFGGLLGN >gi|308151764|gb|GL476258.1| GENE 7 9200 - 10063 534 287 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 3 280 5 276 285 210 44 2e-53 MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVT LTFEETDYVFPTIHLGEATRVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYL AEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQT INQPIGRDRHDRRKRRIDPQKGDSAITHVQVVKALSNNQTAVTCVLETGRTHQIRVHLAS EGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW >gi|308151764|gb|GL476258.1| GENE 8 10187 - 10741 460 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116334854|ref|YP_796381.1| acetyltransferase [Lactobacillus brevis ATCC 367] # 1 176 1 176 177 181 50 7e-45 MENVLKGKHVGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDD RFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFY ELGLHKIRLAVNSNNQNAIHVYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMI KAES >gi|308151764|gb|GL476258.1| GENE 9 10765 - 12273 1508 502 aa, chain - ## HITS:1 COG:lin1985 KEGG:ns NR:ns ## COG: lin1985 COG1109 # Protein_GI_number: 16801051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Listeria innocua # 4 489 9 495 503 545 57.0 1e-154 MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIA IGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTFQCDAAIMITASHL PYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVEKIRQGI HSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSE AMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIV TNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENY NLDDGAYIVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLR DFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNAC VIEKIATFLQKYEEIDSQQIEK >gi|308151764|gb|GL476258.1| GENE 10 12307 - 12762 735 151 aa, chain - ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 150 1 149 149 107 38.0 9e-24 MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRV KYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVA GTVAGADTIIVITRSEEDAEHFIERIENMIF >gi|308151764|gb|GL476258.1| GENE 11 12904 - 14421 1689 505 aa, chain - ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 505 5 298 299 338 58.0 1e-92 MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGI FQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGM SKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLI FIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIA GKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIET FLKNPPQLDNQPQVVYEAARAGLKNQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISD LQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYS TDSELKQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMN YQVNVEGQDPSIVAKDYLKEKNLLK >gi|308151764|gb|GL476258.1| GENE 12 14422 - 15375 968 317 aa, chain - ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 317 1 325 327 306 50.0 3e-83 MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVAL NEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKK VQLDPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKE LHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSS PELANYCGADLTAFLEATDETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCIT SKTITRFMEQLLESEGQ >gi|308151764|gb|GL476258.1| GENE 13 15672 - 16631 579 319 aa, chain + ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 1 266 23 288 343 86 28.0 6e-17 MIFGHILDREASPSRLMETINFWIYSFHMSAFIFVSGLFSKHAIKQRKYLRLLSFVWLYL LAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIMLPIIIVIG CASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAVGVILSSFLFVN SQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLPKRKLPLSA LGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITNMPVVKRGA DYLFNPIAYVLPKQWLKVK >gi|308151764|gb|GL476258.1| GENE 14 16814 - 17047 442 77 aa, chain - ## HITS:1 COG:no KEGG:EF0672 NR:ns ## KEGG: EF0672 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 129 98.0 4e-29 MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAML ADTTTDDLFDKIKGLFQ >gi|308151764|gb|GL476258.1| GENE 15 17192 - 18607 2128 471 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 471 3 469 469 551 58.0 1e-156 MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDG FTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDK GPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFP IINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASF ETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYS FINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTS AEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGG TYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK >gi|308151764|gb|GL476258.1| GENE 16 18741 - 19475 970 244 aa, chain - ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 239 1 233 233 268 59.0 6e-72 MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKF FYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAH QLLSPKKHVDKEYLAEVEGLVTVEDCQLFAQGFALKDGEMVKPSRLVIETINEEEGTSVV RLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGEYRPLTEAELQQLQPKQ SYLN >gi|308151764|gb|GL476258.1| GENE 17 19584 - 21233 1816 549 aa, chain - ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 548 1 528 529 447 47.0 1e-125 MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFS MGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMY LASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVAR VFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSA NEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGI FNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFG MIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGL AVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCIT VIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAA KLRAKFNIK >gi|308151764|gb|GL476258.1| GENE 18 21437 - 22957 1724 506 aa, chain + ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 501 2 478 481 455 50.0 1e-127 MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKG LNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLI GFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMA TAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQL ITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESP ADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTN GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA DLYQKVNGVDEPYAGDFALAKMIIDK >gi|308151764|gb|GL476258.1| GENE 19 23086 - 23508 517 140 aa, chain + ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 137 144 172 56.0 1e-43 MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERV AALNMYADSEQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKRE IVRLKELMPKWWGWSRYTND >gi|308151764|gb|GL476258.1| GENE 20 23650 - 24003 315 117 aa, chain - ## HITS:1 COG:no KEGG:EF0667 NR:ns ## KEGG: EF0667 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 74 190 190 226 99.0 2e-58 MTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILLHPSNLGYQYVSGE FATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSEEEVTKIKEVL >gi|308151764|gb|GL476258.1| GENE 21 24017 - 24223 189 68 aa, chain - ## HITS:1 COG:no KEGG:EF0667 NR:ns ## KEGG: EF0667 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 190 118 95.0 6e-26 MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFCAI SQWSITSC >gi|308151764|gb|GL476258.1| GENE 22 24254 - 25228 965 324 aa, chain + ## HITS:1 COG:BS_ykcA KEGG:ns NR:ns ## COG: BS_ykcA COG0346 # Protein_GI_number: 16078352 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 318 6 312 316 182 37.0 8e-46 MYAQIHHISILNRLINPTFDFYHNTLGLKLLMKTINQDDHTMYHLFFSDNEQRTGTELTF FELNDGQDQSFGTNTIERTILKVPTRASLDFWAERLEQAGICHYGVETFNQHPILRFEAP DNTQMALVPLREFENAEDYFPAEHSEIPVEHAILGIDAIQLRVQYAAATKQPLVDYLHWH EKETVPFFETAHEVTVLENHHPQFYQEVHIIDDRTNPLAIEGIGGVHHVAFGVEDTQELT QVDSLLDEKNFTNSGIKDREFFKSLYFREPNHLLFEIATQKGLLDAEAYENQSSNFDEIP LYLPHFLADQRERIEAILAQQRHE >gi|308151764|gb|GL476258.1| GENE 23 25341 - 25514 335 57 aa, chain + ## HITS:1 COG:no KEGG:EF0665 NR:ns ## KEGG: EF0665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 100.0 3e-12 MLSKEEVLHLLNEAKKEVDRLETNRQEDLGNSINYIENELQLQRVLSQVEAYEKVLG >gi|308151764|gb|GL476258.1| GENE 24 25630 - 25800 166 56 aa, chain - ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 56 101 156 156 107 98.0 1e-22 MHQSFRQKHRVVCCSILTSKMTMGSPEHMEQCIGFTGEIAETTAKIIARELAYELV >gi|308151764|gb|GL476258.1| GENE 25 25767 - 26096 247 109 aa, chain - ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 156 188 97.0 7e-47 MEGILKKRICLQAIREEAEAYYRNGDFYCSEAIVATIRQHFDAEIPIEAVAMASGFPVGV GGAKCICGALSGGVMCLGYFFGRTEAKGEQVNKTMAPTNCIKVFDKSIE >gi|308151764|gb|GL476258.1| GENE 26 26149 - 26877 1022 242 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 240 1 239 241 298 62.0 7e-81 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN MPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRN GGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPEVFEIYTAPE DFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFTSAE NL >gi|308151764|gb|GL476258.1| GENE 27 27008 - 27517 433 169 aa, chain - ## HITS:1 COG:no KEGG:EF0662 NR:ns ## KEGG: EF0662 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 319 98.0 3e-86 MKNYLKDSNLYLVIAFVIMAILFFSSSQTYEQQSQVGLLDKLLSSHPFEEQLKNISFQYA GSEVSIQASGYSKFVEFFIRKGAHFGTYFLLGGSWFIGLVPRIKGLFLTAVVSWLAATGY AGLDEFHQMITGGRTPLFQDVMLDAMGALTAIVICLVVHGLKKNKKRRR >gi|308151764|gb|GL476258.1| GENE 28 27645 - 29471 2022 608 aa, chain + ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 9 607 5 601 602 575 49.0 1e-164 MKEGLDMTYSITWDLDSIFPNGSESKELSQRMTQLTEQTKEYHQLITEWTPESAQGKEQF AEILTLQGKISNGFSQCNSFLTALISANTNDTKAKILSGDLYNLLPAIQLAETIFTKKIT EISAEHWQDLLAEEPFKTMAFRLNELRRDGKKLLSEQEENIINTLSLDGLNAWSTHYDTI VASIVIPFEEKDGSVTELSAGQAFNRMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNH LDGFRLSDYKLHGTTDYLENPLNYNRMSQETLTVMWETIQKNKQPFVDFLTRKAQLFGKE KMDWQDQDAPIILGDLEEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRP GKRPGGYCTELPETQESRIFMTFGNSINEVATLAHELGHAFHSSVMWDLPSLNREYAMNV AETASTFAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYLARQK GLVAEEDITELMLAAQKESYKDSLGSYHPHFWASKLHFFIDDVPFYNFPYTFGYLFSMGI YAYANQQGSSFEDQYIALLRDTASMTSEELAKKHLNVDLTKPDFWQAGIDQVLKDVEQFM TLTENYVN >gi|308151764|gb|GL476258.1| GENE 29 29496 - 30698 804 400 aa, chain - ## HITS:1 COG:lin2192 KEGG:ns NR:ns ## COG: lin2192 COG0534 # Protein_GI_number: 16801257 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 1 395 51 443 443 162 28.0 7e-40 MAGLNIVLPLVNIINGLGWMFGVGGATLFSTTVAQKEIKKANQYFSLTIGLVFVIGSLFT LASLIFSDQIIRGLQGTGVLFGLAKEYYMIYLSCSLLFILNNCLITFLRNDHNPRLATIA FVSGGIVNIILDYVFIYQFGWGMAGAAIATVMSPLTSLILITLHKWSPQRVLRFEKFKVK FQDVREIMSIGFSSFLNEFSSAFVMFLFNIVLLNLVGHVAISAYAIVANLNIIVIAIFTG IGQGAQPLLSRYYGLGETKVLRKFVKLSFITYLVAGFLFFLISQVFTGQIIEVFNSEGND QLAQIARTAIRLYAISFLFTGLNFMGIYYFSAVRKPKMALMISSLRGFFLIVPVLFILVK LLGLTGVWLAMPVVEFVTFGLMLVGYLAYRNYLKKREAVT >gi|308151764|gb|GL476258.1| GENE 30 30685 - 30828 141 47 aa, chain - ## HITS:1 COG:no KEGG:EF0660 NR:ns ## KEGG: EF0660 # Name: not_defined # Def: MATE efflux family protein # Organism: E.faecalis # Pathway: not_defined # 1 34 1 34 446 70 100.0 2e-11 MEQTQQNHFTALFYKNVLLGILSMAAQSIFILADHCKWDRHRGIGGA >gi|308151764|gb|GL476258.1| GENE 31 31003 - 31653 765 216 aa, chain - ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 22 203 25 188 199 113 34.0 3e-25 MHYPEHLKQAVLAKAKDLPLEGFVEGQGPQQPKVMLIGEAPGKEEIKENVPFIGRSGQLL MEQLQQVGLSRETVYITSAVRSRPFSVKTKQIAKTGERVTKFPNRTPTKEEIKIFAPLLD WEIAVCQPELILTLGNIGLQRLLGPKPTITAVHGTVIQSPIQTFDEQSQNYHWTQKTYQI IPLFHPAAVFYNYRLKEVVKEDWQVVQKQLQLLKKV >gi|308151764|gb|GL476258.1| GENE 32 31740 - 33140 1433 466 aa, chain - ## HITS:1 COG:no KEGG:EF0658 NR:ns ## KEGG: EF0658 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 466 466 919 98.0 0 MKRKINYTHIAEPTVFENVFPTYLTNETMMARKQKVLQRMETEKFDQLVFYADKEHGSNF EYLTGFIPRFEEGLLVLNKDGMATLILGNENLKLCQHARISADLIHYPAFSLPNQPMDGE QKLSQIFETLLDETAQKIGIVGWKMFTTQQQEPATMFDVPHFIVEALKKALPKEARLLNG THLLIGAKGARTTNNANELAHYEYGANLASRSMLKALNAIEVGQRETDIGALLNDEGQMP TVVTIAATGQRFEYANMYPTAKEIQLGDALSLTTGYKGGLSSRTGFVIENEQQLPEAQRD YLERVAKPYFQAVVHWLETIRIGLLGREMYQAIEEQLPKEIYHWHLNPGHLVSDDEWMSS PIYPDSAIRLESGMLFQVDIIPSVPGYTGVSAEECVALANETLQKEIQQTYPDMWQRIAT RKAYLKETLKIDLPSEVLPMSNLVGYLRPFYLAKDKALCVEKPAPK >gi|308151764|gb|GL476258.1| GENE 33 33153 - 33914 880 253 aa, chain - ## HITS:1 COG:L0153 KEGG:ns NR:ns ## COG: L0153 COG1349 # Protein_GI_number: 15673279 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Lactococcus lactis # 1 253 1 253 253 237 50.0 1e-62 MLIEERLAKIQKIVNEQKSISMEALAEQVSVSKDTIRRDLIRLEKEGHLKRTHGGAISVQ SEATIYDYAQRIMKHPEKEQAIAQEVWANIPKQASIFFDSSTTVEAAIRAMENSPIHAIT NSLSHALLLAQMDQTKITVLPGQLHKQQLFLFGAETVAKVGEFAPDYTLLGVFALSEQGL FIHTEEEGQVKRRMIQQGKQVIALADQTILNKTGLFKICELTEIDCLVTDTRPDEKFCEQ LAQAGVTLIVADE >gi|308151764|gb|GL476258.1| GENE 34 34043 - 34888 1158 281 aa, chain - ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 13 279 12 278 279 186 41.0 4e-47 MVQALPSNIGIQQVTLKVADLDKMVNFYTKTIGLKLLKQGEGRAWLAPQGTNDAILVLKE LTAGEENQGTTGLYHIAFLLPTRKDLGNMLLWLLQENVQIGAADHGYSEALYLSDPENNG IEIYWDKPEEVWDIRPNGEIIGVTEELDGDSLAAEADGHWLGISEGSKIGHIHLKVADLD ATETFYKNLGFGLKSNFGQQAKFFAAGQYHHHIGANTWSGKQLPTIQENQFGLENYTFRL PTAADLEIVQANAEEAKLHFIAKDHLLALEDPSGMIIQFTY >gi|308151764|gb|GL476258.1| GENE 35 34931 - 35527 860 198 aa, chain - ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 6 197 7 198 199 231 56.0 8e-61 MSKFTEMMKNRRSIYALGENLPISKEEVTALVKEVVRESPTAFNSQTQRVVFLFGDAHKK LWAMTEDALKPLTPAEAFPNTQAKLQGFAAGAGTILFFEDTDIVKNLQDSFPLYADNFPV WSEQATGLTQANVWTALAQENIGANLQHYNPVIDEAVAAEWSIPANWNLRAQMVIGSIEA PAGEKEYMEDSARFKEFN >gi|308151764|gb|GL476258.1| GENE 36 35698 - 36633 858 311 aa, chain - ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 305 1 316 318 248 40.0 1e-65 MTTIREIARLSGSSVTTVSRVINHHPYVSEEKRLKIQAIIDELGYKPNILARNLSFGKSN TLGVMVPYTNQPYFDAILSGIIHQAFQQGMMVSLLPTDYDKEVEKSYLEKMATGAFDGMI VLSKANPLSVFAPYKEQVVFCEKIEDPSYASIYIDRLTVYRRVFQALKQQGCSEVAITIN RAPEKSTSARYLVDAYQEIYGAIPENRLFKDCLTYEDGCEVGRHCGQDPTLQAVVTNGDE IAAGIQAVIERPLFLVGQEQTLLSEILNFSTICHPLMELGEKATHLFQEKRPKTIQLTST FINRQPDFSFS >gi|308151764|gb|GL476258.1| GENE 37 36638 - 36916 198 92 aa, chain - ## HITS:1 COG:no KEGG:EF0653 NR:ns ## KEGG: EF0653 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 92 166 97.0 2e-40 MNVIVEISDRLGMDYYFVSVTTTEKSLQLNSPKKYYKIWHQEIPYHQITEWHLTQQEDIQ EISFAWQETFYRFIDYGTGIVPYLTQFCKVMG >gi|308151764|gb|GL476258.1| GENE 38 37046 - 37372 463 108 aa, chain + ## HITS:1 COG:no KEGG:EF0652 NR:ns ## KEGG: EF0652 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 170 99.0 2e-41 METVTVATKSDLLTNLNKQTDEIIISGALAQEIYHLKKQQLTETEEMGFLVGSQGAGSFL TYLIEKLSYINSELSPEEQKIEHAILRLYVIKKLTPETTLLRLKQLDY >gi|308151764|gb|GL476258.1| GENE 39 37561 - 38409 915 282 aa, chain + ## HITS:1 COG:no KEGG:Bfae_02570 NR:ns ## KEGG: Bfae_02570 # Name: not_defined # Def: Zn-dependent protease with chaperone function # Organism: B.faecium # Pathway: not_defined # 16 274 53 326 441 135 30.0 2e-30 MCQPQEKKKEISVAKLRYRFELPMIIIGFVLLFLALGLVALLILSDLPIPDWLLIVLIAP IAPVIAFFTIRYMYMDTASNGVEITENQLPEIYSLYIDLAKEMGFGTKKLRMPRLYLING NGVLNAFAAKCSLHRRYVVIHSDLLDIAYNTGDFSLIRFILAHELGHHKCGHTNLWRLML SIILKPVALDKSFTRTQEYTADRAGLYYAEEGALSMIYLFSGKYMGSRVDLEEYFHSIDL HDDTIWLKLSNFLSDHPVGFRRMQTLKKAKDTGNWDVHGKFF >gi|308151764|gb|GL476258.1| GENE 40 38480 - 39493 1109 337 aa, chain - ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 9 335 10 330 331 302 47.0 7e-82 MRYVIMQSRDIRENLATEDYLLNTLSFEEPLVLFYIQEPCVILGRNQNAYEEIDLAYARE KGIVITRRLSGGGAVYDDLGNVSFSFVVQEGHQAFGDFKAFTKPIIEALHKMGATGAEIS GRNDLLIDGKKFSGNAMYTKKGKMYTHGTLMYDVDLAEVQRVLTVSKKKIESKGTKSVRG RVTNLRPYLDEKYQKLTIEEFRNRLLMELFDVESLTEIAEKEYVLTKTDQQEIRKLVAEV YGNEAWIFGEAPKFTIKKEEKFKGGIVDARLTVEKGKIIELTIYGDYFAKKETAEIVAAL LGVDYQYSSIWQALAAFNFEDYFVNITKEEFVHLLVD >gi|308151764|gb|GL476258.1| GENE 41 39680 - 40297 932 205 aa, chain - ## HITS:1 COG:BS_yodC KEGG:ns NR:ns ## COG: BS_yodC COG0778 # Protein_GI_number: 16079013 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 5 204 6 202 202 129 37.0 3e-30 MMYQDVVRSRRSVRDFMPDVEIPKEELMAIIEEAMFAPNSTNLNSWRFLIVTEKEQKEAL YEVSMQQPAVKGAAAVIILLGDLTAYTVANADEISAKAVAQGTMTEEIRQGINENVSWYY DVSEEQKREWLMLDQGLVAMQLMLSAKDRGYDTVAMSGFKTEAVRKLFNIEDHLVNGLII PIGKAQTPGFETVRRDVSEVVTWLD >gi|308151764|gb|GL476258.1| GENE 42 40409 - 40756 195 115 aa, chain + ## HITS:1 COG:alr2106 KEGG:ns NR:ns ## COG: alr2106 COG1733 # Protein_GI_number: 17229598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 5 103 9 103 110 97 47.0 5e-21 MSQGETMTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRL REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK >gi|308151764|gb|GL476258.1| GENE 43 40770 - 41729 749 319 aa, chain - ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 4 312 7 310 313 328 55.0 8e-90 MKKLLITGGAGFIGSNLANFYSQQYQVFVIDDLSMGRVSNLQQTEQLVFIKGSVTDQQLL DEVLSKHSFEYIFHLAAVASVASSVAQPLETHEVNFLSVLKILESIKKYQKELKRFVFAS SAAVYGAEPTLPKRETSVICPLSPYAIDKFAAERYVLNEYHLHGVPTSAVRFFNVYGPNQ NPASPYSGVLSILMDRYIQLEQGQASQFQIFGDGQQTRDFIYIEDVLTALDLVATKSEAL GHVYNVGTEVAISLNQLIEEMNQLVGLSLPVSYQKERDGDIKYSLSDSSALKGLGFSPVY SIQEGLQKYLKFTHNTQNR >gi|308151764|gb|GL476258.1| GENE 44 41750 - 42718 969 322 aa, chain - ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 8 309 9 307 324 250 53.0 2e-66 MVESAKKFLRKVPIPICGLILGIVSLGNLLYSLGYATIGTIYCVLGSLLMILVILKIIFT MKHALSTLDDPIIASVSPTFTMALMVICVFLDRIFTNAAWINVLWIGAVILHFILMIYFV AVHIFPTKIELEHIYPSWFITFVGIGVIPNTSQLFINELGKIVFWVALFFYLLLLPILIK RITKSKEMPESTIPLLTIMTAPGSLCLAGYISMGGHLYMPLVVFLLILSQCIYGIVVVNL YKIMQVTFYPSYAAFTFPLVISATALVKVKPLFAEKVGLTSLLNILSTFELLLAVAIVSY VFIRYCIFLFQRENNTKKVELN >gi|308151764|gb|GL476258.1| GENE 45 42860 - 43687 721 275 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 241 1 242 272 154 35.0 1e-37 MFEWIKTFIAVYETKNFSAAAKQLYISQPTVSLQIKKLEQHFSIKLFYRNGKQSVIPTKE ADFLYPKMLSIIESLTTSFAQAAEKENFKEDCIIASSNTVAIYLLPDIMESLVTAFPLIN FSIQLMNSNEVVDMVQNNHAHIGLIEKPIETKNLHKEIVYEDQLVLAGDAASKFWLIREK NSGLRFFNELYLNEHSINLPIIELNNNEVLLQLLKNNIGQSIVSRLSISDEIPWQPIDQS FASRKIFIVQTDHHANTSFSEVYNRIVEKIRERQT >gi|308151764|gb|GL476258.1| GENE 46 43734 - 44144 378 136 aa, chain - ## HITS:1 COG:no KEGG:EF0643 NR:ns ## KEGG: EF0643 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 203 97.0 1e-51 MKQVKITTTSDLINGGCNACPNVKCTNYLVHVEDETIALETLTVADLVTLLALKEGFRQK LVMEMFEEYTMFERETHQVVFKEEETRILFQSKKQTIQSTLLSKEPQQVFQETQQILHQL FELEPFEFELVEETDK >gi|308151764|gb|GL476258.1| GENE 47 44160 - 44522 195 120 aa, chain - ## HITS:1 COG:no KEGG:EF0642 NR:ns ## KEGG: EF0642 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 207 97.0 1e-52 MTTTTVYYASNNEKQPNCFQLVIGSCSYELPKIEIYEILECVASAYGYQKEPCIEEQTEC FVKGNRCIHVSQQAMTLTFVVNDLRLVMEKQCRNHEEVFQEVNHILLNIFEETPCVFLEK >gi|308151764|gb|GL476258.1| GENE 48 44690 - 45643 1421 317 aa, chain + ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 314 1 314 314 450 71.0 1e-126 MKVFNKKVAIIGTGFVGTSIAYSMINQGIANELILVDIDKAKSEGEAIDLLDGVSWGQEN VNVWAGDYQDCQDADIVVITAGANQKPGQSRLDLVSINAEIMKTIVNNIMKSGFDGILVI ASNPVDVLTYVAWQASGLPVSRVIGTGTTLDTTRFRKELSQRLAIDPRNVHGYIIGEHGD SEVAVWSHTMIGTKPILEIVDTTERLTSDDLPIISDKVKNTAYEIIDRKQATYYGIGMST ARIVKAILNNEQAILPVSAYLDGQYGQQDVFTGIPAVVGNQGVTDIIELNLNAAEKELFQ KSVTQLKQVMASLQPNA >gi|308151764|gb|GL476258.1| GENE 49 45775 - 46281 693 168 aa, chain + ## HITS:1 COG:lin2497 KEGG:ns NR:ns ## COG: lin2497 COG1267 # Protein_GI_number: 16801559 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Listeria innocua # 1 162 1 162 166 196 67.0 1e-50 MVIQGDTLENSARRLLQERGVTMNDLAELVLFLQKDYIDNLTLDTCLESVDAVLTKREVH NAIITGVQLDILAEENKLLSPLQEILTEDEGLYGIDEIMALSIVNVYGSIGFTNYGYIDK VKPGILKELNAHDGEHVHTFLDDIVGAIAAAAASRLAHSQPDLSDITK >gi|308151764|gb|GL476258.1| GENE 50 46420 - 46869 575 149 aa, chain + ## HITS:1 COG:STM2156 KEGG:ns NR:ns ## COG: STM2156 COG4808 # Protein_GI_number: 16765485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 3 149 6 152 152 105 43.0 2e-23 MKKFLRVFLIFIGVFFLASCGSKIETKTFVGSPQDGIDSTLTYTYQGDKVLTQTAKNIVS YDKLGITKEEAKTALEPVSKQYEDIKGLDYKLTYEDKQAIEKLTINYEKLDYDKAKKVDG IQIDGDSSKGISMKKSQELVESEGYTEQK >gi|308151764|gb|GL476258.1| GENE 51 46921 - 47838 1072 305 aa, chain - ## HITS:1 COG:no KEGG:EF0637 NR:ns ## KEGG: EF0637 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 446 98.0 1e-124 MKKIGLISSAFLLTLALAACGGGKSTENTDSRSSAAESTTFESTKASATKESSSKAATKS SDAKPSGTTIADSKATASSTKEAANNGSAEKQSPAKNANPDDQANQVLNQLANMFPGQGL PQAILTSQTNNFLTAATTSQADQNNFRVLYYAEKEAIPVNDARVNQLTPISSFEKKTYGS DAEAKNAVNQIIDNGGQPVDLGYNITGYKQGAAGSSYLSWQEGNWSLVVRASNINGESPD DLAKNVVNILEQETLPAPNTVGQITLNVAGTTDYNRNSVVWQAGTVVYSVHHFDPIQAVK MATSI >gi|308151764|gb|GL476258.1| GENE 52 48195 - 49601 1655 468 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 11 448 13 450 459 308 40.0 2e-83 MKSTKPTVSFAESLGILVALLAILGYLIIGQKLTPHIPILFVFMLLLLYGKWKGFSWDEI HEGIVEGIKPGIIPIIIFLLIGVLVATWILSGTIPTIMVYGFKIISVKFFLPTVFVVCAL VGVTVGSSFTTVSTMGIAFLGIGHILGFDNAMTAGAVVSGAFLGNNISPLSDTTNLAAGI GGVNLFEHILNMMYTVIPAFIISIVGYIFLGHQSGSADLQSVDAMVQTLHQGFWISPITL LPVAVLFLFAWKKVPAIPTLLVGSTVAVILAFINDHHLSLAKVSTILMSGYVADTGDQSI DTLLSRGGIESMLGSAALIILALGLGGLLIKFNIVATLIDKIKGYVNNPAKLIALTALSS VGINLLVGEQYLSIILPGETFKSSFTRLGIDKKYLTRTLADAGAAVNSLIPWGVSGTFIM GTLKVGALEYLPYAFFPLLCPVITVILGIFLKKQQGENKKAPGTNVEL >gi|308151764|gb|GL476258.1| GENE 53 49726 - 51144 1669 472 aa, chain - ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 5 464 20 484 510 176 26.0 1e-43 MDKQQVKKIELGTFIGLTMALCATVRSIPTLAAVGWTLISYTIFAVLFFAGPIALISGEL STMLPQEGGSQLWVKTALGSKWGFVVAWLLWVQMFPGMVMVASTLGPLLGNTFGNVHLGE NHWFVLGCILVIYWIITILNLKFDMAKVGGNIGVWLGVYIPVLVMFVLGLLSMIKVGLTP GGYLGAFSWSKVLPNLENMDTFKYLAGIAFIFVGIEMSSVYIPRLKDATKNYTKGVFISL IGLVLLNVINAMFVANIVPNGKMELSNITQPILLYCDVLGLPTIIGNIFSFMVFLGVLLQ LSAWVTGPSKTIIQVARDGLLPPKFGFHRENKYGVSRNVVLTQSVVISLFALLYGVMDDV NAVFLTLTNATTIIYSIVYVLIAISLIKLRKSQPDTLRPYRIGKKGNGLAYLVAAMLIFS VIIVIFATLGTTTVTDAVLVALITIVMFVIPLIINRFKKASWATEVKEDLGE >gi|308151764|gb|GL476258.1| GENE 54 51347 - 53209 2412 620 aa, chain - ## HITS:1 COG:VC1149 KEGG:ns NR:ns ## COG: VC1149 COG0076 # Protein_GI_number: 15641162 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Vibrio cholerae # 84 510 87 442 548 120 27.0 1e-26 MKNEKLAKGEMNLNALFIGDKAENGQLYKDLLIDLVDEHLGWRQNYMPQDMPVISSQERT SESYEKTVNHMKDVLNEISSRMRTHSVPWHTAGRYWGHMNSETLMPSLLAYNFAMLWNGN NVAYESSPATSQMEEEVGHEFAHLMSYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMK EVKPELVAGKSDWELLNMPTKEIMDLLESAEDEIDEIKAHSARSGKHLQAIGKWLVPQTK HYSWLKAADIIGIGLDQVIPVPVDHNYRMDINELEKIVRGLAEEQIPVLGVVGVVGSTEE GAVDSIDKIIALRDELMKDGIYYYVHVDAAYGGYGRAIFLDEDNNFIPYEDLQDVHEEYG VFKEKKEHISREVYDAYKAIELAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNVAGYGKLIGASIEGSHHFYNF LNDLTFKVGDKEIEVHTLTHPDFNMVDYVFKEKGNDDLVAMNKLNHDVYDYASYVKGNIY NNEFITSHTDFAIPDYGNSPLKFVNSLGFSDEEWNRAGKVTVLRAAVMTPYMNDKEEFDV YAPKIQAALQEKLEQIYDVK >gi|308151764|gb|GL476258.1| GENE 55 53508 - 54764 601 418 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 392 16 394 418 236 36 3e-61 MNIIDELAWRDAINQQTNEEGLRELTENTSISLYCGVDPTGDSMHIGHLIPFMMMKRFQL AGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNN YDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLESGISFTEFTYQILQSIDFYTLHKK HNIQLQIGGADQWGNITAGLDLIRKKEGPEAKVFGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPFEFYQFWLNQDDRDVIKYLKFFTFLDKEEIDALAEKVEKEPGKREAQRRLAEEV TRFVHDDAALEEAQKISEALFSGNIKDLTIEEIEQGLEHVPTVEITKDAKNIVDWLVDTE IEPSKRQAREDVSGGAISINGDRVTDLDFAVDPTQHFDGKFVVVRKGKKNYFLAKVMD >gi|308151764|gb|GL476258.1| GENE 56 55462 - 56907 1118 481 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 13 481 15 482 482 455 47.0 1e-128 MILSVLTVIYFINAIIAGITILLKPRDVAAIWAWLLVLIALPVFGFFLYLFFGRGLTDKK KFYLQQSDLRELENFQNFQEESFELYSQKMPTEEQQQFTDFFSSLNRMPLTKKNDVEIFT DGTEKFNALMADIKKAQHSIHIEYYAFVTDHIGTKILNLLEEKAAEGVEVRLLYDAFGSK GTKVHHLNELKKNGGFVQTFITSQKALLKFRLNYHDHRKIVVIDGKVGYIGGFNVADQYA GTTKKFGYWRDTHLRIQGPAASLLQMRFLMDWNVSSPEKNRVAYQLDYFFKLEALVPEAN TSIQMIASGPNSDREQIKLAFIKLITSAKKRVWIQTPYLVPDDSVLAALKVAAASGVDVK IMIPDKPDHPFIYRATQYYGRLLMKENIEILIYNGGFLHAKTMIMDDEVCTVGSANQDIR SYKLNFEANAVLYDKKIIDQLEAIFLEDRKKCTTMTPEVVRDMSKWLIFKQQISRLFSPI L >gi|308151764|gb|GL476258.1| GENE 57 57073 - 57555 632 160 aa, chain - ## HITS:1 COG:no KEGG:EF0630 NR:ns ## KEGG: EF0630 # Name: not_defined # Def: glyoxalase family protein # Organism: E.faecalis # Pathway: not_defined # 1 160 1 160 160 312 99.0 2e-84 MSEAVKGFSVVNHVGITVSNLDESVKFYEALTGTKIANRDEIGGKRMAQTQGLDDTLIKY ANVHLENINIDLLEYVKPKSEKASYSNEQISAMHMCFEVEDIDAAVARLRAIGVEPDGEP ITFQEEDGLKSGFGTGVAYFTDPDGTNLELIAPKGPFTRN >gi|308151764|gb|GL476258.1| GENE 58 57578 - 58417 1142 279 aa, chain - ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 11 279 3 272 272 350 67.0 2e-96 MITSLADTVTLNNGTKIPGMGLGVFQIPDEETAKVVEEGIINGYRLIDTAQIYGNESGTG AGIKAGLAATGLNREDLFVTSKVWNAHISYDETIQAFNDSLERLGLDYLDLYLIHWPGNN SYKESWQALETLYAEGKVKAIGVSNFQVHHLEDLLSYAKVVPVINQVELHPKLDQKEVRD FCEKHDIKVQAWSPLMQGQLLSNETILAIAENHNKSAAQVILRWDIQQDILLAVKSVHKE RMISNAAVFDFELSAEEMAQINQLNESLRVGPDPDTFDF >gi|308151764|gb|GL476258.1| GENE 59 59415 - 59543 66 42 aa, chain - ## HITS:1 COG:no KEGG:EF0628 NR:ns ## KEGG: EF0628 # Name: not_defined # Def: PTS system, IIA component, putative # Organism: E.faecalis # Pathway: not_defined # 1 42 97 138 138 67 95.0 3e-10 MMMRNSGIEPFELAKSVVKVGKSNIVLFEKNNEAEELSEEGI >gi|308151764|gb|GL476258.1| GENE 60 59540 - 60022 207 160 aa, chain - ## HITS:1 COG:no KEGG:EF0625 NR:ns ## KEGG: EF0625 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 160 47 206 228 300 95.0 1e-80 MYQYEVLMTYVYLLQISEYLEISLPLDLRTKLKIPILSTYYIADNQDVLNPINDSDHVNF RYVYDSYCNMKKELGKHCSQRNFFRGESSGLMFYKTEDIYFTLFNGLYGSSHGHVSTGSF TLQLQGDDLISDSGCYSYVNKAEWLQPKECDSHNTMFIKD >gi|308151764|gb|GL476258.1| GENE 61 60093 - 60719 253 208 aa, chain - ## HITS:1 COG:no KEGG:EF2268 NR:ns ## KEGG: EF2268 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 204 1 204 642 351 82.0 1e-95 MNLQKIENYQLKFYQQDWLSGYLEKHSKLLEPLFERTYFLLKDQIIYNDAMDMEACSIPY SLKEYTWNRYPGDDPEWLFMLSRQSFLLDLSQAYALTKEKCYLQKWRSLLLDFIQEEGEP NSTNRNVWRPLDVGIRVMNWLKSLTYISIADYKQLGIDKVLRNALLVHLEYLERSYIDKY RLSNWGVLVTGGMAAMDLFLPELVNRVN >gi|308151764|gb|GL476258.1| GENE 62 60733 - 61278 300 181 aa, chain - ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 2 129 130 259 272 111 45.0 9e-25 MDGLGFAPMGFWLSMLISMLVIKLLMGYLGFKLGTSVIETLSDKIGKISSAANIVGVTVI AALATSFVKANIAIKYSHNVESGEKQVIAIQDILDKITPKMLPVILTILVFYLIKKRKWN TYQLLIFFICDWDSSLCLRDFSIVSERSKGQGFRFRVNLVSLFISFLSDGHNIFSVNGNK I >gi|308151764|gb|GL476258.1| GENE 63 61324 - 61584 155 86 aa, chain - ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 5 86 31 112 272 94 54.0 3e-20 MKTFYQGVSYLYTIMPALKKIYKDEPEKLKETASANLEFYNTNPQMLPFITSMQLAMYDN DQSVSDTRSIKMALMGPLSGIGDSIA >gi|308151764|gb|GL476258.1| GENE 64 61517 - 61681 141 54 aa, chain - ## HITS:1 COG:no KEGG:EF0622 NR:ns ## KEGG: EF0622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 88 96.0 7e-17 MKTITLYEILGEEGSDKYISVFKSLIVSNFTENEDILSRCQLFIHNNASAEENL >gi|308151764|gb|GL476258.1| GENE 65 61740 - 61910 171 56 aa, chain - ## HITS:1 COG:no KEGG:EF0621 NR:ns ## KEGG: EF0621 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 56 1 56 56 84 91.0 2e-15 MPIPNQFIDYPLARIKDSIVRKQINPALYPNKLYGNRSWDTFYRYDNQLVYESSYY >gi|308151764|gb|GL476258.1| GENE 66 62471 - 62620 128 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKKGIPYCPKPRNTFERGLFKYFEGKKGQDLKEENQKKKSKKKSEYVF >gi|308151764|gb|GL476258.1| GENE 67 62897 - 63697 641 266 aa, chain + ## HITS:1 COG:BS_yrhO KEGG:ns NR:ns ## COG: BS_yrhO COG1378 # Protein_GI_number: 16079765 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 266 3 263 275 102 24.0 1e-21 METIIQIMKKYDFSEMETRVYTTLLEKGNLTGYEVSKISGVPRSKVYNILEKLLKKNLIV VNKSEPKLYHAISANEFLEKLEKSVKNDLSFLTKNLGMIKEKDEEDMLWKVDGIEYVLDK AEHLVKNAKESLLIQVWHENLTDSLLKALQQAEKRVDKFVLILFSSTHEYDLPLEKYYIH GFETDKLADFGARWINIVADEQEVVFGTINEELQSTDVTWTKNHAMVNLAKEYVKHDAYT LKVIAESSEELKAKYGEDFEGIRKIY >gi|308151764|gb|GL476258.1| GENE 68 63713 - 64591 839 292 aa, chain + ## HITS:1 COG:no KEGG:EF0617 NR:ns ## KEGG: EF0617 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 491 99.0 1e-137 MIRNILLALIVAINLYFIIYFLRDLFKNKQNFKEEPGDMRLLPFTSFITFFLSTFGVSDF AIGTVLYPKLKWVSMKKLPGTLNTQCVVPVAVMALSYITAINVGIKTLAVCIICQIIGAY LGPRFVVKLPEKTIKLFVGIGLVIAAFLIFMGQMNWIPSNGTASELYGGKLILAGFLLFV YGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVPIGSVQFIKFDEYSRKITL FTSTFGVLGVLVAVFLVKSLDTYILKWIVILVLLYSAYTMLSSQLKKATATN >gi|308151764|gb|GL476258.1| GENE 69 64604 - 65584 879 326 aa, chain + ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 325 3 323 326 184 35.0 2e-46 MLFLKKEDIIKSFSMREAIDADKKALSLYSAGKASVPLRTNIDVPKSNGQSLYMPAYVEG GEGALGVKIVSVYPENIKKNLPSVPATMIVLDPETGMVSACLDGTYLTQLRTGAVQGAAT ELLAKEDAKIGALIGTGGQAQSQLEAMLTVRKLEEVRIFDIDFERASQFAEEMMQQFSVT MRPTKTNQECVEGADIITSVTTSKRATFSAEWVKKGAHINGVGAYTPEMCEIPREIIKAA DIVIFDTMDGVLKEAGDFISPLQDGYIQRDSYHGELGQLINEELVGRTSGEQITIFKTVG SAVLDVVVATEIVKKAKENNLGKLIY >gi|308151764|gb|GL476258.1| GENE 70 65700 - 65798 96 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFMTVSDHLKVLGFVPLSSRGKYQLYLLDLPP >gi|308151764|gb|GL476258.1| GENE 71 66106 - 66324 249 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384929|ref|ZP_06630764.1| ## NR: gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] # 3 72 12 81 81 129 100.0 8e-29 MNFFQNVFTDFVGDFKYLIMLAMLDGAAYIAFERKASKAIPLILVLAVAVWLVGDTSDVF NWILDRMRSWGR >gi|308151764|gb|GL476258.1| GENE 72 66383 - 66655 197 90 aa, chain + ## HITS:1 COG:no KEGG:EF0612 NR:ns ## KEGG: EF0612 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 59 5 45 91 71 85.0 1e-11 MWDRVALPRPVTQTFAIWFGISFFGGIFRIFPFVMEHTITRQIFCPWLFAFLMTRKQFQS LSSHISSHIFHHTHISWLAEKGYPLKAIMD Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:44:46 2011 Seq name: gi|308151763|gb|GL476259.1| Enterococcus faecalis TX4000 genomic scaffold Scfld27, whole genome shotgun sequence Length of sequence - 3283 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 157 - 3065 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. + 5S_RRNA 3166 - 3281 100.0 # AE016830 [D:253255..253370] # 5S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:44:47 2011 Seq name: gi|308151762|gb|GL476260.1| Enterococcus faecalis TX4000 genomic scaffold Scfld29, whole genome shotgun sequence Length of sequence - 746 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 530 743 ## EF2975 hypothetical protein 2 1 Op 2 . - CDS 534 - 746 233 ## EF0838 pyridoxal phosphate-dependent enzyme, putative Predicted protein(s) >gi|308151762|gb|GL476260.1| GENE 1 2 - 530 743 176 aa, chain - ## HITS:1 COG:no KEGG:EF2975 NR:ns ## KEGG: EF2975 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 176 1 176 247 335 100.0 5e-91 MSLKPNYLEERICLNVLANSVENAQACYEAAEGHVVLGVLSKNYETDEAAIDDMKKYQAA TNNALSVGLGAGDPNQSQMVARLSEVLQPQHVNQVFTGVGASRALLRQDETVINGLVSPT GKVGYVNIATGPLSSGAPAAEVPIETAIKLLKDMGGSSIKYFPMKGLAHKEEYQAV >gi|308151762|gb|GL476260.1| GENE 2 534 - 746 233 70 aa, chain - ## HITS:1 COG:no KEGG:EF0838 NR:ns ## KEGG: EF0838 # Name: not_defined # Def: pyridoxal phosphate-dependent enzyme, putative # Organism: E.faecalis # Pathway: Selenocompound metabolism [PATH:efa00450]; Aminoacyl-tRNA biosynthesis [PATH:efa00970] # 2 70 300 368 368 124 98.0 1e-27 GDIYRASVKVDGRKTAKEVIQALKAESPAIYTREYQANNGIIEFDIRSVNQEEMNKIVQR LQEIMDTKEK Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:44:58 2011 Seq name: gi|308151761|gb|GL476261.1| Enterococcus faecalis TX4000 genomic scaffold Scfld30, whole genome shotgun sequence Length of sequence - 20308 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 14, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 753 776 ## COG1388 FOG: LysM repeat + Term 958 - 1004 4.0 + Prom 1048 - 1107 5.8 2 2 Tu 1 . + CDS 1157 - 3571 3143 ## COG0495 Leucyl-tRNA synthetase + Term 3586 - 3643 4.1 - Term 3583 - 3622 3.6 3 3 Op 1 . - CDS 3626 - 3850 275 ## EF0802 hypothetical protein - Prom 3881 - 3940 3.7 4 3 Op 2 . - CDS 3947 - 4390 371 ## EF0803 hypothetical protein - Prom 4484 - 4543 7.8 - Term 4510 - 4557 10.5 5 4 Op 1 16/0.000 - CDS 4566 - 5396 947 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 6 4 Op 2 34/0.000 - CDS 5410 - 6045 390 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 7 4 Op 3 . - CDS 6058 - 6699 769 ## COG0765 ABC-type amino acid transport system, permease component - Prom 6800 - 6859 3.7 + Prom 7443 - 7502 3.6 8 5 Tu 1 . + CDS 7533 - 9164 1916 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Prom 9166 - 9225 5.3 9 6 Tu 1 . + CDS 9271 - 9519 386 ## COG2261 Predicted membrane protein + Term 9531 - 9582 8.6 - Term 9524 - 9564 4.1 10 7 Tu 1 . - CDS 9585 - 9908 483 ## EF0819 hypothetical protein - Prom 9945 - 10004 6.9 - Term 10071 - 10121 16.2 11 8 Tu 1 . - CDS 10160 - 10768 1003 ## PROTEIN SUPPORTED gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc - Prom 10994 - 11053 6.2 12 9 Op 1 . + CDS 11099 - 11881 757 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 13 9 Op 2 . + CDS 11878 - 12558 747 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 12563 - 12600 6.6 - Term 12551 - 12588 6.6 14 10 Tu 1 . - CDS 12594 - 13049 502 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 13167 - 13226 6.5 15 11 Op 1 . + CDS 13132 - 13227 67 ## 16 11 Op 2 . + CDS 13224 - 13853 847 ## COG0572 Uridine kinase + Term 13860 - 13912 7.3 + Prom 13937 - 13996 6.7 17 12 Tu 1 . + CDS 14022 - 14363 351 ## COG2337 Growth inhibitor + Term 14376 - 14412 4.3 + Prom 14386 - 14445 2.5 18 13 Tu 1 . + CDS 14465 - 15430 1112 ## COG0673 Predicted dehydrogenases and related proteins + Term 15594 - 15637 4.4 + Prom 15667 - 15726 4.9 19 14 Op 1 . + CDS 15801 - 17720 1655 ## COG3711 Transcriptional antiterminator 20 14 Op 2 . + CDS 17686 - 18009 526 ## EF0829 hypothetical protein 21 14 Op 3 . + CDS 18024 - 18380 588 ## EF0830 hypothetical protein 22 14 Op 4 . + CDS 18411 - 18767 403 ## EF0831 hypothetical protein 23 14 Op 5 . + CDS 18783 - 19562 1102 ## EF0832 hypothetical protein 24 14 Op 6 . + CDS 19582 - 20277 999 ## EF0833 hypothetical protein Predicted protein(s) >gi|308151761|gb|GL476261.1| GENE 1 1 - 753 776 250 aa, chain + ## HITS:1 COG:lin2838_2 KEGG:ns NR:ns ## COG: lin2838_2 COG1388 # Protein_GI_number: 16801898 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Listeria innocua # 17 249 3 253 254 126 37.0 5e-29 SNNNQSGTNTYYTIKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIVKKGTSGN TGGSSNGGSNNNQSGTNTYYTIKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKII VKKGANSGSTNTNKPTNNGGGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDLIF AGQTIIVKKGASAGGNASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDT IYIGQTLKVG >gi|308151761|gb|GL476261.1| GENE 2 1157 - 3571 3143 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 803 803 1270 75.0 0 MSYNHKEIEKKWQKYWAKNNCFNTLDDPNKEKFYALDMFPYPSGQGLHVGHPEGYTATDI LSRMKRAQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKKNIETFRRQINSLGFSYDW NREINTTDPEYYKWTQWIFTKLYEKGLAYEAEVAVNWVPELGTVISNEEVIDGKSERGGY DVVRRPMRQWMLKITAYADRLLEDLELVDWPESIKDMQRNWIGRSEGANVTFKVAGTEES FTVFTTRPDTLFGATYTVLAPELELVKKITTPEQTAAVEAYIEETSKKSDLNRTDLAKEK TGVFTGAYAINPVNGQEIPIWIGDYVLASYGTGAIMAVPAHDERDYEFAKTFGIDILPVI AGGDITTEAYTGDGPHINSDFLNGLNKAEAIAKMNEWLEENHVGKKEVSYRLRDWLFSRQ RYWGEPIPVIHWEDGTTTTVPESELPLRLPVTSDIRPSGTGESPLANIDEWVNVVDPETG MKGKRETNTMPQWAGSSWYYLRFIDPHNKNEIADFEKLKRWLPVDIYIGGAEHAVLHLLY ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDDVVAKYGADTLR LYEMFMGPLDASIAWNENGLEGSRKFLDRVWRLIVDEEGKMRDRITTINDGRLTKVYHQT VKKVTEDMANLHFNTAISQLMVFVNEANKVDALPYEYVEGFVQLLAPIAPHIGEELWQIL GNEESLTYVPWPTYDEAALVEDEVEVVFQVNGKLRGKQNVARGLIKEELEQIAMNHEAVK EFIEGKTVRKVIAVPDKLVNIVAN >gi|308151761|gb|GL476261.1| GENE 3 3626 - 3850 275 74 aa, chain - ## HITS:1 COG:no KEGG:EF0802 NR:ns ## KEGG: EF0802 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 23 96 96 105 98.0 4e-22 MKKYRISLFLGLISLLLFMISILVGSTLSSDGLLKEPAFFCTPLGYFFLFIALLSVITIT CKEHMNQKGKTKQP >gi|308151761|gb|GL476261.1| GENE 4 3947 - 4390 371 147 aa, chain - ## HITS:1 COG:no KEGG:EF0803 NR:ns ## KEGG: EF0803 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 218 98.0 4e-56 MPTNKKEGMLFTTLMCFLMVFGMSTYNLLLHGEFSLYALSKGLLPGFIVAFILDVFIVGV LAKKIAFSLPFNKEKRLLLILTISSLMIIGMVTCMSLFGLLMEGQMLSLSAYFQAWGLNF IVALPYQLLIVGPFSRMILTNYQQRQT >gi|308151761|gb|GL476261.1| GENE 5 4566 - 5396 947 276 aa, chain - ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 4 268 2 266 271 288 54.0 1e-77 MKKKYSLALLVICCSLLLFAGCGKRKSNEDQWTRINEEKRIIIGLDDSFVPMGFQDKSGK IVGFDVDLAKAVFKLYGISVDFQPIDWSMKETELQNQTIDLIWNGYTKTSERAEKVQFTQ PYMTNDQVLVSLKEKNIATASDMQGKILGVQNGSSGYDGFESQPDILKKFVKDQTPILYD GFNEAFLDLKSGRIDGLLIDRVYANYYLSHEDNLKNYTISHVGYDNEDFAVGVRKSDNQL VQKINTAFETLRKDGTLSKISQKWFGEDVTNNTKIN >gi|308151761|gb|GL476261.1| GENE 6 5410 - 6045 390 211 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 213 245 154 38 4e-37 MLTIKNLTKHFDNRTIIDHLNLEIPEGKILTIVGPSGGGKTTLLRCLAGLETIDSGELLL DGVPFNPAEMDNADQVVGVVFQDFQLFPHLSVLENITLAPTLVLKEEKAKSQQEALELLE KLGLAGKEKLYPYQLSGGQKQRVALARALAMKPKVLGYDEPTSALDPALRQQVEEVILDL RKQGMTQIVVTHDMAFAEKIADNLLTVAPVQ >gi|308151761|gb|GL476261.1| GENE 7 6058 - 6699 769 213 aa, chain - ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 237 67.0 1e-62 MDYILEILPALVSGAGMTLKVFFFTLLGSIPLGIIIAFILQSSFKPLRYLINLYIWLMRG TPLLLQLIFVFYGLPLIGIVFERYDAALFAFILNYAAYFAEIFRGGIQAIPQGQYEAAKV LRLTRFQTVTRIILPQVVKIVLPSVGNEIINLVKDTSLIYVLGLGDLLRAGKIAMSRDVT LVPLALVGVIYLLFTAILTVASKKIEKFYQYYK >gi|308151761|gb|GL476261.1| GENE 8 7533 - 9164 1916 543 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 542 1 549 549 391 39.0 1e-108 MKQKKWLIGLVALGLVLAACGSGGSKTTSNEASTQKINVASGGELSTLDSAHYTDVYSSD MIGQVVEGLYRQDKNGDPELAMAKAEPQVSEDGLVYTFKLREAKWTNGDPVKAGDFVVAF RNVVDPAYGSSSSNQMDIFKNGRAVREGQATMEEFGVKAIDDQTLELTLENPIPYLAQVL VGTPFMPKNEAFAKEKGTAYGTSADNFVGNGPFVISGWDGNSETWKLKKNDHYWDKEHVK LNEIDVQVVKEIGTGANLFDNGDLDYTVLADTYALQYKESKQAHFVPKAMVGYLSPNHRR EITGNEHVRKAFLQAIDKETFAKEILGDGSTALNGFVPANFAKNPDTGEDFRKENGDLLP YNIKEAQANWTKAKEELGKDKIELELISADSAIAKKTIEFVQGQLQQNLPGLTIKLKSLP LQNRLDLQTAGNYDLAFGTWTPDYADPINFLEFYDSKSGLNTSGYNDSAYDAGLQKVRKD YANEPEKRWNELLSLEKTLIEKDAGVLPLFQGAIGYLKSDRLQGLQVFSFGRTVSYRLAY VEE >gi|308151761|gb|GL476261.1| GENE 9 9271 - 9519 386 82 aa, chain + ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 83 57 56.0 7e-09 MFSFLWALIVGGIIGAIAGAILGKDVPGGIIGNIIVGFLGSWVASLLLPSLGPVIGGFPI ISALLGAIICIAIYSFIVNRKA >gi|308151761|gb|GL476261.1| GENE 10 9585 - 9908 483 107 aa, chain - ## HITS:1 COG:no KEGG:EF0819 NR:ns ## KEGG: EF0819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 201 100.0 7e-51 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTV HFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLES >gi|308151761|gb|GL476261.1| GENE 11 10160 - 10768 1003 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc [Enterococcus faecalis TX1332] # 1 202 1 202 202 390 100 1e-108 MSVQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTV IKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNMKETTEVEAEVQLIGESAGVKAGGT LAQNLYTVLVAATPDKLPESIEVDITNLEIGDALTIADLPEHKDYEILTDPEEQLVAIVE AQTAPEEEEGTAAETIEPELAE >gi|308151761|gb|GL476261.1| GENE 12 11099 - 11881 757 260 aa, chain + ## HITS:1 COG:SPy1398 KEGG:ns NR:ns ## COG: SPy1398 COG1187 # Protein_GI_number: 15675319 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pyogenes M1 GAS # 1 194 1 194 194 199 53.0 6e-51 MRLDKLLEELQFGSRKTVKRLIRGKQVTVDGIVTLNESQNVDAQLQMIKVKGQLISHKTH VYYMLNKPKGVVSAVSDASKKTVIDLIAPQDRRPGLYPVGRLDGDTEGLLLLTDNGQLGY QLIRPNKEVAKCYEVKVNGLVSAEDCAKFKDGIVLQGGIQCKPAKITVLAATETESHVFL TIQEGKFHQVKKMFLSVGKKVTALKRQTMGPLRLDPQLPLGAYRSLTREELQLLLPYFFI EKQQTSKALPSNLKREEERK >gi|308151761|gb|GL476261.1| GENE 13 11878 - 12558 747 226 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 5 227 235 247 54.0 1e-65 MKTLLFDVDDTLLDFKLAEKKALHALFEEENVPFTSEVESTYHRINQGLWRSFEEGKITK DVLLDTRFGLLFDAFNREVDSVKMGENYREYLSQGHDLLGNSQRILEKLAPHYDLYIVTN GVAKTQYRRLEDSKLMPYFKDIFVSEEVGYQKPMKEYFDFVFERIPNFSREKTMIIGDSL HSDIQGGQQAKIQTVWLNPTSAPATPTIQPNYTIQQLDELLPILGH >gi|308151761|gb|GL476261.1| GENE 14 12594 - 13049 502 151 aa, chain - ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 150 19 155 155 135 52.0 2e-32 MIKKVKKEALTTAHYALLYEADPSKKMVEDYITRGICFDYQTEELQGILVLLPTHPRTLE IVNIAVSEESRGRGIGQELLHFAIDFAKKEKYDYLEIGTGSTGFQQLYLYQKVGFRMTHI EPDFFIHHYDEPIMENGLPLKDMVRLRLHLS >gi|308151761|gb|GL476261.1| GENE 15 13132 - 13227 67 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSLGKGLAFFRVFIIIVKDNEVFEKKEVYT >gi|308151761|gb|GL476261.1| GENE 16 13224 - 13853 847 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 206 4 205 211 278 70.0 6e-75 MKDSQPIIIGVTGGSGSGKTSVSRAIFNNFPDHSIMMLEQDSYYKDQSHLSFEERLNTNY DHPFAFDTDLLIQHVEQLLNYQAIEKPVYDYVAHTRSTETVIQEPKEVIILEGILILEDR RLRDLMDIKVYVDTDDDIRIIRRIKRDMEERGRTLDSVIEQYLTVVKPMYHQFIEPTKRY ADIIVPEGGENHVAIDLINTKVDSILTKM >gi|308151761|gb|GL476261.1| GENE 17 14022 - 14363 351 113 aa, chain + ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 1 112 2 112 115 119 58.0 2e-27 MIKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFSPTLIVAPITRNVSKRLQPTQVL IEILHNECRTPSLILLEQIRTLDKERMLHKVCQLSREEMEQVNQALKVSVGIR >gi|308151761|gb|GL476261.1| GENE 18 14465 - 15430 1112 321 aa, chain + ## HITS:1 COG:L194226 KEGG:ns NR:ns ## COG: L194226 COG0673 # Protein_GI_number: 15673536 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 4 321 2 319 324 245 42.0 7e-65 MDKIRYGIMSTAQIVPRFVAGLRESAQVEVRGIASRRLENAQKMAKELAIPVAYGSYEEL CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM EAQKSVFLPITQKVKATIQEGGLGEILWVQSVTAYPNVDHIPWFYSREAGGGALHGSGSY PLQYLQYVLGKEIQVITGTATYQQGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTIY GTKGQIVIPNFWKTDCAYYTDAQGNTVKWSEQFISEFTYEINHVNQCLQDKKLTSPVMTK ELTIATVKIVESFYQEWFDNE >gi|308151761|gb|GL476261.1| GENE 19 15801 - 17720 1655 639 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 4 493 1 486 499 142 25.0 2e-33 MTVLLSKRAINILLMLLDLEGSITTQELAENFTVSVRTIKYDLEDIRAWFEQHDETLYSK RNKGIWLDLPDSKRLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL LVSRNTIVSDLEQVERLLQAYDLTLIRQARQGFTISGEESNVRLLMEFITQKELTEYDIY QIMNYVTKTKGAEKIPKIKFGSGTLFQGCYRSALKKMRNLINPLDQNQFDYAEILSITLR VAIAAARMQMAHTIGTYRVLSQKTRFEQRNEVPLLLLQEVFERYDLPLLADEYFYIYSDL FGTHQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTNLFAHQSLRFTKKHLFINEYNPFS EEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYIALHFLAAQERQQQEAKVVRIVYV CSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVIQAEKPDLVLSIFPIEEMTYPFIK VSPLLTDTDLSLIREEVDKILLGKRQGKGTARSTKSDVIEKNERIQSQDLLVKAYIIYEE LKRMFQTKLLSEYQEAFLLHVLLMTHRITFNKQYEEIPCNREVSHERQEEIRQIECLFAK NELPVNHAEISALLNYLEQPKEEEDGTSNGSTGDHSTKC >gi|308151761|gb|GL476261.1| GENE 20 17686 - 18009 526 107 aa, chain + ## HITS:1 COG:no KEGG:EF0829 NR:ns ## KEGG: EF0829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 5 111 111 158 98.0 6e-38 MEAQEIIRQSAEPEKLQSIIKQTSARLAEAQIEPTELQWTILINHLNEMLNRSREGTTLA GVDRTLFTELTPETLQIAQETTEAIGQLSEDEWYVLAVHFEVAKQNN >gi|308151761|gb|GL476261.1| GENE 21 18024 - 18380 588 118 aa, chain + ## HITS:1 COG:no KEGG:EF0830 NR:ns ## KEGG: EF0830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 194 100.0 7e-49 MITVVIADRLGKGQNVAKGVEQAGGRAVVVPGMGADMRLGDVMQQEKADLGISFCGSGGA GALTAATKYGYPERHGMRSIEEGVTAINDGKTVLGFGFMDQEELGKRVTEAFIKKHGA >gi|308151761|gb|GL476261.1| GENE 22 18411 - 18767 403 118 aa, chain + ## HITS:1 COG:no KEGG:EF0831 NR:ns ## KEGG: EF0831 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 8e-46 MDATKRSTQTVIVSGKGNKKNEAFASALNDVSKKVLKETTEVLIRIEPKEVTIRQAKEQV YTEKFLFFFFPRKRVIYHVELAVEVEIQAIAVEEVDFLTETIKEPNAVVVPFLSKRGV >gi|308151761|gb|GL476261.1| GENE 23 18783 - 19562 1102 259 aa, chain + ## HITS:1 COG:no KEGG:EF0832 NR:ns ## KEGG: EF0832 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 436 99.0 1e-121 MEFVIILLKSLLIGGLLGFAAGAGAARMFHAPQTQGLGAFRTLGEMNAAQGDPASHFSFG LGFFFNAWASAVGAGAFTQDVTHRIVPNWAAAILLVKDKDVTKTMHNPKKMGIVGAFVGM ATVAFLNSTAAAIPESLQVTAVAVLVPAATILINTVMPVLFWLAALDAGKRTGFWGTLFG GLSQLVMGNAVPGVVLGILIGKGVDDLGWTRMTRGMLGAIILLFILSGFFRGFDLEMIES FRLSIPQWLNNLHNVFTVK >gi|308151761|gb|GL476261.1| GENE 24 19582 - 20277 999 231 aa, chain + ## HITS:1 COG:no KEGG:EF0833 NR:ns ## KEGG: EF0833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 317 99.0 3e-85 MEQQEKNEWAQQEQEIQEGLKGKSFWYADWGFPILVGIMSAAIFAGTHMYVVYGVGAFNE VSIVAMLKAGLDGGSYGAAATFGASFLFARILEGSLVGILDLGGSILTGIGIGVPAIFLS MGIKAPVENFGLALLTGAILGLAVGGVIVLIRKFTINQGNSTFGADVMMGAGNASGRFLG PLIILSAAGASIPIGIGATLGALGFYIWKKPIAGGAILGAMIFGAIFPVSL Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:45:31 2011 Seq name: gi|308151760|gb|GL476262.1| Enterococcus faecalis TX4000 genomic scaffold Scfld31, whole genome shotgun sequence Length of sequence - 10806 bp Number of predicted genes - 11, with homology - 7 Number of transcription units - 6, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 150 - 2501 1197 ## CLH_1292 putative RecF/RecN/SMC N domain 2 1 Op 2 . - CDS 2494 - 3198 375 ## gi|256852457|ref|ZP_05557833.1| predicted protein 3 1 Op 3 . - CDS 3195 - 4598 380 ## ETA_17390 hypothetical protein - Prom 4652 - 4711 8.2 4 2 Tu 1 . - CDS 4866 - 5465 327 ## COG0582 Integrase - Prom 5491 - 5550 8.2 + Prom 5885 - 5944 6.5 5 3 Op 1 1/0.000 + CDS 5991 - 6929 784 ## COG1893 Ketopantoate reductase 6 3 Op 2 . + CDS 6955 - 7992 939 ## COG3641 Predicted membrane protein, putative toxin regulator 7 3 Op 3 . + CDS 8017 - 8130 78 ## + Term 8132 - 8168 5.0 + Prom 8368 - 8427 6.9 8 4 Tu 1 . + CDS 8487 - 8615 120 ## - Term 9356 - 9407 1.1 9 5 Tu 1 . - CDS 9482 - 9589 170 ## - Prom 9627 - 9686 2.3 + Prom 9945 - 10004 10.4 10 6 Op 1 . + CDS 10147 - 10254 156 ## 11 6 Op 2 . + CDS 10272 - 10547 266 ## EF0482 hypothetical protein Predicted protein(s) >gi|308151760|gb|GL476262.1| GENE 1 150 - 2501 1197 783 aa, chain - ## HITS:1 COG:no KEGG:CLH_1292 NR:ns ## KEGG: CLH_1292 # Name: not_defined # Def: putative RecF/RecN/SMC N domain # Organism: C.botulinum_E3 # Pathway: not_defined # 6 781 4 786 789 279 30.0 4e-73 MIKQKINKIYLKNFKHVNEAEISFCNNDLVVLDGPNGFGKTTIFDAVELVMTGKISRITN TIDRRLGYEYTLFSNNNEVDTEVRIEFEKGGEKIVIAKRIDSKKNYTQIQKRPDNWNIFQ TYRLPELMSTFNEGEIISDSDVEEILDISDLERFFNLFYYVQQEENTLFLKKSGKDRMEA ISSLFDTKEEEKELLTIIKAKKRITSRKELIRGQVKNIKNLLDDWMNELEKIKKDNKEIT LYFRLLPKNSNIEWDKEDVNVDITTREKYLNELRAIYKLRKNVEDFFNTQFNNQIDDYLS NNQLLLNTIDYSNFLEKHDDFISLKAKEKSIRRLESAFKKAEIKSNLDISIFEDIENILQ LSLDITGIKRDLEALKISKSKLTDFSKIVQQFKETRKELLKDFSKMKQPIDNDCPLCGVH FDSYDELLKSIQEKEDKFEKMTDYEGQLYEQGLDSFYVNHITNIEQEIKEYLSESENIIP DVFYEGLALAVKKKNQIFDFIEWCKANDIELGNFINIDGNKTISSETSLQELTQLILSKK KNISSGYKDHENKKFIFENIFNSNEIELRQVELESISKKAEYVNSLFYNSGSKKIEDLKS QLKSNEIKEKKLGISEIMATDIISVYEAEIARHWRKIIRDIEIPFYIYSGKIIQNYQLGC GLFIREKDNYEKSIMFVSGIENDHDAINYLSSGQLSGLVIAFTLALNKVYENKSLGVLLI DDPVQTMDEINIASFVELLRNDFSQKQIVLSTHEEEISKYIRYKFSKYGLKTKRINVKNQ LYK >gi|308151760|gb|GL476262.1| GENE 2 2494 - 3198 375 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852457|ref|ZP_05557833.1| ## NR: gi|256852457|ref|ZP_05557833.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9496_00547 [Enterococcus faecalis TX4000] # 1 234 1 234 234 390 100.0 1e-107 MKEVIDAIFLNNGFKKIPIVNPFSDTVSFWGNYSKKATNFYLIVYTDEINTEFISKRVPE YFNAIKTIEKGYDERIDKNLSMLICLRNNTTSIIEHKNIFEIEEDPYFFKKYLLVYNRDI ESIKKELLMGENINNTINNIVNDTEKFAQYKQGLDNPDVELYEICTKLITKIPFISLKHT QSNLNDLSKTIENCLEKKGLKESRNKILQHFDLEDEEFICRIVDNIDLEIIKYD >gi|308151760|gb|GL476262.1| GENE 3 3195 - 4598 380 467 aa, chain - ## HITS:1 COG:no KEGG:ETA_17390 NR:ns ## KEGG: ETA_17390 # Name: not_defined # Def: hypothetical protein # Organism: E.tasmaniensis # Pathway: not_defined # 13 96 13 101 545 76 42.0 3e-12 MLEKTDVTMYSTDASFSWNGYNYQGKVGLLVALKKIEEIRISEEDLADYSLELEWLEDFS IKKNNDYITIHQVKTYNSSAISKYKEAIWTLLAKILEFNNIEKAYLHSTNCLNIPEDFLE KQSIKIPSNPAKNPLIKSPYECYRLVIESNKYDQLCEKLDLYDYGDKESEKRFCSFDEIE TKIKKMIKSITGIAASDERINRTYLCLLNLVDTNIKERHKAIQKGEKKGKVNINFIDIKA IIDKNHELPSREYTIYYMKDEFQRIASQYIVEVLEKEFNMQYLSQENFDLFKQTVEEIYD LDDSEFYEFCLKISPDNEVTAEDDDNALKFLNSCLPKQGLENCFFEILKQIRMKVESKKW VFNKRLSDHKNVVYLPSTILDDNSQFRNEMVIRRIYNNENPDLLREVEKIITKNITINSI YDSRIYRDIPDPDDENQENLDDEYHDRITIMKKIGLIKLEEAKEELE >gi|308151760|gb|GL476262.1| GENE 4 4866 - 5465 327 199 aa, chain - ## HITS:1 COG:CAC1595 KEGG:ns NR:ns ## COG: CAC1595 COG0582 # Protein_GI_number: 15894873 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 4 191 3 178 186 99 39.0 5e-21 MKSVEPIRDKKKIDAMKAILASGKYGQRNLVLFSIGINTAYRISDLRQLKLSDVLEISRG RVIVKERLAMKEQKTAKHNSVFISNKLRKVILDYVQSEFPEQLQAQDFSKYLFPSRKGAD TPLTRQSLWRIIHEAGTAVGLKEIGPHSMRKTFGYFLYKQGTKTEIIQSLLNHSSQRETL RYIGITQEDKDTAVKSLDL >gi|308151760|gb|GL476262.1| GENE 5 5991 - 6929 784 312 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 312 1 312 312 514 80.0 1e-145 MKIAIAGAGAMGSRFGLMLKQGGNDVLLIDGWQEHINAIKENGLKANYNGEEITVKVPIV NQNEVPTGEQFDLIILFTKAMQLEKMLQDVKPLIADHTEVLCLLNGIGHEDVIEKFVPME KIFIGNTMWTAGLEGPGKAKLFGSGSVELQNLGIGQEESAKKLAETLSASGLNAKYSDNI HYSIYRKACVNGTMNGLCTILDVNMAGLGATKPAHDMVVTIVNEFAAVAAKENVNLDIPE VIEHVETCFDPTTIGMHFPSMHQDLIKNNRLTEIDYINGAISRKGKKYGVVTPYCDFLTQ LVHSKEEILGAK >gi|308151760|gb|GL476262.1| GENE 6 6955 - 7992 939 345 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 3 345 5 352 352 268 53.0 2e-71 MEEKLTPKIFLNKVLAGTATGIIVGLIPNAVLAAILKLFGENTLAVTITQMAVIFQLATP LLIGALIAVQFGFKPMQMLVVAGAAFVGSGVVKFNPDTATYIGAGTGDIINTMITASIAV GMILLIGEKFGSVAIVATPIVVGIGAGLIGYYLYPYVTKITAAIGDLINTFTTLQPILMS ILIACSFAFLIISPISTVAIGMAIQLNGVSAGAAAMGVAATTVVLVVNSWKVNKPGVTLA IALGAMKMMMPNLFRKPIILVPCLFTAIISAIPVALFSVSGTPASAGFGLVGLVGPLASL DAGLSIILLLISWFVVPIVAAFVGQILFEKILKLYDRKDVFEFLG >gi|308151760|gb|GL476262.1| GENE 7 8017 - 8130 78 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTLFCAIEVGESQRKEKGTLNSVFLVNSTMKYLNTL >gi|308151760|gb|GL476262.1| GENE 8 8487 - 8615 120 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTDDSLLITECILHLTHLFYYLKIYTNNYNHNYRVKGYSLLC >gi|308151760|gb|GL476262.1| GENE 9 9482 - 9589 170 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQNYNEKSIQHNLMPTAKKYYETKLRLFENETLE >gi|308151760|gb|GL476262.1| GENE 10 10147 - 10254 156 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQQNYNEKSIQHNLMPTAKKYYETKLRLFENETLT >gi|308151760|gb|GL476262.1| GENE 11 10272 - 10547 266 91 aa, chain + ## HITS:1 COG:no KEGG:EF0482 NR:ns ## KEGG: EF0482 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 43 133 133 166 97.0 4e-40 MTDSTEGKYSQTHFDEQDVYFLFGMEILISDQKLSTAIDHLSEIRRKVILLYYFAGFNNT EIGKILNMSTSGIWYQRKKAVEQLKTEYYLW Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:48:19 2011 Seq name: gi|308151759|gb|GL476263.1| Enterococcus faecalis TX4000 genomic scaffold Scfld33, whole genome shotgun sequence Length of sequence - 350081 bp Number of predicted genes - 344, with homology - 338 Number of transcription units - 155, operones - 90 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 83 - 1297 1232 ## COG4468 Galactose-1-phosphate uridyltransferase 2 1 Op 2 30/0.000 + CDS 1369 - 3129 1937 ## COG2812 DNA polymerase III, gamma/tau subunits 3 1 Op 3 . + CDS 3150 - 3464 555 ## COG0718 Uncharacterized protein conserved in bacteria + Term 3487 - 3548 17.4 + Prom 3546 - 3605 2.8 4 2 Op 1 1/0.244 + CDS 3799 - 4329 609 ## COG4732 Predicted membrane protein 5 2 Op 2 6/0.000 + CDS 4313 - 5131 828 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 6 2 Op 3 11/0.000 + CDS 5128 - 5763 573 ## COG0352 Thiamine monophosphate synthase 7 2 Op 4 . + CDS 5760 - 6590 1067 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 6596 - 6643 9.5 - Term 6581 - 6633 13.0 8 3 Tu 1 . - CDS 6684 - 7040 411 ## COG1733 Predicted transcriptional regulators - Prom 7088 - 7147 8.6 + Prom 7036 - 7095 2.7 9 4 Tu 1 . + CDS 7185 - 8375 1259 ## COG2814 Arabinose efflux permease + Term 8381 - 8441 12.3 - Term 8377 - 8419 2.3 10 5 Tu 1 . - CDS 8426 - 9787 1482 ## COG0477 Permeases of the major facilitator superfamily - Prom 9836 - 9895 5.7 - Term 9811 - 9863 10.0 11 6 Tu 1 . - CDS 9951 - 10736 863 ## EF2771 hypothetical protein - Prom 10877 - 10936 7.8 + Prom 10846 - 10905 6.5 12 7 Op 1 4/0.044 + CDS 11110 - 11673 727 ## COG4721 Predicted membrane protein 13 7 Op 2 . + CDS 11670 - 13028 1080 ## COG1122 ABC-type cobalt transport system, ATPase component 14 7 Op 3 . + CDS 13019 - 13672 364 ## EF2768 hypothetical protein 15 7 Op 4 . + CDS 13684 - 14346 883 ## COG0819 Putative transcription activator + Term 14355 - 14398 5.2 + Prom 14392 - 14451 5.0 16 8 Tu 1 . + CDS 14522 - 15118 661 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Prom 15240 - 15299 4.5 17 9 Op 1 4/0.044 + CDS 15327 - 15965 829 ## COG0125 Thymidylate kinase 18 9 Op 2 2/0.178 + CDS 15985 - 16314 512 ## COG3870 Uncharacterized protein conserved in bacteria 19 9 Op 3 7/0.000 + CDS 16316 - 17266 865 ## COG0470 ATPase involved in DNA replication 20 9 Op 4 5/0.000 + CDS 17383 - 18222 985 ## COG1774 Uncharacterized homolog of PSP1 21 9 Op 5 2/0.178 + CDS 18215 - 18562 418 ## COG4467 Uncharacterized protein conserved in bacteria + Term 18588 - 18648 17.5 + Prom 18572 - 18631 5.2 22 10 Op 1 . + CDS 18674 - 19546 918 ## COG0313 Predicted methyltransferases 23 10 Op 2 4/0.044 + CDS 19561 - 20223 212 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 24 10 Op 3 . + CDS 20207 - 20965 704 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 20973 - 21023 9.1 + Prom 20974 - 21033 2.5 25 11 Tu 1 . + CDS 21091 - 22209 1249 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Term 22191 - 22249 14.2 26 12 Op 1 12/0.000 - CDS 22254 - 22850 564 ## COG0602 Organic radical activating enzymes 27 12 Op 2 . - CDS 22883 - 25066 1910 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 25163 - 25222 10.5 + Prom 25269 - 25328 6.9 28 13 Op 1 36/0.000 + CDS 25472 - 26239 290 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 29 13 Op 2 . + CDS 26229 - 28325 1870 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 28330 - 28373 9.4 + Prom 28436 - 28495 11.1 30 14 Op 1 . + CDS 28529 - 28678 146 ## EF2750 hypothetical protein 31 14 Op 2 6/0.000 + CDS 28693 - 30213 1970 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 32 14 Op 3 7/0.000 + CDS 30210 - 31415 1027 ## COG1696 Predicted membrane protein involved in D-alanine export 33 14 Op 4 6/0.000 + CDS 31448 - 31684 515 ## COG0236 Acyl carrier protein 34 14 Op 5 . + CDS 31684 - 32958 1369 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 33019 - 33078 2.0 + Prom 33085 - 33144 10.0 35 15 Op 1 . + CDS 33171 - 34253 1322 ## COG1363 Cellulase M and related proteins 36 15 Op 2 . + CDS 34274 - 35065 837 ## EF2743 hypothetical protein + Term 35070 - 35124 8.3 + Prom 35126 - 35185 3.0 37 16 Op 1 2/0.178 + CDS 35211 - 35951 1037 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 38 16 Op 2 . + CDS 35984 - 36988 1150 ## COG0095 Lipoate-protein ligase A + Term 36998 - 37032 5.3 + Prom 37370 - 37429 7.2 39 17 Tu 1 . + CDS 37604 - 38293 861 ## COG4122 Predicted O-methyltransferase + Term 38312 - 38368 17.5 + Prom 38450 - 38509 10.7 40 18 Op 1 2/0.178 + CDS 38534 - 39097 690 ## COG0450 Peroxiredoxin + Term 39123 - 39171 8.5 41 18 Op 2 . + CDS 39194 - 40876 1961 ## COG0492 Thioredoxin reductase + Term 40926 - 40970 12.5 - Term 40912 - 40958 12.1 42 19 Tu 1 . - CDS 40976 - 41566 200 ## gi|257087704|ref|ZP_05582065.1| predicted protein - Prom 41586 - 41645 3.2 - Term 41608 - 41667 12.6 43 20 Op 1 . - CDS 41687 - 42220 578 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 44 20 Op 2 . - CDS 42254 - 43009 826 ## COG0708 Exonuclease III - Prom 43090 - 43149 7.8 45 21 Op 1 . + CDS 43216 - 44130 951 ## COG0673 Predicted dehydrogenases and related proteins 46 21 Op 2 . + CDS 44202 - 45104 1362 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 45112 - 45160 17.2 - Term 45100 - 45148 13.4 47 22 Op 1 . - CDS 45178 - 45816 652 ## COG0517 FOG: CBS domain - Prom 45869 - 45928 7.3 48 22 Op 2 . - CDS 46029 - 46151 113 ## - Prom 46210 - 46269 3.9 + Prom 45896 - 45955 6.1 49 23 Op 1 . + CDS 46102 - 46254 267 ## PROTEIN SUPPORTED gi|29377208|ref|NP_816362.1| ribosomal protein L33 50 23 Op 2 . + CDS 46275 - 46445 324 ## EF2730 preprotein translocase, SecE subunit + Term 46491 - 46531 1.1 + Prom 46490 - 46549 7.4 51 24 Op 1 . + CDS 46570 - 47115 773 ## COG0250 Transcription antiterminator + Term 47162 - 47213 8.2 52 24 Op 2 . + CDS 47235 - 48113 944 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 48120 - 48164 12.4 - Term 48097 - 48160 21.1 53 25 Tu 1 . - CDS 48206 - 48928 371 ## EF2727 phosphosugar-binding transcriptional regulator, putative - Prom 48975 - 49034 13.9 + Prom 48708 - 48767 5.6 54 26 Op 1 . + CDS 49006 - 50634 1577 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 55 26 Op 2 . + CDS 50648 - 51751 1068 ## COG1363 Cellulase M and related proteins 56 26 Op 3 . + CDS 51748 - 52593 988 ## COG2362 D-aminopeptidase + Term 52601 - 52651 10.4 - Term 52584 - 52642 4.2 57 27 Op 1 9/0.000 - CDS 52658 - 53530 1209 ## COG1760 L-serine deaminase 58 27 Op 2 . - CDS 53553 - 54221 696 ## COG1760 L-serine deaminase - Prom 54456 - 54515 5.1 + Prom 54328 - 54387 5.2 59 28 Tu 1 . + CDS 54597 - 56093 1542 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 60 29 Op 1 55/0.000 + CDS 56216 - 56638 679 ## PROTEIN SUPPORTED gi|29377197|ref|NP_816351.1| ribosomal protein L11 + Prom 56667 - 56726 2.7 61 29 Op 2 43/0.000 + CDS 56750 - 57439 1156 ## PROTEIN SUPPORTED gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 + Term 57470 - 57515 10.0 62 30 Op 1 47/0.000 + CDS 57762 - 58262 780 ## PROTEIN SUPPORTED gi|227519497|ref|ZP_03949546.1| 50S ribosomal protein L10 63 30 Op 2 . + CDS 58325 - 58693 571 ## PROTEIN SUPPORTED gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 + Term 58716 - 58754 7.0 - Term 58826 - 58862 3.2 64 31 Tu 1 . - CDS 58944 - 59816 579 ## EF2713 cell wall surface anchor family protein - Prom 59879 - 59938 9.0 65 32 Tu 1 . - CDS 60136 - 60966 619 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 61036 - 61095 5.9 + Prom 61020 - 61079 8.7 66 33 Op 1 . + CDS 61115 - 62614 1559 ## COG0531 Amino acid transporters 67 33 Op 2 . + CDS 62592 - 65669 3350 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 65677 - 65723 3.1 + Prom 65715 - 65774 6.2 68 34 Tu 1 . + CDS 65850 - 66098 410 ## COG2261 Predicted membrane protein + Term 66128 - 66176 13.4 - Term 66116 - 66164 17.2 69 35 Tu 1 . - CDS 66170 - 67540 1537 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 67577 - 67636 10.1 + Prom 67427 - 67486 7.8 70 36 Op 1 . + CDS 67672 - 68472 853 ## COG2137 Uncharacterized protein conserved in bacteria 71 36 Op 2 . + CDS 68462 - 69646 1219 ## COG1194 A/G-specific DNA glycosylase + Term 69647 - 69700 13.3 + Prom 69701 - 69760 4.8 72 37 Op 1 . + CDS 69827 - 70951 1131 ## COG1316 Transcriptional regulator + Prom 71038 - 71097 10.0 73 37 Op 2 . + CDS 71143 - 71574 528 ## EF2702 hypothetical protein + Term 71577 - 71627 12.2 + Prom 71623 - 71682 8.2 74 38 Tu 1 . + CDS 71737 - 73257 427 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs + Term 73267 - 73313 -0.8 - Term 73739 - 73789 8.5 75 39 Op 1 . - CDS 73870 - 74394 669 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 76 39 Op 2 . - CDS 74411 - 75232 852 ## COG1051 ADP-ribose pyrophosphatase - Prom 75265 - 75324 7.7 - Term 75309 - 75365 17.3 77 40 Op 1 4/0.044 - CDS 75395 - 76582 1608 ## COG3853 Uncharacterized protein involved in tellurite resistance 78 40 Op 2 . - CDS 76602 - 77282 805 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 77335 - 77394 6.0 + Prom 77526 - 77585 8.0 79 41 Op 1 . + CDS 77667 - 78251 568 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 80 41 Op 2 . + CDS 78248 - 78544 420 ## EF2695 hypothetical protein 81 41 Op 3 . + CDS 78560 - 79255 1011 ## COG0775 Nucleoside phosphorylase + Term 79259 - 79323 24.5 - Term 79252 - 79304 18.0 82 42 Op 1 6/0.000 - CDS 79322 - 79588 295 ## COG2827 Predicted endonuclease containing a URI domain 83 42 Op 2 . - CDS 79578 - 80312 886 ## COG4123 Predicted O-methyltransferase - Prom 80345 - 80404 6.5 + Prom 80307 - 80366 5.9 84 43 Tu 1 . + CDS 80501 - 81127 820 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 81158 - 81205 4.0 + Prom 81227 - 81286 7.8 85 44 Op 1 28/0.000 + CDS 81311 - 82447 1012 ## COG0420 DNA repair exonuclease 86 44 Op 2 1/0.244 + CDS 82452 - 85589 3707 ## COG0419 ATPase involved in DNA repair 87 44 Op 3 . + CDS 85609 - 88806 3391 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 88 44 Op 4 . + CDS 88856 - 89227 513 ## EF2687 hypothetical protein 89 44 Op 5 . + CDS 89228 - 89782 515 ## EF2687 hypothetical protein + Term 89801 - 89858 15.0 + Prom 89865 - 89924 4.2 90 45 Op 1 . + CDS 89944 - 92115 2066 ## COG4886 Leucine-rich repeat (LRR) protein 91 45 Op 2 . + CDS 92152 - 92487 193 ## EF2685 cell wall surface anchor family protein 92 45 Op 3 . + CDS 92489 - 93271 982 ## EF2684 hypothetical protein 93 45 Op 4 . + CDS 93311 - 94087 1032 ## EF2683 hypothetical protein + Term 94101 - 94145 3.0 94 45 Op 5 . + CDS 94162 - 95187 1088 ## EF2682 hypothetical protein + Term 95194 - 95230 7.3 - Term 95182 - 95218 3.5 95 46 Tu 1 . - CDS 95225 - 95938 633 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 96070 - 96129 6.5 + Prom 95938 - 95997 7.3 96 47 Op 1 . + CDS 96114 - 96200 79 ## 97 47 Op 2 . + CDS 96266 - 97981 244 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 97987 - 98022 4.1 - Term 97965 - 98019 14.6 98 48 Tu 1 . - CDS 98025 - 99035 1048 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 99224 - 99283 11.3 + Prom 99208 - 99267 10.6 99 49 Tu 1 . + CDS 99395 - 99793 403 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 99807 - 99852 3.4 + Prom 100038 - 100097 5.2 100 50 Tu 1 3/0.111 + CDS 100136 - 100798 803 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 100799 - 100846 5.2 + Prom 100803 - 100862 3.8 101 51 Op 1 7/0.000 + CDS 100887 - 102065 455 ## COG4469 Competence protein 102 51 Op 2 . + CDS 102113 - 103924 2153 ## COG1164 Oligoendopeptidase F + Term 103935 - 103980 7.2 - Term 103917 - 103975 12.9 103 52 Op 1 1/0.244 - CDS 104018 - 104677 595 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 104 52 Op 2 . - CDS 104741 - 105319 647 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 105343 - 105402 3.6 + Prom 105245 - 105304 6.5 105 53 Op 1 6/0.000 + CDS 105516 - 106190 808 ## COG2357 Uncharacterized protein conserved in bacteria 106 53 Op 2 7/0.000 + CDS 106203 - 107000 675 ## COG0061 Predicted sugar kinase 107 53 Op 3 1/0.244 + CDS 107008 - 107901 261 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 108 53 Op 4 . + CDS 107932 - 109293 1917 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Term 109360 - 109406 7.2 - Term 109347 - 109392 10.0 109 54 Tu 1 . - CDS 109411 - 110040 923 ## COG3142 Uncharacterized protein involved in copper resistance + Prom 110081 - 110140 3.7 110 55 Tu 1 . + CDS 110170 - 111015 686 ## COG0500 SAM-dependent methyltransferases + Term 111212 - 111251 0.3 + Prom 111225 - 111284 7.9 111 56 Tu 1 . + CDS 111327 - 111833 622 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 111852 - 111895 2.0 + Prom 111839 - 111898 4.8 112 57 Op 1 1/0.244 + CDS 112050 - 112694 772 ## COG0406 Fructose-2,6-bisphosphatase 113 57 Op 2 . + CDS 112721 - 115330 3004 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 115341 - 115385 13.2 - Term 115323 - 115379 13.1 114 58 Tu 1 . - CDS 115397 - 116356 823 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 116379 - 116438 6.1 + Prom 116492 - 116551 5.2 115 59 Op 1 . + CDS 116619 - 117125 476 ## COG4708 Predicted membrane protein + Term 117181 - 117226 -0.4 + Prom 117261 - 117320 7.2 116 59 Op 2 . + CDS 117363 - 118568 1517 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 118576 - 118631 16.1 - Term 118563 - 118617 17.1 117 60 Op 1 3/0.111 - CDS 118624 - 119259 709 ## COG4684 Predicted membrane protein 118 60 Op 2 3/0.111 - CDS 119263 - 119817 520 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 119 60 Op 3 . - CDS 119814 - 120587 881 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 120 60 Op 4 . - CDS 120603 - 121595 1419 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 121684 - 121743 5.5 + Prom 121723 - 121782 7.3 121 61 Op 1 4/0.044 + CDS 121859 - 122401 645 ## COG1396 Predicted transcriptional regulators 122 61 Op 2 30/0.000 + CDS 122427 - 123512 1214 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 123 61 Op 3 36/0.000 + CDS 123531 - 124337 922 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 124 61 Op 4 25/0.000 + CDS 124337 - 125173 851 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 125 61 Op 5 . + CDS 125170 - 126243 1344 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 126266 - 126326 20.5 + Prom 126312 - 126371 4.6 126 62 Tu 1 . + CDS 126394 - 127077 441 ## EF2648 hypothetical protein + Prom 127101 - 127160 6.2 127 63 Op 1 6/0.000 + CDS 127187 - 128479 1324 ## COG2610 H+/gluconate symporter and related permeases 128 63 Op 2 1/0.244 + CDS 128501 - 129649 1507 ## COG1929 Glycerate kinase + Term 129710 - 129778 12.2 + Prom 129658 - 129717 3.0 129 64 Tu 1 . + CDS 129791 - 130804 879 ## COG3835 Sugar diacid utilization regulator + Prom 130827 - 130886 8.4 130 65 Tu 1 . + CDS 130927 - 131829 1069 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 131847 - 131901 3.6 + Prom 131883 - 131942 4.8 131 66 Tu 1 . + CDS 131973 - 132683 785 ## COG3597 Uncharacterized protein/domain associated with GTPases + Term 132862 - 132898 4.1 - Term 132892 - 132934 8.1 132 67 Op 1 16/0.000 - CDS 132967 - 134676 2009 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 133 67 Op 2 1/0.244 - CDS 134669 - 135859 1471 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Prom 135998 - 136057 12.4 - Term 136009 - 136050 3.6 134 68 Op 1 . - CDS 136059 - 136691 609 ## COG2188 Transcriptional regulators 135 68 Op 2 . - CDS 136706 - 138652 2055 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 138771 - 138830 6.3 136 69 Tu 1 . + CDS 138866 - 139516 852 ## COG2344 AT-rich DNA-binding protein + Term 139523 - 139571 11.1 - Term 139510 - 139558 9.2 137 70 Op 1 . - CDS 139559 - 140212 671 ## COG1266 Predicted metal-dependent membrane protease 138 70 Op 2 . - CDS 140231 - 140407 201 ## EF2636 hypothetical protein - Prom 140429 - 140488 7.3 + Prom 140555 - 140614 6.2 139 71 Op 1 41/0.000 + CDS 140640 - 140924 427 ## COG0234 Co-chaperonin GroES (HSP10) 140 71 Op 2 . + CDS 140982 - 142607 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 142630 - 142665 5.3 + Prom 142819 - 142878 12.6 141 72 Op 1 . + CDS 142910 - 143629 770 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 142 72 Op 2 . + CDS 143653 - 144288 757 ## EF2629 hypothetical protein 143 72 Op 3 . + CDS 144380 - 145186 642 ## COG1705 Muramidase (flagellum-specific) + Prom 145189 - 145248 6.8 144 73 Op 1 . + CDS 145328 - 145738 293 ## COG2246 Predicted membrane protein 145 73 Op 2 5/0.000 + CDS 145816 - 147300 1562 ## COG1488 Nicotinic acid phosphoribosyltransferase 146 73 Op 3 . + CDS 147303 - 148130 1161 ## COG0171 NAD synthase + Term 148134 - 148178 9.0 + Prom 148241 - 148300 4.7 147 74 Op 1 . + CDS 148323 - 150128 2023 ## COG2217 Cation transport ATPase + Prom 150139 - 150198 2.9 148 74 Op 2 5/0.000 + CDS 150220 - 150504 398 ## COG3592 Uncharacterized conserved protein 149 74 Op 3 . + CDS 150494 - 150769 386 ## COG2388 Predicted acetyltransferase + Term 150785 - 150833 12.7 + Prom 150828 - 150887 4.9 150 75 Tu 1 . + CDS 150937 - 151173 387 ## COG1314 Preprotein translocase subunit SecG + Term 151203 - 151252 12.4 + Prom 151238 - 151297 5.5 151 76 Op 1 4/0.044 + CDS 151328 - 152092 882 ## COG1647 Esterase/lipase 152 76 Op 2 10/0.000 + CDS 152092 - 154461 1620 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 153 76 Op 3 . + CDS 154474 - 154938 608 ## COG0691 tmRNA-binding protein + Term 155076 - 155116 -0.3 + Prom 154946 - 155005 7.2 154 77 Op 1 40/0.000 + CDS 155241 - 155960 647 ## COG0356 F0F1-type ATP synthase, subunit a 155 77 Op 2 37/0.000 + CDS 156009 - 156230 434 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 156241 - 156294 4.0 156 77 Op 3 38/0.000 + CDS 156368 - 156898 764 ## COG0711 F0F1-type ATP synthase, subunit b 157 77 Op 4 41/0.000 + CDS 156885 - 157427 705 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 158 77 Op 5 42/0.000 + CDS 157456 - 159012 2272 ## COG0056 F0F1-type ATP synthase, alpha subunit 159 77 Op 6 42/0.000 + CDS 159028 - 159936 1055 ## COG0224 F0F1-type ATP synthase, gamma subunit + Term 159945 - 159993 8.3 160 77 Op 7 42/0.000 + CDS 160010 - 161416 1930 ## COG0055 F0F1-type ATP synthase, beta subunit 161 77 Op 8 . + CDS 161433 - 161852 667 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 161857 - 161885 -0.0 + Prom 161945 - 162004 6.1 162 78 Tu 1 . + CDS 162041 - 162277 146 ## EF2606 hypothetical protein + Prom 162279 - 162338 6.2 163 79 Op 1 . + CDS 162380 - 163681 1769 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 164 79 Op 2 . + CDS 163695 - 163871 306 ## EF2604 hypothetical protein + Term 163885 - 163935 7.1 + Prom 163911 - 163970 9.7 165 80 Op 1 . + CDS 163999 - 164367 444 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 166 80 Op 2 . + CDS 164372 - 165541 1398 ## COG0628 Predicted permease + Term 165547 - 165589 9.1 - Term 165534 - 165576 9.1 167 81 Tu 1 . - CDS 165603 - 166229 913 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 166350 - 166409 8.7 + Prom 166307 - 166366 16.4 168 82 Op 1 7/0.000 + CDS 166531 - 167373 843 ## COG3711 Transcriptional antiterminator + Prom 167437 - 167496 1.9 169 82 Op 2 8/0.000 + CDS 167536 - 169416 2211 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 170 82 Op 3 . + CDS 169441 - 170886 1797 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 170960 - 171009 10.1 + Prom 170989 - 171048 5.4 171 83 Tu 1 . + CDS 171068 - 171637 704 ## COG0194 Guanylate kinase + Term 171642 - 171700 9.1 + Prom 171685 - 171744 9.3 172 84 Op 1 . + CDS 171785 - 172462 769 ## COG1309 Transcriptional regulator 173 84 Op 2 35/0.000 + CDS 172483 - 174210 183 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 174 84 Op 3 . + CDS 174207 - 176075 215 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 176104 - 176166 18.4 + Prom 176134 - 176193 6.6 175 85 Tu 1 . + CDS 176279 - 177106 984 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 177156 - 177201 1.2 + Prom 177145 - 177204 4.0 176 86 Op 1 . + CDS 177236 - 178279 985 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 177 86 Op 2 . + CDS 178321 - 179292 1184 ## COG1482 Phosphomannose isomerase + Term 179298 - 179340 9.2 - Term 179286 - 179327 5.2 178 87 Op 1 . - CDS 179348 - 179893 483 ## EF2588 hypothetical protein 179 87 Op 2 . - CDS 179896 - 180870 854 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 181014 - 181073 5.5 - Term 181056 - 181104 8.5 180 88 Op 1 10/0.000 - CDS 181107 - 181796 954 ## COG3442 Predicted glutamine amidotransferase 181 88 Op 2 . - CDS 181789 - 183141 1600 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 183194 - 183253 11.5 - Term 183289 - 183335 8.0 182 89 Tu 1 . - CDS 183347 - 183985 606 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 184127 - 184186 5.8 + Prom 184166 - 184225 10.7 183 90 Op 1 1/0.244 + CDS 184388 - 185722 1752 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 184 90 Op 2 1/0.244 + CDS 185753 - 188758 2989 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 185 90 Op 3 1/0.244 + CDS 188788 - 189831 600 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 186 90 Op 4 . + CDS 189684 - 190160 496 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 187 90 Op 5 4/0.044 + CDS 190184 - 191377 1272 ## COG1171 Threonine dehydratase 188 90 Op 6 . + CDS 191383 - 192693 1629 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 189 90 Op 7 8/0.000 + CDS 192732 - 193925 1592 ## COG0078 Ornithine carbamoyltransferase + Prom 194087 - 194146 2.5 190 90 Op 8 . + CDS 194166 - 195110 1178 ## COG0549 Carbamate kinase 191 90 Op 9 . + CDS 195125 - 195505 448 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 195532 - 195578 -0.5 + Prom 195511 - 195570 6.5 192 91 Op 1 . + CDS 195599 - 196918 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 196933 - 196972 5.3 193 91 Op 2 . + CDS 197012 - 197371 359 ## COG2005 N-terminal domain of molybdenum-binding protein 194 91 Op 3 6/0.000 + CDS 197422 - 198375 870 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 198406 - 198447 -0.9 + Prom 198397 - 198456 6.0 195 91 Op 4 1/0.244 + CDS 198496 - 200181 1551 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 196 91 Op 5 1/0.244 + CDS 200191 - 201069 1002 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 197 91 Op 6 . + CDS 201083 - 201664 758 ## COG2068 Uncharacterized MobA-related protein 198 91 Op 7 . + CDS 201678 - 202826 1079 ## COG0520 Selenocysteine lyase 199 91 Op 8 . + CDS 202842 - 203864 1031 ## COG0709 Selenophosphate synthase 200 91 Op 9 . + CDS 203880 - 204467 671 ## EF2566 hypothetical protein 201 91 Op 10 . + CDS 204487 - 204744 186 ## EF2565 hypothetical protein 202 91 Op 11 . + CDS 204732 - 205487 491 ## EF2564 hypothetical protein 203 91 Op 12 . + CDS 205451 - 206281 868 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 206468 - 206502 0.2 + Prom 206391 - 206450 10.4 204 92 Op 1 . + CDS 206523 - 206981 608 ## COG0716 Flavodoxins 205 92 Op 2 5/0.000 + CDS 207037 - 207876 961 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 206 92 Op 3 . + CDS 207869 - 209287 1508 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 207 92 Op 4 . + CDS 209308 - 212841 3802 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 212847 - 212884 6.4 - Term 212833 - 212872 6.0 208 93 Tu 1 . - CDS 212878 - 214293 1176 ## COG0168 Trk-type K+ transport systems, membrane components + Prom 214545 - 214604 7.3 209 94 Tu 1 . + CDS 214663 - 216180 2241 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 216194 - 216241 10.3 + Prom 216231 - 216290 5.5 210 95 Op 1 3/0.111 + CDS 216407 - 216991 566 ## COG1435 Thymidine kinase 211 95 Op 2 32/0.000 + CDS 217003 - 218076 1435 ## COG0216 Protein chain release factor A 212 95 Op 3 10/0.000 + CDS 218069 - 218902 239 ## PROTEIN SUPPORTED gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase 213 95 Op 4 1/0.244 + CDS 218946 - 219968 1321 ## COG0009 Putative translation factor (SUA5) 214 95 Op 5 5/0.000 + CDS 220044 - 221282 1570 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 221328 - 221379 6.3 + Prom 221329 - 221388 6.8 215 95 Op 6 . + CDS 221414 - 222043 860 ## COG0035 Uracil phosphoribosyltransferase + Term 222054 - 222097 7.1 + Prom 222069 - 222128 10.8 216 96 Tu 1 . + CDS 222149 - 222421 327 ## EF2548 hypothetical protein + Term 222570 - 222607 1.2 217 97 Tu 1 . - CDS 222495 - 222731 244 ## EF2547 hypothetical protein - Prom 222907 - 222966 74.3 + TRNA 222890 - 222962 75.8 # Thr CGT 0 0 - Term 222961 - 223006 15.3 218 98 Op 1 9/0.000 - CDS 223012 - 223338 347 ## COG4392 Predicted membrane protein 219 98 Op 2 . - CDS 223325 - 224032 788 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 220 98 Op 3 . - CDS 224029 - 224130 99 ## - Prom 224236 - 224295 9.8 + Prom 224122 - 224181 8.7 221 99 Op 1 . + CDS 224246 - 224797 555 ## COG1396 Predicted transcriptional regulators + Prom 224818 - 224877 4.5 222 99 Op 2 . + CDS 224910 - 226241 1034 ## EF2507 hypothetical protein + Term 226264 - 226316 7.1 + Prom 226259 - 226318 9.8 223 100 Op 1 . + CDS 226442 - 230080 3508 ## COG4932 Predicted outer membrane protein 224 100 Op 2 . + CDS 230143 - 231057 720 ## EF2505 cell wall surface anchor family protein + Prom 231163 - 231222 3.5 225 101 Op 1 . + CDS 231256 - 231957 444 ## EF2504 hypothetical protein 226 101 Op 2 . + CDS 231958 - 233394 1222 ## EF2503 hypothetical protein + Term 233398 - 233438 6.1 + Prom 233551 - 233610 7.1 227 102 Op 1 1/0.244 + CDS 233638 - 234825 1307 ## COG0772 Bacterial cell division membrane protein 228 102 Op 2 4/0.044 + CDS 234850 - 235209 449 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 229 102 Op 3 . + CDS 235206 - 235529 533 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 235613 - 235672 3.6 230 102 Op 4 . + CDS 235703 - 235783 90 ## + Term 235811 - 235871 14.6 + Prom 235858 - 235917 8.0 231 103 Op 1 32/0.000 + CDS 235944 - 236981 1381 ## COG1135 ABC-type metal ion transport system, ATPase component 232 103 Op 2 22/0.000 + CDS 236974 - 237660 842 ## COG2011 ABC-type metal ion transport system, permease component 233 103 Op 3 . + CDS 237675 - 238493 1118 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 238753 - 238812 9.0 234 104 Op 1 32/0.000 + CDS 238841 - 239656 751 ## COG0020 Undecaprenyl pyrophosphate synthase 235 104 Op 2 . + CDS 239653 - 240453 973 ## COG0575 CDP-diglyceride synthetase + Term 240491 - 240541 17.1 + Prom 240698 - 240757 9.1 236 105 Op 1 5/0.000 + CDS 240926 - 242095 630 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 237 105 Op 2 11/0.000 + CDS 242114 - 243580 1174 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 238 105 Op 3 . + CDS 243650 - 246160 2527 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 239 105 Op 4 . + CDS 246184 - 247035 726 ## EF2490 hypothetical protein 240 105 Op 5 . + CDS 247062 - 249515 2467 ## COG0812 UDP-N-acetylmuramate dehydrogenase 241 105 Op 6 . + CDS 249533 - 249931 401 ## EF2488 putative lipoprotein 242 105 Op 7 . + CDS 249990 - 251129 1391 ## COG0562 UDP-galactopyranose mutase 243 105 Op 8 26/0.000 + CDS 251155 - 252498 1072 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 244 105 Op 9 . + CDS 252498 - 253310 729 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component + Term 253322 - 253373 13.1 + Prom 253853 - 253912 10.7 245 106 Op 1 . + CDS 253973 - 254623 825 ## COG2102 Predicted ATPases of PP-loop superfamily + Prom 254625 - 254684 4.5 246 106 Op 2 . + CDS 254711 - 254938 423 ## EF2483 hypothetical protein + Term 254939 - 254992 16.1 - Term 254927 - 254978 15.7 247 107 Tu 1 . - CDS 254986 - 255087 56 ## - Prom 255214 - 255273 8.0 + Prom 254965 - 255024 9.2 248 108 Tu 1 . + CDS 255086 - 255817 643 ## COG0546 Predicted phosphatases + Term 256037 - 256073 4.1 - Term 256025 - 256061 4.1 249 109 Tu 1 . - CDS 256172 - 256915 816 ## EF2480 hypothetical protein - Prom 257057 - 257116 9.5 - Term 257014 - 257072 10.1 250 110 Op 1 . - CDS 257138 - 257938 847 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 251 110 Op 2 . - CDS 257935 - 259080 914 ## EF2478 hypothetical protein - Term 259121 - 259163 5.3 252 111 Tu 1 . - CDS 259184 - 260416 1293 ## COG4260 Putative virion core protein (lumpy skin disease virus) - Prom 260535 - 260594 9.9 + Prom 260537 - 260596 4.5 253 112 Tu 1 . + CDS 260624 - 262666 2381 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 262682 - 262728 8.7 + Prom 262695 - 262754 8.0 254 113 Op 1 20/0.000 + CDS 262782 - 263501 288 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 255 113 Op 2 2/0.178 + CDS 263485 - 264027 291 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 256 113 Op 3 9/0.000 + CDS 264035 - 264499 190 ## PROTEIN SUPPORTED gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase 257 113 Op 4 . + CDS 264496 - 265542 715 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 265779 - 265831 18.0 + Prom 265781 - 265840 11.3 258 114 Op 1 . + CDS 265861 - 267552 2188 ## COG0018 Arginyl-tRNA synthetase + Prom 267611 - 267670 5.4 259 114 Op 2 . + CDS 267693 - 268208 626 ## COG1418 Predicted HD superfamily hydrolase + Term 268214 - 268247 3.1 - Term 268200 - 268233 3.1 260 115 Tu 1 . - CDS 268289 - 268582 293 ## EF2469 Cro/CI family transcriptional regulator - Prom 268777 - 268836 6.7 + Prom 268690 - 268749 6.8 261 116 Tu 1 . + CDS 268790 - 269038 246 ## EF2467 hypothetical protein + Term 269161 - 269208 8.2 + Prom 269163 - 269222 4.3 262 117 Op 1 . + CDS 269249 - 270514 1224 ## COG0038 Chloride channel protein EriC 263 117 Op 2 2/0.178 + CDS 270564 - 270842 444 ## COG4476 Uncharacterized protein conserved in bacteria 264 117 Op 3 1/0.244 + CDS 270843 - 271625 1024 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 271631 - 271672 3.4 + Prom 271733 - 271792 6.4 265 118 Tu 1 . + CDS 271846 - 273681 2186 ## COG1217 Predicted membrane GTPase involved in stress response + Term 273706 - 273751 1.4 + Prom 273739 - 273798 9.4 266 119 Tu 1 . + CDS 273998 - 275767 2025 ## COG0514 Superfamily II DNA helicase + Term 275891 - 275946 9.5 + Prom 275910 - 275969 10.0 267 120 Op 1 3/0.111 + CDS 275994 - 276299 450 ## COG4838 Uncharacterized protein conserved in bacteria 268 120 Op 2 4/0.044 + CDS 276303 - 277511 1382 ## COG0772 Bacterial cell division membrane protein 269 120 Op 3 . + CDS 277544 - 280972 4026 ## COG1038 Pyruvate carboxylase 270 120 Op 4 2/0.178 + CDS 280989 - 282113 1011 ## COG2340 Uncharacterized protein with SCP/PR1 domains 271 120 Op 5 3/0.111 + CDS 282110 - 282544 222 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 272 120 Op 6 2/0.178 + CDS 282534 - 282884 440 ## COG4471 Uncharacterized protein conserved in bacteria + Term 282886 - 282949 16.1 + Prom 282893 - 282952 7.3 273 121 Op 1 14/0.000 + CDS 282983 - 283537 727 ## COG0742 N6-adenine-specific methylase 274 121 Op 2 4/0.044 + CDS 283539 - 284030 334 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 275 121 Op 3 . + CDS 284035 - 285087 471 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 285090 - 285148 19.5 + Prom 285097 - 285156 5.8 276 122 Tu 1 4/0.044 + CDS 285183 - 285827 652 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 285830 - 285889 4.7 277 123 Tu 1 . + CDS 285950 - 286453 469 ## COG2131 Deoxycytidylate deaminase + Term 286463 - 286505 2.2 + Prom 286530 - 286589 3.9 278 124 Op 1 4/0.044 + CDS 286776 - 288752 1302 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 279 124 Op 2 . + CDS 288810 - 289838 1181 ## COG1466 DNA polymerase III, delta subunit + Term 289839 - 289899 21.7 - Term 289824 - 289889 23.4 280 125 Tu 1 . - CDS 289890 - 290831 1248 ## COG1893 Ketopantoate reductase - Prom 290865 - 290924 6.7 + Prom 290872 - 290931 4.2 281 126 Tu 1 . + CDS 291021 - 291557 461 ## COG1607 Acyl-CoA hydrolase + Term 291563 - 291607 6.2 - Term 291596 - 291638 4.5 282 127 Tu 1 . - CDS 291644 - 291958 509 ## PROTEIN SUPPORTED gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 - Prom 292033 - 292092 5.0 + Prom 292047 - 292106 7.3 283 128 Op 1 21/0.000 + CDS 292127 - 293140 966 ## COG0306 Phosphate/sulphate permeases 284 128 Op 2 . + CDS 293153 - 293776 853 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 285 128 Op 3 . + CDS 293795 - 294472 578 ## COG3394 Uncharacterized protein conserved in bacteria + Term 294579 - 294628 15.8 - Term 294565 - 294616 16.2 286 129 Tu 1 . - CDS 294620 - 295450 874 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 295488 - 295547 10.8 + Prom 295492 - 295551 8.0 287 130 Tu 1 . + CDS 295632 - 296126 681 ## COG2190 Phosphotransferase system IIA components + Term 296134 - 296175 6.7 + Prom 296142 - 296201 10.4 288 131 Op 1 2/0.178 + CDS 296279 - 297388 1093 ## COG3589 Uncharacterized conserved protein 289 131 Op 2 9/0.000 + CDS 297363 - 298253 1181 ## COG2103 Predicted sugar phosphate isomerase 290 131 Op 3 3/0.111 + CDS 298276 - 299730 1991 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 299737 - 299781 5.1 + Prom 299732 - 299791 5.1 291 131 Op 4 . + CDS 299818 - 300666 1060 ## COG1737 Transcriptional regulators + Term 300674 - 300722 11.3 - Term 300662 - 300710 15.1 292 132 Op 1 1/0.244 - CDS 300717 - 301427 888 ## COG0406 Fructose-2,6-bisphosphatase 293 132 Op 2 . - CDS 301468 - 302094 742 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 302225 - 302284 7.8 + Prom 302207 - 302266 11.7 294 133 Op 1 4/0.044 + CDS 302314 - 303699 1678 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 295 133 Op 2 1/0.244 + CDS 303703 - 305034 351 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 305114 - 305155 4.0 + Prom 305037 - 305096 5.0 296 134 Tu 1 . + CDS 305176 - 306153 1334 ## COG0516 IMP dehydrogenase/GMP reductase + Term 306178 - 306237 17.7 + Prom 306208 - 306267 5.9 297 135 Op 1 . + CDS 306315 - 306647 209 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 298 135 Op 2 . + CDS 306644 - 307672 1053 ## EF2427 hypothetical protein + Term 307697 - 307749 13.1 + Prom 307725 - 307784 2.5 299 136 Tu 1 . + CDS 307807 - 309258 1383 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 309289 - 309348 9.5 300 137 Tu 1 . + CDS 309379 - 311103 2374 ## COG1109 Phosphomannomutase + Term 311144 - 311196 10.0 301 138 Tu 1 . + CDS 311209 - 311991 935 ## COG0345 Pyrroline-5-carboxylate reductase + Term 312004 - 312044 4.1 + Prom 312050 - 312109 3.6 302 139 Op 1 . + CDS 312129 - 312416 347 ## COG0640 Predicted transcriptional regulators 303 139 Op 2 11/0.000 + CDS 312468 - 313760 1425 ## COG0460 Homoserine dehydrogenase 304 139 Op 3 19/0.000 + CDS 313763 - 314818 1498 ## COG0498 Threonine synthase 305 139 Op 4 . + CDS 314815 - 315678 930 ## COG0083 Homoserine kinase + Term 315685 - 315726 9.2 - Term 315673 - 315714 9.2 306 140 Tu 1 . - CDS 315721 - 316578 802 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 316608 - 316667 6.5 + Prom 316567 - 316626 6.0 307 141 Tu 1 . + CDS 316683 - 317117 425 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 317134 - 317193 3.6 308 142 Op 1 9/0.000 + CDS 317220 - 317459 400 ## PROTEIN SUPPORTED gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 309 142 Op 2 1/0.244 + CDS 317485 - 317934 420 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 317945 - 317986 9.0 + Prom 317949 - 318008 6.4 310 143 Op 1 4/0.044 + CDS 318117 - 319091 1280 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 311 143 Op 2 7/0.000 + CDS 319120 - 321318 994 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 312 143 Op 3 11/0.000 + CDS 321318 - 321797 720 ## COG0319 Predicted metal-dependent hydrolase 313 143 Op 4 3/0.111 + CDS 321781 - 322182 381 ## COG0818 Diacylglycerol kinase 314 143 Op 5 16/0.000 + CDS 322196 - 323098 1233 ## COG1159 GTPase + Term 323103 - 323163 3.4 315 143 Op 6 . + CDS 323181 - 323966 719 ## COG1381 Recombinational DNA repair protein (RecF pathway) 316 143 Op 7 . + CDS 324008 - 325093 762 ## SSUBM407_1706 membrane protein + Term 325324 - 325366 9.0 + Prom 325516 - 325575 3.0 317 144 Op 1 . + CDS 325610 - 325795 81 ## 318 144 Op 2 19/0.000 + CDS 325734 - 326642 1164 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 319 144 Op 3 . + CDS 326644 - 328728 2791 ## COG0751 Glycyl-tRNA synthetase, beta subunit 320 144 Op 4 . + CDS 328768 - 328959 276 ## gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein + Term 328965 - 328999 4.5 - Term 328953 - 328987 3.5 321 145 Tu 1 . - CDS 328993 - 329925 1077 ## COG0706 Preprotein translocase subunit YidC - Prom 329957 - 330016 6.5 - Term 329968 - 330010 2.2 322 146 Tu 1 . - CDS 330092 - 330367 416 ## COG1254 Acylphosphatases - Prom 330489 - 330548 6.4 323 147 Op 1 . + CDS 330474 - 331250 206 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 324 147 Op 2 . + CDS 331270 - 331707 412 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 331768 - 331805 -1.0 + Prom 331709 - 331768 5.3 325 148 Op 1 38/0.000 + CDS 331891 - 332676 1336 ## PROTEIN SUPPORTED gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 + Term 332690 - 332751 2.4 + Prom 332698 - 332757 2.3 326 148 Op 2 24/0.000 + CDS 332782 - 333663 582 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 333782 - 333824 3.1 + Prom 333750 - 333809 3.5 327 148 Op 3 33/0.000 + CDS 333924 - 334646 1036 ## COG0528 Uridylate kinase 328 148 Op 4 . + CDS 334650 - 335207 949 ## COG0233 Ribosome recycling factor + Term 335232 - 335272 3.4 + Prom 335318 - 335377 12.7 329 149 Op 1 41/0.000 + CDS 335577 - 336347 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 330 149 Op 2 24/0.000 + CDS 336362 - 337648 1570 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 331 149 Op 3 19/0.000 + CDS 337645 - 338880 1547 ## COG0520 Selenocysteine lyase 332 149 Op 4 6/0.000 + CDS 338867 - 339334 655 ## COG0822 NifU homolog involved in Fe-S cluster formation 333 149 Op 5 . + CDS 339353 - 340747 1581 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 340759 - 340805 11.2 334 150 Op 1 . - CDS 340842 - 341984 657 ## COG0582 Integrase 335 150 Op 2 . - CDS 342023 - 342757 471 ## gi|69245858|ref|ZP_00603675.1| Helix-turn-helix motif - Prom 342805 - 342864 6.3 + Prom 342802 - 342861 8.8 336 151 Op 1 . + CDS 342989 - 343264 334 ## gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family + Term 343279 - 343340 15.4 + Prom 343279 - 343338 6.0 337 151 Op 2 . + CDS 343362 - 345359 1025 ## Dred_0377 hypothetical protein + Term 345398 - 345438 3.1 - Term 345390 - 345423 2.0 338 152 Tu 1 . - CDS 345435 - 345770 264 ## gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein - Prom 345834 - 345893 6.3 + Prom 345791 - 345850 4.6 339 153 Op 1 . + CDS 345899 - 346114 236 ## gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein 340 153 Op 2 . + CDS 346151 - 346516 391 ## Bcell_3752 hypothetical protein 341 153 Op 3 . + CDS 346553 - 346879 285 ## gi|307292468|ref|ZP_07572319.1| conserved domain protein + Prom 346936 - 346995 5.8 342 154 Tu 1 . + CDS 347033 - 347758 360 ## gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 + Term 347822 - 347863 10.1 + Prom 348168 - 348227 10.8 343 155 Op 1 27/0.000 + CDS 348267 - 349859 1589 ## COG0286 Type I restriction-modification system methyltransferase subunit 344 155 Op 2 . + CDS 349852 - 350070 314 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|308151759|gb|GL476263.1| GENE 1 83 - 1297 1232 404 aa, chain + ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 1 340 1 369 493 190 31.0 4e-48 MTTSQMIADFTTFAIQAGGWMELDRLYLQNRLLSMIGEQELGEVDIRPVATPAADLAEQL CQVASANKLVKTEQQKEQFMVQLMDLLTPPPSVVNAFFAQHYAKEPQEATEYFYQLCQKN GTVIEQEEPVVFSTVYGDFLANKVHSEAPKATLSAQSYPRCEWCMATEGYQGSQQFPATT NHRVIRMNLDGESWGFSFVKQAQYQQQGVIAFEKHQAAKRSVKTFQQLLKIVEVFPHYFA GIDAVFEQNEHVYYQTGLQQFPLAEASISEYVELANYPLINAGMVNWPVATFRLEGPNAS EVAQAANDIFEQWQMLKLPTDEIQIVARRKELLYVMDLIFSRPQAKPSLTLAEVQGLTTW NNQKTQALETVASAYQQRLKEASAFAETSEGKAAFLAMVAPVTH >gi|308151759|gb|GL476263.1| GENE 2 1369 - 3129 1937 586 aa, chain + ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 585 1 579 579 527 48.0 1e-149 MAYQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAK AINCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEY KVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRIST QDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQV TGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV QPNKHNTPETANQDGSAEGNPELADLQNQIGQLKKELAELKKHGVAAKEADAPRQQARPQ ASKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTLSVTQRAMLKASEPVAASPKGI VVAFDYEIVCARATDDEEMQLAFNNNLSRLMDYTPEMVCITRESWPKLRQSFINQNQGSL NHSEPENEMARLADEPPVTNEHSQENPVVDEAIAMFGEELVEVLDD >gi|308151759|gb|GL476263.1| GENE 3 3150 - 3464 555 104 aa, chain + ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 102 1 98 99 93 58.0 1e-19 MMRGMGNMQGMMKQVQKMQKEMAKAQEALNEKEFIGEATNQLVTATFTGDRTMKDLIIKE DVVDPEDVDMLQDLVIMAVNDALVKIEKETEATLGKYTKGMPGF >gi|308151759|gb|GL476263.1| GENE 4 3799 - 4329 609 176 aa, chain + ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 175 7 172 174 185 58.0 4e-47 MEKNRIHRVTLLALMIAMDVVLSPLMRIEGMAPMSSVMNIIAGVLLGPLYGTLMALVCGL IRMTFLGIPPLALTGAVFGAFFAGLFYQWGQKLGWSMLGEIFGTGIIGSLLSYPVMVWFT GSKQNFYWFIYTPRFIGATLIGSVIAWLVLVKLKETRVFKQTQELFLGGYFYENKR >gi|308151759|gb|GL476263.1| GENE 5 4313 - 5131 828 272 aa, chain + ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 6 271 3 265 267 244 47.0 2e-64 MKTSVKFETIFPLTTAPLIQCITNEITCESMANALLYIDAKPIMADDSREFPQLFQQTSA LVLNLGHLSQEREQSLLAASDYARQVNKPTVVDLVGYGASDIRSEVGEKLVHNQPTVVKG NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQDVLVS QEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVAAVSYFNLCGEKAKTKS QGLADFRQNTLNQLSLLMKEKDWFEAVKGRVL >gi|308151759|gb|GL476263.1| GENE 6 5128 - 5763 573 211 aa, chain + ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 207 3 209 210 240 60.0 1e-63 MREQLKVYLVTGRYDFSDTEFLKRIETACRSGVTLVQLREKEVSTRRFYELAVKVKAVTD AYQIPLIINDRVDICLAVDAAGVHIGDDELPVAFVRKLVGSTKIVGVSAKTVARGVEAEN EGADYLGVGAIFPTTTKDSPLTSLQTLSEIAAAVTIPVVAIGGIKEENIEQLMGTGVAGV SLVSEIMLAEQITEKVQELMRVTERMLEVRK >gi|308151759|gb|GL476263.1| GENE 7 5760 - 6590 1067 276 aa, chain + ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 9 269 6 266 267 256 53.0 4e-68 MTEYNLTPQVVTIAGSDSGGGAGMQADLKTFQARQAFGLNIVIALTAQNTYGVQDSLPIP SSFIDAQFQSLAADFKIGAAKTGMLADSERVEAVVRNLQKVDFGPLIVDPVMVAKGGHHL LEAEAVQTIKEQLLPLATVVTPNLPEAEVLLETTIKTEQEMQTAAKKLQQLGTKNIIMKG GHSTNQQAADYVLMEDGSSFWLSAPRIVTKNTHGTGDTFSACIAAELAKGTPLEAAIVIG KQFIQGAISQAISVGHGHGPTNHWAQLTQDIQVIKA >gi|308151759|gb|GL476263.1| GENE 8 6684 - 7040 411 118 aa, chain - ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 112 3 111 115 162 72.0 1e-40 METRTYAIGVEATMDVIGGKWKPIILCNLRHGAMRPSDLKRGITGISQKMLTQQLRELEE DNIIERKVYNQVPPKVEYYLSDYGQSLSAVLDNLCNWGESHVAHLQEQGQEIYLKCED >gi|308151759|gb|GL476263.1| GENE 9 7185 - 8375 1259 396 aa, chain + ## HITS:1 COG:L131423 KEGG:ns NR:ns ## COG: L131423 COG2814 # Protein_GI_number: 15672314 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Lactococcus lactis # 3 392 2 392 393 423 70.0 1e-118 MEKKISPNLTLFALAINAFAIGSTEFISVGLLPMIVKSFHISLSQAGLTVSLYALGVTIG APLLTILTGKWNRRSLMLGIMLLFISGNLIAAFAPTFIILLVGRILSALAHGIFMSVSTV IAADVVLPSRRASAIAIMFTGLTVATVTGVPLGTFIGQQTAWYMSFLFIASIGLVGLIAS YFLVPKNLPIPGKVDLKGITRIFTNKPLVFSFLITAFGYGGTFAAYTYLSPLLENLGFSA NAVVIILVVYGVMVAIGNTVGGHWANKKPLDSLVKMFSLLILSLVFLFITVLMDNSLLGL LASLMLGLFAFMNVPGLQLYVVELAEKYVPEDITLASAFNIAAFNIGITVGSMTGGVVTD HLSVTYTPIFGGFIVLIAVLFVLYIRKQEEQKNNYL >gi|308151759|gb|GL476263.1| GENE 10 8426 - 9787 1482 453 aa, chain - ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 451 3 449 454 325 48.0 1e-88 MEQKNVRLFPAVLATGIMSFAGVLIETAMNVTFPTLTKEFGVSTGTVQWVTTIYLLVISI MVPLSNYLLKTYSLRRLFIVANLFFLIGLAIDVYSPSFSILLLGRLFQGASTGIALPLMF HIILNFTPLEKRGTMMGVGTLTTSIAPAIGPTYGGILTSSLSWHAIFLFLIPVLLLSLFM GLSAIPEIPVKKTTTLDLVSLIGIALLFSGLLMFLSKIGTLFGWLSLLAAVIGFVIFYKR ATTAEQPLVRLTILKNPAFVLFLCGFLVCQFLLLGISFVLPNFVQIVLGKNAFVAGLVML PGATVGAILAPLSGRVLDQYGAKKPILFGLSLATIGWLALTILLEMPVLLGFVAGHVTYM IGLGFAYSNMMTTGMSLLEEKDFGDGNTLFNTLQQFSGAIATAIVATIINIAQDHADNFA QGTTMGSLISLIFLLTLLVIVLIACWNYFRKKA >gi|308151759|gb|GL476263.1| GENE 11 9951 - 10736 863 261 aa, chain - ## HITS:1 COG:no KEGG:EF2771 NR:ns ## KEGG: EF2771 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 432 99.0 1e-120 MGKTLTGFHLKVIGVISMVFDHLLQFFSFLGVPSWFGWIGRIAAPIFLFESSEGFIHTSN RRKYMFRLLLGFWIMGILNGILNAYFSTGGLIINNIFGTLFLGTVYMQSMDYFKQKQIGK GLLWFIVPLLISALPLVVFSSPDILSNPAILIGFQIFNLIVPSLMMTEGGFLFVLLAVAF YLFHGKKWLQISAIGVVALISAASYNFQELFGVNHQWMMILAAIPIVLYNGEKGRGMRNF FYIFYPAHIAIFAIISFFMQR >gi|308151759|gb|GL476263.1| GENE 12 11110 - 11673 727 187 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 177 2 178 186 149 53.0 2e-36 MKKWSLQQVVLLAFLAFLFGGVFMGAGFLYALLNAALLPLGLSPFANELLFGMWTMVAPI AAMLIPRAGSAVLAEVLAALAEMLYGSYFGPSVLISGVIQGLGSESGFFVTRYKRYDTLT LFYSAIGTTIFSYVYEYFKFGYGNYGLGMNIALISVRFVSICFFGIFLTKVILRMYQSAQ GLAVKAK >gi|308151759|gb|GL476263.1| GENE 13 11670 - 13028 1080 452 aa, chain + ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 4 452 3 447 461 307 41.0 2e-83 MNSIQLKAVSFSREQPLFEKTNLAIPQGTFSLLIGDSGSGKSTLLRLIAGFAPLDYQGEI LIEGIERRQLSTREKAQKIGMLFQNPSQQFTMKTLERELIFALENLGIPPEEMNRKIQTA LQLVQTQTLFTRELATLSGGEKQKAALTVLLAMNPDILLLDEPFASIDPTSRKQFIQILA RLHQAGKTILVCDHDFSDYADVVDQVVTLKNGQFEKQPLMFIKTKPQTFQLTTSVVKQPM LQLKNFRLSQEKRVLLEEKEALLFKGITTLTGPNGAGKSTLLKAIVQRQKYQGKMFLAGR RLRASKKLYQHMTLAVQQANRQFVTLTLREELLFGQNMTAEKRRKQEEALTFLGLKEKLE HSVFQLSEGQKKMVQLISLLSLDLDCLLLDEPFAGLDERACNYFVEWIKEKSAQQDFLIV THRLEPLSGVSNYRIELLHQQLIIWQEGTTCK >gi|308151759|gb|GL476263.1| GENE 14 13019 - 13672 364 217 aa, chain + ## HITS:1 COG:no KEGG:EF2768 NR:ns ## KEGG: EF2768 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 217 1 217 217 350 99.0 2e-95 MQIKQTNAAIYASLILILTFELSFSQSILANLAVFMGCIIFLIGQRKSRLLLWLFFLPLL PAIGTFWSIYLHGTSSQQAWLLFSRTYAFAGLGLAFAVGVDFEELLLLLEQKGLAPNFVY GILVVVHALPEVKREINDLKEASLLRGKTFHFWSPMLYVKTLLVAVSWRDKYTEAMSAHG YEEGATRSRKEHFVSAKVSLGLAILIIIFTNLFIFLT >gi|308151759|gb|GL476263.1| GENE 15 13684 - 14346 883 220 aa, chain + ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 219 55.0 3e-57 MTFTEQAKEQAQASWQGSFQHPFITELHEGTLSSTIFRYYLIQDHYYLKHFSQLYRLIAA QTQQPRLKKLLLTNAENLALGELAIRETFFEELAITEEEVAATPIAPTAYHYVSHMYRQL IEGTPKTAAASMLPCSWLYQEIGAQLVKQHSPEPLYQRWIETYAGEEAYQHVQEERQLLD QLYEESSPQEQAAMITAFVISSEMEYAFWEMAYTHETWIG >gi|308151759|gb|GL476263.1| GENE 16 14522 - 15118 661 198 aa, chain + ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 198 1 198 198 299 74.0 2e-81 MNYPEPIAKLIESYMKLPGIGQKTATRLAFYTIDMKEEDANAFAKALISVKRDLHFCSIC GNITEEDPCEICQDKNRDRSIILVVEEPKDVMAMEKMREYQGLYHVLHGVLSPMEGTGPE DVNIASLIKRLHDDEVKEVIIATNATTEGEATAMYLSRLIKPAGITVTRLAHGLSVGSDI EYADEITLLKAVEGRREI >gi|308151759|gb|GL476263.1| GENE 17 15327 - 15965 829 212 aa, chain + ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 2 207 3 207 210 218 56.0 7e-57 MQGIFITFEGPDGAGKTSVLKEVSERLAKESKRKIVTTREPGGIPIAEKIRTVILDPRND RMDERTEALLYAAARRQHLVEKILPALEAGHLVLCDRFVDSSLAYQGAGRRIGIAPIASI NAFATEGVSPDFTIYLDVDSDTGLRRIQENRTQQIDRLDSEGLEFHQRVRHEYLKLAEEN PQRIKKIDARMSLELVVEATYQAIIERYPENF >gi|308151759|gb|GL476263.1| GENE 18 15985 - 16314 512 109 aa, chain + ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 143 59.0 7e-35 MKIILAIVQDKDSNRLANEFIDANIRATKLSSTGGFLKAGNSTFIIGIDDERVDETLALI KETCQSRKQYVSTPVTLDITMDGQIPYPVEVEVGGATCFVLPVEGFHQY >gi|308151759|gb|GL476263.1| GENE 19 16316 - 17266 865 316 aa, chain + ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 5 311 6 326 329 222 38.0 7e-58 MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV KVFKEKEQQALSFDLLMVYYRQLLEESVATQQAKKVTEEQAERLALILKARQKWTANVSW QNVCEQLVIQMIHPKS >gi|308151759|gb|GL476263.1| GENE 20 17383 - 18222 985 279 aa, chain + ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 249 1 249 275 321 65.0 8e-88 MVEVVGVRFREAGHIYYFAPGKSEYIYNEKVLVESQQSKQLATVAIPKKTVDSDDLPEDL KPILNKATANDLEKEQKNLADAEAAKSIANEKIRAHDLKMKLVRVEYTFDRSKMIFYFTA DGRIDFRELVKDLAAIFRTRIELRQIGVRDEAKILGGIGPCGRQLCCSTFLGDFMPVSIK MAKDQGLSLNPVKISGLCGRLMCCLKYENDEYEAAKKELPDYGKEVITPDGKGKVVGLNL LSRIVKVRLHGREIAADYDYEEIKEATAKVAAEKGDQNG >gi|308151759|gb|GL476263.1| GENE 21 18215 - 18562 418 115 aa, chain + ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 109 1 104 107 75 40.0 3e-14 MDKRSLYDGLNSLETDLDSSVTQLREIKAALHELVEKNTTLEIENQRLREHLQELNKLAG NTTETEKQELSKSRMNLEKLYEEGFHVCNILYGSRRENDEECAFCLDVIYGERTR >gi|308151759|gb|GL476263.1| GENE 22 18674 - 19546 918 290 aa, chain + ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 4 290 19 302 302 294 54.0 1e-79 MQKQKSFDKQTTKGKLYLVPTPIGNLEDMSIRCLNILKEATVIASEDTRNTQKLLNHFEI TTPQISLHEHNYKERIPQLITRLLNGETIAQVSDAGMPSISDPGHELVTACLEEELAVIA LPGPTAGMTALIASGLLPQPFTFYGFLPRKKKEQKDVLSALKEERPTQIFYESPYRIAKT VATFAEVYGQERPAVICRELTKLHEEYLRGTLGELTEYLAENTLKGECCLLVSGFTGEKE TIAAMPAISLKEHVQVLMEEEGRSSKEAIKEVAKLRNVKKQEVYKEYHSI >gi|308151759|gb|GL476263.1| GENE 23 19561 - 20223 212 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 193 1 199 223 86 32 1e-15 MSNLLRAEGVSYQVNGRSILSDIDLSFETGSNTTIVGPSGSGKSTFLKILSSLLSPTEGE IFYQEAPITTMPIETYRQKVSYCFQQPTLFGETVYDNLLFPFTVRQEAFNQEKVVALLQQ VKLPAAYLEKKIAELSGGERQRVALLRNIIFVPDVLLLDEVTTGLDEESKQIVNQLLTQL NKEQGVTLVRVTHDTEEIQQAQQVIRIVAGKVAPTDGFSS >gi|308151759|gb|GL476263.1| GENE 24 20207 - 20965 704 252 aa, chain + ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 5 252 6 253 259 261 60.0 9e-70 MDLAVNNLSLFFSAMLVVVALIISTKEKLGFTKDIIISVIRAVIQLVAVGYLLKYVFQVN NLILTLIMVLVIVSNAAFNAKKRSQQLQKGFLISFIAIGCSTGITIGILIFSGSIKFIPS QIIPISGMIASNSMVAIGLCYRNLDTLFQNQRQAVMEKLALGATIKLASLPIIQQSVKTG MAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAIKYQIMVTFMLLSATSIGSVIATYLAY KGYYNQQKQLVV >gi|308151759|gb|GL476263.1| GENE 25 21091 - 22209 1249 372 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 357 2 354 364 431 60.0 1e-121 MMSELRFPLKKDTSRKIIHIDMDAFFASVEERDHPELVGHPLVIARHPSDTGGKGVVTTA NYIARQYGIHSAMSAQKAYELCPSAIFKPGNYQKYSEISQEIREIFRRYTDVIEPVSIDE AYLDVTENKVNSKSAIKIAKMIQYDIWHELQLTCSAGVSYNKFLAKLASDFQKPKGLTVV LPEEAEDFLKALPIEDFHGIGKKTVPKMHELGIFTGADLYKQDEMTLIRLFGKMGYSLYR KVRGIHDAPVQVTRDRKSVGKEHTYGTPLTTEEQVTAQLRQLAAGVERALQRVQKHGKTV VLKVRYTDYTTITKRVTLPEYISKKEELFYQANLIWEDILGLEQGIRLLGITLTNLDPLA YENIVLPLWEKS >gi|308151759|gb|GL476263.1| GENE 26 22254 - 22850 564 198 aa, chain - ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 196 1 195 196 283 67.0 1e-76 MRNPKPQEWKTEDYSQKKIADYKAFNFVDGEGVRNSLYVSGCLFACEGCFNKAVQNFNYG TPFTESLMNQIIEDLSHDYVQGLTLLGGEPFLNTDVCLSVVKRVRETFGSAKDIWSWSGY TFEELLLETPDKLELLHSIDILVDGRFELAKRNLNLQFRGSSNQRIIDVPKSLAAGKAVI WEKCHDAETSYEQIKKSI >gi|308151759|gb|GL476263.1| GENE 27 22883 - 25066 1910 727 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 17 725 15 722 732 1198 79.0 0 MMKITDEKAEDVNLSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSI VADVNREIAERFTNNVKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINV SIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYH DLDYHPYTPMTNCCLIDFKGMLNNGFKIGNADVESPKSIQTATAQISQIIANVASSQYGG CSADRIDELLAPFAERNYEKHLADAQEWIEGEERQKAFARKKTKKDIFDAMQSLEYEINT LFTSNGQTPFTSLGFGLGTNWFEREIQRAILQIRINGLGIEKRTAIFPKLIFTIKRGVNA QPTDPNYDIKQLALECATKRMYPDVLNYDKIVELTGSFKVPMGCRSFLQGWKDEQGEEVN VGRMNLGVVTLNLPRIALEAQGSQEKFWQILNERLAIVKDALVYRVERVKEAKPANAPIL YMYGAFGKRLATQDAVDELFKNKRATVSLGYIGLYEVASAFYGGAWEDNQEAKNFTLDIL KELKKNADNWGNEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVENITDKEYYTNSFHYDV RKNPTPFEKLDFEKDYPKYCSGGFIHYCEYPMLQQNPKALEAVWDYAYDKVGYLGTNTPI DHCYACGFEGDFHPTERGFECPECGNHDPKTCDVVKRTCGYLGNPQARPMVHGRHKEISS RVKHLKN >gi|308151759|gb|GL476263.1| GENE 28 25472 - 26239 290 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 116 31 1e-24 MKKIVEVNHVSKTYGRLNNKTEVLDNISFTVDEGEFVGIMGPSGAGKSTLLNVLSSIILP TAGIVRIAGQDILKMRDNQLSDFRRNEMGFIFQSFNLIDTLNVKDNILLPLAVEKVSLEE MDKRLLHVTSILGIQELLSAYPPEISVGQKQRVAAARALITNPKIIFADEPTGSLDSKSA TELLKYLAEINLHDDATILMVTHDPYTASFCNRILFIKDGAIFSEVVRQGSRKEFFNRVI DMQATIGGGGRANDF >gi|308151759|gb|GL476263.1| GENE 29 26229 - 28325 1870 698 aa, chain + ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 693 3 642 646 190 25.0 8e-48 MIFKLSLKNLKAHVPNYLVYYISMTFAAVVYYCFRAIAYNQPLVAGAGRDIEIKRSLGLG STLVTIIILGFMLAANRFFIGKRSQEIGLYRLIGLRKSQVSLIFLVENLVLGFVSLINGI ILGVIFTKLFSMILAKVMFLEVPSFFYISWRSVIETGVAFAFMILIVCLRSIWMIYRYPL SQLMHQEKIGQINYSRLTKRRQFLGILGPICLLAGYFIAFDFRNLATGIVYKQLNDSLDI SIPMIITLTPFIILGLCVVGTYLFFRYTMYFIIRLFNHRKKWYYQDLRMITLGNAKRYLF KSSKTLTGLTLLIATALSGIGVMVFVYTISMHTVNSDGPVDFLVSQESYPKLKKVLDEAK DTKIKNEVTLSYKITGIERSLRIGQAQEEQETIEAVNVLSFSNYRNYQKINPYLNDLHLK NDQSVIYMDSFTNILSGMSRYESKLQFVEGEKAQLQQVLPNYLGNFLLQYSLPTIVVSDA LYQKVTKNSIQYQINAVNVDTKSREKLYEAVNKQIATEWQAPILYKYGKNNQQLSGFAKQ MPNEEAKNTQDDVTETWRLNMNDRYASLRYERKINGLTLYVSMFVAILALFITGSILMLR QLFSAVSERQDYVTLKRMGVSSKGITKQIYRQNSLIFFPPMVIGILHTTFAIYLLSQFIK SPGYLLVYLSCGILIIVYLIFYILTSAIYARMIRHILF >gi|308151759|gb|GL476263.1| GENE 30 28529 - 28678 146 49 aa, chain + ## HITS:1 COG:no KEGG:EF2750 NR:ns ## KEGG: EF2750 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 67 100.0 3e-10 MKTTFQKILNNESLKFIGKTLFYSFIVIALIYLYHYKNINGGTFIYNEF >gi|308151759|gb|GL476263.1| GENE 31 28693 - 30213 1970 506 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 504 6 514 516 487 50.0 1e-137 MEKVINMIQTIDEWARKEPQRPVYLTEEKVSTYGELKEKSDNLAAYLAELKTDKSAIVVY GELDFEMIVSFLGASKAGFSYIPIDAHTPKERIELILNVAKPTAVIAVHEWPELAAEVPV ITAEELTEMMMHAPRHAPALTPVTGASNYYIIFTSGTTGVPKGVQISHDNLVSFTNWLLQ DFGLEEGARFLAQAPYSFDLSVMSIYPALALGGSLTPLPNEIINDFKQLFTRLPQLTIDV WVSTPSFIELCLMEPSFDGEHLPALRTFLFCGEELPKLTAEKLAARFPTAHIYNTYGPTE ATVAISAIEITQEVLKSVQRLPIGYVKEDTQIYIMEGMSKLPAGEIGEIVIAGPSVSKGY LNNPAKTAEAFFQLDGVPAYRTGDAGKLVDNLLQYEGRLDFQIKLHGYRIELEEVDHHLT NVSYVKQAVVVPKYQGNKVQQLIAYVVPQAHEFSSDFQLTKAIKQELATLTMDYMIPQKF VYVEQLPLTSNGKIDRKGLMNEVNAT >gi|308151759|gb|GL476263.1| GENE 32 30210 - 31415 1027 401 aa, chain + ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 4 401 7 412 413 359 48.0 4e-99 MMNFPHMIPYNAPYYFVLLIAALLPMILTLAIKGTRWPWYQTLVTLVFLYISFGGEFWQQ GVALIVYVIYQTLLTWGYAAYRKNKNAGWVFYLAVFLAILPLVWVKVSPFMTGKTTLLGF LGISYLTFKAVQVVMDLRDGVMKEYHPFRYIQFLLFFPTISSGPIDRYRRFEKDLKNPPS AEKYLDFLEKGIFYLFLGFLYKFIISHYLGGVFLPHVEKMALAQGGLSWWTVGYMYNYSL YLFFDFAGYSLLAVGTSYLMGYDTPMNFNKPFLSWNIKEFWNRWHMTLSFWFRDYIYMRL MFFLMKKKVFKSRIVTSNIGYFALFLIMGIWHGLTWFYIAYGLYHATLICVTDAWLRFKK KHKDKIPSNKFTHAFAVFLTFQAVCVSFLIFSGFLDKLWFK >gi|308151759|gb|GL476263.1| GENE 33 31448 - 31684 515 78 aa, chain + ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 1 78 1 78 78 82 65.0 2e-16 MNIQETVLNILEDITGTDEVVNNQDIQLFEEGLLDSLATVQLLVEIEGQLGIQVPVSDFD REVWGTPKQIIQQVEALQ >gi|308151759|gb|GL476263.1| GENE 34 31684 - 32958 1369 424 aa, chain + ## HITS:1 COG:lin0970 KEGG:ns NR:ns ## COG: lin0970 COG3966 # Protein_GI_number: 16800039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Listeria innocua # 4 411 2 413 424 280 36.0 3e-75 MSRKKRLIRILGPVLCSAVLVAVFFFAPFRINLTSEKTLKEASTSMAPNVLKGNVIKNKA VASGKYVPFFGSSELSRFSAFHPSVLSEKYQRNYRPFLLGEAGTQSLTQAMVIHSMGDAI ANKKAVFILSPQWFVKKGVPNDSFGAHYSQLQTYQWLANLTELTSGDQYLAQRLTKFPVV QKDKVLMETLANLQAGQLPQRSQRDYFIMNLRFLNREDELFSQIGMVSREPIVEKDMKQL PATYNFNELDQLAGKIAAKAINNNKFEISNGFYRQRIKPVLPKLAHSQKKWDYRFSPEYG DFQAALEQLAEKNVDVLFVIPPVNKRWSDYTGLSQDMLQQVARKLKYQLQEQGFTNIADF STCSNERYFMADTIHLGWRGWLAVDRQVDEFMKQPASKKLAYQIDDRFYQTDWQQQNPLV LPQF >gi|308151759|gb|GL476263.1| GENE 35 33171 - 34253 1322 360 aa, chain + ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 8 358 10 359 361 450 60.0 1e-126 MDAKEEKMLIDLTSAKGIAGNEDEVRSLFKKYAAPYADKFLYDGLGSIIAKNVGDKEGPK VYISGHMDEVGFMVTQITEKGFLKFQTVGGWWGQVMLAQQVQIKTTTGKVYHGVIGSKPP HVLTAEVRNKPYEIADMFIDIGASSDQQVAEWGIHPGDMVTPYIDYRRMNDTKFLLAKAW DNRIGTAVSLKVLENLATEGHPNILFAGSDVQEEVGLRGAQTSTHLVNPDIAFALDTGTA GDTPGMTPKEADSVLGEGPQILIYDASMIPHKKLRDFVIQVAEENNIPFQYTVITGGGTD AGRMHLTRNGIPSLAITVPVRYLHSHTSVIHEDDYFNTVKLVTEVVKRLDKETVAKLTSY >gi|308151759|gb|GL476263.1| GENE 36 34274 - 35065 837 263 aa, chain + ## HITS:1 COG:no KEGG:EF2743 NR:ns ## KEGG: EF2743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 429 98.0 1e-119 MKSLVTNSQHRANARRALDGQWGIMAWLTFLGVVLQSFLTSIVQNLFSGENQVFQSSFAA VLLQIFVLFALSYALYYAALKVLRGEKMRVNILMSVFQGKYYGPLFVVNLLQKVLERVIG LLFLLPILFGAGTTLYFKLMFNTVTPEEIQAFFLNDFSFFLAFGVASILIFLIGLFVSGV FQFAVWLRFDNPELPIMMALKQALYLMKNRFWQYLCLQFSFIGWYIVGFLAIGIGLLWVI PYNYVALASFYQIALEEKGLAEE >gi|308151759|gb|GL476263.1| GENE 37 35211 - 35951 1037 246 aa, chain + ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 240 1 249 259 265 57.0 5e-71 MKLTVLGCLGAYPYKGEGTSSYLLESEGFHLLIDAGSTTLVRLENYLDPLKLDAVILSHY HHDHIADLGVLQYYRQLYPTLEPTPILPIYGHTQDQMHFKELTLSNVSEGKEYFEAEELA VGPFLITFMETIHPVTCYAMRIVEKATGKVFVFTGDSGYLASFEDFAKDADLFLADTYLF EGNERHHAHFTSREAGEIAKAAQVKQLMLTHLPQHGSLEQLREEAQNYAGTEIPVTLAQP DLTVEI >gi|308151759|gb|GL476263.1| GENE 38 35984 - 36988 1150 334 aa, chain + ## HITS:1 COG:BH0683 KEGG:ns NR:ns ## COG: BH0683 COG0095 # Protein_GI_number: 15613246 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus halodurans # 1 334 1 330 330 402 60.0 1e-112 MIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDE HGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALHDLGVEGAELK GRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKVRKDKIESKGIKSVRS RVTNIKPFLSEDKQDMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYR NWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTG VKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY >gi|308151759|gb|GL476263.1| GENE 39 37604 - 38293 861 229 aa, chain + ## HITS:1 COG:SPy1391 KEGG:ns NR:ns ## COG: SPy1391 COG4122 # Protein_GI_number: 15675315 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 227 10 233 235 226 52.0 3e-59 MRNEMMHRPVVKPELVEYMRTKQKKLPGELGAVEAEANEAGVPIIPHETVVFLQFLLGQL KPKNILEIGAAIGFSSSLMAQFVGEDGHVTTIDRFDVMIKKAKKTYQRLDLEEKVTLLEG QAAEILPTLEGPYDFIFMDSAKSKYIEFLPECLRLLPVGGVLMVDDVFQAGTILDPAEEV PKKNRAIHRKLNQFLDVVMAHPDLTSTLVPLGDGVILITKEKETIILDS >gi|308151759|gb|GL476263.1| GENE 40 38534 - 39097 690 187 aa, chain + ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 2 187 3 188 188 235 55.0 3e-62 MNLINQKLFDFECDAYHDGEFTRVSTEDILGKWSIFFFYPADFSFVCPTELGDMQEHYAH LQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGMAYR ASFIVSPEGDIKSYEINDMGIGRNAEELVRKLEASQFVAEHGDKVCPANWQPGEETIAPS LDLVGKI >gi|308151759|gb|GL476263.1| GENE 41 39194 - 40876 1961 560 aa, chain + ## HITS:1 COG:FN1984_1 KEGG:ns NR:ns ## COG: FN1984_1 COG0492 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Fusobacterium nucleatum # 3 315 2 315 332 355 58.0 9e-98 MTEEIYDLIIIGGGSAALSAGIYAGRAMMDTLIIEKDKIGGQVTTTSEIVNYPAIRHTTG PELMEEMRIQAQDFGVAFTKDEIIDVDFSQTIKTVQSASQTYQAYAVLIATGASARKIGF PGESEFTGRGVAYCSTCDGEFFQGLDIFVIGGGYAAAEEAVYLTRYGKSVTMIIREPDFT CAKLTAEAAKNHPKIKIVYNTEVKEITGDDFVRKAVFVNNQTGEETVYEAPKDSTFGLFV FAGNKPSTEIFEGKIALDRGYVPTTENMETNIPGVYAAGDLRIKELRQIVTAVADGAIAA THAQRYVTEQKTQAGQPIVTKRMTERLANQSAPETSSQQPKEKQPAKVTGKHQWFPESMR QQLSGIFAKLTKKVTLLQFLDASDEKSLELQSFLTEFASLDQKITLETILKDTEPAKELL YGIEKMPSVVLLDTAGNYTGIKFSGIPSGHEVNSLVLAVYNVGSEGQPLEASLQKNILAL PKRKIEIFVSLTCHFCPDVVAACQRIASINPHVEAEMVDISLFPELKKEKKIMSVPAMLI DGEQMIFGSKTMTEIIEALA >gi|308151759|gb|GL476263.1| GENE 42 40976 - 41566 200 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257087704|ref|ZP_05582065.1| ## NR: gi|257087704|ref|ZP_05582065.1| predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis D6] # 1 196 1 196 196 287 99.0 3e-76 MYSILYLFTDSLKNAWRSKNQFSTLILIFIISFLTFSALLLTLLFSRWLSQMILLDNYAV IPPLTIFRGLAGISAGTLFFFLISYICRTFFLTFLEQKNDLLILALLGTTKLQILISYAL QPIYYLIFILPLAAFLANKLIQQFIHDFFSEVPGLMHIDSYMQGIFLPLTGSLLFICCCV FLILFRKLNRLIKRDT >gi|308151759|gb|GL476263.1| GENE 43 41687 - 42220 578 177 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 159 1 158 306 128 43.0 6e-30 MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTLIKPETPFFWRNTQIHGIHESDV VNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTVKTSRK LFPEFPNHKLNTVCENLNITLNNHHDALEDSRACAEILLQQEQRFGVEPLKKLVLVK >gi|308151759|gb|GL476263.1| GENE 44 42254 - 43009 826 251 aa, chain - ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 251 1 251 253 385 73.0 1e-107 MKCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYAEKK GYSGTAIFAKEEALSVRYGLGIETHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRM TWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDS GFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGS DHCPVEVVLDF >gi|308151759|gb|GL476263.1| GENE 45 43216 - 44130 951 304 aa, chain + ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 298 2 298 301 192 36.0 8e-49 MKIGVIGLGNIAQKAYLPTYSECRHLAEFVLATRNPETRQKIADQYGFTETVGTIEELIE AKIDACFVHVATKVHGAVVRQLLQAGIHVFVDKPLSEELAEVKELQALAAAKNLRLMVGF NRRFAPHTEVLKNIPEKQTIFIKKNRINTTRETSFMMYDLFLHVVDTAVYLAEGPLHVVQ SKLVEENGHLKRAILQLETEQTTIVCSMDLHSGANTETFEVTSPTGTYRLENLTHLTIQT EEEYQVKEMGDWTPTLEKRGFYQMVTAFIQAIQKPQEQELKQEKVYESHALCEEMLRQQQ RHVL >gi|308151759|gb|GL476263.1| GENE 46 44202 - 45104 1362 300 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 13 299 11 297 298 335 59.0 6e-92 MNTKAMLETLNEITLLVDEPLKNVTFTKTGGPADVLALPKTKKEVEEIVAYCREQGLSWL VLGNASNLIVRDGGIRDVVIMLTEMKEIKVAGTTMIVDAGAKLIDTTYEALAADLTGFEF ACGIPGSVGGAVYMNAGAYGGEIKDVFQSAEVLLADGTIQTMTKEDLNFRYRHSEIQELH CIVLQATFALEKGNHAEIKAQMDELTELRELKQPLEYPSCGSVFKRPVGHFTGKLIQDAG LQGLKWGGAQISEKHAGFIVNIDHATATDYVELIAHIQEVIKEKFDVELQTEVRIIGEEV >gi|308151759|gb|GL476263.1| GENE 47 45178 - 45816 652 212 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 254 61.0 1e-67 MLLKSVVIKKDNLTTVNESCTLEEALSILEDSGYRCVPILDESGKIFRGNIYKMHIYRHK ANGGDMSLPVTYLLKNATKFIYVNTSFFKVFFTIKELPYIAVLDENNYFYGILTHSTLLN ILAQSWNVKQGSYVLTIASVGQQGDLAAISKIIAKYSSIASCITLDVDSEEFVRRTLITL PAGTTAETCTAIVEHLERKNFKVVELENLEDE >gi|308151759|gb|GL476263.1| GENE 48 46029 - 46151 113 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MREPQTEQARAAFFVAMFFDLLYSQIYFLTVPLFEKVVKV >gi|308151759|gb|GL476263.1| GENE 49 46102 - 46254 267 50 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377208|ref|NP_816362.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 50 1 50 50 107 100 6e-22 MATKKAALACSVCGSRNYSKSVSEGKRGERLEINKFCKYCNQYTLHKETK >gi|308151759|gb|GL476263.1| GENE 50 46275 - 46445 324 56 aa, chain + ## HITS:1 COG:no KEGG:EF2730 NR:ns ## KEGG: EF2730 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: E.faecalis # Pathway: Protein export [PATH:efa03060]; Bacterial secretion system [PATH:efa03070] # 1 56 1 56 56 87 100.0 1e-16 MKFFRSVADEMKQVTWPTKKQLRKDTLVVIETSILFAALFFIMDTVIQTAFGWILK >gi|308151759|gb|GL476263.1| GENE 51 46570 - 47115 773 181 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 5 180 2 178 178 218 62.0 5e-57 METFERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIV HKTFPGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMST RQSDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI D >gi|308151759|gb|GL476263.1| GENE 52 47235 - 48113 944 292 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 29 292 36 298 300 184 37.0 2e-46 MKHAQKYRYFSLLMGLVLLLSACQIGASTKNDNQAATKEATVELNRTTTPTLFFHGYAGT KNSFGSLLHRLEKQGATTQELVLLVKPDGTVVKERGALSGKATNPSVQVLFEDNKNNEWN QTEWIKNTLLYLQKNYQVNKANIVGHSMGGVSGLRYLGTYGQDASLPKIEKFVSIGAPFN DFIDTSQQQTIETELENGPTEKSSRYLDYQEMINVVPEKLPILLIGGQLSATDLSDGTVS LSSALAVNALLRQRETQVTSQIIKGENAQHSQLHENPEVDQLLIEFLWPSKK >gi|308151759|gb|GL476263.1| GENE 53 48206 - 48928 371 240 aa, chain - ## HITS:1 COG:no KEGG:EF2727 NR:ns ## KEGG: EF2727 # Name: not_defined # Def: phosphosugar-binding transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 434 99.0 1e-120 MNLDYLKETYHLTKTESQILYYLDQQSTNAADLSIREVAKHCFSSPSSIIRLAKKLNLSG YNELIYKLKEAHFSQPIPFETAPSFETTNEFCQLLAKHKSHLFVILGHDFSRHLAAYISE VFNFHGIPSITTAYTHSINSQNNQNFLFIILSHSGEEKYLKETALLAKEKKHPIISFVGA KNSTLGRLADLVFSTDSYSPFSTSVAQPQMFFGQTLITFEALICAYLNHEDSIPISPKNK >gi|308151759|gb|GL476263.1| GENE 54 49006 - 50634 1577 542 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 533 41 550 559 365 39.0 1e-101 MKRATKQRLSLAAIMVLLLSGCGSVGKETKKQEQQVLRVGIDSELSTADVSLAMDNTAAD VMSQVGEGLFSFDEKGEAKPALATEKVQPSNDGLSYTFTIRKDAKWSNGEPITANDFEYS WKRTVDPKTASPQAYYFEGLKNYRAIVDGGKSKEELGVTAIDDHTLEVELSYPMSYFQQL LAVPAFYPLNEAFVEKTGKNYGTSAESTLYNGAFTLEGWDGTNNTWSYVKNKNYWDQANV SLDKVDVQVVKEVNTGKNLFEGKELDVVKISGEIVAQEQDNAALKIREIPGTYYIQLNTQ KDLLANKNARRAIALSLNSERLAKNVLNDGSKKALGFVPTGFTNQETQKDFAEELGDLNP SEPEKAKELWQTAKKELGIEKAELTILSSDTENAKKISEYVQGALADNLENLTVNVSPVP FNNRLEKSRSGDFDIVVGGWTPVYADPIDFLNLLQSKNSNNFGKWSNKTFDQLLQEANVT YANKYEERWKTLQKADQLVAEEAPLVPLYQLTEARLVADSVQNLVYGPLGSGYYKSVSIS DK >gi|308151759|gb|GL476263.1| GENE 55 50648 - 51751 1068 367 aa, chain + ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 5 357 6 358 361 217 34.0 3e-56 MKKSQAVQLIQELSNANGVSGFETEVVRILQHATADFTIQRLDAIKNLYLEKKNNLSEGP VVLFDAHSDEVGFMIQAIKENGLLRFLPLGGWVPNTISAQKVRIRNREGNYLPGVVTSRP PHFMTPEERQRPLTIADLTIDIGATSKEEVIETYKIDLGAPVIPDVTCCYNEQTDLFLGK AFDCRIGCACLVDVMEELKEETLPFKLVATVTAQEEVGERGALIAAKQVNPDLAIVFEGC PADDTAETPEMIQSAMGKGPMLRYFDVSMITNPEFQEYALEIAKINKIPVQVSVRSGGGT NGMAITQVQGAPTIVVGIPVRYAHTPHCYVDFQDYQAAKELVIQLIKNLDADKIQALVQP LSKEWNK >gi|308151759|gb|GL476263.1| GENE 56 51748 - 52593 988 281 aa, chain + ## HITS:1 COG:PH1582 KEGG:ns NR:ns ## COG: PH1582 COG2362 # Protein_GI_number: 14591360 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus horikoshii # 1 281 1 274 278 124 29.0 2e-28 MKIYVSCDIEGLAGIATFDMEKEDTVLFRELYHQHVAWLIEGIQKSAKNEQITEITIADS HSRGLNLAYARLAEMDERISLVSGFPRMDYMMSGLDSSYDVVFFLGYHAGIGKQKGNMDH GYSASVAYDLKINDLAMNETTINAAYASELGVPVGLIIGESGLEEQLFQEKMMPEVPFVS TKESLGRYAIKNRPMQQVREAFVATTSQVLTSFALSELPKYTLQTPATVKLQCVTTAQAD RIEMLPMIKRIDGRTVSFVGETMKDVMNGIVAVVGLGGTSY >gi|308151759|gb|GL476263.1| GENE 57 52658 - 53530 1209 290 aa, chain - ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 286 1 286 287 331 65.0 1e-90 MFYSIEDLVAQAKDYPSVSELMIATEMAHGGYSRERIIETMEKNLAVMKQSVAEGIAGVT SVTGLTGGDATRLNDYIHSGNFLSGETILQAVRNAIAVNEVNAKMGLICATPTAGSAGVV SGVLLAVIDRLKLTHQQQLDFLFTAGAFGLVIANNASISGAEGGCQAEVGSASAMASAAL VAASGGTPDQSAQAVAITIKNMMGLICDPVAGLVEVPCVKRNALGSSQAFISADMALAGI RSVIPPDEVIHAMYQVGRQMPQIFKETAEGGLAVTPTAQRLSKEILEKQK >gi|308151759|gb|GL476263.1| GENE 58 53553 - 54221 696 222 aa, chain - ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 222 1 223 223 291 61.0 8e-79 MEELRFNSVFDIIGPVMIGPSSSHTAGAARIGKVVRSIFGQQPDSVDIYLYESFAKTYRG HGTDIALVGGLLGMEPDDEQLANSLEIAYEQGMEVCFIPKSEKADHPNSVKIVVSSGDRK LSVTGISIGGGNIQISELNGFKLSLSMGTPTFIVVHQDVPGMIAKVTNILSASDINISTM TVTRESKGEKAIMIIEVDQAEVGDIVMQLAEIPHIYSVNYFD >gi|308151759|gb|GL476263.1| GENE 59 54597 - 56093 1542 498 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 497 1 511 513 479 50.0 1e-135 MSKIELKQLSFAYDNQKVLLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGE ILHQVDFVYFPQTVAEEQQLTYYVLQEVTSFEQWELERELTLLNVDPEVLWRPFSSLSGG EKTKVLLGLLFIEENAFPLIDEPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVV DHILAIEKSQLTLYQGDFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNR EGDKYGNAKEKGSGAIFDTGAIGARAARVMKRSKHIQQRAETQLAEKEKLLKDLEYIDSL SMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLG DFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYTQFLNNLRKLGMERAVF TNRIEQMSMGQRKKVEVAKSLSQSAELYIWDEPLNYLDVFNHQQLEALILSVKPAMLVIE HDAHFMKKITDKKIVLKS >gi|308151759|gb|GL476263.1| GENE 60 56216 - 56638 679 140 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377197|ref|NP_816351.1| ribosomal protein L11 [Enterococcus faecalis V583] # 1 140 1 140 140 266 99 1e-69 MAKKVEKIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGLIIPVVISV YEDRSFTFITKTPPAAVLLKKAAKIEKGSGEPNKTKVATVSSDQVKEIAELKMADLNAAD VEAAMRMVAGTARSMGIIVE >gi|308151759|gb|GL476263.1| GENE 61 56750 - 57439 1156 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 [Enterococcus faecalis V583] # 1 229 1 229 229 449 100 1e-125 MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIR GAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDM MATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSF DNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF >gi|308151759|gb|GL476263.1| GENE 62 57762 - 58262 780 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519497|ref|ZP_03949546.1| 50S ribosomal protein L10 [Enterococcus faecalis TX0104] # 1 166 1 166 166 305 99 2e-81 MSEAAIAKKESLVQAAAEKFESAASVVIVDYRGLTVEEVTNLRKQLREAGVEMKVIKNSI LSRAAKKVGLDGLDEVFTGPTAVAFSNDDVVAPAKIIDEFAKDAKALEIKGGVIEGKVSS VEQITALAKLPNREGLLSMLLSVLQAPVRNVAYAVKAVAEKNEEVA >gi|308151759|gb|GL476263.1| GENE 63 58325 - 58693 571 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 [Enterococcus faecalis V583] # 1 122 1 122 122 224 100 3e-57 MALNIENIVAELETATILELSELVKAIEEKFDVSAAAPVAVAGPAAGGAAEEQTEFTVEL TAAGDQKVKVIKAVREATGLGLKEAKAVVDGAPAPVKEAVSKEEAEALKAALEEVGASVT VK >gi|308151759|gb|GL476263.1| GENE 64 58944 - 59816 579 290 aa, chain - ## HITS:1 COG:no KEGG:EF2713 NR:ns ## KEGG: EF2713 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 36 290 1 255 255 384 99.0 1e-105 MIKMKKMFLGLFCFVSITTLSVSNVWAEDSANEASVEKSTVTSLTQETSATTINASTDST ALTAESEELPSLRQTLLNYVGMYGLTETLINRLSDDELDYAKKVSFHFVNQDISGTARMI TKLYGEKPIPEDSYSTDYSTLTIDDLKNYLPQIRLSLIYVYDLNSDVVNNLSDQTLVDLI NQVKVDYANQNYPSDVRGDYGLAAMADKIKANDYTSINQSAESVSSDTTNTESTLQTTTS SSKKTTTSSSTEHKKGIFPSTGEKKSVLFTIIGIILLSLVSIFIIKNKKK >gi|308151759|gb|GL476263.1| GENE 65 60136 - 60966 619 276 aa, chain - ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 6 275 2 279 287 98 28.0 1e-20 MQNVFTNNVSILINDQPISQEFHLYEAGYEKCRPTKPTEFAPINYWVLHYCSDGEGYFST PFMEKQHITAGDLFMIPANCRNIYYPNRQNPWTYHWVGFVGDLSSQYLEKIGLTTENCIL KGTVDKKLESLFKNIYQEAKKHNHFGSLSESFQLLNYLEHHSVTQHENQSQQLFNQIKMA IHENFSNNLSISQLASEYNIDRSYLFKLFQRYEQTNPSIYVQNLKLQKACSLLRKSSLTI TEISFEAGFSSPSYFSKFFFQKKEMTPRQYRQQFLT >gi|308151759|gb|GL476263.1| GENE 66 61115 - 62614 1559 499 aa, chain + ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 478 1 457 477 337 41.0 3e-92 MATHSRERLGSVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYLFGSIFYFLPFILMIAE FASANSENESGVHSWLESVLGPKWAFLGAWSYFFVNLFFFCSLLPNTLIYGSYAFLGQNV FQGNHSTKIIAVISILLFWLMTWVCIKGVSWISKVTSLAGGARLFMGVAFVVLAFVVVFG FGNEPAQEFTTTSIMPTFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVRTMIGA TIAVGIMYILGAVAVGLVVPTDVLKGNFSNGIFDIFKILGTYFHIPAVMMVRLVGIILFV GSLGSLALWTAAPVKVFFSEIPDGVFGKWLVKTNEEGNPTNALLVQGIIVTILVAIPALG IGNMDSFLETLINMTASTSLVPVLFLLIAYIGLRWKKETMPRSFRFGNRTFGLIAGIFLL AIFIFVFFMSTVPDPKLIMEEINGTLPKGTASPLGMLAYNIIGLIVFMGFAWICWKRYET KEKNEVGKGEMDYEDLGKL >gi|308151759|gb|GL476263.1| GENE 67 62592 - 65669 3350 1025 aa, chain + ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 1015 13 1023 1042 736 38.0 0 MKTWENYKVDSINRLPGRAHFSSFPSKETALLNENKYTQAYKNLNGRWHFLFLEAPEYSP ENFFATDFDTSQMDQITVPGNWQVQGYGKMHYSDLWYNFPINPPYVPTENPTGIYKRTFA IDETFHDKKIILRFCGVDSAYHVWVNGHEVGYSKGARNEAEFDITPYAKIGETNDLTVRV YQWSDGTYLEDQDMWWLSGIFRDVELLGVPENGLEDFFIISDLDDSYQNGHLAITGKFWQ DKGQQVQLELMDQQGKTVLKETVAGNQGKVEFSASLPSVTAWSAEKPYLYQLFITVFSEG EVVEVIPQKVGFRNIHVSGETFLVNGVAIKLKGMNRHDYNPKNGRVVSREEIEKDIRLMK QFNINAIRTSHYPASAYFYDLCDEYGMYVIDETDLECHGFELTGEYDWISNDPEWETAYV SRMVRMIQRDKNHPSILFWSLGNESAFGHNFIEMARIAKEMDPTRLVHYEGDFEAEVTDV YSTMYTWLEHPTRELLMNTIIENSKKPHILCEYCHAMGNGPGNLKEYQELFYAHDKLQGG FIWEWFDHGIESVTDNGEVYYRYGGDFGDDPSNKDFCIDGMLMPDRTPSPSLYEYKKVIE PITTSAIDVLSGEFSLLSRFDFENLAIFKLVYTITEDQTVIQSGTVAVPAIAARAEGRLH LPYHLDFPKKAGAAYYLTLSYQLKETTAYASAGHELATAQFELPIATPGIEITPVGSLMA KEIGPHLYIEGPNFSINFDKVKGALTNVTRDGKKLLHKGPKFTFWRAPISNDMEIIDEMK KKYFLHLEHEIVRSFEWKKVDDFIQVIVKTINGTTNSAWHYQCTYQYLIAPNGEIFFDLK GSPAGKIENAPDMLPRLGVTLHLDKSLSEVKYFGKGPRENYVDSQEAGLLGVYDAIVAEM FTNYVVPQANGNHMATKWSAFTDDRGQGVVATAADSYNFSVSYFEEQALDVAKHTNELQE SEYVVLNIDYKQNALGSYSCGQWQLEKYRTTFEEFQLAFRLTPFNNKEIQAADVAHERVK RPTIS >gi|308151759|gb|GL476263.1| GENE 68 65850 - 66098 410 82 aa, chain + ## HITS:1 COG:L144047 KEGG:ns NR:ns ## COG: L144047 COG2261 # Protein_GI_number: 15673874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 82 2 80 80 77 73.0 7e-15 MHTLWVLIVGAVIGAIAGALTSKGQSMGWIANIVAGLVGSFIGEKILGSWGPHVAGMAIV PSIIGAVILVAVVSFFFGRKNS >gi|308151759|gb|GL476263.1| GENE 69 66170 - 67540 1537 456 aa, chain - ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 456 1 457 457 525 56.0 1e-149 MTQQLVKKGQQISLKIKRLGINGEGIGYYKKLIIFVPGALPKEEVTATITNVTPKFAEGT LQSVKKAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYEL RKTIGMENPWNYRNKAQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLV DLLNDFQLPIYDERKNSGIFRTLMVRVGIQTGEVQVVFITQSQKFPQKEKMVRAINEQLP EVVSIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYN EGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNT HYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLA RDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK >gi|308151759|gb|GL476263.1| GENE 70 67672 - 68472 853 266 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 263 264 132 34.0 6e-31 MTTITRISKDKGEFYLLWLSSGEKLRVSEDILVRQRLLKGQELSDTLIEEIKKASSYDVG LQMAMNYLSYQLRSKKEIFTYLKEKEIVPEDRVKIVQRLEELRLLDDAIFSESYVRTAMR TSDKGPRNVAQQLKQKGISEEDIQHGLTFYTLDEQLNVATATAEKAMKRYRTKSFKDALQ KTRLHLMQKGFTNEIIDLALESLAFEKDEEQEQQALNKEGERLWRANQRFDFSKKVQKVK QSLFQKGFDYDLIQQFISEKEVEHDE >gi|308151759|gb|GL476263.1| GENE 71 68462 - 69646 1219 394 aa, chain + ## HITS:1 COG:SP1228 KEGG:ns NR:ns ## COG: SP1228 COG1194 # Protein_GI_number: 15901090 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Streptococcus pneumoniae TIGR4 # 10 389 2 373 381 361 48.0 2e-99 MTNKEPWEAWSPAKVSSFQEDFLAWYEREKRNLPWRANTDAYRIWISEIMLQQTRVDTVI DYFYRFMEWFPTIQDLAEAPDDKLLKAWEGLGYYSRARNLKVAAQQIVSEFGGKMPGTIE DIRSLKGIGPYTAGAIGSIAFNLPEPAIDGNVMRVVSRLFEIDADIAKASSRKVFEAAML KIIDRERPGDFNQALMDLGSAVCTPTSPKCESCPLQQYCAAYQADKMTAYPVKSKKVKPK DVYYVGTIIENKKQEFLLEQRPETGLLANMWLFPIEEISKKQFQQLQKLAQPAETEKQLT LELEPVTEPLVAEEPVNFFTDYETVVWQKRALGEVVHIFSHLKWHILVFYGRNTGELATL ESQRWVAAQQFSDYVFPKPQQKMVELFKKEHKNK >gi|308151759|gb|GL476263.1| GENE 72 69827 - 70951 1131 374 aa, chain + ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 3 309 17 333 349 156 33.0 8e-38 MSRKRKISLISLVIILVFVTVGSAYFAVAGSYLKKTIDKGYVPIKNDYNEAQNKDSQSFL IMGLDNTIERKLGTTRTDAMMVITVNNKTKKITYLSLPRDSFVQIDAKNYQGMQRIEAAY TYDGPTASVNTVEKLLNIPINHYVVFNFLSFIKLIDAVGGIDVNVKQAFDGVTKDGPGSI HFDAGKQHLDGTKALSYARERHSDNDIMRGFRQQEIIQAVEDKLKSGQSIMKIMDIIDSL NGNIQTDVDSNELTHLVKEGLTWTNYDKQQLSFDWRTFSNEGRSMVELYPDSIENVRHQL RVSLNLEKPDERDQDGYVFHTNGEFLYQSDYTVQDEAAEENEMTSINGNTYIGVPGNTQT GPLPSVKTENGFIK >gi|308151759|gb|GL476263.1| GENE 73 71143 - 71574 528 143 aa, chain + ## HITS:1 COG:no KEGG:EF2702 NR:ns ## KEGG: EF2702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 272 100.0 3e-72 MFSYTDTILSIMQRIEVYNEIFKAISKEVQEYGCNQAAHRRGRDTYMFCRNNVNRFFTEE MMFRKNLEPYYDKEATKILLEGLDTYKEGVFFWLEALSESCQVTDELKYQLGIRQKESSY LLINQACKEACEGIQSAHSVHKM >gi|308151759|gb|GL476263.1| GENE 74 71737 - 73257 427 506 aa, chain + ## HITS:1 COG:VC0422 KEGG:ns NR:ns ## COG: VC0422 COG0312 # Protein_GI_number: 15640449 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Vibrio cholerae # 163 361 258 472 481 70 28.0 1e-11 MYQYFHSLNIEVNKTVCNSKISSFFIKKDHLGNTDYECHDEDFNNNYFYLKFLDLKKNLK EIKSILETFETDIRLFIFRKREVIKINEITDIRWTEYFRMVFLHNETSTYEDYDISLLLN LESFIELIQRKEQEFIKLIKLPILKENIDINLYDWLFMPAIGGYFIHETVGHLLEMDNKG TYRLDQVVAGKFLDVIDTFYDYENLIGLNKYDDNGIRLEAIKLITKGTIKNFLGDRGSLR KENFSFVSLPRMRATVVENSDFFNESDLSRLKKNNDHLKIQQIYGGGVDVGSGHYQLLVR GIVVIKNKDMYRIENLILEGKSTESLKRIIYVGKDKNCKHAYCYKKNQMVDVVVGSPTLY LKNGEKMKKLKKILEELKITKDYAYCTLTSIKEYNEFNKTIDGPKVLYIATLKGENLEYI YMYYHDCLSIKYILDNFKNFKIKEKNHHTLKQLPIKNYYCFSNSVNKDSWKIDFFDSNNN NYCCIREETRNFFIIREIKKIRSKKT >gi|308151759|gb|GL476263.1| GENE 75 73870 - 74394 669 174 aa, chain - ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 173 2 167 169 124 38.0 1e-28 MTVYLRKAEPSDLPDILAIIEDGRRTLQKSGIPQWQNGDGPNQEILAKDIDQQTCYILMV EDALAGVGVLCSEIDPAYEAIFNSSWQPHSQTTYTAIHRVALKSSFQGQGLALVLLRSLV TAARLQGATDIRIDTHPQNFAMQHLIKKAGFVYQGDVILDVNDGERYAYQMILK >gi|308151759|gb|GL476263.1| GENE 76 74411 - 75232 852 273 aa, chain - ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 34 265 25 294 307 125 33.0 1e-28 MPQFASKAEEKNYFERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLL IQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPR GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD TLAFDHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSNF KKAMTQYFEELGERPVGIGRPSKIYQLKTTTSF >gi|308151759|gb|GL476263.1| GENE 77 75395 - 76582 1608 395 aa, chain - ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 1 393 1 398 399 377 62.0 1e-104 MTEQQPKETTSVTNTLDDLLSNPFSSMDELTPTQQNELSELKEQQAAPRLIDKLPQERQA QAKELASKIDVQDSQAVITYGSNAQIKLGEFSQAMLNHVQAQDIGPVGDSLTDLMFRLNE ANPNELRAGEGNFIQKMLGKVKQSVYEITAKYQKIGAQIDKIAVKLTHEKDGLLKDNAML DQLYQKNKDYFDALNIYIAAGELKAEELRTQIIPEAMKKAEESGDQMDVQIVNDYNQFLD RLEKRTHDLRLARQITIQQAPQIRLIQNTNQALAEKIQSSVNTAIPLWKNQVVIALTLLR QKDAVTAQRQVSETTNDLLKKNSEMLKISAIETAKENERGLVDIETLQKTQNDLIETIQE TLRIQQEGKEKRQAAEIELGHMEEDLKNKLLELTQ >gi|308151759|gb|GL476263.1| GENE 78 76602 - 77282 805 226 aa, chain - ## HITS:1 COG:lin2080 KEGG:ns NR:ns ## COG: lin2080 COG4915 # Protein_GI_number: 16801146 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Listeria innocua # 71 226 62 217 219 88 28.0 1e-17 MNKLNTKLLIGYILLGALIIAVAREYGFFAFVILVGFLVFVLYRKKKNAADKSDQMPYLT KDKEAHYRELGLSPQEIDFFRSTMSTAKKQIIQLQENMNRSTKLRAIDLRNDTTKVSKAL FKELVKEPKKLHLANHFLYTHLPNIVDLTSKHLEIEQHEVKNKQTYEKLEESAQIIDQLS KLVKNDYEEIVSDDLDDLDVEMSIAKSSLSQKAATEESPQVNEDQQ >gi|308151759|gb|GL476263.1| GENE 79 77667 - 78251 568 194 aa, chain + ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 5 185 2 180 185 181 54.0 5e-46 MLNYEDFEEKTLQRREIFKGKIIDVFLDDVALPTGGTAKRELVFHSGAVAMIPLTAEGKI VLVKQFRKPLEQVILEIPAGKIDPGEENQLETTAMRELEEETGYRAGQLTYINSMYLSPG FANEKLALYLATDLQKVENPRPQDEDEILELYELTIAEAKAEVAKGTICDAKTLFAIQYW ELYLLQRQFKEDTQ >gi|308151759|gb|GL476263.1| GENE 80 78248 - 78544 420 98 aa, chain + ## HITS:1 COG:no KEGG:EF2695 NR:ns ## KEGG: EF2695 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 103 100.0 2e-21 MSKGPLVTRTELRKRREAEEKEAERRQQEEQKLAEKAYKRKEKEISTFYRKEKKKQKPIN KSRVGEYSKRRERSTWLNKAIIIVAILLAVVAYIVLNL >gi|308151759|gb|GL476263.1| GENE 81 78560 - 79255 1011 231 aa, chain + ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 3 231 36 259 259 217 53.0 1e-56 MKIGIIGAMDQEVKILKEKLTDTMSWERAGALFVSGSLGRHEVIVVRSGIGKVASAVTTT LLIHQYGVNMVINTGSAGGIGEGLKVGDLVIADKLAYFDVDVTGFGYAYGQLPGGVPLYF ETSEYLRMEIAKAAEKTGLAIRKGLIVTGDTFVDSAEKIAKIKKEFPEALACEMEGAAIG QAASQFNIPFLVVRAMSDTADGEATQSFDEFIDEAGKKSAEMVIHFVENLV >gi|308151759|gb|GL476263.1| GENE 82 79322 - 79588 295 88 aa, chain - ## HITS:1 COG:lin0209 KEGG:ns NR:ns ## COG: lin0209 COG2827 # Protein_GI_number: 16799286 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Listeria innocua # 1 84 1 82 90 83 64.0 1e-16 MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVKMIHTEKFE TRSAATKAEAAFKKLTRKQKEQYLKTFH >gi|308151759|gb|GL476263.1| GENE 83 79578 - 80312 886 244 aa, chain - ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 243 5 247 258 280 55.0 1e-75 MLLSGERIDQLYADDIKIIQSKEVFSFSIDAVLLANFPQLPKKGKIVDLCAGNGAVGLFV SRKTAAKIDQIELQPRLADMGQRSILLNKLEKQVTMYERDLKQATEVIKKDSVDLVLCNP PYFKERPTSQKNPNPHLAIARHEIHTSLQEVVTVSADLLKTNGRLAMVHRPDRFLDILHA MENANIAPKKARFVYPKPGKEANVLLIEGIKQGKKDGFRVLPPLFTYNEKNEYEAEMKAM LYGE >gi|308151759|gb|GL476263.1| GENE 84 80501 - 81127 820 208 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 195 1 196 249 244 57.0 8e-65 MFFTFMRGVVRVILFVINGNAHYENKEKLPKDQNYVLVAPHRTWWEPLYLAVAGSPKKFS FMAKKELFKNPVLRFILKHANAFPVDREKPGPSAIKTPVKILKNSDLSLIMFPSGTRHSS ELKGGVALIAKMGRVPIVPSVYQGPLTLKELFKRKKVTVRFGEPIDISDIKKMDKDGLAE VERRMQEAFDQLDKEIDPTFKYESTEKE >gi|308151759|gb|GL476263.1| GENE 85 81311 - 82447 1012 378 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 378 1 390 390 265 41.0 1e-70 MKFLHTADWHIGKKLHGFDLLAEQKEAFKQILAIAKEEQVDAVVIAGDLYDRSVPAVEAV EIFNEMMIQMNLKEHFPVLAISGNHDSSTRLETGGPWFNQTQFHLNTRLEQAFQPIEIDN TQFYLLPYFEPIAARLYFEDETIRTIQAAMEKVVAKMQESFLPNKKQVLVSHFFVAGSEK TDSETKLTVGGLDVVPTALLEPFDYVALGHLHGKNALQAPNARYSGSPVKFSLSEMTQEK GVWLVETEDEVHFQFRALKPLRDIQQLTGSFQQLTDPAFYQEVNRENYLHVQLTDRAIIP NMMNQLRKIYPKIIGLERLNGRETSSGNQKKVVQIEQRSPEEHLHDFFNDVTGEALTEQQ AQWVQEELSTLNQLERGK >gi|308151759|gb|GL476263.1| GENE 86 82452 - 85589 3707 1045 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1040 1 1041 1046 311 29.0 5e-84 MKPLSLTLKNFGPYINETIDFTKFEDSSLFLISGKTGAGKTTIFDGMSYALFGESSGKLR LGKEMRSTFADPSEATEVTLLFKHNEFLYELNRLPEQELFKKRGTGVRKQSAKISLIVKD AQGKELRAYSKRREVDELIQELLHLNANQFAQIVLLPQGEFRTFLIAKSDEKEKVLRNLF GTELYQLFSENLKERLKIANQEIQETQQKIELKTEQLHWSEEPEPTMTLFEKLQLLESQQ QETQQQLLVEREQIATLKQAKQAKEQVRYAIEERQNLQQQKEELLEKKAKQAEQETVIER LKEQIQQLKWSQKQQPLAEKVFEKRSEKQQKEQETKSKQQALMETQQALTDWQAIMSELE EQQPLIAEKQERLQTIQRQLPQYQEYEQLAQQQIAEQANYQAIQKEYESCQQEKITLADK VATAKQFIEQEGTLEKANFECSSVADHWQNFVERWQKNQKAWQKISQNQVELHELTQRFA VEQQQKSAEEAKLQTKKSQWASLQIQRLSLLLEEGEPCPVCGSLEHPKQQTHQEVSLEEI DQAERELTEVEKTVQRFTETLSALGAEKQQKESQLQEQEAAYTEEQEQLAAQFADLQLPL TGLTFSQVTPAEIAEVESQLAKEKQQIAQKLTEISVEKDRLAELEEQVAENSQRVEVLRQ QVETMQQSLERITIQQQMIASQLLDATVTYEEMTKQQALLQEELSAFERQKENVTTQGET LKKEEMILESTLTHLEKEQQTLQQTVAQLESQLNAVLTEQGVTEDQLTEWLKEVPTLESQ QEQIALFEQEQTQLTIQLAEIEKKLSSDTFPELSLITTEIEQITQQIEEQEKKYYQLHEK MLNNQQLVQEINAQRTTIEDKFEEVAALQQLADTVNGNNPKKISFERYMLQTYLERVLAV ANQRLDRLTNSRYQFELNHEAGSYRNQTGLEINIYDDNSGTVRSAHTLSGGESFIAALAL ALSLAEVIQEQAGGVLIDALFIDEGFGSLDEEALEMAMEALETIENEGRMIGIISHIGEL KARIPQQLQIKSNGNGQSTVHYQLA >gi|308151759|gb|GL476263.1| GENE 87 85609 - 88806 3391 1065 aa, chain + ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 5 1063 12 1065 1072 637 35.0 0 MKWSIPERIVEQGREYMQEGRVLSIVQNPEKRIWLSEVLGEELYLVELDGTAKEQDVCEC QYWMEHGYCKHTVAVELALKQRGVSRIIQANQTVSFEKTNRSTAEMFTKGFAKLSKASAE VPLQPLRLEFHLDVIETNNYYPELSTIGLSLKIGLEGTKPKTYIVKNIGDFLQAYEKEMT FMVNKQHQFTLLHDSFSMEIQEILTELAAIYHTSQLLGANGIQVKGKIDKRYLLLPIDRS QSLVEKMNRTGQFILTNQTHKYRYLTFKETSLPLTFTVQKTEEQSFKLTIQNPITTFLAH YHWAIADQTVYLLTEEQEAIYTTLLQLMKRLEEPSIIYEKETVSDLFSEVLPLLEKIGRV SVEESVEELVVHHPLKAVFIFKKIKGRINARIDYHYGEVIFSTNPKYAQLPEVNQEIVRD KAKETAIKQQFQQFAYQQTTTGFEKVLPAGESLYYFFKAEVPAFRQLGEVRMGRKLRELY LDAQHHQPTIEVAEGDSWLDIRFDVTGIDETEIDAVLTSLLRNDAFYTLKSGEILAFDSE EFFHTSAILTKLRKNMHQEDNVIHVPKNQGLMIESLLEDNERAHFSDSFKKMVTDLTHPE NFEAQVPKTLQATLRHYQKTGYKWLKMLSHYQFGGILADEMGLGKTLQTITYLLSEKEEE RLKGTALIVAPASLTYNWLAEVKRFAPTLNVQVVSGNRQERAALLQNSTEDILITSYASM RQDVQLYQEMRVGYLILDEAQMVKNSGTKTAQALKSLKVPQRFALSGTPIENNLDELWSI FQMILPGLFPGKKAFREIKPEEIAKMIQPFILRRDKKTVLADLPEKIENNMYSVLTEEQK TVYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYTGGSGKVEQV KDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEG EKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRAHRMGQKKVVEVWRMIAE GTVEEKMNSLQQEKRELFQKVIQGNEEQLAKMTEEDIRTILSIGE >gi|308151759|gb|GL476263.1| GENE 88 88856 - 89227 513 123 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 307 221 99.0 1e-56 MKQKEYMEYRPLGEEIERIRKGKNIPLRVFDENGVSSRSYQRFVQGNSELRISDLAIIVE ILSISPMEMTEKLTPMSKTVLAKEQFNQAIFSKNFQESSRIVADYRAYYDKSSFALGKQE VMY >gi|308151759|gb|GL476263.1| GENE 89 89228 - 89782 515 184 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 177 125 301 307 308 100.0 9e-83 MLALEYLFNPQTVVTKEEIIALENQILERLINADVYTIFNLKFLALQKNVGLQPFPTSLL FRVLQSVNEREIIDIRSLEIIEQVIIDFLFAAIVSQNVPHILHVLSMFKEYEVGENNWRM ILWKKIAEKIEMILTNEEIFADWSIFKEQILLSITLFLPKAKQEFFAGQLEKIEDSLFND FLGI >gi|308151759|gb|GL476263.1| GENE 90 89944 - 92115 2066 723 aa, chain + ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 110 473 39 384 656 162 32.0 2e-39 MKKMCISAVSALLLGNSLLLPVTTFAETTETIASSSEENVSSVSEEKIPETSSAEEQNSA TSSSEIPQSEELTTVETSEEPPNEALAITEAQLMMPQLYAGAVLDKATPISTLFPDPAFA ENIRKQLSKSRTSNTVTQAELDKLNKVILENVVVSNVEGVQYLRNLEELSFQDSLNITDL SPFAKGEFKLLRFLYMRNNKIADLSPLGQAGLISLEGLYVENNQLTTLNGLEGMAALKNL SIQNTTDHPSKITPNNRVTSFDPLRSLRNLETIWAANNQIATLDGLTEANNLLRLYVENN QLKTIAPLANKPRLEELSIMNQTIASLEALSTVPNLRVLYARNNQISSLAPLEKTLNLTV LDVGENQISDISPLKGLTAITGLDVSNQMIILSSVNYIAGKPLQLKNKVVSRDGQLFPPL TISPYGSYDATKGLFEWNLPKAHEGVSYIWESTDKAYLGNFSGTVVQPVKEVFLSETKLS WSKERIEKSMEKTIDIDDFQKTALPFYWQDVDAGNRLQFIVKKEGQEIQKLADETTTNSK TFKEKALLLPELTYGKQQLVVEVYDKGYKIDELALTVTVVGSVRFKTVPTAISFGNELQI ASSTTQYPIVSMDQPLVIRDTRQTGNNWSLALTVTSDFKSESGATLPNILKFRTNHRLQD IPEGQSILVHNQVNGHQETNISDQWKENDQELLLSVPGGTAKAEEYEAKLTWHLMDVPDG SAK >gi|308151759|gb|GL476263.1| GENE 91 92152 - 92487 193 111 aa, chain + ## HITS:1 COG:no KEGG:EF2685 NR:ns ## KEGG: EF2685 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 111 12 122 122 203 99.0 2e-51 MLLGLISSVDVFAETNAYPTNAEVSFYGEYEPPANKEKPDGKIPQRFPKQSEAIPAVSGE SLKHSTSKTVDQKGSGFLPRTGTKQQQMFNYLGIIVIFMASFILKKRKKEQ >gi|308151759|gb|GL476263.1| GENE 92 92489 - 93271 982 260 aa, chain + ## HITS:1 COG:no KEGG:EF2684 NR:ns ## KEGG: EF2684 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 260 1 260 260 437 99.0 1e-121 MKKIILSTIPAITLGVAIAPEVNAEEKNYESNAIVEFTPDTSINKPVDPVNPDTEKPVEP FDPTTPDTGNKPNEGTTGPLSIDYASSLDFGKNKISNKDEKYYANPQYFFLADGSGPDLT NPKPNYVQISDKRGTNAGWALTVKQETQLTATKETLNKVLDGSEIKLSQNKAVSNSKAVT PTAHEVTLVAGDSSNVMSAAEGQGSGTWLSAFGGIEKVEVDGESVDKNTAITLTVPGATP KDAVQYKTVLTWTIADLPSV >gi|308151759|gb|GL476263.1| GENE 93 93311 - 94087 1032 258 aa, chain + ## HITS:1 COG:no KEGG:EF2683 NR:ns ## KEGG: EF2683 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 258 258 443 99.0 1e-123 MKKMTIASSLILATIAVGTLPVQAEEVANRDTDAIVKFKAPDEKDPNSKNPVVDPEDKDG KDPVTPIDPVNPDKPVDEGSTGPLTLDYASSLNFGENIISTKDETYFASAQVLKDKNNVE KTGPLFAQITDNRGTLEGWTLSAKQNSAFTSATKGQTLEGTEIVFQNASAVTAGQSAAPT SLASVTFGTVGESHNVMVAATDQGAGKWSYLYGNASSIAEVDGRQVMKDVQLKVPGKSVK LNDAYKTTITWTLANTPV >gi|308151759|gb|GL476263.1| GENE 94 94162 - 95187 1088 341 aa, chain + ## HITS:1 COG:no KEGG:EF2682 NR:ns ## KEGG: EF2682 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 312 1 312 341 531 99.0 1e-149 MKNRYFILMILSFYFFAFGIETSAAELRFSVETEIPENQIDKTKTYFDLMMKPDQEQILK VRAANSTDENLVIDVSVKSATTNSNGVIEYGESLTALDKSAPADLSEIIQLKDGGESVEL PAKSEKVVELRVKMPKEEFSGQLAGGITFSEKVDETKDKQKENTNGLAIENRYAYTVAVL LRENETVVQPELSLEKVEPTQRNARSVISATLLNHEAAYLQSMKVTANVKNKKTNNVILE KEQEDMQMAPNSIFNFPIPYEENEMEAGTYVLAMTVEGSGKKWQFTKEFTISKEEAKTFN EKDVTVKKTESKLIYLLIGLLLLLLIICLFIILRLKKQKNK >gi|308151759|gb|GL476263.1| GENE 95 95225 - 95938 633 237 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 4 237 5 238 300 273 55.0 2e-73 MRTIVFDVDDTLYDQQQPFRNAMTKIFPNVATEDMHELYLRFRHHSDETFPKVLANEWSL DFMRFFRMNETLKDLNYPGISQEEGKIFQQVYEEELDNITMHPEVTKLLDTLQEKEIPMG IITNGPTDHQFKKVKQLNLEKWVPSQNIIISQSTGFQKPEKEIFDLACNQFCMEPEHTLY VGDSYDNDIVGARNGGWHSLWFNHRSRELPSCQPASHLAEVTCFTELCPTVEKLFNL >gi|308151759|gb|GL476263.1| GENE 96 96114 - 96200 79 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKYSDNEKFVKMILSQSYLNNTCSDRS >gi|308151759|gb|GL476263.1| GENE 97 96266 - 97981 244 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 346 555 14 227 245 98 32 3e-19 MLKRFFGYYRPYRRLFILDFGCAVFAGLLELAFPVAVNQVIDKIMPKGDFRLIALASAGL FAFYIINTFLQFIVVYFGHMLGVNIETDMREELYQHLQTQPFEYYDNQKTGKLMSRLTTD LFEISEVAHHGPEDVFITIMTLAGSFLLMLTIHVKLAIATFILLPFITIALGYFNKKMTK ANTDIYDNLGEFNAGIEASVSGIRVTQSFANEPFERKQFNYLNQMYRKSKLYFYKVMGVS SAYNYLLIRLINLFSLIFGAYYTIKGEITEGQFVGFILLANIFIRPIEKVNNMIESYPKG FAGFKRFTEEMDKQPSIKDLPGAVAVSHLEGTIAYKDVSFAYENGTKVLDHINLKIQPGE TVAFVGQSGSGKTTLCNLLPRFYEVSSGEITIDDRNIQQMTLVSLRKQIGIVQQDVFLFP GTLRENIAYGNLNATEIDIQQAVKLAHLEHVIQLMPDGLDTIIGERGVKLSGGQKQRVAI ARMFLKNPPILILDEATSALDTETEQVIQESLNSLADGRTTLIIAHRLATIKHADRIIVV SDQGILEDGTHETLYAQRGHYRRLYDAQFRT >gi|308151759|gb|GL476263.1| GENE 98 98025 - 99035 1048 336 aa, chain - ## HITS:1 COG:lin2301 KEGG:ns NR:ns ## COG: lin2301 COG0180 # Protein_GI_number: 16801365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Listeria innocua # 2 336 3 331 331 466 70.0 1e-131 MKTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRS LAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGV SAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQEILTMPEV KIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNKEE KPGITNLLNIYSAATGQTVEELVQEYEGKGYGDFKADLAEAVVALLEPIQVRYQELLASE ELDMILDEGAENARQVANKTLQRMKNAVGLGRKVRR >gi|308151759|gb|GL476263.1| GENE 99 99395 - 99793 403 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 129 1 129 131 194 79.0 3e-50 MLTLYTSPSCTSCRKARAWLQEHEIPFKERNIFSEPLNIEELKAILIMTEDGTEEIISTR SKVFQKLNMDLDELPLQDLLELVQENPGLLRRPIMIDEKRLQVGFNEDEIRRFLPRDVRQ LELRQAQLMAGL >gi|308151759|gb|GL476263.1| GENE 100 100136 - 100798 803 220 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 218 1 217 217 91 30.0 1e-18 MEMEHINENTIRVLIGNEDLADRGITFLDLLGNHKDVENFFYSILEEVDVEDEFQGSEAV TFQVLPKNDGLELFISKNVAMDDLSSLEGLSEVNADVSELIRKQIEADKAAADELDEMEA TDETNRNVIFELDNFEAMIQLSKEVFMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNE IAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND >gi|308151759|gb|GL476263.1| GENE 101 100887 - 102065 455 392 aa, chain + ## HITS:1 COG:L168238 KEGG:ns NR:ns ## COG: L168238 COG4469 # Protein_GI_number: 15673710 # Func_class: R General function prediction only # Function: Competence protein # Organism: Lactococcus lactis # 1 288 1 282 329 156 37.0 6e-38 MLTALTADNQELFSLIDCSIDELTQIRSEQAFVCPMCHQSVILKAGPIKIPHFAHRKKNS CWYEAEAETEEHLRLKQLFAEKCLREKLSFQVEAYLPALKQRPDLLIGKIAIEIQCSPLP IKRLVERTETYQTHGYQVVWILGERLVPKDKLTQLTKQFLYFSESLGFYLWSANKKQERI ELLCHIEESQCQQFYRRKQSWDFYEKKLLEIFRLPTANLNLLPDRRHTGQLMHDYYQKLT QQLGYRNAQLLRTQSFLYTKGCHLLQLPPWFYYPGLKLLPSSEEDIHLKMLVWEALKTKE GRLVTKQELWRILEAVFLEEGNFVWQPLPNIGLKKLFKIVGNSLLSWLQECYVLIKVNNK YLITSIFLREDPEKLIHWLKKVKKQHFFSHTC >gi|308151759|gb|GL476263.1| GENE 102 102113 - 103924 2153 603 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 1 601 1 601 601 666 57.0 0 MSEIKQLPTRDEVPTPLTWDLTKIFKDDASFDVAYNQLTEELNQAESFKGTLGNGAEAFL AALEYVLDVYRKVETLYVYSHLKNDQDTTNTAYQALYARASSLYAQVSEAVSWFDPEVLT LSDEQIWGYFEEQPKLAVYRHYIQNILDERPHVLSMEQEALLAGASEIFGASSNTFSILN NADLEFPTVQNAEGETIQLSHGVYGQLMESVDPSVREAAFKGLYKVYKQFRNTLASTLGA HVKTHNYKAKIRNYDSARAASLASNHIPESVHETLVAVVNKHLPLLHRYVKLRKKLLNVE ELHMYDLYAPLLGEAPIRYSYEEAKEKAIEALKPLGEDYLSIVKEAFSSRWIDVIENQGK RSGAYSSGAYDTAPYILMNWHDSLDQLFTLVHEMGHSVHSYYTRNNQPYVYGDYSIFLAE IASTTNENILTEYLLQTETDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT PLTSEYLSEYYGELNAKYYGPEVVRDEEISYEWARIPHFYYNYYVYQYATGFSAASALSK HILAGEEGALEKYLNYLKAGSSDFPIEVMKKAGVDMTQAAYIEDAMKVFEERLTELEALV EKL >gi|308151759|gb|GL476263.1| GENE 103 104018 - 104677 595 219 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 160 17 176 272 74 32.0 1e-13 MVEIYLFVNPLGGVCLEIEKEIIQLSVNDKKKIQLRFIPLLNMKTINEFLSRQHIPINDI KRRNRIFEDLYSAALDYKAAQLQGRKKGRQLLIGLQKAVAEDGLAYSPELSEELLLAAGG DIDMYRKDRQSDFVKESFQTDQKVAREMGIKQHPTAVVYNYTCKNDFGILVENFENMDEI KQLCRVHPHNELLLDQGDATFEFKRRSNYHFPNGHLHLL >gi|308151759|gb|GL476263.1| GENE 104 104741 - 105319 647 192 aa, chain - ## HITS:1 COG:lin0964 KEGG:ns NR:ns ## COG: lin0964 COG4116 # Protein_GI_number: 16800033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 185 1 184 194 134 41.0 1e-31 MSEHLEIEFKTLVSPQDFKRLIDHFAIQKTDFFTQTNHYFDTDDFQLKAQRMGLRIRVLA DRGELTLKVPAPEGLLEINDPLSLETANHFIKRNHLPTEGAVAKKLQELGIEIASIHLIG SLKTARAEKQIPQGLLALDESWYNQQHDFELELEVTEAESGKQAFQTLMADLNIPITLAP NKIQRMMRTTAP >gi|308151759|gb|GL476263.1| GENE 105 105516 - 106190 808 224 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 263 72.0 1e-70 MEREWELFLAPYEQAVSELKVKLRGIRKQFREQDKHIPIEFVTGRVKPVDSILTKTAIRH IPLNRIEEEMQDIAGLRIMCQFVEDIYQVVALLRNRKDLKIVEERDYIENKKESGYRSYH VVVEYPVQLVTGEKIILAEIQIRTLSMNFWATIEHSLNYKYQGVFPEEMKERLQRAAEAA YLLDEEMSSIREEIQEAQHYFSHGRGLLENEYYKQIKNETPENQ >gi|308151759|gb|GL476263.1| GENE 106 106203 - 107000 675 265 aa, chain + ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 2 264 6 268 270 268 52.0 9e-72 MKVAIVHNSEEKSKQVTKQLTTLLEQNQIQIDNRQPELVISVGGDGTLLSAFHRFNHLLN EVSFLGVHTGHLGFYTDWRDYELKELVESLCIHREKSTSYPLLDVRIRFRDGKPDKHFLA LNESTIKRGNRTMVGDVFIKDELFERFRGDGLSISTPTGSTAYNKSIGGAVLHPSINAFQ LTEIASLNNRVFRTLGSPIVIAHTEWLEIKLQESDDYFVTVDQLDIYQENIASVCYRIAD ERIHFASYRHMHFWHRVKDAFIGED >gi|308151759|gb|GL476263.1| GENE 107 107008 - 107901 261 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 285 41 279 285 105 30 3e-21 MEFQWTYDKETTQQVKYFLKEQGVSKGLLAKVKFQGGKIQVNGTVQNAIYPLQTGDVVKM TIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGYYKRQ NYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLNEH QLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRVHFEA IGCSLLGDEMYHGKMDQGIERQALHCMELIFTHPFTKETVHLISPLAEDMKSVDDTL >gi|308151759|gb|GL476263.1| GENE 108 107932 - 109293 1917 453 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 2 453 6 461 461 408 47.0 1e-113 MNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPK ELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLS SEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ ENHLVGVISLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD DHLLGIVTVDDIIDVIDDEAASDYSGLAGVDVEEVSENPLKAASKRLPWLITLLFLGMST ASLISNYESLVSEASILAVFISLITGTAGNAGTQSLAVAVRRLAMKDEKDSNFGRLILSE VLTGLVTGAVTGLTIMIVVGVWQHNLPLGFVIGMAMLCAITVANLAGSLIPMLMDKLGFD PAVASGPFITTLSDLTSVLIYFNIASMFMRYFV >gi|308151759|gb|GL476263.1| GENE 109 109411 - 110040 923 209 aa, chain - ## HITS:1 COG:SP1260 KEGG:ns NR:ns ## COG: SP1260 COG3142 # Protein_GI_number: 15901120 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 225 53.0 4e-59 MIKEFCAENFTKIPQAIQKGANRIELCDNLAVGGTTPSTGVIEEVLAYAGEHSVPVMTII RPRGGNFVYNDIELKIMHTDLIEAKKLGTDGIVIGCLTEDGWLDEEALDLFIETAEGLQI TFHMAFDALSKENQFKAIDWLAERGVTRILTHGGPAGTPIEDNFDHLKELIAYADQRILI LPGGGISTENVQTVMDTLKVTEVHGTKIV >gi|308151759|gb|GL476263.1| GENE 110 110170 - 111015 686 281 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 280 1 273 273 230 45.0 3e-60 MLKKIERAQQLLKKEAAVFRCPTCHEPMHVEGVGLICQQRHQFDLSKKGTLYFLNHGVQT EYNKKMFTSRGKMIQSGMYAPVLNKIMHYLPQNKTVVDVGCGEGGFLTELSQAGLSGLKI GFDLSKEGIYLASNQPIDAFWCVADLTNLPFANEGLDTILNIFSPSHYQEFRRVLKADGT VIKIIPEENYLKELRAAFYPNDEKKQSYSNQKVVQRFAEELAVEVDERITYCFDIPEERR LDLLEMSPLEWQVSQEVKAELQQRPLEKITIDVRLLVGRKR >gi|308151759|gb|GL476263.1| GENE 111 111327 - 111833 622 168 aa, chain + ## HITS:1 COG:SP0486 KEGG:ns NR:ns ## COG: SP0486 COG0219 # Protein_GI_number: 15900400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Streptococcus pneumoniae TIGR4 # 1 167 1 166 167 237 67.0 6e-63 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYENDKLD >gi|308151759|gb|GL476263.1| GENE 112 112050 - 112694 772 214 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 160 42.0 2e-39 MKLYFTRHGKTEWNQQKRFQGMTGDSPLLPTSYDEIKQLGQYLQDIPFEKIYSSPLLRAK NTARGIQQELTHPVEIVYTDTLKELGLGRLEGQYIEEMRNFYGEELDHLRHRLDLYDPTI FDGEPIEQAIQRISETVAEAAKQHEGPVLFVGHGAALTAAIQAMAGKPLSELRTMGGLLN NSLSILETKEASRNMPYDLTLWNDTSFLAKEKAQ >gi|308151759|gb|GL476263.1| GENE 113 112721 - 115330 3004 869 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 10 860 3 824 834 726 49.0 0 MVTLFGEDEEKAFIVGTVQAIFFENPSNFYKVVLVNVTDTNTDYLEKEIVVTGSFGQVQE EEPYRFFGHFVDHPRYGRQFQVDSYQQERPTSASGVVNYLSSDKFPGIGKRTAEKIVEVL GESAIDRIIDDPSVLEEVTVLNEKKRQVIVETIRLNHGMEQVIVGLNRYGFGSQLAFSIY QTYQEETLSVIQENPYQLVEDIEGVGFKRADNIAEQIGIQADSAVRIRAAILHEVFEHSI RSGNTYVQADVLLEEAIRTLEASRPVEISPDQVANEIITLVEHGKIQQEETKLFENSLYF SEWGIGTSIQRLLSRKKEIHYEEEEVQKNIRMIEKRLNIQYGDSQQAAIEEAIKSPLFIL TGGPGTGKTTVINGIVSLFAELNGLSLDLKDYTQEMFPILLAAPTGRAAKRMNETTGLPA STIHRLLGLTGREKNPSLTAKELEGGLLIVDEMSMVDTWLANTLLKAIPTNMQVIFVGDK DQLPSVGPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIPLAHEIKEGKLPADFQKNQKD RSFFVSDIDHIEEYIRQIVTKAKAKGFTPQDIQVLAPMYRGAAGIDALNKMMQEIFNPND GKKKEVKWNDTVYRIGDKVLQLVNTPELNVFNGDMGEIVGITLAKDSEDKVDELVLQFDN NEVTYKRNEWNKITLSYCCSIHKAQGSEFRMVLLPMVHQYSRMLQRNLLYTAVTRSKELL ILLGEVSAFETCVKNESASRMTMLKERIVNAEQMTLTTRTQLEAYEEGLTADHPFTEKET KAVSYETEQQSTKANQIKETDEQLVDTTVQEVSLFADEGEESTPETANKATKVVEEPLPK EPRLTVEIIQTNAVDPMIGMKDTTPYQFM >gi|308151759|gb|GL476263.1| GENE 114 115397 - 116356 823 319 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 5 319 3 302 302 164 35.0 1e-40 MNIHYYLIINEQASSGNGRKVARKVIQQLKQQELKYTALYTDYAGHEKELTKELAETTLL PWSEDLDVSTFPILVVLGGDGTLHNVINSLLPYDSAIPLSYIPCGSGNDFARGVGLSRNI DKALHQILRTRRPKEIQTIHYVEANQEEIGLATNNVGLGLDAAIVEKTNESSSKKALNKF KLGSLSYISSIIHVFFKQKGFPILVEMNGKQYTFNRAFLCTVTNHPYFGGGVSIMPTANP RKAVVDLVVVERINIFKILWLIFLLLRQKQGKSKHFHHFQSSKIRIVSTIPQTIHADGEI LGKRSIDMVYTTQKRLFWF >gi|308151759|gb|GL476263.1| GENE 115 116619 - 117125 476 168 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 168 2 161 162 101 41.0 6e-22 MQNSFQANRKLRTVLANGIIMGLYIVLSLLVRPVSSGMIQFRISESLNHLVVFNRKLMWG VLGGVIFFNLFFGFGVIDALFGGAQTLFALSLTAFLQKKVPSIPVRMCLNSLFFTVSMFF IAFMLVPSGGQAFWTTYGWLALSEAIIMTISAPIMYFINKSLKFETRI >gi|308151759|gb|GL476263.1| GENE 116 117363 - 118568 1517 401 aa, chain + ## HITS:1 COG:SPy1205 KEGG:ns NR:ns ## COG: SPy1205 COG2348 # Protein_GI_number: 15675170 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 5 401 9 404 407 327 44.0 3e-89 MYTFKIGIPAEVHDTFVKNHPLCNLLQSSSWAKVKDNWGSEIVGVYEKDTLVASSLVLIK PLPAGFTMLYTPRGPVMDYTNERLVSYFMAELKKFGKKKRALFIKMDPAVHYQDFHLGEE HQPHAEATAIIETLKEAGAKYQGLTMDMGATIQPRFQANIYREDFSEEQLSKSTKKMIKT AEKKGVVVQQGHVDFVDEFEKVIQSTMERQHISLRNSDYFKKLLNIYPEDSFIMLAQVNL KERLDSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEENIAEAGEIVTVA GALAVTFGPTSEILYAGLDDRYKRYMPTYVTWRDAIQECFNRGCESCNMGGLEGSLNDGL IKFKANFNPTINEFIGEFDLPVNKLLFKASEYAYKLRKQKK >gi|308151759|gb|GL476263.1| GENE 117 118624 - 119259 709 211 aa, chain - ## HITS:1 COG:L166479 KEGG:ns NR:ns ## COG: L166479 COG4684 # Protein_GI_number: 15672553 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 9 186 11 189 196 89 36.0 6e-18 MNNTKKFTLTAMFLAILLLLALTPLGFITLGPLNSTTMHIPVIIGSIVLGPKIGSMLGGT FGIISLIKNTTAPTPLSFVFSPFIPVIGTDHGSWKALLIVLIPRILIGVVPYFAYKLLNK LTKEKAQPVSLFVAGVLGSATNTILVMNMIYFLFNSAYAEIIGKAGTAVYLAIIATIFSS GVPEALVAGVAASAIASVLLRLMKRNATQKL >gi|308151759|gb|GL476263.1| GENE 118 119263 - 119817 520 184 aa, chain - ## HITS:1 COG:SPy1222 KEGG:ns NR:ns ## COG: SPy1222 COG0452 # Protein_GI_number: 15675186 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 2 177 3 178 181 209 65.0 3e-54 MKTILLGVSGSISAYKAADITSQLAKLGYNVEILMTKSSTAFITPLTLQSLSKNPVHTDV MMEIDPSKINHIELAKKADLFLVAPASANTIGKLAHGIADDLLSTVALALYPETPKIIAP AMNTYMYQNPIVQRNIGILKEVGYQEIIPREALLACGDYGRGALATVEDILQTVMKILAS DNKE >gi|308151759|gb|GL476263.1| GENE 119 119814 - 120587 881 257 aa, chain - ## HITS:1 COG:SPy1221 KEGG:ns NR:ns ## COG: SPy1221 COG0452 # Protein_GI_number: 15675185 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 251 1 226 228 152 39.0 6e-37 MDVLVTAGGTSEPIDNVRSITNHSSGGLGKAIAESFLAAGHNVTYVTTKHALRPTQQLDL SIKEIETTVELATTLEQLFAEKQFDAIVHAMAVSDFTTEAAQTEEQFIDSFAQQLSEQTL PKTKEALVTIVQNTLNQIADIPQTATKISSDTDRLLIFLKKNPKVIQMIRDKQPQTVLVG FKLLVDVSQAELVQVAQAALVKNRCDFVLANDLMNVHETEHEGLLINETGIVQEACSKQG IGSMIVKNVEKKWREQQ >gi|308151759|gb|GL476263.1| GENE 120 120603 - 121595 1419 330 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 2 323 323 310 45.0 3e-84 MNSFQAFTLREQDTSVIGQLETITLDDLSEGTVVIKAAYSSVNFKDSLASKKDGGVIRNY PMIPGIDVSGTVVTSEDPRFKEGDKVIVTGYQLGVSHTGGYSEYVRVPGDWVVPLPEKMS LKEAMIFGTAGFTAGLSVTALEDDGLRDDKEAPIIVTGATGGVATLSIAMLHQLGYTSIT ALTRKPDSFGLLKELGVSECLLVEDFLATPVKALMKQRFAFAIDTTGGEITSAVLPQLRY DGRSAICGRAAGITLETTVLPFILRGVHLLGIDSVNVGMDKRKIVWQRLATDLDITEKAV YQEITLEELPPVFEALQAGQHIGRTIVRIS >gi|308151759|gb|GL476263.1| GENE 121 121859 - 122401 645 180 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 180 1 180 180 205 58.0 3e-53 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ FFSQQPLEQKIVYNEEESTLYYDEEHGYELKWLIPASNEKEMEPVIITFDKNGEYKTFEP SLSETFIYVIDGSIRLTLGEATYIAKKGQTMYYQATEPHQISNNGRGKSRALIVATESYL >gi|308151759|gb|GL476263.1| GENE 122 122427 - 123512 1214 361 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 1 361 1 362 364 536 75.0 1e-152 MRNHVISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSG DVYFDGKRINDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEAL RLVQLPGYETREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRD LQQRLGITFIFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESN IVDGVMLEDNLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLF RGVHYEIICFDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYD E >gi|308151759|gb|GL476263.1| GENE 123 123531 - 124337 922 268 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 264 269 347 73.0 1e-95 MKTMRRIYSIPYVMWLLLFVIAPVLMIIYQSFFDMNGQFTLANYQTYFTSGTYLSMTINS VWYAFLITIFTLLVSYPTAYFLTKLKHKQLWLMLVILPTWVNLLLKAYAFIGIFSIHGSI NQFMSFMGLGTHQILFTDFSFLFVATYIEIPFMIMPIFNALEEMNPSLISASRDLGASSA ETFRRVIFPLSLNGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLVTQNWGM GSTIGVILIVAMFIVMLLTGEKKKGRGK >gi|308151759|gb|GL476263.1| GENE 124 124337 - 125173 851 278 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 265 2 262 268 315 68.0 9e-86 MQKKKFKWSYVYLFVVFALLYAPIFYLIFYSFNDTQTMNQFTGFTLDNYRNVFEDTRLLT IVLNTFLLAFLSALIATIIGTFGAMGIYYTKRRKNRNTLLSFNNILLVSPDVIIGASFLI FFTAVGFISLGFTSVLLSHIAFSIPIVVLMVLPKLQEMNDSMVDAARDLGANNVQVIKNI ILPFLAPGIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLEINALSAL VFLFSMILVVGYYFISKDNTPKRLKKMRREQSEVAKLK >gi|308151759|gb|GL476263.1| GENE 125 125170 - 126243 1344 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 465 64.0 1e-131 MKKLQSLFIGIIAIIVILFFGVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFEKETGY KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKEGAYAFMNFMLRPENAAQNAEYIGY STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK >gi|308151759|gb|GL476263.1| GENE 126 126394 - 127077 441 227 aa, chain + ## HITS:1 COG:no KEGG:EF2648 NR:ns ## KEGG: EF2648 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 402 100.0 1e-111 MKRKTIRILLISSGLILILLVGYRLYLEYQTDIQLFLNPKASKTQLLERIRSHGFSAALL LVFLTAIMCAVPGIPTSVIGVIAGLSFGPFSGTLINVLGNSMGNLVAIFLMHHIKFLDKK TETNHWVQSIRRMKHPKIGIMVGYMIPIIPSSVINFAADTMQLPLKNLIAAIFIGVIPSS ILYACGGEALFHGYNKTAVLLIVSVLLFVGLVVIIEKDRKRFQKTVL >gi|308151759|gb|GL476263.1| GENE 127 127187 - 128479 1324 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 6 375 4 374 384 314 59.0 2e-85 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFNLPLSDVMIA GFIPAVFGLITAVVLANIMRSKGSMVKETDLVEEQTKELLPLKKALIAPVLAIVLLLLNP IGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIGAG AIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPAIL DMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMTIV ATILYGFILN >gi|308151759|gb|GL476263.1| GENE 128 128501 - 129649 1507 382 aa, chain + ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 1 378 1 378 385 429 62.0 1e-120 MTKKFVLAPDSFKESMSAKEACLAMEKGILAVFKDADIQHVPMADGGEGTVDSLVDATGG TRVPVRVAGPLPDQIVETYYGLLGDQETVVIEMAKANGIELVKAAERNPLITSTYGTGEM IQHALNHGAKKIIIGIGGSVTNDGGAGMIQALGARLLDKEGQELTRGGGALDKLAQIDLT QFDQRIFATEVLVASDVNNPLTGPTGASHVFGPQKGATEEMVAQLDKNLAHYAAIIKKEI GIDVEMMPGAGAAGGLGAGLLAFTKAQLRPGIDIVVEVNQLEEKIKAADYVFTGEGGMDF QTKFGKAPYGVSRLAKKYQKPVFACAGYIGKDVDVLYEEGMTAIFGILAKAEPLEAALKN GPVNLERTVENIARTLQLVPCD >gi|308151759|gb|GL476263.1| GENE 129 129791 - 130804 879 337 aa, chain + ## HITS:1 COG:CAC2833 KEGG:ns NR:ns ## COG: CAC2833 COG3835 # Protein_GI_number: 15896088 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Clostridium acetobutylicum # 2 327 1 337 344 137 31.0 4e-32 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE IYKDTSLEKKGTNEPIILNDHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE KKKKQKNQFIQHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTKDKRLLSSYYPGHEI FEWENCYLVITSEPPQITKPVTEYLVISSEKATIQQMVQEAQNTYLLLSFLQLEKAKFYQ AEDFFIQGIFNFPFHIELDFFETIQTIYDEYYETVIFFANHNLNINETSQVLHIHRNTLN YRLKRIHELTGMDPKVWQDFWKLFYYFAYCFKERFEK >gi|308151759|gb|GL476263.1| GENE 130 130927 - 131829 1069 300 aa, chain + ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 299 309 270 47.0 2e-72 MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDS VFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTS ALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLR LDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLK GVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLEILPKHLTVYCGEEQTK >gi|308151759|gb|GL476263.1| GENE 131 131973 - 132683 785 236 aa, chain + ## HITS:1 COG:L62955 KEGG:ns NR:ns ## COG: L62955 COG3597 # Protein_GI_number: 15672246 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Lactococcus lactis # 32 236 12 216 217 238 58.0 5e-63 MRRKKHKNKKKQELFEEIEKQELAEQETKQLNEEIEDPEFRSFFQDVLKKFPQKTSTAIM NAFATSKGKAEQLVTNSQTQLDKVFDEFLAGVSPDVKKKSHQTIHFAALSAAIIGFSPIP FSDAFLLVPVQLTMMSRLHKIFGQSWSESLGKSLTKELVVVSLGKSAVGNILKVIPVVGT VTGGMVNASVAVAITEALGWVTVKMLNDGVDIFDDVMSFKGQFSTLFKAIQNAKKK >gi|308151759|gb|GL476263.1| GENE 132 132967 - 134676 2009 569 aa, chain - ## HITS:1 COG:SPy0184_1 KEGG:ns NR:ns ## COG: SPy0184_1 COG4176 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 5 305 8 306 306 368 64.0 1e-101 MNKYQLPVASWVESFTDWLTSTFAGLFSFLQTIGQSVMDNITALLTAVPPLVLIVLLTIA AFFISNKKIGLSLFTFIGLMFIYNQNLWNDLMSTVTLVLLSSVISIIIGVPLGILMAKSE KAKSIITPILDFMQTMPGFVYLIPAVAFFGIGMVPGVFASVIFALPPTVRFTNLGIRQVP NELVEAADSYGSTGWQKLFKLELPLAKNTIMAGVNQTTMLALSMVVIASMIGAPGLGRGV LSALQRAQVGNGFVNGVALVILAIIIDRFTQHLNNKKAAPKAAGATSKKKKYGIIAAVVV IVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKDMGYDVKTTPLDNAIMWES VAKGETDAMVGAWLPGTHAEQYKQYKDKLDDLGENLKGAKLGIVVPSYMDVDSIEDLSDQ AGKKITGIEPGAGVVAAAEKTKEAYPNLKDWSIETSSSGAMTVALGQAIKNNEDIVITGW SPHWMFAKYDLKYLADPKGTMGGEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVM LEINEGKDPQEAARDWVDSHKDQVAEWKK >gi|308151759|gb|GL476263.1| GENE 133 134669 - 135859 1471 396 aa, chain - ## HITS:1 COG:L74195 KEGG:ns NR:ns ## COG: L74195 COG4175 # Protein_GI_number: 15673434 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Lactococcus lactis # 1 389 1 391 408 550 74.0 1e-156 MPKVKVNHLTKIFGKKTKPALEMIRANKSKTEILEKTGATVGVYDVNFEVEEGEIFVIMG LSGSGKSTLIRLLNRLIEPTSGNIYIDGQDISSLDKEGLREVRRNKMSMVFQNFGLFPHR TILENTEYGLEIRGVPKEERQAKAEKALENSSLIAFKDQLPSQLSGGMQQRVGLARALAN DPEILLMDEAFSALDPLIRREMQDELLDLQENVKKTIIFITHDLNEALRIGDRIALMKDG QIMQIGTGEEILTNPANEYVRTFVEDVDRSKVLTAQNIMVPALTTNIEIDGPTVALKRMR QEEVSMLLAVDKKRQLKGVVRAEKALEARKNGTSLVECVDPEIQTIDKDMLVNDIFPLIY DAQTPLAVTDNGKLLGVVIRGSVLEALAETEVNEHE >gi|308151759|gb|GL476263.1| GENE 134 136059 - 136691 609 210 aa, chain - ## HITS:1 COG:SPy1259_1 KEGG:ns NR:ns ## COG: SPy1259_1 COG2188 # Protein_GI_number: 15675218 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 149 149 109 36.0 4e-24 MASKKISLTKPKYQQIAVDVAEKIAEGKLHVGDKIHARSTLANQYQVSPETARKAIIVLV DLEIVKAKHGSGFYVASKEKAQDFVTQYQDVQTIAEIKEELLDSVAKQKEELTHFSSILD TLVEQTKRFDSFNPMNPYSLVLTEEAAYLEATISEMNFWQNTSATIIAIKHKEELLVSPG PYAKISLNDTLYFVGHDESTLQRVQNFFYP >gi|308151759|gb|GL476263.1| GENE 135 136706 - 138652 2055 648 aa, chain - ## HITS:1 COG:lin2179 KEGG:ns NR:ns ## COG: lin2179 COG0488 # Protein_GI_number: 16801244 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 644 1 650 650 667 57.0 0 MILLQANQVARHFGSETLFENIHLEIATKSRIALVGRNGAGKSTFLKIIAGIDAPDSGTI AKNKTATLGYLAQNTGLESDKTVWEEMTKAFADILEMEQRMRELETKISEMEPTTSVYEG ILKEYDQLQHTFSEKNGYGYENEIRSVLHGFGFDESFYTKDIQTLSGGQKTRLALARMLL QKPDILILDEPTNHLDIETLSWLESYLPSYAGALLIVSHDRYFLDKVVNEVYELSRKKMT HYKGNYSKYLELKAEQLASEWKAYEKQQEEINKLEDFVAKNLVRASTTKRAQSRRKVLEK MDRLDRPQGDEKSAHFLFDSEKVSGNVVLQVEDAAIGYDPEHILSEPIHLDIRRKEAIAL VGPNGIGKSTLLKSIIDRIPFIKGSKTFGTNVSVGYYDQEQANLHGNKTVLAELWDEHPT TPEKEIRSILGGFLFSGDDVEKTIPLLSGGEKARVALAKLAMDRDNFLILDEPTNHLDID NKEVLENALIDYEGTILFVSHDRYFINRIATKVVELSEKGSKLYLGDYDYYLEKKQEEEE ITALLANEEAAKKPEPVTAKNTFYQNKEQQKLLRTLQRKITQVEENLAQLDTTIAQLEAQ MSQPDILENHVELLALNQQLDDARQQQDELLEQWENFSLELEEMENNN >gi|308151759|gb|GL476263.1| GENE 136 138866 - 139516 852 216 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 207 8 209 215 246 60.0 2e-65 MKDQVIPKATARRLPLYYRYLRMLHDTGKNKVSSTELSEAVQVDSATIRRDFSYFGELGK RGYGYDVENLMNFFAKTLNEDELTNVALIGVGNLGSALLKYKFHQSNSIRVSCAFDVNED IVGRIVDGIPVYPMEDMMEQIRVQQIEVAILTIPARKAQEVVNKLAEAGVKGILNFTAAR LVAPPEVLIQNVDLTNELQTLIYFLHHDNELIDEEE >gi|308151759|gb|GL476263.1| GENE 137 139559 - 140212 671 217 aa, chain - ## HITS:1 COG:BS_ydiL KEGG:ns NR:ns ## COG: BS_ydiL COG1266 # Protein_GI_number: 16077668 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 3 209 1 221 244 109 38.0 4e-24 MTLRKSSLFILVTYIIAFFGPLLFSGISPNAAINVTTALYIIGALVMIGIFLKTTEPSPL EETATLKSPIFIFLLGVSGIFIAMLIQGVTFAIEVAITGEQATSQNTQAIVAVILANPLF ILATTIGGPIMEEFVFRYAFIHLIQPFTNFWIAATVSSAIFSLAHADGHFFVYFFMGFFF ALLYKQTGKIWTSIIAHCGMNTIVIIVQLLLHNGAIQ >gi|308151759|gb|GL476263.1| GENE 138 140231 - 140407 201 58 aa, chain - ## HITS:1 COG:no KEGG:EF2636 NR:ns ## KEGG: EF2636 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 76 100.0 4e-13 MKQRLLTALIATFVYFVIANLGNLVFSVTEGIVSTLWESLFFFLFVFLLLGYRNNRKK >gi|308151759|gb|GL476263.1| GENE 139 140640 - 140924 427 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 91 1 91 94 107 68.0 7e-24 MLKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKI GDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE >gi|308151759|gb|GL476263.1| GENE 140 140982 - 142607 1605 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 622 59 1e-177 MAKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIE LATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQLIADAMEKVGNDGVITIEESKG IETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQILQ QSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT DDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNV IGKVAALEAEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANG EWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPAAPAPMMDPSMGMGGM M >gi|308151759|gb|GL476263.1| GENE 141 142910 - 143629 770 239 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 63 237 65 231 235 77 32.0 3e-14 MEKYTIGVVPLTIETKEYCQNWFVSNQVECQIIQGTNILLHLHHIDGLVIEVTDHQQVNT CCELLMTIRKQSDLPIWLFSRTEVISKVNRIIYLQLGADGVFDHSYDRQECMLSMSNLLQ RVKRRFYPKLAIANEEQTVTKNLSERLYLIAPNLSVYLGSGEEILLTKLEFFTIEYLYKH AGQTITYEELYKNVWKDTANERKYRVANVIFHLRKKIEQDVNKPQYIKTIRSKGYMLTV >gi|308151759|gb|GL476263.1| GENE 142 143653 - 144288 757 211 aa, chain + ## HITS:1 COG:no KEGG:EF2629 NR:ns ## KEGG: EF2629 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 211 1 211 236 209 95.0 5e-53 MWQFLTKNNEDEEYEKMPDFENEQSMKAQPTVTEEAIFDDEFVYAKEQSAKVKQVQQQVP TELSEESFSFAEKLEEENQLYQQSIKKLTDQLLMQTNEVEALRKQVVEKDVQLEQLKETL TDKETTITSLQKQLSEAKIQQRQTSEENLDTAVTLSQKEIGEVLLEAKRQAKETISQANQ QVATVHEEMEQRLATLTRMKQVAREYQAYCE >gi|308151759|gb|GL476263.1| GENE 143 144380 - 145186 642 268 aa, chain + ## HITS:1 COG:SPy0857 KEGG:ns NR:ns ## COG: SPy0857 COG1705 # Protein_GI_number: 15674890 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Streptococcus pyogenes M1 GAS # 186 256 42 112 235 84 61.0 1e-16 MKKRKARYLKLVCLGVLGTYAGASYYNSEPLIAQEETETSHENRQLVLEEKRADQVNQDQ GTLTSSTLNETVISSSEQQESSIQDDSSDHQENNVEPSESENSLPPQEKPIASTKPTESL QNEQPVSEERKALTEKSPHNQEPQNSTLTEKTKEPLVHSEIDNSQEKEKQAGIQQQAEAN FVVQENASTSEFIRKIGEEARVIGQQHDLYASVMIAQAILESGSGNSALAAPPNYNLFGI KGAYQGQSVSFPTQEDIRRREEEKFIHG >gi|308151759|gb|GL476263.1| GENE 144 145328 - 145738 293 136 aa, chain + ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 135 21 145 145 100 46.0 9e-22 MKELFRKYREVLAYLFFGGATTVVNLVVFFVCQNVLGLDYKISNTISWFLSVLFAFFTNK YWVFASKHESIAGFFKEMGLFYWYRILSFVADMGLMILLIDGIHFSSFWAKMITQVVVVI LNYFFSKFFIFKEKEV >gi|308151759|gb|GL476263.1| GENE 145 145816 - 147300 1562 494 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 483 6 487 495 771 76.0 0 MDYTYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLV NYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGP LAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYI GGADATSNVRAGKIFGIPVSGTHAHSLVQSYGNDYEAFMAYAKTHRDCVFLVDTYDTLKA GVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTI LNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTP GKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDI FVEGKRVYELPTLDEIKQYAKENLDSLWEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR KDVKHLTETVNKEA >gi|308151759|gb|GL476263.1| GENE 146 147303 - 148130 1161 275 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 275 2 274 274 416 76.0 1e-116 MTTLQEKIIQELGVLPTIDPKEEVRKSIDFLKAYLTKHPFLKTFVLGISGGQDSTLAGRL AQLAMTEMREETGDMSYQFIAIRLPYGEQADEADAQAALAFIQPDVSLRVDIKPAVDAMV GSLENAGVQISDFNKGNMKARQRMITQYAVAGENAGAVIGTDHAAENVTAFFTKYGDGGA DILPLFRLNKRQGKALLKELGAPEALYLKIPTADLEDDKPLVADEVALGVTYDAIDDYLE GKKVSETDQQTIENWYKKGQHKRHLPITIFDDFWK >gi|308151759|gb|GL476263.1| GENE 147 148323 - 150128 2023 601 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 598 1 592 593 554 51.0 1e-157 MKHVTKLGITIITGVLALLFEFILHQPNWAYGIILITGSVMALMMFWEMIQTLREGKYGV DILAITAIVATLAVGEYWASLMILIMLTGGDSLEDYAAGKANQELKSLLDNSPQKAHRLN GENLEDVSVEEINVGDELVVKPGELVPVDGLVKTGTSTVDESSLTGESKPIEKNPGDELM SGSVNGDGSLKMVAEKTVADSQYQTIVNLVKESAARPAHFVRLADRYAVPFTLVAYLIAG VAWFVSKSPTRFAEVLVVASPCPLILSAPIALVAGMGRSSRHGVVIKSGTMVEKLASAKT IAFDKTGTITQGQLSVDQVQPINAGITAAELVGLAASVEQESSHILARSIVAYARKQDVP LKNITDLAEVSGAGVKAFVDGAEIRVGKKNFVTQESQATEKIDKTTIHISRNGTYLGRIT FTDTVRPEAKETMEKLHQLHLQRILMLTGDQESVAETIAAEVGITEVHGECLPQDKLTIL KELPKENHPVIMVGDGVNDAPSLAVADVGIAMGAHGATAASETADVVILKDDLSKVSQAV EIAQDTMKIAKQSVLIGIFICVLLMLIASTGIIPALIGAMLQEVVDTVSILSALRARRIG K >gi|308151759|gb|GL476263.1| GENE 148 150220 - 150504 398 94 aa, chain + ## HITS:1 COG:L86826 KEGG:ns NR:ns ## COG: L86826 COG3592 # Protein_GI_number: 15672668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 90 15 104 104 112 60.0 1e-25 MKGNQIDGQPVTEEQLLKEGYRKYTGKGIDIFYNKDICEHIGNCVRGNPEVFEVGRKPWI IPDNESVENDMIVVDSCPSGALKYIRKAGNEYAN >gi|308151759|gb|GL476263.1| GENE 149 150494 - 150769 386 91 aa, chain + ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 1 88 1 88 92 91 55.0 3e-19 MQIKEENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPSYRGQKLAEKLVLAGVEK ARKEHKKIIPLCPFAKKEFDTKPEYGDVLRK >gi|308151759|gb|GL476263.1| GENE 150 150937 - 151173 387 78 aa, chain + ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 78 5 82 82 72 46.0 2e-13 MYNLILTLVIILSVLIVITVMMQPSKQNSAASAFTGGADKLFGKQKARGFEAVMQRSTAV LGAIWMILLFVLAFLSSK >gi|308151759|gb|GL476263.1| GENE 151 151328 - 152092 882 254 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 4 252 2 248 248 164 34.0 1e-40 MAKKINLPKPLFSEKGKRAVLLLHAYSGSSNDVRMLSRRLEKENYTVYSPNFSGHGTLVP EDILDQTTEQWWQDTQEAVAFLRERGYQEIAIFGLSMGGIFSMHALTEQLTGLIGGGFFC SPIYPVENKVPENFVLYAENVMKIAEVPAEEQQSRLQSIEQRVKQQLGAIETIASQTADK LNKIHAPLFLAQAGKDEMIEPMGVYQTAQALTQARVTLQWYPNSGHVITVSGEHKQLEQD VVQFLATLPWNEEK >gi|308151759|gb|GL476263.1| GENE 152 152092 - 154461 1620 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 746 3 726 730 628 44 1e-179 MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE MRMRRGAISFEDREAKVLVDENGHPQDILLRTRGVGERLIESFMLAANETVARHYHDLKL PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN EALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA EEVAPVEGLKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ KNKKGKKKK >gi|308151759|gb|GL476263.1| GENE 153 154474 - 154938 608 154 aa, chain + ## HITS:1 COG:lin2542 KEGG:ns NR:ns ## COG: lin2542 COG0691 # Protein_GI_number: 16801604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Listeria innocua # 1 154 1 154 154 209 72.0 2e-54 MPKGEGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFL YNVHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKDGYAKVL IGLAKGKKQYDKREDLKRKEVDRQISRTLKNNRR >gi|308151759|gb|GL476263.1| GENE 154 155241 - 155960 647 239 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 225 52.0 6e-59 MEEKKLLFNIGPIWFDGTIVLMVLLTCIIVFAFVYACTRNMKLRPKGKQTVIEWLVDFIR GIITDNLPRKEVSNFHLMAFTLFMFVLVSNILGLVTKIVVGDDLSVWKSPTADPIVTLTL AMMMIVLTHFFGMKRFGFKGYLVNSYLRPVGFLLPVKLMEEFTNLLTLGLRLYGNIFAGE VLLGLIAGTVASVGLWVIPLAIPLEMIWVAFSIFIGCIQAFIFVTLSMVYMSHKIETEE >gi|308151759|gb|GL476263.1| GENE 155 156009 - 156230 434 73 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 4 69 1 66 70 60 59.0 1e-09 MEGLNFIAAAIAIFGSAIGAAIGNGQVISKTIESMTRQPEMSGQLRTTMFIGVALIEAVP ILGVVVSLLLLFR >gi|308151759|gb|GL476263.1| GENE 156 156368 - 156898 764 176 aa, chain + ## HITS:1 COG:L11208 KEGG:ns NR:ns ## COG: L11208 COG0711 # Protein_GI_number: 15673750 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Lactococcus lactis # 10 171 7 168 168 122 46.0 2e-28 MLLTTLVVGETAPSTTLGTMIVVSGAFLILMLLLKKYAWGAIVDILTQREEKIANDLDSA EQSRVAAAKMEKERQQQLLSSRSEAAEIIKNAKESGEQTRQKTLKETTAEVTRLREKART DISQEREEALSSVKNEVADLSLQIAAKILNKELTPDAHEALIDSYIESLGKANETR >gi|308151759|gb|GL476263.1| GENE 157 156885 - 157427 705 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 3 179 1 178 183 77 28.0 9e-15 MKLDKYTVGKRYGKALFELAVEKNQAEAIYQELLTLREVYHQVPGIGDILSDDRLEPYEK DSIMEKLVTGFSEMMQNFLRVVYEYRRMYDLLLMIDEYERRYDEHQGLILGSVTTAIPLS KEQHQAMEEKAAQLLGYEQAHLVNLIDPSIVGGVVIEANHQVIDGSIRKQLEHMQQKLLK >gi|308151759|gb|GL476263.1| GENE 158 157456 - 159012 2272 518 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 808 82.0 0 MAIKAEEISALIKEQIENYQQQLAVEEVGTVTYVGDGIARAHGLENAMSGELVEFSNGSY GMAQNLETNDVGIIILGDFETIREGDKVQRTGKIMEVPVGEALIGRVVNPLGQPLDGLGE IKTDKTRPVEATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI DTIINQKGQDVICIYVAIGQKESTVRNQVETLRKFGALDYTIVVTAGASQPAPLLYIAPY AGTAMGEEFMYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLSDELGGGSMTALPFVETQAGDISAYIPTNVISITDGQIFLESDLFYAGTRPAVDAG LSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEIL KQKLHAPLPVEKQVLILYALTHGFLDSVSVDKILHFEQDLFDYFDGKHADLLETIRTTKD LPDTDALDAAITEFSEMFAAANNSGDSAKEALEKIDNA >gi|308151759|gb|GL476263.1| GENE 159 159028 - 159936 1055 302 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 292 292 353 64.0 3e-97 MGASLNEIKQRIASTKKTSQITKAMQMVSAAKLTKSEGASKSFQEYSSKIRSVVTHLVAA QLSELRETEQSSLSEGNYHVMLAQRPVKKTGYIVITSDKGLVGGYNSSILKQTMSMIQED HDSNKEYALIAIGGTGADFFKARGIDVSYELRGLTDQPTFEEVRKIVTTATTMYQNEVFD ELYVCYNHHVNSLTSQFRVEKMLPITDLDPSEATSYEQEYLLEPSPEAILDQLLPQYAES LIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAA LE >gi|308151759|gb|GL476263.1| GENE 160 160010 - 161416 1930 468 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 796 87.0 0 MSSGKIVQVIGPVVDVEFSLDQSLPDINNALVVYKNGEAKQKVVLEVALELGDGVIRSIA MESTDGLQRGMEVIDTGKSISVPVGKDTLGRVFNVLGDTIDLEAPFPADAERSGIHKKAP AFDELSTSNEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS VFTGVGERTREGNDLYYEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI QAIYVPADDYTDPAPATAFAHLDATTNLERKLTEQGIYPAVDPLASSSSALAPEIVGEEH YEVATEVQHILQRYRELQDIIAILGMDELSDDEKVLVGRARRVQFFLSQNFNVAEQFTGQ PGSYVPVAETVRGFKEILEGKHDNLPEEAFRSVGKIEDAIEKAKQLNY >gi|308151759|gb|GL476263.1| GENE 161 161433 - 161852 667 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 138 149 60.0 1e-36 MDSLTVNVVTPNGLVYDHHAKIVVAKTTDGEIGILPKHAPIIVPLAIDEVRIKRTDSDTH VDWVAVNGGIMEVRDNVVSIIADSAERERDIDVPRAERAKQRAERLIEEAKAKDDRDQLR RATVALHRAINRINVSKHG >gi|308151759|gb|GL476263.1| GENE 162 162041 - 162277 146 78 aa, chain + ## HITS:1 COG:no KEGG:EF2606 NR:ns ## KEGG: EF2606 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 112 100.0 6e-24 MQYYGVDAIVRIVSHLMFIYISFWALQSLRIEQFFKTQFTPQIRMLMVFFAIAIGYTVSS FALELIALCRNLFIVYFP >gi|308151759|gb|GL476263.1| GENE 163 162380 - 163681 1769 433 aa, chain + ## HITS:1 COG:lin2670 KEGG:ns NR:ns ## COG: lin2670 COG0766 # Protein_GI_number: 16801731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 1 425 1 422 430 526 70.0 1e-149 MEQIIVHGGNTKLEGTVKIEGAKNAVLPILAATLLAEEGVTTLKNVPILSDVFTMNQVIK HLNVAIDFDEDANEVTIDATQPLGIEANYEYVSKMRASIVVMGPLLARNGHAKVAMPGGC AIGKRPIDLHLKGFQALGAKIIQKNGYIEAIADELIGNTIYLDFPSVGATQNIMMAAVRA KGTTIIENVAREPEIVDLANILNKMGANVIGAGTETMRIEGVDKLHAVEHSIVQDRIEAG TFMVAAAMTEGNVLIEEAISEHNRPLISKLTEMGAIIEEEENGIRVIGPKHLKPTDVKTM PHPGFPTDMQAQMTAIQMFAEGTSIVTETVFENRYQHLEEMRRMNADLKIDGNIAVINGG NELQGAAVEATDLRAAAALILVGLRANGITRVSNLKYLDRGYYEFHKKLQKLGANVERVN DEKIEEKQATTVI >gi|308151759|gb|GL476263.1| GENE 164 163695 - 163871 306 58 aa, chain + ## HITS:1 COG:no KEGG:EF2604 NR:ns ## KEGG: EF2604 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 83 98.0 3e-15 MSSFRYILVTLLKILVVISLAIILFVVGTMIGYGLIGNGNPMDVFDEKIWTHIMNFFK >gi|308151759|gb|GL476263.1| GENE 165 163999 - 164367 444 122 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 15 117 17 116 116 73 35.0 1e-13 MQATVTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTN YTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQLPKITIGTTIDYLVN GA >gi|308151759|gb|GL476263.1| GENE 166 164372 - 165541 1398 389 aa, chain + ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 11 379 10 378 388 351 51.0 2e-96 MDKKQTTDKRLSWFWRWFLNNQVVTALLIVLLVLLIILTFTKVSYLFKPVWQFFGVVGLP VIMAGILYYLLNPIVDYLEKKQISRVWSIIGLFILIVALLIWGGIVIVPKIREQSVSFVN HFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQGIGNFFG AVATIFVAIITMPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLKVLAEVNDQVSSYIRGQ LTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIVSGPALL IKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGIPVYAAA KVIITHIFEWYQIVSGLYDEDKPDQQEST >gi|308151759|gb|GL476263.1| GENE 167 165603 - 166229 913 208 aa, chain - ## HITS:1 COG:L186107 KEGG:ns NR:ns ## COG: L186107 COG1182 # Protein_GI_number: 15672363 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Lactococcus lactis # 1 208 1 201 201 193 51.0 2e-49 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLS AWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTI NVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGVDQVDGLFI EGIDHFPDRAEELLNTAMTKATEYGKTF >gi|308151759|gb|GL476263.1| GENE 168 166531 - 167373 843 280 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 274 285 244 45.0 1e-64 MRIEKVLNNNVVLSRNEQGEEIVYMGRGLAFQKKIGDTINPDYVEKEFVLKDSAMAGQFQ QLFEDVPTKEVEVVKQIVDLAETTLAIELSSNIYLTLTDHIHYALLRAKEGIDIPNPLVF ETRKFYPKEFEIAKQALAIIAEKLGVQFSENEAGFIAFHIVNAEQVNGNMEVTMEATKMV RDILTIISRYFGQVFDEDSLNYQRIVTHLQYFAQRYLKQEAHDEEDEFLFALVQGKYPKA FQAVQRINEYLLKSYDRPIDQAEMIYLTIHIQRVVNDKKA >gi|308151759|gb|GL476263.1| GENE 169 167536 - 169416 2211 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 100 455 2 355 368 292 46.0 1e-78 MSKNQEIAARVLKAVGGEGNVNSVVHCATRLRFKLKDENKADTAALNADPDVIQVVQSAG QYQVVIGSHVSDVYKDLMANSGLGNDSDNREKESGGNIFNRLIDIISSIFTPFLGAMAGA GVLKGFLTLAVTMGWLADTSGVYLVLFSIADGLFTFLPIMLAFTAAKKFNTNPFLAVALA MALVHPSITALAGKTISFAGLPVIIGPSGYTSSVLPIILAVFAQSYVERFFKKVIPSFLQ IICVPLAVFLIMAPVTFLAIGPIGTVIGDWLGQGYNAIYAFSPIIAGLLMGSLWQVLVMF GMHWGFVPIMMLNLTQGGDTMVPMLLPAVIAQGGAALAVFFLTKNVKLKGLALSSSITTI FGITEPTVYGVTLPLKKPFIAACIGGGIGGAFVAMNHVKNFTFGLVSMLSLPGFIPAETK DTAPMITGAIGAGIAFIIAFVLTFVLRFEDQPNPETETEKTATDKVVAPVKTNQEDKIIL ASPLQGEILPLEKVQDPVFASGALGKGVAIEPTEGKLYAPADGEITTLFPTGHAVGLTTT EGVELLMHIGMDTVELDGKGFELSVKQGDSVKKGDLLVTFDIAAIKEAGYPVVTPIVVTN TNDYLDVLDMNQTDVLHGEDFLAIIK >gi|308151759|gb|GL476263.1| GENE 170 169441 - 170886 1797 481 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 7 480 3 478 478 677 70.0 0 MTTTTKFPKGFLWGGATAANQLEGAYLADGKGLSVADAMPGGKQRFAILGDEAFDWTIDE TKYRYPNHTGIDHYDRFKEDIALFAKMGFKCYRFSIAWSRIFPQGDETQPNEAGLKFYDA VIDECLSYNIEPVITISHYEMPLHLAKEYGGWKNRQLVDFYERFAETVLTRYHQKVNYWM TFNEINSAFHFPALSQGLVKSNGANDYQNIFQAWHNQFVASSKAVKIGHELNPELQIGCM IIYATTYGIDSNPVNQVATMIENQEFNYYCTDVQVRGEYPAYAERMYQKYAVKDLVIEEG DLELLKEYPVDYIGFSYYMSTAVDVTGTTNDTADGNLLGGVKNPFLEASEWGWQIDPEGL RIALNELYNRYQKPLFIVENGLGAIDKVDENFYVADDYRIDYLRRHIEAMAEAVADGVDL MGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDEGNGTKNRYEKKSFNWYKQVIETNGQNL D >gi|308151759|gb|GL476263.1| GENE 171 171068 - 171637 704 189 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 9 157 8 162 207 84 36.0 1e-16 MIKQLQHPFFVIMGPSGSGKTAITSKVFPKNYKVISHTTRKKRLDEVDGVDYYFETKASF QALIETNQLVEYDFYHGNYYGVGVAAIVETTKEHPAYNALTFPGFQAVFERFGESVIPVF FDVSKENIYQRLKQRESDPKIIEERLNLYDQEILIKNQLEQYPNYQRIDANGPIKEVAGL LQECIKHYY >gi|308151759|gb|GL476263.1| GENE 172 171785 - 172462 769 225 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 123 1 121 189 74 36.0 1e-13 MPTNTFFHLPEEKQQRLLDAAQIEFSRHSLQEASIANIVKLAEIPRGSFYQYFENKEDLY FYYFATLRKNSERDLEKQIIAENGDLIEAMDVYFSKMIVEVLTGENASFYRNLFVNMDYR ASRRVTDNLATGEEEKNRKQNCHKHRGRKGHAAYAEHLYQIIDRSKLTIETPKEFTWFMQ TAMHAVFSTIVDGYRQQRENPAYDSTEAVKQLKMKLNWLKNGAYK >gi|308151759|gb|GL476263.1| GENE 173 172483 - 174210 183 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 559 2 231 245 75 25 3e-12 MIKLVKRMSLWSVFAAVLFMIVQIIADLYLPTLTSNIINDGVAKGDINYIWSTGVVMLGF SLISIVASIGNTFFATKESQSLGKKLRTDIYRKVENFSNNEFDKFGTASLITRTTNDVNQ IQMVMQMFLRLMINAPLTLIGASFMAYNKDPQLTKIFLYVLPIMAVLVGGIMFLAVPLFK SMQKKTDRLNLVFREGLTGVRVIRAFGKANYEEQRFDEANKDYTQTAIKVNTIVALMIPL MTLIMSGTNIAITWFGGHYIAEMQLEVGNLIAFMTYAMQILMSFMMLSMIFVMVPRAQAS ADRINEVLNTDSEIKDVPNPELLSLKGDKATLAFEHVNYRYQHAENLALEDIDFSAKSGE TVAIIGGTGSGKTTLVNLLPRFYDVESGKILLNGKNIKDTSQHNLREMIGFVPQKAVLFT GTIRENMQYGAPNATDEEIWQALEIAQAKAFVSEFAEGLDSHVEQGGGNFSGGQRQRLAI ARALVKPADVYVFDDSFSALDFKTDANLRKALKEQMTDAIVVLVAQRVSTVMEASTILVL DEGKLVGKGTHEELLANNQTYQEIVHSQLREEDLA >gi|308151759|gb|GL476263.1| GENE 174 174207 - 176075 215 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 399 604 40 251 329 87 31 7e-16 MSSRPKGGPMGGGPGRNIGAKGPKPKNFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQ IQTPKVLGQATTEIFKGVMKGAAEMKQGLKITSFPIDFDKIGQILLIVIAMYLISAVFNF LQQVIMTRVSQRTVYELRQELEAKMNKVPISYYDTHSNGDIMSRAINDMDNIASTLQQNL TQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLL NNQVEETYGGHVVVKSFNHEESDQEVFEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGY VFVAVLGGVKVANGMMDLGDVQAFLQYTNQFSQPITQIANLMNTIQATVASAERVFEVLD EEEMVDEPSGIPVETDSPYRVSFEHVVFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGK TTLINLLERFYDISSGSIKYDGVDTRDLSREELRAHFSMVLQDTWLFTGSIYDNIHYGNE QASEEEVIRAAKAAHVDDFVRKLPEGYQTILNEEASNISQGQRQLITIARAFLANPDVLI LDEATSSVDTRTEILIQAAMNRLLENRTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHD ELMAKNGFYADLYNSQFSEEVA >gi|308151759|gb|GL476263.1| GENE 175 176279 - 177106 984 275 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 5 243 3 255 279 72 22.0 7e-13 MTEFQLEKAATLKTIAIRAKKVGEMVDFYKKVMGFVLKSEENNLSIWGTREAGTQLLILE ETRKAEDFHNEEKQMAYFSIKVPTEKEFLQIAQRVLEQDYPIDESFQIGTRQSMFITDLE GNQFEIFHDEATANSTSEKQPIVLKDLISEDLEPHQGLAAGSYLAHVQLKTNNQKEIKAY YEEVLGLKRNEKDQFVLEDGKATIGFQKPETSEVDQLPDPHLGLDFFTIKLSDQEHILAM EQQLTAKNQEFFIDQKKAIVTVFDPIGLEWWFVLK >gi|308151759|gb|GL476263.1| GENE 176 177236 - 178279 985 347 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 330 11 308 328 221 41.0 1e-57 MYEKTKWKIQKMMKKGVFSGASFCFIEGEKEESNCWGLAQVKPTKEQLTSAMLFDVASLT KVVGTTTVILQLVEEGKIILDQSLQTYYPSFQDSNITIRHLLTHTADLQGYIPNRDQLNA QELKDAYNHSFHAGKAIGKKVVYTDAGTILLGFMLEEMFQQSMIEILSERVLLPLGMNES TFLPKNPLNCVPTELHEQRGLIRGATHDPKAFVLREHAGNAGLFSNVYDLTKFVRMYLNR GSYHNLQFLKKETIDLLLVNQVPAADKLRSLGWDFKYDVATQRPLLFHTGYTGTFLLIDV RQQSAFIFLSNRVHPEDHRNTYIEERDQLLATYLKEKSSVSDEMTSF >gi|308151759|gb|GL476263.1| GENE 177 178321 - 179292 1184 323 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 321 1 315 315 408 63.0 1e-114 MQEPLFLQPVFQEKIWGGNRLHTLFGFDLPSDKIGEDWAISAHPHGVSTVLNGEFKGKKL DELWADHQELFGHADGAVFPLLTKILDAEDDLSVQVHPDDAYGQKHEGELGKTECWYIID AEPGAEIIYGHHAKTKEELAEMIEEGRWDDLLRKVPVKKGDFYYVPSGTIHAIGSGILIL ETQQSSDTTYRVYDYDRTDDQGKTRELHIQQSIDVTTVPAKDPDLSIQQENQGQSSIVTY VKTDFFNVYEWRVSGILKVKKQAPYTLATVIEGVGRLITEDAAKADVATFDLKKGDSFIF PTDIPSWRFEGDLTIIASEPGSR >gi|308151759|gb|GL476263.1| GENE 178 179348 - 179893 483 181 aa, chain - ## HITS:1 COG:no KEGG:EF2588 NR:ns ## KEGG: EF2588 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 181 1 181 181 247 98.0 1e-64 MKKITPRIITIIAFSVALNYLGSTVALLLRLPIYLDSVGTIFTGALLGPLFGALTGILTS LLTGLTTDIFSLYYSPVQLCTGILAGLLLHQQLKVTKLPFKTLWLTIPGTVISSLITVCL FGGITSAGSSIIVQFLYGLGLNQLASVLLVQLITDYGDRLLSVIIVTAVIAALPKRSFIT K >gi|308151759|gb|GL476263.1| GENE 179 179896 - 180870 854 324 aa, chain - ## HITS:1 COG:PA0143 KEGG:ns NR:ns ## COG: PA0143 COG1957 # Protein_GI_number: 15595341 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Pseudomonas aeruginosa # 2 299 19 318 329 192 38.0 1e-48 MQKVIVDCDPGIDDTLALLYALASPELDVQAITVVCGNVPVEIGVENVFKCLEKVNRLDI PVYQGAASPLKRPFVSAQDTHGMDGLGETYFPRTSKIQAQALSAADYLAQTFQQATDCSI IALGPLTNIALALKKEPLLGRNLQRFVSMGGTFKSHGNCSPVAEFNYWCDPDAAAWVFEK LGTKIEMVGLDVTREIVFTPTILNYCQRLNPKMGNYLAEITQFYFDFHWKYERILGCVIN DPLAVAYFIDPALCQGFSSYGQIVPDGIAMGQSMIDQYHFQQQPANCHVLTTVDSQQFFV KFLSILLNVQIDEIERDFKNLRMG >gi|308151759|gb|GL476263.1| GENE 180 181107 - 181796 954 229 aa, chain - ## HITS:1 COG:SP1590 KEGG:ns NR:ns ## COG: SP1590 COG3442 # Protein_GI_number: 15901432 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 224 16 236 260 285 63.0 4e-77 MSKELVVCHLYGNLLNTYGDNGNLLMLKYLTEKMGVTFRSEIISIYEPFDPEKYDLVFVG GGQDFEQLIISEDIQNKKEALTSYIENDGVLLAICGGYQLLGHYYVGAQGEKIKGIGALD HYTLSQDNNRFIGDIEIYNEEFDETYYGFENHNGMTFLGEGERPLGTVKQGKGNNGQDNG EGVVYKNVFGSYFHGPILARNKNLGIRLIRTALEKKYGEPIAIPETLYK >gi|308151759|gb|GL476263.1| GENE 181 181789 - 183141 1600 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 445 1 445 449 573 62.0 1e-163 MGIRSHLAIAAGKTSQWVLQTFFKGGSSYPGKLALKIDPKILDTLAKDYEIVVVTGTNGK TLTTALTVNILRQEFDEVLTNPTGANMEQGIVSTFLNAKAKKGQKKFAVLEIDEASLSRV TKYIQPKLFVFTNIFRDQMDRYGEIYTTYRLIMEGAAAAPEATILCNGDSPIFNSKETVN PRKYYGFNHLPPKEQLAHYNTDGVLCPKCNHILHYKMITYANLGDYYCPNCGFKRPELDV QLTEMVRMDNTSADFVIDGEEYGIAVGGMYNVYNALAATSVAEYYQVAPDKIRAGLAYDE KVFGRQETIKVGDKECTLVLVKNPVGLNQVIDMMGLAPYSFSLVSLLNANYADGIDVSWI WDGNHEAFADMDIPKVIAGGDRHEDMALRLKVAGIPEEKLLEIADLEQVISEIKTLPTDH VYILATYTAVLQLRKSLTAQGYIQGGMNGV >gi|308151759|gb|GL476263.1| GENE 182 183347 - 183985 606 212 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 209 37 230 240 79 29.0 4e-15 MLSDEKLTFLTQIAKGLAGQFGENCEVVIHQINEDNINNSIVSIENGHVSSRHLGDGPSQ VVLEALKKDPSELNDHINYLTRTHDGRILKSSTMYFKDENGQLDGIFAINYDITTLIAAE SNLKSLISTAEPEEDKDPDYIPQDVNELLDDLIHESVKLVGKPVPLMTKDDKIKCIQFLN NKGAFLVTKSGDKVSNFFNISKYTLYSYIDAK >gi|308151759|gb|GL476263.1| GENE 183 184388 - 185722 1752 444 aa, chain + ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 24 443 45 461 464 248 34.0 1e-65 MLLIGNGRLITQDAQNHFFENGCVAIDGQVVKQVGTTEELKQAYPEATFIDAKGGVIMPG FINMHNHIYSTFARGLSLTNYHPKNFMDILVDQWWRIDRALTLEDTYQSGKVAYLDSIRN GVTTVFDHHASYGEITGSLTQLSNAADELGIRTCLCYEVSDRDGEQKMREAVQENAAFIK ASSLRKDDMQKAMMGMHAAFTLSDASLELCAANTPDGIGYHIHIAEDLADVHDSLKKYGK PIVNRLFDLGILGKQTMAGHCIHIGPHEMELLRDTDTMVVTNPESNMGNAVGCPPAMRMF NEYGILMGLGTDGYTNDVTESYKVGNVIHKHHLADPNAAWAEIPTMLFDNNPQMANRYFK TKLGVLEPNAAADVIIVDYHGPTPMTKENYNMHILFGMNGGMVTDTVINGEIRMRNREVQ GIDEEKVWHDAQTQAQSFWKRVNQ >gi|308151759|gb|GL476263.1| GENE 184 185753 - 188758 2989 1001 aa, chain + ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 439 954 1 530 582 394 42.0 1e-109 MSDIMHPISIEALLNWIFSEYQQDGTIFGIRKFYHADPTKTISLFGEKMETPCGPAAGPH TQLAQNIIAAYLTGSRFFEVKTVQILDGEDLPVSKPCIAAADECYNVEWSTELRVPQAYD EYVKAWFVLKLLSKEFELGDPNGFIFNMSVGYDLAGIQSPKIDRYINEMQNAEGTPIWAE CQAAAKKYLSYLKKVDDSYIEAISPKVCHSITLSTLHGCPSDEIERIAAYLLSEKGLHSF IKCNPTMLGYEYARQTMDELGFDYMVFDDHHFKEDLQFEEAVPMLQRLQLLANSKNLSFG VKITNTFPVTIAANELPGDEMYMSGRSLFPLSISLAQKLSEAFDGKLQISYSGGADIFNS KEIFDAGIWPITMATTLLKPGGYQRMNQVANVLSAAEYPQMVHVNLDKLAQVVEKAKTQA RYQKSIKLPESTKLRKTVPLTDCYIAPCRSDGGCPINQDIPAYLRYVSEGNYLKALQVIV DKNPLPFITGTICAHPCMTKCTRQFYEESIHIREVKLEAAEHAYDELLTTLEKPQPKENA PKTAVVGGGPAGISAGYLLAREGMPVTVFEKSETIGGVCSQIVPEFRISMESVQKDVQLA EFMGAEFRTGQEAPSLAELKNQGYTNVIYAIGAWKHGVLRLESGRALNSLEFLKANRENP TINPYGEQIVVVGGGNTAMDCARAATTLPGVKKVSVVYRRNKRNMPADEEELYLALEDGV DFLELLSPIKHENQQLTCEKMVLGERDASGRRRPIGTGEMIDIPADTVIAAVGEKVDTEF YQALGIHTDNYGKVVSNQETLETNIPGVYVIGDANLGPATIVEAIADATKAANNICLVHN HHYEKDNLNSDVAFVRNKRGILVTDEMSCSQASRCLECSTICESCMDVCPNRANIVVYVE GKPQIVHVDRMCNECGNCETFCPYASAPYKDKFTLFNSESDFYDSTNSGFYVQNPVDKIC LLRLWGTVSTIQLTDQGLDVPEDLIALMVTMIEEYAYCMQA >gi|308151759|gb|GL476263.1| GENE 185 188788 - 189831 600 347 aa, chain + ## HITS:1 COG:SMc01821 KEGG:ns NR:ns ## COG: SMc01821 COG0044 # Protein_GI_number: 15966207 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Sinorhizobium meliloti # 1 338 1 335 484 226 37.0 5e-59 MSILLKGGTVVSAYNRRQLDIRIDGEQIVEMGANLPVENSQIEDVTGCYVLPGFIDAHTH LELNNGKGSLSTADNFTTGSQAAVAKGTTTVIDMATPNKGGSLKDCLATWNQLAEGKSSC DYTYHMSMIEWKPTIAAEIQEMIAAGITSFKMYMAYDNLRTTDAEIFEAMKEIKKVNGML GVHCENGDLVDELIQSYVSQGKLTPHYHPLSRPAAVEAEAVARYLMIAEMADLPVNIVHL STKRSLEAVERARQRGQSVYVETCPQYLLLDDHLYDAPNFEAAKYVCSPPLRKREDQQLC GKGLKRGQSIQYRQITAVLIFTDKKQLAKMILVKFPMGCQVLKRDQN >gi|308151759|gb|GL476263.1| GENE 186 189684 - 190160 496 158 aa, chain + ## HITS:1 COG:mll1629 KEGG:ns NR:ns ## COG: mll1629 COG0044 # Protein_GI_number: 13471607 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Mesorhizobium loti # 1 156 297 452 483 135 41.0 4e-32 MWQGIKEGAINTISTDHCSFNFHGQKTVGEDDFSKISNGMPGVETRPELIYTEGVAKGRI TLESMVALLSENIAKQFSMYPQKGVVQEGSDADLVVWDPRTTGVIAARTQLQNVDYTPYE GFETQGQARMVYLRGQKVAEAGQVILANQGKFVFRKAT >gi|308151759|gb|GL476263.1| GENE 187 190184 - 191377 1272 397 aa, chain + ## HITS:1 COG:STM1002 KEGG:ns NR:ns ## COG: STM1002 COG1171 # Protein_GI_number: 16764362 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Salmonella typhimurium LT2 # 19 396 22 399 404 415 52.0 1e-115 MEKIKWTANEMPKTEDKYLPLMSKEKIEKALAFHKSFPQYSETPLAELNHMAAYLGLNDF FVKDESYRFGLNAFKVLGGSFAMANYIAEKLKKDVSELTYDELTSDQLRSAFGQATFFTA TDGNHGRGVAWAANKLGQKSVVLMPKGSTQTRKENIEKEGATVTIEEVNYDECVRMANKM AEETENGVMVQDTAWDGYEKIPTWIMQGYGTMALEASQQLRKFGSERPSHVFVQAGVGSL AGAVIGYFANAFPENPPIMVVVEAQAADCLYQSAIKKDGEIRFVDGDLQTIMAGLACGEP NTISFDILKNHTSFFVSAPDWVSEKGMRMLGAPLKGDPQVVSGESGAVAIGLVATVMQDP DYQELREALQLDETSNVLMFSTEGDTDPDNYKKILWR >gi|308151759|gb|GL476263.1| GENE 188 191383 - 192693 1629 436 aa, chain + ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 3 431 7 396 403 525 59.0 1e-148 MDFNAVNAAAEGYREDMVKFLRDLVKIPGESAEEGNKIARAKAEMEKLGFDKIDIDPQGN LLGYMGSGEKLIAFDGHMDTVGIGEMSNWKFDPYDGYETETEIGGRGTSDQEGGIVSAIY GAKIMKDLGLLSEKYTSLVTVTVQEEDCDGLCWQYIIKEDGIRPEFVVSTEPTDGGIYRG QRGRMEIKVDVKGVSCHGSAPERGDNAIYKMADILQDVRALNNNGDTESTAIRGLVRMLD PKYNPEWQEARFLGRGTVTVSQIFHSSPSRCAVADGCTVSLDRRMTAGETWESCLEEIRN LPAVKKYGDDVTVSMYNYDRPSYTDLTYEIECYFPTWVIPENHDVTKALMETHKNLYGET RKGSVETVEMREERPLLDKWTFSTNGVSIMGRNGIPCIGFGPGAEAQAHAPNEKTWKDDL VRCAAVYAALPTVYCG >gi|308151759|gb|GL476263.1| GENE 189 192732 - 193925 1592 397 aa, chain + ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 394 2 394 396 543 66.0 1e-154 METFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDS GLGISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIG IRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEF GGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVA KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQEL LSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKE ASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK >gi|308151759|gb|GL476263.1| GENE 190 194166 - 195110 1178 314 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 309 1 308 310 355 62.0 9e-98 MGKRVVVALGGNALGNNLTEQMTAVKQTSKAIADLIEAGYEVILSHGNGPQVGMIQLAME EFSFNNPQYPVVPLSMCVAMSQSYIGYDLENALQEELRQRNISKAVTTIVTQVVVDENDP AFKKPTKPIGRFMTKEEAEQLVKEKNIQVMEDAGRGYRQVVASPKPKNIVELLTIQTLVD AGQTVIAGGGGGIPVIQEGNRLKGVNTVIDKDFCSERLAEQVDADLLVILTAVEKVCINF GKENQEALGNVSTEKMKQYAQEGQFAPGSMLPKVEAAIKFAESKPGRKTLITLLEKAKEG LSGKTGTLIENKES >gi|308151759|gb|GL476263.1| GENE 191 195125 - 195505 448 126 aa, chain + ## HITS:1 COG:slr0709 KEGG:ns NR:ns ## COG: slr0709 COG0251 # Protein_GI_number: 16331956 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 1 124 1 127 130 133 55.0 7e-32 MTNKMINSAQAPAAVGPYSHSVLAGNTLYISGQLGLDPQSGEMKTTVEEQAKQAFINLGS ILKEVEMTYDNVVKTTVFLQHMSDFSKINEIYGNYFSEVLPARSCVEVAKLPKDGLFEIE AVAVKG >gi|308151759|gb|GL476263.1| GENE 192 195599 - 196918 404 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 439 6 427 447 160 28 8e-38 MNEKKEQALFEYDAKLSISEAIPMGLQHVVAAVVGIVTPGIMIAKVCQLSPSDTTILIQT SLIFSAVATLIQLFPIFGKVGSRLPVMMGASFAYVPILMAIGADFGIAAIFGSQLVGSIL VIIVGLFIKKIRVLFPPLVTGTVILSIGLSLFPVAIKYMAGGAGSADFGSARNWLVALLT FAIVFYFNYFAKGFLKLSAILNGMVIGYLISLALGMVSFEPVQNAKIVQVITPFHFGLDF QLVPIFTLVVMFIVDAVQAIGQFTATTVGAMDRDATDEELSGGIMGSGFTNFIGSLFGSI PVATFGQNVGLVTVTKVINKYVLVFASVILLIAGFVPKVAALLTTIPYAVIGGATISVFA SISMTGIRMIASQEMTPRNTGVVGTALAFGIGVTLSTGSLAGFPTWVTTIFGNSEVILTT LVAVLLNVILKPKKRVALE >gi|308151759|gb|GL476263.1| GENE 193 197012 - 197371 359 119 aa, chain + ## HITS:1 COG:AGc4647 KEGG:ns NR:ns ## COG: AGc4647 COG2005 # Protein_GI_number: 15889822 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 107 22 109 131 61 37.0 3e-10 MFTYSLNLKLKTDRNFFGPGVVEVLQKIQQTGSLNLAAKEMKMSYNKAWRIVRVAEEELS FPLIIKSVGGCNGGGSIVTDQGKELIDQYLLFEKKVYQQVEACFEEIFKEQDVVSEELK >gi|308151759|gb|GL476263.1| GENE 194 197422 - 198375 870 317 aa, chain + ## HITS:1 COG:CC2617 KEGG:ns NR:ns ## COG: CC2617 COG1975 # Protein_GI_number: 16126854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Caulobacter vibrioides # 2 315 21 323 338 102 28.0 1e-21 MLLTIGTSSGSTPRSQGARMLVSAEGRIAGTVGGGAVEFQAEQVAKKLLIEKENAQRQFI LAPNNIADLGMVCGGNVTIFFHYLSWETSFLKELCESIETHFQNNQQGWLMTELDQNNLG KVSFYSETGELIGSTSWEGELSLLPKGIHCEQKEEITFLTEAILQVGKVYIFGSGHVARA LVLILNYLSFYCVVVDDRPEFLTAQAFPQAEELRVIPLENLAAFIEITADDYGIVITRGH NFDFIVAKQLLETPAKYIGVMGSKHKIASQVRRLKEVGYTMNEIERIFMPIGLDIAAETP EELAISIAGELIQQRYQ >gi|308151759|gb|GL476263.1| GENE 195 198496 - 200181 1551 561 aa, chain + ## HITS:1 COG:BH0748 KEGG:ns NR:ns ## COG: BH0748 COG1529 # Protein_GI_number: 15613311 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Bacillus halodurans # 169 554 15 397 760 285 41.0 2e-76 MYSIIVNGQSETCETNKKLMDFLREDLGLTGTKDGCNQGSCGACTVLVNGKASKACLFTL EKLAGKEVTTIEGLSQRQKDVYAYAFAKTGAVQCGYCIPGMVISAQGLLNKKPEPTKEDI QKAIRGNICRCTGYVKIIEAIQLAAKMFCEEMSIPEEHSNGKLGEDFQRVDAVEKTLGTG IYVDDIDIEGMLHASALRSAYPRAKVLSIDSTQALAHPDCVAVFTAKDVPGNNKIGHLEF ISDWDVMIPEGEITRYVGDAVALVVSKRKETLPEIKNLVEVDYEEMIPLTSCEAALAEGA PAIHEKGNILSHEHLVRGNAEEVLANSAFVVSEHYSVPINEHAFMEPECAIAQPEGEGIL LFSAGQSIYDEQREVARMLGLDKEKIHVQSKLVGGGFGGKEDMSVQHHASLAAWLLKKPV KVLLSREESLMVHPKRHGMEMDFTTGCDEEGNLTAMKAVIYADTGAYASLGGPVLQRACT HAAGPYKYQTIDVEGFAVYTNNPPAGAFRGFGVCQTAFAIESNLNLLAEKVGLSPWEIRF KNSVAPGDTLPNGQLVSKNAA >gi|308151759|gb|GL476263.1| GENE 196 200191 - 201069 1002 292 aa, chain + ## HITS:1 COG:mll4880 KEGG:ns NR:ns ## COG: mll4880 COG1529 # Protein_GI_number: 13474083 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Mesorhizobium loti # 30 285 470 755 774 112 34.0 7e-25 MLAVKDVYEQAEVAGISSFFKNSGVGVGLPDTGRCIISVEEGKIHVRTSAACIGQGMATV TTQIACETLNLPPEMIVAEAPDTRRTPNSGTTTASRQSLFTGEATRRAAMQLRYELDMGR ALSDLEGEEFYGEYSAKTDPLINDKKSPVSHAGYGYAAEVAILDDKGKVAKFVAAYDMGQ VVNPRAAEGQIEGGIAMGMGYALTEKFALEEGYVKAKYATLGLVNATQVPPIETILVHAD NLHEGLAYGIKGVSELATIPTAPALAGAYFALDGQLRPSLPLENTPYQKKKR >gi|308151759|gb|GL476263.1| GENE 197 201083 - 201664 758 193 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 8 186 1 189 205 87 32.0 1e-17 MSLVSVIILASGNSQRMGQNKLFLKYQGKTFLEHTLTLVNQLDVLERILVVSPENQPAFP LPKNIQLILNHQWQEGQSSSIRLGTEQARGAGYLYLPSDQPLLTPKMLQPVLDKCQRNKI VVPLQKDGCPSSPVLFGNQFRQELLTLTGETGGRMIYERFPEAVQMLRIATPGRLKDIDT PEEYRKLIQETNS >gi|308151759|gb|GL476263.1| GENE 198 201678 - 202826 1079 382 aa, chain + ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 4 380 1 374 379 240 38.0 3e-63 MKDLVYLNYAATSYKKFPATIEALTAYLAENQFMNYGRNAPLLREELPLLETRQLLADFF QAPSAAQITFTNNATTSLNLALAGLLQPGDHVITTMLEHHAVARPLHLLEKERGISVTYV ACQKTGLLDVEDIQRAWRTNTKALVMTHASNVLGTILPIEECFQWAQQKGLLTILDAAQT AGFLPIKMTQMAIDVLAFTGHKSLYGLAGIGGLAFSERGAEAVKPLMTGGTGSHSNSFDQ PSFLPDKFEAGTLNSLGILSLNSSVKELNKIGLAAIQKHERTLMQNFLNGLSGLPVTILG TKDVAQTVPVVSITLWNQEETVVAQQLAEQYGIMTRAGLHCAPLAHETAGTLATGTLRFS FGWQTTPEEITWTIHALQELLI >gi|308151759|gb|GL476263.1| GENE 199 202842 - 203864 1031 340 aa, chain + ## HITS:1 COG:SMa0028 KEGG:ns NR:ns ## COG: SMa0028 COG0709 # Protein_GI_number: 16262467 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Sinorhizobium meliloti # 10 339 15 348 349 214 41.0 2e-55 MDFLSQCTSGGCGAKIESRVLNQLLQHLPETPANERLLVGFEHADDAAVYQITSEKALIS TVDFFSPMVNDPLSFGKIAVANALSDVYAMGGTVLYALNLVCFPQKMSKEWLEQMLLGGS LKLKEAGALLAGGHSIYDHEPKYGLAVTGEVHPENLWHNNTPQVGDVLILTKALGVGIIQ AAVRGQLAKQTEQKIAQDSMERLNKYAAANARSYAVHACTDVTGFGLLIHAKEMADNQVT LLIDTEALPTITGALAYAAECLVTAAGQRNRQTIGTTIDYSKISMEMQELLFDPQTSGGL LISVAADEAAACLAAIQKEDPVAKIIGEVLPKEQQAVVLL >gi|308151759|gb|GL476263.1| GENE 200 203880 - 204467 671 195 aa, chain + ## HITS:1 COG:no KEGG:EF2566 NR:ns ## KEGG: EF2566 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 195 1 195 195 322 99.0 4e-87 MKLVDALGKPCPIPVIETKKALAELGLAGGTIEVLVDNEVAVENLKKLATKKQATLTAKQ IEATVFSVKITVPEEATQQTSQSATDLVITIGSDQLGTGDEQLGRLLMKSYLQSLSEAET VPTQLLFFNRGAFLTNQAANTLADLQQLAEKGTTIQTCGACLDFYHLTDTLAIGSITNMY EIVETMNQAAKVITL >gi|308151759|gb|GL476263.1| GENE 201 204487 - 204744 186 85 aa, chain + ## HITS:1 COG:no KEGG:EF2565 NR:ns ## KEGG: EF2565 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 172 98.0 4e-42 MEYLLTFPNTHYAVQAEQVLLTRKVAVRVFTLPPSLTDGCGIGLLINEAEITHSVCFLEE AKVRVASIFSVKNDLGERRYQLWSP >gi|308151759|gb|GL476263.1| GENE 202 204732 - 205487 491 251 aa, chain + ## HITS:1 COG:no KEGG:EF2564 NR:ns ## KEGG: EF2564 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 251 251 481 98.0 1e-134 MESLKKCFDLQGKEIVSIVGSGGKTSLMWALAKTYRKEAVLVSTTTKIGFPQRQLYDYFY TNHFEKITPNICGITLAGTAINNQTKLTMPAMTSLQILFQHFTKVFLEADGSKQRPLKGW SSYEPVILKETTTTIGVLPISVIGQKIDETTIHRLPLFLELTDAQLQEPITETLLAQLIA HPKGLFKESQGQRILCLNQTHTRREFVQAMNVCLQLPKSCFEKLDKIIACNMELEKGLIL WEKSVKTSKKN >gi|308151759|gb|GL476263.1| GENE 203 205451 - 206281 868 276 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 11 269 269 526 541 234 47.0 1e-61 MGEISQNIQEKLVIVRGGGDLATGVIQKLWHVGFKILVLETECPLAIRRTVSVCDAIFQK EQRVEDLVAVRITSLKDCAKCWQQNKLPVFVDQTASAIQQLKPLIVIDAILAKKNLGTHR GMAPITIALGPGFSAPQDVDVVIETMRGHRLGRLYFEGTALPNTGIPGEIGGKSAERVVH APASGQVTHLKNIGDLVLKGEALFLIDQVPVYSPLTGTLRGLISEKVTCYQGLKCADVDP RPVEKVDCLTISDKARALGGAVLEAIFMIGRSKNVL >gi|308151759|gb|GL476263.1| GENE 204 206523 - 206981 608 152 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 148 149 126 50.0 1e-29 MALVKIVYASMTGNTEEISEILEEQFQEAGVEVEREECSEVDVDFFDDADACIIATYTYG DGELPFEFEDFFDELTEKDLAGKPFGVVGSGDREYGEFFCKSAHDFVGAFEKAGAKKVAE TVEIENNAEEEDIEMLKTFVKSVATTLSDSVA >gi|308151759|gb|GL476263.1| GENE 205 207037 - 207876 961 279 aa, chain + ## HITS:1 COG:TM1639 KEGG:ns NR:ns ## COG: TM1639 COG0543 # Protein_GI_number: 15644387 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Thermotoga maritima # 4 276 9 280 282 325 53.0 5e-89 MFNILQSTQLSSNTFDFWLEAPRIATHAQAGQFVILRIDEKGERIPLTIAETNPQAGGIR IIFQVIGKTTAALSQLKTSDSLLDITGPLGMPTEVKQYGTVMVVGGGVGIAAIYPIIKAL KEAGNRVITILGARTAELVLLQEECRRYSDELIITTDDGSLGKKGLVTEAMEEVIARESV ACSWAIGPSIMMKFCTLTAEKHQLPIYVSLNPIMIDGTGMCGDCRVTVDGTMKFACVDGP EFKGNEVNWDEFINRMKQYQEEEAVCFTDCLKEQVEKNG >gi|308151759|gb|GL476263.1| GENE 206 207869 - 209287 1508 472 aa, chain + ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 8 461 5 459 468 586 63.0 1e-167 MARKSRIKTPIAEQVPTIRKNNFEEVCLGYTLAEGQEEAIRCLQCKNAPCIAKCPVMIDI PGFILAIREGNMEQATDILSKYTNLPAICGRVCPQEKQCEQVCKLGKAKNFEPVAIGKLE RLVADWALENHMFPKKTAEPTKGKIAVVGSGPSGLTVAGDLAKLGYEVIIFEALHEAGGV LTYGIPEFRLPKKIVKQEIASIEALGVTIETNVVVGKTITMEEIMSEFDACYLSVGAGAP NFMGIPGTSLNGVYSSSEFLTRINLMHSYEFPEYDTPIKRAKNVVVIGGGNVAMDAARSA KRLGAENVNIVYRRSLEELPARIEEYHHSLEEGINYYWLTNPIAYLDDQQGNLAGVECVK MVLGEPDVSGRRRPEPVPDSTFTIPADAVIEAIGQGANRVLLSTYPEIELNQWGYIQADP KTGATSIPGVFAGGDIVTGAATVILAMGAGKIAANAIDQYVKTQKTTVTSNV >gi|308151759|gb|GL476263.1| GENE 207 209308 - 212841 3802 1177 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 2 411 4 411 414 600 70.0 1e-171 MKKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWAESGLKNIYGQKVQVIEMQS EAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVAARAVTTSALSI FGDHGDVMATRQTGFCMLAESSVQEVMDLSAVAHLASLEGSLPFVNFFDGFRTSHELQKI EVIDYDDLKEMVNQEAVTRFRMGGMNPNHPTVSGTAQNPDIHFQQRETVNKNYEEMPKIV QKYMEKINHLRGTTYDLTDYYGVEDATEVIISMGSASPVIKQTVDYLNQQGRKVGFINIH LYRPFPTENLLEKLPATVEKVAVLDRTKESGAEGEPLLLDVQSALYQHENRPIVIGGRYG LGSKDVAPNQIKAIYDHLLLPFKELKQRFTVGIVDDVTYQSLPEEPTLDLTPDTTFQAKF WGFGSDGTVGANKQAIKIIGDHTDLYAQAYFGYDSKKSGGLTVSHLRFGKEPITSTYLIE QADFIACHNASYLHKYDLLKGLKDGGTFLLNTIWDQEKVHRLLPAKLKKYIGEHQIKFYI INAVELARKVGLGRRINTVMSTAFFEVTNILTKEQYLPLLKEEVKKTYGKKSMEIVEKNY QAIDATFESLQEIVVPEDWATIVLEPENQESEVPAFVTNILEPINRQEGDQLTVSDLIEN GMKGGAIPMGTAAYEKRGIALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAP AGFAMREMRGTDGLMYRIQVSLEDCTGCGLCVQACPVKDKAILMKPYETQKEQAMNWAFA MTLKQKANPVKKLSVKGSQFNQPLMEFSGACEGCGETPYIKLLTQLFGDRMMIANATGCS SIWGGSSPVTPYTTNECGQGPAWSNSLFEDNAEYGYGMYIANRTKRQHLASLVEESLAKN VGSDSLQALLNDWLEHMAEGEGTQQRATKLAAALSEEADEDPLLTKIYEQKDLLVKTSQW IVGGDGWAYDIGFSGIDHVLASGEDVNIFVMDNEVYANTGGQTSKATPASAIAKFSAGGK HTSKKDLGMMAITYGNVYVAQVALGANSMQTIKAIDEAERYPGPSIIIGYTPCINHGVKG GMVRTLDQAKEAVESGYWPLYRYNPELVKKGKDPMVIDYKKTDFDKMRDFLEKQTRYSAL HTIKQNQEVVEHLLDKTKEDAIERSESYNKLVTHMKK >gi|308151759|gb|GL476263.1| GENE 208 212878 - 214293 1176 471 aa, chain - ## HITS:1 COG:lin0992 KEGG:ns NR:ns ## COG: lin0992 COG0168 # Protein_GI_number: 16800061 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Listeria innocua # 23 471 6 445 445 330 44.0 3e-90 MNHTRLLWLAQRKSDRFIRKNFSSIQIIVAYYILMTVISYLLFCLPIFREPDSHVPFIDL FFLAISTVSVTGLTTVDINSVFNDRGIVLLEVLFQVGGLGIMMISTVFFILSKRRITLKQ RQLIMTDMNQPRLSGIVRLIRTTFLILIWFQVIFGSLFSLYFYISGYYTNWRDAIFYGFY QAISAVTNSGFDISGDSIIPFAHDYLFLLAIMFLIFIGGIGFPVLLEIHEWLHFKKKNFR KKKRGLPFRFSLFSKIALLAFIVLFIGGTILIYLLEKDHLFLTMNESGRWVSSMFYSMTT RNAGLQINDLGDFQITTLIIFSVLMFIGCSPSSVGGGVRTTTVAIIGLYLLAFLKSEDDI SVFSRKIDDDDVKKSIVVFMLSLIMCFFAVVFLSATENLPLISIIVEVASAFGTTGLSLG ITDDLTTVGKLMIALLMFIGRIGMLYTLMIFVPKETRDLGYEYPSEKIIIG >gi|308151759|gb|GL476263.1| GENE 209 214663 - 216180 2241 505 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 504 9 506 506 612 67.0 1e-175 MKKVLMGVLSLGLLLGAATGCTSDQEKAAGKTKASSEKTEATSGASANGYTDPSELKDSY DVVIVGSGGAGMTAALQAKEAGMNPVILEKMPVAGGNTIKSSSGMNASQTKFQEKEGIKD SNDKFFEETLKGGKGTNDQELLRYFVDHSAEAIDWLDTKGITLSNLTITGGMSEKRTHRP ADGSAIGGYLVDGLVRNVREEKIPLFVDADVTDLVEENGQIDGVKVKMKDDKEKTVKAKA VVVTTGGFGANEKLITQYKPELKNYVTTNQEGTTGDGIQMIQKVGGALVDMKEIQIHPTV QQSDAFLIGEAVRGEGAILASQKGERFVNELDTRDKVSAAINALPEKSAYLVFDQGVRDR AKAIDFYDQKGFVEKGETIEELAEKIGMPADTLKATIDTWNQDVNAKDDKQFGRTTGMEA DLSTAPYYAIKIAPGIHHTMGGVKINTKTEVLREDGTPIKGLYAAGELTGGLHGQNRIGG NAIADIIIYGRQAGTQSAEFASAQK >gi|308151759|gb|GL476263.1| GENE 210 216407 - 216991 566 194 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 188 1 188 189 308 75.0 3e-84 MAQLFFKYGAMNSGKTIEILKVAHNYEEQDKPVVLMTSGLDTRDGVGKVSSRIGLRRDAI PIFEETNVFDLINDLSYKPFCVLVDECQFLNKHHVIEFARIVDELDIPVMAFGLKNDFRN ELFEGSKYLLLYADKLEELKTICWFCHKKATMNLHYIDGKPVYEGDQVQIGGNEAYYPVC RKHYFHPKTVNEEQ >gi|308151759|gb|GL476263.1| GENE 211 217003 - 218076 1435 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 1 356 3 359 359 479 73.0 1e-135 MYDQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISD AEELLSENLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGG DEAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGA HRVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTAS AVRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGD RSERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEMQNG >gi|308151759|gb|GL476263.1| GENE 212 218069 - 218902 239 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase [Acinetobacter baumannii AYE] # 49 249 74 296 334 96 30 1e-18 MAKRYFEVLNWASSFLEAQGKEGYAIHYVFLERKGWDKTQWLLHMQEEMPKEEEEQLKTD LAQLLTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGT GTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL LISNPPYISEQEWHLMDASVRTYEPKTALFAENNGLALYQQLIHESQTMLKADGKIYFEI GFQQGAALQELLSAAYPQKTIKIEKDLSGNDRLAIAE >gi|308151759|gb|GL476263.1| GENE 213 218946 - 219968 1321 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 336 20 341 345 299 47.0 7e-81 METKKLTKQEIAQAAAAIQAGELVAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLI VHVNNVEMVKKYVATLPEVATKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPD NQATLALIEQANVPLVGPSANTSGKPSPTSAEHVYHDLQGKIAAILDDGPTQIGVESTVL DLTAEDGVPVILRPGAITKEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWI ISGQTAEWQAAIQQAKEQQEKIGLFLSDEQAAQLDTENAFVYSYGAETVENATKELFAGL RALDEQGATTIFAQGFAETGLGTAYMNRLKKSANQKFFEK >gi|308151759|gb|GL476263.1| GENE 214 220044 - 221282 1570 412 aa, chain + ## HITS:1 COG:SP1024 KEGG:ns NR:ns ## COG: SP1024 COG0112 # Protein_GI_number: 15900895 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 411 7 416 418 594 72.0 1e-170 MDYKTYDPDLWNAIAREEERQENNLELIASENVVSKAVMAAQGSILTNKYAEGYPGKRYY GGCEFIDIVENLAIDRAKELFGAKFANVQAHSGSQANTAAYLSLVEPGDTILGMDLSAGG HLTHGSPVNFSGKTYNFVSYGVDPSTEVIDYDVVRILAREHRPKLIVAGASAYSRTIDFK RFREIADEVDAKLMVDMAHIAGLVASGLHPNPVPYADIVTSTTHKTLRGPRGGLILTNSE ELAKKVNSSIFPGIQGGPLEHVIAGKAAAFKEALDPSFAEYSQQVIANAQAMTKVFNQAP EARLISGATDNHLLLIEVTGFGLNGKEAEAILDSVNITVNKNSIPFEQLSPFKTSGIRIG TPAITSRGFKEEDAVEVAKLIVQVLKDPENTAVHDEVKAAVAALTKKYPLYN >gi|308151759|gb|GL476263.1| GENE 215 221414 - 222043 860 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 333 78.0 1e-91 MGKFQVIDHPLIQHKLTMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMG KSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPE DIASRQLFVVDPMLATGGSAIMAIDSLKERGASNIKFVCLVAVPEGVKALQEAHPDVDIY TAALDERLNEDGYIVPGLGDAGDRLFGTK >gi|308151759|gb|GL476263.1| GENE 216 222149 - 222421 327 90 aa, chain + ## HITS:1 COG:no KEGG:EF2548 NR:ns ## KEGG: EF2548 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 177 100.0 1e-43 MKKNKKALHAIAVIASVMSVLMYVSYIPQIYGNLHGEKGNPTQPLVAMINCIFWTIHGLY GDDGETRDKSIIFANVPGIIFGFFAFITAL >gi|308151759|gb|GL476263.1| GENE 217 222495 - 222731 244 78 aa, chain - ## HITS:1 COG:no KEGG:EF2547 NR:ns ## KEGG: EF2547 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 134 100.0 2e-30 MSNFNGMVTPVVPSDAGKDFAVDTHVTFLVHGQPQTGVVTKQLKNAAVVEIDETQKNNHL MVHSNGVIVINYKQLKKI >gi|308151759|gb|GL476263.1| GENE 218 223012 - 223338 347 108 aa, chain - ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 105 1 105 108 104 66.0 4e-23 MPSSEYLFLTILGCTVATWLSRILPFLLLKKISLPQKLLEYLSFVPIVIMSALWFSSLFE QRIGHLPSLNLPYLFASFPTILAAILSKNLLLIVLVGIASFALIQNFI >gi|308151759|gb|GL476263.1| GENE 219 223325 - 224032 788 235 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 242 60.0 4e-64 MNHQLDTRTGIREALPTVFGYIGIGIAFGIVGQAAGFSPLIVSAMSFFIFAGSAQFVTVS MLTGGSPILSIVLATFLVNARMILMGMTIAPYFKAESLGKNLWLGTLLTDESFALGMNKL NHTKGRLSFEWFNAANLISYATWVFSTIIDAYLGRFIANPQALGLEFAVVAMFIGLLYLQ IISDRSMKIALQLIMVLITFGLMSIGLIFIPSNLIVLVVTLIGCGIGVMIKHAFF >gi|308151759|gb|GL476263.1| GENE 220 224029 - 224130 99 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTLIRSLFLIIEGLDFHTHVFKFYTERRKKRE >gi|308151759|gb|GL476263.1| GENE 221 224246 - 224797 555 183 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 173 10 174 189 131 38.0 6e-31 MEINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNV PYTYLLEDDYVKENPVVKKTETVTQHSEDHSYRVFNYYSDNQERNFELFQFELDPGKKYQ AVGHSKRSTEYVMVIQGALALEVGGQRYLLPKDAAMYFDANQVHTYINDGTEKVQAVVIN YYT >gi|308151759|gb|GL476263.1| GENE 222 224910 - 226241 1034 443 aa, chain + ## HITS:1 COG:no KEGG:EF2507 NR:ns ## KEGG: EF2507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 443 1 443 443 660 99.0 0 MNKKIESLGNTALSLLSNTIIVVPYLLYIQLSDGHNLLTILPFVLFYTLRMTGIFLVRGI NLSLTSLGLLKISLLLGLAGSLIGIAGAYSFPLYSISGMLLGLSGALLPPSNQSIRFFLK EEGQKISHSNLLTTVLLTAVLFGALFFKATEIGLALLVYALYFLVALVAIKSYPVSLNEL EEESAEVSRKELILFVIFFVLLLLLRSGRLLTNAVEFDYAIVGACCFFVVAVLFVSHYGK RGAYKVSLEMNLATLINGIVGNYLFLFGSIYVAGVYGRAHMGIYLYLPYVLGMIFAMIVA SKTKQWSNNIPMIGLAGSLGILLFTSWTILGLFLLSFFKSTLNSFLARRYYQETDLPKDS RILIKYTTQTKGSLFHQFILMALMLVTVVGKGGTTQFLLELTGGKGISMQTSQFLTFIKN SNSLLVLLFIAVYFVVVFRQKKR >gi|308151759|gb|GL476263.1| GENE 223 226442 - 230080 3508 1212 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 775 1021 839 1092 1806 67 27.0 1e-10 MMLSILLAQNFGFAVNAYAVTTTEAQTETTDTAKKEAELSNSTPSLPLATTTTSEMNQPT ATTESQTTEASTTASSDAATPSEQQTTEDKDTSLNEKALPDVQAPITDELLDSMSLAPIG GTEYSQTEVHRELNTTPVTATFQFAVGNTGYAPGSVYTVQLPEHLGYSTVSGDVTGIGAT WAVDAATKTLSITFNQRVSDTSFKVELKSYLTTEAEPLIKIETPGKNKKTYSFDLYEQVE PIQYNERTRTTGLDGEIFYNLDRTLTGNQTLELLTTETPGAVFGKQDNLEPQVFSYDVDI NGQILPETQTLLTPGKDYTLSDNSLGRIAITVPNMNQQKAYSLSINRTIYLESASDYNYL YSQQYPTTKIGSISLKSTTGTKQTTDFTAKTSQTSKIIADREMRSMSYVSFQSKGKYYVT IYGTLTETKVGQQIVLESTNGQEIKNPKFTAYGPLYENVKLEDYFDIKTEGGKLILTATK DSYLRINISDLTMDFDKKDINLSLSTPVIGPNKAIQLVSDQYIEPISVVNPLNAETAWGN YDQNGAYSSRTTVSVMGSKETPIQNLEIKVKHPNYLSLRATKEIYFYYKLGTDYTVTPTS DGSVIKFTTPITNEIQIPIGFNYVPDSLPKDKSIPVDTIPITMSAEGLTPVDTTVTTNSK RGSERTLQSSKNQFLVNARNDSFDSLSVRTKIPAGADVLFDIYDVSNDQVDSIYPQYWDR GYYFDKPMSPDSPGYPTITFDENTNSYTFDFGKTNKRYIIEYKNANGWIDVPTLYITGTA KEPQSNNNEGSASVSVQNEALDILSATQAANPTLKNVTKTTVTTKNIDNKTHRVKNPTIE LTPKGTTNAQIDLNSITVKGVPEDAYSLEKTTNGAKIIFKDYTLTENITIEYNTVSANAG QIYTETTIDSETLDQMSANKKKVTTAPITLKFSEGDAEGIVYLATATFYTHNIEDENQAI AKVSFELIDNVTHTATEFTTDEKGQYSFDAIMTGDYTLRVTNVPQEYSVDEEYLTGKAIK LVKGDNQLKIPLTKTIDHSRLQVKDTTIYVGDSWKPEENFVSATDKTGQDVPFEKITVSG QVDTSKAGVYPIVYSYEGKEETAHVTVKPDQSKLEVKDTTIYVGDKWEAEDNFVSATDKT GQDIPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRDDSRLQVKDSTIYVGDSWE AEENFVSATDKT >gi|308151759|gb|GL476263.1| GENE 224 230143 - 231057 720 304 aa, chain + ## HITS:1 COG:no KEGG:EF2505 NR:ns ## KEGG: EF2505 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 304 1348 1651 1651 502 96.0 1e-141 MGDSWKPENNFVSATDKTGQDVPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRD DSQLEVKDSTIYVGDSWKPEENFVSATDKTGQDVPFEKITVSGQVDTSKAGVYPIVYSYE GKEETAHVTVKPDQSKLEVKDTTIYVGDSWKPEDNFVSATDRDGHAISFDKVQVKGEVDT KKTGEYQISYTTEPVNETKPAVQSRLFSMFSNETPRQLTTVATVHVIDRNPTPLPDKNEN NQTSSSTNQTTIKRSQYVTHIVKPDKQGRYPKTGEQTNGLYRVLGLVVLLIVIISGIVIK KKRK >gi|308151759|gb|GL476263.1| GENE 225 231256 - 231957 444 233 aa, chain + ## HITS:1 COG:no KEGG:EF2504 NR:ns ## KEGG: EF2504 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 425 99.0 1e-118 MNQRTIYYGSIGTALFLSSGMLIASVNSYANEATTPGKYTVTYEVDGKIETATITVKENQ TELKLKDTFLGVNQAWSPLDNVVFLKDKEGRPLNLENVIIENNVNTQKVGLYFVTFRYES YLSIAKVYVNPTNFAAEGNMLAELPYSQAMIGPERPIIASRQDKEQQTKQEKKKNKIEQE RVNKKVLLNDELLKKIDTIAPVEITGGAASGSSQFGTTLSFLSGSLLYGTRRV >gi|308151759|gb|GL476263.1| GENE 226 231958 - 233394 1222 478 aa, chain + ## HITS:1 COG:no KEGG:EF2503 NR:ns ## KEGG: EF2503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 478 1 478 478 865 99.0 0 MEFLLLDDRENLKLAIIRKLEQQYSFSERKDRLCKQLAISPYLLERNITEINADLQRFGL INEMEISEKNNEILLSQSLRISSSIIEEYYLKDSLEFNLLKTIFFHQFTSIKKYGEKHGM SRTVVYKIVDHIRKELGQYGIKLSKNLQLSGNEMAIRQYFTMLYYRIYKDSEEVYNQTDL RAVNQLLAQLKGSYENITNFHLFKHYVLVALERTQRKANYFLSQEENPFAFDEESSIYQE IQSWINEVMKATHAEKNAEIQGIIGNLSVYQSELISEHLLSSHNEAITATKTLFFSYMPF TISDEEFYQEIVPIIYQHRFITPFIDITLRIMDLEFFQERYPIVFNSCRQFLFALDCSAF EFSKLSLFFDLLLVLSRLYDQRNEKSTINLYVNFTQGEKYTQFIKEQIKIFESFSIHFHS AIRPDTDLVVSDYLPKTLFSVKCLIWLAPPRASDWQNFGNEIVRINKELQQTKQRKSE >gi|308151759|gb|GL476263.1| GENE 227 233638 - 234825 1307 395 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 5 388 414 377 52.0 1e-104 MNRKEKTNLDSRIDYGVILPVFLLSLIGMLSLYVALYNDPSKPKIGSLLMKQGLWYLVGG LSIVIIMHFSSKLLWRLTPVFYALGLVLMGLLLKFYDPVLAEQTGSKNWIRFGGTTFQPS ELMKIAFILMLAYIVTMHNVKYVDRTLKSDFWLIAKMLLVAIPVIVLVLLQKDFGTMLVF LAIFGGVFLMSGITWKIIVPVFILAALVGAGTIYLITTETGRDLLSKLGVEAYKFDRIDL WLNPFHTDPDRSFQPALALTAIGSGGLFGKGFNVSDVYVPVRESDMIFTVVGENFGFIGG CFIILLYFILIYRMIRVCFDTNNEFYAYIATGIIMMILFHVFENIGANIGLLPLTGIPLP FISQGGSSILGNMIGVGLIMSMRYQQETVRTRSGR >gi|308151759|gb|GL476263.1| GENE 228 234850 - 235209 449 119 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 115 1 114 117 132 56.0 1e-31 MYTLYEYPKCSTCKKAKAWLDQQGVKYQAIDIKATPPSSEQLAKWMKETGLPVRRFFNTS GVLYREQGLKDLVDSFSIEEASQRLAADGMLIKRPILLKDNTFLTNGFKEADYEGVLGK >gi|308151759|gb|GL476263.1| GENE 229 235206 - 235529 533 107 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 11 107 15 114 125 72 39.0 3e-13 MSEMKQIDQLWILPTEAGYKIGLTAEAQEDLGKITFATFPKVGQTLAKGDSLIELEAEKA VSEFSSPLSGKVIAINEAADQEPSALDEENAWIAVLADVEPTEFENL >gi|308151759|gb|GL476263.1| GENE 230 235703 - 235783 90 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLLRGARYSQRYAKNQVPYEVIIEK >gi|308151759|gb|GL476263.1| GENE 231 235944 - 236981 1381 345 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 3 342 1 338 340 384 58.0 1e-106 MALIELRHVKKEFSGKAGKVTALKDIDLTVESGDIYGIIGYSGAGKSTLVRLLNGLETPT EGEVEIQGQDIALLPNKELRNFRKKIGMIFQHFNLLWSRTVLENIMLPLEIAGVPKQNRK SRAEELIKLVGLEGRENAYQSQLSGGQKQRVGIARALANNPDILLCDEATSALDPQTTDE VLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKKPQTEIAK RFIQQEADKNIEETELVVEEMLEQYPNGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQ GNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVIGNE >gi|308151759|gb|GL476263.1| GENE 232 236974 - 237660 842 228 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 20 228 10 218 218 220 61.0 2e-57 MNNRGLASFFDFSQIDISKLQEKTIETLYMTGISIIVVAILGLILGLLLFETSGRKGILS RLLYWLVAIFVNIFRSIPFIILIVLLIPFTKIILGSMSGVKGSLPALIISAAPFYARMVE IAFREVDKGVIEAAKAMGANRFQIIWKVLLPESLPALVSGLTVTTISLVGYTAMAAAIGA GGLGSLAYQDGFQRGQNTVTLVATICILIIVFAIQWLGDTVAKKIDKR >gi|308151759|gb|GL476263.1| GENE 233 237675 - 238493 1118 272 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 3 272 2 276 276 280 53.0 2e-75 MKKRTLWSVITVAVAVLVLGACGNKKSDDSVLKVGASPVPHAEILEHVKPLLEKEGVKLE VTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYK SLQEIPDDSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH ESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKESSPYANIIAVRKEDENN ENVKKLVKVLRSKEVQDWITKKWNGAIVPVNE >gi|308151759|gb|GL476263.1| GENE 234 238841 - 239656 751 271 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 26 259 23 252 252 316 63.0 3e-86 MLRFFPQKNKYVEEASQYAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVK KITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMG YQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKAYTADE ITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGD TLETAIASFQNRNRRFGGLKETTETEGSDPQ >gi|308151759|gb|GL476263.1| GENE 235 239653 - 240453 973 266 aa, chain + ## HITS:1 COG:SPy1964 KEGG:ns NR:ns ## COG: SPy1964 COG0575 # Protein_GI_number: 15675762 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 241 52.0 7e-64 MRQRVITAIVALIIFIPIIWYGGFAIEIAAVALAVVGVYELFRMKGLTLLSFEGVLSALG AVFLVIPTIKWLNFLPEMQTNFILFYVTVMLLLGASVISKNTYTIEEAGFPVIVSLYVGM GFQNFISARSAGFEVLLFALFIVWATDIGAYLFGRRFGRHKLMPDVSPNKTIEGALGGIL SAVVVAALFLVFTANKGLFPYPMPVMLVLTVLFSIVGQFGDLVESSIKRHYGVKDSGNIL PGHGGILDRFDSLLFVFPIMHLCGLF >gi|308151759|gb|GL476263.1| GENE 236 240926 - 242095 630 389 aa, chain + ## HITS:1 COG:BS_tagF_2 KEGG:ns NR:ns ## COG: BS_tagF_2 COG1887 # Protein_GI_number: 16080625 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 9 388 4 385 387 352 45.0 7e-97 MKKFLENSIHQAIKACFFFLGKLPKKKLFIFESFHGKQYSDNPRAIFEYIRDNCPEYQCI WAVKKGYEIPFVEENVPFVKRLSWRWLWLMPRAQYWVFNTRMPAWMYKNQTTIYIQTWHG TPLKKLGLDIETVKMPEHETESYKLEVIQEAKRWDYLISPNAYSTRVFRQAFHYEGEILE IGYPRNDLLVCENKDKIAFSVRNQLGLAANKKIILYAPTWRDDESIRKGAYRFTNHLPVE QLLEIDSSIVILTRLHYLIAESFDISAFGSRVIDVSSYPDINQLYLIADLLITDYSSVMF DFALTKKPMLFFMYDKEKYQNSTRGFYFDPTAILPGKIVTDTDSLVTSVKNVLFSKTEQE QRLYVQFFREFCLENQDATRQLISEILKR >gi|308151759|gb|GL476263.1| GENE 237 242114 - 243580 1174 488 aa, chain + ## HITS:1 COG:SA0248 KEGG:ns NR:ns ## COG: SA0248 COG0463 # Protein_GI_number: 15925961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 43 316 3 268 573 93 27.0 8e-19 MEKQKEVQKEYEEYQYMLDTETWKKELSQFKLSSSEKISKNPKVSIIIANYNNAPYLKKM MDSLVQQTIGIEQLQVMFIDDCSTDHSLKVIEPYLERYPNIEIYQLLENTGGAHGPRNVG IVNARGEYSVFLDADDWYDLNALKYLSDLLDDSHDDFAVSGLIQSTDGHLMLKSKPYYVD GSFKNRSIQELPAEFYGWLGPQAIMLRTSLIHNNNLHFVNQRVADDVLFFYEAMRFSKTI TQGERLTTYLNRDADNESLSKSINRTFMLSWLRALSYINQQFPDDLSKERMLARRLEWLI YDFCIRRDTGYPFSKKRLQDFKVQMDQYLGELNFDPSPYFRSDVRQIIWTFLQTNDIDGL YWFIQCQSIRWVLVNRFGYVSKTERSYYYPRLLKRFPAVRMNAYAEATQREGNTLSLNVY THQKITGFEIKELKNPFETRQRLAFKKISETSYQVELPEKFSNKESRFTIVFDNYLEIGV KDFSKFFA >gi|308151759|gb|GL476263.1| GENE 238 243650 - 246160 2527 836 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 6 226 5 223 344 136 34.0 2e-31 MENVKVSVIVPVYNVETYLEEALMSLKNQTLKEIEFLIINDGSTDNSQKIIEEIAQDDPR FRVFNVKNGGIGKAFNLGVSEAKGEYIAEFESDDYVALHAYERLYNTAKSHHADVVRCNW VEFSSEEEVERDILWQYPDKYNQLIDLKTTDLIVQVYPWNAIYKKSMIEKENVTWDEEIK SYGDTGLFWKINSASQNVIFIKDCLYFYRQDNPNSTVNNVATKVPFLFQQFKLIRSNLIE QNKFERYKGYFYKQMFEKYFWAIEKLTHLRDESVYEVIQKVAVDFKQAIEIDQLNDIDFE YIKQFYQIANDPVAYYEDYLKNLYKVSVVMPIHNASKYLRQTLETVCEQSLREIEIILVE NGSTDNTMDIINEFAVKDPRITGISIGKSNPGHARNVGISMARGRYLQFLDADDHFEANL LQDAYYRAYDSATDILLFGMKEKLPNGEVHVVHNPLLTNGGRMSGEEISLDEVTPYLYDK LFLLEYIKENNLVNLEQFVGEDAYFTYTALLGTEKIVALNKYLLTRIVRQDGLMSTYGMN YRDEFNLHDKMLEYLKQHAPNRIEAYRLKIINTLNWFIFDMNRVDQAFKERFYQELKEKY IQQLGLDLVKKEKYSNDPEQVERITRIQNILQYNLEIYQNIYKDFGMKKTFIIPNVHIQE RGGKVIFGQEKAQGNGTAIEMFSIIIADNDTSNASGVIDFVYMGDNTKIIHDSLLVSLLI KKEGTTLKSIVLQAEWEKGYTLLQENMYYTFVDNVFTIWAGYTQKYAAFDYNVRILTSRE GETHFSVVRQNQGYIQDTMTSIGNELTPINKIEGNEPTTIKKAVSKSLKKAKGLLK >gi|308151759|gb|GL476263.1| GENE 239 246184 - 247035 726 283 aa, chain + ## HITS:1 COG:no KEGG:EF2490 NR:ns ## KEGG: EF2490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 283 1 283 283 555 100.0 1e-157 MNDLWNFLDNHPEEKELIKAKALQGYTVDGILNDQLNFVALDTLSIGLEKFGNIHYSIQI PEFNELLSKKMVVLFVPADGVGHSGAKERYFGLRQWNTLSQSVRKNTIILRIADVGFVSG SYYTLFEQEILDLIEAKKTEFGLKHQDIIFYGNSRGGTGALLLGITGNYKTVSVDPVIDR EPWVNSADGRIDRQLMFDFVEMDFSNRIKDKMEQSNYELENITVIASEANKKMYEKIYPL SNGFTLKKLELMIDSENTIGIHGLTIMESIHLQLALINNYLFD >gi|308151759|gb|GL476263.1| GENE 240 247062 - 249515 2467 817 aa, chain + ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 518 809 1 295 295 220 41.0 8e-57 MKKAAIMGWWYNQNYGSILTYYALNKYVQNKGYETVMIDGPLGYKNRSNFRAWMPLAYNF FKKNNMPYTEQLTKETLPTLNDLENLDTFILGSDQMWNPWNGWVDDDDFLDFVYPRNKTI AYSVSLGKADTSKYDPKWVANRKKDITQFNHVSMREDFSVQIMKDIFQEEVIQALDPTYL VERSEYDSLADQATFKRQESGDYMAVFFLDINKEKVRVALAIAEKLGLKLVVLPNPLKGR ELAKKTFPNTVEYVSEDTPENFLSVYREAKYIITDSFHGTVFATIFQKPFSIFYNEQRGI DRFNSLMNLFELGETRRVYEQNTKQEIEENKNISLALDYQKTAGKIAREKEISDKWLTDA LTSKFSPDEDEVYDEFRRYIINKPLDFYRAKTTVPISAAIVLSPNGTIKNSNPNESFWKL TDKELIFMNNHREVTTRFNREKFKGKETFSPFRIVGKYVKDEKIEHVMYLHPIQKPKPKP KQGTEKKALAIPENLLTRKQLIMKIVQNERIRSWKQDLLEELPDLELFVGRELKEYASNF VGGPADLLIFPKTIEEVALIVKYAKNNQIPLTVIGKGSNILVRDGGIRGITLNMTALNYR KITGNVLTVSAGASLIETSYYLLEHLKCGLEWADNIPGTIGGAVYMNAGTVKDINSMFLE ATIVDENGEIKVLNKEDVQFSHRYSSFMDHPEWIILETKLQISEGNLENMVNDMVGTVEI RERMHPLTHPNHGSTFTWGRAPRLIQQAGLVGTRIGGVKVSEKHPGFFINVEQASAQDYE ALIYLVIAKVYEFSGFLLKPEVRILGANMWEASLTFK >gi|308151759|gb|GL476263.1| GENE 241 249533 - 249931 401 132 aa, chain + ## HITS:1 COG:no KEGG:EF2488 NR:ns ## KEGG: EF2488 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 218 100.0 7e-56 MKKIITIIVSLAIGIGCGFWSGYYISKKYSENQETTISKSTNSEQPLITNGEYQVTANWD WKTLVVKDNVWTLDGKRIYDVSTTNDNIVILKGKNLKSLVVYKIEKDNEKINLYSYTKEG VGKKVLATLVKK >gi|308151759|gb|GL476263.1| GENE 242 249990 - 251129 1391 379 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 8 370 2 360 367 426 60.0 1e-119 MKYNTKNYDYLIVGSGPFGATFACEAAKRGKKVLVIEKRAHIGGNMYTHKENGINVHDYG AHIFHTDNKEVWSYVNQLTEFNGYINQVVANYKGELYNLPFNMNTFYQMWGVKTPAEAQA KISEQREAAGIKGAPKNLEEQAIRLIGTDIYEKLIKGYTEKQWGRKATELPSFIIRRLPT RFTFDNNYFNHRYQGVPVDGYTAMFDKLLESELIDIQLNKDFLAEKETYLSEFPKIVYTG MIDAFFDYSYGELEYRSVRFENETVDSNNAQGNAVINYTDAETPYTRIMEWRHFDQQADE NKTILTKEYPQDWDRSKEAYYPVNDEKNSLLFRKYKEKANAQEKVIFGGRLANYQYYDMD QVFGAALKAVAKEFGEMAN >gi|308151759|gb|GL476263.1| GENE 243 251155 - 252498 1072 447 aa, chain + ## HITS:1 COG:L137446_1 KEGG:ns NR:ns ## COG: L137446_1 COG1134 # Protein_GI_number: 15672897 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Lactococcus lactis # 4 340 5 341 350 311 46.0 2e-84 MEKELKVRTKLLTKEYSLAQTRIDKLKTLFSIFQNKVPTFWALKGVSLDVYSGETIGIIG LNGSGKSTLSNIISGITPQTSGELEINGEVSIISIGAGLNNNLTGRENIRMKCLMLGEKN KEIDAKIDDIIEFSELGVFIDQPVKTYSSGMRAKLGFSIAVHQNPDILVIDEALSVGDQT FYNKGLKKMLAFKEQGKTIFFVSHSIQQVEQICDRVAWMHYGDLRAFGETKHILKEYRAF LHRYNHFTEPQKESYQRDGKAKQRNFSLEQLQETILEKANQQVGSRRTTKEVIKFTTKNK IGDKMTLGTKSLLILLLCMIFYVSLTFVKGISLTTAFIHPAETIQRIFVPEKVAGKDTNA VKTTKAKPASTKESSQQEEVQSSSTNASENNNGEQAVSTYTVEVGDSVSLIAENHGLTIE QLQTLNPEIIEVPIYPGQVLKLKEVTE >gi|308151759|gb|GL476263.1| GENE 244 252498 - 253310 729 270 aa, chain + ## HITS:1 COG:lin1062 KEGG:ns NR:ns ## COG: lin1062 COG1682 # Protein_GI_number: 16800131 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Listeria innocua # 1 270 1 267 267 219 46.0 3e-57 MREVKLILAEQFSYLGVAQRIAKYSNKALYQSHILGNLWQILSPLIQLGVYYFAFGIALG GARTVKGGVSYIAWLMVGLSTWIFLSTVTKQASSSVYMQVGMVSRMKFPISILPMVKIFS ELPSYFAFTTLAAIVSISTGEKISIYWIQLPYYIVAMIIFLYSFSLINSTIAALIRDYQI FLNSIIQVLMYMSGVFWDLSTKNLPSWLSKILMLNPYAYIINGFRDTFFYKRWFFEDKPQ LIVFWLTTLVIFIVGAHLHVKFRSKFVDYM >gi|308151759|gb|GL476263.1| GENE 245 253973 - 254623 825 216 aa, chain + ## HITS:1 COG:AF0720 KEGG:ns NR:ns ## COG: AF0720 COG2102 # Protein_GI_number: 11498327 # Func_class: R General function prediction only # Function: Predicted ATPases of PP-loop superfamily # Organism: Archaeoglobus fulgidus # 8 215 12 210 214 115 32.0 8e-26 MKKFCLSYSSGKDCLLAMDRLVQAGNQPVALVTTLSDEINRSWFHGIPISVLEAAAEALD LPLVISHNNETNYTEKVVEALQETKKLGAETVCFGDIDIEQNGAWDRQVALSAGLEPQLP LWQENREALVKEFLAKGYTAIIKTVSKEAGIPIKFLGEPLDETFITYLKEHQLDICGENG EYHTLVIDGPLFKKRLNYYASGIYESPYAYSLIIDA >gi|308151759|gb|GL476263.1| GENE 246 254711 - 254938 423 75 aa, chain + ## HITS:1 COG:no KEGG:EF2483 NR:ns ## KEGG: EF2483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 115 100.0 8e-25 MEETVFFNLGNALASKRDQKELIKEAQIAKDTRKIPGKLIIVEDEENGTHILFELADQTE PSAETKEFKVKKVID >gi|308151759|gb|GL476263.1| GENE 247 254986 - 255087 56 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEHLKTFALLPICFFKYTNHLFDFDILFVSFV >gi|308151759|gb|GL476263.1| GENE 248 255086 - 255817 643 243 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 6 205 4 202 227 64 25.0 1e-10 MENRGILFDKDGTCIRFDTLWQAGLQACFETLSMLAPHHSAEIKKILAIQEQRFLQKHLL DEVLYQELYQELAQFEELVEQGISSRWLEQFFYDYLRKNLKKIEPIGDLKQLFLELKRKN YKIGLATSDTLPATMLIMEYLGLTEMFDFIATGDRYLPKPDADMLQAFCQSCQLKATEVI MVGDSLVDVFMGTCHGKAGIGVLTGNCQSTDFEKFEVAYFRDIHEIPYQELWGNTKKKKI YYV >gi|308151759|gb|GL476263.1| GENE 249 256172 - 256915 816 247 aa, chain - ## HITS:1 COG:no KEGG:EF2480 NR:ns ## KEGG: EF2480 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 247 1 247 247 304 99.0 2e-81 MKKNDSNEGKVKKPFYKKIWFWVVVVIVLGIAGSGLGKEDKKASNDTKEVKTEASSSKAT NSSKNDTKKESSEKKSEDKSKDNSDLKATYDKINVGDIMNSSEGGSTEDEVKAILGEPAS SSTTDIQGISTTTLSWTNVKGGDLLASITVSFSDGKAASKSVSGLKVAKHDKVTADQVNN IATDGSYSEEQARKDLGDPTGITSTNINGEKNDTLIWMKNLDGDLGATVTVSFSNGNAIS KSSSGLK >gi|308151759|gb|GL476263.1| GENE 250 257138 - 257938 847 266 aa, chain - ## HITS:1 COG:L188985 KEGG:ns NR:ns ## COG: L188985 COG1512 # Protein_GI_number: 15673333 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Lactococcus lactis # 21 266 22 261 261 123 34.0 3e-28 MKKRLLPIFFLILLAFGLALPVSAAENSIDDDAQLLTPDQINQLKQEIQPLEEKTKASVF IVTTNNNTYGDEQEFADHYLLNKVGKDQNAILFLIDMDLRKVYISTSGNMIDYMTDARID DTLDKVMDGMSQGNYFAAAQTFVQETQAFVDKGVPGGHYRVDSETGKITRYKAITPLEMV IAFAVALILSLVFLGINISKYQLKFSSYQYPFREKTTLNLTSRTDQLTNSFITTRRIPKN NGGMGGGGSTTHSTGGGTFGGGGRSF >gi|308151759|gb|GL476263.1| GENE 251 257935 - 259080 914 381 aa, chain - ## HITS:1 COG:no KEGG:EF2478 NR:ns ## KEGG: EF2478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 381 1 381 381 712 98.0 0 METTFTHKCPNCGGPLLFNPKDQKFHCEYCLNIYTEEEVTRYEQQQHEAHLENPSTTTDK ENLTFTPEGESSATQQTETTENEAAADAGTMEIFNCPSCGAQIVTDATTAATYCYYCHNP VVLAGRLSGEFLPENVLPFTIEKDEAIEKFLAWTKKKWFIPRDFFSKNQIDKLTGVYFPY WVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNVGRSGKLSFKELVKNALSKNVQQKM VEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEAIKKHVQQELQDYSESLLRDSASGYTT LTNVRTDISLNQENNHYMLLPIWLVTYRSQEQSKKVYYYAMNGQTGKVSGVLPISYTRLG LATLGIFAGLLALFLLGGYFL >gi|308151759|gb|GL476263.1| GENE 252 259184 - 260416 1293 410 aa, chain - ## HITS:1 COG:L186490 KEGG:ns NR:ns ## COG: L186490 COG4260 # Protein_GI_number: 15673331 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Lactococcus lactis # 15 405 1 384 389 566 69.0 1e-161 MGLIKAATSSVGGGLADQWLEVIEPDNMGDTTVMTKGVFVRKDDKRGSNRKGTDDVLTDG SVVHVYPNMMMLLVDGGKIIDYTAEEGYYTVKNDSAPSMFNGSLKDAIAETFSRFKFGGV TPQKQQVFYINLQEIKGIKFGTPAPLNYFDNFYNAELFLRAHGNYSIKITDPLLFYTNAI PKNQTQVDINDINEQYLAEFITALQAAINQMSADGQRISYVPSKSVELSKYMQTALDEDW RTNRGMEIVSVAVASISYTDDSTKLINMRNEGAMLSDPGVREGYVQGSLARGMEAAGKNE GGAMSGFMGVGMGMNANGNYFAQASQTNQQQMQEKQNQQNAQGATDTWTCPQCGTENTGK FCSNCGTPKPTNEKPKLEMKCSECSEIVDLSNGIPKFCPHCGKPFQGVPL >gi|308151759|gb|GL476263.1| GENE 253 260624 - 262666 2381 680 aa, chain + ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 1 675 1 676 678 569 48.0 1e-162 MERSNRNKKSSKKPLILGVSALVLIAAAGGGYYAYSQWQAKQELAEAKKTATTFLNVLSK QEFDKLPSVVQEASLKKNGYDTKSVVEKYQAIYSGIQAEGVKASDVQVKKAKDNQYTFTY KLSMSTPLGEMKDLSYQSSIAKKGDTYQIAWKPSLIFPDMSGNDKISIQVDNAKRGEIVD RNGSGLAINKVFDEVGVVPGKLGSGAEKTANIKAFSDKFGVSVDEINQKLSQGWVQADSF VPITVASEPVTELPTGAATKDTESRYYPLGEAAAQLIGYTGTITAEDIEKNPELSSTGVI GKTGLERAFDKELRGQDGGSLVILDDKENVKKALQTKEKKDGQTIKLTIDSGVQQQAFAI FDKRPGSAVITDPQKGDLLATVSSPSYDPNKMANGISQKEYDAYNNNKDLPFTARFATGY APGSTFKTITGAIGLDAGTLKPDEELEINGLKWQKDKSWGGYFATRVKEASPVNLRTALV NSDNIYFAQQTLRMGEDKFRAGLNKFIFGEELDLPIAMTPAQISNEDKFNSEILLADTGY GQGQLLISPIQQATMYSVFQNNGTLVYPKLVLDKETKKKDNVISANAANTIATDLLGSVE DPSGYVYNMYNPNFSLAAKTGTAEIKDKQDTDGKENSFLLTLDRSNNKFLTMIMVENSGE NGSATDISKPLIDYLEATIK >gi|308151759|gb|GL476263.1| GENE 254 262782 - 263501 288 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 226 2 185 380 115 40 1e-54 MRILAIDTSNQTLSIAVCENQKILGSYTATVKRNHSLTLMPAIDYLMSQLNLAPTAIDRF VVAEGPGSYTGLRLGVTTAKTLAYTLKKELVGISSLQALAANCVGQTGLIVPLFDARRKN VYAGAYRFVDGVWQNELPDQHISLRELLEQLKNEPNLFFVGEDVEKFTEEIAQIIPHGEI CDVPQWQIPNAAVLAALGSVAEPVENVHGFLPAYLKKVEAEENWLKTHTPNGESYVEKL >gi|308151759|gb|GL476263.1| GENE 255 263485 - 264027 291 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 1 178 1 179 190 116 36 1e-24 MWKNFNFVTKYFTKRRQRYITKTIAMNQQEFQLREITYQDIKDLLAIEREVYAGELPWTM SAFMAELGSKAPHLYLLAAINGKTVGFIGCRIQGTDAHITNVAVHTAYQGLGLGRSLIEE TRIFAKKNRCETLSLEVRMSNVKAQRLYRKIGFVSQTVKKGYYDENNEDALEMIIDLKEE >gi|308151759|gb|GL476263.1| GENE 256 264035 - 264499 190 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase [Psychromonas ingrahamii 37] # 1 149 9 160 162 77 27 5e-13 MLVTKKEISVANIGEELWRFSNSSYTTGSPWTETQFAEDFAQENSEYLFLVENGQWLGYI AYHFILDEAEISHVVVNGQKQHQGIGCQLMKAFKEYVKSRNITQIFLEVRESNTLAQKLY EKTGFRKVAVRKNYYKEPQENAFVMCAKLRKEAQ >gi|308151759|gb|GL476263.1| GENE 257 264496 - 265542 715 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 10 319 518 834 860 280 47 2e-80 MTIFTKERKLLLAVESSCDETSVAVIEDGDKILSNIVASQIKSHQRFGGVVPEVASRHHV EQVTICIEEALTEAKVTPEELSGVAVTYGPGLVGALLIGLSAAKAFAWAHQLPLIPVNHM AGHIYAARFVAPLEFPLMALLVSGGHTELVYMKEDGSFEIVGETRDDAAGEAYDKVGRVL GLPYPSGKEIDALAHEGTDTYQFPRAMLKEDNYDFSFSGLKSAFINTVHNAEQRGEALST KDLAASFQASVVEVLVTKTIRACQEYPVKQLLIAGGVAANQGLREAMRHAISEQLPEVTL LIPPLKLCGDNAAMIGAAAFIEAEKNHFASYNLNAEPGVSFMTISEEG >gi|308151759|gb|GL476263.1| GENE 258 265861 - 267552 2188 563 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 724 62.0 0 MNNKEIVAKALHDVLNEELTMDQIEQLLENPKSVDHGDVAFPAFSLAKIYRKAPQQIAAE LAEKIDGTNFEKIEVVGPYLNFFMNKEAVSQAVIGAVVKEKNNYGNSTFGNNGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAFILEKIGYQPIRINHLGDWGTQFGKLIVAYKKWGSEE AVRQQPINELLRLYVQFHEEAEEKPELEDEARAWFKKLEEGDQEANELWKWFRSESLKEF DKIYSMLEVEFDSYNGEAFYNDKMDEIVTLLEEKHLLTENQGAEIVDLTEYNLNPALIRK SDGATLYITRDLAAALYRKRTYDFAKSLYVVGNEQSNHFKQLKAVLKELGFEWSDDMEHI PFGLITQGGKKLSTRKGKIVLLEEVLNEAVTLAGNQINEKNPDLANREEVAKQVGVGAVI FHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFTPDATQRYALNDKD SWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDAQKEARLAL VYAVATVLKEDLRLLGLHAPEEM >gi|308151759|gb|GL476263.1| GENE 259 267693 - 268208 626 171 aa, chain + ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 10 162 3 150 166 179 64.0 3e-45 MAPNYMTEKWREDEEYLSYVEDLLATEEVQKLAEYTQHMHSTRLEHSISVSYHSYKLAKR WNGNARATARAGLLHDLFYYDWRTTKFDEGSHAYVHPRIAAKNAEKITELSDLERDIIIK HMWGATIAPPKYKESYIVTFVDKYCAVKEAALPMTTAMKTKWRQYFGQQSI >gi|308151759|gb|GL476263.1| GENE 260 268289 - 268582 293 97 aa, chain - ## HITS:1 COG:no KEGG:EF2469 NR:ns ## KEGG: EF2469 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 97 11 107 107 173 98.0 2e-42 MEKNLTLEQVGNFVGVGKSTVRKWETGMIENMGRDKIVALSKVLDVSPLEILGIPETEET PFVVPTNIMNIYKQLTTENQEAVFRYAQKKLTEQNYF >gi|308151759|gb|GL476263.1| GENE 261 268790 - 269038 246 82 aa, chain + ## HITS:1 COG:no KEGG:EF2467 NR:ns ## KEGG: EF2467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 92 116 87.0 4e-25 MESNLIHSKLKLKGKNVEWLASEMTAAGQPISASTIYKKLKGEVVFKATDIKLISKLLDL ESEEIMVIFFYELVSKKTRKGC >gi|308151759|gb|GL476263.1| GENE 262 269249 - 270514 1224 421 aa, chain + ## HITS:1 COG:RSc1803 KEGG:ns NR:ns ## COG: RSc1803 COG0038 # Protein_GI_number: 17546522 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 14 400 4 390 431 281 44.0 2e-75 MKKETKQLLSISGYMAKWLLITAIIGLFMGALSAFFLKSLTYVTDVRLANPWLLFILPIS GVVFTYFYTRFGKNASRGNNLVIEQGNGGEEDIPLRLIPLTLFGTITTHLFGGSVGREGT AVQMGGAIANAVGKVFKLSALEREVIIISGISAGFSSVFGTPLAGTVFGLEVLAIGKVRA EALFPSFFAGLFANFVTESFGVTHTHYPMGKIPTWSVDLFVKLFLASICFGLAGWVFSRS IVFLKKTYANWFANVYLRAFLGASIVVLFVVVLNNQRYLGLSLPLLEDAFAGNAQPFDFI GKLFFTVLSLGAGFQGGEVTPLFEIGATLGSSLAPLLHLSIPFLAGLGFIGVFSGATNTP IACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYASQQSLYRKGTAEYPLFNVLKNRR K >gi|308151759|gb|GL476263.1| GENE 263 270564 - 270842 444 92 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 3 91 92 92 55.0 2e-19 MKDYQYPLDLDWTTEEMVIVTNMWTAVEQANETGLPVDKFLTTYQQFKTVVKSIGEEKRL GREFENASGYSLYRTLQQAKKQGSGKLKLGDD >gi|308151759|gb|GL476263.1| GENE 264 270843 - 271625 1024 260 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 1 257 1 262 265 180 37.0 3e-45 MTETQKFVQTIQSWLFEAADVIRMNLESELTVQQKNGRTDLVTNMDEQTQEFLMNKIQTN FPEDQILGEEKGYNTLKSFAGRVWIIDPIDGTMNFVMERENFCIMLAVYEDGIGKLGFIY DVMREELYWGGKGLGVYRNNQLLKAPTMKALADGLWGMNAYMHGKNIHHATEIGQASMGV RISGCAGLEIIAMLKGNHHGYLSNLSPWDYAAGLVLLEEFGFKYSGITGKPLTFAGREYF IAATPETYDEVFTRYLNESE >gi|308151759|gb|GL476263.1| GENE 265 271846 - 273681 2186 611 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 613 613 1019 86.0 0 MKYRDDIRNVAIIAHVDHGKTTLVDELLKQSDTLDGHTQLQERAMDSNALESERGITILA KNTAVDYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE QKVTPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVVYASALNGTSSESDDP ADQEPTMAPIFDKIIEHVPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMKVGDQ VALMKLDGSVKNFRVTKILGFFGLQRVEIDEAKAGDLIAVSGMEDIFVGETVVDVHNQEA LPILHIDEPTLQMTFLVNNSPFAGREGKYITARKIEERLMAELQTDVSLRVDPIGPDSWT VSGRGELHLSILIENMRREGYELQVSRPEVIEREIDGVKCEPFERVQIDTPEEYMGSVIE SLSLRKGEMQDMINAGNGQMRLIFLAPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMIQ GTIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPTTEVYEGMIVGENNRDNDLTVNI TKAKQMTNVRSATKDQTSVIKKPKKLTLEESLEFLNEDEYCEVTPESIRLRKQILNKNER EKASKKKKKAE >gi|308151759|gb|GL476263.1| GENE 266 273998 - 275767 2025 589 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 583 6 586 590 709 58.0 0 MSALQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTL VISPLISLMKDQVDALNLMGIPATYINSTISYQEMNHRIQLAVNKEVKLLYVAPERLESY DFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQFQQQPTVIALTATATPQV AEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNTGQSGIIYASTRKE VERIYHLLESKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFV IHAQVPGNIESYYQEAGRAGRDGLPSDAVLMFAPQDLQIQQYFIEQFEMTIDYKQKEYLK LREMSQYANAQMCLQKYILRYFGEEGTDCGRCSNCLDNRELVDITVDAQKVLSCVKRMGE RFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSDGQ FPLLSVSTEGVQVLLGERKVFRKEDQKVRKVAVDDALFERLRELRMDMAQEAGVPPYVVF SDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEYQETKK >gi|308151759|gb|GL476263.1| GENE 267 275994 - 276299 450 101 aa, chain + ## HITS:1 COG:lin1058 KEGG:ns NR:ns ## COG: lin1058 COG4838 # Protein_GI_number: 16800127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 84 12 86 93 77 53.0 6e-15 MDEGISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATR LGILTNDEGHRLLSDLERELNQLYTDVYEETQEKNEIGKEG >gi|308151759|gb|GL476263.1| GENE 268 276303 - 277511 1382 402 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 393 2 398 409 342 48.0 6e-94 MPNKVKKRHLLDYSIFIPYLILSIVGLIMVYSSTSALQVMKGFSPTSFVINQVAFWVVGL VAMFFIYKMKTSVFQNRSFIMFAIAVITVMVLAVRIPGIGKEINGARGWIEIGGFSMQPA EYLKIMVVWYLSYILARRQKTINGGMDQFKQAAGRPLMLVFVLIALVAIQPDFGNAAILT LITIVMVLASGINYMYTYLVGGLGILGSITAIQLLIMSKGKIFPARYQYIYNRFAVFKNP FLDERNLGHQLANSYYAISNGGWFGKGLGNSVQKKGFLPEAHTDFIFAITLEELGIIGGL AILGLLMFMIARIILVGVRSKKPFNSLMCIGIGTMLLIQVFINVGGITGIIPLTGITFPF LSQGGNSLLIISIAVAFVLNISADETRQKLENEYYLSLEQNQ >gi|308151759|gb|GL476263.1| GENE 269 277544 - 280972 4026 1142 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1139 1 1136 1137 1653 70.0 0 MKKVLVANRGEIAIRIFRACTELDIQTVAIYAAEDEYSVHRFKADEAYLVGKGKKPIEAY LDIENIIQIAKKSGADAIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAK EAAVAAGIASIPGSDGPVATVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREG YERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKVVE VAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLVEGDQFYFIEVNPRVQVEHTITE MITDIDIVISQLQIAQGLDLHKDMHLPKQNELTLKGAAIQCRITTEDPLNQFMPDTGKID TYRSPGGFGVRLDVGNAYSGYAVTPYFDSLLVKVCTHGFSFEQAISKMQRCLKEFRIRGV KTNIPFLQNVVSYPAFQSGEAKTTFIDNTPELFEFPRMRDRGNKTMKYIGEVTVNGFPGI ERTEKKYFEAPRVPTDIEVPEKVITAKNILDAQGATAVIDWVKNQESVLMTDTTFRDAHQ SLLATRVRTQDFKAIAGLTDAALPELFSSEMWGGATFDVAYRFLTEDPWQRLRKIRQLMP NTLLQMLFRGSNAVGYQNYPDNVIEEFIKESARQGVDVFRIFDSLNWISQMEKSIQVVRD TGKIAEAAICYTGDINDPARAKYNVQYYLDMAKELENLGAQIIAIKDMAGLLKPQAAYRL ISELKAATDLPIHLHTHDTSGNGIITYSAATKAGVDIVDVAMSAMSGATSQPSMNSLYYA LVNGERTPTINIDNAQKINHYWEDVRMYYQPFENGLNAPQTEVYMHEMPGGQYSNLQQQA KAVGLGHRWDEIKKMYHTVNLMFGDIVKVTPSSKVVGDMALFMVQNHLTEQDVYARGEEL SFPESVVTFFQGDLGQPVGGFPKELQRIILKGRPAFTERPGDLAAPVDFAKVQEELAEKI GYQPKLEEVLSYLMYPQVFLEYRQKYETFGDITLLDTPTFFNGIRQGETLEVQIERGKTL IIRLDEIGEPDIDGNRVLFFNLNGQRREVLVKDASIKSAVQVKQKAEPTNKEQIGATMSG SVLQVLVKRGDKVEKGQPLLITEAMKMETTIEARFAGTVDHIYVEEGEAISSGDLLLEVK EK >gi|308151759|gb|GL476263.1| GENE 270 280989 - 282113 1011 374 aa, chain + ## HITS:1 COG:lin2162 KEGG:ns NR:ns ## COG: lin2162 COG2340 # Protein_GI_number: 16801228 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Listeria innocua # 1 236 1 246 351 90 26.0 6e-18 MKRFWAFTAVFLTVLLIGYLEPVFFPAEKPTETAQSGRLSSAHTAVPHEELPASGYAAYI GKDVETFIRQFGNPKEKIKTGRTYELWTFGLTMNDYLEVNVRENKVIAIKAFNNDKMIEP FKIDMKLADLSDLMTIYSNFAFNFHHEAYDVELMEEDMNYRPLVAFDNGSFAVLFFNQRT GGLMAVNYVNKETLLTEMPYQLNEGSPLPVDITQSMTFDPVQSNQAIYVMNLVKQQENQA AFSVSTQSQKDAQTLYQTLANHTPTILSANRQAELLQTREEHTAIHPFHLTKDEFSLLVK TSKLSLREPASIFQEPVYDSTFTILSWFSDPQYDSYFAESETTELGVAFSNEGVLVLLEK RPENRQITESSEKL >gi|308151759|gb|GL476263.1| GENE 271 282110 - 282544 222 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 7 141 12 143 146 90 35 1e-16 MIVTEHLFAIEDQTECLISALLESDAVQNYKETKKAMYASAEVAQLQKAFLEAKSAFERV EAYGIHAPDFREKQRALRKAKRALDLNEIVANYRFAETNVQTLLDTIGLKIAQLISEDIK VDAGNPFFERGKKHSGCGGSCHAS >gi|308151759|gb|GL476263.1| GENE 272 282534 - 282884 440 116 aa, chain + ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 91 6 83 92 69 44.0 1e-12 MQAKEEKEFTLQERRCLIVWVYTLKPLKQLRRYGLIHYVSRKMKYVVIYMNEENIESNME KINQLHFVRSVDKSYRPDIEMNFAEKIGTKAAYQEQEDDGYVVEELSTEIRLAENV >gi|308151759|gb|GL476263.1| GENE 273 282983 - 283537 727 184 aa, chain + ## HITS:1 COG:L22498 KEGG:ns NR:ns ## COG: L22498 COG0742 # Protein_GI_number: 15674145 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Lactococcus lactis # 1 180 10 186 188 214 61.0 5e-56 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAV SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLEKTRETVYGITQVTIY RQEA >gi|308151759|gb|GL476263.1| GENE 274 283539 - 284030 334 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 158 3 158 164 133 43 1e-29 MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINTSKQTLFTPEEKKYLIEEATK EMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLL AEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS >gi|308151759|gb|GL476263.1| GENE 275 284035 - 285087 471 350 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 346 1 343 350 186 33 1e-45 MNKKTEKFSFKSLIPMVLALLLIGLFIVPIPYYIEGPGTTENLKEFVTVDGKKDTQSGAF YLTTVGIRSATIFSAIKANFSDFQEVMSKKELMGDSSNSEYNRIQQYYMDSSKNAAIEQA LKLAKVPYEMKFKGVYVLAMEDNSSFKGKIEVGDTVTGVDGKSFKSSEELMNYIKAQKVN QKVTVQFIQDGKAKEATGKLIELPTDKKAGIGIGLTDHTEIDSSIPVSIEAGDIGGPSAG LMFTLQTYEQLSHKDLRKGHEIAGTGTMNSQGIVGRIGGIDKKVVTASENGAEIFFAPDD EITSEMKKVEPKIKSNYQEAQEAAKKIGTKMKIVPVKTVQDALNYLEKLK >gi|308151759|gb|GL476263.1| GENE 276 285183 - 285827 652 214 aa, chain + ## HITS:1 COG:lin1519 KEGG:ns NR:ns ## COG: lin1519 COG1555 # Protein_GI_number: 16800587 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Listeria innocua # 67 212 57 199 200 130 47.0 1e-30 MDWLKQLPKKWLLLGSGASIVILITLLVGIYLMVNKEPRVDTTMWEETSLTTTAEVATDA TKERAETMIYVDIKGAVKVPGIYQLKTQQRIWDALALAEGVNEEADTAQVNYAQKVKDQM IIYVPKKGEAVAQSLETLQESAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFR DEQGPFKTVEELKNVPGIGEKTVERLKDMLTVTG >gi|308151759|gb|GL476263.1| GENE 277 285950 - 286453 469 167 aa, chain + ## HITS:1 COG:BH1334 KEGG:ns NR:ns ## COG: BH1334 COG2131 # Protein_GI_number: 15613897 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Bacillus halodurans # 1 141 1 141 188 235 75.0 2e-62 MERIPWDQYFMGQSVLLSLRSTCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEGCYV VDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKMILQAGIKKIYYLKDYR NDAYALNLIEQVGATVEKVTLVPKYFAELQWGEEFATLEDNPSSAEE >gi|308151759|gb|GL476263.1| GENE 278 286776 - 288752 1302 658 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 390 642 23 276 282 219 44.0 1e-56 MAFYQLKSVKEKQQWQQLTTTIQATAVGILDSPQGQTNKNGFNYQLFLKNQGIEAILFIE EIGQLRPFFSWRFKEIISGWRKWAMVHIQKNFAETSAMYMNALLLGFRNEEFAEISDKFS ALGILHLFSLSGMHVSFFLRLFRLLMLRIARRTQESYFLWQCGFSLIYAGLTGFSVSVMR ALLQTNLNTFNRRFNWQVPALDCWSLTLLVHLIVQPTLFFSVGGQFSYLLFFVLLFLEQT LVGYSSPFIKNCLGSFLLAVASLPILVQSFYEWPLLGSFLTFLLLPIFERFLLPLLTLSF FLVIIMPARYLAALLEPLFLTMNGLFEWVLVHLNPKLTIGYLNSWIQISLLLLIGLSMIY LADKSKKILFSIGLLIVLINSKYLSPIGIVAMIDVGQGDSLFIQAPFHRKNTLIDTGGRL SFDKEAWRQRKNSRSGAEYSVIPFLKSQGVKRLDEVIITHAHEDHFGDLLAIAQKVPISV LYFPKGAAEANFSFRQVLKQLQKSGTDCRPILAPKRINGPVSFQILSPNKSSIGGNNDSI VFSTQLGGRHFLFTGDLEAEGEEQVLARYPQLKIDILKVGHHGSKTSSTKRFIKQLNPRE ALISAGLNNRFKHPHQETLATLEEQKINYYRTDLQGMIYYQWLPWQGLSKAKFVKEQD >gi|308151759|gb|GL476263.1| GENE 279 288810 - 289838 1181 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 243 43.0 5e-64 MELQKALKEVREQKIAPVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPL SAAIAEAETIPFFGDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMA SYEKLDERKKITKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTD LNLSKIMGELQKLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYE DLLLQGEETIKLNAILLNQIRLFLQTKILAKMGYQQANIADTLKVHPYRVKLALQQVRRF ELSRLERLYDELVENDYRMKTGQMDKELLFQLFILKLTAEAK >gi|308151759|gb|GL476263.1| GENE 280 289890 - 290831 1248 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 398 61.0 1e-111 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIF SPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSN VRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQA EVYTHIAQTYDPNGIGLHYPSMYQDLIKNHRLTEIDYINGAVWRKGQKYKVATPFCAMLT QLVHGKEELLGAK >gi|308151759|gb|GL476263.1| GENE 281 291021 - 291557 461 178 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 3 173 5 172 172 165 49.0 5e-41 MTKEKFCRESRVIQTHRVFPFDLNPFGALFGGKLMSLIDDAASISVSRHCRRGAVTASLD NLNFLKPLKENHSVCVETFVSGVHHKSMEVFVKVVGEDLTTGVRYLAATCFTTFVAIPSH MNPESDFQLAAVVPETAEEKLICSNYETRRQQRLALREETKLFSQHLTTDLPWIDSPL >gi|308151759|gb|GL476263.1| GENE 282 291644 - 291958 509 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 [Enterococcus faecalis TX0104] # 1 104 1 104 104 200 100 5e-50 MITVELHWLTSVKPKSSEVKQMPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAV AAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK >gi|308151759|gb|GL476263.1| GENE 283 292127 - 293140 966 337 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 17 326 20 324 335 196 39.0 6e-50 MSIALLVTITLVMGVIFVNGWTDAPNAIATAVSTRVLKPNVAIWMAVVMNFLGALVMTFF NAQVAETISNIVSFDANGNASQVALAASLFSIVVWAVAAWYFGIPTSESHALIAGLTGSA MALGGLGAVNGSEWIKVLVGLVVSTVMGFGGGYLIAKLVVKAFSAVPRRKANKFFTVGQA FGAGANAFLHGAQDGQKFMGVFMLVLFYNNLVEKTGGGFVIPLWVMVLCSITMGIGTSVG GMRIIKSVGMDMVKLERYQGFTADLSTAICLFLASAFGIPVSTTHTKTTAIMGVGASKRI SSVDWRIVKEMLIAWILTFPGCGLIAYVMSKLFIAIF >gi|308151759|gb|GL476263.1| GENE 284 293153 - 293776 853 207 aa, chain + ## HITS:1 COG:RSc1312 KEGG:ns NR:ns ## COG: RSc1312 COG1392 # Protein_GI_number: 17546031 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Ralstonia solanacearum # 5 206 11 207 208 98 32.0 6e-21 MARKKQFDYFGELNQLATNAYEAAKVLQEIVDNYSLENLVKKSEAIHQLEKENDEIVRKI LNELYISFITPIDREDIVDITDHLDNIIDSINSLSYLLDHLVVEEMIAPALELTAYIVKA TEGVKSATKEFAKFKNSKTLVSLIDEVNTIESQGDKLYSSAMKDLMTNEKDLLKVIKWKD VYDQLERTINDCESAVNIIVGIVIKNT >gi|308151759|gb|GL476263.1| GENE 285 293795 - 294472 578 225 aa, chain + ## HITS:1 COG:lin0339 KEGG:ns NR:ns ## COG: lin0339 COG3394 # Protein_GI_number: 16799416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 225 1 225 261 348 72.0 4e-96 MVKVIVDADDFGMSEAINHGIIKSYVDGLTTSTLLMPNLPTAEHAVALAKNYPGLFVGQH TNFLLGKPCADPCMIPSLVDEQGNFHRSSYYRQQKQVTFVYEEVRLETIAQLTRFKELTG HYPEHFDCHSIGDEVVDQVFLELAEEYGLHTTLKYSGEKEYPPQQGYFQVTHLLESGALS YIHEGVSVENFLKDDFGLLRMPESAIAEMHFDVGYLDQFVLDNSS >gi|308151759|gb|GL476263.1| GENE 286 294620 - 295450 874 276 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 8 275 5 279 284 298 60.0 9e-81 MLFANLWKAIILGIIEGITEWLPISSTGHLILVDEFIKLDLSKDFMEMFNVVIQLGAIMA VVILYFHKLNPFSPKKNGEEKKDTWILWSKVLVACLPAAVIGLKFDDYLDAHFYNFLTVS IMLIVYGIAFIIIEKRNKNVAPKCTNLKDFTYKAALIVGAFQVLALIPGTSRSGATILGA ILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKGNTFGSEEIIILLIGSIVAFVVSI IAIKFLLNYLKKNDFTVFGWYRVILGAILIGYWLFS >gi|308151759|gb|GL476263.1| GENE 287 295632 - 296126 681 164 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 159 5 147 151 138 51.0 6e-33 MFGFLKKKNEVVENNTMYAVANGTIIPISEVNDPVFSQKMMGDGYAVVPENGEIYAPIEG EVLSVFQTKHAIGLKMTNGLEILLHMGIDTVELNGAPFTIKVKEGDQVTADTVVAIADLE AIKAAGKGTEMVVIITNMDKVAQFSLEKTGVVTAGTPVGSATAN >gi|308151759|gb|GL476263.1| GENE 288 296279 - 297388 1093 369 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 357 1 349 353 327 47.0 2e-89 MYGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEK MKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTI TLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQ TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPTISERTMAQFGYYHQTNQF LLEVAPSESRYLKRILGTHTNRLDAARDVLRSELSRTSEMFRKDEIATIESEQTEARPVG TVTIDNEKYGRYMGEIQVTLVDLPKDEKVNTITRIIEKDQTILPLIKAGNQFTLVTEGTI ENEFRKLNN >gi|308151759|gb|GL476263.1| GENE 289 297363 - 298253 1181 296 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 296 2 297 297 406 73.0 1e-113 MNLENLTTERRNENTMGLNEMSVKEALQKMNQEDQKVAMAVGQELAAIEPVVEAIIKSFN QGGRLIYMGAGTSGRLGVLDAAECVPTFGVEPEMVQGLIAGGQKAMTVAVEGAEDSKELG RQDLVDLKLSANDIVVGIAASGRTPYVIGGLEYATTVGAATATVACNKNAEISKYAQMPI EVDAGPEFLTGSTRLKSGTAQKLILNMLSTISMIGIGKVYNNLMVDVKPTNEKLVERSKR IIMEATGCSYEVAELKFVEAEENVKLAIVMILTDSTKEEATQKLIDGNQFIKNTLN >gi|308151759|gb|GL476263.1| GENE 290 298276 - 299730 1991 484 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 463 1 348 348 429 72.0 1e-120 MAEERIKRIADGIYKEVGGQENVDKVIHCMTRVRMDIRDYDKVDIEGLKKIDGVMGVVED DTLQVVVGPGTVNKVAQEMVDQAGVKLGEPFNHGTTTDASAGKSGKDLVEEKAAQMKAQQ KAKQNNTSPFKKVLKAISSIFVPMIPAFVGAGIIGGIAAVMSNLVVAGDISASWQQYIDV LNIIKNGIFAYLALYTGINSASVFGATPALGGVIGAVTMLTGMNPDAPISNIFTGGTLSA GQGGIIGVIFAVWLLSLLEKQLHKIVPESIDIIVTPTISLLVIGLATIFLIMPVAGAISN GLVGIINVVLEKGGMVAGFTLGLTFLPMVMFGLHQILTPIHIEMINQTGMTLLLPILAMA GAGQVGAALALWIRCKSDKKLVEMIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGG IGGAVIGAFGNVGAIAIGPSGVALIPLIANNQWLAYVLGLLAAYAGGFVATLFFGIPKDM QTTK >gi|308151759|gb|GL476263.1| GENE 291 299818 - 300666 1060 282 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 282 2 282 283 199 40.0 4e-51 MQQNIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSM DVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAV NEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSV FIVISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAA TVSLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE >gi|308151759|gb|GL476263.1| GENE 292 300717 - 301427 888 236 aa, chain - ## HITS:1 COG:SPy1766 KEGG:ns NR:ns ## COG: SPy1766 COG0406 # Protein_GI_number: 15675611 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 5 233 4 231 235 254 57.0 7e-68 MTEATTLYIIRHGKTMFNTIGRTQGWSDTPLTKQGEEGIYHLGLGLRDIDFKEAYSSDSG RAMQTAQIILQEHQNHQKIPYLTDKRIREWCFGSLDGGYDGELWGVVPRILAFKSYEDMM TTKITYRELANAIIEADTADWAEPYEVIRDRVWSGFEDIAHHREKNGGGKVMVVSHGLTI SFLLSLIDASLPMQMALENGSVTTLTYEKGTFTIQGINDSSYIEKGKKIAEKRRLL >gi|308151759|gb|GL476263.1| GENE 293 301468 - 302094 742 208 aa, chain - ## HITS:1 COG:lin2270 KEGG:ns NR:ns ## COG: lin2270 COG0491 # Protein_GI_number: 16801334 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Listeria innocua # 1 208 1 205 205 283 66.0 2e-76 MIQIEQIRTGVIQENCYLVYNEEALLIIDPGAEGAKLIQEITRLGKKPAAILLTHTHYDH IGAVEELRHHYQIPVYVSPLEQAWLSNPILNLSGLGRHDDIANIIVQPAEHEFKLTDYEI GGMKFSVVPTPGHSIGSVSFVFDDFVVVGDALFKGSIGRTDLHTGDMQQLLHSITTYLFT LPEEFPVYPGHGDATTIQHEKATNPFFN >gi|308151759|gb|GL476263.1| GENE 294 302314 - 303699 1678 461 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 54 461 58 463 527 268 36.0 1e-71 MFHFVIKGTGFSSKNLQEIKVYEETLFCIDEAGVIQEIIEPDAEAYETVLAEQKEAQRFQ ELPQDSYLLPGFVDLHVHAPQWAQSGTALDIPLYEWLNTYTFPLESKFADLAFAQQVYDE LVTQLLANGTTTALYFATIHYEASRRLAEICAEKGQRGLIGKVVMDDLNENPEYYRDQTT QQALEETERFIQEIQTLAQQTKQGVYPVVTPRFIPSCTEEALKGLGELAAKYQVHVQSHC SESDWEHQFVQERFGKNDAQALNDFGLLTEKAVMAHAGFLEEADMNLFHETGTAVAHCPI SNAYFGNAVTPIAKLVHQHQVEVGLGSDLSGGFSPSLFDNLKQAVISSRMLEDGVDATKK PEVRGVKTARITVNEAFYLATAGGGQALSLPIGKLEKGYAWDVQIINTSLSQARIPKNPG ESLLDIFQKILYLARPENIREVWVQGEKVHDKNLMSATKGV >gi|308151759|gb|GL476263.1| GENE 295 303703 - 305034 351 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 27 438 19 419 447 139 28 1e-31 MSEKKQNNLHLTVGPEDSVSFGQATMLGIQHVLAMDVYVVPVIIASIIGISTAQTSSLIQ ATFIAAGLATIIQSHFCMRLPVAQGPSFIPIGAIAGIYFANNQQGNGWGAVLGASLVGAI VVIILGFTGIFNRLITKFVPPIVGGTIIFVVGLSLMPVALSDNIYHAKGELGQNILLAFI AAGTLIFFALLGSALKKGRIFRVSSVILALLFGSIAAQLLGVLDLSAVSEAAWFSLPQLP LVNFSFQFDWSAIATMLVIYLVLMAETTGTWFAVSHVVAEPLTEEKINRGVIGEGLGCLV SSFIGGTPVTSYSTNAGIISITGVASRKVFVAAGAWFVLFGLSGKLSTLISAIPAPVIGG GFVVVCGIISVSGMKVMSDVTIHEKEMYVIAVPIIMTLALTLLPKEFLETLPQFLQYLFS SPVATASIVAILLQAILPNVQEG >gi|308151759|gb|GL476263.1| GENE 296 305176 - 306153 1334 325 aa, chain + ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 581 86.0 1e-166 MKVFDYEDVQLIPNKCIVNSRSECDTTVTLGKHSFKMPVVPANMQTIIDETIAETLAENG YFYIMHRFDEEARVPFIKKMQQKGLITSISVGVKEGEYAFVETLAREGLVPDYVTIDIAH GHSNAVINMIQHLKKTLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSVRFGATMVMIGSLFAGHEESPG ETKVEDGVVYKEYFGSASEFQKGEKKNVEGKKIWLRHKGKLADTLVEMQQDLQSSISYAG GRDLEAIRKVDYVIVKNSIFNGDTI >gi|308151759|gb|GL476263.1| GENE 297 306315 - 306647 209 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 85 41 3e-15 MIGSDAIRGYNDTFILSILQSGASYGYAISKRIREISNEQYSIKETTLYSAFTRLEKNGY IESFPGEVTHGKKRTYYQITHAGERYLEEKLLEWEVTKDVVEAFVKEMGK >gi|308151759|gb|GL476263.1| GENE 298 306644 - 307672 1053 342 aa, chain + ## HITS:1 COG:no KEGG:EF2427 NR:ns ## KEGG: EF2427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 342 1 342 342 650 98.0 0 MKIIEEFIDSLFSGVVETSETKQLKADLLANAEDRYEDLLSQGKSENEAIGTIISEFGTI DELMEELNLENKQVDETNDSMNGLPEISVEEGLDYLAVQRKGAIQIGLGVVAIMVGVGLL VGMRGVLSNGLGLVCLFIGVAIGVPLFIVAGNRFVAMDKQLGQRLIPIKLKKEVAQREQS FQRSFIFCMAAGVVFCILGLIPVVVFSSGLHLMMRRSMHQMMGGQYYNGTMGISWLFFLV SVGVFLFIFGGVIKGSFNKLLNETYFYSEHVGHPDFAPQQTKTEEGPVGNPVGAIIASVY WPLVVALYLFISFVLGDWRFSWLIFMFAGIFYNTIQAFLHKH >gi|308151759|gb|GL476263.1| GENE 299 307807 - 309258 1383 483 aa, chain + ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 1 458 1 461 466 401 46.0 1e-111 MWQLKKEQNVPIYRSIMEMIVQKIQTGELLPGEKIPSERKLAEYLSVNRSTVVHALDELV DLGWIVRKRGSGTIVNEGKWGVMMTPRTDWHRYLEQNVFKQVHPLVAEIELRAKQNLPTD LDMYTGELPLDLIPSFDFPALNWKQFLKEEAQDELGYLPLRKEIQAITATEYQLHLPSES LLLTSGAQQALFLVLQVLLRQGDSVAVEDPSFFYALPIFQAAGVRLFGVPMTEEGIDLEA LEQTIRQHRIKMVMVNPSFQNPTGTVMPLRKREQLVKVCQTYQVPILEDDVFGQLSFIPK TEIPPLKKLDPDNVLYIGSLSKILGSTTKIGWLSAPASVTKQIAEARKMMDVSLSIFPQM LAKMAIEDPSFSEKITLLNKQVEQRATAVYQVFKSLPEWEVSPVKGGFYLWAHWRQGALK PEEWQGFLREGVLVAPSVAFSEKRGSIRLNCSRISPEEMPLFCERMVRITRQLSENRQTK IEQ >gi|308151759|gb|GL476263.1| GENE 300 309379 - 311103 2374 574 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 570 1 568 572 715 61.0 0 MSWEQVYQQWLNEENIPENLKNELKDLNTDPEKCEDAFYAPLEFGTAGMRGILGAGINRM NIFTVRQATEGLARFMDTQDPETKRRGVAIAYDSRHMSPEFAMEAAKTLAKHDIPSFVFE SLRPTPELSFAVRYFKAFAGIMITASHNPAAYNGYKVYGEDGGQMPPADADALTKYVRSI ENPLKIDVLSDEEVAHSGLINIVGEEVDNAYLKEIKTVTINQELINEMGKELKLVYTPLH GTGKMLGEKALKQAGFEKFVLVPEQAVADPDFTTVKSPNPEEHSAFEYAIRLGEKEGADL LIATDPDADRLGAAVRMPNGDYQVLTGNQLGSIMIHYILEAHQQAGTLPQNAAVLKSIVS SELATAIAEKYNTKMFNVLTGFKFIAEKIQQYEEDHSQTFMFGFEESYGYLVKPFVRDKD AIQALVLLAEVAAFYKKQGKTLYDGLQDIFEEFGYFEEKTISVTMSGIEGSGKIKALMAK CREQAPTEFAGIQVVQTEDFKELTRTFADGQTEQLQTPPSDVLKYHLEDGSWIAIRPSGT EPKIKFYLATKATSSSEASEKIAAFEAVVNELTK >gi|308151759|gb|GL476263.1| GENE 301 311209 - 311991 935 260 aa, chain + ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 256 265 171 39.0 1e-42 MKIGFIGAGSMGGAMIKGLLKAEAVKKEHLYVKGGSSGTAEALQKEWGFQLVTDYALFQE CKVIFIATGAKVVLPVLQELAPHFSNESLLISVATGHTIQEAQMALGNKEAKVVHAIPNT PVSVNQGVIGVALAPTIEGQTKDLVMELLATLGLVKEIREAQLETFGTVAGCSPAFVDIF MEALGDAAVLEGLPRDLSYEIVAQMIKGTATLALETKKHPGALKDEVTSPGGSTIRGVVA LEKNGFRYAVMDAVQQANHE >gi|308151759|gb|GL476263.1| GENE 302 312129 - 312416 347 95 aa, chain + ## HITS:1 COG:BS_yozA KEGG:ns NR:ns ## COG: BS_yozA COG0640 # Protein_GI_number: 16078972 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 94 17 106 107 86 52.0 1e-17 MKQMEEIKQVSQLYKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDS RVVKARREGKTIFYTLDDHHVIDILNQTFEHIEHR >gi|308151759|gb|GL476263.1| GENE 303 312468 - 313760 1425 430 aa, chain + ## HITS:1 COG:lin2691 KEGG:ns NR:ns ## COG: lin2691 COG0460 # Protein_GI_number: 16801752 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Listeria innocua # 1 427 1 426 428 482 58.0 1e-136 MKDTLKIGLLGLGTVGTGVLTLLKEHQEKISQVTGMNVVIEKAFVRNLETKQAQAEEYGL SLTTSIDDILEDKEIQIVVELMGTIEPAKTYIMKALEKGKHIVTANKDLLAQHGSELVAL AQKHHCDLYYEASVAGGIPILRTIANSLAADNIQQVLGIVNGTTNYMLTQMVSADKSYEE ALAEAQALGFAEADPTNDVDGIDAAYKMVILSQFAFGMNVSLPQVDIRGIRGLSLDDVAM AKQLGYEIKLIGSAEQNENSISVEVAPMLVNQKHPIASVRNEYNAVFIKSAGVGESMYYG PGAGAKPTATSVVSDLITIAKNIRLATTGHMFNSYQHKTQLTSSENVFGQYYFSLDVPDT PGQFLQLTQLMTKAEVSFDQLVQQKSDGQRARIVAITHQISKAQMQQVVTAIQNTEAFQL LNVMKVIGDE >gi|308151759|gb|GL476263.1| GENE 304 313763 - 314818 1498 351 aa, chain + ## HITS:1 COG:lin2690 KEGG:ns NR:ns ## COG: lin2690 COG0498 # Protein_GI_number: 16801751 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Listeria innocua # 1 348 1 349 351 535 82.0 1e-152 MYEGLLKQYQAYLPVTEKTPMISLAEGNTPLIPLPNLSKELGIQLYGKYEGLNPTGSFKD RGMVMAVAKAVEEGAKAIVCASTGNTSAAAAAYATRAGIKAYVVIPEGKIALGKLAQAIM YGADIISIPGNFDEALKAVREIAKTEAVALVNSVNPYRLEGQKTAAFEVCEQLGQAPDVL AIPVGNAGNISAYWKGFKEWHEKQGTTLPRMHGFEAEGAAAIVKGQVIEQPETVATAIRI GNPASWQLAEQARDESGGFIDAVTDQEILTAYRKIAAQDGVFIEPGSAASLAGVIQHVKS GKIKAGETVVAVFTGNGLKDPDTAMETEVTISKMSDVEEMRLHLRKGVATL >gi|308151759|gb|GL476263.1| GENE 305 314815 - 315678 930 287 aa, chain + ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 287 288 334 56.0 1e-91 MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTMGEEIPTNEENLLIQTA LKITPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEG HPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLAYK EAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQKGAYGS FLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF >gi|308151759|gb|GL476263.1| GENE 306 315721 - 316578 802 285 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 266 10 264 270 227 43.0 2e-59 MTIFEEKKCVTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDA KKAEAMVLHTIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHL NENYFKRIEAMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPL IPEAHLPKQLFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFA NDLYQKLGCIVIDVASLSIEETASMILNALNLEDHSYYSTETSED >gi|308151759|gb|GL476263.1| GENE 307 316683 - 317117 425 144 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 7 141 2 135 145 135 47.0 2e-32 MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDT VYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEE QLKGCSIEGHRFEILGRCADCCEK >gi|308151759|gb|GL476263.1| GENE 308 317220 - 317459 400 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 [Enterococcus faecalis TX0104] # 1 79 1 79 79 158 98 2e-37 MWVFPTNKKNGYFLSSEGGNNMSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYE KPSVKRKKKSEAARKRKKF >gi|308151759|gb|GL476263.1| GENE 309 317485 - 317934 420 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 166 55 1e-39 MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQR KDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGK VMGAMMPKVKGKADGNQVNAIVKELLQEN >gi|308151759|gb|GL476263.1| GENE 310 318117 - 319091 1280 324 aa, chain + ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 317 2 314 322 413 65.0 1e-115 MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELV ASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVG QKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFL PGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEA QNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEA SDVVRHPVVAQIIQAYEKEQQKHS >gi|308151759|gb|GL476263.1| GENE 311 319120 - 321318 994 732 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 20 730 26 748 750 387 33 1e-106 MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIE NTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAK KEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLM LVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEE LRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQ VEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPL ILNHFVNRRSGIIVAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQ VFPALMWVVVFPVFMAVVLMIYQGMSLTDGKTWTALICASAGTVLSFLATMGLHPYIELL VTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACY YHDIGKIKHANFFVENLPAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDI CRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHP TNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEA EEMKDEQEKRDD >gi|308151759|gb|GL476263.1| GENE 312 321318 - 321797 720 159 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 159 4 161 161 175 64.0 3e-44 MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKD MPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMG FLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR >gi|308151759|gb|GL476263.1| GENE 313 321781 - 322182 381 133 aa, chain + ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 4 128 25 149 151 124 52.0 6e-29 MALKDEQTGKNKHFINSLEFAWQGIKTVFREERNMRKHVAFGVTAIVFGFLFSLTLAEWL WLLLAVFLVWLAEIINTIFENVVDMFTDFHFHPIGKKVKDMAAGAVLLTAGFAVLVGLIL FVPKILQIIQMWK >gi|308151759|gb|GL476263.1| GENE 314 322196 - 323098 1233 300 aa, chain + ## HITS:1 COG:SP0969 KEGG:ns NR:ns ## COG: SP0969 COG1159 # Protein_GI_number: 15900846 # Func_class: R General function prediction only # Function: GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 300 4 299 299 424 73.0 1e-119 MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFI DTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYL IINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPD DQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQ KGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY >gi|308151759|gb|GL476263.1| GENE 315 323181 - 323966 719 261 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 253 1 251 251 240 45.0 2e-63 MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYI GNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMA LSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWH LDEQRYHADPRAIHFIRLFSQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKK FIDQMKTWENTLKIPPRKKEE >gi|308151759|gb|GL476263.1| GENE 316 324008 - 325093 762 361 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_1706 NR:ns ## KEGG: SSUBM407_1706 # Name: not_defined # Def: membrane protein # Organism: S.suis_BM407 # Pathway: not_defined # 11 361 29 388 396 254 45.0 5e-66 MVSILYVLIVLVCFVAPITLTLYNVYFLFKRSHESRFEPAIERWTWSLGIILSLVFVRFM YMFKGDWQEVLINGATHNPIASEEQPVILWLIVIGLTGYFLLKFSKEKRLPPLVMVFAIA GTYIGIFVAAIWIVQLSNHILVVIFLGLPAFNFILLALRTIKEQIVAWQGDHTRVEKTGI LAKVLMNSLNWWWLAFIFMLPILGIFLAVLILFGQRPDAMVRAWTETSDWALSQKISPPN VQVDEHYLCTVAACGHRNFVKPQRMGIRHNHQVVVNRQLCVANAFEQILEEKVPKTHRFI RKNYDTYGFPIAKKIHSPYVADLVYLMMKPAEYFFLLVLYLVDIKPENRIALQYITKPKN F >gi|308151759|gb|GL476263.1| GENE 317 325610 - 325795 81 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMNSIKIIPFYKIVSLYPFLNLHSRSKANPYVYKKYSKEENNEKQVNRTRNDFNLAKILV I >gi|308151759|gb|GL476263.1| GENE 318 325734 - 326642 1164 302 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 302 305 533 84.0 1e-151 MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWE NPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYD LEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQHVSKE AE >gi|308151759|gb|GL476263.1| GENE 319 326644 - 328728 2791 694 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 694 1 688 688 671 48.0 0 MAKDLLLEIGLEEMPAHVVTPSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAI PEKQADVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKF TKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVIPFKVLDVTT GQTSRGHRFLGDDVTFQHANEYEAKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALD EELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAV RNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEK MQRVALIAQIIGRKVGLSEEELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQG EKPAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALR RQTYGVIRIIEDKGWTFPLVQLQTEVDEAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLL MTKNVRHDIIDAVVSAEQADLSKLFASANILKSRFEDQDFKPSMEALTRVINLAKKGQEL LGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMV MVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK >gi|308151759|gb|GL476263.1| GENE 320 328768 - 328959 276 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553937|ref|ZP_03983984.1| ## NR: gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis AR01/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis ARO1/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] Bacterial RNA polymerase, alpha chain C terminal domain. [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX2137] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX4244] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX1302] conserved domain protein [Enterococcus faecalis TX1341] conserved domain protein [Enterococcus faecalis TX1342] conserved domain protein [Enterococcus faecalis TX1346] conserved domain protein [Enterococcus faecalis TX0309B] conserved domain protein [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX0309A] hypothetical protein OG1RF_11838 [Enterococcus faecalis OG1RF] hypothetical protein HMPREF9520_02392 [Enterococcus faecalis TX1467] # 1 63 1 63 63 108 100.0 1e-22 MLETTFEQILTQLSKPAVRALTNEKIDSVDELYARGRKALLSLHGFGPKSIRTIEEMTGK ELK >gi|308151759|gb|GL476263.1| GENE 321 328993 - 329925 1077 310 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 310 5 307 307 261 46.0 1e-69 MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWN YGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAA QAELQKIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMI LVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIF TCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNK GRNAGKQKRK >gi|308151759|gb|GL476263.1| GENE 322 330092 - 330367 416 91 aa, chain - ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 92 93 76 47.0 1e-14 MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVKNEDDGSVSITAIAPEDIMETFIKKI KDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ >gi|308151759|gb|GL476263.1| GENE 323 330474 - 331250 206 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 252 3 240 255 84 27 7e-15 MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQE WGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQ DPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFK KQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAES LNVAIAAGVLMFYFENNQ >gi|308151759|gb|GL476263.1| GENE 324 331270 - 331707 412 145 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 142 4 140 142 94 37.0 6e-20 MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVHAALPKATLILAEEE GQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDLLSLAVYRENQAAYAFYQK QGFVQQKRTIDETGNEECHLVWQAQ >gi|308151759|gb|GL476263.1| GENE 325 331891 - 332676 1336 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 [Enterococcus faecalis V583] # 1 261 1 261 261 519 100 1e-146 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNV AEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAM EEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLN IPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE >gi|308151759|gb|GL476263.1| GENE 326 332782 - 333663 582 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 228 44 2e-58 MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEG LANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGT IESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDV AMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIAL VDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN >gi|308151759|gb|GL476263.1| GENE 327 333924 - 334646 1036 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 358 76.0 5e-99 MVKPKYQRVVLKLSGEALAGEDGFGIKPPVIKEIVQEIKEVHELGIEMAIVVGGGNIWRG QIGAQMGMERAQADYMGMLATVMNALALQDTLENLGVPTRVQTSIEMRQIAEPYIRRRAE RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEVDADVILMAKNNVDGVYSADPRVDETAT KFEELTHLDVISKGLQVMDSTASSLSMDNDIPLVVFNLNEAGNIRRAILGENIGTTVRGK >gi|308151759|gb|GL476263.1| GENE 328 334650 - 335207 949 185 aa, chain + ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 1 185 1 185 185 213 70.0 2e-55 MSKEVLATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIP EARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE AENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQ ELLEV >gi|308151759|gb|GL476263.1| GENE 329 335577 - 336347 194 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 221 245 79 27 2e-13 MSVLEIKNLHVSIEDKKILKGVDLTINTGEIHAIMGPNGTGKSTLSAAIMGNPNYEVTEG EILFDGVNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAINAKRDEDNKMSVMQF LKKLDSKMELLNMPEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDA LKVVSKGVNEMRGENFGALIITHYQRLLNYITPDVVHIMMEGRVVKTGGADLAKRLETEG YAGISQELGIDYKEEA >gi|308151759|gb|GL476263.1| GENE 330 336362 - 337648 1570 428 aa, chain + ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 426 4 417 420 491 59.0 1e-139 MKKVNLMDYLDEVTAFSLEHEEPAWMTELRTTALKNADESELPHIDRVKFHRWPLLNVHM ESYVPSEGNVASFDQMKDNPLIVQQGSFHAFEQLPASLAEQGVIFTDIFTALQEHPELVK EYYMTKAVLPEEDKLTAAHAAFMNSGVFLYVPKNVVIEEPIESLFIQDSDSNQPFFKHVL IVADNHSEFSYLERFQSTGHHAEKASGNIVVEVIAKDGAKVKYSAVDQLGQTVTTYMNRR GYIMRDASVDWALGVMNDGDVVADFDSDLVGEGAHSEVKVVAISAGKQTQGIDTRVTNKA PHSIGHILQHGVIRERGTLTFNGIGHILKGAKGADAQQESRVLMLSDKARGDANPILLID ENEVTAGHAASVGRVDPEEMYYLMSRGLRKEEAERLVIRGFLGSVITAIPVKEVQNEFVE VIEGKLNA >gi|308151759|gb|GL476263.1| GENE 331 337645 - 338880 1547 411 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 408 408 582 68.0 1e-166 MMDAATIRQSFPILFQEVNDEPLVYLDNAATTQKPTAVLDVLRHYYETDNANVHRGVHTL AERATKDYESSREKVRQFIHAKETAEVLFTRGTTTSLNWIAKSYGDLAVTDGDEIVISYM EHHSNIIPWQQLAQRTGAILKYIDVTEDGFLDMASARQQITEKTKIVSIAHVSNVLGVIN PIEELTQLAHQNGAVMVVDGAQAVPHMPVDVQAIDADFYAFSGHKMCGPTGIGVLYGKRH LLEQMEPVEFGGEMIDFVHLQESTWKELPWKFEAGTPNIAGAIALGAAIDYLTEIGLEAI HQHEAALVHYVLPKLQAIEGLTIYGPQDPKDHTGVIAFNIEGLHPHDVATALDMEGVAVR AGHHCAQPLLNYLSVPATARASFYLYNTKEDADRLVEAIKATKEFFQHGTF >gi|308151759|gb|GL476263.1| GENE 332 338867 - 339334 655 155 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 146 159 164 57.0 7e-41 MALSKLDNLYRQVILDHSSHPHHHGTLDASSQTIELNNPTCGDVIELDVAIEDGVIKDIA FQGSGCSISTASASMMTDAVLGKTIAEATALAEDFSQLVQGNEVAEDEKLGDAAMLSGVA KFPARIKCATLAWKALEQAVANNGQGEAGHLHCEK >gi|308151759|gb|GL476263.1| GENE 333 339353 - 340747 1581 464 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 6 464 12 470 470 802 87.0 0 MSTVPELEEYKFGFHDDVEPVFSTGDGLTEDVVREISRVKGEPEWMLDFRLKSLEQFNKM PMQEWGPDLSDIDFSKIKYYQKPSDKPARDWDDVPDKIKETFEKIGIPEAERAYLAGASA QYESEVVYHNMKEEFEKLGIIFTDTDSALKEYPDLFKEYFSKLVPPTDNKLAALNSAVWS GGTFIYVPKGVRVDVPLQTYFRINAENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSL HAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKAYEGATVEWIDGNLGAKTTMKYPS VYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAPNTSSSIVSKSIAKDGGEVNYRGQVT FGKDSAGSISHIECDTIIMDEKSKSDTIPFNEIHNSQVSLEHEAKVSKISEEQLYYLMSR GLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG >gi|308151759|gb|GL476263.1| GENE 334 340842 - 341984 657 380 aa, chain - ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 3 377 2 357 359 174 32.0 2e-43 MAKISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGV KKKAPDMTFEDLYNEWITHQRTSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKV VDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELN NLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKV IIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIP NTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAH ITNNAPKKTGQDFADMMAHQ >gi|308151759|gb|GL476263.1| GENE 335 342023 - 342757 471 244 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69245858|ref|ZP_00603675.1| ## NR: gi|69245858|ref|ZP_00603675.1| Helix-turn-helix motif [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] helix-turn-helix domain-containing protein [Enterococcus faecalis T8] helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] DNA-binding protein [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecium C68] helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] hypothetical protein EfmE1162_2147 [Enterococcus faecium E1162] hypothetical protein EfmE1636_1232 [Enterococcus faecium E1636] hypothetical protein EfmU0317_0240 [Enterococcus faecium U0317] hypothetical protein HMPREF9521_02781 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9525_01047 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9527_01433 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9522_00287 [Enterococcus faecium TX0082] hypothetical protein HMPREF9523_00855 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9526_01755 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9524_01210 [Enterococcus faecium TX0133a01] Helix-turn-helix motif [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] helix-turn-helix domain-containing protein [Enterococcus faecalis T8] helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] helix-turn-helix domain-containing protein [Enterococcus faecium C68] helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] hypothetical protein EfmE1636_1232 [Enterococcus faecium E1636] hypothetical protein EfmU0317_0240 [Enterococcus faecium U0317] hypothetical protein EfmE1162_2147 [Enterococcus faecium E1162] Helix-turn-helix. [Enterococcus sp. 7L76] hypothetical protein HMPREF9521_02781 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9524_01210 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9526_01755 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9523_00855 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9527_01433 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9525_01047 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9522_00287 [Enterococcus faecium TX0082] hypothetical protein HMPREF9496_00894 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9511_00765 [Enterococcus faecalis TX0630] HTH DNA-binding protein, putative prophage repressor [Enterococcus faecalis 62] # 1 244 1 244 244 430 100.0 1e-119 MIKRPPINYLERKKILGTKIKAIRKSKKLTQPAFGLMINNGQLIDKKTIYEWEKGTYLPI PERLSRIADLGNMSIEELVCGNVEEYILGIILYRDSIVLDGITFPDKNLFQHLRQQFPPV HSNLDTWLDRYSKLEPEMQEFIANKTCNKVKNEKISLFNILKIEELFINAIVEEFDNNIL FLTSSIEELLERMVDEWLPIQLKDMSYPEEAVREITDNINKLEQTISSIGKKYTKKKMKG GDTI >gi|308151759|gb|GL476263.1| GENE 336 342989 - 343264 334 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307277177|ref|ZP_07558281.1| ## NR: gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family [Enterococcus faecalis TX2134] DNA binding domain, excisionase family [Enterococcus faecalis TX2134] # 1 91 17 107 107 145 100.0 7e-34 MSLQIIDSIVSIQVEQQVKEIITVLKPMLEDIISGVTLEYMDYQQASEYLGVSVGTIRKY VSQYGLPVIKIDTVIRFKKSDIDSFMERYKG >gi|308151759|gb|GL476263.1| GENE 337 343362 - 345359 1025 665 aa, chain + ## HITS:1 COG:no KEGG:Dred_0377 NR:ns ## KEGG: Dred_0377 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 6 450 1 492 679 92 23.0 7e-17 METSMINIPIYVDKEKLLEKPVTKKEKTDVRDRCLDNYREVTRDEFVEILNSSQSFIPSK TKNKGNDKESFVETRVIILDVDNTVKDEKGKVVDLSKDDSRYLSIEKVLSINLVHNSAFA IQKSIRYSENLEKYKIVFLLKEAITDYGKMVAVYEYLKKNIPGCDDNVNASNRMFFGGYK SDAVIIINEDNMLDITELPIDFTMTCSKNCQSDSGREYELVNETYFVKLIKNDDKEEMKQ WFKDCLFDSSDMSFNEIYERLLTIDMNKLLKSSKNLRCLFHNDHNPSASIFTSKTGHSIF YCHSSNCDISENFIGVVMLILKKDSRVETFNWLLENLDLYPTHFRKLKEESKVLFDTLES MKDKLFRTIRNYLEEMRRVYDVLLSDVNFFDDSKESVTCILSGEQLAKKMSSYYGKTYDI DKCNKLLSLMTFIGLIKKLDDEDVPLKMLEYLNRLKEEKALGNFNHKRSNVYRLDVFNTT SVIQKLNEDILPLLEKFHFTYQYFSYEWVKICFNEKEAKRVFPQNSRSELSKEKQLILDE AHEVLQGLSWQGTYLMTEKELINTVCERLRNVRDNSVKNALIENRGYFVKQGFTLERASK DIKKLYNVKASSSFLVYLAKGAGIDEVIKELILSGVELVPIYQFTSVTRDDGRRVRNRRD PIILN >gi|308151759|gb|GL476263.1| GENE 338 345435 - 345770 264 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307295149|ref|ZP_07574989.1| ## NR: gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] helix-turn-helix protein [Enterococcus faecalis TX0411] # 1 111 18 128 128 194 100.0 3e-48 MKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTP VSHFLDNVDIDYEEEFLALYRSLSTEDAIRTIDYMKLLKRQENERNQLLKD >gi|308151759|gb|GL476263.1| GENE 339 345899 - 346114 236 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|314938405|ref|ZP_07845696.1| ## NR: gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133a04] # 1 71 25 95 95 124 98.0 2e-27 MKKVSNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINE LFSDVFNKVNS >gi|308151759|gb|GL476263.1| GENE 340 346151 - 346516 391 121 aa, chain + ## HITS:1 COG:no KEGG:Bcell_3752 NR:ns ## KEGG: Bcell_3752 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 121 1 128 129 70 29.0 2e-11 MYCRKCGKEITNESKYCQFCGALQETDETTGTDTVKKSTEQTINEMKEQIVHGQETGKLY LIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEQMGTILMIAGVAGAIFGVLLGMSMS Y >gi|308151759|gb|GL476263.1| GENE 341 346553 - 346879 285 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292468|ref|ZP_07572319.1| ## NR: gi|307292468|ref|ZP_07572319.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] # 1 108 8 115 115 195 99.0 1e-48 MNKVNMNKKFVIIGIVVLAIIGIIFSRMTGSSGLEKSSVPLVTQILQEQYNLNRTCDDVT ITHDNGDNTYRAKATLDNGSAININVEYYPKKDRVYVEIPYTEVLMLN >gi|308151759|gb|GL476263.1| GENE 342 347033 - 347758 360 241 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312952953|ref|ZP_07771809.1| ## NR: gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] # 1 241 1 241 241 429 97.0 1e-118 MKKKKLLWICLAILLIIGGIEIFTTYRLKTNQPKQYVSDMLNIIEEIDSEMKAFSKTSMD LGERYDFKGFMEDKMDEVSSREIPEGTPKAVRDTKDTLLEAIDNVNTALLTNDVKLLEQG QLCFSIAQAIYTEFLDGNIKEKSLNEKLNSFVETYTAIPPTWKLVNEDKGITINTDTEIS TDAQSLSDLLANLTGISNAVTEQVGKDIPLRLLENGKKDYSVVFKNGQVTDYNEVFKKVI E >gi|308151759|gb|GL476263.1| GENE 343 348267 - 349859 1589 530 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 5 529 8 526 526 543 53.0 1e-154 MGAELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTV SKQTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFV QLASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEF LISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRFFSVFDPTMGSGSLMLNVRNYL THPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEMNLRNGDTLNKDWPTDEPYTFDAVVM NPPYSANWSADTTFLDDSRFNRYGKLAPKSKADFAFLLHGFYHLKETGTMAIVLPHGVLF RGAAEGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQNRDVLFIDASREFV KGKNQNKLSEENIQKILENYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPI DMVHVGNDIKKIRQEQQVLEKELLEAISSLQTTPENEAWLQGALEVFKHE >gi|308151759|gb|GL476263.1| GENE 344 349852 - 350070 314 72 aa, chain + ## HITS:1 COG:HP0790 KEGG:ns NR:ns ## COG: HP0790 COG0732 # Protein_GI_number: 15645409 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori 26695 # 19 69 245 295 431 63 56.0 7e-11 MSNDTRPEIRFPGFTEDWEERKLGELTESFDGKRVPIDSDLRISGKYPYYGATGIIDYVD DYIFNGGSVAKF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:53:09 2011 Seq name: gi|308151758|gb|GL476264.1| Enterococcus faecalis TX4000 genomic scaffold Scfld35, whole genome shotgun sequence Length of sequence - 64543 bp Number of predicted genes - 58, with homology - 58 Number of transcription units - 22, operones - 12 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 907 1145 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 930 - 989 10.5 - Term 964 - 1018 6.1 2 2 Op 1 3/0.000 - CDS 1032 - 2435 1657 ## COG0104 Adenylosuccinate synthase - Prom 2462 - 2521 5.3 - Term 2524 - 2556 2.5 3 2 Op 2 16/0.000 - CDS 2561 - 3928 1643 ## COG0305 Replicative DNA helicase - Prom 4117 - 4176 8.2 - Term 4152 - 4184 1.5 4 3 Op 1 9/0.000 - CDS 4201 - 4662 759 ## PROTEIN SUPPORTED gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 5 3 Op 2 . - CDS 4659 - 6635 785 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 - Prom 6720 - 6779 3.4 - Term 6786 - 6823 7.3 6 4 Op 1 21/0.000 - CDS 6841 - 7080 397 ## PROTEIN SUPPORTED gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 7 4 Op 2 24/0.000 - CDS 7106 - 7672 633 ## COG0629 Single-stranded DNA-binding protein 8 4 Op 3 . - CDS 7717 - 8019 510 ## PROTEIN SUPPORTED gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 - Prom 8098 - 8157 7.9 - Term 8141 - 8193 15.3 9 5 Op 1 24/0.000 - CDS 8194 - 10695 3033 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 10 5 Op 2 9/0.000 - CDS 10751 - 12700 2467 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 11 5 Op 3 9/0.000 - CDS 12697 - 13824 1137 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 12 5 Op 4 6/0.000 - CDS 13811 - 14056 303 ## COG2501 Uncharacterized conserved protein - Prom 14087 - 14146 10.2 - Term 14428 - 14469 -0.8 13 5 Op 5 16/0.000 - CDS 14636 - 15766 1530 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 15890 - 15949 4.1 14 5 Op 6 . - CDS 15968 - 17311 1360 ## COG0593 ATPase involved in DNA replication initiation + Prom 17726 - 17785 7.3 15 6 Tu 1 . + CDS 17834 - 17968 223 ## PROTEIN SUPPORTED gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 + Term 18007 - 18066 9.1 + Prom 18021 - 18080 4.4 16 7 Op 1 22/0.000 + CDS 18166 - 18528 317 ## COG0594 RNase P protein component 17 7 Op 2 16/0.000 + CDS 18528 - 19355 1035 ## COG0706 Preprotein translocase subunit YidC 18 7 Op 3 . + CDS 19370 - 20146 1122 ## COG1847 Predicted RNA-binding protein + Term 20164 - 20223 5.0 + Prom 20208 - 20267 8.4 19 8 Tu 1 . + CDS 20332 - 21054 653 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 21060 - 21101 5.5 - Term 21040 - 21097 7.4 20 9 Op 1 1/0.000 - CDS 21098 - 21793 808 ## COG1802 Transcriptional regulators - Prom 21831 - 21890 8.2 - Term 21871 - 21915 4.8 21 9 Op 2 . - CDS 21927 - 23324 1668 ## COG2851 H+/citrate symporter - Prom 23477 - 23536 7.5 + Prom 23640 - 23699 4.0 22 10 Op 1 . + CDS 23729 - 24091 389 ## EF3326 hypothetical protein 23 10 Op 2 9/0.000 + CDS 24075 - 24476 592 ## COG0511 Biotin carboxyl carrier protein 24 10 Op 3 . + CDS 24506 - 25621 1567 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 25 10 Op 4 . + CDS 25643 - 25777 256 ## EF3323 hypothetical protein 26 10 Op 5 5/0.000 + CDS 25792 - 26802 1009 ## COG3053 Citrate lyase synthetase 27 10 Op 6 6/0.000 + CDS 26808 - 27116 406 ## COG3052 Citrate lyase, gamma subunit 28 10 Op 7 6/0.000 + CDS 27104 - 27991 1135 ## COG2301 Citrate lyase beta subunit 29 10 Op 8 7/0.000 + CDS 27994 - 29526 1944 ## COG3051 Citrate lyase, alpha subunit 30 10 Op 9 1/0.000 + CDS 29507 - 30055 523 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 31 10 Op 10 . + CDS 30048 - 31445 1759 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase + Term 31482 - 31526 8.2 32 11 Op 1 . + CDS 31563 - 32735 1265 ## COG0281 Malic enzyme 33 11 Op 2 . + CDS 32742 - 33611 831 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 34 11 Op 3 . + CDS 33596 - 33769 103 ## gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 + Term 33808 - 33840 4.2 + Prom 34212 - 34271 7.6 35 12 Tu 1 . + CDS 34399 - 35637 1248 ## EF3314 cell wall surface anchor family protein + Prom 35730 - 35789 80.4 36 13 Op 1 . + CDS 35861 - 39340 4343 ## COG1404 Subtilisin-like serine proteases + Term 39362 - 39427 16.5 + Prom 39409 - 39468 6.9 37 13 Op 2 11/0.000 + CDS 39573 - 40970 1874 ## COG0486 Predicted GTPase 38 13 Op 3 . + CDS 40990 - 42888 2359 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 42898 - 42959 18.0 + Prom 42931 - 42990 8.1 39 14 Op 1 . + CDS 43060 - 43860 1055 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 40 14 Op 2 . + CDS 43876 - 45738 1536 ## COG3711 Transcriptional antiterminator 41 14 Op 3 . + CDS 45735 - 46220 545 ## EF3308 transcriptional regulator SrlR 42 14 Op 4 6/0.000 + CDS 46220 - 46774 595 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 43 14 Op 5 6/0.000 + CDS 46791 - 47786 1223 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 44 14 Op 6 . + CDS 47810 - 48166 438 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 45 14 Op 7 . + CDS 48194 - 48871 804 ## COG0176 Transaldolase + Term 48875 - 48924 12.1 + Prom 48971 - 49030 6.1 46 15 Tu 1 . + CDS 49072 - 50844 1651 ## COG4716 Myosin-crossreactive antigen + Term 50846 - 50891 9.4 + Prom 51171 - 51230 3.2 47 16 Tu 1 . + CDS 51255 - 52241 1035 ## EF3301 hypothetical protein + Term 52244 - 52288 12.1 + Prom 52327 - 52386 4.7 48 17 Op 1 15/0.000 + CDS 52489 - 53205 839 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 49 17 Op 2 25/0.000 + CDS 53221 - 53982 952 ## COG1192 ATPases involved in chromosome partitioning 50 17 Op 3 1/0.000 + CDS 53975 - 54865 1066 ## COG1475 Predicted transcriptional regulators + Prom 54883 - 54942 6.0 51 17 Op 4 4/0.000 + CDS 54983 - 55168 175 ## COG4481 Uncharacterized protein conserved in bacteria 52 17 Op 5 . + CDS 55225 - 56340 1597 ## COG0012 Predicted GTPase, probable translation factor + Term 56369 - 56394 -0.8 53 18 Tu 1 . + CDS 56449 - 57138 889 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 57198 - 57227 -0.3 54 19 Tu 1 . + CDS 57304 - 58986 1258 ## EF3294 hypothetical protein + Term 59016 - 59062 5.9 + Prom 59056 - 59115 8.6 55 20 Tu 1 . + CDS 59144 - 60625 2145 ## COG0516 IMP dehydrogenase/GMP reductase + Term 60656 - 60696 5.1 - Term 60740 - 60784 8.5 56 21 Tu 1 . - CDS 60794 - 62065 1698 ## COG0172 Seryl-tRNA synthetase - Prom 62091 - 62150 5.4 - Term 62116 - 62168 12.1 57 22 Op 1 40/0.000 - CDS 62400 - 63581 1214 ## COG0642 Signal transduction histidine kinase 58 22 Op 2 . - CDS 63571 - 64260 858 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 64294 - 64353 11.2 Predicted protein(s) >gi|308151758|gb|GL476264.1| GENE 1 38 - 907 1145 289 aa, chain - ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 289 1 288 289 209 38.0 6e-54 MNYQLVTDSCCDLPYTYLKENQVPFISMNIQIDGKEYRDDLGETFDYQNFLTAIKNGSMP TTSQVNVGRYNEFFRPFVEQGLPVIYLAFSSGLSGSYQSALQSVEMLKEEYDNVEIHIID TKAASLGQGMLVREAIRLQTDGHSLGEVVAYLEEQKMKLHSWVTVDDLKHLERGGRISKT AAALGGLMNIKPIIRVDAAGKLASVGKTRGRNKSLQKIAQETIQGIVEPMKQTLLIAYAG TKDDAEKVKELIEKEIEVNEILIYPLGPTITSHTGIGCIAVFSFGEKRK >gi|308151758|gb|GL476264.1| GENE 2 1032 - 2435 1657 467 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 38 467 1 430 430 753 85.0 0 MTETLLIVKEYSIFTLERDWFYWYNDSGQKNYERGVRMSSVVVVGTQWGDEGKGKITDFL SENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYKEKISVIGNGVVVNPKSLVKEL AYLKENNVATDNLRISDRAHVILPYHIKLDQLQEDAKGENKIGTTIKGIGPAYMDKAARV GIRIADLLDKEIFAERLQINLEEKNRQFVKMFDSEAIEFDDIFEEYYEYGQQIKQYVTDT SVILNDALDAGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVG VCKAYTSRVGDGPFPTELFDETGETIRRVGKEYGTTTGRPRRVGWFDSVVMRHSKRVSGI TNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWSEDITGC KTLADLPANARNYVHRISELVGVRISTFSVGPDRNQTNVLESVWAQI >gi|308151758|gb|GL476264.1| GENE 3 2561 - 3928 1643 455 aa, chain - ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 1 452 1 452 455 535 67.0 1e-152 MNELLQDRVPPQNIEAEQAVLGSIFLDADVLIEAMEYVEPKDFYRRSHQLIFQTMMTLSD RNEAIDVVTIKDRLEQENLLEDVGGLSYLSDLALAVPTAANVIYYAKIVEQKSLLRNLIQ TATEIVTKGFEQGEDVESILDDAERSILEVSEKRNRSGFLSISDVLNTTIANIDQLYQND EEITGLPTGYQALDKMTAGLQAEELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSL EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWQNLIIAMGSLSRANIYIDDTPGIKITE IRAKCRKLAQEKGNLGLILIDYLQLIEGTGKENRQQEVSDISRQLKKLAKELKVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRGEGEDGDHEPPEVDNVV EVIIEKNRSGARGTVELLFIKEYNKFSSLSPRTEF >gi|308151758|gb|GL476264.1| GENE 4 4201 - 4662 759 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 [Enterococcus faecalis TX0104] # 1 153 1 153 153 296 99 1e-79 MKEMKVIFLQDVKGKGKKGDVKEVPTGYAQNFLIKNGYAKEANKGSMSALAGQKKAQEKH EAEVLAQAKEMQAFLEDEKTVVEIKAKAGEDSRLFGSIPSKQIAEALNKQYNVKLDKRKI ELANPIRSLGYTNVPVKLHHEVTAKIKVHVVAE >gi|308151758|gb|GL476264.1| GENE 5 4659 - 6635 785 658 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 9 647 6 659 818 306 30 1e-106 MQKKRIQKNGFLIVVGLLLVEFLLYFLLTNKWLLLAVIIALDIFLLVVIRLLIRDVEITN VEKIQEASSIAEQSLDYVVNEVPVGIITYNGETRAVEWLNPYAASIFNKDNQLTLTTSQV TSYLELAERNQDIFTIDENTYRFSVNKEQHTITFEDITKESNLYQEKVEMQTAIGIVSVD NYDDVTDTMDEKEISYLNSFITTMVSDWMDQYKVFYKRINAERYFFIAQWEDIQKMMDEK FSILDTIRKESANHEVAITLSMGIAYGGPTLDQTGTTAQTNLDTALVRGGDQVVVKEAKD EAKPLFFGGKTAVTTKRSQVRSRAMSMAIKGIIAESADIYIMGHRYPDMDALGSAFGVAR LASFNNRKAWIVLDENEIIPDVKRVLEAIKEYPELEERIISPKEAMKRKKESSLLVMVDY HKPSLSISQELYERFDKVVIIDHHRRGDEFPAKPLLSYIESSASSASELVTELIEYQSNS ANKLQAFEATMMLAGIVVDTKSFNTRTTARTFDVASYLRTCGADSSLVQYLLSSDLTSYL EMNNLISKSEYVTKDTVVVAGSEDKEYDSVTAAKTADTLLSMAGINAAFVITKRTDQQIG ISARSNGSINVQIIMENLGGGGHFTNAAVQLSNVTVAEVKEQLLDVIRQNINEMYEQE >gi|308151758|gb|GL476264.1| GENE 6 6841 - 7080 397 79 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 [Enterococcus faecalis V583] # 1 79 1 79 79 157 100 1e-37 MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLT IAIKRARIMGLLPFVSDEQ >gi|308151758|gb|GL476264.1| GENE 7 7106 - 7672 633 188 aa, chain - ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 188 1 166 166 182 59.0 3e-46 MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFN NNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNNGMPDFDKDSDPFGGSGSSID ISDDDLPF >gi|308151758|gb|GL476264.1| GENE 8 7717 - 8019 510 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 [Enterococcus faecalis V583] # 1 100 1 100 100 201 100 1e-50 MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFRE GIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA >gi|308151758|gb|GL476264.1| GENE 9 8194 - 10695 3033 833 aa, chain - ## HITS:1 COG:SPy1152 KEGG:ns NR:ns ## COG: SPy1152 COG0188 # Protein_GI_number: 15675129 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 832 5 827 828 1119 70.0 0 MSEEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP DKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAA MRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMA TNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGS ITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREG MRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKE VITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQ AQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFG DARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVH DDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQA IISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQ KMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGY GKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGVIIRFNVDSV SQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVEEEIVEVVETTENETTSETEE >gi|308151758|gb|GL476264.1| GENE 10 10751 - 12700 2467 649 aa, chain - ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 643 1 646 651 961 77.0 0 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEA LAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKV SGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIP DPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHL NANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSL TRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVT DRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLAD CSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRS LFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIA QPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTM DPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI >gi|308151758|gb|GL476264.1| GENE 11 12697 - 13824 1137 375 aa, chain - ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 372 1 370 370 399 55.0 1e-111 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL IGWEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVILFAPED LSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDTVYLDI LTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTDLSLEA LQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQTYGSQGQQRTTALSIKLAE IDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGKVQTFLTTTSLDHIKDKLTVEPD IFYVQQGKIERNSAT >gi|308151758|gb|GL476264.1| GENE 12 13811 - 14056 303 81 aa, chain - ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 70 1 70 71 70 52.0 5e-13 MKKTFVLATEYITLGQFLKEINVIGSGGQAKWYLADNSVFVDGELENRRGRKLYAGMMIE IPEEGTFFMVKNGNESDDAAE >gi|308151758|gb|GL476264.1| GENE 13 14636 - 15766 1530 376 aa, chain - ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 375 1 377 378 343 51.0 3e-94 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDNNQVAITSGKADFTVNGLDAD NYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFILENQKLLAVATDS HRLSQRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTETMYFYS RLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISPDSVVLY GNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFGDMNITVKFLSPIRPFTLEPT ETELDFIQLITPVRTN >gi|308151758|gb|GL476264.1| GENE 14 15968 - 17311 1360 447 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 447 1 449 449 474 53.0 1e-133 MPDVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSA KIVETGFKLTGAEVMPHFVVADEKDAALAQELEEPAEEEVVFSEQSKKAMLNPKYTFDTF VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVNQPDAKVKYV SSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNEN KQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADAERLEIPDDT LSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSLKSVGSKNQLSILQIQ EEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREMTDNSLPKIGAEFGGKDHTTVIHA HEKIQQLLEKDPAIQKEVSEIKNLLNS >gi|308151758|gb|GL476264.1| GENE 15 17834 - 17968 223 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 [Enterococcus faecalis V583] # 1 44 1 44 44 90 100 2e-17 MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA >gi|308151758|gb|GL476264.1| GENE 16 18166 - 18528 317 120 aa, chain + ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 3 114 1 110 119 111 58.0 3e-25 MPMKKSYRVKKEKEFQQVFNKKQSCANRRFVVYVLEKPQQAHFRVGISVGKKIGNAVTRN AVKRKIRASLFQLKDRISPEIDFIVIARPGLEKLSSEEVKANLTHVLNLAKILDVREGIE >gi|308151758|gb|GL476264.1| GENE 17 18528 - 19355 1035 275 aa, chain + ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 266 21 267 269 270 57.0 2e-72 MKKYKRLLLMAGLVTLVFVLSACGTAPVSESSTGIWDRYIVYYFAQAIKFLSLGGSVGIG IILFTLVIRIILLPLMHFQTKSMRKTQELQPQLKALQQKYSSKDPETQRLFREEQQRLYA ENNVNPYIGCLPLLVQLPIMMALYQAISRVPELKEGTFLWLSLDKPDPYLILPILAAVFT FASTYLSSMSQLETNASLKIMNYVMPAMIFFMGISLASSLSLYWVVSNAFQTGQTLLLNN PFKIRKEREEAARQAKARERALERAKSPKKKGKKK >gi|308151758|gb|GL476264.1| GENE 18 19370 - 20146 1122 258 aa, chain + ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 5 256 7 206 206 153 37.0 3e-37 MPIYEGNTIEEATQKGLQALGLTKEDVTIDVLDEGKKGFLGLGKKLAQISMEPTISEQVT EAVEETVEDIVVADEAKAVEEAVEELTEAIPSLSEESTHSLENLEDEAAITELAMYLTNI SNELNAPAMVRIARENGNIIFHLETEKQGILIGKHGKVLNALQYLAQVFIHRIASNKLSI VVNVGNYREKRHEILERLAKRTAEKAKRTGRPVFLEPMPAFERKQIHHTLSKDEQIKTHS EGDEPYRYLVVEPVKKYF >gi|308151758|gb|GL476264.1| GENE 19 20332 - 21054 653 240 aa, chain + ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 229 1 228 234 131 33.0 1e-30 MRTEKILVVDDDAAVRRLIWKALQSTGILIYQSESIEKTKDIVSRVTFDLFILDDNLEHD SDGYYLVQMIREKYPLVPIIFFSSKKEEEDIIAALEMGVDSYITKPFSLNVFKAQVIASL NRARMIRKQLNVYKKEELQVGDFRFDYGRYQLFKKDLPISLSSKEVQLIQFFLENPEQVF SKEQIYSSVWGTGDVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYTFTPDGCVQKK >gi|308151758|gb|GL476264.1| GENE 20 21098 - 21793 808 231 aa, chain - ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 258 61.0 5e-69 MNPTVEAVKRNLDLTSSKPLKICTYEAFKKTIILGDIPAGERINEKEFSEQLNISRTPIR FALQELVKEQLVEHIPMVGIVVKGISMKDAYEIYDIRKSLDTLATIKAMELMTPEDFDEL EALLLEGEQYNKNNQVDDLLQNFSDFNSFIYTKSQMLRLKKIVTDLHAYLIYFRDIAIRA SERRSIALEEHWLIFRGMKTKNIDQITLLTHEHLNRSLQFILKEMERRQIE >gi|308151758|gb|GL476264.1| GENE 21 21927 - 23324 1668 465 aa, chain - ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 464 2 468 468 588 74.0 1e-168 MLLTILAYGMIIIFMYVIMKKKLSPFTSLVIIPLIFTLIAIATGVASPPPGADGVVPEVN IGNFVLDGISTTSKTGIMLLFAILYFSIMLDAGLFDPITKKMIYFAKGDPMKVLMATAVV AAAVSLNGDGTTTTLICCSAFIPIYKKLNMKLMNLGVLVILQNTIMNLLPWGGPTARAMA VLEVDADILSYLAPGMILSVLYVIFFVAYRMGKKERARLGVTTLTDKELEEMTIVNDPEL LEIRRPKNFAFNGILTIVLIGWLVLSSFVGQLGLPSWIEMPPLLLFLVGTCIALMINYPK LKDQSSRISANAGDAVQVVILVFAAGVFMGLFQGSGMANALANSFVNIIPKQLAGAWGLV IAFISAPGTFFISNDGFYFGVLPVLAEAGRSYGFDNMSMALASLMGQAFHLLSPLVAFIY LLLRLTGLDMGQWQKESAKYALGIFVIFVVTIVALGHMPLFIPQN >gi|308151758|gb|GL476264.1| GENE 22 23729 - 24091 389 120 aa, chain + ## HITS:1 COG:no KEGG:EF3326 NR:ns ## KEGG: EF3326 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 100.0 9e-44 MGLFKSLFKKEQHTQDTEINESVIQREADNLEKRWIDIPAYIPAEPKEYQLVSIVATAIA AGEFPESRFVIKKIAKRNPEAKEVAIIAASIAAELSEESQLVVKRISKQNLEEDHYVTQI >gi|308151758|gb|GL476264.1| GENE 23 24075 - 24476 592 133 aa, chain + ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 132 2 131 132 119 68.0 1e-27 MLRKFKISIDGKEYLVEMEEIGGVPQPAPVAPQPTAPVATTETPAPAVEEAPAPAAQPAA PAGADAMPAPMPGTVLKVLVNVGDTVSENQPLLILEAMKMENEIVAGKAGTVTGIHVTQG QIVNPGEPLITIN >gi|308151758|gb|GL476264.1| GENE 24 24506 - 25621 1567 371 aa, chain + ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 373 373 463 77.0 1e-130 METLIQGVIGMGQEPGRIVMMLIGGLLMYLGIKKEYEPTLLVPMGLGTILVNFPNSGVLS AGGEPGPFNVLFDFGIKTELFPLLLFIGIGAMIDFGPLLQNPFMLMFGAAAQFGIFFTVI MAVLLGFDLNDAASIGIIGAADGPTSIFVANTLHSKYMGAIMVAAYSYMALVPIIQPVAI KAVTTKAERRIRMTYRAGEVSQTAKILFPVVITIVAGLIAPVSLPLVGFLMFGNLLRECG VLDRLSITAQNELVNIISILLGLSISVSMNYAEFLKVDTLMVIGLGLVAFIMDSVGGVLF AKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMHAAGANVSGQIASV IAGGLLLAFLT >gi|308151758|gb|GL476264.1| GENE 25 25643 - 25777 256 44 aa, chain + ## HITS:1 COG:no KEGG:EF3323 NR:ns ## KEGG: EF3323 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 44 1 44 44 66 100.0 4e-10 MSVNMEDLKIAFELLGFGWGGVFVVLFIIYLASKLLTKLFPIKK >gi|308151758|gb|GL476264.1| GENE 26 25792 - 26802 1009 336 aa, chain + ## HITS:1 COG:FN0319 KEGG:ns NR:ns ## COG: FN0319 COG3053 # Protein_GI_number: 19703664 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Fusobacterium nucleatum # 15 329 10 325 345 236 41.0 4e-62 MSSVYTMKRIWLQKDKKAYQAWRELMEKAELQTTEALDYTVGIYDDTALIASGSLSGKTI KCVAVCKKYQSENLLTQLVVHLLEKLREENQLHSFLYTKPKNEQIFQSLGFQKVVANQEV LFMEQGKPDFADYLDYLTQHKKAGPASSIVMNANPFTKGHQYLVEKAAKESPHVYVFVLS EDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPTYFLKEKAPLEVAAIQATL DATLFKERIAPILEIQQRYVGEEPYSEVTDVYNQAMQQVFGQTITLTIVPRLAIGGELIS ATKVRKAMAEGDKETLKKFLPATSYQYLVEHKKLMR >gi|308151758|gb|GL476264.1| GENE 27 26808 - 27116 406 102 aa, chain + ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 102 109 59.0 1e-24 MKIIKNATAGTVESSDIMITVQPIESTENTIELESSVEKQFGNQIRQVITTTLEHLDVQG VAVKAIDKGALDCTIKARMITVLHRGAEKETYDWKELDSWNV >gi|308151758|gb|GL476264.1| GENE 28 27104 - 27991 1135 295 aa, chain + ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 436 83.0 1e-122 MERLRRTMMFVPGANAAMLRDAPLYGADSIMFDLEDAVSLKEKDSARVLVHSALKTFDYG NIEIVVRINALDAGGAEDIEAMVLAGVDVIRLPKTETAQDIIDVEAVITEVEQQNDIPVG TTKMMAAIESAEGVLNAPAIAKSSTRLIGIALGAEDYVTNMKTRRHPDGQELFFARSMIL HAARAAGIAAIDTVYSDVDNTEGFEAEVRLIKQLGFDGKSVINPRQIPLVNTIYAPTEKE IQNAKEVIWGIREAEAKGSGVISVNGKMVDKPIVERAERVIALALAAKLITEEEI >gi|308151758|gb|GL476264.1| GENE 29 27994 - 29526 1944 510 aa, chain + ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 842 84.0 0 MVVNKVGKDIPQSYAEQYGIYEGELAHIDAYQEASRAIKPVKPRETKLLGSIREAIEKTG LKDGMTISFHHHFREGDYVMNLVLAEIAAMGLKNISIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISAGIMENPVVIRSHGGRARAVAAGDIHIDVAFLGAPSSDAYGNANG TKGKATCGSLGYAMVDAKYADQVVIITDTLVPYPNTPISIPQTDVDYVVEIDAIGDPDGI AKGATRFTKNPKELLIAEYAAKIITHSPYYKEGFSFQTGTGGSSLAVTRFMREQMLKDGI KASFALGGITNAMVELLEEGLVEKIIDVQDFDHPSAISLGENANHYEIDANMYASPLSKG AVINQLDTAILSALEVDTDFNVNVITGSDGVIRGASGGHSDTSMACKMSLVIAPLVRGRI PTIVEQVNTVVTPGTSVDVVVTEVGIAINPKRTDLIDCFKTLDVPQFTLEELKDKAYNIV GTPEPIKYGDKVVALIEYRDGSLIDVVRNV >gi|308151758|gb|GL476264.1| GENE 30 29507 - 30055 523 182 aa, chain + ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 6 173 7 175 192 142 47.0 3e-34 MWYAMFNGEKVTLLEMLDAREQRAATQKELLETAPEASLLSATMNIPGEVKNSPTLTAVF LEVIDEVEQQLLDQVPIVNFYRNEKTGPEYYLAVSLAPQELKQRMVKIEETHPYGRLVDL DVLWGNEELKSLHRGDLGLPPRRCFMCQEEAKVCGRNRRHSLEAMQEKITEIILTRKEQP SE >gi|308151758|gb|GL476264.1| GENE 31 30048 - 31445 1759 465 aa, chain + ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 465 8 469 469 745 78.0 0 MSKKIRFTETVLRDGQQSLIATRMPTSDMLPIIKTMDEAGFHALEMWGGATFDSCVRYLN EDPWERLRQIRKEVKNTKLQMLLRGQNLLGYRHYADDVVRAFVEKSVENGIDIIRIFDAL NDVRNLQTAIQTTKEAGGHCQAAISYTTSEIHTIDYFVKLAKELSQTGADSICIKDMAGV LTPQTGFELVSKMKDAIDLPLEVHTHATSGISEMTYLKVAEAGADIIDTAISSFAGGTSQ PATESVAIALEDLGFETGLNMEKVTEIADYFNPIRDRFRSEGILNPKVKDTEPKTLIYQV PGGMLSNLLSQLTEQGLQDKYEEVLAEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGE RYSLIPNEIKDYVRGEYGKSPAPIAEEIKQKIIGDEEVITCRPADLLKPELHSLEKEIQQ YAKSEEDVLLYAMFPQQGKDFLGRREDPFYDVPLQKVTVKLDLPE >gi|308151758|gb|GL476264.1| GENE 32 31563 - 32735 1265 390 aa, chain + ## HITS:1 COG:L3227 KEGG:ns NR:ns ## COG: L3227 COG0281 # Protein_GI_number: 15673168 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 2 380 4 380 380 380 54.0 1e-105 MLEEVLAIHQKNIGVLSLEATEAVLNHHDLAKMYTPGVAELSLMIAQNHELAREWTISGK LIAVITDGSAVLGLGNMGTQAGLPIVEGKALLYKNLAGVDAIPLALEQKSVDEMVQTIEN LQNSFAGIHLEDISAPKCFEIEEKLQQRLNIPVYHDDQEGTAIVVLAGLINAAKIKGKPL NELRVVINGVGASGVATAKLCIQAGITHLTLVDRQGVLREEDPTLNPYQRALLRQVIKPS VENKDLATAVVNQDVFLGLSEADVLTPALIKSMNQDPIIFALANPKPEIEPALAQANGVR LLATGSSKYPNQVNNILAFPGLFKGLLAAKGRKVDVGLQMTVARSLAAMISEPTAEKFIP NVFDGGVVDTVFNAVLDYIKQEKATAEEGT >gi|308151758|gb|GL476264.1| GENE 33 32742 - 33611 831 289 aa, chain + ## HITS:1 COG:VC0801 KEGG:ns NR:ns ## COG: VC0801 COG1767 # Protein_GI_number: 15640819 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Vibrio cholerae # 16 284 39 308 313 155 37.0 7e-38 MTKQARSKLAQQAQLALLYEVTCLNKPGLVDPVDAGAHQDMDVFTFLESSVVLTPYFETF VQAGTELRHLPIEATFRAIRQVGLEAERAMFEATEGINTHKGAIFSLGIFLAVCGRLMIW ETPCTLQLFQQTLQTMTQDLLADFENLATNELEKLTWGERLFVQHGLTGIRGEAQQGYPA VFEQGVPYYQKHQGTQQQKLIDTLLYLSLYVEDTNLIKRSQNVQIFEIYQPLIQEYFALG GTQTLRGTLCLERLNHLFKEKNWSIGGSADALILVVFLDKLMKLNWLTP >gi|308151758|gb|GL476264.1| GENE 34 33596 - 33769 103 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307268895|ref|ZP_07550259.1| ## NR: gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] # 1 57 1 57 57 92 98.0 1e-17 MADPLIKKIVTTLIWSVILTLYAYGKVSREFKKAIDKYHETQYILLRNHSYQSIQIR >gi|308151758|gb|GL476264.1| GENE 35 34399 - 35637 1248 412 aa, chain + ## HITS:1 COG:no KEGG:EF3314 NR:ns ## KEGG: EF3314 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 412 17 428 1744 555 99.0 1e-156 MKKKIVEDFNRKSQHKKWTKRKMLNLAISSGLLFTSLAIPVSIAVTSGTISASAAVLDIE LLSNVTSNNDSGTSTSNRWTAANQNQPVNFTVSGGALADASAVFSGQKQAVLVVPPELRG NVAAAGSAAINTNVTIDLSKVTFLTAVLNAANDLTNVITQITSGALGNLTGVDIDLTEVN RQLELVNNIENLGAASFTAPETLAADGSYISAPISDGLGLVLAQNVSNILQDLNAAVQAL EAKGTSIPSNLVATAINAALLPVKGTVNVAVSGALPLLAVGGSGVNELVDASLLGATTVT LPTTVSTPQNLSNNLDARFVGTVVQTDLLDVNLLATADGVSNIYFAAGTTSEVTAPTVTG VTGNSTAGYEVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAG >gi|308151758|gb|GL476264.1| GENE 36 35861 - 39340 4343 1159 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 163 489 741 1047 1052 104 30.0 1e-21 MIGTGTADGTGAFTVTIPAGEAGANETLTAVAKNASGTESTPTTFQTPADETTVTAPTIT GVTGNSTAGYEVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETLTA VAKNASGTESTPTTFQTPADPNTPVATPIVETVTGSTTKGYEVKGTAEVGTTIEVRDAAG TVLDTATTGTDGKYTVTLDSGTATANQTLSVVAKNASGTESQPATATTPADVTAPTVDNI TGNSGSGYEITGTADPNTTIEVRDPSGAVIGTGTSDANGDFTVTLPTGTTNPGDTLTVIG KDNAGNESQPTEVLVPADATVTAPTVTGVTGNSVAGYQVTGTADPNATIEIRDADGNVIA TGTADGTGSFAVNLPAGTASANETLTALAKDPDGNTSTPTTFQTPADEVVAPPSVDKVTG NTTQGYQVTGTAELGTTIEVRATDGTVLGTATTGPTGQYTVTLASGKATAKQTVNVVAKN DTGLESQPTTAMTPADVTTPTIGDITGDSTTGYEITGTADPNTTIEVRNPDGTIIGTTTT DDQGNFTVDLPAGAANPGDTLTVVGKDGDGNESQPTEVTVPEDATVAAPTVTTVTGTTAT GYQVTGTAEPNVTIEIHNEAGLVIATGTTDGAGAFTITLPTGTATANEALTAIAKDAAGK ESNPTAFKTPADPDAPVATPTVDKITGSTTNGYQVVGAAEVGTTVEVRDADGTVLGMATT GTDGKYTVTLEPGKASANETITVVAKNATGKESQPATATTPADLATPTIDSITGNSGKGY EITGTAEPKTTIDVRDADGTIIAATTANETGQYTVTLPAGVVTPGETITIISKDGAGNES QPATAVIPADVVLAAPTITKVEGNKANGYTVTGTADLNVTVQFYNSSEQLLASGNTTTGG TFSVHIAAGLATEKETLTALTTDTQGNVSPKTTFMTPADITGEPEIKIAAPTVSSVLGTS KAGYLIKGTAEPNRIIQISNRLLRSVIAVGATDAEGNFAIQLTAGQATAQQSLLATATDG AGHYSTATTFMTPADPTNPGGGNGNTGGNNGNTGGNTGNNGATGGNNGNGSNTGSNPNGG SGLGTTGSGLGSLGNGLGTNGSGYNPKLSTISYGTGNHGKTGYLPSTGEKESSAVTTSLF GAFVALLASMGIIKRKRKN >gi|308151758|gb|GL476264.1| GENE 37 39573 - 40970 1874 465 aa, chain + ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 6 465 1 457 457 606 71.0 1e-173 MQSATMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGH IVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARMAEPGE FTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQV EVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGK SSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERS RKALADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPA EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVING IEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK >gi|308151758|gb|GL476264.1| GENE 38 40990 - 42888 2359 632 aa, chain + ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 630 1 627 629 907 73.0 0 MNQYQAESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGV VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENL TLRQGIVEELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQ PSVGLANHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQ NQEPCWLTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFL EPEGLNTEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTL ETKVIENLYTAGQTNGTSGYEEAAGQGLMAGINATLKIQGKEPLVLKRSDGYIGVMIDDL VTKGTNEPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEI ARLGKHRIKPTKEVQAFLETKGAAGLKDGILARDFLKRPEISYQEVAQFIPAPEEALDPK VIEQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPET IAQASRISGVNPADISILMVYIEQGKIAKVQG >gi|308151758|gb|GL476264.1| GENE 39 43060 - 43860 1055 266 aa, chain + ## HITS:1 COG:Z5618 KEGG:ns NR:ns ## COG: Z5618 COG1028 # Protein_GI_number: 15804613 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 EDL933 # 1 266 1 268 268 323 61.0 3e-88 MTDWLGIKGKVVIVTGGSSGIGRSIVESLLAQEVYVANFDISASETQHEHLLFVKVDVTS RAEVEAGVAQVVEKFGTVDGLVNNAGINIPRLLVDKNHPHGPYELSDEVFDKIVAINQKG LYLMSQAVGRILVQKQAGVIINMSSEAGLEGSEGQSAYAATKAAVSSYTRSWAKELGKSN VRVVGIAPGIMEETGLRTLAYEEALAYTRNISVEQLRAGYSKTSTIPLGRSGKLHEVADL VCYYLSDRSSYITGITTNVAGGKTRG >gi|308151758|gb|GL476264.1| GENE 40 43876 - 45738 1536 620 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 28 456 28 481 499 95 20.0 3e-19 MTLVNRWYQVIKLLVDHKGMSLQELQEKLAASPQTVRKNIDTLNDELIGIAQIIQKENLF QLEINNFEGFEEVLSGRLKRESDFNSSSKRVSYIIKRLIEEDQFISTYDLSEELAVSRGT VNKDIKRMKELIAPWQVAVVGTPNRGIHLEGKEFDLRLLHVNYVQEYFEEQFLHETTKQM IQKIIKETRLAKQDSFLLRRVVSIVLQRVLAGKLITELPPEYVDYVRHNEQIEELMYHLE ITYNVTLSQWERSFISFPFNINTNHIRNSLLADEGLLADYFQKMMKKIHHSVVVEFDEDF LFSEMKDHLRNVMNRLVFHVECHDLFYGEIERQYPLAYELAKIGLQELGRLLNRCVPTVE FGYLALYFELALRGNYEAGAKKEIAVICSTGHGTALIIQRQLEKVLGPDVQIAHFSEEEA ERRELNQYFAIFTTIPLKNIRPQTPMIHLTNLFNDTWLRNEWQRAKEIRSVESQNIHMTY QLLENTQGYRANIQKMIADLEAEKLVDPQFIERIFTREDQQTTIFESGIAFPHTINQALP TIILSIGVFEESLVTPEGKVDVILLLGIPEELTATVEAELLQLYDRLFTIAGDERLRNEL RKQRDVLAVKEWMQRKGIII >gi|308151758|gb|GL476264.1| GENE 41 45735 - 46220 545 161 aa, chain + ## HITS:1 COG:no KEGG:EF3308 NR:ns ## KEGG: EF3308 # Name: srlR # Def: transcriptional regulator SrlR # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 302 100.0 4e-81 MSFIYVFGALFLTAYFVQIAMGMKQIKHFNQNYQELRQLGKVAIGRRAGKLKAGTIILFA VDSQGKILAARKMQGVTVLAKFHPLPQYVNEDIHYMDHYHPLVQKENKLTQQAMENAREI YLRVELGNYQETQPLTPLNGAKIQWQLWKNKVQTKLKGSVE >gi|308151758|gb|GL476264.1| GENE 42 46220 - 46774 595 184 aa, chain + ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 182 2 183 184 206 54.0 2e-53 MSYITKFAEGFMHLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEERVTKVAKLSA KNPVTRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGIDTLGLNSMDLAIRYMFVGILMNFIGGWVTDFTTAYVCKQQGITLSKTVE IAVD >gi|308151758|gb|GL476264.1| GENE 43 46791 - 47786 1223 331 aa, chain + ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 5 330 4 328 329 342 57.0 5e-94 MTYNSIKVVKGNGGYGGPLVITPTEEKHKFIYITGGGEKPAIVDKIVELTGMEAVNGFKT SIPDDEIALAIIDCGGTLRCGIYPKKGIPTINVVPTGKSGPLAQYINETIYVSAVGPKQI TLTSEEAAADTEKPTSKKTEFKYDTSKKITEQKAEQQSFVAKIGMGAGKVVATFNQSARE GVQTMINTVIPFMAFVSLLIGVIQGSGIGGFFANIMAPLAGNIVGLTIIGFICSLPFLSP LLGPGAVISQVIGTLIGVEIGKGNIPPQLALPALFAINTQNACDFIPVGLGLEEAEAETV EVGVPSVLYSRFLNGAPRVLVAWLASFGLYS >gi|308151758|gb|GL476264.1| GENE 44 47810 - 48166 438 118 aa, chain + ## HITS:1 COG:PM1969 KEGG:ns NR:ns ## COG: PM1969 COG3731 # Protein_GI_number: 15603834 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Pasteurella multocida # 2 117 3 118 123 66 29.0 9e-12 MSVFTTKVQSIGPEAELFKEEKMVILFGKDAPDALADYCYNIEVQPVTEAITDKQTLVID EQTYQITAVGEVVLTNLDTLGHITIKFDGATTPELPGTLYVEEKAIPEITVGTTITIL >gi|308151758|gb|GL476264.1| GENE 45 48194 - 48871 804 225 aa, chain + ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 216 222 257 62.0 2e-68 MEFMLDTINLEAIRKYQKILPLAGVTSNPSIVKQAGKIDFFAQMKEIKKTIGQASLHVQV VGQTTEEMLEDAQTIVQQLGQETFIKIPVNEAGLAAIKQLKQANYRITATAIYTEFQGYL AIAAGADYLAPYFNRMENLTIDSQKVIEHLAAEIKRTNAKSKILAASFKNVAQINQSCQM GAQAVTIAPELVTQGLAMPAIQKAVTDFQEDWVAVFGVETVNELA >gi|308151758|gb|GL476264.1| GENE 46 49072 - 50844 1651 590 aa, chain + ## HITS:1 COG:L180241 KEGG:ns NR:ns ## COG: L180241 COG4716 # Protein_GI_number: 15672937 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Lactococcus lactis # 1 590 1 587 587 935 73.0 0 MRYTNGNYEAFARPRKPKGVDDKSAYIVGGGLAGLATAVFLIRDGQMKGENIHIFEELTL SGGSLDGKFIPHDGFVTRGGREMENHFECLWDLFRSVPSLEVEDASVLDEFYRLDLDDPN SSNCRIIHNRGERVPDDGQFTLSKKAQKEIVDLFMTSEDQLIGKKIEDVFGEEFFESNFW IYWCSMFAFEKWHSAIEMRRYIMRFIHHIKGLPDFTALKFTKYNQYESLVKPLLSFLTNQ GVDFQYETTINDIQVDIKGATKVARRLLLTQAGKTKEIPLTENDLVFVTNGSITESSTQG DHHTPAPITHELGGSWNLWKNLAKQSPEFGHPEVFCENLPDESWFVSATITWENFDIEPY LSRLTHRKLRTGKIVTGGIITIKDSNWMMSFAMHRQPHFKEQNDQQSITWVYGLLSNKPG NYIKKPIEQCTGQEITQELLYHLGVPEGEIERISEESATTIPVYMPFITSYFMLREPGDR PLVVPNGSKNLAFIGNFADTERDTVFTTEYSVRTAMEAVYQLLEVERGVPEVFASAYDLR VLANSVYYLSDKKKLTEMDMPFVERKMVEHFVKKFEDTYIGDILRENHLI >gi|308151758|gb|GL476264.1| GENE 47 51255 - 52241 1035 328 aa, chain + ## HITS:1 COG:no KEGG:EF3301 NR:ns ## KEGG: EF3301 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 328 1 328 328 639 99.0 0 MGRWQELQQAMSAGVEAAIDAGWDRQAVYGLVESAIKDTRFLPLEQAKTAVAELFSEVGE VGSSAYERLFCFSAYRPQEKLSLLLWQLGAVLDQHGMLQLVGPYRFSKTVAPHATFWDLL AKTVQKAYPLGLLGSFNQEKAKKIHQLRMYIDRQNITYIRDFFKQEGDTDEQALKRYVFA AKPQGMGGRKLKKSSARLHNKYPEGASYSLINKKRLTPNFHSEFILNEEGTFVTQWDVLV EDWRGRLISNPAYYQAAKNNEYQEKVLNGESFNYANRNNRTHELLDSSPPGRFDHQLRKT AKKGWLSPRIQEYDYRRERQIKCDDYSK >gi|308151758|gb|GL476264.1| GENE 48 52489 - 53205 839 238 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 238 1 238 238 306 63.0 3e-83 MLPEEFRQLLAAKGIELTDQQMTQFDQYFHLLVEWNEKMNLTAITEEKEVYLKHFYDSVS LAFFEDFASDKAICDVGAGAGFPSIPLKIVFPSLNVTIVDSLNKRITFLTELVNQLGLAN VSLYHDRAETFGQKAEFRGAFDYVTARAVARLNVLSELCLPLVKKEGYFLALKASKSEEE INEAKPAIATLGGQFQKEVGFTLPITADERHIVVIQKKKETPKKYPRKPGLPNKQPIK >gi|308151758|gb|GL476264.1| GENE 49 53221 - 53982 952 253 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 252 1 252 253 356 70.0 2e-98 MTRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPDVAHDV YDVLVNEEPITSVVQHTSRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVRDMYD FVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPELKIEG VLLTMYDARTNLGAEVVEEVRKYFREKVYDTIIPRNVRLSEAPSHGLPIIDYDIRSKGAE VYQALAKEVLENE >gi|308151758|gb|GL476264.1| GENE 50 53975 - 54865 1066 296 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 296 2 283 283 281 55.0 7e-76 MNKGKGLGRGIDALFQDIAKLEDVDVKNEQVTEILLNELRPNPYQPRKTFDETSLQELAN SILHSGVFQPIIVRKSAVKGYEIIAGERRFRASKLAGKEKIPAIIREFDEESMMQVAVLE NLQREDLNPLEEAEAYEMLMKNLKLTQAEVAERLGKSRPYIANYLRLLTLPDAVKAMVQK QSMSMGQARTLLGLKNKEQLLPLANRCIKDNLTVRQLEQLVAELNETQGKKGKKAKKAIK EKPIYIRESEDRLMDKFGTTVAIQEKEGKGKIEIEYLSSSDLARILDILDIHFDEE >gi|308151758|gb|GL476264.1| GENE 51 54983 - 55168 175 61 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 82 61.0 1e-16 MYDLGDIVEMKKPHACQANRWQIIRMGADIKIKCTNCGHIVMMPRRDFTKKLKKVIEKKA D >gi|308151758|gb|GL476264.1| GENE 52 55225 - 56340 1597 371 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 371 371 552 78.0 1e-157 MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDARLQRLTELVKP KKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRDA DFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAVEELAVLDKIKPVLEEGL SARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSENAEV IVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQEVRA WTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKDYVVQ DGDVMLFRFNV >gi|308151758|gb|GL476264.1| GENE 53 56449 - 57138 889 229 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 18 224 4 212 218 129 33.0 4e-30 MEAEALRAIVAENRQLEQNLTKRNEQYIFDLKKSLKAANLSEEELALALHGILPELIAGQ KTGKTARQLFGTVSERTEAILNKPAEVKEPAGWMIWLDNTLLLLGLLTIMLAAMSLFSKG TAQPLGLTTYILGAMAGGYVFYLMHKYVYRFDRQGGDKSKRPGWLKTTAILFGGMFLWIA VFAGSAMLPPVINPILDPMIALVIGALAFVARYFFKKKYNIQGSFMTRQ >gi|308151758|gb|GL476264.1| GENE 54 57304 - 58986 1258 560 aa, chain + ## HITS:1 COG:no KEGG:EF3294 NR:ns ## KEGG: EF3294 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 560 1 560 560 922 97.0 0 MGQQVKSWCRQHERLLIFISFLLLSGLSLYFVYFQENFLRASDFRFHQNRVEGLASAIKN NDWFPKINYFFLGGYGYASSLFYPDAYLYLPALLRVLGLSFVASMAIFVFAVNLATFSLT YYAGRLMALSKKRSYLFAILYGLSIYRMQDLFNRQALGEFLALSFFPLVLASLFLLRKGT TKYWPLLTLAMTGIGLAHFISIEMVSIWIGLYILFYWQQFFKKEVLWALAKAAGLTLLWL AFYLLPVAEQMKNQVFKVTSNPLTYISERSYPIVSLFINSLKSSVFHAKTANLGTLLFVG LVVAVVSLASKKIQDKRFIGLTLVLLLMVTTLFPWHLLNHTPLNTIQFPWRFLGILSVML AFFIAQDEWGVFRKSWTVALLVFLAISNLGIYQYQSIQSQQGRLLTKAEYEQPTPFYIGA GHEYLPDEINYQELLKQKKRQLDYSAEQVTITNVRMPYGKISFDYQVVKQSAKVTVPFIY YLGYQATIQMKNQTGAKKMSLTNQGGLAALSLSGTGHVDIRYQRTKVQKTGTMMTLLSVG GFGFSRFLQQKKKHKIKEQR >gi|308151758|gb|GL476264.1| GENE 55 59144 - 60625 2145 493 aa, chain + ## HITS:1 COG:L21264_3 KEGG:ns NR:ns ## COG: L21264_3 COG0516 # Protein_GI_number: 15672202 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Lactococcus lactis # 209 493 1 285 285 464 84.0 1e-130 MSNWETKFAKKGLTFDDVLLIPAESHVLPNDVDMSVQLAKNIKLNIPLMSASMDTVTDSN MAIAMARQGGLGVVHKNMTVAQQADEVRKVKRSESGVIIDPFFLTPTNLVADAEELMSRY RISGVPIVETMENRKLVGIITNRDMRFVTDYQIKIEEVMTKDHLVTAPVGTSLKDAEKIL QKHKIEKLPIVDEAGRLSGLITIKDIEKVIEFPNAAKDEHGRLLVAAAVGVTSDTFERAE ALLEAGADAIVIDTAHGHSAGVIRKIKEIRETFPEATLIAGNVATAEATKALYDVGVDVV KVGIGPGSICTTRVVAGVGVPQLTAIYDAASVAREYGKAIIADGGIKYSGDIVKALAAGG HAVMLGSMLAGTDESPGEFEIYQGRRFKTYRGMGSLGAMEKGSSDRYFQGSVNEANKLVP EGIEGRVAYKGSVSDIVFQLIGGLKSGMGYVGAADLKALREEAQFVQMSGNGLKESHPHD VQITKEAPNYSVQ >gi|308151758|gb|GL476264.1| GENE 56 60794 - 62065 1698 423 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 423 424 612 73.0 1e-175 MLDVKMMRQNFDEVKAKLQTRGVKEEILVEFLRLDESRRDLLVKVEEMKKYRNDVSAEIA QLKRNKEDATAKIAEMKEVGGNIKALDAEINAIDEELRGITTTLPNLPDDSVPVGAGEEE NVEVRRWSEPRTFAFEPKPHWEVAENLGILDFERGAKVAGSRFVYYKGLGARLERALYNF MLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQDTDLTLIPTAEVPLTNYY NNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFSDAEHSYEELE KMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLEVWIPAQETYREISSCSNCEDFQ ARRAMIRYRDENDKVQYAHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMGNLT VIK >gi|308151758|gb|GL476264.1| GENE 57 62400 - 63581 1214 393 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 384 76 379 380 187 36.0 2e-47 MLVKPKKIEKQKRITLTSKEISELLAEAIVTIVLLLLLNVSIMFLLGQLLSENSPLAGVI WATKDAVAKELNTDLFWSWNKFVLPIFFLVDAAVLYWRLIRRYHQMQLRHIISELHYIAD GNYNHRIPFELSGDLAKVVTSINGLVDSTVAAIEDERRIEKSKDELITNVSHDIRTPLTS IIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLLVDDLFEYTKVRQPSVPIHTTTFDM AQLIEQLAADFELEAKKINMQIQVKANPASLMMEGDTEKLVRVFNNLLSNALKYGKGGHH IVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDRFYRVEESRSQETGGTGLGLAIAQSIV ALHGGYIYAKSDQKWTSFIIHLPLQRTNKKSES >gi|308151758|gb|GL476264.1| GENE 58 63571 - 64260 858 229 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 227 53.0 1e-59 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSR MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIDAR Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:53:55 2011 Seq name: gi|308151757|gb|GL476265.1| Enterococcus faecalis TX4000 genomic scaffold Scfld36, whole genome shotgun sequence Length of sequence - 18645 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 12, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 48 - 1211 1309 ## COG0153 Galactokinase 2 1 Op 2 . - CDS 1168 - 1284 69 ## - Prom 1476 - 1535 3.4 + Prom 1199 - 1258 6.1 3 2 Tu 1 . + CDS 1431 - 2468 470 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 2476 - 2546 22.1 + Prom 2518 - 2577 4.2 4 3 Tu 1 . + CDS 2599 - 2745 236 ## EF1067 hypothetical protein + Term 2749 - 2809 11.7 + Prom 2786 - 2845 6.5 5 4 Tu 1 . + CDS 2866 - 3504 750 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3509 - 3552 1.6 - Term 3496 - 3540 6.1 6 5 Op 1 . - CDS 3550 - 3972 474 ## COG2764 Uncharacterized protein conserved in bacteria 7 5 Op 2 . - CDS 4048 - 4527 463 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 4549 - 4608 4.0 8 6 Op 1 1/0.000 - CDS 4762 - 5979 1387 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 9 6 Op 2 . - CDS 5976 - 7199 1152 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 10 6 Op 3 . - CDS 7223 - 8887 1776 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 9005 - 9064 6.7 + Prom 9177 - 9236 6.9 11 7 Tu 1 . + CDS 9268 - 10938 1691 ## COG2508 Regulator of polyketide synthase expression + Term 10943 - 10983 2.1 - Term 10920 - 10979 10.0 12 8 Op 1 . - CDS 10993 - 11418 681 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 13 8 Op 2 . - CDS 11418 - 13016 1650 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13096 - 13155 7.9 - Term 13221 - 13281 9.1 14 9 Tu 1 . - CDS 13285 - 13797 398 ## EF1055 tunicamycin resistance protein, putative - Prom 14023 - 14082 5.1 + Prom 14173 - 14232 5.1 15 10 Op 1 6/0.000 + CDS 14342 - 16099 1169 ## COG4986 ABC-type anion transport system, duplicated permease component 16 10 Op 2 . + CDS 16158 - 16967 319 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 16974 - 17033 4.5 17 11 Tu 1 . + CDS 17262 - 17513 289 ## gi|229546265|ref|ZP_04434990.1| hypothetical protein HMPREF0349_1482 - TRNA 17539 - 17622 62.3 # Leu CAA 0 0 - TRNA 17636 - 17706 71.3 # Cys GCA 0 0 - TRNA 17732 - 17803 67.6 # Gln TTG 0 0 - TRNA 17818 - 17890 65.0 # His GTG 0 0 + Prom 17758 - 17817 3.5 18 12 Tu 1 . + CDS 17926 - 18198 88 ## gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 - TRNA 17927 - 18000 68.8 # Trp CCA 0 0 - TRNA 18005 - 18085 72.8 # Tyr GTA 0 0 - TRNA 18091 - 18163 75.3 # Phe GAA 0 0 - TRNA 18209 - 18284 75.5 # Asp GTC 0 0 - TRNA 18295 - 18367 88.0 # Val TAC 0 0 - 5S_RRNA 18307 - 18363 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 18395 - 18466 70.2 # Glu TTC 0 0 - TRNA 18484 - 18572 53.0 # Ser GGA 0 0 Predicted protein(s) >gi|308151757|gb|GL476265.1| GENE 1 48 - 1211 1309 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 3 386 8 391 392 457 61.0 1e-128 MEELLMNRFVEIFGEKGTACYFAPGRINLIGEHTDYNGGHVFPAAITLGTFGVARKRDDQ KIRMFSDNFKEVGLIEFSLEDLTYSDSDDWANYPKGVLNYLIESGHNIDSGLDVLFYGTI PNGAGLSSSASIELLMGTICNDLYALHCPMLELVQIGKKVENEFIGVNSGIMDQFAVGMG EKDQAILLDTNNMHYEMVPAKLGEYTIVIMNTNKRRELADSKYNERRAECEEAVRLLQKE LSIEFLGELNSETFEQYQALIGDPTLIKRARHAVTENERTLLAKQALTEGDLEEFGLLLN ASHRSLKEDYEVTGIELDTLVACAQEQPGVLGARMTGAGFGGCSIALVPKQNIDAFIEAV GQSYQDKIGYAADFYPASIDDGARKLF >gi|308151757|gb|GL476265.1| GENE 2 1168 - 1284 69 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSKYLQKFSKYYTICLLVKGAISDGRTVNESICRNIW >gi|308151757|gb|GL476265.1| GENE 3 1431 - 2468 470 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 344 14 343 345 185 32 2e-46 MTISTESFGQGMLLYTLTNKNGVTLKATDFGARIVALDVPLTKNESRSLVLGFPSADEYL SKDLYFGATIGRTAGRIADGSFELAGKTYQTMINTPTQTTLHGGTPGFESKKWHSEIQEA QVNPSVKFWLESPAGENGFPGNLTVSVTYTLTEENEWQIEYQATTDEQTLFNPTNHVYFN LTGNPAIPIDAHELQINAQKYVPLDERVLPLGELASVDQTAFDLQKPKKLAEVFSSNDEQ IQKMNGFDHPFILTNHDLINPDVILKSPTKDITLEMFTDQPSVVIFSANFADNGPDIQGQ KLVNHGALTFETQVCPGAERFPLFGSITLSPEQEFHSTTRFKLIY >gi|308151757|gb|GL476265.1| GENE 4 2599 - 2745 236 48 aa, chain + ## HITS:1 COG:no KEGG:EF1067 NR:ns ## KEGG: EF1067 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 20 67 67 91 100.0 1e-17 MYAIKFFHGYLTADGKRTRDKSGCLVYHSEKEAQKLADKIGGRVKKIG >gi|308151757|gb|GL476265.1| GENE 5 2866 - 3504 750 212 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 1 195 1 193 203 212 50.0 4e-55 MKQNDFDYMQMLKGELYYAPTILPENKSTKGKVLAQKINQLPIDNVKEIVALEKELLGKT GNELYITPPLHVDYGRHIEVGENFYANMDCIFLDVNKIIFGDNVMVGPRASFYTAGHPID PTIRTAELEFGTPIIVEDNVWIGGSATILPGVTIGKNAIVAAGAVVTKDVPANTIVGGNP AKVIRKIDENDQQFWTEKQRQYQIAKKQFFHE >gi|308151757|gb|GL476265.1| GENE 6 3550 - 3972 474 140 aa, chain - ## HITS:1 COG:lin1207 KEGG:ns NR:ns ## COG: lin1207 COG2764 # Protein_GI_number: 16800276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 135 3 133 135 142 50.0 2e-34 MLELYINFKGEAKEAIAFYEDVFDTKCQNLMTFGEAPEDPEHPINDEIKDLVMNASIIIE GTYVMISDVPDMFGFEVTEGNNLSLVVSTDDDEKIDRLFKRLSEGGTVTMPLSETFWSKK YGSLKDQFGIHWMFNYYEED >gi|308151757|gb|GL476265.1| GENE 7 4048 - 4527 463 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 157 3 154 165 182 59 1e-45 MTEQTRENKKAAYELCLQQLSGLLEIETDAIANLANSSALLAQTLPDTVFAGYYLYKDEE LVLGPFQGKVSCTRIKMGKGVCGESAEKQATLIVDNVKTHANYISCDSAAMSEIVVPMVK NHQLVGVLDIDSGVTNSYDAVDQLYLEKFVTLLLEKSDF >gi|308151757|gb|GL476265.1| GENE 8 4762 - 5979 1387 405 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 7 405 55 454 460 231 34.0 2e-60 MTASIVYLNNVRLETGFAKDHHELTYTKTARYTLAIQEGKIQAIIPQNQVTEKQQGTDLN GQLAIPAFQESHNHLDKTYLSLGWRASQPVKNLKERLADEASELKLLAPSTEQRATAMIE KLIGYGASYIRTHVNIDPYVELENFWGVKRALEKYAHVIDYDIVVFPQHGLLKNPHTVLL MREALKNGGTMVGGLDPAGIDYAIEESLETIFDLAEEFQVGIDIHLHDTGEVGVYTIDKF LDILEERKFTQRTAISHAFALLDVRPAEKEKLYQRLATHQTAIMSTIPYDPRYLLPPIDV LRQAGVSVHLGSDGFFDSWSSNVSGDLFEKLRNFCEMTGKITEEQLTQAYVHGCGKEAPF SFEEERLWFTEGDEANFIFTEAASTAEVIARKPQKRKIMLKGQWV >gi|308151757|gb|GL476265.1| GENE 9 5976 - 7199 1152 407 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 3 398 56 454 460 289 39.0 6e-78 MLLKNCKLETGFSTVNQRIVATETASYDIRIENEVCTAVAPQLRPLENETVIDVNQQLVL PALREMHIHIDKTYFGGPWKACRPLTKGILTRIEEETWLLPEQLPTSLERACQVIEQYIQ QGHYHIRSHCNVDPSIGTKHIEITKEAFSRYEQYITHEIVAFPQHGLLRSQVEPLMREAL RMGATHVGGVDPALVDRHVDHSIAKIFELATTFNKKIDVHLHARDTLGLYEFNKFVDYTE QAKMFGEVTLSHALALGGLEEAAIRDIAQKFIETGIDLTSTVPIGMPTMPIPTLVEQGVK ISVAHDSLTDHWSPFGSGNTIEKLNTAAQRFKISDEYRLNRLWGLASNFVTPLDPNGQRV WPNVGDSADFLLFNAESTAHVIARQQPIQQLILKGQLVEAVQKGEKE >gi|308151757|gb|GL476265.1| GENE 10 7223 - 8887 1776 554 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 18 553 22 558 559 400 39.0 1e-111 MKKLKMLGCVGLLLALTACQAGTGNSADSNKAAEQKIAISSEAAISTMEPHTAGDTTSTL VMNQVYEGLYVLGKEDELELGVAAEEPAISEDETVYTFKIREDAKWSNDDPVTANDFVYA WQQVASPKSGSIHQALFFDVIKNAKEIALEGADVNTLGVKSLDDKTLEITLERPTPYLKS LLSFPVLFPQNEKYIKEQGDKYATDAEHLIYNGPFKLKEWDNASSDDWTYEKNDTYWDAE KVKLTEAKVSVIKSPTTAVNLFDSNELDVVNKLSGEFIPGYVDNPAFLSIPQFVTYFLKM NSVRDGKENPALANNNIRKALAQAFDKESFVKEVLQDQSTATDQVIPPGQTIAPDGTDFT KLAAKKNNYLTYDTAKAKEFWEKGKKEIGLDKIKLEFLTDDTDSAKKAAEFFQFQLEENL DGLEVNVTQVPFTIRVDRDQTRDYDLELSGWGTDYRDPLTVMRIFTSDSTLGGVTFKSDT YDQLIQETRTTHAADQEARLNDFAQAQDILVNQETVLAPIYNRSISVLANQKIKDLYWHS FGPTYSLNGLMLTN >gi|308151757|gb|GL476265.1| GENE 11 9268 - 10938 1691 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 552 1 528 531 149 22.0 1e-35 MMTVNDLLHAEELPGLTLLTHETNLDAPILQANILENPDAFDWLTPGEILLTTGYIFKDQ PCLQKRLIQELANMNCAALGFKVQRYFNEVPQEMIQLANDVGLPILSIPYNYNFSQIISL VNRRVNQPDETISQHSVHMHNKFYTIIKAGGKCTQLLEVLSAAIQAPVMLLDERFQIMNH FDLPDAPTRITSILNNATLKKQFETALKAQNNELLLFYKEPLTVEFSLANHQLSLRILPI KKKNLSLSYLVIWQTTKKLQTIDLLSVEVCAHYLLPQLQLESSENLTTRQKIGALFQDLI QEKNTNPQAWQEFSNYLQLNEKDTFSLLLVAIEQLEQLFNPTIQMNSIGHQLNHILEGYR QKITAFPTQTGFILLLENPAQEEATYLAQTTHLAKNLLEQLMKLNPKLSFKLAIGPTVKK ITNLCDSYKLAQETFHLAQASQELQQRTILNYDDLFFYRLMIETLTKQAKQKIYQRLIEP LEKEDQKHESSLLETINTYFQSNKNISLTATNMYVHRNTIIYRLKKIEEILHLTLEFPDS SLQLSLAVYLYKQKLL >gi|308151757|gb|GL476265.1| GENE 12 10993 - 11418 681 141 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 141 4 144 145 64 26.0 5e-11 MKFSKIMVGVEESPDALKAFHYAIQKAKEEQAELVIVSILEEKEINVYQSLDKNYWQEQL AKLEKQTEKYQQEALANGIDKVSVIVNEGNPGELIINKLIPLNKPDLLIIGSKSTSKLKS FFGSQAAYMARYAPISVMIIR >gi|308151757|gb|GL476265.1| GENE 13 11418 - 13016 1650 532 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 3 310 2 306 314 447 77.0 1e-125 MKNSEEHEPKQRHHLIEYANGPSLEEINGTIDVPKNMSFWKTLFAYSGPGALVAVGYMDP GNWSTSITGGQNFQYLLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGI VLWILTELAIMATDIAEVIGGAIALYLLFHIPLGLAVFITVFDVLLLLLLTKIGFRKIEA IVVALIVVIFVIFAYQVALSNPVWGDVIKGLVPSAEAFSTSHAVNGQTPLTGALGIIGAT VMPHNLYLHSSVVQSRKIDRKDKTDIQRALRFSTWDSNIQLTMAFFVNSLLLIMGVAVFK SGSVKDPSFFGLFDALSNPAVMSNSILAHIAGSGILSILFAVALLASGQNSTITGTLTGQ IIMEGFIHMRVPIWLRRMVTRLLSVIPVLICVLMTSGKSTVEEHIAINNLMNNSQVFLAF ALPFSMLPLLMFTDSRVEMGEHFKNSWLIKLLGWVSVIGLIYLNMKGLPDQIEGFFGDNP TASQITLADNIAYVIIALVILLLVWTVVELYKGDKRYAQQLAAMEQQVEEVK >gi|308151757|gb|GL476265.1| GENE 14 13285 - 13797 398 170 aa, chain - ## HITS:1 COG:no KEGG:EF1055 NR:ns ## KEGG: EF1055 # Name: not_defined # Def: tunicamycin resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 333 100.0 2e-90 MIIWLNGAFGAGKTTIAHELQQKLPNAIIYDPEIIGSALMELVPEEMKENDFQEYQEWRC WNAHLLKRMSKESGRPIIVPMTLYKNEYEEELIGYLRRAGIDVYHFLLAVEKEEILQRLL KRNDGTFEWGKNKLPEVLEGFRQIQFTEIFRNHSADTTEIVATILNRITE >gi|308151757|gb|GL476265.1| GENE 15 14342 - 16099 1169 585 aa, chain + ## HITS:1 COG:RSc3371 KEGG:ns NR:ns ## COG: RSc3371 COG4986 # Protein_GI_number: 17548088 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Ralstonia solanacearum # 20 582 30 583 586 301 33.0 3e-81 MKAVTASSKKNTLLAKSIGNLTLLIILGIFIFIIVFSWLKMNRPLHTLPSEEFLATPSKT DDFLSPSNLFYFSIRTMFRMIVGMAWSFLFSFVFGILAVKYKTARRVILPLVNFLESVPL LGFLTFTTAWLLGLFPGNVMGAEAVAIFAIFTGQAWNIMLTLYQIMEVIPSDLVNVTDQF KYNAWEKFWRLEFVYSIPGLLWNVIISQTAAWFALVASEQASVAFPKETNLYLPGIGSYI QVALNRADFKSCLWAVFALLINVVILNFLVFQPLVRATYYFKYETDVESTTPPKSIIYHL LKKATLTKYFSKAFVKFSHFWIYDLPKVWYFFKLDYLYRLLAKLRHFFKTLWYVSLTIIG VYCSIKLYHFLPHQDFSMIPRLTLYTTLRVTLAMVVAGIIFTPLAIWVANDNRRLSIVQP IGQILGSIPSNVYTPFIVLIISMGFNKLEWWILPLIMVGCQWYFFFNVIAGYLAIPDDIR DVTKLFKLSKWQWWTKFLIPSILPYLITAIINAAGAAWNADIAAESIQWGKKSIDVTGLG QYIAANDGVKDKFALGTLAMCFVVGLCIAFVWQPLYRAAKQKFHY >gi|308151757|gb|GL476265.1| GENE 16 16158 - 16967 319 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 16 227 1 212 245 127 34 6e-29 MISLDLSNKTMENKELLSIKSVYKEFEIEGHSEHLKVLENIDLTVKTNEFLSIIGQSGTG KSTLLRSIAGLLRTTRGEITFEDKIINEPDANIGMVFQHFALFPWLTVEKNISFGLENRK EISREQINKRVSNLIEMIGLTGFEKAYPRELSGGMKQRVGFARALAIEPSLLLLDEPFSA LDIITASQLSNDLLEIWLNNQIATKSIVMITHDVQQAVQLSDRVVLMDANPGRIAKIYSI DIPRNQRSPKTTIDIVEQITEEMVRRIHL >gi|308151757|gb|GL476265.1| GENE 17 17262 - 17513 289 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546265|ref|ZP_04434990.1| ## NR: gi|229546265|ref|ZP_04434990.1| hypothetical protein HMPREF0349_1482 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01022 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1482 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01022 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_00977 [Enterococcus faecalis TX4000] # 1 83 1 83 83 145 100.0 1e-33 MTTMLAIIGTVAIITVQVIEYNMTEIHIPTAGTFNDDDAEPPHSSVTLVFIRTILITLSL NFPSHFFEMVFLCIRENNNEKDC >gi|308151757|gb|GL476265.1| GENE 18 17926 - 18198 88 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|47092471|ref|ZP_00230261.1| ## NR: gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] # 1 58 1 60 120 75 75.0 1e-12 MAGAAGIEPTPTVLETVVLPLNYAPKMEESGFEPLNPKERIYSPSRLATSLFLHKWRETE SNCRHTELQSVALPTELPRLKQKLVQIIFK Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:54:21 2011 Seq name: gi|308151756|gb|GL476266.1| Enterococcus faecalis TX4000 genomic scaffold Scfld37, whole genome shotgun sequence Length of sequence - 8084 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1059 - 2525 1583 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Term 2562 - 2625 4.1 3 2 Op 1 8/0.000 - CDS 2648 - 4078 1874 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 4 2 Op 2 7/0.000 - CDS 4102 - 6000 2635 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 5 2 Op 3 . - CDS 6074 - 6916 843 ## COG3711 Transcriptional antiterminator - Prom 7121 - 7180 9.6 - TRNA 7159 - 7230 70.2 # Glu TTC 0 0 - TRNA 7246 - 7333 62.7 # Ser GCT 0 0 + Prom 7063 - 7122 7.2 6 3 Tu 1 . + CDS 7343 - 7648 125 ## gi|257147743|emb|CAR86716.1| Putative protein without homology - TRNA 7344 - 7417 92.9 # Ile GAT 0 0 - TRNA 7431 - 7501 71.8 # Gly TCC 0 0 - TRNA 7516 - 7588 75.8 # Phe GAA 0 0 - TRNA 7594 - 7667 80.1 # Asp GTC 0 0 - TRNA 7716 - 7789 74.1 # Met CAT 0 0 - TRNA 7823 - 7912 62.1 # Ser TGA 0 0 - TRNA 7925 - 7996 70.2 # Glu TTC 0 0 - TRNA 8011 - 8084 92.9 # Ile GAT 0 0 Predicted protein(s) >gi|308151756|gb|GL476266.1| GENE 1 220 - 1038 1014 272 aa, chain - ## HITS:1 COG:lin0517 KEGG:ns NR:ns ## COG: lin0517 COG0406 # Protein_GI_number: 16799592 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 269 1 270 270 289 58.0 5e-78 MKKRLTIVGMLFLAILVMVGCGKNQQATTKEKETKPEELTLYIVRHGKTMLNTTDRVQGW SDAVLTPEGEKVVTATGIGLKDVAFQNAYSSDSGRALQTAQLILDQNKAGKDLEVVRDPD LREFNFGSYEGDLNKTMWQDIADDQGVSLEEFMKNMTPESFANSVAKLDQQREESKNNWP AEDYATITKRLKKGLDKIVATESANPGNGNVLVVSHGLSISALLATLFDDFKVPEGGLKN ASVTTIHYKNGEYTLDKVNDVSYLEAGEKESK >gi|308151756|gb|GL476266.1| GENE 2 1059 - 2525 1583 488 aa, chain - ## HITS:1 COG:lin0017 KEGG:ns NR:ns ## COG: lin0017 COG2723 # Protein_GI_number: 16799096 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 3 485 6 476 477 551 55.0 1e-157 MGFPENFLWGGATAANQYEGGYLSGGKGLSTLDAITGGSQTEPRRITYLTKEGQKASCTR DQALPEGAIGYIDEELYYPSHVATDFYHHYEEDIALFAEMGFKCFRLSIAWSRICPNGTK EINEEGLAFYDKVFDALLRHGIEPVVTINHFDIPMYLADEYDGWKNREVIDFFVFFCETI FTRYQDKVKYWMTFNEINFLRSWTQIGIHNNDKQSKYQAAHHLFVASAKAVELGHSINPD FQIGMMVAYIPSYPLSCKPEDVMAAVQFNREQEFYMDVQAKGYYPAHKLKEFEREGMKIQ MESEDLAIIQKGTVDYIGFSYYMSTVSTAYPEEVKYVGGNQMPAVKNPYLQESEWGWAVD PLGLRISLCQLSDRYNMPLFVVENGFGAVDTLQEDGSIVDDYRIDYFKQHIEAMRTAVEE DGVNLIGYTPWGCIDLVSAGTGEMKKRYGFIYVDMDDEGQGTLKRTKKKSFNWYKQVIAS NGENLTTE >gi|308151756|gb|GL476266.1| GENE 3 2648 - 4078 1874 476 aa, chain - ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 476 1 476 477 787 76.0 0 MAFRKDFLWGGATAANQCEGGYNEGGRGLANVDLAPTGPDRFPVITGEKKMFNFDEEHFY PAQEAIDMYHRYKEDIALFGEMGFKTYRLSIAWSRIFPMGDETEPNEEGLKFYEDLFKEC HKYGIEPLVTITHFDCPMHLVEEYGAWRSRKLVGFYENLCRVIFNRYKGLVKYWLTFNEI NMILHAPFMGAGLYFEEGENKEQVKYQAAHHELLASAIATKIAHEVDPENQVGCMLAAGS NYAYTCKPEDVFAARQADRENYFFIDVQSRGEYPAYALKEMARKGIQIEMEEGDEELLKE HTVDFISFSYYSSRVTSTDPEINEQTAGNIFASVKNPYLKASEWGWQIDPLGLRITMNDL YDRYQKPLFIVENGLGAVDTPDENGYVVDDYRIDYLAAHIQAMKDAVEQDGVDLLGYTTW GCIDLVSAGTGEMKKRYGFIYVDRDNEGNGTLKRSKKKSFDWYKKVIATNGEDLSN >gi|308151756|gb|GL476266.1| GENE 4 4102 - 6000 2635 632 aa, chain - ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 85 470 3 384 399 312 49.0 2e-84 MGKYHELAEKIVKNVGGQENINSLTHCITRLRFKLKDESQANDDVLKNMDGVVTVMKSGG QYQVVIGNHVPAVYEEVVSIAGLSGEREEEASSGNLFDRLIDILSGCFQPFLGALAAAGM VKGLNALLVFLKLYTATSGTYTMLNGIGDAIFYFMPVILGYTAAKKFRLHPMVGIVIGAA LCYPTIQGSALQTAFETTAGAGAAAPYNLFGLPAYNTFMGIPWVGANYTSSVVPIIFIIA FAAQVQKVFKRIIPEVVQTFLVPFFVLLIALPIGFLVIGPIVSMLTDLLSAGFTALMSFS PALYGLILGFFWQVLVIFGLHWSVVPLAIMQVTQEGSSQVLTGSFAASFAQTAVVLAMFF KLKDKKLKALCPPAIISGIFGVTEPAIYGITLPKKWPFIYSMIGGAVGGLYLMINNVTAY TMGGLGIFGVLNFINGDDASGMIQSFIAIAIAAVVGFGLTFFFWKDDTVEEEEVIIDKTT IKKENITSPVKGRVLSLKNAEDPAFANGALGNGVVIEPTEGKVVAPFDGTIVTLFPTKHA LGLISDNGTELLIHIGIDTVQLEGEGFEAFVKQGDRVKKGQTLVTFDLEGIKKAGFSTQI PIVVTNTADYLDILEVGSNEVSTSDDLLTALI >gi|308151756|gb|GL476266.1| GENE 5 6074 - 6916 843 280 aa, chain - ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 276 1 275 277 256 48.0 4e-68 MIIHKILNNNVVITLDDDKREQIVMGKGIAFKKRIGDWVPDESIDQVFYLANQETSLKFQ ELLGNIPLEMMKLSDDIIVYAKSTLKKSLNDTIYISLTDHLYTALERKKQGIAIKNLLLW DIKRFFPEEYEVGVNALKMVQKRVGMELSTDEAGFIALHLVNAEMEEEVGNIYELTKLMQ EITNIVKYYFKVSFDEDSVYFYRFSTHLKFFCYRLLHQREVVENDDEELYAVIKKKYLNA YRCVEKISLYLNENYDYQVSNEERLYLTIHIARIVQTTEQ >gi|308151756|gb|GL476266.1| GENE 6 7343 - 7648 125 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257147743|emb|CAR86716.1| ## NR: gi|257147743|emb|CAR86716.1| Putative protein without homology [Lactobacillus rhamnosus GG] Putative protein without homology [Lactobacillus rhamnosus Lc 705] # 1 100 1 102 103 97 59.0 4e-19 MGLNGLEPSTSRLSGVRSNQLSYRPQIRKKRVTRIELATTAWKAVVLPLNYTRKFFLDGA GQNRTADTWSFNPLLYQLSYRAKNGLDGTRTRDLLRDRQAF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:55:11 2011 Seq name: gi|308151755|gb|GL476267.1| Enterococcus faecalis TX4000 genomic scaffold Scfld38, whole genome shotgun sequence Length of sequence - 151339 bp Number of predicted genes - 165, with homology - 161 Number of transcription units - 70, operones - 32 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 25 - 2682 2238 ## EF1473 hypothetical protein 2 1 Op 2 . - CDS 2685 - 2825 143 ## EF1472 hypothetical protein 3 1 Op 3 . - CDS 2866 - 3198 497 ## EF1471 hypothetical protein - Term 3215 - 3250 3.1 4 2 Op 1 . - CDS 3251 - 3649 494 ## EF1470 hypothetical protein 5 2 Op 2 . - CDS 3665 - 4702 1174 ## EF1469 hypothetical protein 6 2 Op 3 . - CDS 4699 - 5175 349 ## EF1468 hypothetical protein 7 2 Op 4 . - CDS 5162 - 5521 313 ## EF1467 hypothetical protein 8 2 Op 5 . - CDS 5521 - 6018 187 ## EF1466 hypothetical protein - Prom 6048 - 6107 5.5 - Term 6050 - 6098 7.5 9 3 Op 1 . - CDS 6123 - 6464 180 ## EF1465 hypothetical protein 10 3 Op 2 . - CDS 6476 - 6862 548 ## EF1464 hypothetical protein 11 3 Op 3 . - CDS 6882 - 7763 1000 ## COG4834 Uncharacterized protein conserved in bacteria 12 3 Op 4 . - CDS 7784 - 8254 878 ## EF1462 hypothetical protein 13 3 Op 5 . - CDS 8257 - 9360 1006 ## COG3566 Uncharacterized protein conserved in bacteria 14 3 Op 6 . - CDS 9373 - 9582 419 ## EF1460 LysM domain-containing protein 15 3 Op 7 . - CDS 9575 - 9862 260 ## EF1459 hypothetical protein - Term 9885 - 9916 2.5 16 4 Op 1 . - CDS 9917 - 10081 213 ## EF1458 hypothetical protein 17 4 Op 2 2/0.167 - CDS 10074 - 11318 770 ## COG2369 Uncharacterized protein, homolog of phage Mu protein gp30 18 4 Op 3 1/0.500 - CDS 11308 - 12702 1177 ## COG3567 Uncharacterized protein conserved in bacteria 19 4 Op 4 . - CDS 12725 - 14161 1056 ## COG5410 Uncharacterized protein conserved in bacteria 20 4 Op 5 . - CDS 14142 - 14867 318 ## EF1454 terminase, small subunit, internal deletion 21 4 Op 6 . - CDS 14882 - 15094 235 ## EF1453 hypothetical protein - Prom 15115 - 15174 2.2 22 5 Op 1 . - CDS 15235 - 16503 982 ## COG0863 DNA modification methylase 23 5 Op 2 . - CDS 16548 - 16817 352 ## EF1451 hypothetical protein 24 6 Tu 1 . - CDS 16919 - 17122 139 ## gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein - TRNA 17313 - 17397 57.0 # Lys TTT 0 0 - Term 17415 - 17451 3.0 25 7 Tu 1 . - CDS 17557 - 18141 533 ## EF1450 positive control factor, putative - Prom 18167 - 18226 2.6 - Term 18161 - 18219 16.2 26 8 Op 1 . - CDS 18242 - 18421 122 ## EF1449 hypothetical protein 27 8 Op 2 . - CDS 18388 - 18558 83 ## 28 8 Op 3 . - CDS 18521 - 18712 243 ## EF2829 hypothetical protein 29 8 Op 4 . - CDS 18706 - 19023 481 ## EF1445 replicase domain-containing protein 30 8 Op 5 . - CDS 19037 - 19468 388 ## EF2118 hypothetical protein 31 8 Op 6 . - CDS 19468 - 20004 448 ## SPH_0092 hypothetical protein 32 8 Op 7 . - CDS 19997 - 20356 477 ## SPN23F_15600 hypothetical protein 33 8 Op 8 . - CDS 20370 - 20648 418 ## EF2120 hypothetical protein 34 8 Op 9 . - CDS 20645 - 21127 574 ## gi|315029936|gb|EFT41868.1| conserved hypothetical protein 35 8 Op 10 . - CDS 21124 - 21558 359 ## EF1440 hypothetical protein 36 8 Op 11 . - CDS 21564 - 22517 411 ## COG0270 Site-specific DNA methylase 37 8 Op 12 . - CDS 22578 - 23336 364 ## COG0338 Site-specific DNA methylase 38 8 Op 13 . - CDS 23433 - 23660 216 ## gi|315029940|gb|EFT41872.1| conserved hypothetical protein 39 8 Op 14 . - CDS 23691 - 23837 128 ## gi|315029941|gb|EFT41873.1| hypothetical protein HMPREF9496_01041 40 8 Op 15 . - CDS 23910 - 24659 630 ## EF1437 hypothetical protein - Prom 24682 - 24741 2.9 41 9 Op 1 . - CDS 24743 - 25057 195 ## EF1436 hypothetical protein 42 9 Op 2 . - CDS 25078 - 25575 324 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 43 9 Op 3 . - CDS 25591 - 26349 441 ## COG3935 Putative primosome component and related proteins 44 9 Op 4 . - CDS 26367 - 27068 353 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 45 9 Op 5 . - CDS 27068 - 28240 949 ## EF1432 hypothetical protein 46 9 Op 6 . - CDS 28241 - 30355 1516 ## EF1430 hypothetical protein 47 9 Op 7 . - CDS 30360 - 30650 346 ## EF1429 hypothetical protein 48 9 Op 8 . - CDS 30706 - 30921 244 ## EF1428 hypothetical protein 49 9 Op 9 . - CDS 30922 - 31089 149 ## EF1427 hypothetical protein 50 9 Op 10 . - CDS 31101 - 31331 246 ## EF1426 VrlI protein, putative 51 9 Op 11 . - CDS 31312 - 31872 317 ## EF1425 hypothetical protein 52 9 Op 12 . - CDS 31935 - 32081 221 ## EF1424 hypothetical protein 53 9 Op 13 . - CDS 32127 - 32312 103 ## COG1396 Predicted transcriptional regulators - Prom 32343 - 32402 5.6 + Prom 32229 - 32288 6.6 54 10 Op 1 . + CDS 32478 - 32801 425 ## COG1396 Predicted transcriptional regulators 55 10 Op 2 . + CDS 32822 - 33286 455 ## EF1421 hypothetical protein 56 10 Op 3 . + CDS 33304 - 34059 565 ## EF1420 hypothetical protein 57 10 Op 4 . + CDS 34118 - 34711 345 ## EF1419 hypothetical protein + Prom 34751 - 34810 6.0 58 11 Op 1 . + CDS 34867 - 35148 246 ## EF1418 hypothetical protein 59 11 Op 2 . + CDS 35148 - 36374 934 ## COG0582 Integrase + Term 36576 - 36609 0.2 - Term 36401 - 36448 -0.3 60 12 Tu 1 . - CDS 36485 - 37834 1873 ## COG0166 Glucose-6-phosphate isomerase - Prom 37938 - 37997 7.5 - Term 37964 - 38015 9.2 61 13 Tu 1 . - CDS 38016 - 39362 1571 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 39385 - 39444 5.4 + Prom 39384 - 39443 4.5 62 14 Tu 1 . + CDS 39500 - 40786 1199 ## COG2081 Predicted flavoproteins + Term 40788 - 40828 9.2 - Term 40770 - 40820 11.0 63 15 Tu 1 . - CDS 40827 - 42323 1352 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 42350 - 42409 2.0 + Prom 42488 - 42547 4.0 64 16 Tu 1 . + CDS 42611 - 43045 505 ## EF1412 hypothetical protein - Term 43020 - 43066 11.2 65 17 Tu 1 . - CDS 43071 - 44465 1674 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 44503 - 44562 7.4 + Prom 44439 - 44498 8.2 66 18 Tu 1 . + CDS 44607 - 45605 1181 ## COG1609 Transcriptional regulators - Term 45569 - 45621 14.2 67 19 Op 1 9/0.000 - CDS 45641 - 46903 1236 ## COG1668 ABC-type Na+ efflux pump, permease component 68 19 Op 2 . - CDS 46896 - 47795 276 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 47835 - 47894 6.0 69 20 Tu 1 . - CDS 47900 - 48157 234 ## EF1407 hypothetical protein - Prom 48247 - 48306 4.9 - Term 48248 - 48300 9.6 70 21 Tu 1 . - CDS 48309 - 50105 1956 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 50132 - 50191 8.2 - Term 50186 - 50238 10.3 71 22 Op 1 3/0.167 - CDS 50270 - 50584 541 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 50616 - 50675 7.1 72 22 Op 2 3/0.167 - CDS 50682 - 53048 2816 ## COG1193 Mismatch repair ATPase (MutS family) 73 23 Op 1 . - CDS 53159 - 53707 447 ## COG1286 Uncharacterized membrane protein, required for colicin V production 74 23 Op 2 . - CDS 53727 - 54170 551 ## EF1402 hypothetical protein - Prom 54202 - 54261 5.5 - Term 54388 - 54425 3.1 75 24 Tu 1 . - CDS 54439 - 56541 2655 ## COG2217 Cation transport ATPase - Prom 56601 - 56660 6.1 76 25 Op 1 6/0.083 - CDS 56927 - 57667 266 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 77 25 Op 2 23/0.000 - CDS 57664 - 58335 634 ## COG4149 ABC-type molybdate transport system, permease component 78 25 Op 3 1/0.500 - CDS 58344 - 59144 826 ## COG0725 ABC-type molybdate transport system, periplasmic component 79 25 Op 4 3/0.167 - CDS 59163 - 60134 1098 ## COG0303 Molybdopterin biosynthesis enzyme 80 25 Op 5 . - CDS 60138 - 60620 240 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 81 25 Op 6 . - CDS 60613 - 61047 385 ## COG2258 Uncharacterized protein conserved in bacteria 82 25 Op 7 6/0.083 - CDS 61050 - 62015 750 ## COG2896 Molybdenum cofactor biosynthesis enzyme 83 25 Op 8 5/0.083 - CDS 62021 - 62503 370 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Prom 62577 - 62636 5.3 - Term 62721 - 62763 11.9 84 26 Op 1 . - CDS 62794 - 63996 955 ## COG0303 Molybdopterin biosynthesis enzyme 85 26 Op 2 2/0.167 - CDS 64014 - 66734 2583 ## COG3383 Uncharacterized anaerobic dehydrogenase 86 26 Op 3 23/0.000 - CDS 66737 - 68035 1115 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 87 26 Op 4 . - CDS 68047 - 68535 647 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 88 26 Op 5 . - CDS 68523 - 69104 432 ## EF1387 hypothetical protein 89 26 Op 6 . - CDS 69094 - 69654 393 ## COG2116 Formate/nitrite family of transporters 90 26 Op 7 . - CDS 69703 - 69918 279 ## COG2116 Formate/nitrite family of transporters 91 26 Op 8 . - CDS 69934 - 70509 495 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 70561 - 70620 11.2 - Term 70602 - 70646 13.4 92 27 Op 1 . - CDS 70651 - 71679 844 ## COG0392 Predicted integral membrane protein 93 27 Op 2 . - CDS 71699 - 71965 267 ## COG3326 Predicted membrane protein - Prom 71990 - 72049 7.0 + Prom 71846 - 71905 4.2 94 28 Tu 1 . + CDS 72044 - 72139 75 ## - Term 72040 - 72100 1.8 95 29 Op 1 . - CDS 72111 - 73340 1932 ## COG2195 Di- and tripeptidases 96 29 Op 2 9/0.000 - CDS 73370 - 74488 1359 ## COG0327 Uncharacterized conserved protein 97 29 Op 3 . - CDS 74472 - 75188 841 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 75274 - 75333 5.2 - Term 75283 - 75330 9.4 98 30 Tu 1 . - CDS 75391 - 78033 3503 ## COG0013 Alanyl-tRNA synthetase - Term 78330 - 78368 -0.3 99 31 Tu 1 . - CDS 78382 - 79062 601 ## EF1378 transcriptional regulator, putative - Prom 79198 - 79257 6.1 - Term 79539 - 79589 16.1 100 32 Op 1 . - CDS 79611 - 80960 1492 ## COG0513 Superfamily II DNA and RNA helicases 101 32 Op 2 . - CDS 81023 - 82204 958 ## COG4767 Glycopeptide antibiotics resistance protein - Prom 82266 - 82325 7.9 + Prom 82147 - 82206 8.0 102 33 Tu 1 . + CDS 82347 - 82658 343 ## EF1375 hypothetical protein + Term 82659 - 82708 11.9 - Term 82644 - 82696 13.3 103 34 Tu 1 . - CDS 82719 - 83057 425 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism - Prom 83085 - 83144 7.6 104 35 Op 1 3/0.167 - CDS 83171 - 84124 931 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 105 35 Op 2 1/0.500 - CDS 84138 - 85457 1400 ## COG4109 Predicted transcriptional regulator containing CBS domains 106 35 Op 3 1/0.500 - CDS 85467 - 86141 788 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 86233 - 86292 4.0 - Term 86286 - 86338 15.1 107 36 Tu 1 . - CDS 86346 - 87779 1182 ## COG0477 Permeases of the major facilitator superfamily - Prom 87812 - 87871 4.0 + Prom 87887 - 87946 6.0 108 37 Tu 1 . + CDS 87971 - 88321 376 ## COG1396 Predicted transcriptional regulators + Prom 88470 - 88529 6.9 109 38 Tu 1 . + CDS 88658 - 89779 1279 ## EF1368 hypothetical protein + Term 89793 - 89837 9.1 + Prom 89985 - 90044 5.1 110 39 Tu 1 . + CDS 90077 - 90277 325 ## COG1278 Cold shock proteins + Term 90300 - 90331 2.1 + Prom 90307 - 90366 8.3 111 40 Op 1 . + CDS 90433 - 90528 149 ## gi|307279173|ref|ZP_07560231.1| hypothetical protein HMPREF9515_01492 112 40 Op 2 . + CDS 90529 - 91638 1028 ## COG1434 Uncharacterized conserved protein 113 40 Op 3 . + CDS 91655 - 92707 835 ## COG0628 Predicted permease - Term 92679 - 92721 10.1 114 41 Tu 1 . - CDS 92727 - 95138 2993 ## COG1257 Hydroxymethylglutaryl-CoA reductase - Prom 95298 - 95357 6.8 + Prom 95183 - 95242 6.6 115 42 Tu 1 . + CDS 95324 - 96475 1329 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase + Term 96507 - 96556 15.6 - Term 96494 - 96544 15.0 116 43 Tu 1 . - CDS 96548 - 97315 763 ## EF1362 hypothetical protein - Prom 97355 - 97414 10.6 - Term 97391 - 97440 9.1 117 44 Op 1 10/0.000 - CDS 97454 - 98056 929 ## COG2376 Dihydroxyacetone kinase 118 44 Op 2 9/0.000 - CDS 98069 - 99052 1395 ## COG2376 Dihydroxyacetone kinase 119 44 Op 3 . - CDS 99053 - 99451 572 ## COG3412 Uncharacterized protein conserved in bacteria 120 44 Op 4 . - CDS 99464 - 100603 1508 ## COG0371 Glycerol dehydrogenase and related enzymes - Prom 100689 - 100748 8.1 + Prom 100581 - 100640 5.8 121 45 Tu 1 . + CDS 100764 - 101750 895 ## COG4936 Predicted sensor domain + Term 101757 - 101790 2.3 - Term 101732 - 101790 16.1 122 46 Op 1 30/0.000 - CDS 101864 - 103270 787 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 123 46 Op 2 24/0.000 - CDS 103278 - 104897 2110 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 124 46 Op 3 28/0.000 - CDS 105040 - 106017 1331 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 125 46 Op 4 . - CDS 106020 - 107135 1593 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - Prom 107225 - 107284 6.0 126 47 Tu 1 . - CDS 107734 - 110343 2754 ## COG0474 Cation transport ATPase 127 48 Tu 1 . - CDS 110819 - 111400 705 ## COG3548 Predicted integral membrane protein - Prom 111439 - 111498 10.2 - Term 111502 - 111553 12.0 128 49 Op 1 7/0.083 - CDS 111571 - 113184 1577 ## COG0366 Glycosidases 129 49 Op 2 7/0.083 - CDS 113186 - 114811 1779 ## COG0366 Glycosidases 130 49 Op 3 . - CDS 114839 - 116605 1607 ## COG0366 Glycosidases 131 49 Op 4 . - CDS 116606 - 116680 70 ## - Prom 116706 - 116765 6.7 + Prom 116661 - 116720 13.2 132 50 Op 1 19/0.000 + CDS 116866 - 118116 1584 ## COG2182 Maltose-binding periplasmic proteins/domains + Term 118127 - 118174 7.0 + Prom 118118 - 118177 5.5 133 50 Op 2 20/0.000 + CDS 118202 - 119545 1187 ## COG1175 ABC-type sugar transport systems, permease components 134 50 Op 3 . + CDS 119549 - 120412 665 ## COG3833 ABC-type maltose transport systems, permease component + Term 120419 - 120458 8.1 - Term 120407 - 120445 5.4 135 51 Tu 1 . - CDS 120450 - 120938 502 ## EF1342 MarR family transcriptional regulator - Prom 121105 - 121164 8.6 136 52 Op 1 36/0.000 + CDS 121084 - 122391 1144 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 137 52 Op 2 . + CDS 122384 - 123424 1369 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 123426 - 123488 15.2 138 53 Tu 1 . - CDS 123461 - 123544 93 ## - Prom 123587 - 123646 7.2 + Prom 123452 - 123511 9.8 139 54 Op 1 . + CDS 123543 - 124043 568 ## EF1340 pheromone cAM373 precursor lipoprotein + Prom 124155 - 124214 8.3 140 54 Op 2 . + CDS 124240 - 124701 663 ## EF1339 hypothetical protein + Term 124707 - 124750 6.5 - Term 124695 - 124738 10.3 141 55 Tu 1 . - CDS 124744 - 125658 630 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 125762 - 125821 6.3 142 56 Tu 1 . - CDS 125827 - 126258 354 ## EF1337 hypothetical protein - Prom 126303 - 126362 2.7 - Term 126969 - 127025 15.3 143 57 Op 1 . - CDS 127078 - 127785 940 ## COG2188 Transcriptional regulators - Prom 127813 - 127872 7.3 - Term 127917 - 127966 6.1 144 57 Op 2 . - CDS 127992 - 132239 3620 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - Prom 132307 - 132366 8.3 145 58 Tu 1 . + CDS 132418 - 133026 481 ## COG1309 Transcriptional regulator + Term 133030 - 133076 14.3 - Term 133014 - 133068 14.0 146 59 Tu 1 . - CDS 133082 - 133261 234 ## EF1325 hypothetical protein - Prom 133286 - 133345 3.9 - TRNA 133416 - 133487 67.6 # Gln TTG 0 0 - TRNA 133497 - 133577 72.8 # Tyr GTA 0 0 - Term 133606 - 133662 7.1 147 60 Tu 1 . - CDS 133674 - 133907 360 ## EF1324 hypothetical protein - Term 134000 - 134039 6.0 148 61 Op 1 . - CDS 134054 - 135523 2158 ## COG2268 Uncharacterized protein conserved in bacteria 149 61 Op 2 . - CDS 135540 - 136064 629 ## EF1322 hypothetical protein - Prom 136095 - 136154 7.0 150 62 Op 1 36/0.000 - CDS 136257 - 138893 2648 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 151 62 Op 2 . - CDS 138903 - 139604 344 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 139734 - 139793 5.7 + Prom 139653 - 139712 6.0 152 63 Op 1 . + CDS 139765 - 140424 646 ## EF1319 hypothetical protein 153 63 Op 2 . + CDS 140438 - 140824 618 ## EF1318 hypothetical protein + Term 140829 - 140864 5.0 - Term 140817 - 140852 5.0 154 64 Tu 1 . - CDS 140866 - 142014 1485 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 142041 - 142100 3.1 155 65 Tu 1 . - CDS 142115 - 142942 945 ## EF1316 Cro/CI family transcriptional regulator - Prom 143108 - 143167 6.5 + Prom 142869 - 142928 4.6 156 66 Tu 1 . + CDS 143120 - 143296 300 ## EF1315 hypothetical protein + Term 143314 - 143371 19.5 - Term 143302 - 143359 17.0 157 67 Tu 1 . - CDS 143362 - 144579 1052 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 144634 - 144693 9.6 - TRNA 144823 - 144909 56.4 # Leu GAG 0 0 - Term 144930 - 144972 9.6 158 68 Op 1 6/0.083 - CDS 144978 - 145463 322 ## COG3091 Uncharacterized protein conserved in bacteria 159 68 Op 2 . - CDS 145466 - 147658 195 ## PROTEIN SUPPORTED gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P - Prom 147687 - 147746 5.6 160 69 Op 1 . - CDS 145466 - 147658 874 ## PROTEIN SUPPORTED gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein - Prom 147687 - 147746 5.6 161 69 Op 2 . - CDS 147756 - 148490 804 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 148525 - 148584 11.0 - Term 148560 - 148607 11.5 162 70 Op 1 45/0.000 - CDS 148623 - 149378 712 ## COG0842 ABC-type multidrug transport system, permease component 163 70 Op 2 2/0.167 - CDS 149350 - 150006 494 ## COG1131 ABC-type multidrug transport system, ATPase component 164 70 Op 3 1/0.500 - CDS 149982 - 150236 241 ## COG1131 ABC-type multidrug transport system, ATPase component 165 70 Op 4 . - CDS 150220 - 151329 554 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) Predicted protein(s) >gi|308151755|gb|GL476267.1| GENE 1 25 - 2682 2238 885 aa, chain - ## HITS:1 COG:no KEGG:EF1473 NR:ns ## KEGG: EF1473 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 884 1 884 1721 1471 98.0 0 MADALRSSVIELDWKINNRSLERANEETDKILAKAARMEGTYQNSAKSIDGATTSLKRNS EGLKQNTDKVVQFGNRAKDSMQKTTNSAKQTEKQVKDVGNQFDKSKNSASVFAQSSATSL KVVGKAAKGVQTSIGHIGTVATKASDVAWNAFTKIRNGAMIAGAAIAGAGKKAFDYASDT NEALNKVEVAFGDNNKVVEDWSKSTLTNIGLAQGTALDLAATYGDMSTSMGIGTEEAAKM STSLVDLAGDLASFKNIGIDRVNTALNGVFTGETEALKGLGIVMTQTNLEQFAMASGALQ SSVDNSKAAKNAMAREKAQDRLNKAIKKHGENSIEARDAQLKLTEAESKGEEVQQAKLDS LSQEELVRLRYNYVMSKTKNSQGDFARTNTEAANASRVFTESIKETSAKLGQGLLPIFTP LIIKATDFVKKGEEIPDMLENVGAKVEPTAKQVMKHFGQAKDYFVDEIIPTAKKVGKAIG PGIAEGAKNMFNVMDKGFKYIIKPSIRILKEFTDENPVAMKQVGKWATYGIGGLLGFKLV GKPLLGVSKGILGIIGKLEKLGNTAQREAFKTRKALEDVDSAAQKASTPTHTTASPNIQE SLPVGSVGKIGKGAKLFGGVRRFAKSVPLLSYISAGLTLTQINKNNKFEKIGDSLGSIVG GALGAKAATLAGAKLGAVAGTTFGPIGTVIGGILGTTAGSIFGSKFGKKLQEKWPDISKK ISELWESSKDNFLLGPLVQGIDKAVKKSKSGIKEIKASAKDLFEKPFDNTTKSGNGVSKA TAKRMNSFMKNYELLVDQDTTGKIEGRVLTNEEVTKRYKALEDMQNQVTKQLNKKKDKSN SNLDKLASMGILNEKDAQGAKAAADELAKVRTNMFSEKVQDFKKY >gi|308151755|gb|GL476267.1| GENE 2 2685 - 2825 143 46 aa, chain - ## HITS:1 COG:no KEGG:EF1472 NR:ns ## KEGG: EF1472 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 46 21 66 66 85 97.0 7e-16 MFRWLPVIAGIATKDEVEIATAEELAVWNEVAYQKINLTKSRGGVI >gi|308151755|gb|GL476267.1| GENE 3 2866 - 3198 497 110 aa, chain - ## HITS:1 COG:no KEGG:EF1471 NR:ns ## KEGG: EF1471 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 211 100.0 9e-54 MTKKDEVKELEVKNNIPEAEKKPFNKFGKQEKHTVEDVEYTFQFPGTRAAQAILDNSKGP SNTFSDVAYHSQLMDSVIVTPKLNWDYWDEHEGYREVMALADNFLGRMLN >gi|308151755|gb|GL476267.1| GENE 4 3251 - 3649 494 132 aa, chain - ## HITS:1 COG:no KEGG:EF1470 NR:ns ## KEGG: EF1470 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 234 100.0 6e-61 MQSMTTYDAKEVSTIIDNVVQFGFQDGDMVSFSKDNSYIEVQTDAQGQSSAAKNNDNLGT FTINLSQNSPCNKQLMALANGRKEFAISVTHSTEKAWASKAYIEKTPDGSFGKGVPTRSY TIKALDYKHEYN >gi|308151755|gb|GL476267.1| GENE 5 3665 - 4702 1174 345 aa, chain - ## HITS:1 COG:no KEGG:EF1469 NR:ns ## KEGG: EF1469 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 345 1 345 345 634 99.0 1e-180 MIEKITDVNVKIDIMHPQPIVGLGNPAIFVQGSTQNYKEYTSLETLAKDFATTTTVYKKA ETIWKQENKPQTIAVVTFAADTPTSPEQPDSLIAGSGIIAAATSYFYNDWHFALLANFVE ADALALSNLIEENEFKFLVIQTATVDELTVFTGNNLTIGLIHPLEEFLDAALIGNTASLT VGSVTWKFRHNLVGITPNTLTTSQLQAIEKANAIAYVSKAGIPQTSEGKTMSGEFIDALH GDHWVKSNIETNVQRLLSTTDKLTFDSNGIALLDTTVANVLETAFNNGIVDIVDETGVGN YSVTALGRQDLNPDDIAARNYKGLSFKYKRSGAIHTVDVTGTIEV >gi|308151755|gb|GL476267.1| GENE 6 4699 - 5175 349 158 aa, chain - ## HITS:1 COG:no KEGG:EF1468 NR:ns ## KEGG: EF1468 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 284 97.0 7e-76 MPQINGTFSYELLADELIAIVKKSTGLQLIESSTAGPQPDKPFFSYEVISPYIPVTIDVT DNEVFELVVSIKCHTDSSIQALNLSEQLRKHLNGFSVKVDLQNSKIALVSTTQSKKRDNF ISIDYERLAGFDARFRVQDSYVDNAVIIENIELQEENK >gi|308151755|gb|GL476267.1| GENE 7 5162 - 5521 313 119 aa, chain - ## HITS:1 COG:no KEGG:EF1467 NR:ns ## KEGG: EF1467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 233 99.0 2e-60 MQRMNFSSLIETFAVDFQLVLPSVEGAGKYIHGEWFPTNEEPKTVSGAIIPYDNRTIYQS GGTLTSSDRQLAYVGSIPLGSKIIDMGKEYKVESEEPYAEHYADVNLYRLKAVTNNATN >gi|308151755|gb|GL476267.1| GENE 8 5521 - 6018 187 165 aa, chain - ## HITS:1 COG:no KEGG:EF1466 NR:ns ## KEGG: EF1466 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 165 37 201 201 310 98.0 1e-83 MAMLAQVHEFGVTIRPKGRFLVIPLMKKYRGKSPRQFDLFFMQTKENHKFLVRNKGKDQL EFAYMLAEQITIPERSFIRSTFDEQAKAWSDYALNLVKKLIAGKMTAEELTNKVGARMQR DIQRTIRNLSYPPNSPITVNNKKSSNPLIDTGKLRQSVTYKVVKG >gi|308151755|gb|GL476267.1| GENE 9 6123 - 6464 180 113 aa, chain - ## HITS:1 COG:no KEGG:EF1465 NR:ns ## KEGG: EF1465 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 216 98.0 2e-55 MPKSTVENVRLTAAELAGVNNDSIKLFIDDAWLEVDALPFKEDVKEKACRYLACHLAVLN NQNTKSEQVGSLKKEYSGFHSTFTDLKRTVYGQEYLRLYNEYAKKGSLSLVVI >gi|308151755|gb|GL476267.1| GENE 10 6476 - 6862 548 128 aa, chain - ## HITS:1 COG:no KEGG:EF1464 NR:ns ## KEGG: EF1464 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 198 99.0 5e-50 MLVHNKGSYIRHIGNVRLIPGVNDLDNSDAEKFIKGMELPLNKSLERLGEIEILDHITKG KSKKAVGFTELSANKAVESIADTFDLELLEKWLEEEQANKNRTTVVKAIENQIDDIKNPD EDSVVNPE >gi|308151755|gb|GL476267.1| GENE 11 6882 - 7763 1000 293 aa, chain - ## HITS:1 COG:lin1726 KEGG:ns NR:ns ## COG: lin1726 COG4834 # Protein_GI_number: 16800794 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 293 1 301 301 302 51.0 6e-82 MGNDVTATLEARDLQEIDKVIYQAPQEELVARTMFNVKTDINPGAETYAYNVMTRSGAAK IIANGADDLPLVDIDMKRYQSPIFTIAAGIRYSRQEIRQAQMMGTSIDATKAEVARRTIA EKENSFIFVGDPKVNHKGVANAEGIQVINSPKKWKEMTSEEIVEQLRTSRAKITIIPGFK GSSLKLMVAPEQYEELNRRYGEYDARSIMKVVQENGWFSSIEQVYDLKGVGTDNSDSFII MDTKPSTCEILLPEDIVRLEVEWAFPNWKVPFVERCGGALIRTPYAIVRVDGI >gi|308151755|gb|GL476267.1| GENE 12 7784 - 8254 878 156 aa, chain - ## HITS:1 COG:no KEGG:EF1462 NR:ns ## KEGG: EF1462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 254 98.0 1e-66 MTIPYPEKYMKPELGIGKLANYQGVQADSLVVGVGGLGFGVGVQVTEDVATTYKDGQFYG ISYAKNYVEEIPYGDAEKVGKYKEHEMVPILRKGAIWVKVDEDVLAGENAKALSTGNFGK ATISSDPATTPSDTVIGTFKTSASAGSLAVLQINLP >gi|308151755|gb|GL476267.1| GENE 13 8257 - 9360 1006 367 aa, chain - ## HITS:1 COG:lin1728 KEGG:ns NR:ns ## COG: lin1728 COG3566 # Protein_GI_number: 16800796 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 367 3 369 369 338 54.0 8e-93 MVIRYDKAFIQDFKETDEGYLTITACPITRPGVFPYRRTDGGLSMEAKLPDELFSKTTVL SANAKPMTDDHPTEPVTAANYNKYSKGMTHNDAHVLDNKLLVSFTITDAETIKKINDGKR ELSIGFQADVTKETGVYNGMQYDSVQRNMQINHIAIVDEGRAGHEVAIRGDSAAFMIDTK DKQTGGSNMPKLIIDSKEYEVDPVVKANYDAMQAKLDAAEQRSSNVEKVEGERDALQSQV DNLTKELQTAKENSLTGDSLDKRVQARVELVSAAKKFLGDSVDLVGKTDRQIKEAVITKT NSNFKGDGKSDDYINAYFDSMTAMATEKGFTASAVFNDAKDKDKEAEEDIEKQKNNRLNM NKKKEGK >gi|308151755|gb|GL476267.1| GENE 14 9373 - 9582 419 69 aa, chain - ## HITS:1 COG:no KEGG:EF1460 NR:ns ## KEGG: EF1460 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 69 97.0 4e-11 MAKEKKASSKEENKKELSKTTQKTTHTVSEGETASEIATRYHMSLRKLLDLNELESINQV TEGIRLLVE >gi|308151755|gb|GL476267.1| GENE 15 9575 - 9862 260 95 aa, chain - ## HITS:1 COG:no KEGG:EF1459 NR:ns ## KEGG: EF1459 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 167 98.0 1e-40 MDSQKFIDLCKKRVVDFANSQLDYTDQKKISESDIYVVWLAKTLQNNKALLSTNLFDGMY YEVTFNGDKNELYFDAYKKWRNIRFDVTEGGDQNG >gi|308151755|gb|GL476267.1| GENE 16 9917 - 10081 213 54 aa, chain - ## HITS:1 COG:no KEGG:EF1458 NR:ns ## KEGG: EF1458 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 62 100.0 7e-09 MNKNEKNKRRWEDVPKSKSLGYPDEMTKKEIDTSKKKDKDFMQQLKKSLKEKEE >gi|308151755|gb|GL476267.1| GENE 17 10074 - 11318 770 414 aa, chain - ## HITS:1 COG:lin1730 KEGG:ns NR:ns ## COG: lin1730 COG2369 # Protein_GI_number: 16800798 # Func_class: S Function unknown # Function: Uncharacterized protein, homolog of phage Mu protein gp30 # Organism: Listeria innocua # 5 262 7 264 469 212 42.0 1e-54 MKNNPKTRYPLRLEESYAKNIQKALKEIEKVSLYEFDKYLAPMIDENKLVNDSKFIQDGL FDAASKLIRKAQTYFLGILQNRTAQKIVRKHINSVNAFNKSNVNSQLSARGINPLQTEKW LDSYVQAKIAENISYVTNIRDDYSKKFEQVIYRGITEGKSSNEIREELVHQAGMSSDKAA FIARDQTGTILGQMNSERQKRAGFQAFRWSDSGDERVRDSHRERNGKIYFYADNPLLPGE EYNCRCVAEPVDDEELLEESIDLGLSNQEEHAVKTYVSSEAYKLNDKLRNGYQLDESDLK LIDNLDKALDKMTNYDGEVTRSMFFDSSDDLVKFANNYNLNDVVQFPEYISTTKDIYSEQ DSLRFVIMSSTGKDLGSYNKSEKEVLFNRDAKFIVKDRYLLDGKPYIVLEEYHE >gi|308151755|gb|GL476267.1| GENE 18 11308 - 12702 1177 464 aa, chain - ## HITS:1 COG:lin1731 KEGG:ns NR:ns ## COG: lin1731 COG3567 # Protein_GI_number: 16800799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 458 5 456 461 509 56.0 1e-144 MGNIANEAKLLKLDGKAYRSDFMLGNGKGHARDNLSRQRPGMSKRLSHSQLESLYSSNSM AKNIVDIPAEDLTRNGWSLKMQDDKVKALYESKLRQLKAKERLQQLFTYERLYGDGFVSI GTIEKREYSLSEPLDFENIKSVPYINAFSGKKISNRIIDEDVFSPNYGQIESFEVNNRSN NSRIQLLNNTTYSTATKIHRSRVLHQQNLRFEDELEGSSLLENLYDILTVADTSVWSVGQ ILYDFIFKVYKSSDVRSLTAADKAEIAMKMDYKFRTEALAIIDSEESLGKESSPVSGIGE LLDFVWDYLAGAARMPKTVLKGQEGGTVTGAQYDVMNYYSRITAIQENQLRPHLEYLMRC LMWAEDECGGRLDPDSIEWSIEFNPLWNVDSKTDAEIRKLTAETDKIYIEAGVSDPEDVH EARFGRFGVTETSKFNADSLTPDELDIMAAAVYTNYKRVRDHEK >gi|308151755|gb|GL476267.1| GENE 19 12725 - 14161 1056 478 aa, chain - ## HITS:1 COG:lin1732_1 KEGG:ns NR:ns ## COG: lin1732_1 COG5410 # Protein_GI_number: 16800800 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 304 8 310 310 367 58.0 1e-101 MDQEQLDALANAALEELARRNYGDFFYLSHGKQWDLLRHQKYITDRLQKIIDGEQKYYII EIPPQHGKSTVITETFPAYYLMRNPDSLVMVVSYSKELFQKFGRKNREKFRLFSDQLFGL QISSETSSVSEWGVEGHLGSLYSTSILGGATGRGARLLIIDDPIKNRAEAESKTIRDKIY NEWQDTFYSRLTADASVIVIMTRWHEDDLAGRLLKEQTLPWEEIKIPAIAEDDDLLGRKP GEALAPEIGKDEEWAAKTKAVTGSRGWAALYQQRPTPAGGNIFKRSWIKFYVPTLSKKIE LSLGDDVVILPRLFDRQAQSWDCTFKDTETSDYVSGQVWGKKRADFYLLDRHHERMGIVE TMKAIDAMAAKWPKARGIYIEDKANGTAVIEMLKNELSGIIAVNPEGGKEVRANAVTPIW EAGNVYLPHPLVCPWVDDFINELVAFPNAEHDDDVDSMTQILNKMIGKVSLRERYLDN >gi|308151755|gb|GL476267.1| GENE 20 14142 - 14867 318 241 aa, chain - ## HITS:1 COG:no KEGG:EF1454 NR:ns ## KEGG: EF1454 # Name: not_defined # Def: terminase, small subunit, internal deletion # Organism: E.faecalis # Pathway: not_defined # 1 241 1 241 241 382 98.0 1e-105 MARSEKEPSNKTKERYDLFVDCYLQTFNATQSAIKVGYSQKTARQQGHKLLTNAYIKEKI QLEMKRLRDRMKDEGLRSFSMLLDIAMQTEGKIQAHNEAEIAIDKIKSELSDLELEMLKA NNDLEKVQKEADAIDGRKKEMRSHKRSLLEQIDSIKKEYFELNLERVLLLNELSKHQSRY LDAKEWEKLQSLKKSIFQDILDRGGFKAIDQIQHSGKVDVNPLANLSEEELRRLANGPRA T >gi|308151755|gb|GL476267.1| GENE 21 14882 - 15094 235 70 aa, chain - ## HITS:1 COG:no KEGG:EF1453 NR:ns ## KEGG: EF1453 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 7 76 76 103 98.0 2e-21 MGTKEEHEKIDILGLELEKEFEDAEDYEQYRKIIRATMAQWLKNLKNGEIKLTSVSDLKT LIEADKILRS >gi|308151755|gb|GL476267.1| GENE 22 15235 - 16503 982 422 aa, chain - ## HITS:1 COG:BH3535_2 KEGG:ns NR:ns ## COG: BH3535_2 COG0863 # Protein_GI_number: 15616097 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Bacillus halodurans # 159 415 3 285 292 204 39.0 4e-52 MQIEKMKLSDLKAADYNPRVDLKPGMQEYEKLKQSILEFGFVDPPIYNIQTGNLVGGHQR VAVAKELGLFNEIEVSVVDLPLDKEKALNVALNKISGRWNEEKLSILLNELDDEAVNLTG FDTEEVDSLLASFNYEEDIEKPIIEDDFQVNEFIENHPEAKTKLGQLWKLGNHYLLCGDA TKPSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMNDDMSDEEFDQFLMSV FQNYSHAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFGWSQYRWQHE PVFYAHKKKQAPAWYGDRKQTTVWQDDLVEDLPATIWKVPRDDVATYYHPTQKPLSLIAI PVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCDVIIERFEKSTGIIAEL VE >gi|308151755|gb|GL476267.1| GENE 23 16548 - 16817 352 89 aa, chain - ## HITS:1 COG:no KEGG:EF1451 NR:ns ## KEGG: EF1451 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 89 1 89 89 127 98.0 1e-28 MKQFGNENYTVVINEQEINVILENNDSVSINFVNMPNQENAYILSINPKAYTELAIDEYQ ELLKRYKEAEIAAIEIKNCLEQEYLLTII >gi|308151755|gb|GL476267.1| GENE 24 16919 - 17122 139 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382336|ref|ZP_06628275.1| ## NR: gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01743 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01114 [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01743 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01114 [Enterococcus faecalis DAPTO 516] # 1 62 1 62 80 86 66.0 7e-16 MNYWYISLSKNYPPKITREVKLNRDFAIVECIRPVSKKMSRKLDLIYIGYGFFKDSHIQN NFKSHIP >gi|308151755|gb|GL476267.1| GENE 25 17557 - 18141 533 194 aa, chain - ## HITS:1 COG:no KEGG:EF1450 NR:ns ## KEGG: EF1450 # Name: not_defined # Def: positive control factor, putative # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 313 98.0 3e-84 MLDQHGREILIQEYKSDLKDASRQHRRIAKKKYQIEKNGRLETIDDRTAEDIKEQSIYAE IISSTKYALYWLEHGIERPLDEEAAKKIPKYRRAKHITNMDKISYEIYCNQYESARNYPI TEEKQEMLIQLKELLSTFSERERDLFDYIHNQQLTYAEAAEKMDIKVGTAKSMSQRIRNK IDAYFEYGHQISLF >gi|308151755|gb|GL476267.1| GENE 26 18242 - 18421 122 59 aa, chain - ## HITS:1 COG:no KEGG:EF1449 NR:ns ## KEGG: EF1449 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 103 100.0 2e-21 MDFKPAKLSELENFDGKHVIILVSNGQTKVADLPEHGIVEVISHAGKVTFIEQKIKEKF >gi|308151755|gb|GL476267.1| GENE 27 18388 - 18558 83 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADQLHWRCNIGKKKSKIKKKKRRLQEKAVANGTINMKKNNQRWIMWTLSQPNYPN >gi|308151755|gb|GL476267.1| GENE 28 18521 - 18712 243 63 aa, chain - ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 62 1 68 77 62 50.0 4e-09 MLSYPEVYILGRQVDGIYVEYMRRTFYTLSDAKRNADFYNKHYNGEWKILKYGRPITLEV QHW >gi|308151755|gb|GL476267.1| GENE 29 18706 - 19023 481 105 aa, chain - ## HITS:1 COG:no KEGG:EF1445 NR:ns ## KEGG: EF1445 # Name: not_defined # Def: replicase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 168 90.0 7e-41 MKIIAKGRGTGKTTELVKESARTGQYILAANKAHVQAIEQIAEKVDVTIPYPVTVDEIVR MNRFTCASSIQRDGLLVDEAIMVLSKLIGLKITGATISLEGEQQC >gi|308151755|gb|GL476267.1| GENE 30 19037 - 19468 388 143 aa, chain - ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 143 104 184 184 130 79.0 1e-29 MPYLTNKEVQIINFLIKDGIKAFDFRGGFRDCWFTVKESNELANKVEKISDIIFERNRDE FWYENEDNDRVHHLKILPKYFEAVVSGDKCFEIRRNDRGYKVGDILRLNEYQDGQYTGRF HVVEITYITDYGQQDGYVVLGIK >gi|308151755|gb|GL476267.1| GENE 31 19468 - 20004 448 178 aa, chain - ## HITS:1 COG:no KEGG:SPH_0092 NR:ns ## KEGG: SPH_0092 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 46 124 34 111 166 68 51.0 1e-10 MNKQELIKKWENKGGASVYEMCTFPIRPSETEMYIAGYGVARKEILDDLKQLDEPKKVVV PKFVAEWIEYAKKKGDSLIDSFNPWDLYGAEYIDATRWIDNNQETYALAWVNGYEVEKQQ LYYVFDTTTKQYLGVDKVLNKTFWLSSQNSGARTPLTEQEIKAIDERYWPFAVKVGNE >gi|308151755|gb|GL476267.1| GENE 32 19997 - 20356 477 119 aa, chain - ## HITS:1 COG:no KEGG:SPN23F_15600 NR:ns ## KEGG: SPN23F_15600 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 1 111 1 102 105 74 37.0 1e-12 MSKQIETAMNNIYKFTIVEENGKNKVHTPKMDLPECVKERIKFFGKYAEDGLSFLGCIEL IMAEDEAKLKKDFEIGSYEDYLPAGEEFKQWRDEIALRSLHQMEIAVALIYGLGDVSDE >gi|308151755|gb|GL476267.1| GENE 33 20370 - 20648 418 92 aa, chain - ## HITS:1 COG:no KEGG:EF2120 NR:ns ## KEGG: EF2120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 89 180 180 142 89.0 4e-33 MKFYEMKEPYYALIAAEDEKQCLKLYKDIVCDVEDEKEFFDDMKTIDKYEAFKMLAKSHT EDGDKTGAEEAFNQLENLEENGEVLLIDGSLI >gi|308151755|gb|GL476267.1| GENE 34 20645 - 21127 574 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315029936|gb|EFT41868.1| ## NR: gi|315029936|gb|EFT41868.1| conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 160 1 160 160 285 100.0 6e-76 MSKEQILKGWVAKIGDCDPAIHLLKSLMHRQDYNEFDLENRKLGSLILNALSALGYENIS DEEEDFENGINDKRVAENVIMQLYASDKQEKLESIKEKVVMDSMGLLEFQENWYGYSTWT IEGYEIETFTLGGHNLLEILEGLEDKFIYLVIDRFKEEEK >gi|308151755|gb|GL476267.1| GENE 35 21124 - 21558 359 144 aa, chain - ## HITS:1 COG:no KEGG:EF1440 NR:ns ## KEGG: EF1440 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 142 1 144 145 190 72.0 2e-47 MIPKFRAWDTYEKEMLENVTPLFDDSNSMMAIITDFQIKGSPGTSEIEIGSYDTTFNWDE FPYVIMQSTGLKDKNGVEIFEGDVLYYIPFETHINNSIIVFEKGSFCKKMLRNGKLTSVK FIDSEEYEVIGNIHENPELLEGTE >gi|308151755|gb|GL476267.1| GENE 36 21564 - 22517 411 317 aa, chain - ## HITS:1 COG:CAC1222 KEGG:ns NR:ns ## COG: CAC1222 COG0270 # Protein_GI_number: 15894505 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Clostridium acetobutylicum # 1 315 6 306 314 351 55.0 1e-96 MIQILELFGGIGAPRKALINLGIPHKSIDYVEWNEKAVRSYNAMFEKEIKYQPQSVVGWN LKPDILVHGSPCQDFSIGGKQYGGNVEDGTRSSLMFETLKIIENFGIWKPQVVIWENVPN VFSKKLVGAFQKYLSDMEKLGYFTTYKILNAMDFGIPQKRKRVFAISKLDGEPFNFDLLK HRPLKPLGNFLEVTTDQKYLVTQPSMLSKIRSKSSLANGFSGRLEVVNDFVYTITTRQDR CPNSGLIEYEKNKYRILTEKECWRLMGFDDDDFNNAKKANPGKNEKYKNTTLYHQAGNSI VVPVLEAIFECILPESE >gi|308151755|gb|GL476267.1| GENE 37 22578 - 23336 364 252 aa, chain - ## HITS:1 COG:lin0088 KEGG:ns NR:ns ## COG: lin0088 COG0338 # Protein_GI_number: 16799166 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Listeria innocua # 1 252 14 265 270 362 66.0 1e-100 MSDLIISQMPKYKAYLEPFMGSLAVFLNKPRVTLETINDIDARLVNLFRVMRDDPEKLQY LIYHTLYSREEFIRSNEIAVDPVEDARRMAVRLWFGVGGKTVAMPGFRKNISWNGPYTAY EWTDMYSRIGYAAARLKNAQIECKDGIQLIKEHNDPDTLIYCDPPYIGSSLVSDHYENGF TNRQHEELLTTLINHQGKVILSGYDSELYNDILKDWNVIKQQTKVGITTKKKSNRTEVLW LNYEPNEQINLF >gi|308151755|gb|GL476267.1| GENE 38 23433 - 23660 216 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315029940|gb|EFT41872.1| ## NR: gi|315029940|gb|EFT41872.1| conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 75 1 75 75 120 100.0 4e-26 MKFKNVELISKNGIDKKIELVDIDELTKEEYVMLRNLGLGDQLSHKTSMTLNEIEIKLDI FGKVSISQGFYVLIN >gi|308151755|gb|GL476267.1| GENE 39 23691 - 23837 128 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315029941|gb|EFT41873.1| ## NR: gi|315029941|gb|EFT41873.1| hypothetical protein HMPREF9496_01041 [Enterococcus faecalis TX4000] # 1 48 17 64 64 73 100.0 5e-12 MATFDTEIFAESFKNLTSILNDDKYKYKFVKIGDVIIKPVEITRIIKL >gi|308151755|gb|GL476267.1| GENE 40 23910 - 24659 630 249 aa, chain - ## HITS:1 COG:no KEGG:EF1437 NR:ns ## KEGG: EF1437 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 249 1 249 249 467 98.0 1e-130 MGKNLLREKKRLIRQKILFLTGENESWMKNPEIVKEVQRLSKQLESDLISDKRPLPSLDP DKLTKEKYQHFLDLGYQVGDIKKALGLGTTTFQNWRKANGIENKINRKQKKEESKLMKFN INTASLLLPGTFGAEGKECITISKSGLALSGPVVRRLNKPEWVQLYLDESRLALFVIPCK ATDEGARSCVNPKSKKKAGYRKSWSGSILEKVSKASKMDIENHRYHVEPESVEGYPTALG FDLTKAVKN >gi|308151755|gb|GL476267.1| GENE 41 24743 - 25057 195 104 aa, chain - ## HITS:1 COG:no KEGG:EF1436 NR:ns ## KEGG: EF1436 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 213 99.0 3e-54 MSIALPKQKHLRGPLLDYLRIAEDNGDLFAWRKACEIGREIFSGDFSDNAKPLIVIYKDG SSEVFNTRADVISACRIGNETLRKCLETGEQDRLGRCYDYAILE >gi|308151755|gb|GL476267.1| GENE 42 25078 - 25575 324 165 aa, chain - ## HITS:1 COG:BH3539 KEGG:ns NR:ns ## COG: BH3539 COG3331 # Protein_GI_number: 15616101 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 7 141 12 146 168 73 33.0 1e-13 MKAWSQFEKMIEQTNEWYCRNRKGTVAKIPNGTKTIRVGGKPVVIPTNKTGCDFIGHLKG RPIAFDCKSTENKTAFPFYVGNKPMLKDHQKNFLKDFKLSGGTAFLLIQFNKSHQVFLVD VDDYLNMQKNLGRKSIPLDYLKEFEVRQHGYYSHYLEKLEQNYWQ >gi|308151755|gb|GL476267.1| GENE 43 25591 - 26349 441 252 aa, chain - ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 121 247 104 234 239 85 37.0 1e-16 MNYLQQILAFDDYLLYKQKLSSGQIALWRALMSINNKAGWATWFTAANATLESLSGLSRS GINKNRNALKQLGLIDFKSNGRKATSYKVCVLYTLNSAQESTQQSNDKVTLKSTTQSTNS GTLIKHKQNINTNNSFSPETDKNKLNIYAAVEQNFGRPLSPIEMEMIKQWQTEDGYPDDL IHLALKEAVLNQAFSLKYMDRILLSWERKGIKTKNQAIKKISEYNMRNDQEEISVDSIPK VTMHNWLNPEGN >gi|308151755|gb|GL476267.1| GENE 44 26367 - 27068 353 233 aa, chain - ## HITS:1 COG:lin1243 KEGG:ns NR:ns ## COG: lin1243 COG1235 # Protein_GI_number: 16800312 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 2 232 22 252 252 160 34.0 3e-39 MIEINIQGSSSAGNNYLLADGNSSLMLEAGLKPKDIMKQGINFSNIQGLLVTHEHGDHSK YINDILLAGRFDVWASRGTLEGLGINRRSHILKANQQQKIGDWLVKPFATIHDDKKARAR EPLGFLILSPSGKKIVFATDTNYLPKTFKDVTHWLVECNHDIKLVRQSKLPKSVQDRILR THMSIDACKKFFQSTDLTKTEEIYLIHLSDKNSDPEKFKEEIEKITNKKIIIA >gi|308151755|gb|GL476267.1| GENE 45 27068 - 28240 949 390 aa, chain - ## HITS:1 COG:no KEGG:EF1432 NR:ns ## KEGG: EF1432 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 390 1 395 395 617 86.0 1e-175 MTHELAENKIYGNRLTKINDTFMPQVESQLLSNGINMTEYQKQCVISAIQGINTMLTNSN LSINDVDSTNMTETLMTIAALQVNASAIPREVYFQTRNVNRKQFGQSDNWVKVIEMGIEG DGNDAILSKFGRNVKHVHRHWEVREEDHFSYPGYKGLSVTDPEWGPTGKGKVVRVVYPIE MSDGTIEYHIAEREDVVKNLIAHINQNLMNETFGIAKKKKDASYQQKQEIDNKKQEIMNN LKTMALDDILDSQEYQSYISPAWKSPQSRESMIVRKMRNNIVKKIPKNFENAYVAMQYQS QDDEVVKSVRKDVTEQTAQEVFDFDGEPTEVKQEAVKRDKETAADETIIEPEEPIQKATT NQETENEPTQTAFFDELTTNIASETDGRGF >gi|308151755|gb|GL476267.1| GENE 46 28241 - 30355 1516 704 aa, chain - ## HITS:1 COG:no KEGG:EF1430 NR:ns ## KEGG: EF1430 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 702 1 702 707 1132 97.0 0 MKNISLESIRIHNFKGISDLMIEPNGKSIDIFGDNDAGKTTIYDAFLWCLFNKDSKERTK IQWRPLDENSEPIRGKQTSVTVVLAINGQAKEFEKVRGDKEVIKRNSEHKSYEMFTKYLV DGLETTTKKAFDDEVEKVLDQDTFKNLTSVTYFCEQLVADERRQKLFEYFGSKTDEEIIN ETPSIHQLKEIIGNDDIKTARDRVLQDQKRINETLKNIPVKIEGIQAALPDIENINKEQL LTTRNELTLKKNDIENQLVTIRNGGNISELIASLNTKQEELTAAKLKHDNAQNARINGIE QGKSKLFADLNKAQKTYADEESSLNVTERLVSIKDNELIALNKKHEELYDKYDEVEAEEF TGGLVYTKLSFNENLLICQHCNRPYDVKDQDDMKRHHEEEERKRAEEIELTNKEIKAQFE ADKQIKLSEIREKGIQNNKDREALKKEINELKEQLLIKTEAYNIAKKHLEDVKENLADVE QQISSLKLDKIPFEATEKYSTITKEIKKLQEYITQSNEAILEQTSAKTSEITEIDKEIAK IDEKLALLKEYERQLSIIEDFNEQERQLSHKKGEVLQKLVLFEEFFITKQNMLQEIINSH FSVVKWKLFDFFEDGGLNEAVCEPMIDGVPFSSLNNGSRMQAGLDVSNTLMKQEGYIVPI FIDNAEGLTNHNRDSVQVDTQVIAMYVNEDDKTLRIKNHKTEGK >gi|308151755|gb|GL476267.1| GENE 47 30360 - 30650 346 96 aa, chain - ## HITS:1 COG:no KEGG:EF1429 NR:ns ## KEGG: EF1429 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 171 100.0 7e-42 MDNVSNKLTMSKRFEEWFKNATENCAERELYATALIARMDWLVDPIISKSYRYDLTTELN QNHSSAWYDVATEICNKRKETVIRAILEDNIEIEGD >gi|308151755|gb|GL476267.1| GENE 48 30706 - 30921 244 71 aa, chain - ## HITS:1 COG:no KEGG:EF1428 NR:ns ## KEGG: EF1428 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 71 1 71 71 126 98.0 3e-28 MKKRKPKSLYEARILGSFILVFILGLVIKNSVPASYPLLIIGPIAVVWFMKYDDAKYLAY TKKETHSSTND >gi|308151755|gb|GL476267.1| GENE 49 30922 - 31089 149 55 aa, chain - ## HITS:1 COG:no KEGG:EF1427 NR:ns ## KEGG: EF1427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 63 100.0 3e-09 MKNKELAIKTMMTLSVGILFFVFILCLIKSQFLTAIILALFLMFIRVLWVNRSGK >gi|308151755|gb|GL476267.1| GENE 50 31101 - 31331 246 76 aa, chain - ## HITS:1 COG:no KEGG:EF1426 NR:ns ## KEGG: EF1426 # Name: not_defined # Def: VrlI protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 126 100.0 2e-28 MALEVIDFKSKKDRKVNSKKIPPLKAIEVAKRKNVSAATVTRWMKREIDPLPAKRNGGLV RIEVDDLEEWYERNFI >gi|308151755|gb|GL476267.1| GENE 51 31312 - 31872 317 186 aa, chain - ## HITS:1 COG:no KEGG:EF1425 NR:ns ## KEGG: EF1425 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 186 1 186 186 339 98.0 4e-92 MSMSVILRKSLIEVLNKKNEKKKDVAREISTSQQSLSDWTSQNNVKPVTIENALRLSDHF RDSTFTMEVIHQFFGMFKTCDGDVYRKDPSSLDRLQKIESNERKALKHDVERIILKNPEY LSEQDISKIVAYANEYLDEVIVEITLLSSLCDLASIDIRYLSEQRFPYWEQLGYMRKENT NGTRSY >gi|308151755|gb|GL476267.1| GENE 52 31935 - 32081 221 48 aa, chain - ## HITS:1 COG:no KEGG:EF1424 NR:ns ## KEGG: EF1424 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 48 65 97.0 9e-10 MPEKQKMIDFILEIMPNVKLIVELATDDQLIRLYEQAQDKLNYQLDLI >gi|308151755|gb|GL476267.1| GENE 53 32127 - 32312 103 61 aa, chain - ## HITS:1 COG:lin1235 KEGG:ns NR:ns ## COG: lin1235 COG1396 # Protein_GI_number: 16800304 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 3 60 2 59 61 71 63.0 3e-13 MRDWLLKLRIKNKMTQEEVAVKAEISRTTYASIEQGRRRPSVESAMRIASILGFDWTLFF E >gi|308151755|gb|GL476267.1| GENE 54 32478 - 32801 425 107 aa, chain + ## HITS:1 COG:lin1234 KEGG:ns NR:ns ## COG: lin1234 COG1396 # Protein_GI_number: 16800303 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 83 1 81 142 84 55.0 5e-17 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL HGRESFEDTSLSKKQLTVAAHIDDDVSDTEMNEILSFIDYIKKRDHK >gi|308151755|gb|GL476267.1| GENE 55 32822 - 33286 455 154 aa, chain + ## HITS:1 COG:no KEGG:EF1421 NR:ns ## KEGG: EF1421 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 154 310 96.0 1e-83 MVTSEELMARFSDLTYKFESNMPEKQKGLYINNVVYLNPQQHPRELTSTVAEEIGHHLTS VGDIIDQDTNEKRKQEQKARDIGATMVVTPQDLIDCYHERFTYVWECADFLGITKQALER ALSAYSKQFPEGLVYGDYKLFFKPNGTLGIVKWF >gi|308151755|gb|GL476267.1| GENE 56 33304 - 34059 565 251 aa, chain + ## HITS:1 COG:no KEGG:EF1420 NR:ns ## KEGG: EF1420 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 250 250 382 92.0 1e-105 MKNSILFMLGISLFSMTACSDGDKKEVKTTVSSSTVISVTKESSGNTKKNESNSITKTSN VITSSTSVEKPQVEVSLADFIGGWGIPQSGNLFFINEDGTYSNGQVDHSSLIDLKFNILA DGRKSMSSNLGTLIKESDGTLTDGELVFQPLEFSNKEDFLADKQKEYKNSPETNAPENEV EITDTTEDITNGNISTDINTLTGFLNVYGMTPAAYKVTVEGMSEEEALRNTPKEMKTSAE IQLGISKYGIQ >gi|308151755|gb|GL476267.1| GENE 57 34118 - 34711 345 197 aa, chain + ## HITS:1 COG:no KEGG:EF1419 NR:ns ## KEGG: EF1419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 345 94.0 9e-94 MSAFLGLSSLLGLFVTSVYFVYCIFKKRNNLSYFVWIYMILIGLFFTALELFIPGTIFLF ISLYKILKDPKAKKFLHEQEIKRTEKIIEKQNPIQKFTESNSNETEQNQKVAPTYSNDYY HSDKKAGLFHLGVYCPYCKSLNVQYMHNNRKGFSVGKAAGGALLTGGIGTLAGFAGKKGK KNTWRCNNCGCTFKSAK >gi|308151755|gb|GL476267.1| GENE 58 34867 - 35148 246 93 aa, chain + ## HITS:1 COG:no KEGG:EF1418 NR:ns ## KEGG: EF1418 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 93 1 93 93 142 96.0 5e-33 MMTPYELRERLKRDVPEVTIYPILTNPYYSEEKYQDVLKDQLKLKKDIETDNMVTLPLFS WEEKELKMDQFYEKGWYKPKLYTLPKSMFRSED >gi|308151755|gb|GL476267.1| GENE 59 35148 - 36374 934 408 aa, chain + ## HITS:1 COG:L48477 KEGG:ns NR:ns ## COG: L48477 COG0582 # Protein_GI_number: 15672029 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 3 397 2 389 394 98 26.0 3e-20 MASIKSYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEE FVKENSQKMTISKFMNIWINEYKNNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQ KFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVK EKTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFR DNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLP MTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAG VPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQHKKSGN >gi|308151755|gb|GL476267.1| GENE 60 36485 - 37834 1873 449 aa, chain - ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 684 74.0 0 MSHIQLDYSKLAPFVADHELEYMQTQVTAVDKALREGTGAGNDFTGWIDLPENYDKEEFA RIKKAAAKIQSDSEVLVVIGIGGSYLGARAAIEFLTHSFNNLLSKEERKAPQIFFAGNSI SSTYLADLINVIGDRDFSVNVISKSGTTTEPAIAFRVFKELLINKYGKEEANKRIYATTD RAKGAVKVEADAEGWETFVIPDDVGGRFTVLTPVGLLPIAVSGADIDRLMEGANDARKEY GATSDLKENQAYQYAALRNILYRKGKTTEMLINYEPGMHYFSEWWKQLYGESEGKDGKGI FPAAADFSTDLHSMGQYVQEGMRNLFETVVKIENPRHSISIPEQNEDLDGLGYLQGKEID FVNTKAFEGTLLAHTDGGVPNMIVKVPTMDAYSLGYVMYFFEIAVGISGYLNGVNPFDQP GVEAYKRNMFALLGKPGFEELAKDLNARL >gi|308151755|gb|GL476267.1| GENE 61 38016 - 39362 1571 448 aa, chain - ## HITS:1 COG:lin0569 KEGG:ns NR:ns ## COG: lin0569 COG0334 # Protein_GI_number: 16799644 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Listeria innocua # 3 448 14 458 458 555 65.0 1e-158 MDAEQYVKNIQEKIHQLDQGQTEYLQAVDEFLPTVEGFLEKNPQYIEANVLGVLIEPERI FQFRVPWQDDQGNWHVNRGYRVQYNSAIGPYKGGLRFHPSVNLSVMKFLAFEQIFKNSLT GLPIGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQKHIGPSTDVPAGDIGVGAREIGYLF GMYKRLRNYDAGVLTGKPLGYWGSQARTEATGYGTVYFVKHLLADKNDTFEGKKVAVSGS GNVAIYAMEKAIELGATVITCSDSSGFVYDPEGIDVALVKELKEKNRERISKYVETRKGA TYYDKESVWDFETAYDIALPCATQNEINKKQAAILVKNGVKVVAEGANMPCTLEAVAVFA KSAVIYCPGKAANAGGVAVSALEMSQNAERLAWSFEKVDGMLDQIMQNIYETCRDTANEY QARDNFVLGANIAGFEKVAAAMLSQGLV >gi|308151755|gb|GL476267.1| GENE 62 39500 - 40786 1199 428 aa, chain + ## HITS:1 COG:L56208 KEGG:ns NR:ns ## COG: L56208 COG2081 # Protein_GI_number: 15672240 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Lactococcus lactis # 2 420 6 422 423 520 62.0 1e-147 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEE IISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNR INELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTYPSTGATGDGYKL AKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVNHQMDMLFT HFGISGPAALRCSSFINQELTRNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAK NAFHSLIPERLLTFYLEKLAIEEVPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVT GGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAAEIAEY TYLPIEEV >gi|308151755|gb|GL476267.1| GENE 63 40827 - 42323 1352 498 aa, chain - ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 20 497 2 478 538 277 35.0 3e-74 MRTQDSFVSEMKEEGKMKKLSIHLKEVSIHFSGKPILEIDELFVYENEKIGIIGKNGAGK STLLNLIMGKIQSDKGKVQRLNDFHYLAQVAEEITNESEKADKNCLLNQKNQKLSGGEKV QKRLATLFSEYPTGVILDEPTTHLDKEHRHLLVADLTYYYGTVLFVSHDRFFLNQLAEKI WEVSDGHVKEYLGNYDAYCRQKELEQQTRYNVYHQYQKEKKKLQESYTKKQAQAQKSSHV SKKQKQKQIKPSRLAGSKQKDTVQKALQKQAKAINARIDRLPDVAQAKQKRKIIFPTNNQ FSLYNPYPIRIENLTFAYENRTILNQVNVQIPLNEKIALCGKNGAGKSTFLQQIKARHPA IYFSPKVRLGTYHQLDYRLKNDEPLLTYLLKRTNYSEKIVRSLLYRLGFQQENLQTKISS LSGGEAIKITLAQLFIEPNNIILLDEPTNFLDLDTIQALEEFISAYQGTVIFTSHDETFV EKVATRTIYLENGKIIDK >gi|308151755|gb|GL476267.1| GENE 64 42611 - 43045 505 144 aa, chain + ## HITS:1 COG:no KEGG:EF1412 NR:ns ## KEGG: EF1412 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 240 99.0 1e-62 MKITLTRKTSAWGALRYFTFYKNGVHQGKLFTNVPIEIEADPGDVLTFYEGWFQFYRRIE VTEDTKEITIINSKKLQHVFYTCVVLFLILTLLFLSAQKLSTFIIAEILIYSGIQWLFRQ QTYHFTVKKKTEPFASYSKKSIAH >gi|308151755|gb|GL476267.1| GENE 65 43071 - 44465 1674 464 aa, chain - ## HITS:1 COG:lin0540 KEGG:ns NR:ns ## COG: lin0540 COG1486 # Protein_GI_number: 16799615 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 1 440 1 439 440 629 67.0 1e-180 MTRGALKIATIGGGSSYTPELIEGYIKRKDELPIKEIWLVDIEAGKEKLEIVGAMAKRMI KAAGLDWEVHLTLDREAALKGADFVSTQFRVGLLDARIKDERIPLSHGVLGQETNGAGGM FKAFRTIPVILAIIDDMKRLCPDAWLVNFTNPAGMVTEAAIKHGGWKKTVGLCNVPIGHR KQAAEMLGIPEEDLFFKFAGINHFHWHRVWDKEGQERTQELIDLIYGPKQEQESHLKNIF DAPFHYEQLKDLGMLPCGYHRYYYIEDEMLKHSIEEYERGETRAQVVKETEGRLFELYKD PKLDYKPKELEERGGTHYSDAACEMIASIYNDKRTDMVVSTENNGTITDLPYDCVVEVSG PVTAHGHEPYNWGAFPPAARGIIQNMKAMEETVIRAAINGDYGAALHAFTINPLVPGGVM AKTLLDELLIAHKAHLPNFADAINKIEETQPETVTYVAELMKSN >gi|308151755|gb|GL476267.1| GENE 66 44607 - 45605 1181 332 aa, chain + ## HITS:1 COG:lin0539 KEGG:ns NR:ns ## COG: lin0539 COG1609 # Protein_GI_number: 16799614 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 321 1 321 322 266 42.0 5e-71 MTSIIDVAKVAGVSKSTVSRLISGKGYVSADSQEKILKAMKELNYTPNYVARNLRAGATK TIGFLAPSYLGSLGIFLNRFISIAKKYNYSVTLFFTDGDQQKEIDALNQLKYKQLDGLFL LTRTNEWSVIEPYSAYGPLATWHRIDSPNIYSSYIDHYSGYYRSLEYLQQQGYQKIGHVL GNPENLNTHARKRAMKDFYENTQAPWQAEWLINDQYTNHSGRKIAHYWQQLTDKPEALAF YNDHVAAEFISELENLNYAVPRDVAVIGFDNSYVSELMHITTVDYAIQYQAENSFIYLYN QLNQTNIPEKKLTVRLVERRTVPKKDPADQSL >gi|308151755|gb|GL476267.1| GENE 67 45641 - 46903 1236 420 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 397 399 202 32.0 9e-52 MSKFWIIATDVYKKNVKSLSFLIMILAPFLLVGIVYLAGSLASGFSGDTTIGLVSENQAL VKELTKNKTEDFSFKAVSSEKNAQEQLKDEKIDAYLLLDTTDNQISGQLYSERSLGNATE MLIPQMLNQLQTMANANRLNLTAEQVAMLNQQATFKKAKISFDENGKIKTGEDNTGIQMA LAMGITILLFVFISSYSSIIAQEIASEKGTRIMEVILSSTKAQTHFYGKLTGVILVALTQ IFIYGVAFVLGYSQLKNLDFMKSLLSGISPQSIFSSTFIFTLGFFIIGILVFAVLAALCG SLVSKPEDTAKAVQPIMYIGLIGYMIGITFGTNDPQNIVVKVTSFIPLISSYIMPVRLAT ETASTMEAIVSLVILAVFGIILTIFSARLYKSNVLVYSEGGMIQSLKQSISILKNEQKHK >gi|308151755|gb|GL476267.1| GENE 68 46896 - 47795 276 299 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 2 290 5 298 311 110 26 3e-23 MLEVKELVKTFGDFKAVDHVSFTIPDGKILGLIGQNGAGKTTTFRLILNFLTQDSGSVLW NGQPLNEKEYNIIGYLPEERGLYPKITIEDQLIYFASLRGKTKKEIEPKIDFWMEKFQVK GKKTDKVKSLSKGNQQKVQLIATLIHEPKLIILDEPFSGLDPVNAELLKDGIIELKNQGS CVIFSSHNMDNVEKICDHLVMLKNGRMVLDGQVHEIRQQFGRTKLFLESPLSVEEVAATA GVKEAHLRQDGVLEATLENAEVGKVLFDKATANGYIPMFNQQPPTLEEIFKMKVGGQDE >gi|308151755|gb|GL476267.1| GENE 69 47900 - 48157 234 85 aa, chain - ## HITS:1 COG:no KEGG:EF1407 NR:ns ## KEGG: EF1407 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 156 95.0 2e-37 MKILTPVYQIKFKKVSNQLLIDERLMNELGTWLNRTGRIWACQSSKSAKEFKNTFYESTG LTANEVHISAETDGLFRLAENKASD >gi|308151755|gb|GL476267.1| GENE 70 48309 - 50105 1956 598 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 2 588 3 590 603 855 71.0 0 MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDTKTERLVSEI DDFEYIVTESNIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITNEKYPRLMITRKVLK DKALYFGPYPDVNAANETKKLLDRLFPLRKCNPSQKTPCLYYHLGQCLCPYAFDVDPQVY KDMVEEIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNV DLIDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEH FVPKEVLIPDDIDKESVEALLATKVLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRKQE RTIGAVEKLGNAMNIPAPIRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIKTVQ GPDDYASMREVIYRRYSRVLKEGLPFPDLILIDGGKGQVDVAKDVLANQLGVDIPVAGLA KNDKHKTSELLFGPNLEVVPLERNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFASKLD NIEGLGPKRKKNLLKEFKSLKNITAASVEELRKAGLPETVAKNVYRHLHQETTSEIEK >gi|308151755|gb|GL476267.1| GENE 71 50270 - 50584 541 104 aa, chain - ## HITS:1 COG:SPy1835 KEGG:ns NR:ns ## COG: SPy1835 COG0526 # Protein_GI_number: 15675662 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 104 149 74.0 1e-36 MTQAITDKDFATETDEGLVLIDFWATWCGPCRMQAPILEQLSEEYDEDEVKIVKMDVDEN PATPASFGIMSIPTLLLKKDGEVVEKAVGVHTKDQLQAMIAKHL >gi|308151755|gb|GL476267.1| GENE 72 50682 - 53048 2816 788 aa, chain - ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 727 53.0 0 MNQLILSTLGFDKVKQQLLQFIVTAQGTNEVSELLPIADENKIQAWLNETQDGLKVHRLR GGIPIPKLENIQPHMKRIEIGADLNGIELAQVGRVLSTTSELTRFFDELSENEVDFERLY MWREQLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKN ARYLSDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQ IAERNEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEISQANH VVFKQARHPLLDPEKAVANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPI PVEEESKMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGT DPQEGAALAIAILDSLGAKGAYVMATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRL LIGVPGRSNAFEISKRLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEAR HYVDESAALHKELKEAYQVFFEEREKELQKARKEANKIIAEAEENAETIISDIRKMQLES GQQGGVKEHQLIDAKTQLSQLHHEETKLAKNKVLKKAKEQKKLKAGDEVIVNTYGQRGTL LKDNGKGQWQVQLGILKMNVSEEDMTPVAPQKEAKPRVTTVRSAESSHVGTQLDLRGKRY EEALAEVDQYIDAAILAGYPQVTIVHGKGTGALRTGITEFLKNHRSVKSYEFAPQNQGGN GATVVKFQ >gi|308151755|gb|GL476267.1| GENE 73 53159 - 53707 447 182 aa, chain - ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 177 1 175 179 105 33.0 5e-23 MLTILILLLLAFGFYTGAKRGLILQVLYSVGYLISYFVARTYYKEVASHLELYIPYPSVT PTSKLVFFNQEISLDLDKAFYSAVAFLLLLFAGWLVVRFLAIFLHGLTFIPVLKQVNGLL GGVLSVLVLYVGLFLVLATASMIPSDIVQNQFRSSGLARGIVKNTPILTKQAYELWVEPI TK >gi|308151755|gb|GL476267.1| GENE 74 53727 - 54170 551 147 aa, chain - ## HITS:1 COG:no KEGG:EF1402 NR:ns ## KEGG: EF1402 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 190 100.0 1e-47 MASNEKTRYKAIIADHTYTIIGQESKQHMDLVTKIVNEQLAEIKHLSPQTDTEQASVLLA INAISDQLKKQEYALKLEKQVADLKQKTIRLAELENRVRRMEIIEEEARDVLKKNGQEDV EIHNHVEAQQILNENRKQQIQNKGVSE >gi|308151755|gb|GL476267.1| GENE 75 54439 - 56541 2655 700 aa, chain - ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 1 694 4 700 702 689 52.0 0 MQKSYKLEGLDCASCADKIEKSVQKIHGVEKARVDFMAEKMTLEVESGQDLEVENEARAV IGKLEPDVKVISLKDVKEEEGRNPNKNRLIRIIIAFVLFLALIIIKPSNNWVALASYLVV YVLIGGDIVKRAVTNIFRGEVFDENFLMSVATIGAFFIGEYPEAVAVMLFYQVGEWFQSA AVDQSRKSIAKLMDIRPDSANLLVNGQIKAVAPDTIEIGQQILVKPGEKVPLDGQIIDGS SMVDTSALTGESVPRTVKVGDEILGGFINKNGALTINVTKKFGDSTVSKILDLVENASSK KAPAENFISKFARYYTPVVVVLAILLAVIPPFIFPDTSINEWVYRALTFLVISCPCALVI SVPLSFFGGIGGASKLGVLIKGSNYLEILANTETIVFDKTGTLTKGNFVVQNITSVVLPE EELLRLTATAEQLSTHPIAISIKESYGKETVPATAIEEVAGHGIKATIEGKTVLVGNAKL MKQFGIEAPEVKEAGTLIFVAIDNQFAGYLVIADQLKPDAISAIKELKAEGVKQTVMLTG DNQQVAEAIAKEVGVDKVYAELLPDGKVDRLEELLKASSPKNKVAFVGDGMNDAPVLARA DVGIAMGGLGSDAAIEAADVVIMNDEPSRIASAIKLSRKTLRIVKQNIIFAIAVKIIVLV LGALGLASMQAAVFADVGVTIIAVLNAMRCLRVEKMKDNN >gi|308151755|gb|GL476267.1| GENE 76 56927 - 57667 266 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 29 218 32 231 245 107 34 4e-22 MRLIVDIQKELKSHTLQIQFETKTQTTGILGASGCGKSMLLKCIAGVETADKGQIVLNDQ VLFDAEQKINLSPQQRKIGLLFQQYALFPHLSVVENLTCVTKDLQLVTQLLASFHLTKVQ EQYPSQLSGGQRQRVAFARMLAAQPAYLLLDEPFSALDAPLKEELQIELQQRLSNLNQHA LIVSHSLDELYKLCQSLVIITKSKTLFGATNQLFNQPQTIEAAKLTGCKNIWPVKRIDAH RVQVIG >gi|308151755|gb|GL476267.1| GENE 77 57664 - 58335 634 223 aa, chain - ## HITS:1 COG:alr2433_1 KEGG:ns NR:ns ## COG: alr2433_1 COG4149 # Protein_GI_number: 17229925 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 216 3 216 223 164 45.0 8e-41 MDVRPILLSFQTAIIAILFTFVLGTGVAYIVFRLKNRKLKILLNSLFTLPLVLPPTVFGF FLLTIFGVQQPVGQFLLDFFAIQVVFSWPATVIAAVAVSFPLMYRSALTAFEQMDSELLA VAQTLGFSESRYFRKIALPLSMNGLLAGGVLAFARGLGEFGATTMLAGNIAGKTRTLPLA IYSAVASGDWRLANQYVVIMLLLCLIILFFTEFFSQRAWRRSE >gi|308151755|gb|GL476267.1| GENE 78 58344 - 59144 826 266 aa, chain - ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 4 262 3 257 260 159 38.0 4e-39 MSKQKKAVFLLSLFSLVALIAACTNQPQKETVSTKKEEITLAAAASLESVMEKKIIPAFE KEHPDIQVTGTYDSSGKLQMQIEKGLKADVFFSASTKQMNALVAEKLINKKSVVPLLENQ LVLIVPNQDQAKWHDFSDLKKAQMIAIGDPASVPAGQYAEEGLKALGAWSYVEKHASFGT NVTEVLEWVANASAEAGLVYATDAATNSKVAIVAAMPEAALKKPIIYPVGKVAASKKQKS ADAFLNFLQSQQCRKYFENIGFKLTK >gi|308151755|gb|GL476267.1| GENE 79 59163 - 60134 1098 323 aa, chain - ## HITS:1 COG:SMc00519_1 KEGG:ns NR:ns ## COG: SMc00519_1 COG0303 # Protein_GI_number: 15965501 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Sinorhizobium meliloti # 8 323 10 320 340 101 27.0 2e-21 MKTIRTEEAVGLPLSHDITRIDYGKTKEVCFKKGHIVVQEDIPILLSLGKKHLFVSLDPA EIHEEEAATFLYNLLTDDSCQPSEVHEGKIVAKASTRGLLKVNREKLIALNEIEGLALST KVTNIEVQKDEKVAAFRVIPLTISKSQLEKARQLSTSEPLISVKPFKKIRVGIVTTGSEV YTGLVEDAFYPVLKAKFSAYPLVTIVKQEIVDDQPQKITVAIKKMLAQGVDLIVCTGGMS VDPDDLTPLAIKQTGAEIVTHGTPVLPGSMFLLAYKGEQTIIGLPGGVLFSEKTVFDLLL PRLMAKEVIKKSEIIDLSYGGYL >gi|308151755|gb|GL476267.1| GENE 80 60138 - 60620 240 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 4 150 2 169 194 97 39 4e-19 MFKVGIVTLSDRCFQGLAVDQSGPLIREQLPVLYQVTKQTILPDEENQLVELLQEWSKTC DLILTTGGTGLSERDRTPEATLRVAERIIPGISEGLRQLSLEKTPFAMLSRGVSVQRGRT LIVNLPGSPKSVTEHLHFLLPVLPHALDLITNKKIIHDEE >gi|308151755|gb|GL476267.1| GENE 81 60613 - 61047 385 144 aa, chain - ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 144 3 143 145 130 46.0 7e-31 MKTGEIIAINISPRRGTQKKEIPEVNLIKGFGLENDAHGGNWHRQVSLLSFEEITAFNEK GARVGNGAFGENIIVSGIDLRQLPVGTKMKIGDSELVVTQIGKECHKHCQIYARVGDCIM PREGIFAVVVTEGHIKKGDQLDVV >gi|308151755|gb|GL476267.1| GENE 82 61050 - 62015 750 321 aa, chain - ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 321 4 333 333 248 39.0 9e-66 MKDAFNREIDYVRLSLTDRCDLRCTYCMPATGLCFLKKEQLLTDDEIIFLLRILAKEGIK KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNGMKLAREAQGLKEAGLDGINISLD TLDPEEFREITRVGQLRNVLAGLEQAIDVGLPNIKINTVARKELSEATIVELAEIAKKET VHLRFIEMMPIGLGKEHPGKQQEEVEAILTKHYGTLQPYKKPLGNGPASYYALKDFKGKI GFISALGHCFCETCNRIRITADGHLKTCLHSADGYSLKEALAMEQTAELLGIIKSGIACK PEKHLFLEQQGEQRFMSQIGG >gi|308151755|gb|GL476267.1| GENE 83 62021 - 62503 370 160 aa, chain - ## HITS:1 COG:BS_ydiG KEGG:ns NR:ns ## COG: BS_ydiG COG0315 # Protein_GI_number: 16077663 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Bacillus subtilis # 2 150 8 159 170 145 51.0 4e-35 MNTQGEVHMVDISEKNDTQRTALAYGEIHMLEATAEAIQTQMIKKGEVLQVARVAGITAA KRTFEWIPLCHLVALTKCEIQFDWRNQTCLEVRCFTKTVGSTGVEMEALTGVQAALLTIY DMCKAIDRGMTMTNIGLLEKNGGRSGHFIRSSIKSKESDE >gi|308151755|gb|GL476267.1| GENE 84 62794 - 63996 955 400 aa, chain - ## HITS:1 COG:BH3021 KEGG:ns NR:ns ## COG: BH3021 COG0303 # Protein_GI_number: 15615583 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Bacillus halodurans # 2 384 8 396 423 186 32.0 5e-47 MIELEEAREKMTQHMKSQCETEEVALLDSLGRISGETIFAETAIPHFPRAGMDGYAVRAV ETRGATAESPSCLKVVGSLVAGDSMFYCNQTNNCAIKITTGAFIPTDFDAVVPQEWTDFG QDHVKIFRSVTAGQNYAEIGEDIAFQQKILAKHQQINSRMIGLLAMQGIDKVVVLKRMKV GILATGSELVSLEEPLSVGKIYNSNLYMLAAFVKASGNEVIHLDHCSDDPEELAKRLIEI SPKLDLLITCGGVSVGEKDNLPLAIKRIGGTELFHFVNMKPGTPVMGSQFQETLILSVSG NPFAAMVNLHLFYWTLLATFFNCVELNLKERTVILAHELAPSRLRRFYRAKEIDGTVNLV TKSHLSSNLSNTLETNCLLEQPAGVLLKKGALVKVYYWQT >gi|308151755|gb|GL476267.1| GENE 85 64014 - 66734 2583 906 aa, chain - ## HITS:1 COG:AGl347 KEGG:ns NR:ns ## COG: AGl347 COG3383 # Protein_GI_number: 15890285 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 905 30 946 973 744 42.0 0 MKTKLHTQTVTLSIDNQEVTVSKGTTILEAAKGLGVEIPTLCHLKELAPDGSCRMCVVEV EGGRRGGLTTACTAHCQEDMVVSTHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQ QYALDYGIDATSFTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIA NRGFETKMMPSYGQAFDQSICESCGNCVSSCPTGALTAKDTKEYRKWETQKIPTTCPHCG TGCQMNLLVKNNRLVGVEPLDGPANKNLLCVKGKFASYKFVGSGDRLTEPLIKRNGIFEP ASWEEALTLVSSKFNEIKAENGPDALAGFSCSRATNEDNYVFQKMVRAAFGTNNVDNCAR VCHSASVHGLAQTLGSGAMTNPIADITEDVDMILLVGSNPEEAHPVIGAQIRQAIQRGTQ VVVVDPRKINLVKDSALHLQVQAGTNVAFANGMMHVILKEGLADRHFIEERTEGFSDLEK MVADYTPEKVAEICHIHPEDLIQAARMYAKAEKAPIIYCLGVTEHSTGTEGVMSMSNLAM LVGKVGKPGCGVNPLRGQNNVQGACDMGCMPYDFPGYQKVNNPEVIDKFEKAWHVPLNRN TGLTSTKVLPAATAGNVKGLYIFGEDPIVTDPDTGHVRQALESLDFLVVQELFMTETAAY ADVVLPGISYAEKDGTFTNTERRVQRVRKAVEPRGQAREDYEIFCEVMTRMGYPCAYESA KEIMKEISAVTPSFGGINYERLEKESLQWPCRSLTDPGTPIMHVGSFARGKGLFKAIPYK QAQELPDEEYPYLMSTGRMLYHYNTRAMTGRTEGINQIANHSYIEINAVDAQALGIQEGD KVEVHSRRGKIETYAAVGNRVFPQEVFMTFHFPDGNVNEITNAVFDDIATIPEYKVCAVA IKPVNK >gi|308151755|gb|GL476267.1| GENE 86 66737 - 68035 1115 432 aa, chain - ## HITS:1 COG:TM0228 KEGG:ns NR:ns ## COG: TM0228 COG1894 # Protein_GI_number: 15643000 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Thermotoga maritima # 8 417 112 516 545 354 44.0 2e-97 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA AYPLGKKWRHLYHAKGTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAK AGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSA LLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGG GTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVA TLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTT RILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFETTA ETEIYATSKGGW >gi|308151755|gb|GL476267.1| GENE 87 68047 - 68535 647 162 aa, chain - ## HITS:1 COG:TM0012 KEGG:ns NR:ns ## COG: TM0012 COG1905 # Protein_GI_number: 15642787 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Thermotoga maritima # 8 157 25 175 176 84 28.0 9e-17 MCALSLIEKEAIILENDADPQRILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYE IVSFYAILKTEPQAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSI PCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQNDCYEGL >gi|308151755|gb|GL476267.1| GENE 88 68523 - 69104 432 193 aa, chain - ## HITS:1 COG:no KEGG:EF1387 NR:ns ## KEGG: EF1387 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 193 1 193 193 352 97.0 7e-96 MAIEVPNMIQIGSTGRNSGKTTLAEALIKQYQEIYPIYGLKIITISGQRGVCQRGTKGCG ICTSITAGYELVEEKETIGNKDTMKLLAAGCQKVFLLKVFQENLAEAIQQFLKAVPAQAL IICESNSLRNVVQPGLFLMMNNQNRQKESAKKVIDKADFCLLSAEIPKELRIYYQGEQLQ VSLKGGNKKECVH >gi|308151755|gb|GL476267.1| GENE 89 69094 - 69654 393 186 aa, chain - ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 179 89 268 270 158 51.0 7e-39 MVMTLGVLQKKVRVGALCYNWLVVLLTNCLGGFLVAYLFGHIVGLTEGAFLDKTVAVAQA KIADPPIVAFVSGIGCNIFVCLAVYLGALAKSYLGKMFGLWFPVMVFVVCGFQHVVANAF IIPAAIFSQSTTISWWDYLQNTLWVFLGNAVGGSLFMAVPLIFMTKPATVKPRVEKTIQT EELYGN >gi|308151755|gb|GL476267.1| GENE 90 69703 - 69918 279 71 aa, chain - ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 71 1 71 270 59 42.0 2e-09 MDFFSSEEIVASLGDKAKMKGELSFVRLCILGIMAGFCIALGYLAFIRITGTAPTEWGSF NNFLGGALFPV >gi|308151755|gb|GL476267.1| GENE 91 69934 - 70509 495 191 aa, chain - ## HITS:1 COG:BH3017 KEGG:ns NR:ns ## COG: BH3017 COG0746 # Protein_GI_number: 15615579 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Bacillus halodurans # 11 189 9 197 198 81 30.0 1e-15 MAKIIADCTVVLLCGGKSSRMGFDKALLKIQGQYVILQTAEKLMELFEEVILVTNDSQKF PKAFRKCTIIQDMYLGKGPLGGIVTAMNYTQKAEVFVIACDIPTFSPKLVYQLASKRGQN QVTIFDFEGRQEPLFGFYRCSCLPTFQKQLAQNNYQVRQEFERLSVKTVQLSKENQLKNV NRKEELSQWYR >gi|308151755|gb|GL476267.1| GENE 92 70651 - 71679 844 342 aa, chain - ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 332 14 341 357 65 21.0 2e-10 MKGKVKIGLNMLLMIIVLGVIFYVMDNSLSDIFAQLMETSWLVLIAVIFFGVVYQFAEGR SIKEIARYFNKDFTTVDGFFTSCYVAFYRIISFGTGTLLSEIYFYKKKGIPVSKSVGITA LHMIMYKAAVIFLAIIGLIIQFSLFYENAPKMIPFILAGVILTLVIIAALLILSSSLKLQ VLLVKFANRWFKRPKLRDWVDNCNLQIYSLRAAVQTITQDRSALLRIFSWNVFKLLFWYI IPYIVLVENHPNIDLLLVMSFTSFAVILSGVIPTPAGIGPFEFVYLLLFKPLVGNVDAVA SVLLYRFGSFVLPFLIGLVYVAIEKRKSLRIEIEEIKRQTDE >gi|308151755|gb|GL476267.1| GENE 93 71699 - 71965 267 88 aa, chain - ## HITS:1 COG:MA2252 KEGG:ns NR:ns ## COG: MA2252 COG3326 # Protein_GI_number: 20091091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 68 1 70 90 58 45.0 3e-09 MLQWIVIIYLLVINLVLFSMMGYDKKQAKRGNWRIPERRLLTIGLVGGGLGGLMGQKKFH HKTQKPVFALCYSIGVIAMISCIYLTFK >gi|308151755|gb|GL476267.1| GENE 94 72044 - 72139 75 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLQQESKLSIARFLTFLLSASFILHLIQQF >gi|308151755|gb|GL476267.1| GENE 95 72111 - 73340 1932 409 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 2 407 3 408 413 538 66.0 1e-153 MYENLLPRFLRYVKTETRSDATSTTTPSTQTQVAFAQTLKKELEELGMSDVIYNETNGFV IATLPSNVEKDVRSIGFIAHMDTADFNAVNVSPQIVENYDGESTIPLDKEGKFTLNTKDF PNLKNYRGETLITTDGTTLLGADDKSGIAEIMTAMEYLINHPEIKHGTIRVAFGPDEEIG VGADKFDVAQFNVDFAYTMDGGPVGELQFETFNAAQAEITIQGKNVHPGTAKNTMINALQ LGIDFHNALPADEVPEKTEGEEGFYHLAAFAGTPEEATMTYIIRDHNREIFEARKAKIKE IQQTLNAPFDEERIKVDLFDQYYNMREVIEKDMSIVEIAKQAMEELSIQPIIEPVRGGTD GSKISYLGIPTPNIFAGGENMHGRFEFVSLQAMEKATNVIIKIAELNAK >gi|308151755|gb|GL476267.1| GENE 96 73370 - 74488 1359 372 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 130 6 128 265 162 59.0 1e-39 MAVNGKTLIRRFNDYCPEWLAETGDPVGLHIGTLDKPIENVMVTLDVRPEVVAEAIEKQV DLIIAKHPPIFRPVKRLITDNFQEKMYADLLKHDIAVYAAHTNMDIIDNGLNDWFCELLG IKQTTFLTKTHTVPYKKLAVFVPIDEAPQMREALGLAGAGSQGDYSKTSYSLIGTGRFTP TQGANPTIGEIGQESVVQEAKIEVIFPETKQEQVLAAMLQAHLYEEPAYDVYTIENQSKE FGLGRVGVLDKPVRFSDFVQQVKEAFQLDGLRVIAKDDTKMIQRVAICGGSGEKFYHDAL RKQADVYITGDVYYHTAHDMIAEDLPVIDPGHYIEALCKPKLVELMNQWKQENEWAVSIF ESEANTNPFRFK >gi|308151755|gb|GL476267.1| GENE 97 74472 - 75188 841 238 aa, chain - ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 232 1 233 234 199 48.0 3e-51 MNENQLSKRLATVGDLIPRGSRLADIGSDHAYLPVALMLENKLSFAVAGEVVEGPYQSAK TQVSKSNLTDKIIVRLANGLDAIEPEDQIDVISICGMGGTLIRDILEAGRKKNRLTGKER LVLQPNIGEPTLRRWLMANEYSIIDETIVEENRKLYEIIVAEKTEQSVSYTDQELLFGPV LIKKQGPVFTKKWQRELKQRKTVLAQLAKASGEHIEKQAKLQQDQQLIEEVLTNGCER >gi|308151755|gb|GL476267.1| GENE 98 75391 - 78033 3503 880 aa, chain - ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 1133 65.0 0 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN PRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVEDNFWDIGAGPSGPDTEIFYDRGEEF LDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQ DAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNE GRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEE ERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLKVD HAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVESKFVGYTELTHDSELFVIIQGD ALVNEASAGTAELIFAETPFYAEMGGQIADRGYVKNTAGDVVANVVDVKKAPNGQFLHKV EVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQAGSLVAPGHLRF DFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVV NIGDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKE IATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIA AQVNVKDMNQLRQLADQWKQKELSDVLVLATAQDEKVSLLAAMTKDMNGKGLKAGDLIKA IAPKVGGGGGGRPDMAQAGGKNPAGIADALAEVENWLANA >gi|308151755|gb|GL476267.1| GENE 99 78382 - 79062 601 226 aa, chain - ## HITS:1 COG:no KEGG:EF1378 NR:ns ## KEGG: EF1378 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 388 97.0 1e-106 MRRILVLTKNILVEQTFQQQLQYLNYEVFCTNCFEETVEHELTFFNYFDAIVLSETLSQN DCLRLLGSLSSLEKPIYRRSQSMCNKREAEIWQERGIIRWLGLKDSLEEIREKIDTVDQS FAEVTAELLDDQVKKIRFTKNEQRFLKILYQHAHEGLDRDQICRLLWQKEPDASTKSQLS FVCKRVKQKFSDAGMNEEIITTSWGKGYQINEKILPYLEQTLFETA >gi|308151755|gb|GL476267.1| GENE 100 79611 - 80960 1492 449 aa, chain - ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 4 447 3 445 446 554 62.0 1e-157 MPSFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPL MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTI GHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVAT DLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQ LGVSFKPKEIKNGEIVETYDRNRRTKREKSREELDPTLIGLVKKKKKKIKPGYKKKINWA IEDSNKKKRKIERRQKDRSARKAKKNSSN >gi|308151755|gb|GL476267.1| GENE 101 81023 - 82204 958 393 aa, chain - ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 241 1 236 354 164 42.0 2e-40 MAVYSEPIKWAIIIFPFLAFFISGALLIYEYRKYGSFVWTRAMILYSFVFYLLCAYFLVI LPLPSRAEVAQYTGPTMELRPFHFISGILNETVFSLKDPSTYLPALKQHAVLEPLFNVLL VLPFGVYLRYYFKCSFLKTVLASFLLSLFFELTQLSGLYFIYSRSYRLADVNDLINNTVG GMVGYWLTPLFTFLLPTREEIDATSYEKGQTVSLLRRFFAWGIDWLVIGFVQGLLVFGLN FIPAYKNWAINYPIFSDRMWFFIMVFAVFIVMMKLTNGQTLGKKVVRIRVVETGHEKIRL KALFVRYGYLYFVYGLISIYLANAADLLNSSNRMLQMVSLLLYLFCLILYLLFLINVLLT LIRKKRRLFYEKASHTYTVSTLEVAKTKESAGE >gi|308151755|gb|GL476267.1| GENE 102 82347 - 82658 343 103 aa, chain + ## HITS:1 COG:no KEGG:EF1375 NR:ns ## KEGG: EF1375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 157 100.0 1e-37 MLQPYFAFGVPLFLLVLYLLFALIHRQTTIHYLRFILLLISTFLMVFSFQVLQESWTINP ETLKDAAYSPQWLWIPLGIGLILTLYNAWHGLRTMIKYKTDKH >gi|308151755|gb|GL476267.1| GENE 103 82719 - 83057 425 112 aa, chain - ## HITS:1 COG:lin0389 KEGG:ns NR:ns ## COG: lin0389 COG2824 # Protein_GI_number: 16799466 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Listeria innocua # 4 111 3 110 111 174 81.0 3e-44 MTEQLPNCPECGSAYAYEDRGLFICPECGHEWSPTEEVAEEGLVVKDSNGNLLADGDSVT VIKDLKVKGASGAIKQGTKVKNIRLVEGDHNIDCKVDGFGPMKLKSEFVKKN >gi|308151755|gb|GL476267.1| GENE 104 83171 - 84124 931 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 308 1 306 311 363 59 3e-99 MDVVKEIMAAIKQYETIIIHRHQRPDPDAIGSQVGLAELLRASFPEKNIYQVGGPVEGLE FLAEMDVITDDVYRGALVIVTDTANTPRISDARFSLGDQLIKIDHHPNDEPYGDLVWVNT NASSCSEIIVDFWQQHLAELTMTDNAARLLYAGIVGDTGRFLYPSTSAHTLAVAAQLRTF NFNAADLNRELDQMPLKVAKLAGYIYQNLEIDANGAARVVLPQSILNSYDIVDSETAAIV SMPGKIEDVLSWAIFVEQPEGYYRVRLRSKGPIINTIAKKHHGGGHPLASGANARDTAEI EVIYQEIQAACQEWAQK >gi|308151755|gb|GL476267.1| GENE 105 84138 - 85457 1400 439 aa, chain - ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 438 1 437 437 488 57.0 1e-137 MATKHDQILKHIEELPIGDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQRVGTIR IERKLKKHIEKLTFGEVVRIIEGDVLGGSSGLDKVLNKFVIGAMTETAMTRYITPGSLMI VGNRQGVQKLALENGAAVLITGGFETSEEIAQLADRLGMPVLRTTYDTFTVATMINRALS DQLIKKDILLVSDIYTALEKTNYLLTTQTIADYQALSESTHHSRFPVVNKKLRLVGIVTA KDVIGKSEHLTVDKVMTKDPNVVKKMMSVASVSHQMIWDGLEVMPVVEDDLALVGIVSRQ DVMKAMQLVQRQPQIADTISDQISGEVMPVEENGKETTRFRFSVAPQMVNSVGTISFGVL SEIISNVTQRTMLMNQKRNVLIEQVNLHYLRLIQLESELDIRPRILEIGRRSAKLDIEVY LENVIVAKAIVVCQVMERT >gi|308151755|gb|GL476267.1| GENE 106 85467 - 86141 788 224 aa, chain - ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 222 1 224 226 227 52.0 2e-59 MELIGHGHSCIEIRLNDGTNLLFDPFINGNPLADVSLEDLHPDYILITHGYSDHIGDMLA IAQANKATIIAIAEVATYAQSQGVKAHGMNLGGRYVFPFGSVKFVPALHSSGYEIDGVMT YMGEASGIILEAEDKKIYHAGDTALFSDMRLFAKDKSIDVAFLPIGDNYTMGPEDALEAV SYLNPKITIPIHYNTFPVIQQNPAIFVEQVVGGKVLNPGETILV >gi|308151755|gb|GL476267.1| GENE 107 86346 - 87779 1182 477 aa, chain - ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 472 6 467 486 370 44.0 1e-102 MEKIKSYQEDSEVQKNRWWILVSVAMFTFMSTLDSSIVNIALPTISKEMSVPMNQAEWVV SIYLMVVCACLLLFGKIGDSFGKIKVYRIGTVIFTIGSLLCGFNQSLSFLLFARVVQSIG ASMTMATNSGIITEVFPLNERGRALGAVGAFVSLGAIAGPGIGGLILSNFSWSYIFWINV PVGLVTILIGEKFLPKDITKTKEKIDFSGFACIAIAIMTFFGGIFLGQESGFGSLQSYLL FIIAVIALGLFIMVERKRKSPLIKFAIFKNKIFTLSLLSAVLIFASNFFVNVVIPFYLQD ARKLSASYAGLLMMVFPLLMVVGAPLSGYLTDKIGPGILTFGGLLLLCCTSLMYMFLDMN SPIWYYVIATAIMGLGNALFQSPNNTMVMSSVEKQDLGVAGSMNSFARNLGMVIGIALST TILYRGMSEAYGERVTTYLANRPDIFIVGMRETFFVAFLLCVAAFILTILRFRKTTK >gi|308151755|gb|GL476267.1| GENE 108 87971 - 88321 376 116 aa, chain + ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 100 1 97 107 68 38.0 3e-12 MTLISRIKQLAQSKQLTLAQLERNVGISNGQIRRWDTSSPKVENLLKIADYFSVSLDYLM GRTQQTEINHQAPMKSTQKELHIHITTEELTEEEITQLEEEANRFLRFRKFEMTNS >gi|308151755|gb|GL476267.1| GENE 109 88658 - 89779 1279 373 aa, chain + ## HITS:1 COG:no KEGG:EF1368 NR:ns ## KEGG: EF1368 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 373 1 373 373 708 99.0 0 MANQKKDSLSTLFSEEVHGPFVTFLFNTHVAHQNVEKDSLVLKNFAKAAKTRFEKKFPEE KWAVFQEKIDALLADASFWRNGTASVSIILSPENTFVQRLDVPVDDQYYVDTIPYLLGLV KDKQFNYHYYLLALNRDSMKLYKVDHTTVTPVELPKDAPTDVVTALGDELTGGNLNFSTQ GSSNGSKEGVAYHSINTKDKEVEIDWVNYYQAVDTFLKDQLDNPEKLPLYLYALPENQTL FKKIAKNPYYDCSISVAASPAQATIQDIRSASEKIAAELTEKETASYNKLLDRKFLDQFT DISPAAADGKISHLFIATSLFVTENNEMSSEEYDRRKLLNTIAYQVIQNGGQVFVLDQKA APDEKSLAAILRY >gi|308151755|gb|GL476267.1| GENE 110 90077 - 90277 325 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 81.0 3e-21 METGTVKWFNSDKGFGFITAENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQA TNVTKA >gi|308151755|gb|GL476267.1| GENE 111 90433 - 90528 149 31 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307279173|ref|ZP_07560231.1| ## NR: gi|307279173|ref|ZP_07560231.1| hypothetical protein HMPREF9515_01492 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_01492 [Enterococcus faecalis TX0860] # 1 31 1 31 401 65 100.0 2e-09 MQFYGDLTFLGVYLLGLFFIPSWRKKKKEHD >gi|308151755|gb|GL476267.1| GENE 112 90529 - 91638 1028 369 aa, chain + ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 34 369 10 344 344 206 40.0 4e-53 MPWMFGWTVFMFFSYVLYLEIIRGTAFFLIPIAFFGLFALFYFKEKRRLLNGTLFNIFLV VLATYLGITAIRTNNYFLITLAIIALLAIFIALALGLYALIIFLYWNAVVVMRKEGRSLG NLLTLLLAIGLTLLLIYNFFFQSLLPTWLSLPLTIAPFILTYFAFVFYNFLTVSTLYQFN QPKYTQDYIVVLGSGLINGEIVPPLLQARINKAIQFYKAQNRATLNPPKIVMSGGQGPDE LLPESVAMKMYALTQGIPDDDILVEAHSKNTLENMRFSKETMIEDFGNANFQAIFTTNNY HLFRAGLFARMAGLKADGIGAKTAFYFLPNAFIREFIAIVVMYKRRHIIVCGLAAIGMVM LFLTGLIIQ >gi|308151755|gb|GL476267.1| GENE 113 91655 - 92707 835 350 aa, chain + ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 277 50.0 3e-74 MSLYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIP TIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYL EKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFD WFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLV PVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTF VILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKNSSAE >gi|308151755|gb|GL476267.1| GENE 114 92727 - 95138 2993 803 aa, chain - ## HITS:1 COG:L10433 KEGG:ns NR:ns ## COG: L10433 COG1257 # Protein_GI_number: 15673552 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Lactococcus lactis # 393 801 4 409 410 491 62.0 1e-138 MKTVVIIDALRTPIGKYKGSLSQVSAVDLGTHVTTQLLKRHSTISEEIDQVIFGNVLQAG NGQNPARQIAINSGLSHEIPAMTVNEVCGSGMKAVILAKQLIQLGEAEVLIAGGIENMSQ APKLQRFNYETESYDAPFSSMMYDGLTDAFSGQAMGLTAENVAEKYHVTREEQDQFSVHS QLKAAQAQAEGIFADEIAPLEVSGTLVEKDEGIRPNSSVEKLGTLKTVFKEDGTVTAGNA STINDGASALIIASQEYAEAHGLPYLAIIRDSVEVGIDPAYMGISPIKAIQKLLARNQLT TEEIDLYEINEAFAATSIVVQRELALPEEKVNIYGGGISLGHAIGATGARLLTSLSYQLN QKEKKYGVASLCIGGGLGLAMLLERPQQKKNSRFYQMSPEERLASLLNEGQISADTKKEF ENTALSSQIANHMIENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIA QGFKTVNQQRLMRGQIVFYDVADPESLIDKLQVREAEIFQQAELSYPSIVKRGGGLRDLQ YRAFDESFVSVDFLVDVKDAMGANIVNAMLEGVAELFREWFAEQKILFSILSNYATESVV TMKTAIPVSRLSKGSNGREIAKKIVLASRYASLDPYRAVTHNKGIMNGIEAVVLATGNDT RAVSASCHAFAVKEGRYQGLTSWTLDGEQLIGEISVPLALATVGGATKVLPKSQAAADLL AVTDAKELSRVVAAVGLAQNLAALRALVSEGIQKGHMALQARSLAMTVGATGKEVEAVAQ QLKRQKTMNQDRAMAILNDLRKQ >gi|308151755|gb|GL476267.1| GENE 115 95324 - 96475 1329 383 aa, chain + ## HITS:1 COG:L13187 KEGG:ns NR:ns ## COG: L13187 COG3425 # Protein_GI_number: 15673554 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Lactococcus lactis # 1 382 1 382 384 494 64.0 1e-140 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE AILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQL AKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQ DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMG KKALLAKISDQTEAEQERILARYEESTIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQ IGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTDID QTLEDELKYSISAINNTVRSYRN >gi|308151755|gb|GL476267.1| GENE 116 96548 - 97315 763 255 aa, chain - ## HITS:1 COG:no KEGG:EF1362 NR:ns ## KEGG: EF1362 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 430 97.0 1e-119 MKKHVIVGCLLIVSSMFVSACGSSSDVTTEKTSVTKQVEATGQSTSSSIDQTKYDAIITE AKKLTVEGQYKESEEKLATIPVSDLGKPHYSIVKETVEKLNNQNNEGLKRQEEVAVEKQT KSSPAPTESLKPIPDEFAKWATTYLFYYPRGDQKQAGLIIESNGAVTQTNTNGEIYTGKA EISGASGTILSYDTTSYRPTTQPATKSITPNVKITVTWNNGGGVDVYYGYVSYSQRLALT DGIAVTDGVKEVWLS >gi|308151755|gb|GL476267.1| GENE 117 97454 - 98056 929 200 aa, chain - ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 11 196 11 194 198 194 53.0 9e-50 MELTVKDIQTWLDNYSKVIEEKKDYLSELDTPIGDGDHGNNMARGMAEYKIAFDKKVPTT ITETFKVLSMALISKVGGASGPLYGTAFMNMTKATKDLETISSPEQLKEIVQQGLAGIQM RGKAEPGDKTMVDVWAPVAEVIGTEQFNEEKIEQFAEATKDWVAKKGRASYLGERAIGHI DPGAASSALLFEELVKVINQ >gi|308151755|gb|GL476267.1| GENE 118 98069 - 99052 1395 327 aa, chain - ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 327 1 315 316 382 62.0 1e-106 MKKIINEPGKIVEEMLQGIVKSYGNLVHQVEDSRVIARNDSNKQVGLVSGGGSGHEPAHA GFVGDGMLNAAVLGDVFTSPTPDQILTGIQAADQGAGVLLIVKNYTGDILNFEMAKDMAD MEDIHVEMVVVDDDIAVEDSTYTAGKRGVAGTVLVHKILGHHARQGASLEELVSLGEKIV SSTKTIGVALKAATVPEVGKPGFTLPEDEIEFGVGIHGEPGYRREKIQPSKELAKELVEK TLSSYEQQPQTVGVLVNGMGGTPLMEQFVFMNDVLTLLEDKGVQVTFHKVGNYMTSIDMQ GLSLTMIDLATKDWQTALESNVATISW >gi|308151755|gb|GL476267.1| GENE 119 99053 - 99451 572 132 aa, chain - ## HITS:1 COG:DRB0052 KEGG:ns NR:ns ## COG: DRB0052 COG3412 # Protein_GI_number: 10957457 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 127 1 127 133 85 41.0 3e-17 MKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEADS DREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFAAAITAGVSDDLTQIL AEAQNAGKKGWN >gi|308151755|gb|GL476267.1| GENE 120 99464 - 100603 1508 379 aa, chain - ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 372 14 375 380 283 42.0 5e-76 MRKALILPTKYVQGEDELLNLGYFVSTFGKKALLIANPADVDRVRPQLEETAKKFDITFV EGGFSGEVTREETKRLQNVGQKEQADCIIGLGGGKAIDASKVVAEGENLIIVPTIAAQDA PTSHSAVLYHEDGSFDDYAYFKQSPSVVMVDTKVVAKAPTRFLVAGMGDALSTYFEARAT HNSYSRVNASLPMGSREGLTPAASGTYAALAMAKLCWENLQEDGLKAKLACDANVVTESL NKIIETNILLSGLGFESGGLAAAHAIHNGMTVLPGAHSYLHGEKVAFATIAQLVLEDAAK DELEAVLDFSASVGLPLTLSDIGVDEITYEEALEVAKIACIPEESIHSMPFPIVVEEVAN AIIVADKVGQEYKTRHKLD >gi|308151755|gb|GL476267.1| GENE 121 100764 - 101750 895 328 aa, chain + ## HITS:1 COG:lin1114_1 KEGG:ns NR:ns ## COG: lin1114_1 COG4936 # Protein_GI_number: 16800183 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Listeria innocua # 15 117 13 115 149 107 42.0 4e-23 MTVELKNILDLEKWEKLQESLALSTRLAIILVDYKGRPVTKHSQVQPFCQLVRHSPELSK LCEKCDARGGLEAVRTGQPFIYRCHFNIVDMAIPIIVDDQYVGAIMAGEVLLEDHQEELE QVLTMNDAFIQEFLVTHQELYQQYPVLELADLEKSATLIADLSQYIISEAIKKDYLINTY KQSLQISSRKEELEPLNMIQKDIQQTLLTAQLTPSSAYQTKNKQLQPVLDALWENKSLRL NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF VEDSYFVRIFKQETGETPLKYRKRKNRA >gi|308151755|gb|GL476267.1| GENE 122 101864 - 103270 787 468 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 307 36 2e-82 MVVGDFAIELDTVVIGAGPGGYVAAIRAAEMGQKVAIIEREYIGGVCLNVGCIPSKALIA AGHHYQEAQDSSTFGVTAKGVELDFAKTQDWKDNTVVKSLTGGVGMLLKKHKVEIIEGEA FFVDENTLRVIHPDSAQTYSFNNAIVATGSRPIEIPGFKFGGRVLDSTGGLNLKEVPKKF VIIGGGVIGAELGGAYANLGSEVTILEGSPSILPTYEKDMVKVVTDDFKKKNVTIVTSAM AKEAVDNGDSVTVKYEVNGKEESVEADYVMVTVGRRPNTDDLGLEQAGVEIGERGLIPVD NQGRTNVKNIFAIGDIVPGAALAHKASYEAKIAAEAISGKKVAVDYKAMPAVAFTDPELA SVGMTVAEAKEAGIEAKGYKFPFAGNGRAISLDKTEGFMRLVTTVEDNVIIGAQIAGVGA SDMISELALAIESGMNAEDIALTIHPHPSLGEITMDTAELALGLPIHI >gi|308151755|gb|GL476267.1| GENE 123 103278 - 104897 2110 539 aa, chain - ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 1 538 1 543 544 580 62.0 1e-165 MAYQFKLPDIGEGIAEGEIVKWFVKPGDTINEDDTLLEVQNDKSVEEIPSPVTGTVKNIV VPEGTVANVGDVLIEIDAPGHEDNDAAPAAPAQEQTPAQPAAVPTTEAAGGFFQFKLPDI GEGIAEGEIVKWFVKAGDTINEDDSLLEVQNDKSVEEIPSPVTGTVKNIVVPEGTVANVG DVLVEIDAPGHNSAAPAAAAPATDAPKAEASAPAASTGVVAAADPNKRVLAMPSVRQYAR EKDVDITQVTATGKGGRVIKADIDAFVSGGSQAAPATEAAATEAAPKAEAVAPKAAPKAF TSDLGEMETREKMTPTRKAIAKAMVNSKHTAPHVTLHDEVEVSKLWDHRKKFKDVAAANG TKLTFLPYVVKALTSTVQKFPILNASIDDAAQEIVYKNYFNIGIATDTDHGLYVPNVKNA NTKSMFAIADEINEKAALAIEGKLTAQDMRDGTITISNIGSVGGGWFTPVINYPEVAILG VGTIAQEPVVNADGEIVVGRMMKLSLSFDHRIVDGATAQKAMNNIKRLLADPELLLMEG >gi|308151755|gb|GL476267.1| GENE 124 105040 - 106017 1331 325 aa, chain - ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 498 76.0 1e-141 MAQKTMIQAITDALALELEKDENVLIFGEDVGNNGGVFRATEGLQEKFGEDRVFDTPLAE SGIGGLAFGLALQGYRPVPEIQFFGFVFEVFDEIVGQMARTRYRMGGTRNMPITVRAPFG GGVHTPELHSDNLEGLIAQSPGVRVVIPSNPYDAKGLLISSIRSNDPVVYLEHMKLYRSF REEVPDEAYEVPLDKAAVTREGTDVSIITYGAMVREAIKAADSLAKDNISAEIIDLRTVA PLDVETIINSVEKTGRVVVVQEAQKQAGVGAMVVSEISERAVLSLEAPIGRVSAPDTIFP FGQAENIWLPNAKDIEAKAREIVEF >gi|308151755|gb|GL476267.1| GENE 125 106020 - 107135 1593 371 aa, chain - ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 371 1 371 371 527 70.0 1e-149 MAKAKKQKPIDFKELMAKVDADFPTFQILDQDGKIVNEDLVPDLSDEELVELMTRMVWSR VLDQRSTALNRQGRLGFFAPTAGQEASQLASQFAMEKEDYLLPGYRDVPQLVQHGLPLRE AFLWSRGHVAGNYYAEDLNALPPQIIIGAQYIQAAGVALGLKKRGKENVVFTYTGDGGSS QGDFYEAINFAGAYQANGVFIIQNNGFAISTPREKQTAAKTLAQKAVAAGIPGIQVDGMD PLAVYAIAKEARDWSAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKEMDDEWVQKDPLT RFRKYLTDKGLWSEAKEEEIIEKTKEEIKVAIAEADKAPKQKVSDFLKNMFEVQPQTIKE QIAFYEAKESK >gi|308151755|gb|GL476267.1| GENE 126 107734 - 110343 2754 869 aa, chain - ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 869 13 856 856 898 54.0 0 MNKKTMDMRKATKDQELRKLALLSERELMMELRTSEKGLSNEDAEKRLEEFGPNEVSAQK PTPAIILFLSAFKDPFVYVLALLMVVSTLTKDFEAAIVMGVMILASVLIAFIQEYRSQKA SLDLKELIENTAAVTREGITKEIPMDEIVPGDIVTLATGDMIPADAVLIWTKDLFVNQSS LTGESMPVEKFVDAGVDRQQTEVSALDMQDLVFMGTDVLSGQGKAIILKTGQHTFFGDIA KNATTQRGKTSFDLGLAKVSKFLLRMVMILFPIVFLINGLTKGAWGEAFFFAIAVAVGLT PEMLPMIVTSNLAKGALSLSKHKVIVKELAAIQNLGGMDVLCTDKTGTITEDRVVLVQHL NPLGDLSDEVLNLAYLNSSYQTGWKNLMDIAVINFYEEHQWKTPFKNVTKIDEIPFDFSR RRLTVVVNADDHQLMITKGAVEEMEEVCTHAQINGEIVPLSSAVREELRRVNVQMNKQGM RVLAVAVKKDVHKEAVYSVEDEKEMTLIGFMGFLDPAKESAVSAIRSLHEHGVNVKVLTG DNDIVAKKVCKDVGIEVSHVLLGSQIEAMTDEELRAQVEETNLFAKLNPMQKSKIIELLQ AKGHTVGFMGDGINDAPALRKADVGISVDTAADITKDASSIILLEKSLNVLESGVIEGRK VFSNMMKYIKITISSNFGNVFSILVASAFLPFLPMLSLQLLIQNLIYDVAQLTIPWDNVD EEELLSPVRWETNGLAKFTVCIGPVSSIFDIITYLVMWFVFSANSLATQHLFQTGWFMVG LVSQTLVVHMVRTRKIPFIQSRASMPVMLSSLGAILLGFLIVATPIREVFDFVKLPANYW PWFFGIIIAYMLTVEVAKRLYIKITKEWI >gi|308151755|gb|GL476267.1| GENE 127 110819 - 111400 705 193 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 187 1 184 188 129 38.0 3e-30 MPKTRVEAFTDAVIAIILTLLILELKIPEKADWSALTQSGHKIIIYLISFVTLLIYWNNH HHLFQSVRKIDGRVLWMNNLLILTLTFFPFVTGWVGEHPFSWPPQALYGLVVLGADVAYY LVVRALIQANGPKSEVQRLFGHYPKLTLSIVLNIIALIVGKLVAPIAVLIIDTIVLVMWF IPERKAEIKEILK >gi|308151755|gb|GL476267.1| GENE 128 111571 - 113184 1577 537 aa, chain - ## HITS:1 COG:L128691 KEGG:ns NR:ns ## COG: L128691 COG0366 # Protein_GI_number: 15673660 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 9 537 13 544 545 612 56.0 1e-175 MEQWWKNAVGYQIYPRSFKDSNGDGIGDLQGIIEKLPYLKELGVDFLWLNPIYTSPNVDN GYDIADYQGIQPEFGTMEDFQELLDQAHQLGLKIILDLVVNHTSDQHPWFIEAKKSLDNP YREYYLWADATPDRMPNEWQSFFGGSTWTYDAGTKQAYFHVFAKEQPDLNWKNPKVREEI YAMIRWWLDLGIDGFRLDAISHIQKELWDFKITTNPWAPFMNVKGIEDYMLDLKAIFAEY DIMTVGEASGVSSKKAVEWTNDAGYLNMIFELEHNVREGKPGEERLNILGYKKVMARWQK HLGTEGWNALYVENHDNPRINSILGNETSHSAKAIGTIALLLRGTPFIYQGQEIGMVNYP FQQIDELDAKDSHNHYRLLIESGYDAKQALKEVAHWTRDHSRTPMQWTSQEASSFTSGHP WLAIHPNFKEINVADQETDAQSVLNYYKKLIALRKDNPVFTDGQFELLAPNHPSVFAFLR KTTEATALVIVNLSGEKCQFDLPNKLLGRKWQQLLGNQDFTVKKRMQLAPYQAGVFQ >gi|308151755|gb|GL476267.1| GENE 129 113186 - 114811 1779 541 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 539 1 534 535 686 62.0 0 MEKHWWQEVVVYQIYPRSFKDSNGDGIGDLPGIIEKLDYLETLGIGAIWLSPVYQSPNDD NGYDISDYEAIMTEFGTMADMDRLIEEAKKRKIEIIMDLVVNHTSDEHRWFIEAKKSKEN PYRDYYVWADPASDGGAPNRLKSAFSGSAWTFDEASGQYYLHLFSKKQPDLNWENQQMRQ SVYEMMNFWIDKGIGGFRLDVIDLVGKIPGEEITANGPHLHRYLQEMNAATFGGKELLTV GETWGATPEIAKMYSSPERHELSMIFQFEHMSLDQQPGKEKWDLQPMEVAKLKQVFAKWQ TELGNDGWNSLFWNNHDLPRMISRWGNDQEYWLESSKLFAILLHMMKGTPYIYQGEEIGM TNTPITDIREARDIETINMYHEYLEKGYSKEEILLKINTKGRDNARRPMQWTAEKNAGFT TGTPWIDVNSNYQTINVAAALADKNSLFYTYQEMIRLRKEHPLIVWGDFELLETVEEVIS FYRTYGEERWLVVTNFSDKVQPFSADVHVEQVMIENMPTDVTALADYSLAPWQAFVVKVS Q >gi|308151755|gb|GL476267.1| GENE 130 114839 - 116605 1607 588 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 587 1 584 584 709 57.0 0 MNTAAIYHRPESEFAYLYTEETMHIRLRTAKGDIASVQLVQGDPYLLGKEKWYQQSLTME KLVSTELYDYWFIALSAKFKRLSYAFTLVGTDGLRAFYGEHGIYPLEEKYLAMANNYFRM PYFHEIDRFKAPEWVKETVWYQIFPERFANGDPANDPEGTLPWGSKRPDRQDFFGGDLQG VLDHLDYIEDLGVNGLYFCPIFEAFSNHKYDTIDYLKIDPAFGDGATFKRLVEECHRRGI KIMLDAVFNHMGDTSPQWQDVLKNGQDSIYADWFHVNEFPASYEESADFEEASNITYDTF AFTPHMPKLNTANPEVQAYLLEIARYWIEEYDIDAWRLDVANEVDHAFWKKFRQTCDDAK EDFYILGEIWHSSQSWLQGDEFHAVMNYAYTDAIMGYFVKQELSLEKMLSEMNNQLMLYR QQTNQMQFNVLDSHDTPRLLHETKEDKELMRQVLAFTYIQPGVPCLYYGDEIGMTGDMDP DCRRCMVWEENQQDLDLKEFVKSLIALRKKYAAVFSGGTIDWTGTSFETGLIRLACRLDE QTIYGIFNTGQETQFVDRTDREVLLSSSIETASEQIMVLPKGFLLYQA >gi|308151755|gb|GL476267.1| GENE 131 116606 - 116680 70 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSFALKCVRVLENTRKATIKGEN >gi|308151755|gb|GL476267.1| GENE 132 116866 - 118116 1584 416 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 4 415 3 410 410 281 41.0 2e-75 MKANWKKILMGGILLSASAVLLTACGGAEKTKAENESGSANKAAGDVKLWVDTEYMGVFK KVVADFEKENPDIKVNLTAGNSADAKKDIAKDPKAAADVFMMPHDQIGQMAEAGLIYPNT KYEKEVKENNIDSAVEGVTWKDKVYAYPYAVESQVLYYNKDTYSPKEIKTWKSLTEKGKI GTNFGEDGANYIFGPLFMSNGDYLYGENGEDPKGTNFNNQQGIEVLQWIADQKNNPGVIQ SNTEALSNLGSGKTDAFLSGPWSKNDVEKALGDKMGAAAYPTIDFGNGEKQMKAFLGVRS FAVNQQTQAPLAAMTLANYLTSEKAQMTYFKEIGFVPSNKKLQTNEEITQDTVAKAILEM AQPTHSVVMPKIPEIVSFWPAMDAVINDTYKGNIKPADYQAKLDKLVQDTSKEAKE >gi|308151755|gb|GL476267.1| GENE 133 118202 - 119545 1187 447 aa, chain + ## HITS:1 COG:SPy1295 KEGG:ns NR:ns ## COG: SPy1295 COG1175 # Protein_GI_number: 15675248 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 10 447 11 450 453 541 67.0 1e-154 MFKKKKAQTSFREVFKKGDFATKLSFLVMGAANFANKQWLKGIIFLTAEIGFIYWLIRNG FHALMMLGTLGTQQQGLVYDDSLGIEVLKEGDNSMLLLLFGIAAILVCLSLIILYVINLK SARHLYELKTAGKKIPTTMDDLRSLLNERFHATLMTIPLLGVLFFTILPLLYMISIAFTN YDHNHLPPKNLFTWVGLANLGNVITGDMASTFFPVLGWTLIWAVFATATCFFFGIILALL INTKGLKYKAFWRTIFVITMAVPPFVSLLIMRNLLNGSGPINALLLNWGLIDSSIPFLTD PNWAKLTIIVVNMWIGIPATMLISTGIIQNLPEDQIEAARIDGANKWQIFKSITFPQILF VMTPALIQQFIGNINNFNVIYLLTGGGPANSNFYGAGSTDLLVTWLYKLTVDTMDYNLAS VIGILIFILSAVFSLIAYTRTNSFKEA >gi|308151755|gb|GL476267.1| GENE 134 119549 - 120412 665 287 aa, chain + ## HITS:1 COG:SPy1296 KEGG:ns NR:ns ## COG: SPy1296 COG3833 # Protein_GI_number: 15675249 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 8 286 2 278 278 327 67.0 1e-89 MAKAKSYQKKQRTALTSVYIILTILAVFWMFPIVWIILTSFRGEGGAFVPYIIPKTFTLE NYKVLLTNQTGNFPFVRWFLNTLFVSIASCLLSTFITIAMAYALSRLRFRLRKPFLKVAL VLNMFPGFMSMIAVYYILKALNLTESLFALILVYSAGSALGFYIAKGFFDTIPMALDESA MIDGANKWQIFTKITLPLSKPIIVYTSLTAFMGPWMDFIFAKVIMGDKVENYTVAIGLFS MMTKSTANSLFMAFTAGCVLIAIPITILFILMQRFYVEGVTSGSVKG >gi|308151755|gb|GL476267.1| GENE 135 120450 - 120938 502 162 aa, chain - ## HITS:1 COG:no KEGG:EF1342 NR:ns ## KEGG: EF1342 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 252 100.0 3e-66 MDKEKHSSNLDISVFTEIFSYMSQLLFKDLDLEDLKLTKLDMLILLIVATNEGISMTELA NQVGTSKVQVSRSIAGLEERAIVQRRHNQENRRVVNVYTTKEGEKLFKQKENQVKQQLSE TLSVLSLEDYQEVNQHFLAVMKILSNYQALRRKTCKENNAKK >gi|308151755|gb|GL476267.1| GENE 136 121084 - 122391 1144 435 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 230 42.0 5e-60 MLELKEIKKYYTVGGTTTKALDGVSVAFRKQEFVAILGPSGSGKTTMLNVIGGLDNYDSG DLIINGKSTKNFKEADWDAYRNNSIGFIFQSYNLISHQGILDNVELGMTLSGISKAERRQ KAEDALIRVGLKDHIHKKPSQLSGGQMQRVAIARALANDPDILLCDEPTGALDSETSLQI MALIQELSKEKLVIMVTHNPELAHEYADRIIEFSDGQIRHDSRPHIEHEKKEPFELKRTK MKFTTALRLSFNNIRTKKGRTFLTAFASSIGIISIAIVLSLSTGFQKQIDKTQSETLAQF PITISKIATDQDPESFNNQDKKGTFPKEKEVTAKISDADRAQHTNLIDQKFIDYVNHIDP ELSNNIGYTRLVNMNLLREINGKAQAVKFSNDAPDGQSNAMASMMAAQTGVGVSAFPKQL ENGKKQFLKRQLLVA >gi|308151755|gb|GL476267.1| GENE 137 122384 - 123424 1369 346 aa, chain + ## HITS:1 COG:L119891_2 KEGG:ns NR:ns ## COG: L119891_2 COG0577 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 210 346 238 374 374 97 40.0 2e-20 MLEGNYPEKETDVVLIVDSNNTTNINALKNLGFDVKDNQKIAFSDIVGTKMKLANNNAFY TKLPTGNFIPNQDLQAVYDNPENTELTISGILRIKDSSTMNLLAPGIAYSDALSTNMIAK NKTSDIVKAQEASNTNVMTNETLDASAKENLLSYLGANEIPSSIMIYPNDFKSKDKILDY LDAYNKGKDKKDQIIYSDLAGTMTRLTGGLMDAITYVLIAFAGISLVTSMIMIGIITYTS VIERTKEIGILKALGARKKDITRVFDAETAILGVASGILGVVIAFLATFPINAVLYNLTD LENVATLNPIHGIILIVISTILTMIGGHIPARMAAKKDAAVALRAE >gi|308151755|gb|GL476267.1| GENE 138 123461 - 123544 93 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLPRFFLLSIHNHLVYGGFIKITNKK >gi|308151755|gb|GL476267.1| GENE 139 123543 - 124043 568 166 aa, chain + ## HITS:1 COG:no KEGG:EF1340 NR:ns ## KEGG: EF1340 # Name: not_defined # Def: pheromone cAM373 precursor lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 288 99.0 4e-77 MLKKPFLLFFSLLGAIFILASCGIGKDAVTDTKYKVSLQQAAEIYEKEAGNSKPLVNVQF DTEPASDYSYIFTNETETLYVNPETGKVTKNTEANQLGENETAFSAAEVKELGAVNDVLA KAKKEVGGLSPRILTWKLTKNNNKLVYTVDVKTTTADEKVTLDANK >gi|308151755|gb|GL476267.1| GENE 140 124240 - 124701 663 153 aa, chain + ## HITS:1 COG:no KEGG:EF1339 NR:ns ## KEGG: EF1339 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 291 100.0 8e-78 MVYTVDFKEVATIGLESSPVAPALAGLRANEARYFWNKYKHRFTTVPASEAPETLAWIEK ILLERELHFPYKPLEISSFTLDGIKMAYVFYENGLAVNVMYTLAEEGKRAVGFKLSDGMA IPAEFEGKFKFARQKSKLAGTIRGSYFVIKGTY >gi|308151755|gb|GL476267.1| GENE 141 124744 - 125658 630 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 306 306 247 43 3e-64 MYDVIIIGAGPAGMTAALYASRSNLSVLMIERGAPGGQMNNTAEVENYPGFDSIMGPELA YKMYENVEKFGTENAYGIVMGIEDHGSYKEVICDDKSYEAKAVIIATGCEHRKLGVKGEE EFAGRGVSYCAVCDGAFFKNKRLVVVGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKI IQDRAFANEKISFVWDTVVEEIVGNEMVVTGVKARNVKTDEVSEIEANGVFIYVGLDPLT EPFKKAGITNEAGWIETDQEMRTKIPGVYAIGDVREKTLRQITTAVGEGGIAGQQVFNYI EELK >gi|308151755|gb|GL476267.1| GENE 142 125827 - 126258 354 143 aa, chain - ## HITS:1 COG:no KEGG:EF1337 NR:ns ## KEGG: EF1337 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 268 98.0 5e-71 MLQKYIEILTRDEVIFRKKPDGTEVNYFLFPEFEIHINSLPGKTVQGWHKHHEIEEVLLV QSGKVKIEELENQQIVSRICAEGELIRMHNSLHRISNPDTLSASFTVFRFVPQGQNQQEC IKNDKEEFSDAAVQRLLKINDSL >gi|308151755|gb|GL476267.1| GENE 143 127078 - 127785 940 235 aa, chain - ## HITS:1 COG:L0151 KEGG:ns NR:ns ## COG: L0151 COG2188 # Protein_GI_number: 15673419 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 235 4 235 235 264 56.0 1e-70 MVQNIPIYIQIHDKIKEDIEKGVWSIGDRLPSERELALKFDVSRMTLRQAIQTLADEGIL ERKIGSGTYVARKKVQETMTGTTSFTEITLSQNRVPSSRTVSYFVAKPSSSEMEKLQLGP EDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQT ISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK >gi|308151755|gb|GL476267.1| GENE 144 127992 - 132239 3620 1415 aa, chain - ## HITS:1 COG:L104115_1 KEGG:ns NR:ns ## COG: L104115_1 COG1924 # Protein_GI_number: 15674220 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Lactococcus lactis # 2 633 4 634 634 908 70.0 0 MVTRAGIDVGSTTVKLVFLNKQNQPIFTKYERHFSDVKAATERILKEGLARIGADQPVTM SITGSGGMGLAEVLGIPFVQEVIACTRTVETIIPETDVAIELGGEDAKITFFDGALEQRM NGSCAGGTGAFIDQMAVLLKTDANGVNELAKNYQTIYPIASRCGVFAKTDVQPLINEGAA KEDIAASIFQAVVNQTIAGLAAGRKIKGKVAFLGGPLFFMSELRKRFVETLAIQPEDVIF PEQPQLFVAMGAALYSEDAAECTLEELIQRLVNSQATDLQPSDTLPPLFNSAEDLADFRE RHAQAQAKEKPLSQHTGVTFLGIDAGSTTTKVTLIDEDGHLLFSFYGNNQGQPLETTMTV LKSLYQQLPEEVFIGKAAVTGYGEQLIKNALKVDIGEVETMAHYKAANHFQPGVDFILDI GGQDMKAMTIKNGVLSSIQLNEACSSGCGSFIETFAQSLKYNVKDFALAALESQAPVDLG SRCTVFMNSKVKQVQKEGASVGDISAGLSYSVIKNAIYKVIKVRRPEELGEKIVCQGGTF YNEAVLRAFEKISGREVVRPSIAGLMGAYGAALIALDAYEIGEETTLLSLEELAAFTSEK EFTHCGLCENNCQLTVTVFSDGRQFITGNRCERGARIKIKREERKVNLVDYKYRKLFKYR PLRENKAFRGRLGIPRVLNMYENYPLWHTFFTDLGFRVELSPRSNKQIYEQGLETIPSDT VCYPAKMAHGHIQALIDAQVPIIFYPGVVFEQQETVEADNHFNCPIVQSYPDVIRNNVDA IREGQVDYRNPYLNLANEAAVAKVLAENFADLGISLEEIQTALHHGYQELAAFKKEIQEK GEETLAMLTEKGQRGIVLSGRPYHLDPEINHGIAEVITQEGFHVLTEDSISHLGDVQNLR VVNQWVYHSRLYAAAKVVAKTKNLELVQLNSFGCGLDAVTTDQVEEIMDRSGKIYTVLKI DEGANLGAIRIRLRSLKAAVNEREKQQFVPHMQMEEPEKIVFTKQMKKTHTLLLPMLSPI HQSGLVDVALQASGYHVVCLPAQDKEAVNVGLKYVNNDACYPAIISIGQLVEALESGQYD LDNVSVLMTQTGGGCRATNYIPLLRKALNDAGFSQVPVVSVSMGNKGVESNPGFKFTLPM IKRLVVAFLYGDLFERVVYRTRPYETEKGMVDQLHQDWLKRVEANVRNGSLTQFNHFMKK IIRTFDEIPLQEIKKPKVGVVGEILVKYSPTANNDIVRLLEEEGAEAVVPDIVGFMNYSL YNQIWKYENMGMSKQSKRLAEFTIKIIELVEKPMDKALRKSVRFDGIHSIYDMAADASKI LSIGNHTGEGWFLTAEMIELLKHEVNNIVCMQPFGCLPNHIVGKGVVKELRRQYPQANIA AVDYDPGVSLVNQLNRIRLMMATANKLLKEENVKR >gi|308151755|gb|GL476267.1| GENE 145 132418 - 133026 481 202 aa, chain + ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 202 1 202 204 198 48.0 6e-51 MAKKTDLRVQRTRKMIIEAFFKLVETKGYEAVTIQDIADEAMINRATFYAHFKDKQHLYD AIFTFTLSAFTAILDSQQLVNGNRVRVKHIEELLTQLYINIQENKSFFLTIMDNNFNEHF RKRLAEIIEEKYATIFSQLRITENDIDVPIDFVIEYMTSIFIGTLHWWITSETDMTPNHL AQLVIKLVGNGHLTVLGIELEK >gi|308151755|gb|GL476267.1| GENE 146 133082 - 133261 234 59 aa, chain - ## HITS:1 COG:no KEGG:EF1325 NR:ns ## KEGG: EF1325 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 92 98.0 4e-18 MNFKEKITEMVGNVYDLARDGKYDVKVDLIPRKKGNIKSGVKVTSSRNTAHNIKWRSKN >gi|308151755|gb|GL476267.1| GENE 147 133674 - 133907 360 77 aa, chain - ## HITS:1 COG:no KEGG:EF1324 NR:ns ## KEGG: EF1324 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MSKKNKDIEVRVEEEKAQYNGANVLMNKLFIGKKEIGRVIPQNDKKFIIEIDGKQEGTAK NLDEAFETIIRQWNLSE >gi|308151755|gb|GL476267.1| GENE 148 134054 - 135523 2158 489 aa, chain - ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 473 3 486 509 532 68.0 1e-151 MGILLPIIIAVLVLLMLLIVFVSKYQTAKPDEALIISGSYLGSKNVHVDEGGNKIKIVRG GGAFVLPVFQRSNRISLLSSKLDVSTPEVYTEQGVPVMCDGTSIIKIGSSVEEIATAAEQ FLGKTTEELENEAREVLEGHLRSILGSMTVEEIYQNRDKFSQSVQEVASVDLAKMGLVIV SFTIKEVRDKNGYLDSLGKPRIAQVKRDADIAEAEALKETRIKKAEAEKESQQAELQRQT EIAEASKEKELKLALYKQEQDIAKAKADQAYNLESARAQQHVVEQEMEVKVVERQKQIEL EEKEITRREKQYDSEVKKKADADRYAREQEALAQKAREVAEAEAERFKVEALAEAEANKT RLTGQAQAEAILARGAAEAEAKQKIADAFKEYGEAAVLSMVMEMLPQLMKEAAQPLGNID KISVVDTGAGGENSGANRITNYATNLLAGTQETLKETTGLDVKELIENFSKKGTSNSVNY HATEGSEKE >gi|308151755|gb|GL476267.1| GENE 149 135540 - 136064 629 174 aa, chain - ## HITS:1 COG:no KEGG:EF1322 NR:ns ## KEGG: EF1322 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 174 1 174 174 305 100.0 5e-82 MLEGLPLETVYFYALVGSAVLAFLLIIFGDVFNFDGPVDPMLIIPWIAFTSLFGYLGEEL TAVNSWLILIVSGILSTIIVFFLNFYVLVPLKNSEATISISEKDMEGRVATVITPIPVRG MGEIQLKSVTGSLSRPAAFYVPQEVAAPRGSEVLIIELKERVCYVIPYEGSLKI >gi|308151755|gb|GL476267.1| GENE 150 136257 - 138893 2648 878 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 876 7 894 896 581 37.0 1e-165 MKKTALIKTSLREIRQSTTRFLSIMGIIFLGVMVFVGLKATGPDMIKTANNYYQKEQLPD ARIISTMGLEKKDLTTLQSLKDVETVVPRYTIDATIGPQNNAVKLFGYRKNQAGSVNYQV VDGRLPKQTNEIALDTLAKTRYDYKMGDKITLNDAAIKEKGLTQTHFTVVGFINSPEYID NTSRGTTTVGSGTLNFFGVVSEKAFDSQRYPELLISFRSLKHQNTYSPDYEKKREQALNQ VKEALKNRPEEQVAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQKDELA KQEQLLAEKETELANLKAPTYYYFTREDNPGFSEYQDNADRISSLATLFPLFFFLIAALV SLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKII FDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGAALVTLRIDLLSTPATLLRPKAPKA GQRILLERIRPLWQRMSFIQKVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVD VATIQFNKIWHYQAVVTFKEQTTAEETKEYQETLRKLDGLNKTIPLYSEIFKTKGKGAPT QNITLYVPQDPSKMAEFQLFNDRVTGEKYSLNDDGVIINEKLAKLFGYKVGDQLNLENSD NQTYHVKIAAIAENYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFDKKLSSKQETSIGEVL TKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIREL STIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPIIHW PSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKSNE >gi|308151755|gb|GL476267.1| GENE 151 138903 - 139604 344 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 218 2 219 245 137 37 4e-31 MAYIEVKNEYKRYQMGETTITANDGISFEVEKGEVAVILGPSGAGKSTVLNILGGMDSCD EGEIIIDGTDIAQFSEKQLTTYRRNDVGFVFQFYNLVPNLTAKENVELASQIVADALDST NVLQSVGLGERLDNFPAQLSGGEQQRVTIARAIAKKPKLLLCDEPTGALDYETGKQILTI LQNTARETGTTVLIITHNSAIAEMADRVIRINDAKVREMTVNDQPKLVAEIEW >gi|308151755|gb|GL476267.1| GENE 152 139765 - 140424 646 219 aa, chain + ## HITS:1 COG:no KEGG:EF1319 NR:ns ## KEGG: EF1319 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 380 99.0 1e-104 MANRKKKPPFNSTIMLIGALIILILGAVGVKVPDALQDLFNVQPQTTTPSSTPAPKGDNP GPIENGKATFSAEELKDNSNGWITYHSLDRLKRATGADALLKPAMVNTGTSANKDIRPAG FISGKANHSRGHLIGRQMGGSGDDPRNLTTLYQNPVNTPYMTKYENQIRAALDRGETVRY RVTPVYNGNDLLAEKIILEAKSLKTNSPIDFSVTILNKQ >gi|308151755|gb|GL476267.1| GENE 153 140438 - 140824 618 128 aa, chain + ## HITS:1 COG:no KEGG:EF1318 NR:ns ## KEGG: EF1318 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 197 100.0 1e-49 MDFEQLKETLPDAKPQTFLQAILSQPQEEDAELTFSEEIDEQFVENCKFLASPETISETD VEHWREQEFLVVAQSLDGDYLAGTLEQTFVIPSSLYKEDIEQFDKQLIDFFIAYENKEIT SAILPKEL >gi|308151755|gb|GL476267.1| GENE 154 140866 - 142014 1485 382 aa, chain - ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 382 382 484 63.0 1e-137 MKTFIFADKFFLKSDVKGPGYLEITDGIFGNYTKDEPQGDVKIIREEGKWIAPGLVDTHI HGYMNHDVMDNDAEGIKVMSEGLLSCGVTSFLPTTLTSSKERLTDVARTIGQVYQEVPGA KIQGIYFEGPFFTEEHKGAQNPSYFGDPDLDTFHEWQEASGGIIKKIALAPERNGVKEFV ETVTDEGVVVALGHSNATLEEADVAVEAGASVFVHAYNGMRGLNHREPGMVGALLTLQHV FSELICDGHHVHPQAAEVLMEKAGHDHVALITDCMMAGGMPDGNYNLGEFPVVVAEGTAR LDTGNLAGSILKLKEAIKNVVDWGIATPAQAIMMASLVPAISCKIDDQCGMIANGRDADF IVLEPTMELAATYLDGVERYRA >gi|308151755|gb|GL476267.1| GENE 155 142115 - 142942 945 275 aa, chain - ## HITS:1 COG:no KEGG:EF1316 NR:ns ## KEGG: EF1316 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNSLGAVIKEIRKNRKLTQKMLSEDICSQSVLSRIENNEELPNVLVMQQLCDRLGVTVDQ IMRYKSGDVHVVTYSFEKMAEYFRHKKYQLLLNYLKENRIEEQLYLDTDWQKYYYYLGSC ELFVLNDYEKAIASLRKGLSFTYKADKLNVSDLEIQLISCLGATYGYMGNRVEAERFLSL SIHYFNQLPNERSNAELTKIFFNYADFLFKNYTEKDAEIYVDQGITWARKKNSYYYLSEL LNLKYLVLMRKNKHEEAERYLNLAQQMKNVESGNL >gi|308151755|gb|GL476267.1| GENE 156 143120 - 143296 300 58 aa, chain + ## HITS:1 COG:no KEGG:EF1315 NR:ns ## KEGG: EF1315 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 93 100.0 3e-18 MAEEKKVHFIWEKTNYSGFVEKEYENSYLIVVANPSPDMEEKYTNRMIISKKACETAE >gi|308151755|gb|GL476267.1| GENE 157 143362 - 144579 1052 405 aa, chain - ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 404 1 404 404 670 76.0 0 MRNFKKSDKLNNVSYDVRGPVLEEAERMQEEGIRILKLNTGNPAPFGFDAPNEIVRDMIV NVRDSEGYSDSKGIFSARKAIEQYCQLKKFPNVTINDIYTGNGVSELITMCMQGLLNNGD EVLVPMPDYPLWTASVSLAGGTPVHYICDEQAEWYPDIDDIKSKITSNTKAIVIINPNNP TGALYPKELLLEIVEVARQNDLIIYSDEIYDRLVMDGLVHVPIATLAPDLFVVTLNGLSK SHRVAGFRCGWMVLSGDKSRVKGYIEGLNMLASMRLCSNVLSQQIIQTALGGYQSVDDLL LPGGRIYEQREFIYNAINDIPGLSAVKPKAAFYIFPKIDTAKFDIYDDEKFVLDFLHKHH ILLVHGGGFNWQQPDHFRIVYLPKMEDLKTTADKMREFLSTYKQK >gi|308151755|gb|GL476267.1| GENE 158 144978 - 145463 322 161 aa, chain - ## HITS:1 COG:SPy0581 KEGG:ns NR:ns ## COG: SPy0581 COG3091 # Protein_GI_number: 15674669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 14 152 3 139 145 146 50.0 2e-35 MKESQPVLMTDQALQTLVEKISIVFFQKPFLHQATFNRRLKTTGGRYHLASHHLDFNPTV FLKYGQEELEKVIKHELCHYHLHLAGKGYQHKDKDFKELLAKTGGARYAPPLVERKKAVF HQYQCQSCGEVILRKRRIDTTRYVCGKCHGRLSWQAKKEQI >gi|308151755|gb|GL476267.1| GENE 159 145466 - 147658 195 730 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] # 651 720 204 272 403 79 60 7e-14 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADETKINDYFQRQLIGKQATSFAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|308151755|gb|GL476267.1| GENE 160 145466 - 147658 874 730 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein [Blastopirellula marina DSM 3645] # 200 650 312 769 1043 341 43 1e-92 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADETKINDYFQRQLIGKQATSFAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|308151755|gb|GL476267.1| GENE 161 147756 - 148490 804 244 aa, chain - ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 1 235 1 235 235 191 40.0 8e-49 MKPYVYVISDIHGQADLFDALLTDYDPVEHQLVLIGDLNDRGPHSKACFLKGKELVEQHG AVYLRGNHEEYFLQFLQNPEDWFTGYVRNGGKETIESLLHPGATAEYSPTEMALMIRSRY PELIDFLTKRPLYFEWEHYLFVHAGVDLTMEDWWQTAPKDFLWIREPFHQGKNNTGKTIV FGHTITPMLHGDMQTTDLWQSDGKIGIDGGAIFGGSVHGVIFNEKGIVQDIEYQKRTPAW QPEF >gi|308151755|gb|GL476267.1| GENE 162 148623 - 149378 712 251 aa, chain - ## HITS:1 COG:PH1848 KEGG:ns NR:ns ## COG: PH1848 COG0842 # Protein_GI_number: 14591595 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Pyrococcus horikoshii # 22 214 5 217 255 62 23.0 9e-10 MKILQAFVGELRKYLFEIKMYYPDQIVSTVITIFIFIGMGLMSGNTSESSFYIGFVYWFL LSSLIGEASVSTSSEKQMGVLEQLMIQPIGLKKLILIRSSIWGVVNLVKVLVALIILKVI LNLTLGFHMLLVPIFFIASLGILGFTMLLCGLTLKFTKTASFESIISYGIMILSGAIFPL GLLPNWLQKIGQLLPITKGIKISQTLIQGEAISSGEYLLFIIISVSYLTLGILAFDSIYD KSKSAGVDRRY >gi|308151755|gb|GL476267.1| GENE 163 149350 - 150006 494 218 aa, chain - ## HITS:1 COG:SP1426 KEGG:ns NR:ns ## COG: SP1426 COG1131 # Protein_GI_number: 15901279 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 16 135 88 205 244 94 40.0 2e-19 MGAVLESVDNIYPFLSGIENIRYFLSLSGKSYKKEKQKVHQWVQRFQLQQAIHKPAGAYS RGMQQKLAIICALVKETDILFLDEPTLGLDFQSNKEIMAIIEELAHQEQKTIVLTSHQAD VLETLSDRVLLLNNGKQLYYGSYSTFIKQFESDMYEIVFNFLGEPSKEIILEGEETAQLE LQNLIKQGYQINRFEKRKKNIEEILREVYHENSTSIRW >gi|308151755|gb|GL476267.1| GENE 164 149982 - 150236 241 84 aa, chain - ## HITS:1 COG:lin1677 KEGG:ns NR:ns ## COG: lin1677 COG1131 # Protein_GI_number: 16800745 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 2 65 3 66 306 64 48.0 4e-11 MEEVIKCQNLTKKFGQELIFEDLSFAINKGEIFVILGKNGAGKSTLIKILLGMIYATKGE VKYAGIKKIILLSYIAKWEQFWNQ >gi|308151755|gb|GL476267.1| GENE 165 150220 - 151329 554 369 aa, chain - ## HITS:1 COG:TM1325 KEGG:ns NR:ns ## COG: TM1325 COG0641 # Protein_GI_number: 15644078 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Thermotoga maritima # 12 360 69 430 454 132 27.0 9e-31 MTINMNKTCKSDKEELLNPVRNSYLFSDKVARYVVHLNYDCNLKCSYCYQNVIPEKEVMT EVTVNEVVNFINVSVNDIQPEQVDICFIGGEPMLHSKSIENIMKTLSVPRERTHFNMVTN GTIMGRKYQRLYDLGLKELMITLDGPRLIHDNFRVSKHGSGSFDKILENIALLNEKYPDI NIQINCNLNAENVDSIPELIQQLKVQNITYPLIFSDVIDTKDEQYEYTLKEDTHWYEVHK IALEEGYTYEPFYRDIFLGCSMFQKNNFIIGANGYLYSCIEAVGLKQFQQVHVREYGEFM FDFIRSQEINKNESLEDCIECKFLPVCDGGCYYKRFSKTFKCPKNSFESNSIPLVHEFSE RMYLNGRSD Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:59:12 2011 Seq name: gi|308151754|gb|GL476268.1| Enterococcus faecalis TX4000 genomic scaffold Scfld39, whole genome shotgun sequence Length of sequence - 1506 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 1 - 1443 100.0 # AY692453 [D:1..1570] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:59:27 2011 Seq name: gi|308151753|gb|GL476269.1| Enterococcus faecalis TX4000 genomic scaffold Scfld40, whole genome shotgun sequence Length of sequence - 55875 bp Number of predicted genes - 48, with homology - 48 Number of transcription units - 27, operones - 14 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1094 1171 ## COG1705 Muramidase (flagellum-specific) - Prom 1157 - 1216 8.4 + Prom 1107 - 1166 6.7 2 2 Op 1 . + CDS 1411 - 2070 704 ## EF0798 hypothetical protein 3 2 Op 2 . + CDS 2070 - 3095 1083 ## EF0797 hypothetical protein + Term 3108 - 3171 10.8 + Prom 3174 - 3233 7.7 4 3 Op 1 1/0.333 + CDS 3263 - 3913 631 ## COG0671 Membrane-associated phospholipid phosphatase 5 3 Op 2 6/0.000 + CDS 3929 - 4897 1024 ## COG1242 Predicted Fe-S oxidoreductase 6 3 Op 3 . + CDS 4897 - 5460 621 ## COG0500 SAM-dependent methyltransferases + Term 5461 - 5515 17.0 - Term 5449 - 5503 13.2 7 4 Op 1 36/0.000 - CDS 5518 - 6186 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 8 4 Op 2 1/0.333 - CDS 6191 - 7270 1387 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 7297 - 7356 7.6 - Term 7295 - 7358 15.6 9 5 Tu 1 . - CDS 7408 - 8013 572 ## COG1309 Transcriptional regulator - Prom 8033 - 8092 8.6 - Term 8367 - 8419 8.4 10 6 Op 1 35/0.000 - CDS 8423 - 10192 169 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 11 6 Op 2 . - CDS 10192 - 11907 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 11954 - 12013 3.4 + Prom 11971 - 12030 8.8 12 7 Tu 1 . + CDS 12161 - 12823 639 ## EF0787 TetR family transcriptional regulator + Term 12915 - 12954 2.1 - Term 12654 - 12696 0.2 13 8 Op 1 . - CDS 12912 - 13703 925 ## COG0627 Predicted esterase 14 8 Op 2 4/0.000 - CDS 13742 - 15208 1690 ## COG0477 Permeases of the major facilitator superfamily - Prom 15278 - 15337 10.5 - Term 15306 - 15372 20.4 15 9 Tu 1 . - CDS 15378 - 16562 1819 ## COG0192 S-adenosylmethionine synthetase - Prom 16650 - 16709 8.2 - Term 16726 - 16774 9.1 16 10 Op 1 . - CDS 16778 - 18655 1849 ## COG1835 Predicted acyltransferases - Prom 18712 - 18771 4.2 - Term 18802 - 18854 15.1 17 10 Op 2 . - CDS 18856 - 20187 1565 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 20263 - 20322 75.4 + TRNA 20246 - 20317 57.5 # Arg CCG 0 0 - Term 20882 - 20922 7.5 18 11 Tu 1 . - CDS 20931 - 21131 373 ## COG1278 Cold shock proteins - Prom 21247 - 21306 6.7 19 12 Op 1 . - CDS 21365 - 21772 480 ## EF0780 MutT/NUDIX family protein 20 12 Op 2 . - CDS 21798 - 23585 1453 ## COG0584 Glycerophosphoryl diester phosphodiesterase 21 12 Op 3 . - CDS 23657 - 24124 513 ## EF0778 hypothetical protein - Prom 24167 - 24226 7.9 - Term 24233 - 24285 17.0 22 13 Op 1 . - CDS 24298 - 24681 393 ## EF0776 hypothetical protein 23 13 Op 2 . - CDS 24706 - 27603 3383 ## EF0775 anchor protein, putative + Prom 27982 - 28041 6.2 24 14 Tu 1 . + CDS 28068 - 28472 502 ## EF0774 hypothetical protein - Term 28437 - 28487 6.6 25 15 Tu 1 . - CDS 28493 - 29011 570 ## EF0773 hypothetical protein - Prom 29040 - 29099 6.0 + Prom 29118 - 29177 6.7 26 16 Tu 1 . + CDS 29207 - 29800 897 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 29804 - 29859 19.1 - Term 29800 - 29838 9.5 27 17 Tu 1 . - CDS 29845 - 30363 601 ## COG1651 Protein-disulfide isomerase - Prom 30395 - 30454 9.6 - Term 30414 - 30467 12.2 28 18 Tu 1 . - CDS 30477 - 31400 1167 ## EF0769 hypothetical protein - Prom 31454 - 31513 3.8 - Term 31564 - 31620 7.6 29 19 Op 1 12/0.000 - CDS 31634 - 32569 1082 ## COG1481 Uncharacterized protein conserved in bacteria 30 19 Op 2 12/0.000 - CDS 32603 - 33598 1106 ## COG0391 Uncharacterized conserved protein 31 19 Op 3 . - CDS 33598 - 34485 1008 ## COG1660 Predicted P-loop-containing kinase - Prom 34509 - 34568 6.1 - Term 34579 - 34616 6.4 32 20 Tu 1 . - CDS 34651 - 35445 809 ## EF0764 hypothetical protein - Prom 35483 - 35542 10.9 - Term 35555 - 35597 8.0 33 21 Op 1 7/0.000 - CDS 35617 - 38436 3115 ## COG0178 Excinuclease ATPase subunit - Prom 38476 - 38535 2.0 - Term 38487 - 38542 17.1 34 21 Op 2 . - CDS 38554 - 40551 2274 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 40703 - 40762 6.6 + Prom 40747 - 40806 5.3 35 22 Op 1 16/0.000 + CDS 40830 - 42998 2455 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 36 22 Op 2 . + CDS 43000 - 43737 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 43744 - 43784 8.6 - Term 43732 - 43772 8.6 37 23 Tu 1 . - CDS 43785 - 43994 293 ## EF0759 SapB protein, putative - Prom 44059 - 44118 4.0 38 24 Op 1 . - CDS 44148 - 44504 446 ## COG1285 Uncharacterized membrane protein 39 24 Op 2 . - CDS 44540 - 46444 2054 ## COG2217 Cation transport ATPase - Prom 46490 - 46549 6.0 40 25 Op 1 . - CDS 46554 - 48002 1074 ## EF0757 hypothetical protein 41 25 Op 2 . - CDS 48006 - 48455 335 ## EF0756 hypothetical protein - Prom 48497 - 48556 8.9 42 26 Op 1 . - CDS 48657 - 49751 772 ## EF0755 hypothetical protein 43 26 Op 2 . - CDS 49827 - 50567 891 ## EF0754 hypothetical protein 44 26 Op 3 . - CDS 50590 - 52689 1909 ## EF0753 hypothetical protein 45 26 Op 4 . - CDS 52709 - 53488 942 ## EF0752 hypothetical protein 46 26 Op 5 . - CDS 53505 - 54236 853 ## EF0751 hypothetical protein 47 26 Op 6 . - CDS 54236 - 54574 302 ## EF0750 cell wall surface anchor family protein - Prom 54720 - 54779 8.3 - Term 54716 - 54775 17.1 48 27 Tu 1 . - CDS 54790 - 55740 1349 ## COG1054 Predicted sulfurtransferase - Prom 55770 - 55829 9.3 Predicted protein(s) >gi|308151753|gb|GL476269.1| GENE 1 2 - 1094 1171 364 aa, chain - ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 175 344 57 225 242 165 57.0 1e-40 MKKESMSRIERRKAQQRKKTPVQWKKSTTLFSSALIVSSVGTPVALLPVTAEATEEQPTN AEVAQAPTTETGLVETPTTETTPGTTEQPTTDSSTTTESTTESSKETPTTPSTEQPTVDS TTPVESGTTDSSVAEIAPVAPSTTESEAAPAVTPDDEVKVPEARVASAQTFSALSPTQSP SEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGASTLSKAPNYNLFGIKGSYNGQSV YMDTWEYLNGKWLVKKEPFRKYPSYMESFQDNAHVLKTTSFQAGVYYYAGAWKSNTSSYR DATAWLTGRYATDPSYNAKLNNVITAYNLTQYDTPSSGGNTGGGTVNPGTGGSNNQSGTN TYYT >gi|308151753|gb|GL476269.1| GENE 2 1411 - 2070 704 219 aa, chain + ## HITS:1 COG:no KEGG:EF0798 NR:ns ## KEGG: EF0798 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 433 100.0 1e-120 MNKEHFIIELKIYLKALNPKDQAIILAKYKALFDARVAEGETEEQVAKSLGKPRVIAEEI LKEQGIELTERKIENNGWQEIPAATPAYDHPYEEESEFYYDNDSPYYQRPQHRPLTRFFQ VLGIFCLNFFFMFWVILGIALMYVGCGIAGAATLFSPIYGIYSVITQANAASFFQLSMSL FLFGASIIGWLLFLPILKFSAHVFKRYFQWNIAVLRGDI >gi|308151753|gb|GL476269.1| GENE 3 2070 - 3095 1083 341 aa, chain + ## HITS:1 COG:no KEGG:EF0797 NR:ns ## KEGG: EF0797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 341 1 341 341 582 98.0 1e-165 MKKTTGILLSIAVLAMLIGGSGAVYYYKQAEKSVTPLKESYTLKNKQAGEELHLSLKGKG PYTIYKTDSNKMGLRSPNNAFYSKAEGTLNVKEEKNKITATINTTRTQNQPELSFFNIGI FSDFTPNVSVQIPNNVKKLVIDGSTHSQVSLNAFNVDELTTNLPNSYVSLSGVKAKKMTL NSSDGIYLSADTSAKKATVETTDGDITLDSAYFDEIKNTTISGDIRVQNARGNIQATTTD GDISVYDFKGEANFSSENGDFSLDMPAVPKKLTVALVHGDIYVNSGEILRNISIKGESKL GDVQLLNKERTSYKNGRADTEFNLSSEFGDITVDTPDDDNQ >gi|308151753|gb|GL476269.1| GENE 4 3263 - 3913 631 216 aa, chain + ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 216 1 216 216 132 38.0 6e-31 MKNKLYYQFAGSCFLLVFMFLGYVVRFYPTWLKGFDQTITSFVRRPFPQLNNFFIWYTKF ANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGVGNSLLKLFFMRQRPTLEHLVT EHTYSFPSGHAVGSTLFYGTILLILPIFIKNKTVRLCVQILLGIGIFMIGVSRIYLGVHF PSDILGGFCLGLAWLLLSYPIYLEKRFVWRFQSKQR >gi|308151753|gb|GL476269.1| GENE 5 3929 - 4897 1024 322 aa, chain + ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 12 310 3 301 313 488 74.0 1e-138 MQIFPYSDDPNKRYHTWNYALRQQFGEKIFKVPIDGGFDCPNRDGTVAKGGCTFCSVSGS GDMIVAPSDPLPLQFQKEIQLMHQKWPTVDQYIVYFQNFTNTHAPVDVIRHRFEQVVNEK GVVGLSIGTRPDCLPDEVVNYLAELNERFYLWVELGLQTTFEETSAAINRAHDYQTYLDG VAKLRKHGIRVCTHLINGLPGETPAMMRENVRRTIQDSDIQGIKLHLLHLMTNTKMMRDY NEGRLQLMSKEAYVSVICDQLEMIPPEIVIHRLTGDAPFETIIGPMWSLKKWEVLNAIDA EMKRRNSYQGKYTVISGKEVFN >gi|308151753|gb|GL476269.1| GENE 6 4897 - 5460 621 187 aa, chain + ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 6 187 7 190 190 159 45.0 4e-39 MLQTALHFSHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVGPSGEVFAFDIQKEALINT EQKLTELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPATTKQA LDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQSLPQDVYSVLRYEFINQKNQPPV LFCIEKK >gi|308151753|gb|GL476269.1| GENE 7 5518 - 6186 256 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 199 223 103 34 3e-21 MANVLEMKNIYKKYGEKHTEVIALKELSFAVQPGEFVAVIGPSGSGKSTFLTIAAGLQAP TSGEVIVGGQSLNKLTKKQRLAQRFQKIGFILQSSNLVPFLTVEDQFHLIEKVDKSRKNS ELKEQLLETLGLKELRNSYPRDLSGGERQRVAIACALYHEPDVILADEPTASLDTEKAFD VVQLLAKEAKEKDKGIIMVTHDERLLKYCDRVVRIRDGELTE >gi|308151753|gb|GL476269.1| GENE 8 6191 - 7270 1387 359 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 358 2 357 357 285 47.0 8e-77 MFLGFNEMKYSKGRYVLVVLVMVLIAWLIFILSGLANGLAQGNRLAVDQWQANQVVLSKE ANSNLNVSVLDENVKETISGGKIAPIGQQSLAIRPADDKKAELTNVSLFGIEKESFLMPK VIEGNAFTDKNQVIASETLKNQGFKIGDKLTAGKYDEQLEIVGFISKSSYNIVPVIYTSL DTWRSIKYGDNPAMAKMVNGFIVRSKDNAEVKTTNKDSQVLSISDFIEKLPGYSAQNLTL DGMIYFLIVIAAFIIGIFIFVMTLQKTAMFGVLKVQGVPTSFLAKAVMLQTALLAVLGVA IGLALTGITVLFLPEAMPYATNGPRMILFSVLLILSALIGGAFSIRTIAKIDPLIAIGG >gi|308151753|gb|GL476269.1| GENE 9 7408 - 8013 572 201 aa, chain - ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 198 1 199 202 147 39.0 2e-35 MEKPNKRKADLERTRQIILSVASELFMTKGFKNTSTREIALKANITQPNLYHHFKNKKEL YLAVIEELTSRVQEELVPIISGNASVEEKLYQLIKVLLDEHPTNLFLMLNDMFQEMGPDY NRTLYQIFKKTYINNIAAIFESEPETNCLQEGISVDDATRFILYNVSALLSIEKTYQRKT VDDDVKKFIQFMLHGVLKSHK >gi|308151753|gb|GL476269.1| GENE 10 8423 - 10192 169 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 366 589 21 235 305 69 25 3e-11 MTDLIKASKFFYHYLKRYKVSFLFIFLAIFAATYLQVKAPQFVGEAIQELAKYAVNVMQG KDDKSAFVSVIWKLLIFYVLTSAASFIYSILFTQVVGKSTNRMRIGLFNKLEKLTIRFFD SHQDGEILSRFTSDLDNIQNSLNQALLQVLTNIALLVGVLIMMFRQNVELAWATIASTPI AILIAVFVISKARKYVDLQQDEVGKLNGYMDEKISGQRVIITNGLQEETIDGFLEQNEKV RAATYKGQVYSGLLFPMMQGMSLVNTAIVIFFGGWLAINGSVDRAAALGLVVMFVQYSQQ YYQPLMQISSGYSMIQLAVTGARRLNEMFDEPDEIRPENGEKLEEINKAVALNHVVFGYN PETPVLKDVSIHVDKGEMVALVGPTGSGKTTIMNLMNRFYDVNEGAVTFDGVDIREMDLD SLRSHVGIVLQESVLFSGTIRENIAFGKPEATDEEIVQAAKQANIHEFIVNLEQGYDTEI TEENNLFSTGQKQLVSIARTIITNPELLILDEATSNVDTVTEAKIQKAMDEAIKGRTSFV IAHRLKTILNADRIIVLRDGEVIEEGNHHELVEQDGFYAELYKNQFVFE >gi|308151753|gb|GL476269.1| GENE 11 10192 - 11907 197 571 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 346 551 21 223 305 80 28 2e-14 MDLIIQHAKKYKGSVVIALLAVIVMVVSALWQPKLLQQVLEAIMNDDSDKMKNLGIQLIA IAGLGLVAGVINTIFSAKVAQGVSADIREATFRKIQTFSFGNIEKFSAGNLVVRLTNDVT QIQNVIMIALQTLFRIPFLFIGSFILAMLTLPQLWWVIVALVIAVILISMLSFSQMGKHF MIIQNLIDKINGIAKENLLGIRVVKSFVQEKNQLSRFTKVSEELTTYNLIVGSLFAVMIP AFMLVANLAVVGSIFFVSNLVKDDPTLIGGVASFMNYLMQIMMAIIIGGMMMMMTSRAAV SIKRIKEVMETEPDVTYKKVPEQELIGSVEFDHVSFRYPGDEEDTLKDISFSIQPGEMIG IVGATGAGKSTLAQLIPRLFDPTEGKIEVGGVDLREVNEHSLRKTVSFVLQKAILFSGTI AQNLRHGKRDASEADMERASGIAQAKEFIEKLAEGYDAPVEERSNNFSGGQKQRLSITRG VIGEPKILILDDSTSALDARSERLVREALDKELKETTTIVIAQKISSVVHADRILVLDNG RLVGEGTHEELAATNPVYQEIYETQKGKEEA >gi|308151753|gb|GL476269.1| GENE 12 12161 - 12823 639 220 aa, chain + ## HITS:1 COG:no KEGG:EF0787 NR:ns ## KEGG: EF0787 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 404 99.0 1e-111 MEPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA IEEHFQEPALCGEWYSDLLAFMENYYDLYQQFPCAIAIEIQTVPAYPQRLRHLNQMMGIL REAGFSPEMTHLAVTSLQHLLFGMIMDATEEKQLVSQVLNGDDYLKEQVLHMKQYVSDNE LTYMEESIQFRHSIHQKSAFIQAVKTYLDGLQADNTSSSK >gi|308151753|gb|GL476269.1| GENE 13 12912 - 13703 925 263 aa, chain - ## HITS:1 COG:L12887 KEGG:ns NR:ns ## COG: L12887 COG0627 # Protein_GI_number: 15673753 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 1 261 1 249 258 202 43.0 4e-52 MAFLQANIYSNVLEMEMNVNVILPQETVKKVGTSTQAALTDIPVLYLLHGMGGNHSVWAR RTSIERYVADLGIAVIMPSTYLAWYTDTQYDMNYWTFISEELPKICHQLFPQLSTKREKT FAAGLSMGGYGALKLGLAKPESFAAVASLSGAVSLSSTSFGELLKVRKRSYWEGIFGPLD QIEGSIHDPLYLLQQLVESQTEMPQFYLCCGEQDMLLSANQQMAQALEQAQASYTFETGP GEHDWVFWDEWIQKALAWLPIPK >gi|308151753|gb|GL476269.1| GENE 14 13742 - 15208 1690 488 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 478 2 479 491 389 50.0 1e-108 MAKETNVKLVTVSVFVATFMTAIEGTIVSTAMPTIVGSLHGMEIMNWVFSIYLLTNAMLT PIYGKLADKIGRKPVFMIGIIIFILGSSLCGFAQDMLTLIIARAIQGVGAGAILPVALTI IADMYSLDKRAKILGLNSAAWGIASIFGPLAGGFIVDTVGWHWIFFINVPIGLVLLGLIS IFLVEPKRERTKMPMDILGSVTLMAVLLTLLLGFQMISDNGFTLVTFGCLSLSVLFFVAF VMIEKRAQDPVIDLHLFNQPTFVLVNLIAALISGFLMGIDVYIPMWMQGVLGKSAGIGGL VLAPMSLLWMAGSFIASSFMEKYAMKKVLTIGLSILLVGAIFLVVMPMAVPFWLFFVVSS VLGVGFGITITTTTVTAQSTVEPEKMGVATSFNTLVRTIGQTVMVSIFGVILNAGMFAKL EASALNVDADVMNQLVNPHTANLIPAALLKPLRGILYAGLHNVYLVGAGLVVVALLLNIF AKAQRAKV >gi|308151753|gb|GL476269.1| GENE 15 15378 - 16562 1819 394 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 389 5 394 400 594 77.0 1e-170 MTERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEIST TAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQDEK DDIGAGDQGLMFGFAVDETPELMPLPIALSHRLVRRLAELRKEKVLPYLRPDAKSQVTVE YDDQGQPQRVDTIVISTQHDDETTLEQIEKDIKEQVINEVIPHELLDDETKYFINPTGRF VIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGL AKKVEVQLAYAIGVAQPVSISINTFGTSALPESKLIEAVRKNFDLRPAGIIEMLDLRRPI YKQTAAYGHFGRTDIDLPWEQTDKVEALKASLAE >gi|308151753|gb|GL476269.1| GENE 16 16778 - 18655 1849 625 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 623 2 600 605 460 41.0 1e-129 MNQTANSKKKRYITGFDGIRTIAVIGVILYHLFPQVMRGGYLGVPIFFVVSGYLINDLLR QEWAENQTIDLKGFYVRRMKRLYPALIVMLLSAVSYITLFQQDLLNNIRSVVASSVFYYN NWWQIFKGFSYFDGFATQSPFVHIWSLAVEAQNYLIWPLLFILLERFVRKRGRIFSLVLI GALISVTLMAVLYVPGADPTRVYYGTDTRVFSILLGSALAYVWPSTRLKEEIPEASKKIL NGAGLSALVLLVLAFLTLSDHTNFVYYGGMFLISLAATVLVAVTAHPGADMNRWLTNPVF TWIGKRSYGIYLYQFPIMIFYEAKIKTLSDHVFLHSLVEIALILVVSELSYRFIEHPLTR LSYKDVWTQFTEFLRKPWDLREKGTMAFMTVISVIAVFGLIVAPANAKSAQQEQLEKNIA KNQQKIEERKKEVQESGTKNSSTSTESSTKPSESQDVLPAQLTPEQVKKAQNLEITTIGD SVILDGASGLQDIFPKMIIDGEVGRQLYSSISLIGELDKKKMLKDTVLVSLGTNGPFTEA QFDEFMKALGNRKVYWINVRVPTRRWQNQVNSLLSQMDKKYDNLTVIDWFNYSNAHDDWF YDDRVHPNVAGGEQYTHFIAEKILQ >gi|308151753|gb|GL476269.1| GENE 17 18856 - 20187 1565 443 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 16 442 18 447 447 331 42.0 2e-90 MKFEQRMSQQQKQVQKLAMTQQLQQSIQILQFNTEELAAFVEAKALENPLIDLQVDTQYT TDFPITSRSYTNQDEENNYMNQIPDYHLSLFESLIDQIHLNYRDTYLRTLVLFLVEYIDV NGYLKISLEEAAEKTEASAIQMLDALTLLQQLDPAGVGARNLQECLMLQTERDDTAPNLA YILLEEEFDALVSRKWGPLAKKFGIELAEIQLIFDYIQTLSPAPGNIFDATEELYIRPDL TVRIKEDRIVVISNKAGRPTLNFQENYFKRMQETDDKEVQEYIKDKKNEFEWLERAVNQR GDTILRVGQEIVRRQEAFFLEADRPLKPMTLKEIADALSIHESTVSRAVNGKYLETTFGV FELRSFFSTSILSSEEDGEDVSTTMVKKQLQKLIDQEVKSKPLSDQKLVERLKDSGMEIS RRTVAKYREALGIPSSSKRKRYE >gi|308151753|gb|GL476269.1| GENE 18 20931 - 21131 373 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 97 81.0 4e-21 MNNGTVKWFNADKGFGFITGEDGNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPRGLQA TNIVKA >gi|308151753|gb|GL476269.1| GENE 19 21365 - 21772 480 135 aa, chain - ## HITS:1 COG:no KEGG:EF0780 NR:ns ## KEGG: EF0780 # Name: not_defined # Def: MutT/NUDIX family protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 259 98.0 3e-68 MKKEFSRVLLKNQYDEILILKDRPDTWNFPGGKQELGESALECAIREMKEELAVEITELE EIFTGPLVFDSIVWQGHFYFAKQVQGKVTLNEPNKIKGVQFIKRFEEVNFSPGLAPLFDY LARSDYLKLNKTNWK >gi|308151753|gb|GL476269.1| GENE 20 21798 - 23585 1453 595 aa, chain - ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 344 583 1 240 249 270 56.0 8e-72 MSAWQTFKNGTRQFFKDILQYLWLFFTLNVLLLLVGGAFSWATSNALKTQGIPYLSFNNL NLLLEKPLALVLLILLLLLFLGAVFYQFTFLLLGIFQIRQDHRFHFKGVTKASFKVLKKQ GARSWLFFFGYFVVIVPFGNLIFQSNLLTKFVIPDFIVEFLSQRIPYLVGLLAFGLLVWY LAIRFIYTLPLMILERKKAGEAVKASWSMTNKRLWFIICNIAFVTIAVFVSTYVIYVLLY LLQLKLDTLSDTISLLGGILNLTVVQFLQFVSNAWLSVLLINFLYTQLNVLAETTTKVAF DKETKRNKLVTIGMGLGLFTIFGGYIIFNAVYLTGLLESKPLIISHRGVTNSNGVQNTIP AMERTIKFKPDYIEIDVQETKDHQFVVMHDANLQELAGVDGTPQEFTLAELTKMTVKENG QEAPIASFDDYLAKANQAKQKLLVEIKTSKQDSQGALSNFIEKYERPLIKNNHQVQSLDY NVIKAFKKAKSKVKVSFILPYNFTFPETQADLYTMEATTLNDTFILKADQQKKAVYAWTV NDSEVLSKMLFMDVAGVITDDLELVNEEVNDFEKNPSYADRILHYIFMLPSVASQ >gi|308151753|gb|GL476269.1| GENE 21 23657 - 24124 513 155 aa, chain - ## HITS:1 COG:no KEGG:EF0778 NR:ns ## KEGG: EF0778 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 169 144 98.0 9e-34 MIELILLLSVILLGLLIGNKRVDKWLFLKALLLFSVMLSVSILISVAMYLLLTIGVANVI GQRLESLFLLGIVVIISTSLLLYFLLNLTTKKIVLPIALMKIIEYYIQWVLIYVTIYQVI FDQFIVSSEVKNTLQGTIDEPVAIIIVILPSFISI >gi|308151753|gb|GL476269.1| GENE 22 24298 - 24681 393 127 aa, chain - ## HITS:1 COG:no KEGG:EF0776 NR:ns ## KEGG: EF0776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 127 204 100.0 6e-52 MNKKISFSLLILLLSLLVGFTFIPHKKELSFNEYQEKKHSGETFYVVLKKKNCSDCQDFE KLLQAPKQVYYVELTNKETMKEWSTFIRENKVLHVPSMFKIDNGHLKKIDGEGDANQLFA NYQKITK >gi|308151753|gb|GL476269.1| GENE 23 24706 - 27603 3383 965 aa, chain - ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 965 1 962 962 1532 95.0 0 MFKKATKLLSTMVIVAGTVVGNFSPTLALAEGVVKAGDTEGMTNTVKVKDDSLADCKRIL EGQAAFPVQAGETEPVDLVVVEDASGSFSDNFPHVRQAIDEVVQGLSDQDRVMLASYRGG KQFIFPDGKVKINSADYDMNVRVDTQLTHDKSQFVSGFGDVRTYGGTPTASGLKLALDTY NQTHGDLTNRKTYFLLVTDGVANTRLDGYLHKTNTNDSINEYPDPRHPFQVSVEYSNDYQ GAAAEVLALNQEITNQGYEMINAYWESVESLSSVNSYFDKYKTEVGPFVKQELQQGSSTP EDFITSQSIDDFTTQLKQIVKDRLAQSTPATASLTIANQFDIQSATATDDAGNDVPVQIN GQTISATSTEGYVGNITIHYEVKENTAIDAATLVSSGTMNQGTIAKEFPEATIPKNDNAH ACDVTPEDPTITKDIENQEHLDLTNREDSFDWHVKTAFGNETSTWQQASLVDDINQLLDI QKVVVTDENGKDVTANGTVTQENNKVTFEMNKKDDSYSYLAGHTYTMTITTKIKTDATDE ELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTVTPPAPTPEDPTITKDIEGQEHLDLTNR DQEFKWNVKTAFGNETSTWTQASMVDDINKVLDITDVKVTDENGKDVTANGKVTQENNKV TFEMNKKDDSYDYLSGHTYTMTITTKIKTDATDEELAPYIEQGGIPNQADLNFGNEGDVL HSNKPTVTPPAPTPEDPTITKDIEGQEHLDLTNRDQEFKWNVKTAFGNETSTWTQASMVD DINKVLDIADVKVTDENGKDVTANGIVTQENNKVTFTMNKKDDSYSYLAGHIYTMTITTK IKADATDEELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTVTPPAPTPEDPKKTEPKQPL KPKKPLTPTNHQAPTNPVNFGKSASKGIHLPMTNSTVNPLYMIAGLIVLIVAISFGVTKN KKRKN >gi|308151753|gb|GL476269.1| GENE 24 28068 - 28472 502 134 aa, chain + ## HITS:1 COG:no KEGG:EF0774 NR:ns ## KEGG: EF0774 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 244 99.0 1e-63 MNEWPHQLMTLLTPLFELCILGLNVFSIIVLVWGVCLAGKDFIKSERQNQSRFTLTKMNT FIKNFLGSYILLSLEILIAADIIESIVKPTFQDILKLATLVIIRTVISYFLHKEIEDTMT DMEQQEKEPDTPKN >gi|308151753|gb|GL476269.1| GENE 25 28493 - 29011 570 172 aa, chain - ## HITS:1 COG:no KEGG:EF0773 NR:ns ## KEGG: EF0773 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 308 100.0 5e-83 MFVFIAGMVGVIVGALIVTASAALHSSYKERKEVRYRELEHLVKEIESLNLLNKKVKEIL QKRELYIDRSIEYLSMDDCFISIDDFIYLESFSAQNNFYLPTYLIEEFFKKIAHRKVILT ASEVAEMGGHTYKGGRVILENFSDEILAIIEDKKRKMQRLSNEPLHYFKAIK >gi|308151753|gb|GL476269.1| GENE 26 29207 - 29800 897 197 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 196 1 196 198 316 81.0 2e-86 MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA KEYGLIDEVMENSSALN >gi|308151753|gb|GL476269.1| GENE 27 29845 - 30363 601 172 aa, chain - ## HITS:1 COG:lin1051 KEGG:ns NR:ns ## COG: lin1051 COG1651 # Protein_GI_number: 16800120 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Listeria innocua # 1 171 1 171 176 203 57.0 1e-52 MDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESKELLAQSVKSGKVE RIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN LGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEHIFDESVTEEELRGYIEK >gi|308151753|gb|GL476269.1| GENE 28 30477 - 31400 1167 307 aa, chain - ## HITS:1 COG:no KEGG:EF0769 NR:ns ## KEGG: EF0769 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 569 100.0 1e-161 MVQRLISANASEIKRMSKEELFQSIKASEGRVILSENVVVHPSVAGDITCAEMSKAYGAD MILLNVFDVNQPIVVAAYEGQYTAETCVPNDEVVHRLKELVGLPIGMNVEPVDENLDLAS TRVSIEPGRKASAATFKKANELGLDFILLTGNPGTGVTNDLIAKNVALAKKHFDGIIIAG KMHSSGVDEPVVSLKSAEQFIEAGADIVLVPAVGTVWGIDDQQVKEVVDFAHSKGKLVMS AIGTSQESAQPEVIQAIGIRNKILGVDIQHIGDANMGLVGIENIKELSDAIRGKRHTVAR MARSINR >gi|308151753|gb|GL476269.1| GENE 29 31634 - 32569 1082 311 aa, chain - ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 307 1 308 323 376 64.0 1e-104 MSFASDVKKELTGLEVHREHAKAELAALIRMNGSLSLVNQQFVLNVQTENAAIARRMYSL LKDHYHAQAELLVRKKMKLKKNNVYIVRLKQDTQKILADLDIMDGVVFNGNVSNEIMGNA QKMRSYLRGAFMASGSVNNPETSRYHLEIFSIYEEHNNDICKMLNYYDLNARTLGRRNGY ICYLKGAEKIADFLTLIGATNSMLKFEDVRIVRDMRNSVNRLVNCETANLNKTIDAASKQ IENIQFIESTVGLTSLPEKLQEIAELRLEYPEVSLKELGEMIPSGAISKSGINHRIRKIN EFAEKLREKSA >gi|308151753|gb|GL476269.1| GENE 30 32603 - 33598 1106 331 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 326 1 321 325 428 64.0 1e-120 MKTYRIRKPKIVVVGGGTGLPVILKSLRNQSVDITAVVTVADDGGSSGELRSSINNMTPP GDLRNVLVALSDMPQLYEDIFQYRFDKSDSHFANHAIGNLIIAAVSEMRGSTYEAIQLLS KMMHVDGRIYPSSERPLTLHAVFKDGSVAVGESKIALDRKTIDHVFVTNTHGEEQPRAAR KVVKAIEEADMVVLGPGSLFTSILPNLVITEIGEAIKQTAAEVVYICNIMTQKGETEHFT DADHVRVLNEHLQAQFVDTVLVNTEKVPENYMDPEIYDEYLVQVKHDFQGLREEGCRVIS TDFLELRDGGVFHDGEKVVEELFRIVFGTKY >gi|308151753|gb|GL476269.1| GENE 31 33598 - 34485 1008 295 aa, chain - ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 3 290 4 290 291 374 63.0 1e-103 MPENLQLVIITGMSGAGKTVAVQSFEDMGYFCIDNLPPSLIPKFWELIKESGKVTKIALV IDLRSRTFFREIQDMLVELENTNFIDTTILFLDATDEELVSRYKETRRAHPMAMDGLVTE GIRKERAMLEEIKADAQLVIDTTDLSPRQLRERLNKELATRETHEFRVEMVSFGFKYGLP IDADIVMDVRFLPNPHYIDELRPLTGMDQPVYDYVMGFPETDEFYTKFIDLLRTVLPGYK KEGKSSVTIAIGCTGGQHRSVALTERVGAELKEEDYHVNITHRDRLKRKETVNRS >gi|308151753|gb|GL476269.1| GENE 32 34651 - 35445 809 264 aa, chain - ## HITS:1 COG:no KEGG:EF0764 NR:ns ## KEGG: EF0764 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 317 100.0 3e-85 MKNKKITTSLLTAGMVLAIGITPFVHSNTMEAATLISQSDHEKVMSFTKKDLKEATGIQL EPATVQAVHQELKQQITWETLGYSTIDAQNIATRFTQNTYQALGILTDIANHSDLQLKVI TINNPYLATAKIGTFKWETVTPEVGGDHETADNELTTPTPTVASLQEIDVEIEYDENEIE FTYEIKSNGIIEATYEDESADLELEGKAAQDKIMTLLDGLSIKTATNEQIKEHITKKLAV NEQVKQFEFEANFTDKTEIEFVLK >gi|308151753|gb|GL476269.1| GENE 33 35617 - 38436 3115 939 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 935 3 937 943 1498 78.0 0 MANDKIVIHGARAHNLKNIDVTIPRDKMVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGHP ICPNDHIEITSQSVEQMVDKVLELPERTKIQILAPVVVKKKGQHKKVFEMIQREGYVRMR VDGETYDVSEAPELEKNKKHDIAIVIDRIVVKEGIRSRLFDSFEAALRLAEGYAIVGVIG QEEMLFSEHYACPYCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDKDLVIPDPTKT LREGAIVPWNPISSQYYPQMLEQAATSFGIDMDTPFEELPADQQEIILNGSGEKNFHFHY ENDFGGVRDVEVPFEGILKNIKRRYHETNSDFTRDQMRLYMTELTCRSCQGYRLNPQALA VKINGTHIGEVSELAIKNAVQFFEGVSLSEQETTIARPILKEVEDRLTFLKNVGLDYLTL SRAAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNT LIVVEHDEDTMMASDYLIDVGPGAGHLGGEIVAAGTPEEVAKNPHSLTGQYLSGKKVIPV PKERRKGNGKAIKVTGASENNLKNVSVEFPLGEFVAVTGVSGSGKSTLVNQILKKALAQK LNRNSNKPGKHKSITGYEAIEKIVDIDQSPIGRTPRSNPATYTSVFDDIRDLFAQTNEAK VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLEVHYKG KNISDILDMTVEDAVEFFKHIPKIHRKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS ELHKNSNGKNFYILDEPTTGLHTDDIARLLLVLERLVEAGNTVLVIEHNLDVIKSADHVI DLGPEGGDGGGTIVATGTPEEVAKVKDSYTGYYLKRVLK >gi|308151753|gb|GL476269.1| GENE 34 38554 - 40551 2274 665 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 660 662 994 77.0 0 MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQE VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKS LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIV GETEHVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIE MMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDR ARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTETVVQQIIRPT GLLDPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYL HSDIKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLV QTMGRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDL ISISKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILE LKAAK >gi|308151753|gb|GL476269.1| GENE 35 40830 - 42998 2455 722 aa, chain + ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 1 521 1 507 509 451 45.0 1e-126 MKRKHFLLSFFVMMVTLLTFISGTSAHAEGKKYTIGTDLTFTPFEFQDSKGKYIGIDVDL LDAIAKDQGFEVDLKPLGFDSAVQAIQSKQIDGMIAGMSITDERKKSFDFSDPYFDSGLQ LAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKNFDDATGLYKALENG EADAIVDDYPVLGYAVKNGQKLQLVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKDN GTYDKILNNYLATGDETNTQDAGEQMKKITPKKEKYVIASDSTFAPFEFQNAQGDYVGID VDLVKRAAELQGFTVEFKFIGFSSAVQAVESGQADGMVAGMTITDDRKKAFDFSVPYFDS GIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYSIKYLDTTDALYSAL EIGEVDAMMDDYPVIGYGVAQNQPLATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEM KRTGEYDKIIGTYVKDGNEAKEETADESTFVGFMQNNWKQLLHGLWMTILLTLISFVLAL IVGVIFGLFSVSPIKALRVLSTIYVDLIRGIPLMVLAFFIYFGLPGVLGFNIPVFIAGII TLTLNASAYISEIVRGGIKAVPVGQMEASRSLGLSYNRTMQKIILPQAIRIMIPSFINQF VISLKDTTILSAIGLIELLQTGKIIVARTLQSTMVYFVIALIYLILITSLTKLAKNLEKK VN >gi|308151753|gb|GL476269.1| GENE 36 43000 - 43737 296 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 33 6e-26 MTEKILVEHLVKKYGDNTVLNDINVSINEGDVVCVIGPSGSGKSTFLRCLNQLEEASSGD IIIDGANLTDKNTDINQVRQHIGMVFQHFNLFPHLSILENIVLAPTDLGRLSKDEAEKKA LELLERVGLADKKDAYPDSLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGDVLG VMKDLAKQGMTMVIVTHEMGFAKEVANRVMFIDGGNFLEDGSPEQVFENPQNPRTKDFLD KVLNI >gi|308151753|gb|GL476269.1| GENE 37 43785 - 43994 293 69 aa, chain - ## HITS:1 COG:no KEGG:EF0759 NR:ns ## KEGG: EF0759 # Name: not_defined # Def: SapB protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 69 171 239 239 129 100.0 6e-29 MIKESRLHEQLQASLEKGERLVELTLESEQEAVTAKISYVGKEDFWHSNLHHLLKEKGHV QSVSVTETI >gi|308151753|gb|GL476269.1| GENE 38 44148 - 44504 446 118 aa, chain - ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 11 118 1 101 232 74 37.0 4e-14 MNSLKMIELSLTDVVIRMALAVVFGALIGLERSIKRKGFGISSNAILCLASCTISILQIQ SVDILVDVVKQNSALASIISMDITRYGAQVISGVGFLGAGIIVFRERKVSGLTTAVMM >gi|308151753|gb|GL476269.1| GENE 39 44540 - 46444 2054 634 aa, chain - ## HITS:1 COG:BH0744 KEGG:ns NR:ns ## COG: BH0744 COG2217 # Protein_GI_number: 15613307 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 22 630 32 636 637 452 43.0 1e-126 MSKQTGAHTHEEKGKNVPVILFFTGLALFFIGLFLGNMLLVKNILFSLAAILAGYHIIGE GFGDTYRDTKNNRKFSPNIHLLMTLAAVGSALMGSFEESALLILIFAAAHFLEDYAQGKS QREITKLLNLNPTEARLITDDGSIQTVSVEQLKIGDRVQVLNGAQIPTDGVVIEGSTAVD ESSINGESIPKEKNSGDPVFGSTMNGSGTIVVEVTKDSSETVFAKIVQLVNQSQENQSEI ASKIKRFEPKYVTLVLAVFPLIVLGGALLFQLTWAESFYRGLVFLIAASPCALAASAVPA TLSGISNLAKQGVLFKGGSFLSNLAEVKALAFDKTGTLTKGKPEVTDYLFVDGLEDRQDE LVAVLTNMEKKSNHPLATAIVNRFEAETTALNLEVENIVGVGLVTTIVDTTFRIGKPSSF EQVPTIIEKQTTKLASEGKTVVYFAENEQVIGLVALMDVPNEEAMNAIHYFKSQNIETTM ITGDAKLTGEAVGRLVGVDQVFANVLPEEKSAIVDQLKREVGMTGMVGDGINDAPALVNA DIGVAMGDGTDIAIDVADVVVMKNDLSKLGYAHRVSKRLNKIVQQNIIFSMLVVATLIIL NFLGIANIAFSVLIHEGSTLVVIFNGLRLLVNTK >gi|308151753|gb|GL476269.1| GENE 40 46554 - 48002 1074 482 aa, chain - ## HITS:1 COG:no KEGG:EF0757 NR:ns ## KEGG: EF0757 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 872 99.0 0 MMNYEIFLNKEDQRSYSLLRHLEESPTLSGTFIALREELSMSNFLVKKTLEKLKADIDNL KLSDSLTLVVSDVDVTLEIDGNYSSKLLLTKYLTESLSFKLVLSYFRGNYSLTKFAECNH VSTSVAYSTLQRLKKALKEYQIYFSKREIVGNQKAISFFLYKLFTLSNQPISELYSVKVY NEAKRVLQSVELNYTFTTYERRNFFHYLAIMINNEGRAVEGIDTRALNTFSEELIKKSQV EWALSSKSLTYTIVFFLYLHGKLEKKYVIHEDPMIESLTRVFIGSFEKAFNCLEESTRNT LEEGLAIIHFNVIYFPINMFDDFEMDLQFFKQTYPEFYFYLIEYIRWLTAKHKKIAKANH CLFFHYLLLLINHVPVHLIAEPAKVLIDFSYGKEYNQFIKKNLSVYVNLNVEIIDPLSDT LPDVVITNLNNLYQEEQSKVMVWLDPPRSIDWVNLTQSLLTIQEEKYQQQKESTKTSGDP IE >gi|308151753|gb|GL476269.1| GENE 41 48006 - 48455 335 149 aa, chain - ## HITS:1 COG:no KEGG:EF0756 NR:ns ## KEGG: EF0756 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 149 1 149 149 215 99.0 4e-55 MDKYKHLLLWSTLLLSFFQVTNVQAAEERNPIYNPTNPTEEIYPIENTGTPEKMEETNES TITSETQAEESSEDVSKKEVTTNNPKTNEERPSSKKSQHQVFFTDELFDASHITIVPNST GGAGTEGQNTFYLNFIRELVGTAIYGRKN >gi|308151753|gb|GL476269.1| GENE 42 48657 - 49751 772 364 aa, chain - ## HITS:1 COG:no KEGG:EF0755 NR:ns ## KEGG: EF0755 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 572 99.0 1e-161 MNRKKQRFLFFPILLILLALVPSNGFASEFNFAVTPIPSEKQVDKEKTYFDLLLAPNEET ELKVNLRNDTDKEVKVGISINSAITNSNVIVEYGENKGKKDQSLAFDIKDYVQYPSSVRL KPKSEQTVSINVKMPNTPFDGVLASGITFKEETSDEGKRQDDKSQGLSIKNEYSYVVALL MQQNKKKVEPNLLLKKVSPGQINARNVILVNLQNDQKTYINQVAFSAEITKKGHEEVLYK EEKANMQIAPNTNFSVPIALKGQPLKPGDYHLSMTVVGNKDAAGSFKKSINNESISFRNQ WQFEKDFTINGKVAKELNEKDVTLKENHSNLYLMIGLLLLLIVILIITWLIWRKKKQEKN EREI >gi|308151753|gb|GL476269.1| GENE 43 49827 - 50567 891 246 aa, chain - ## HITS:1 COG:no KEGG:EF0754 NR:ns ## KEGG: EF0754 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 246 1 246 246 390 99.0 1e-107 MKKVTTVCLSTFILGSLGMTSQTFAEDGGSYTSNGIVEFTPSEEPTNPVDPTDPTNPVDP IDPTDPEGPNPGTNGPLSIDYASSLDFGVQKITSKDQTYFAATQKYKTVGATDEVKEGPN YVQVTDNRGTEAGWSLKVKQEGQFKSTSGKELTGAAITFKNGNVVTASDSGKPTGPATIT LNSDGSQSDVMSAAKGNGAGTYLFDWGTDATTAAKSIELTVPGSTTKYAEKYATKLTWTL TDAPGN >gi|308151753|gb|GL476269.1| GENE 44 50590 - 52689 1909 699 aa, chain - ## HITS:1 COG:no KEGG:EF0753 NR:ns ## KEGG: EF0753 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 699 1 699 699 1267 98.0 0 MRNKQSLVFLASSLFLLLLAPITSEAISNPSTNINEVNREIVEESANDQATSAASHSETL EQESSLGTTTTTDNHPAETDQSTATLEPSKQQKDDDNSATESAIVEPQPRMLAAPYAASL PDDPNIIPIDKVFQEPIGNATSILEGGKLLQLNPAVKSQKGAIWSKKPISLLSDFTFKSY LYLGNEYANAGDGMTFTLTNDPRMSTTPQEVIGSPGMGIGAYSTKAGQPYVRNALSIEFD TYKNTGSSNRMDREISQDKGNGHLAFVTPKANNNSYTGEHSGVTVAPTYLSNGTWRMLTV HWNAAAKALTYDLEGVGTNTYVVSDLNAQFGATTVYWGFTSSTGGKYQENALAMTQIPTN VTSQAALSVNGQEFSSAVEAVKNDQVRLRNTLNIDNDFIEDRQPQVSIDLPDELAYEENS LTIDGKKVAAKDLTQTGNHLTIALNDYLVLKKDMIIELKTTLQYNTPEKVLTMNFDYYEE GTLLQKSNNVTITIPKPTEKTVTVFYKDAEGKDIAPPKSVTGKIGAPYQEKPLDISGYVF TKDSGNAEGTMTEETKDIYFYYRLGELYFKEAPKQITFGTEKIRNQPLIKLGHPTEGLKV VDERNANNWRLQLKQTQPLTNDSIVMPDVFSFVSTAGSSQITNEAITLLESNQKGETDLT ALLDESKQQGIQINVPVAYQRVGTFKARLSWALEDVPGN >gi|308151753|gb|GL476269.1| GENE 45 52709 - 53488 942 259 aa, chain - ## HITS:1 COG:no KEGG:EF0752 NR:ns ## KEGG: EF0752 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 455 99.0 1e-127 MKKQFTGIVLCSTFAVAGWSLQAKAEEPKEYRSNGLVEFIPNVDPTEPVDPENPDPEKPV KPIDPTDPEGPNPGTQGPLSIDYASSFDFGKNRISNKDQVYFARAQQYQENQKETPNFVQ ISDNRGTNSGWSLTVTQKEQFKATKATLNSQLTGAQISLANPTVNSNAQNVEKPEATNKI ALVPGTASLVAAAKQGTGAGTWATYWGKVEVVAERDETNTVHNVNVTKDVALSVPGSTPK DAVKYQTKLLWTLTDVPGI >gi|308151753|gb|GL476269.1| GENE 46 53505 - 54236 853 243 aa, chain - ## HITS:1 COG:no KEGG:EF0751 NR:ns ## KEGG: EF0751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 423 100.0 1e-117 MKKTVLLTSATILLGVGFQAINASAAETFPKEYNTEGTITFEAGDNEITPPVDPENPDPT DPVDPIDPPGPGTGGALSIDYGSKFKFGTQKISTADQTYYAAPDEMKDGSKKPTYVQVTD KRGTLAGWKLTLSQPEQFKTATGEELVGAQLTFTKAEAASMVDEKYKPTEVSSTISLTPG VNNNLAMNAKKETGVGTWVYRFGSNEATNKEAVQLFVPGKSVKLAQQYSTKLVWALEDTP ANN >gi|308151753|gb|GL476269.1| GENE 47 54236 - 54574 302 112 aa, chain - ## HITS:1 COG:no KEGG:EF0750 NR:ns ## KEGG: EF0750 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 192 96.0 4e-48 MKIIKRFSLVCLGLLIIGLQTKSVMAEENNYESNGQASFYGTYVYENEKESNDIAYTQQS EEQGRNNLTASGQAVLPKTGESENPLYSLIGVSLLGVVIYLINKMKREKELI >gi|308151753|gb|GL476269.1| GENE 48 54790 - 55740 1349 316 aa, chain - ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 318 494 75.0 1e-140 MKYQVLLYYKYTTIEDPEAFAKEHLAFCKSLNLKGRILVATEGINGTLSGTVEETEKYME AMQADERFKDTFFKIDPAEEMAFRKMFVRPRSELVALNLEEDVDPLETTGKYLEPAEFKE ALLDEDTVVIDARNDYEYDLGHFRGAVRPDIRSFRELPQWIRENKEQFMDKKIVTYCTGG IRCEKFSGWLLKEGFEDVAQLHGGIANYGKNPETRGELWDGKMYVFDDRISVEINHVDKK VIGKDWFDGTPCERYINCANPECNRQILTSEENEHKHLGGCSLECSQHPANRYVKKYNLT EAEVAERLALLEAVEV Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:01:05 2011 Seq name: gi|308151752|gb|GL476270.1| Enterococcus faecalis TX4000 genomic scaffold Scfld41, whole genome shotgun sequence Length of sequence - 11400 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 5, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 170 - 221 14.0 1 1 Op 1 . - CDS 226 - 3018 2810 ## COG1511 Predicted membrane protein 2 1 Op 2 . - CDS 3052 - 3282 409 ## EF0857 hypothetical protein 3 1 Op 3 . - CDS 3361 - 4113 863 ## COG2365 Protein tyrosine/serine phosphatase - Prom 4186 - 4245 7.8 + Prom 4125 - 4184 10.1 4 2 Op 1 . + CDS 4287 - 5507 976 ## EF0855 hypothetical protein 5 2 Op 2 . + CDS 5549 - 5764 60 ## EF0855 hypothetical protein - Term 5768 - 5815 -1.0 6 3 Tu 1 . - CDS 5819 - 6454 426 ## COG0681 Signal peptidase I - Prom 6552 - 6611 2.1 7 4 Op 1 . - CDS 6626 - 6928 144 ## EF0853 hypothetical protein 8 4 Op 2 . - CDS 6933 - 8228 1356 ## EF0852 hypothetical protein 9 4 Op 3 . - CDS 8253 - 8948 633 ## EF0851 hypothetical protein - Prom 9086 - 9145 11.3 - Term 9121 - 9180 12.4 10 5 Op 1 . - CDS 9267 - 9644 462 ## COG2337 Growth inhibitor 11 5 Op 2 5/0.000 - CDS 9660 - 10775 1270 ## COG0787 Alanine racemase 12 5 Op 3 . - CDS 10805 - 11158 425 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 11330 - 11389 12.9 Predicted protein(s) >gi|308151752|gb|GL476270.1| GENE 1 226 - 3018 2810 930 aa, chain - ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 30 930 1 901 901 1284 71.0 0 MCRNIQAFVCYSLVFYAKVIQAQKKAGDFMKHIKNTWELFILDWKRIFKNPVATFLIVAL MIIPSLYAWFNIKALWDPYSNTGELPIAVYSDDQTATFQDKSVNIGDEVLKNLKKNKQLG WRFVDSKKELDKGVQSGKYFAGIYLPKDFSKDLLSFTSGDINKPKIEYSINEKINAIAPK ITSKGASSIQSQISEEFIKTASSTLIKTFNDIGYDIDKNMVSIQKVKSMILDTDANIGTI DTYAKQVTDLHGKMPELKEKLAKANDAMKYLPEVDALGEKIVELNGKMPSIKEQASVILT LQEKIPEIQNAGRQIAMIDEDFASVEQTMSEGIQEAKQGLEIIQQVQTALPDIRKLGDQA NDLGNVTLDGANKLQEALPSITNSVEVTLKSIQQVATTTTSVVATIRQALDDGQLTPEEK QHINEVVQDFTTNIQRQQQAINDIIAFMKQLQENAGNHDLDGAIAQLSHVNDLLTDFSNR LNQLNALVQAGDISGVQNYLNEIDEMATNISSIVGSVDVNGISNTVSTILNKLTSTIQNA QGQLNKAQQIDFEGLLSSTSQTVTNAISLLEKYQAEMPAIKQEIHDANTMLNGNMETIVN GINRGADLYKNDLPVIQDKVSKAAAFMQNDYPGIRKDLTNTLKTVNEKMPDVEAALDKAN ELIINDWPNIKTGLHKAANAIRKGEKEVDLGEILKLLKLDANKESDFFTQPVEVKEHAVY PIANNGSASTPFYTALCLWVGAVLFSSVATTDVYLEGKDKKRFSKREQFSARMFTFIVMG IGQALIVTLGNYFALGVDVRNPAYSVWFAVLIAITFMIMVYVLVALFGNVGKGIAIIILV LSISGGGGNYPIQVSGKFFQMINPFLPFTHAVNLLRESAGGIYWPNAWFAIWIMVGISVV FSIGGAILYPHLEHRSKKFAALAQKSHLFH >gi|308151752|gb|GL476270.1| GENE 2 3052 - 3282 409 76 aa, chain - ## HITS:1 COG:no KEGG:EF0857 NR:ns ## KEGG: EF0857 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 97 100.0 1e-19 MKEGQEQFLTFILDRTKEDKKEKMQALLAEMFERQQTGKLDKMYLMTKAPKLLAYLKPEA IDEVKQVVSEFSKNMK >gi|308151752|gb|GL476270.1| GENE 3 3361 - 4113 863 250 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 247 48 296 298 156 32.0 4e-38 MNSVVNFRDIGGFPTQQGTVVKTGHFFRSGELVNVAQEDQQMLVENYQIKRIYDFRSAAE TQERPDDSIQGTNYLHIDILADIQAQTASLEGMLKTVGSPDEAMDMAYKEMVLSNSGRKG YQTFFENFLSYPQEAILFHCFAGKDRTGIGAALILSALGVEHSYILEDYLKTNEQRKTAN EQIIAQYQANGTPPAEIQQLETLLYVKKEYLATALQAIEKEFGSVEGYLKEGLGLPLSAK KDMLSLYTKS >gi|308151752|gb|GL476270.1| GENE 4 4287 - 5507 976 406 aa, chain + ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 406 1 406 492 702 99.0 0 MLKRDFLEKPYDYMNDILLFLYNNKGRATRNELVDFFNISLPTLNEYLSFLEQFLKEEQL QENLTLTVLGDTLYLNKAPTFSMKAMIMLFLDKSIKFHMVQQLFHKNEINGGYFQQNYAI SSTTYYRKIVELNDLLNEFNLRIKRGKLVGEEKQIRFFFFNFFWFIFEEKTDLEKELANQ YLGLIEILQEIPRITFDHTEILQIKLWMKISFRRMVLEPLPTISPHDVQLDRPLFEEINL SIHTYMKRIDRPYTINEAYMFYDFFCSMHNYSANAAFAFRLAKQQRIEKTYLNEMNRVIL TYLKARGYLSHYVLPIRLLYIENLLFQLHAQLYYFSGFILPFDYWTIQSLLKVVRHPFSE SEVYELVEIATTNFATKATASKYQNQFTEINYTLILNHIAELNEKK >gi|308151752|gb|GL476270.1| GENE 5 5549 - 5764 60 71 aa, chain + ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 71 422 492 492 127 98.0 1e-28 MVAQKIQQSIAGKYPLKIEPYNAENHYDLLLMNTNNEQLVAQYDHYYIFSDISNRYDLQS IEKIIQLLLGK >gi|308151752|gb|GL476270.1| GENE 6 5819 - 6454 426 211 aa, chain - ## HITS:1 COG:lin1309 KEGG:ns NR:ns ## COG: lin1309 COG0681 # Protein_GI_number: 16800377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 24 198 7 185 189 92 31.0 5e-19 MEYLLEQTDNHQSIRGPKRKMTAEEIKKKRQAYQKKQRVQVVKFFMPAILFAIFVFFFVL KTSSYPIAGQSMKPTLNAGERVLVQRTKQVARYDVIAFKAPLASKGTYVKRIIGVPGDRI WVNEGKLYLSEEPIASDNEALPENASRFDLSEEAAAQLRLFQKIPAGHYFVLGDNRTHSS DSRTFGFVEIQAIEGIVVFKMAPFKEIGKVK >gi|308151752|gb|GL476270.1| GENE 7 6626 - 6928 144 100 aa, chain - ## HITS:1 COG:no KEGG:EF0853 NR:ns ## KEGG: EF0853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 9 108 108 156 100.0 3e-37 MVSKKLTGARKLHCLGVLFLAVTLSSSAERLQAAAVSKEEQSLRQPLIRKNIVTEKSEYL VEANQSIWELAQDAQKPLNQFMKENQLRSSYIKKGTQLVK >gi|308151752|gb|GL476270.1| GENE 8 6933 - 8228 1356 431 aa, chain - ## HITS:1 COG:no KEGG:EF0852 NR:ns ## KEGG: EF0852 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 431 1 431 431 400 98.0 1e-110 MTKRRLIKKIKDISDDTLEKEVFFQPGFEPEKIISGIKPEQQEKEMATLRERLAYYQKKE TAFKKLQEENEQLKNQQETEKQALEEKNQALLETLNQKEHEIFELEEQLETNSETTTEAT TLQTNLQNAEKQLTTVHNQMERLESELTQQVAELEKESAEQQQHIQILHNQLAEEKGKLE KKGDITGMEKQVETLTTELEESTTTQQALQEQIEKLTVQLQKVEAEKQTLQEAALQEVIV KQRMEELKNELQNSLQQKNEAEVKLGRLQGVNDKHLAEKQVYEGELAALRKEVEAKEDSL EQVQKELKTLQAVSKNIEPSSEQLTELLRAKQQINDLLMKNQQLQEEALKSQQEIGEVMV SAKKEANRIVNEAKVEAKHLINSAELEMLNIGNRAKSISNEVEASKVEVLEIYRELEERL TKLTRLEQDNY >gi|308151752|gb|GL476270.1| GENE 9 8253 - 8948 633 231 aa, chain - ## HITS:1 COG:no KEGG:EF0851 NR:ns ## KEGG: EF0851 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 378 99.0 1e-103 MMIVVLLMSSCLFLFVSYQLYLRLLVEKLDSEDRTLKRKINFYKYQKNSRLMIYLLFSVC LLSVLLLGIVYTYYQLNQRNIRMEQRIERLAQGQVTQGDKIKKQAIKKTALNQFTWKQAV SAESAAVLTNYELQLAREWRPYLGETSITMIRSEKTQTLTLSVFSVGLSYHEFQTGQDNI VALIAALNSVKEITMIDFNFTYRDQEQTLVKSIDTYARETLETNLEPVVIS >gi|308151752|gb|GL476270.1| GENE 10 9267 - 9644 462 125 aa, chain - ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 1 112 2 113 116 154 69.0 3e-38 MVKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFSPTIIVAAITAKMAKPKLPTHIG INSDETGIEKDSVILLEQIRTIDKGRLKEKVCHLRLDIMEEVDRALGISVGLSSDSAPAK ANSAT >gi|308151752|gb|GL476270.1| GENE 11 9660 - 10775 1270 371 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 366 368 363 48.0 1e-100 MVVGWHRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGA TGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLT PESNTPLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSY FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPS YALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVSIGYADGWLRHLQGFTVL VNGKRCEIVGRVCMDQCMIRLAEEVPVGSVVTLVGKDGNEENTLQMVAEKLETIHYEVAC TFSQRIPREYN >gi|308151752|gb|GL476270.1| GENE 12 10805 - 11158 425 117 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 115 1 115 120 119 51.0 2e-27 MIKGIGIDAVELSRIKPIVEKQGSFIQRVLTPNELTLFEKLSTKRQIEFLAGRFACKEAF SKAWGTGIGKVGLQDIEVLTEKTGAPYVANSPHNGKVFVSITHTDTMAIAQIVLESE Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:01:30 2011 Seq name: gi|308151751|gb|GL476271.1| Enterococcus faecalis TX4000 genomic scaffold Scfld42, whole genome shotgun sequence Length of sequence - 873 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 10 - 873 178 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|308151751|gb|GL476271.1| GENE 1 10 - 873 178 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 275 39 315 317 73 27 7e-14 RAIQTIYNVVNKFKQGKTALDYWHQYKENKKKCGRKVIQLPAHEVDYIKEKVTLGWTPDV IIGRKERPVSCGMRTLYRLFSKGIFDIDTLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDN YPDFNSEFGHLEGDTIVGIHHKSAVITLVERLSKVIITIKPNGRKALDIETALNQWFSRF PKNFFKSITFDCGKEFSNWKAISNQHDIDIYFADPGTPSQRPLNENSNGILRRNGLPKSM DFREVNQTFISSVSNQRNHIPRKSLNYRTPIEIFLSYVQEAFYSNLI Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:02:26 2011 Seq name: gi|308151750|gb|GL476272.1| Enterococcus faecalis TX4000 genomic scaffold Scfld48, whole genome shotgun sequence Length of sequence - 184184 bp Number of predicted genes - 181, with homology - 174 Number of transcription units - 84, operones - 50 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 4.7 1 1 Tu 1 . + CDS 102 - 2108 1857 ## COG3158 K+ transporter + Term 2166 - 2219 1.3 - Term 2117 - 2165 1.1 2 2 Tu 1 . - CDS 2178 - 2930 595 ## EF0873 Cro/CI family transcriptional regulator - Prom 2951 - 3010 6.7 + Prom 2878 - 2937 7.6 3 3 Tu 1 . + CDS 3041 - 5146 2292 ## COG2217 Cation transport ATPase + Term 5160 - 5208 10.2 + Prom 5188 - 5247 4.6 4 4 Op 1 . + CDS 5270 - 6694 571 ## EF0876 hypothetical protein 5 4 Op 2 . + CDS 6763 - 7674 1105 ## COG4989 Predicted oxidoreductase + Term 7724 - 7777 11.6 + Prom 7771 - 7830 7.5 6 5 Op 1 4/0.042 + CDS 7862 - 10510 3224 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 10553 - 10598 4.1 7 5 Op 2 4/0.042 + CDS 10610 - 11452 964 ## COG0266 Formamidopyrimidine-DNA glycosylase 8 5 Op 3 1/0.042 + CDS 11449 - 12048 707 ## COG0237 Dephospho-CoA kinase + Prom 12134 - 12193 5.7 9 6 Op 1 6/0.042 + CDS 12228 - 12710 549 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 10 6 Op 2 8/0.042 + CDS 12726 - 14135 1666 ## COG3611 Replication initiation/membrane attachment protein 11 6 Op 3 . + CDS 14135 - 15064 1044 ## COG1484 DNA replication protein + Prom 15102 - 15161 4.8 12 7 Op 1 . + CDS 15251 - 15319 106 ## 13 7 Op 2 . + CDS 15389 - 16354 857 ## EF0884 hypothetical protein 14 7 Op 3 . + CDS 16368 - 17888 1076 ## EF0885 hypothetical protein 15 7 Op 4 2/0.042 + CDS 17878 - 19461 1447 ## COG5298 Uncharacterized protein conserved in bacteria 16 7 Op 5 . + CDS 19458 - 20720 1141 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 17 7 Op 6 . + CDS 20735 - 20977 254 ## EF0888 hypothetical protein 18 7 Op 7 . + CDS 21005 - 22801 1603 ## EF0888 hypothetical protein 19 7 Op 8 . + CDS 22803 - 23651 1056 ## COG2199 FOG: GGDEF domain 20 7 Op 9 . + CDS 23667 - 23978 401 ## EF0890 hypothetical protein + Term 23982 - 24034 15.0 - Term 23970 - 24020 15.6 21 8 Op 1 1/0.042 - CDS 24026 - 25180 1285 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 22 8 Op 2 16/0.000 - CDS 25196 - 25918 633 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 23 8 Op 3 . - CDS 25911 - 27374 1704 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 27456 - 27515 8.9 + Prom 27347 - 27406 7.9 24 9 Tu 1 . + CDS 27564 - 28652 1205 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 28661 - 28711 2.3 + Prom 28720 - 28779 6.3 25 10 Op 1 15/0.000 + CDS 28811 - 29956 1348 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Prom 29959 - 30018 3.7 26 10 Op 2 . + CDS 30038 - 30415 588 ## COG1862 Preprotein translocase subunit YajC + Term 30555 - 30609 2.1 + Prom 30585 - 30644 7.1 27 11 Op 1 . + CDS 30695 - 30982 283 ## EF0899 hypothetical protein 28 11 Op 2 . + CDS 31005 - 31079 61 ## 29 11 Op 3 . + CDS 31138 - 33735 2993 ## COG1454 Alcohol dehydrogenase, class IV + Term 33747 - 33795 14.7 - Term 33739 - 33778 9.3 30 12 Op 1 3/0.042 - CDS 33780 - 34823 1035 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 31 12 Op 2 5/0.042 - CDS 34807 - 35913 1201 ## COG1577 Mevalonate kinase 32 12 Op 3 5/0.042 - CDS 35916 - 36911 1165 ## COG3407 Mevalonate pyrophosphate decarboxylase 33 12 Op 4 . - CDS 36911 - 37855 970 ## COG1577 Mevalonate kinase - Prom 37998 - 38057 5.7 - Term 37954 - 37988 -0.3 34 13 Op 1 . - CDS 38125 - 38760 463 ## COG1357 Uncharacterized low-complexity proteins 35 13 Op 2 . - CDS 38757 - 39830 1062 ## COG1289 Predicted membrane protein - Prom 39936 - 39995 7.5 + Prom 39974 - 40033 9.4 36 14 Tu 1 . + CDS 40074 - 41744 2010 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 41775 - 41819 1.3 - Term 41761 - 41809 3.0 37 15 Tu 1 . - CDS 41823 - 42173 328 ## EF0908 hypothetical protein - Prom 42206 - 42265 6.1 + Prom 42100 - 42159 4.0 38 16 Op 1 49/0.000 + CDS 42264 - 43205 244 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 39 16 Op 2 44/0.000 + CDS 43205 - 44257 1127 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 40 16 Op 3 . + CDS 44273 - 44449 214 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 41 16 Op 4 44/0.000 + CDS 44395 - 45327 538 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 42 16 Op 5 . + CDS 45327 - 46283 1271 ## COG4608 ABC-type oligopeptide transport system, ATPase component 43 16 Op 6 . + CDS 46324 - 47394 761 ## COG0675 Transposase and inactivated derivatives + Term 47615 - 47648 0.8 + Prom 47542 - 47601 10.2 44 17 Op 1 36/0.000 + CDS 47814 - 48314 426 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 + Term 48365 - 48398 -0.9 + Prom 48335 - 48394 1.6 45 17 Op 2 46/0.000 + CDS 48428 - 48628 340 ## PROTEIN SUPPORTED gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 46 17 Op 3 . + CDS 48689 - 49048 595 ## PROTEIN SUPPORTED gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 + Term 49066 - 49101 7.1 - Term 49013 - 49066 3.2 47 18 Tu 1 . - CDS 49095 - 49445 613 ## PROTEIN SUPPORTED gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 - Prom 49479 - 49538 2.8 + Prom 49457 - 49516 4.1 48 19 Tu 1 . + CDS 49543 - 49902 537 ## COG3759 Predicted membrane protein + Term 49922 - 49979 4.8 + Prom 49949 - 50008 9.2 49 20 Op 1 . + CDS 50030 - 50464 632 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 50 20 Op 2 . + CDS 50482 - 50997 181 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase - Term 50761 - 50810 2.2 51 21 Tu 1 . - CDS 51013 - 52188 1122 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 52334 - 52393 3.2 - Term 52324 - 52377 8.4 52 22 Tu 1 . - CDS 52418 - 53446 959 ## COG2855 Predicted membrane protein - Prom 53472 - 53531 6.8 + Prom 53471 - 53530 8.2 53 23 Op 1 2/0.042 + CDS 53553 - 54389 737 ## COG0583 Transcriptional regulator 54 23 Op 2 . + CDS 54454 - 55326 826 ## COG3865 Uncharacterized protein conserved in bacteria + Prom 55490 - 55549 8.6 55 24 Op 1 . + CDS 55598 - 55822 307 ## EF0925 hypothetical protein + Prom 55824 - 55883 3.0 56 24 Op 2 40/0.000 + CDS 55911 - 56585 835 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 57 24 Op 3 . + CDS 56599 - 57624 900 ## COG0642 Signal transduction histidine kinase + Term 57631 - 57674 0.5 + Prom 57643 - 57702 7.7 58 25 Op 1 . + CDS 57772 - 58635 1095 ## COG4975 Putative glucose uptake permease 59 25 Op 2 2/0.042 + CDS 58676 - 60067 1538 ## COG0531 Amino acid transporters + Term 60076 - 60136 13.2 + Prom 60147 - 60206 5.2 60 26 Op 1 . + CDS 60255 - 62264 2607 ## COG0143 Methionyl-tRNA synthetase + Term 62273 - 62330 15.1 + Prom 62278 - 62337 5.1 61 26 Op 2 . + CDS 62364 - 62639 99 ## EF0931 hypothetical protein + Term 62650 - 62705 13.3 - Term 62634 - 62695 12.4 62 27 Op 1 . - CDS 62698 - 63303 511 ## EF0932 hypothetical protein - Prom 63347 - 63406 3.6 63 27 Op 2 . - CDS 63424 - 65622 2192 ## COG3973 Superfamily I DNA and RNA helicases - Prom 65648 - 65707 5.0 + Prom 65623 - 65682 4.3 64 28 Op 1 3/0.042 + CDS 65781 - 66551 1081 ## COG0084 Mg-dependent DNase 65 28 Op 2 7/0.042 + CDS 66560 - 67132 870 ## COG1658 Small primase-like proteins (Toprim domain) 66 28 Op 3 . + CDS 67151 - 68038 972 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 68043 - 68092 13.1 + Prom 68067 - 68126 5.0 67 29 Tu 1 . + CDS 68166 - 68783 797 ## EF0937 hypothetical protein + Term 68794 - 68839 14.0 - Term 68782 - 68826 14.6 68 30 Tu 1 . - CDS 68834 - 69937 1510 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 69969 - 70028 6.1 + Prom 69851 - 69910 7.6 69 31 Op 1 . + CDS 70123 - 70545 537 ## COG1803 Methylglyoxal synthase + Term 70694 - 70728 0.4 + Prom 70559 - 70618 6.8 70 31 Op 2 . + CDS 70819 - 71358 646 ## EF0940 hypothetical protein + Term 71373 - 71417 7.6 - Term 71361 - 71405 7.6 71 32 Op 1 35/0.000 - CDS 71410 - 73176 212 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 72 32 Op 2 . - CDS 73166 - 74893 183 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 75033 - 75092 9.2 + Prom 74929 - 74988 3.6 73 33 Tu 1 . + CDS 75019 - 75786 507 ## COG4905 Predicted membrane protein + Prom 75951 - 76010 7.0 74 34 Op 1 . + CDS 76039 - 77256 1394 ## COG3584 Uncharacterized protein conserved in bacteria + Prom 77258 - 77317 3.5 75 34 Op 2 . + CDS 77353 - 77916 919 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 77920 - 77966 12.3 - Term 77900 - 77961 19.3 76 35 Op 1 . - CDS 77962 - 78486 453 ## COG4894 Uncharacterized conserved protein 77 35 Op 2 . - CDS 78538 - 79407 1016 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 79593 - 79652 6.4 + Prom 79462 - 79521 3.8 78 36 Tu 1 . + CDS 79541 - 80221 809 ## COG0692 Uracil DNA glycosylase + Prom 80291 - 80350 5.1 79 37 Tu 1 . + CDS 80377 - 81360 1272 ## COG0280 Phosphotransacetylase + Term 81396 - 81444 5.5 + Prom 81428 - 81487 8.5 80 38 Op 1 3/0.042 + CDS 81518 - 81997 623 ## COG0802 Predicted ATPase or kinase 81 38 Op 2 . + CDS 81990 - 82511 216 ## PROTEIN SUPPORTED gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase + Term 82545 - 82603 11.3 + Prom 82574 - 82633 12.4 82 39 Tu 1 . + CDS 82681 - 82890 311 ## EF0953 hypothetical protein + Term 82923 - 82975 16.7 - Term 82915 - 82959 12.4 83 40 Op 1 1/0.042 - CDS 82964 - 83974 1022 ## COG1609 Transcriptional regulators 84 40 Op 2 . - CDS 83998 - 85005 329 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 85 40 Op 3 11/0.042 - CDS 84995 - 85663 710 ## COG0637 Predicted phosphatase/phosphohexomutase 86 40 Op 4 . - CDS 85656 - 87950 2277 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 87978 - 88037 7.8 + Prom 88054 - 88113 5.4 87 41 Op 1 1/0.042 + CDS 88231 - 90399 2729 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 88 41 Op 2 . + CDS 90465 - 91289 835 ## COG3568 Metal-dependent hydrolase + Term 91290 - 91331 10.6 - Term 91275 - 91322 14.5 89 42 Tu 1 . - CDS 91349 - 92164 1040 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 92212 - 92271 5.9 90 43 Op 1 . + CDS 92291 - 93253 617 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 91 43 Op 2 . + CDS 93234 - 93533 344 ## EF0963 hypothetical protein 92 43 Op 3 . + CDS 93550 - 93840 348 ## COG1694 Predicted pyrophosphatase + Term 93873 - 93931 5.0 93 44 Op 1 . - CDS 93995 - 94315 57 ## EF0965 hypothetical protein 94 44 Op 2 . - CDS 94312 - 94707 216 ## EF0965 hypothetical protein 95 44 Op 3 . - CDS 94712 - 95344 489 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 96 44 Op 4 . - CDS 95355 - 95504 63 ## gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein - Prom 95655 - 95714 11.5 + Prom 95768 - 95827 4.9 97 45 Tu 1 . + CDS 95852 - 96628 708 ## COG0789 Predicted transcriptional regulators + Term 96665 - 96718 10.7 - TRNA 97045 - 97118 76.2 # Arg TCT 0 0 98 46 Op 1 14/0.000 + CDS 97386 - 97694 518 ## PROTEIN SUPPORTED gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 99 46 Op 2 14/0.000 + CDS 97727 - 98071 563 ## PROTEIN SUPPORTED gi|229546816|ref|ZP_04435541.1| possible ribosomal protein 100 46 Op 3 . + CDS 98084 - 98371 485 ## PROTEIN SUPPORTED gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 + Term 98374 - 98423 7.3 + Prom 98520 - 98579 8.1 101 47 Tu 1 . + CDS 98610 - 99023 496 ## COG3223 Predicted membrane protein + Term 99039 - 99092 7.2 - Term 99026 - 99079 4.2 102 48 Tu 1 . - CDS 99094 - 99909 737 ## COG1408 Predicted phosphohydrolases - Prom 100074 - 100133 5.8 + Prom 99860 - 99919 7.2 103 49 Op 1 1/0.042 + CDS 100081 - 101145 1574 ## COG0006 Xaa-Pro aminopeptidase 104 49 Op 2 . + CDS 101159 - 101479 436 ## COG1694 Predicted pyrophosphatase + Term 101491 - 101535 5.1 + Prom 101649 - 101708 4.2 105 50 Op 1 10/0.042 + CDS 101812 - 102243 762 ## COG1302 Uncharacterized protein conserved in bacteria 106 50 Op 2 4/0.042 + CDS 102236 - 102688 599 ## COG0781 Transcription termination factor + Prom 102695 - 102754 6.0 107 51 Op 1 7/0.042 + CDS 102792 - 103637 1130 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 108 51 Op 2 . + CDS 103647 - 104993 1505 ## COG1570 Exonuclease VII, large subunit 109 51 Op 3 . + CDS 104995 - 105225 466 ## EF0980 exodeoxyribonuclease VII, small subunit 110 51 Op 4 3/0.042 + CDS 105225 - 106106 1215 ## COG0142 Geranylgeranyl pyrophosphate synthase 111 51 Op 5 6/0.042 + CDS 106120 - 106935 869 ## COG1189 Predicted rRNA methylase + Prom 106966 - 107025 10.9 112 52 Op 1 8/0.042 + CDS 107074 - 107523 500 ## COG1438 Arginine repressor 113 52 Op 2 . + CDS 107541 - 109214 1997 ## COG0497 ATPase involved in DNA repair + Term 109232 - 109289 18.1 - Term 109227 - 109268 7.0 114 53 Op 1 . - CDS 109305 - 109415 190 ## 115 53 Op 2 . - CDS 109483 - 110439 871 ## COG0598 Mg2+ and Co2+ transporters - Prom 110471 - 110530 7.5 116 54 Op 1 . + CDS 110714 - 111085 144 ## EF0987 putative lipoprotein 117 54 Op 2 . + CDS 111117 - 111212 59 ## + Prom 111236 - 111295 6.1 118 55 Op 1 29/0.000 + CDS 111323 - 111805 532 ## COG2001 Uncharacterized protein conserved in bacteria 119 55 Op 2 . + CDS 111820 - 112776 1023 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 120 55 Op 3 . + CDS 112793 - 113200 513 ## EF0990 cell division protein 121 55 Op 4 4/0.042 + CDS 113200 - 115428 2532 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 122 55 Op 5 28/0.000 + CDS 115456 - 116421 1030 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 123 55 Op 6 4/0.042 + CDS 116444 - 117814 1324 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 124 55 Op 7 3/0.042 + CDS 117819 - 118910 1272 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 125 55 Op 8 25/0.000 + CDS 118919 - 120043 995 ## COG1589 Cell division septal protein + Term 120159 - 120196 0.1 + Prom 120072 - 120131 5.7 126 55 Op 9 35/0.000 + CDS 120217 - 121539 1575 ## COG0849 Actin-like ATPase involved in cell division 127 55 Op 10 4/0.042 + CDS 121566 - 122798 1630 ## COG0206 Cell division GTPase 128 55 Op 11 14/0.000 + CDS 122815 - 123492 574 ## COG0325 Predicted enzyme with a TIM-barrel fold 129 55 Op 12 . + CDS 123506 - 124150 694 ## COG1799 Uncharacterized protein conserved in bacteria + Term 124245 - 124279 -0.7 + Prom 124158 - 124217 3.3 130 56 Op 1 . + CDS 124365 - 124436 128 ## 131 56 Op 2 . + CDS 124463 - 125245 1342 ## PROTEIN SUPPORTED gi|29375583|ref|NP_814737.1| S4 domain-containing protein 132 56 Op 3 . + CDS 125256 - 125345 59 ## 133 56 Op 4 6/0.042 + CDS 125397 - 126098 951 ## COG3599 Cell division initiation protein + Term 126291 - 126333 9.0 + Prom 126310 - 126369 4.8 134 57 Tu 1 . + CDS 126409 - 129189 3391 ## COG0060 Isoleucyl-tRNA synthetase + Term 129194 - 129248 11.1 - Term 129181 - 129236 9.1 135 58 Op 1 . - CDS 129241 - 130764 1776 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 136 58 Op 2 . - CDS 130764 - 131432 880 ## COG1321 Mn-dependent transcriptional regulator - Prom 131459 - 131518 5.2 - Term 131544 - 131603 13.3 137 59 Tu 1 . - CDS 131604 - 131972 302 ## EF1006 hypothetical protein - Prom 132014 - 132073 4.0 + Prom 132071 - 132130 8.1 138 60 Tu 1 . + CDS 132171 - 132902 682 ## COG1489 DNA-binding protein, stimulates sugar fermentation + Term 132941 - 132975 -0.7 + Prom 132917 - 132976 6.0 139 61 Op 1 1/0.042 + CDS 133008 - 134006 1329 ## COG0673 Predicted dehydrogenases and related proteins 140 61 Op 2 1/0.042 + CDS 134033 - 135334 1353 ## COG0513 Superfamily II DNA and RNA helicases 141 61 Op 3 1/0.042 + CDS 135379 - 138084 2804 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 138097 - 138146 5.4 + Prom 138137 - 138196 5.5 142 62 Tu 1 10/0.042 + CDS 138313 - 138630 492 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Prom 138690 - 138749 6.3 143 63 Op 1 . + CDS 138772 - 140235 1775 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 144 63 Op 2 . + CDS 140279 - 140497 389 ## EF1014 hypothetical protein 145 63 Op 3 . + CDS 140517 - 140711 196 ## EF1015 hypothetical protein 146 63 Op 4 . + CDS 140711 - 141121 361 ## EF1016 hypothetical protein + Term 141124 - 141157 -0.2 + Prom 141203 - 141262 7.0 147 64 Op 1 8/0.042 + CDS 141396 - 141722 471 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 148 64 Op 2 13/0.042 + CDS 141745 - 142065 458 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 149 64 Op 3 8/0.042 + CDS 142131 - 143408 1635 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 143415 - 143470 10.5 + Prom 143413 - 143472 3.1 150 65 Op 1 . + CDS 143492 - 144886 1968 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 151 65 Op 2 . + CDS 144944 - 146137 1273 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Prom 146139 - 146198 6.2 152 65 Op 3 . + CDS 146220 - 146339 180 ## + Term 146366 - 146423 17.0 + TRNA 146458 - 146531 75.1 # Arg CCT 0 0 + Prom 146456 - 146515 76.3 153 66 Tu 1 . + CDS 146565 - 146897 560 ## PROTEIN SUPPORTED gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 + Term 146928 - 146982 17.1 - Term 146914 - 146968 18.5 154 67 Tu 1 . - CDS 147011 - 149656 2654 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 149692 - 149751 7.2 + Prom 149727 - 149786 10.8 155 68 Op 1 4/0.042 + CDS 149826 - 150455 756 ## COG0517 FOG: CBS domain 156 68 Op 2 . + CDS 150468 - 151280 992 ## COG1806 Uncharacterized protein conserved in bacteria + Term 151284 - 151336 11.0 - Term 151265 - 151330 24.3 157 69 Op 1 . - CDS 151351 - 153882 2569 ## COG2898 Uncharacterized conserved protein 158 69 Op 2 . - CDS 153879 - 154613 591 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 154650 - 154709 8.0 + Prom 154587 - 154646 6.1 159 70 Op 1 . + CDS 154790 - 155374 502 ## EF1029 hypothetical protein 160 70 Op 2 . + CDS 155397 - 156452 1045 ## EF1030 endonuclease/exonuclease/phosphatase family protein 161 70 Op 3 . + CDS 156469 - 157125 498 ## COG0775 Nucleoside phosphorylase + Term 157219 - 157273 -0.6 - Term 157123 - 157173 15.1 162 71 Tu 1 . - CDS 157229 - 159466 1456 ## COG0178 Excinuclease ATPase subunit - Prom 159486 - 159545 7.3 + Prom 159437 - 159496 6.5 163 72 Tu 1 . + CDS 159628 - 161979 2644 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases + Term 161988 - 162040 15.0 + Prom 161991 - 162050 6.6 164 73 Op 1 . + CDS 162074 - 163003 881 ## COG3173 Predicted aminoglycoside phosphotransferase 165 73 Op 2 . + CDS 163046 - 163699 758 ## EF1035 putative lipoprotein + Prom 163713 - 163772 3.4 166 74 Tu 1 . + CDS 163818 - 164219 557 ## COG0105 Nucleoside diphosphate kinase + Term 164225 - 164282 13.5 + Prom 164234 - 164293 9.8 167 75 Op 1 . + CDS 164379 - 165989 1586 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 165995 - 166039 9.1 + Prom 166022 - 166081 3.4 168 75 Op 2 . + CDS 166132 - 167217 960 ## EF1038 putative lipoprotein + Term 167229 - 167273 15.5 - Term 167210 - 167266 19.1 169 76 Tu 1 . - CDS 167333 - 168136 1042 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 168224 - 168283 8.1 + Prom 168200 - 168259 3.1 170 77 Op 1 . + CDS 168288 - 168917 491 ## COG4330 Predicted membrane protein + Prom 168966 - 169025 9.7 171 77 Op 2 . + CDS 169069 - 170475 1582 ## COG2252 Permeases + Term 170564 - 170613 14.0 + Prom 170599 - 170658 7.5 172 78 Tu 1 . + CDS 170685 - 171881 958 ## COG0477 Permeases of the major facilitator superfamily + Term 171893 - 171948 3.1 - Term 171884 - 171935 10.5 173 79 Tu 1 . - CDS 171936 - 172121 266 ## EF1043 hypothetical protein + Prom 171981 - 172040 4.8 174 80 Tu 1 . + CDS 172239 - 175568 3228 ## COG0587 DNA polymerase III, alpha subunit + Prom 175599 - 175658 6.7 175 81 Op 1 12/0.042 + CDS 175741 - 176703 1303 ## COG0205 6-phosphofructokinase 176 81 Op 2 . + CDS 176768 - 178525 2450 ## COG0469 Pyruvate kinase + Term 178577 - 178622 8.3 + Prom 178819 - 178878 8.2 177 82 Op 1 20/0.000 + CDS 178899 - 179468 594 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 178 82 Op 2 . + CDS 179525 - 179704 322 ## PROTEIN SUPPORTED gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 + Term 179729 - 179779 12.2 + Prom 179794 - 179853 7.5 179 83 Tu 1 . + CDS 179909 - 181330 1705 ## COG0362 6-phosphogluconate dehydrogenase + Term 181341 - 181384 9.2 + Prom 181370 - 181429 3.4 180 84 Op 1 40/0.000 + CDS 181488 - 182174 957 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 181 84 Op 2 . + CDS 182185 - 183693 1314 ## COG0642 Signal transduction histidine kinase + Term 183874 - 183912 -0.0 Predicted protein(s) >gi|308151750|gb|GL476272.1| GENE 1 102 - 2108 1857 668 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 12 653 11 647 666 751 58.0 0 MLHKAEGFDRRKFTMAGILVAMGVVYGDIGTSPLYVMKAIVGDNGGLARVSESFILGSVS LIFWTLTILTTIKYVVIALNADNHGEGGIFSLYTLVRKKSKYLIIPAMIGGAALLADGVL TPAVTVTTAIEGLRGIPAFFERFGNDQTIIVVITLTIILILFSVQRFGTELVGKAFGPIM FLWFTFLGIIGLMNFSQDWTVIRALNPYYALQLLVSPENKLGLFILGNIFLATTGAEALY SDLGHVGKMNIRISWPYIKICLILNYLGQAAWLLTVKENPEMQALAEINPFFQMIPRGIL VFGVVFATIAAVIASQALISGSYTLVSEAIKLKLLPRLKIIYPGSNIGQMYIPAVNLILW LACSAIVLAFRTSTHMEAAYGLSITITMLMTTILLLFYLLDKIPAWSAYLISLFFAAIEV VFFFSSAAKFFHGGYVAVGMAVFLLCIMIIWERGNEIKEATAEQVSLEKYVPQLKALKED TSVPMYQTNVVFLTSDRVDGEINRNIIYSILDKQPKRANVYWFVNVQVTDEPFTQEYSVD MLGTDFIVQVQLYLGFHISQEVNVYLRQIVHDLMKTGRLPKQPQRYSLTPGREVGDFQFV LIQEELSNVSELKKWDRQIMQAKLAIKNLTTSPESWFGLEYSEVKYESVPLIIGPQRKTH LVERKNRS >gi|308151750|gb|GL476272.1| GENE 2 2178 - 2930 595 250 aa, chain - ## HITS:1 COG:no KEGG:EF0873 NR:ns ## KEGG: EF0873 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 19 250 1 232 232 416 99.0 1e-115 MYILRTPYPHIYSKRSVSMKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE LGLNLPNKRYLKKIAKACDTTVDWLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRL SEEQLSYHDSLKIMIQAQKLQQSFYAFPLTVEAPSHSQESISIYEPTTAEEQSDQSYYQP FILSELHELFTHSQNPELDYSLIIAFLPLLKVDQLTEPQKEVLLAIFKRMNSFKDQTLLN EFFVELQYLL >gi|308151750|gb|GL476272.1| GENE 3 3041 - 5146 2292 701 aa, chain + ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 4 698 63 763 764 561 43.0 1e-159 MSAKHNHEQHQEKQPTMSHDKMNHMNHDMAHEQMAMSHQHEGMKAMDHSMHMGNFKQKFW LSLILAIPIIVLSPMMGFQLPFQFTFPGSDWLVLILATVLFFYGGQPFLSGAKMELQQKS PAMMTLIAMGISVSYFYSLYAFYMNHFTNQAHVMDFFWELATLIVIMLLGHWIEMNAISN AGDALKKMAELLPDTVKRMTEHGEEEIPLQDVQEDDRLIVRSGDKIPTDGKILKGSTTVD ESMVTGESKTVEKNIGDSVIGGAVNGNGMIEISVTGTGENSYLSKVMEMVKQAQSEKSKL ESISDRVAKWLFYIALFVGVLAFIGWLMATKDLSLAFERMVTVFIIACPHALGLAIPLVI ARSTSIAAKNGLLLKNRNALEQANKVEYVLLDKTGTLTEGQFTVTGLELMSKQFTREEAL KYIGALEKNANHPLAIGIMNYLNKQAVQPYEAHNLQALSGVGLVATVQNQEVKIVNEKEV ARLQLTFDETIKTNYQEQGNTLSYLIIAGQLVALLALGDKVKPEAKTFIAELQAQGITPV MLTGDNQTAASAVANYLGMKEYYAELLPEDKEKIVQQYLTEGHQVMMVGDGINDAPSLAR ASIGIAIGAGTDVAIDSADVVLTDSDPKDILRFLDLAKQTRRKMIQNLWWGAGYNIVAIP LAAGVLAPIGIVLNPAVGAVLMSLSTIIVAANAMTLHISKK >gi|308151750|gb|GL476272.1| GENE 4 5270 - 6694 571 474 aa, chain + ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 474 857 98.0 0 MDFKELLSFEHKNMLELLDLLQQEQTFSVLMAAEKLKVSDKTIHCYIQRFEKKQETFKIE GLCKIYTTTKGIVKYRELCVCGLARFRQKFCYFIPEFYILRCLIEERINYAQLTQVLGLQ ESTLRKKLSNIRRWLVNFDIIVRQKHYDLTGNEWQIRQLILCFYLFFQESCLEENREMTR KIITFFELDLNVAQQNHLSWLIYIWEKRYRGGHEISVPKANLFQQTSAFFYLFRVEVLST SFMSLKEQKALFVILEAHFGGCFGKRARKYFIHEQMKIESLCLKTAIFIMKEIRRNFTQH HFNYQEIHLCRFLSTHMNSLLDGQAWLPAHKQEQTLAARYHQTWHRLQKLIRLLKHLYPV FTSVKERELTSCYFYHILDLFDPILYEKKYIICLLTDFPPEKEQALGQSIKSYFSEKKNI TIIHGKPTYQLHQVHLLIVNHLFQMNVALSSKTVVYLPEELSPAFFEKVEANLP >gi|308151750|gb|GL476272.1| GENE 5 6763 - 7674 1105 303 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 303 1 305 305 388 60.0 1e-108 MKQLQFGTSDETVSSVILGCMRLNGAENPQQVIETAYDHGITFFDHADIYGGGDCETIFG KALKESTIRREDIFIQTKCGIRQGFFDFSKAHILEAVEGSLQRLGVDSVDALLLHRPDTL VEPEEVAEAFHLLEKQGKVRYFGVSNQTPGQIELLKTAVKQPLLANQLQFGIKHTGMVDQ GLQTNMEISGSIDYDHGILDYSRLKQMTIQAWSPYQYGYFEGVFIGNEKFPELNQKLSEL AEKYQTTPTGLASSWILRHPANMQVIAGSMNLGRIEEIAKAADIVISREDWYDIYRAAGN VLP >gi|308151750|gb|GL476272.1| GENE 6 7862 - 10510 3224 882 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 322 882 1 560 560 640 60.0 0 MTKKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVL VAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIG TLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK EQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITEEPVEM EDILFEVVEDQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKMYTTNNLAVFESQ PFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQ HYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLF YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQL GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKV IQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYS QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY GISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLS DINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVF EVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK >gi|308151750|gb|GL476272.1| GENE 7 10610 - 11452 964 280 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 274 274 285 52.0 8e-77 MPELPEVETVRKGLEKLVVGKTIQEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGKF LIFKLSDNDMISHLRMEGKYEFHQADDEIAKHTHVMFTFTDGTQLRYLDVRKFGRMTLVP KNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQKLVTGLGNIYVDEAL WQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYLNALGEAGTFQIALNV YGQTGLPCNRCGTPIVKTKVAQRGTHYCPQCQQLKGRRLK >gi|308151750|gb|GL476272.1| GENE 8 11449 - 12048 707 199 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 191 197 171 50.0 8e-43 MTKVLGITGGIATGKSTVVALFKKAGYPIVDGDIIAREIVAKGQPALAAIVETFGPEIVL TTGELDRKKLGQLIFASPQKRELLNETLKPFLRKEILRQIEEAKKKAALVIVDIPLLYEA HYEAIMDQVAVVYVPEKIQKERLMARNQLTEEEAQQRIASQWPIEMKKERADIVFDNQGT REETEQQVKKWLEEQTGKK >gi|308151750|gb|GL476272.1| GENE 9 12228 - 12710 549 160 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 150 1 150 153 181 61.0 4e-46 MRCPRCHHNNSRVIDSRQADDGRAIRRRRECENCSYRFTTFERIEAAPLLVIKKNGDREE FNRDKILRGLIRSAEKRPVAMEQMVQIVDNVENRVRSLGENEVSTTLIGEYVMEDLVNLD EIAYIRFASVYRQFKDMSVFLKELQDIVDKAKSSSPDSEN >gi|308151750|gb|GL476272.1| GENE 10 12726 - 14135 1666 469 aa, chain + ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 20 465 20 465 472 120 25.0 6e-27 MKGNRQRIQPKNIFQAVIDSPLSDQEKEVLTFLYQPIVGANAFSLYWLLLSETTDSEENG SLFHADLISLLDLSCQQLEEACYKLEGIGLLETYKKTDRELGDCYLYYLKAPETAARFFK DEVLALVLFNRVGQRKFDQLVQKFQPHPTKTEGYQNVSASFQEVYAFKEEQIVSEANRLT TIQETFSQQEKSKKISVSTDSFDWHYFVEGLHRLGLQLPEDEASFQEEVYVFHQLYGINE LDMVDFASKSFDYYTSRILPKELVRTIHQAFDPDKKPQPTNVVTNKQAQLTVEEQQTYRY NALKMNGFSELDIQMIMDSEKNPPIQYLEALKNSRGGYTTPQERSLVKYLVAKSGLPTSV INILINYVYNIQQQPTLKAEYVNRIANEWGQSGIHSPEKAIEHVRELAKQSQTKQKQRQQ NYSGKRQTVRQERLPEWADQPNDETKLSPEEQAELDRQIQEFLNQGGDQ >gi|308151750|gb|GL476272.1| GENE 11 14135 - 15064 1044 309 aa, chain + ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 273 46.0 3e-73 MEDVGKEMSKIIQKRDINERYEELVNEVLKDQDVQAFIQANRERLSDEDIRKSYAKLYEF VQEKKKFQLNDPAMIAPGYEPRLMLNFHYIDVTYVPTADLIARQKEEEIRNRVRAMDMPK DVREANLRDFDPSSQGRAKALAEAMQFLREYPATPKEFHKGLYLQGPFGVGKSFLLGAMA NALAERGFTTTIVHFPTFTVEMKQAIGRDQVGEKLDAVKKSPILMIDDIGAESMTSWIRD DVLSVILQYRMQEQLVTFFSSNLDLKALEEHLTVTQRGEQEPLKARRIMERVRYLSKEIT MTGNDRRNG >gi|308151750|gb|GL476272.1| GENE 12 15251 - 15319 106 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFREKSYKVEVEKVNPKIQRLM >gi|308151750|gb|GL476272.1| GENE 13 15389 - 16354 857 321 aa, chain + ## HITS:1 COG:no KEGG:EF0884 NR:ns ## KEGG: EF0884 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 37 357 357 583 99.0 1e-165 MKFFIETRLKTDGGFLTNYLPDAERKDVATGHELLSESSGLYLRNLAFDTQGRFDNFYKQ TKDTFYDGVQFSYRIDEQGNKYNVNASIDDLRIIRSLIEAGGHFKTDQYDQEIKKLGKSF MKTSMKDNILIDFYDSKSKQQSSETSLFYIDLITLGYLYKEFGISADYLQYHYQLIDDGY ISDDLPLYQTKFNHQTNKYENNGTLNIIESLLTIVHLSEVGMAKQTSIDFVRKQVQQGTL FNSYDLNGSPVDKNQSAASYAIAALIGVAENDKELYRAAITVLNNFQIMDSSSPIYGGFG DKVTKQVYSYNNLMALLAYDF >gi|308151750|gb|GL476272.1| GENE 14 16368 - 17888 1076 506 aa, chain + ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 506 1 506 506 918 99.0 0 MEKIKKYMNSAFEWLSRYISPSLLAVLGIGLVTSILLFVYPINGLGDNGEYFRVLNSNSL YRVNGDSYDNVAYFVKDFSIMRYFNETTTHFVSTQQFFITIAIWLNKLFYSQTLFDIRFL GFVYLSCFLVSIYILVRGLTEGVSLKKSYLISLLVIFILGDTSYTIYFNSFYTEATSFLL SVSVLAFSVYFYRVTKPRTWLRRIVLVILAQAVVLLIGTTRQEYLLIIGVIIAGLGFFVY LSQRYQRLSMTAFLIALIGFTTLAAFIVPNDIYERDVYHSMTRGVMKDSKVPDKRMSEGG INPQYGLQKGRSYFEEYSPVSPTSEQMKKDFFDKTSFGWVLLNYLNYPSELWQGLNSAVP NVYLVKPNNVGNFEKTTGRAPLEQSKFFMVYNRIKASFFPKNFAFYLLLGVILFGLYGVG LYRGLKRNEPRLVFRFFLMTGIYLNLLVVFISTIIIDGDSDLVRHLFLVSVFLDFLLLQI VSDVIGKRMWQDTTPQVIGEVEGIEK >gi|308151750|gb|GL476272.1| GENE 15 17878 - 19461 1447 527 aa, chain + ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 521 22 498 499 94 22.0 4e-19 MKNKQYLIGWVCFLLFFVFCGFAKPALAAPSKHVLLVYDSLNIAGKKENDVDALQRVLTS FGVEVQSVAVSDYVPGELLNDGYDSLISMVNWPEQAGVIASDFLADRVHFKGKQLHIGRN MRDDEKQYFSGTWKELSHRQYRLEDEKNRFSQVLPFQDQSVVLENTQGQTVGRLKTQELA PEEYPFGVIENGHAFLPMFERKGAVFLESLDVISQWLESEKMSRPFLTISDFNPLRDMSV ATYLQEELVKTTYPYILSSTSVSQNNTILPYKLFTNALRAFASTGVIFLETPVVNNVDLN DQRALKQLMEQQISLLVDRHVYPVGISAPGYWNQDLQYQEDGLAISDTVILRENPPIERV FYRNQTGESITYKNALFDLPYDYLSGIEWTDKDNPNDYRFPMPTTISFSFPNSKKEVDHL IQEVKEAPIVFSVSEADQHFTVQTQTQKIEFRNNRFFLNNQIVNGLADTGASTVEKQRFT ELFSFFFSITNNILVGVVTLTLIILIILFMIGRKNYRSKYINKEEDK >gi|308151750|gb|GL476272.1| GENE 16 19458 - 20720 1141 420 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 419 1 416 416 580 68.0 1e-165 MTIADIVMLTATIIIWSLLIVNILLVIFGYVYYLKTDPVAPPPVEDEDAPFVSIMVPAHN EGIVIVRTVEALLNFNYPQDRYEIIVINDNSSDNSAELLANVQKKAVNRNLQIINTDNIT GGKGKSNALNIGFKQAKGDVIAIYDADNTPEPNALRYLVGELIASEEYGAVIGKFRTRNR NASLLTRFINIETLAFQWMAQAGRFQLFKLCTIPGTNFIVRRSIIEAIGGWDDKALAEDT EISFRIYMMGYKIKFQPKAVTWEQEPQTLSVWFRQRTRWVKGNIYVIVKNAKLLFNPKAS RIRFDILYFLSIYFLLMTSLVLSDIMLVLSMSGYLTTTLQGFSNSLWLLAILLFIFSTFV SITTEKGEMTLENILIIALMYITYSQMWLVVAAYGMVMYIKENVFHKQTQTKWYKTERFK >gi|308151750|gb|GL476272.1| GENE 17 20735 - 20977 254 80 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 688 152 98.0 4e-36 MKQKTVTLIGLFFLAILIGVASPTVYAENKEQDNHTFTQPFQNKTISLTGTSVRSTMYFT KIDYWDVKKASFNMNYQITQ >gi|308151750|gb|GL476272.1| GENE 18 21005 - 22801 1603 598 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 598 91 688 688 1112 99.0 0 MAVNGVKFYSWRPENTTGIQQKTIEIPLELIKETNTLTVEGQIINQAGNDMYNLIETPAN WLTMYEGSNVNFQYDLQLPENTIHSFYNHFVGADTIANKHSVILTPENASEKELAAATHA LAGAARLITTSEELLPMASLNKEQSAPYQLIIASYDKLPDQYKSQIDSKRVEDQAVLKFF NQPDKHVLVATSKDEDLLVRAGRYLANYELMTQTDKEETTVDENTDTFSSTLEFDGNYPL TSTGDKLEGVYHQEQTYFVNLPVDRNNANGSRVHLHFKYAENLDFDSSLVTVYANDKPIG SKKLTAARANGDELNLEFPKNLEIADSFVLKVAFDLNVKSPEVLRNGQTPWAFIENNSNA FIQTEELNDILFNNYPNIFIRSRSFADLAILLPEKMDDNYFKVLTNLFNLIGNYAESNVG EITYYKKAPKNAALENHNLIIFGTPKDNPMIRKLNDQLYFHYDKDFTRFVSNEKLSIEKD YGKQIGTAQLMFSPYNAKAAALILTGAKSQGVFLASTQVNTEKNTSMYKGDAIVVDPNYR RYDYRFKKRVSNVSNESLGKRIVNNHKLMIYLFVFLIGMTIIGLSAFFIVKKNLKGGE >gi|308151750|gb|GL476272.1| GENE 19 22803 - 23651 1056 282 aa, chain + ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 4 282 2 284 284 120 27.0 3e-27 MNQKRVTLLLDLTLLVGIVLVVGTTIFMALGTNDFFVDLSCLLISVILIIVTYFVGITAG LTFSLIFIFLQLTYVVYQYVYHDLFSYGSLFWLIMPPLYCLTIYAVTYQIRTIEEENIRL RKETSRLNALDAVTNLRTAKMYEEGFDLFSDISTRYEAPLYLVVIRVAYWESIRNLLSPE QKNELLQIVTAAIKETTDDRFLPYFIDGTPPTWALLIFRDGDDGYTTRKEFKQQAQEKFA HSETLRNITLTLQVSYTKYDPAEFNNASEFLGDGINSLQYDV >gi|308151750|gb|GL476272.1| GENE 20 23667 - 23978 401 103 aa, chain + ## HITS:1 COG:no KEGG:EF0890 NR:ns ## KEGG: EF0890 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 173 100.0 2e-42 MTEKLAVFTGKLAEAGVLNETQPLSMRLHLENIQAESDPESIVPLFSHGVILNILVEQLE ESIPLSHLKKGTKVRFTVVGLPPMTMSIPPHVGGQAIELIEEI >gi|308151750|gb|GL476272.1| GENE 21 24026 - 25180 1285 384 aa, chain - ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 2 383 383 490 63.0 1e-138 MDRKNIATRYQQPTENLLMDIATLAKKTPNLIDLSIGDPDLITDERIIEQAANDAKNGHT KYTASDGSEAFIEAVIQFYQSHYQLSFQPNQVRATVGALHGMYLALQVILNPGDEVIIHE PYFSPYKDQVLLADGVPVFLPTYEEDGFQIDVALLKEKITPKTKAIILNSPNNPTGAVFS EETFREIAQVAIEHNLYILSDEVYEAFCFQETFTPMATFAPENTITFGSFSKAFAMTGWR IGYMIAPDYINEVAKLINEGVTYSAPTLSQQAGIYALQHFDEFVDPIVEVFQTRLEYVAQ RVAKIPFLSLHPVKGSIYAFINIQKTGLTSVPFVEKLLKETQVLVIPGKAFGETTGDEYI RLAATQNLDLLKEAFDRIERMTFE >gi|308151750|gb|GL476272.1| GENE 22 25196 - 25918 633 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 52 1e-64 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAASEATEHALSL LEQVGLSDKKENYPSQLSGGQQQRVAIARALAMRPDVMLFDEPTSALDPEMVGEVLSVMK NLAIEGMTMVVVTHEMGFAKEVADRVIFMDAGIIQEEGTPEEIFDAPQNPRTQDFLRKVL >gi|308151750|gb|GL476272.1| GENE 23 25911 - 27374 1704 487 aa, chain - ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 271 3 271 271 312 62.0 8e-85 MTKCKKWLQTILPILFLLLSLLPIKETFAAENDPVYDKIIQKGELVVGLSADYAPYEFHA KVDGEDKIVGFDISIAQKIADDLGVKLKIEELGFDALLGALKTGKIDMVISGMSPTPERL KEVAFSQPYMNVQQRVIVRKEDKDKFHSTKDFEGVRAGAQKQTTQEELIKTELTGAVPTS LQKIPDLIMNLKNNKLDAVVMEEPVGEAYVSQNEDLAFADVTFEKGSKDTAVAFPKDAPV LTEKVNASIKQINDQKLMDGYKKEANQLMFQKDQSFLQKYGKFYLNGAGYTIFLAFIGVL FGAILGALLALMKLANSKILRGIAIAYIEYVRGTPLLVQIFIVYFGTGVLGLDLSKVAAG CIALSLNSGAYVAEIIRAGIQAVNKGQLEAARSLGMNQNQAMRYIIFPQAIKNILPALGN EFVTVIKESSVVSVIGVSELIFQAGNVQGASFKPFLPYLIVSLIYFVLTFTISRLLGVAE RRMSTSD >gi|308151750|gb|GL476272.1| GENE 24 27564 - 28652 1205 362 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 1 362 2 364 368 404 54.0 1e-112 MEQSLIVRGTPQEYLCKIGSWELLEGQLLCRNIHRVFILHGTESWQAAKPYFPTFQKVTA VFENYGGVCTDQRVQKLEAQVLDNHLEAIVAVGGGKVADLGKALAHKMALPVIILPTLAA TCAPCTPLSVMYREDGAMERYDVFPQANALVLVEPRVLLHSPRSLMVAGIGDTLAKWYEA DAIISQLDVQVLPIQVSHFAAEKCRDILLNESINALKAMEEQQLNQSFIDVIETNLIIGG MVGGFGDDYGRTAGAHSIHDALTLLPASHRQLHGNKVAYGVFVQLAIEEKWQEIDELIPF YHQLGLPISLKEMEMDLTEAEYQEVAERACIEGETIHYMKQKITPEIVKTAMQDLEKYTA TK >gi|308151750|gb|GL476272.1| GENE 25 28811 - 29956 1348 381 aa, chain + ## HITS:1 COG:SP2058 KEGG:ns NR:ns ## COG: SP2058 COG0343 # Protein_GI_number: 15901878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 380 682 83.0 0 MTEPAIRYRLIKKDKHTGARLGELITPHGTFPTPMFMPVGTLATVKTMSPEELKEMGAGV ILSNTYHLWLRPGEDLVEEAGGLHKFMNWDQPILTDSGGFQVFSLSDMRKIEEEGVHFRN HLNGSKMFLSPEKAINIQNKLGSDIMMSFDECPPFDESYEYVKRSIERTSRWAERGLKAH ANPDRQGLFGIVQGAGFEDLRRQSAKDLVSMDFPGYSIGGLSVGESKEEMNRVLDFTTPL IPENKPRYLMGVGAPDSLIDGVIRGIDMFDCVLPTRIARNGTCMTSQGRLVVKNAQYARD FRPLDEKCDCYVCRNYTRAYIRHLIKCDETFGIRLTSYHNLYFLLDLMKNVRQAIMDDNL LEFRQAFFEEYGFNKANAKSF >gi|308151750|gb|GL476272.1| GENE 26 30038 - 30415 588 125 aa, chain + ## HITS:1 COG:L184708 KEGG:ns NR:ns ## COG: L184708 COG1862 # Protein_GI_number: 15674113 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Lactococcus lactis # 4 114 3 106 110 76 52.0 1e-14 MGGGFTMIFTLVLLGGMMFFMTRSQKKQQQERQKQLNAMKTGDSVVTIGGLHGVLSEINE KTVLIDCEGIVLEFDRAAIRTVTPGTAVTNDSAVTSVPVTEVEETVTEEVTEVPETSDPS KEKKD >gi|308151750|gb|GL476272.1| GENE 27 30695 - 30982 283 95 aa, chain + ## HITS:1 COG:no KEGG:EF0899 NR:ns ## KEGG: EF0899 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 155 96.0 4e-37 MTKEKLSWLQQKMLNKSIKKKCQNFRELGYSSINEEDLLTYLLTYRWKKQARLSVKDCRK DIQKVKPNEFFDYQQLLAQTSKNPLRDWHDIEDLF >gi|308151750|gb|GL476272.1| GENE 28 31005 - 31079 61 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDKKIINSCEKYHKNYLQDSFYVV >gi|308151750|gb|GL476272.1| GENE 29 31138 - 33735 2993 865 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 457 863 1 407 411 650 76.0 0 MVKTVKKEKTETVDVSSMIDELATKANVALKAMEDFTQEQVDHIVHQMAMAALDQHMPLA KMAVEETGRGIYEDKAIKNMYASEYIWNNIKHDKTVGVINKDEQTGLMEIAEPVGVVCGV TPTTNPTSTTIFKSLIAIKTRNPIVFAFHPSAQKCSAEAARIVRDAAIAAGAPENCIQWI EQPSIDATSALMNHPGIAIVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIEKTAKVKRA VNDLIVSKSFDNGMICASEQAVIVDKEIYASVKAEFEAHNVYFVKPNELQKLEDAVMNEG KYAVNPAIVGNSAEKIAELAGISVPKGTKILVAELEGAGPEYPLSREKLSPVLAMMKSNN AEHAFELCEAMLNLGGLGHTAVIHTEDEELQVAFGLRMKACRILVNTPSAEGGIGNIYNE MIPSLTLGCGSYGKNSVSKNVSAINLINIKTVAKRRNNMQWFKLPPKIFFEKNSLQYLQK MENVERVMLVCDPGMVQFGYADIVRKELQKRKNDVKIEVFSDVEPNPSTNTVYAGTKMMV DFQPDTVIALGGGSAMDAAKGMWMFYEHPDTEFFGAKQKFLDIRKRTYKIAKPEKTQFVC IPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDVAIVDPQFVMSVPASVTADTGMDV LTHAIESYVSVMASDYTRGLSLQAIKLVFDHLENSVKRPDMESREKMHNASTMAGMAFAN AFLGICHSIAHKIGGEYGIPHGRTNAILLPHIIRYNAKDPSKHAMFPKYDYFRADTDYAD IAKFLGLKGNTTAELVEALATAVADLGKSVGIDMNLKAQGVSQETLDTTVDRMAELAYED QCTTANPKEPLISELKQIILDAYVG >gi|308151750|gb|GL476272.1| GENE 30 33780 - 34823 1035 347 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 9 345 349 318 45.0 1e-86 MNRKDEHLSLAKAFHKEKSNDFDRVRFVHQSFAESAVNEVDISTSFLSFQLPQPFYVNAM TGGSQRAKEINQQLGIIAKETGLLVATGSVSAALKDASLADTYQIMRKENPDGLIFANIG AGLGVEEAKRALDLFQANALQIHVNVPQELVMPEGDRDFTNWLTKIEAIVQAVEVPVIVK EVGFGMSQETLEKLTSIGVQAADVSGQGGTSFTQIENARRKKRELSFLDDWGQSTVISLL ESQNWQKKLTILGSGGVRNSLDIVKGLALGAKSMGVAGTILASLMSKNGLENTLALVQQW QEEVKMLYTLLGKKTTEELTSTALILDPVLVNWCHNRGIDSTVFAKR >gi|308151750|gb|GL476272.1| GENE 31 34807 - 35913 1201 368 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 320 44.0 4e-87 MIEVTTPGKLFIAGEYAVVEPGHPAIIVAVDQFVTVTVEETTDEGSIQSAQYSSLPIRWT RRNGELVLDIRENPFHYVLAAIHLTEKYAQEQNKELSFYHLKVTSELDSSNGRKYGLGSS GAVTVGTVKALNIFYDLGLENEEIFKLSALAHLAVQGNGSCGDIAASCYGGWIAFSTFDH DWVNQKVATETLTDLLAMDWPELMIFPLKVPKQLRLLIGWTGSPASTSDLVDRVHQSKEE KQAAYEQFLMKSRLCVETMINGFNTGKISVIQKQITKNRQLLAELSSLTGVVIETEALKN LCDLAESYTGAAKSSGAGGGDCGIVIFRQKSGILPLMTAWEKDGITPLPLHVYTYGQKEC KEKHESKR >gi|308151750|gb|GL476272.1| GENE 32 35916 - 36911 1165 331 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 325 4 327 327 350 57.0 2e-96 MLSGKARAHTNIALIKYWGKANEEYILPMNSSLSLTLDAFYTETTVTFDAHYSEDVFILD GILQNEKQTKKVKEFLNLVRQQADCTWFAKVESQNFVPTAAGLASSASGLAALAGACNVA LGLNLSAKDLSRLARRGSGSACRSIFGGFAQWNKGHSDETSFAENIPANNWENELAMLFI LINDGEKDVSSRDGMKRTVETSSFYQGWLDNVEKDLSQVHEAIKTKDFPRLGEIIEANGL RMHGTTLGAVPPFTYWSPGSLQAMALVRQARAKGIPCYFTMDAGPNVKVLVEKKNLEALK TFLSEHFSKEQLVPAFAGPGIELFETKGMDK >gi|308151750|gb|GL476272.1| GENE 33 36911 - 37855 970 314 aa, chain - ## HITS:1 COG:lin0010 KEGG:ns NR:ns ## COG: lin0010 COG1577 # Protein_GI_number: 16799089 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Listeria innocua # 9 307 4 301 322 211 42.0 2e-54 MNIKKQGLGQATGKIILMGEHAVVYGEPAIAFPFQATEITAVFTPAKTMQIDCAYFTGLL EDVPQELANIKEVVQQTLHFLKEDTFKGTLTLTSTIPAERGMGSSAATAVAIVRSLFDYF DYAYTYQELFELVSLSEKIAHGNPSGIDAAATSGADPLFFTRGFPPTHFSMNLSNAYLVV ADTGIKGQTREAVKDIAQLAQNNPTAIAETMKQLGSFTKEAKQAILQDDKQKLGQLMTLA QDQLQQLIVSNDMLDRLVALSLEHGALGAKLTGGGRGGCMIALTDNKKTAQTIAQTLEEN GAVATWIQSLEVKK >gi|308151750|gb|GL476272.1| GENE 34 38125 - 38760 463 211 aa, chain - ## HITS:1 COG:BS_yisX KEGG:ns NR:ns ## COG: BS_yisX COG1357 # Protein_GI_number: 16078153 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 9 210 9 211 212 114 29.0 1e-25 MKITYPLPPNLPEQLPLLTNCQLEDEAILENHLYQQIDLSNQEIRNLVFRDAVFDHLSLA NGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLKDCLFEDCKAD YASFRFANFNLVHFNQTRLVESEFFEVTWKKLLLEACDLTESNWLNTSLKGLDFSQNTFE RLTFSPNYLSGLKVTPEQAIYLASALGLVIT >gi|308151750|gb|GL476272.1| GENE 35 38757 - 39830 1062 357 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 329 28 337 361 113 28.0 6e-25 MKNSTFLKDLFAIDKANDELFRLVGVAICMAIPLLIGYFSNNLLIGTFGSMGIYTFIYYQ PLPLPQLLRRLNIVGFFIVLGNSLGMLSHHVPWLIPITIAIVAFLARLLFRLYGIEKPGA LLVIMSTAMGTSNNFPLHKIPIMASFVLLGVVTGIIMGIVLHFIDKRPYVFQKRMSLQER LYIDPASLLDALHYAAILFLAAYLSQSLHLVNAYWMTFTCAAILQGENLHSVMQRNVQRI LGTSLGLLLSAILLMIPFTPLQTIGIISILYAAFEGFINRNYAIASFFITPMSLLLSNLA RQQVISNLLNYRLVGIVLGSLLGFAGAYVFTTALRFYNRAYSIDETFENQQEERGVL >gi|308151750|gb|GL476272.1| GENE 36 40074 - 41744 2010 556 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 556 22 559 559 442 44.0 1e-124 MKLKKSLTFGVITLFSVTTLAACGGGGTSDSSSASGGGKASGEQVLRVTEQQEMPTADLS LATDRISFIALNNVYEGIYRLDKDNKVQPAGAAEKAEVSEDGLTYKIKLNKDAKWSDGKP VTANDYVYGWQRTVDPATASEYAYLYASVKNGDAIAKGEKDKSELGIKAVSDTELEITLE KATPYFDYLLAFPSFFPQRQDIVEKYGKNYASNSESAVYNGPFVLDGFDGPGTDTKWSFK KNDQYWDKDTVKLDSVDVNVVKESPTALNLFQDGQTDDVVLSGELAQQMANDPAFVSQKE ASTQYMELNQRDEKSPFRNANLRKAISYSIDRKALVESILGDGSIEPNGLVPADMAKDPS GGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQ DALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGGWSADYADPSSFLDLFASDNSYNRGRYN NPEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDMGVVPLFQKSEAHLRAEKVKDVAV HPAGATYDYKWAYISE >gi|308151750|gb|GL476272.1| GENE 37 41823 - 42173 328 116 aa, chain - ## HITS:1 COG:no KEGG:EF0908 NR:ns ## KEGG: EF0908 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 169 99.0 4e-41 MKTFKWPIITAVISSIGIFLYLLISKEPITTSSLSDTFFIVSLFFLIIGIALWIMSSGFF DNFQRSMKNAFRFKKKNEPKEFIPLSVIGDAHRSFWLKTGGILLILSLGFLLFYLV >gi|308151750|gb|GL476272.1| GENE 38 42264 - 43205 244 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 9 303 6 310 320 98 25 2e-19 MNSFGKYFLKRIFFMIITLWLIATITFFLMQLLPGTPYTNQEKLSPETIAMLNKQSGLDK PVIVQYGIYLKNLVTGDFGISFQFKNQPVAKLLAGRIGPSLQLGGQAIIFGTLVGILLGI IAAMRQNTWVDTLATLLAILGRSIPNFVFAVLLQYIFAMKLRILPIAMWNGFAYTILPTI ALAMSPMADSARFIRTEMVEVLHSDYVELAKAKGLSRWQVAFRHGLRNSLIPLITLLGPL AVGLMTGSLVVENIFAIPGIGEQFVKSIMTNDYPTIMAVTILYSTMLVVVILIVDLLYGL IDPRIRVSGGAKG >gi|308151750|gb|GL476272.1| GENE 39 43205 - 44257 1127 350 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 16 350 6 344 344 353 55.0 3e-97 METVNKNNLPQAIKDIPADEFQPLNTSTLKERERIATPSLSFLQDSWRRLKKNKAAVISM SFLAVIIFISIITIWVSPHNPTKQNVSYINLPPRIPGLESVNGLNGKTTVAGQLVDKYAQ ANVPDNVNFYLGTDGLGRDVLSRLFMGTRISLLIAFIAAILDITIGVTYGLISGLVGGRV DTVMQRILEVLSGIPNLVVMILMLTVFDPGIVSIVLAMVITNWISMARIVRAQTMKLKDQ EFVMAAETLGESRWKIAIKHILPNISSVIIVQMMFSIPSAIFFEAFLSFIGLGLRPPTAS LGTLLNEGYKTFRFLPYLMWIPAATLSVIMICFNLLADGLRDAFDPKMKE >gi|308151750|gb|GL476272.1| GENE 40 44273 - 44449 214 58 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 40 1 40 358 70 82.0 7e-13 MEKVLEVKDLRISFDTFAGKVNAIRGVSFDLYKGETLAIVEVNQGVVNLLQLAVLCVC >gi|308151750|gb|GL476272.1| GENE 41 44395 - 45327 538 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 278 55 326 329 211 41 1e-53 GESGSGKSVTTRSIMRLLSSNANIDNGEILFKGQDIVHKTEKQMQAIRGKEIAMIFQDPM TSLDPTMPIGKQVAESLIKHNKVSKKEGLAQALELLKLVGIPNAEKRLKNYPHQFSGGQR QRIVIAIALICYPEVLIADEPTTALDVTIQAQILELLKDLQEKISTSIIFITHDLGVVAN VADRVAVMYGGRLVEVGTAEEIFYNPQHPYTWGLLGSMPTMEGTEDKLYAIPGSPPDLLD PPTGDAFYPRNEFALKIDTEKEPPYFEVSPTHKAATWLLAPQAPKVTPPAEIVRRWAIYA ERQKNPGGSN >gi|308151750|gb|GL476272.1| GENE 42 45327 - 46283 1271 318 aa, chain + ## HITS:1 COG:lin2296 KEGG:ns NR:ns ## COG: lin2296 COG4608 # Protein_GI_number: 16801360 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Listeria innocua # 1 308 1 311 322 429 68.0 1e-120 MAEEKKVLLEVTGLKQYFNVGRKDEVKAIDDISFHIYEGETFGLVGESGSGKSTTGRSVI RLYDPTAGEILFDGKDISKIKSKADMQAFRRDVQMIFQDPYASLNPRMKVNDIIAEGIDV NGLAKTPKEREEKVNELLKTVGLNPSHSTRYPHEFSGGQRQRIGIARALAVNPRFIICDE PISALDVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSD DVYNFGVHPYTESLLSAIPLPDPDYERTRKRIVYQPAAADGKDRELREILNGHYVYCAED EVAMYREKIEEKKRKAGL >gi|308151750|gb|GL476272.1| GENE 43 46324 - 47394 761 356 aa, chain + ## HITS:1 COG:DR1593 KEGG:ns NR:ns ## COG: DR1593 COG0675 # Protein_GI_number: 15806601 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 5 314 5 316 408 145 34.0 2e-34 MKALKAYKYRLYPTSKQEEFIQKTFSCVRLVYNLMLQDRIDIYKEMRKNPQQTFKMPTPA KYKKQYPVLREVDSLALANAQVYLDRAFKNFYREKGMGFPKKKKKETVHSYTTNNQHGTV KILDNRYLKVPKLKSLIKMKVHRQPLGEIKSVTISMSASHNYYVSILCEAPVETKTKQQK MVGICSSREKFALLSNGESFEKSYCSKHLKQKLRQEERKLNKRKMIALEKGFDLSQAKNY QKQKIKVAKIREKIANQRTDILNKITTELVSSYDVICIEKAHHCNERPPKHDRSELAWSL FLAKLLYKAQWYGKELICIESEEIETELSFSESTENSEYLRSKKILERGLSKRETL >gi|308151750|gb|GL476272.1| GENE 44 47814 - 48314 426 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 2 163 1 164 166 168 50 1e-40 MVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVARIMDYGKF RFEQQKKEREARKKQKVINVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIRFKGR AITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFLTLAPKNDK >gi|308151750|gb|GL476272.1| GENE 45 48428 - 48628 340 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 [Enterococcus faecalis V583] # 1 66 1 66 66 135 100 1e-30 MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQ QLARMK >gi|308151750|gb|GL476272.1| GENE 46 48689 - 49048 595 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 [Enterococcus faecalis V583] # 1 119 1 119 119 233 100 3e-60 MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKL WIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK >gi|308151750|gb|GL476272.1| GENE 47 49095 - 49445 613 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 [Enterococcus faecalis TUSoD Ef11] # 1 116 1 116 116 240 99 3e-62 MTFQETISAYIQERYQITPDFPFKKHPDYLVFRHPRNAKWFALIMPLDAQLLGATENKQL TILTVKLAPELIALLKNQPGYFPAYHMNKEHWLSLSEEIPLSQVFSFIDESYQRSY >gi|308151750|gb|GL476272.1| GENE 48 49543 - 49902 537 119 aa, chain + ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 116 1 116 119 124 71.0 6e-29 MTLISTILVTLVAVEFFYIMYLETIVPTSETTSRVFKMDKQELQRKSVTTLFKNQGIYNG LIGAGLIYSVYFAQATMEMTKFLLIYIILVAAYGSLTSDKKIILTQGGLAIVALISLLI >gi|308151750|gb|GL476272.1| GENE 49 50030 - 50464 632 144 aa, chain + ## HITS:1 COG:lin1092 KEGG:ns NR:ns ## COG: lin1092 COG0454 # Protein_GI_number: 16800161 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 142 2 142 150 108 40.0 4e-24 MLNQKEVKKTDYPQLISLWRSSVEATHLFLSQADIDKIEVVLPDYFQQVQLSMWLNEEQK CVGFSGTNQQTLEMLFIDPVYFRKGYGGEIIKKLIEQESIVFVDANKQNEGAVKFYQSQG FQVIGESKEDPQGNPFPILHMKRI >gi|308151750|gb|GL476272.1| GENE 50 50482 - 50997 181 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 3 160 175 337 601 74 30 3e-12 MRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI EKVDLLQGEFERIGYEYMGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNY LRENLAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKEVLKKYWEK >gi|308151750|gb|GL476272.1| GENE 51 51013 - 52188 1122 391 aa, chain - ## HITS:1 COG:PA2563 KEGG:ns NR:ns ## COG: PA2563 COG0659 # Protein_GI_number: 15597759 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Pseudomonas aeruginosa # 7 380 6 382 495 340 49.0 2e-93 MLFSIKKSEWLGNERNDLFAGLVSSVAILPEVIGFAIIAGVHPLSAVFASAVTLLVHTFT GGRPAMVSASAGSMALVLAGLIQAHGLSYMLAATILTGFLQFILGYLGIHKLMRFIPKTV MYGFVNALAILIFMAQVQQLPHQTLWSYGMIICSILLIYLLPKFITIVPPALIVILFMTI LSYFLKGHLQTVGDLGEMSQFHPAIRWPNVPVNLETLRIILPSSVALAMVGLIESLLTIP IVDKMTASQSDSQREVKAQGLANIITGFFGGQAGCAMIGQAVINVKSGGRKRLSTLISGI TLLLFIFVFKSVMVAIPTAALIGIMMTVAVDTFDWESLQLFRTFEITEIVILLVTVGVIV YTHNLAIGIILGVLLSGLLYHFFKKEPKKSC >gi|308151750|gb|GL476272.1| GENE 52 52418 - 53446 959 342 aa, chain - ## HITS:1 COG:L178384 KEGG:ns NR:ns ## COG: L178384 COG2855 # Protein_GI_number: 15672357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 15 331 3 320 331 281 56.0 1e-75 MKNSENDYIQSLFQILPGLLTAFLVACLSKFLAIWLPSLGAATIAILLGIFLGNTFVRGA NLNRGTKVAESKLLEFSVILLGTTVTFQTIAQIGLQGVAFILIQMSLTIIFAYLIGKKLA FSDNMSLLMAGGNAVCGSSAIASIAPAIQADEEEKGQIITLVNLLGTVLMLTLPILSGIL YGTNLLARSALIGGTLQSVGQVVASANMVNENAVQLAMLFKIMRIVLLVAVVYLFGRFKQ SKTAESEAELVEVTKKSSALPWYVVGFFIACVFNSLIHFPVVISDTAHFFSSWFEITALA AIGLRLDFKKFFQEGKRFLIYGLSVGTVQVVLAILLLALLQF >gi|308151750|gb|GL476272.1| GENE 53 53553 - 54389 737 278 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 3 267 1 266 272 191 40.0 1e-48 MPMFKLLKTFQIVYEQMNFSKAATCLYISQPAVSNQIKQLEEELGCSLFLRNGRQDVVPT RQAEVLYNRLLNLADDWQETLTALHQARLPKETCRIAASNTFAVYYLPQLMQHLQTQYAT INFVLEMNNSEEVVEKVEKHQVDFGFIEKPLITKGASREEIIQDQLVLAGDPANQNWLVR EKDSGVFHYTQQYLEESNQSPTLMTVKNNEMIVKMLELGMGQSLLSRKAITEKIPFQTLG EKYWRSFYFLTRGHLKSSLLQEVKQAIYRFYQTEMNKY >gi|308151750|gb|GL476272.1| GENE 54 54454 - 55326 826 290 aa, chain + ## HITS:1 COG:CAC3467 KEGG:ns NR:ns ## COG: CAC3467 COG3865 # Protein_GI_number: 15896706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 288 1 294 294 167 32.0 2e-41 MPKFSPCLWFDTQAEEAANFYTTIFEKGAILSKTNYVNEEHQPQGTSLMTIEFTLANQTI IGLNGGPEFSFTPASSFFVECKTLSQTETLWKNLTTDGQILMPFGEYPFSPLYGWVVDKF GVSWQVSFSGKEQTIVPTFMFANEKYGEAAKALSEWLAIFGPGEIIEKVEYEDGTIAQAL FTLQEQPFRVMDARDKHDFDFTMAFSIYIDCENQEEIDRLWQQVTAKGKEWPCGWMEDQF EVSWQTGNPELKRYLSDSNPARANEVTKKLYQMKKIDLNQLKEVYDKYNH >gi|308151750|gb|GL476272.1| GENE 55 55598 - 55822 307 74 aa, chain + ## HITS:1 COG:no KEGG:EF0925 NR:ns ## KEGG: EF0925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 96 98.0 4e-19 MIELIVLLTVFTYGTNFVLYLILKNKKSMPIVEKASIVLGINMSVLLLDGIFAFVGKFIM LSEWELLAPIFEMV >gi|308151750|gb|GL476272.1| GENE 56 55911 - 56585 835 224 aa, chain + ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 246 52.0 2e-65 MAKIMIVEDETTIRELISEELQKWQFETIGTTDFNDVLDDFQEENPQLVLMDINLPVYDG YYWCQKIREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSY NYSDTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRA LWDDERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMVP >gi|308151750|gb|GL476272.1| GENE 57 56599 - 57624 900 341 aa, chain + ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 336 339 201 33.0 2e-51 MTILKYLKDRWLLLIGWLFFLFLTCFILWLAPNVRLDWTVVGYIFLLQSVFLSLFLTIDY YLKRKWWLSLATEKEPPSLQEYLNTAEKEEELLVQTYINGLLQEHQQTMQQAINNQQDQK DYIDSWVHEIKVPLAAITLLVQSVEDDIPEKKYYLLENELGKIDEYVEQVLYYARLDSFS RDYLLQEYSLKEIVQSVVRTQANYFIQKRLQFSIEGEDEAVLTDRKWVIFIFRQLLSNAV KYTPEGGTITVLISKNKQGIYLSLKDSGIGIPTQDQRRIFDKGFTGENGRKSEQHSTGLG LYLAHSLAKKLGHDLTVESTEGQGTTMTLFFPSLSYYNEVK >gi|308151750|gb|GL476272.1| GENE 58 57772 - 58635 1095 287 aa, chain + ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 10 287 1 277 277 233 49.0 3e-61 MSLLIALVPMIAWGSIGLVSGKIGGSANQQTLGMTIGALLFSIVVFFVIQPTLTTATLIV GFISGLFWSLGQNQQFHSMKYMGVSVGLPISTGMQLVVNTVAGAVFFHEWTKTKDFVVGF IALAFLVFGVYLTARQDDDSQPKTSNSMLDFNKGIRALIFSTVGYGVYTIIINATGLDPW GIILPQSIGMLVGASFFAFKKVKVDRFVWMNMTTGLLWGLGNICMLLTMREIGLAISFSL SQMGIIISTLGGIFLLGERKSKKEMFYVIFGCIFVILGGILLGYMKA >gi|308151750|gb|GL476272.1| GENE 59 58676 - 60067 1538 463 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 455 3 458 463 422 50.0 1e-118 MSIFRKKEITVPVNDSGGMKKNLKTMDLIFLGIGAVVGTGIFVVTGVAAERYAGPGLVLS FLVAAAAIILSGLCYAEFASRIPVIGGPYAYMYVVFGEIVAWMTGWMIICEFFLAVSSVA SGWSGYVHGFLDSLGFSLPQALSGAYNPTNGTYIDLIAMLIVVAVTFWVSLEAKTALRLN NLMVFVKFGIILLFVLVGIFYVKPTNWQPFIPYGFSGVFSGAALVFFAFLGFDAVSMAAE EVKNPKKDIPKGIIGSIIISTLLYIVVTLVLTGIVPFTDLGVKDPVAFAMRFINHGAIAT IISVGAILTLLTVTIAMMYSLARVIYAISKDGLLPQFMSKIDEKRHTPKNATYVAGFLAM VFAGIVPMEMLAELTNIVTLFYLMFLALGIIKLRTMKGEPQAGEFKVPLVPVLPLISIVV CAALMFQLSLATWQVFGIAVVIGLAIYFFYGRHHSIVRFETKE >gi|308151750|gb|GL476272.1| GENE 60 60255 - 62264 2607 669 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 544 4 547 549 808 71.0 0 MSQKETFYITTPIYYPSGKLHIGNSYTTIACDAMARYKRLMGFDVFYLTGVDEHGQKIEK KAAELNVTPKEYVDKMAADVQKLWKTLDISYDKFIRTTDDYHMAAVQQIFDRLVEQGDIY LGEYEGWYSVSDEEFFTETQLAEVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYAD RLVQYYEEHPEFIQPESRKNEMLNNFIKPGLEDLAVSRTTFSWGIPLKNDPKHVVYVWID ALSNYITALGYGSEDDSLFQKYWPANVQMVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH GWLLMKDGKMSKSKGNVVYPEMLVERYGLDALRYYLLRAIPFGSDGVFTPEDFVSRLNYD LANDLGNLLNRTIAMINKYCDGKVPAYASKVTPFDSELSTTAANVIGKYHEAMEKMEFNT AIAEIWTLVSRANKYIDETAPWVLAKEEEKRNELESVMIHLAESLRIVAILLQPVMTETP GKIFEQLGLDPETMNMENIHFGEFPTDVTVTSKGTPIFPRLEIETEVTYIQKKMSQSESA TEEDIKWNPEETTLVSTKEKQIKYDDFDKVELKVAEVIDCKKVKGADKLLQFRLDAGDEN HRQILSGIAEFYPDPAALIGKKVVIVANLKPRKMRGQISQGMILSAESPEGKLQIVEAPK EMPNGAGIA >gi|308151750|gb|GL476272.1| GENE 61 62364 - 62639 99 91 aa, chain + ## HITS:1 COG:no KEGG:EF0931 NR:ns ## KEGG: EF0931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 91 124 100.0 1e-27 MAYHKFKFYEQRKNDPKWRPYYLEAMRVREQARLTVQRRKRRARIRTFLVVAILVILVFL LLAHWTYSQTNELSFSSFIDVLKSKINEFLN >gi|308151750|gb|GL476272.1| GENE 62 62698 - 63303 511 201 aa, chain - ## HITS:1 COG:no KEGG:EF0932 NR:ns ## KEGG: EF0932 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 201 1 201 201 303 97.0 3e-81 MKQSPDLENFLKTSIQKNVTIERKQQNQTIWHWLLLILFGLLNFGSLTQQLLLIGLFTLI AAIVKGPLMLVWGTIYSALVALFPPFALVLSLLFFIINLDTVMKSWRITLTSAYFYLIPL GFSLLKTTDWVSTPYFLTGLALLSILGLHFILEWLYKNNSLGRLLTWQIISVPFSLLLII LPSRLTKGRFGKKRIPKKVKL >gi|308151750|gb|GL476272.1| GENE 63 63424 - 65622 2192 732 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 726 11 763 774 264 28.0 5e-70 MTDEKIYEQQHLTTVYHELQAAKKVYEEQLANTMKDGKHMLEEFGRDSKLNFDSYADNLE TFAMLEMKNREIDQWNLKNEATAKNLDKVKRLLQVPYFGKIGVTFEDSPEEPENFYIGVN DFTSLEEETRIHDWRSPIASLFYDNVLGKTAYTAHQQTIPVQLDLKRQLIIEKDQLINYF DTTIAIQDDVLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAI MQRIAYLLYQHRAEITADNILLLSPNSTFIDYISQVLPNLGERNPLNLTLLQFLRFTTKE AWPMEEETDYFERITRSEATEQEHVIRSKEFATFLLSNPEKAVVQPHFFRPLTFKKQTLF TSETIFKLYQETPADLSIRQRISATKEKLTSLWTRYLLKQAHSKKMLDQFQDLTEAEQVR YFGTVITEDNEKHLADFALKRLKKKYRSITAAIKNDAWLDQWAFFETFYSLFTEKSYQKE TAVFTADEIVALILVKHAFIENLANQQMAFILVDEVQDYTEAQLLLLLTLFPKASFTLAG DENQAIFNTAIEFSEAHDLLVNETSRSVGTYQLLNSYRSSKKITRLFQTLGTQPEQLTIV PIRHDGEKPTFIPCDSASDYLKAIVTSITTFDSKESTAIITKTFSEKEQLTKELSASLSL EEHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSDNKRDKKILYTAISRGMKRVVLPYTGT LSEWFTPYLAAR >gi|308151750|gb|GL476272.1| GENE 64 65781 - 66551 1081 256 aa, chain + ## HITS:1 COG:SPy0260 KEGG:ns NR:ns ## COG: SPy0260 COG0084 # Protein_GI_number: 15674440 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pyogenes M1 GAS # 2 255 21 274 274 317 60.0 2e-86 MIFDTHTHLNAEQFNDDIPETIAHAQELGVTEMAVVGFDEPTIEKSLLLSQEYANIYSII GWHPTEADSYTPEVERRLQEQLTLPKIVALGEIGLDYYWMEDPKEVQEKVFRRQIAIARE MNLPFSVHTREALEDTYRILKDEKISDIGGIMHSFSGDAEWMKKFLDLGLHISFSGVVTF KKALDVQEAAMAVPLERMLVETDAPYLAPVPYRGKRNEPGYTRYVVEKIAELRQLTFEEV AEQTRVNAHRLFRIDK >gi|308151750|gb|GL476272.1| GENE 65 66560 - 67132 870 190 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 1 189 1 186 186 169 53.0 2e-42 MKVAEIIVVEGKDDTRRIQEVVAADTIETIGSAINDEILTQIEHAQETRGVIIFTDPDYS GEKIRKTIMEVVPDAKHAFLSRKVAVPKKNGGSLGVEHASDEAIIEALKKVVTPVQAGED YQEIPRQTLVEYGLIAGANAKKYRELLGDDLRIGYTNSKQLVKRLSMFRITEAELKESMT RILKELANEE >gi|308151750|gb|GL476272.1| GENE 66 67151 - 68038 972 295 aa, chain + ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 291 3 287 290 349 63.0 4e-96 MTDYKEIATPSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPG IGALTEQLAMNAAQVVAFEIDDRLIPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQE KYPIKVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAV QYFMEASVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKT LWNNLTHFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV >gi|308151750|gb|GL476272.1| GENE 67 68166 - 68783 797 205 aa, chain + ## HITS:1 COG:no KEGG:EF0937 NR:ns ## KEGG: EF0937 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 329 100.0 5e-89 MKTNSVKRLTISALLIAMGIIIPMVMPRITIGPASFTLASHVPVFIAMFISPVVAIAVSL GTGFGFFLSATPIIALRALSHLIFAVIGAVILQKHPEILINKEGKFTLLNGKLQLFNVGI GVIHSAAELVVVSVFYTMGNLPGTYYTAGFMYSIFLLMGVGGLIHSLVDFSIAYFLASTL SKHVDIPTFTEAKQPKVIKKKVKLA >gi|308151750|gb|GL476272.1| GENE 68 68834 - 69937 1510 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 521 68.0 1e-148 MVEMALRNVYKKYDNAEHYSVTDFNLEITDREFIVFVGPSGCGKSTTLRMIAGLEDITEG ELSIGDKVMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYDKAEIKKRVENAA DILGLTEYLQRKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAK LHQRLETTTIYVTHDQTEAMTMADRIVIMKDGFIQQIGSPKEVYNTPKNMFVAGFIGSPA MNFFKVTLNNGVISNQHGLKLAIPEGRNKELVEHGYEGKELIFGIRPEDIHSEQVALTAM KDAVIKSEVVVSELLGAESMLYTKIGDTEFISKVDARDFHHPGEMIDLAFDINKGHFFDP QTEEVIK >gi|308151750|gb|GL476272.1| GENE 69 70123 - 70545 537 140 aa, chain + ## HITS:1 COG:lin2020 KEGG:ns NR:ns ## COG: lin2020 COG1803 # Protein_GI_number: 16801086 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Listeria innocua # 1 129 1 129 134 204 76.0 4e-53 MKIALIAHDRKKTLMIKLATAYKHILEKHELYATGTTGMKVMEATGLPVHCFKSGPLGGD QQIGAMISEDNIDLVIFLRDPLSAQPHEPDVTALIRLSDVYEIPLATNIGSAEILLRGVE AGFADFREVIHEGDRRPLAF >gi|308151750|gb|GL476272.1| GENE 70 70819 - 71358 646 179 aa, chain + ## HITS:1 COG:no KEGG:EF0940 NR:ns ## KEGG: EF0940 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 297 100.0 1e-79 MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTFLKISFTFIPESLIGMIFGPFWAGIGT AVADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL TPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFGKPLSELDQ >gi|308151750|gb|GL476272.1| GENE 71 71410 - 73176 212 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 572 132 356 398 86 28 9e-16 MQTKKIHFGAFSRFKPYLLRYPKEIIGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVN AAQLIKILGLLAGILLVTVLSQWLIQRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTS HGNIVSRFTNDIDNISMACSAVFNQLFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFI VNWLVAKASQKNFAAQQTIVGEISGFVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEK GQKAQFSSSLTNPLSRFIDHLSYLSIGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPF IELSGITNQIQAALAGLERTFDMMDQPVERPDAPNAIVLKEARGRVEFKDVDFSYTPTRP LIENFNLIAEPGETIAIVGRTGAGKSTLVNLLMRFYEVDRGQITVDTHDITQITRDSLRK SFGMVLQDTWLFDSSIRENLTYGNPEASDEEIIEAMKKAHIFDFVMRLPQGLDTEIGSQG VKISEGQRQLMTIARTMISNPPMLILDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHR LATIKSAEKILVMDNGQVVEIGTHDELLQKEQGYYRDLYEAQFNQKAQ >gi|308151750|gb|GL476272.1| GENE 72 73166 - 74893 183 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 347 555 19 224 305 75 27 2e-12 MFGLLKYAKNYRKQIILGPVFKFLEACFELVLPLFMAHLVDVGIRQNDRQTVIEMALWML VMSLVGLFFVMICQYYASVASQGFGTELRNQLMKKINQLSHKELNSFGTDTLITRITNDI NQLQLALAMFIRLVIRTPFLSIGSVVMAFYIDVQMGFLFLLLLPIFSLILFIIIKVTVPL YQKVQEYLDRLNRQISQNLSGVRVIRAFARKETEQRHVDKASDDLGDIYIRVSNVSALLT PLTTLIMNVGILFLLYFSGLKVSFGSLQQGEVLALINYMNQMMLALIVASNLVVIFTRAA ASANRVNEVLTVESQLTDTPESAKTSPQFGDITFDHVDFRYEPEAGLALENINFTIPKGS ILGITGPTGSGKSTLTQLIPRFYDVSAGNLFINGVNVRDWPLFTLRQQVASVPQTAVLFT GTIRENLQWGKPNATDEDCWEALAIAQCKEFVEQLDQGLDTPVNEGGKNFSGGQRQRLTI ARALIRKPHLLILDDSLSALDYQTDLNLRRALQKERAETTVILISQRVSSIATANQILVL DSGKVAGLGTHEELLTSSKEYQEIVASQEEDTHAN >gi|308151750|gb|GL476272.1| GENE 73 75019 - 75786 507 255 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 235 3 249 270 198 37.0 8e-51 MEKMSQIILLFFIYSFIGWLWETVYCSLKAKKFVYRGFLVGPYCPIYGFGVLSVLYFVEP FENNLLVLYVGSAVLVTILEYVTSYGLEKLFHASWWDYHDVPFNLNGRVALPVSLFWGLG CVLIVKVIQPEIAKVVSFLQATFGNYLALCIVIVMGLDLIYTLLNMQGFKKLITEMGQTL ETNQQEFKQRLNTKMEIATADWQKLKERTKKEHFQNRLNFQQRRFINNYPKLTLKNIKNS KEVRHLLEDLKKKGQ >gi|308151750|gb|GL476272.1| GENE 74 76039 - 77256 1394 405 aa, chain + ## HITS:1 COG:lin0225_2 KEGG:ns NR:ns ## COG: lin0225_2 COG3584 # Protein_GI_number: 16799302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 313 404 1 89 91 103 56.0 6e-22 MDLVKVKKLIPFLTTMMLINFGLPVAAAAESLDSLQEKEAQAKQSGELISKEINSALDDV NAKYAEIERLKTQISKAEDTLKTSKEEIEKTEKNISRRKEAVGDRMKDIQLNGDQRTWQA LLDAENLSDFFNRAYAMTVLQNFEREKIESLTSEKEKLAALQEKVENTQTTLKQNEEKLQ VEASSMNNKVSELKEKMANNEELLAQISTDKQKEQQRLVSEKAAAEAQKKRAAETAKAEA AKKQAAADKQAQADAAAKLEAEAAEESSSQASSSSTSTESSSTESSSSASSSESSSTPES STGESSTPGTGSGRVLQMESTAYSWREAGASNLSATGIDLSKESNVVAVDPSVIPLGSLV KVSGYGFAIAGDTGGAIQGNIIDVHFDSVDQCRLWGRRQVTVEIQ >gi|308151750|gb|GL476272.1| GENE 75 77353 - 77916 919 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 172 47.0 3e-43 MIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVY EHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDE RFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLY NHMQKEV >gi|308151750|gb|GL476272.1| GENE 76 77962 - 78486 453 174 aa, chain - ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 159 1 159 162 66 27.0 2e-11 MSEFFIQEQQLGKVTRTIVKDQAGRSLFLLVGRWGTRGDALSLYAMNGEILASIKQVSWT FGTRFELYQRFEKVGTLRKLFNLNADFYYVQGLHWAVVGDIKAHQYSIYQVHKKIMSMDK TMLCTGDYFVLTVANDEDAPLCICIAAVLDYWLYNKKKQKTSDDFGLDFDPLTD >gi|308151750|gb|GL476272.1| GENE 77 78538 - 79407 1016 289 aa, chain - ## HITS:1 COG:BH1746 KEGG:ns NR:ns ## COG: BH1746 COG0561 # Protein_GI_number: 15614309 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 2 281 1 277 282 172 38.0 5e-43 MIKLIASDMDGTLLDAKMSITNDNASAIREAERLGIEFMVATGRAYTEAKPALEEAGIDC AMITLNGAQVFDKDGHSLFTAGIEKETVTEVLTILSQHNVYYEISTNKGIFSEHQEKRIE NFAAHIAESMPHLTYKVAIAMASAHLSLLHITYVDRLDDILKDDSIEVLKIIGFSMDGPK VLGPAGMEVEELDDLVVTSSALNNIEINHRLAQKGIAVARVAKERGIPAEQVMTIGDNLN DVSMIQWAGVSFAMGNAELELKEYAKYETATNLENGVGEAILRAIREDL >gi|308151750|gb|GL476272.1| GENE 78 79541 - 80221 809 226 aa, chain + ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 311 69.0 5e-85 MKEIIHNSWQTVLSAEFEKPYYQELREFLKKEYQTQTIYPDMYHLFSALELTPFEEVKVV ILGQDPYHGPNQAHGLSFSVQPGVKVPPSLVNIYKELQADLGYQPVNHGFLESWAKQGVL LLNTVLTVRAGQAYSHRGKGWEQLTDVIIEKLNEREKPVVFILWGRPAQEKIKMIDTTRH VIIKSPHPSPLSAHRGFFGSRPFSQANAALERLGETPIDWQLPETV >gi|308151750|gb|GL476272.1| GENE 79 80377 - 81360 1272 327 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 421 67.0 1e-117 MELFDSLKFKVVRRNIKIVFPEATDPRILGAAARLKSDELVEPILIGDPTDIANAAMARG INTSNFIIINPNDYEKWDEMVEAFVERRNGKATKEDAEKILKDVNYFGTMLTYMGIADGM VSGAIHSTGDTVRPALQIIKTKPGVSRTSGAFLMIRGRDQERYLFSDCAINVNPTAQELA EIAVDSAKTAELFDIEPKVSLLSFSTKGSAKAPEVTKVAEATKIAQELAPEYAIDGELQF DASYVSSVAQLKAPNSKVAGEATVFVFPDLQSGNIGYKIAQRLGNFEAIGPILQGLNKPV SDLSRGANEEDVYKLSIITAAQTLMND >gi|308151750|gb|GL476272.1| GENE 80 81518 - 81997 623 159 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 7 139 10 140 158 148 54.0 4e-36 MNIVLNNPLETEAIAQIIGQKAQAGDVIVLTGDLGAGKTTMTKGIALGLGISQMIKSPTY TIIREYPQGRLPLYHMDVYRVEEGADELGLDEYFEGDGLSVVEWGSLIEEELPEDYLEII LNKDSQEADKRVLEFRGTGPLAEERIAEILKTWEAREYD >gi|308151750|gb|GL476272.1| GENE 81 81990 - 82511 216 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase [Chitinophaga pinensis DSM 2588] # 4 164 9 170 181 87 28 3e-16 MTEQTFSIREAVPTDADQLLSVMSKIGSETPYLVMDERGMAMSTAELAENLATLYESPNN VLLVALAGEAIIGTASVSASSKKRMEHIGEIGISILKQYWGYGLGSILMEELIRWAHESH VIRRLELTVQDRNQRAIHVYKKLGFETEAIMPRGAKTDQGEFLDVHLMRLLID >gi|308151750|gb|GL476272.1| GENE 82 82681 - 82890 311 69 aa, chain + ## HITS:1 COG:no KEGG:EF0953 NR:ns ## KEGG: EF0953 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 105 100.0 6e-22 MAKATKMNVNYRESILDRAYRLELIKKDEYAKHQEKLSLLNEKLSDGEPAQFDAKEETFW KKISQKVIL >gi|308151750|gb|GL476272.1| GENE 83 82964 - 83974 1022 336 aa, chain - ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 332 2 334 339 280 44.0 2e-75 MAITVKDVAKKAGVATSTVSRVINDHPSISESPKKKVRKVMDDLGYVPNMTARNLGKRIS SAIGVILPPLDSKERLGNPFYLEIMEAINEEARLYDMTTAIATAKSFDVLLENVKRMHLQ KQVDGFILVYSDSKDPVIDYLYENNIPFTLIGQPYQHETEIVYVDNDNQLLGKQATEFLI ENGHKNILFVTNTTHESLYFERYFGYQKAMMMQGLTVLPSVALEKPEDYMAFDDILHQNN ATALVVIDDIFALRTMQLAQIYGYQVPETLSIISFNNSIFSTLTHPYLTSIDIDTSELGR MAMKKLYELIHEELTNGVRLVIPHKLIKRETVIPIH >gi|308151750|gb|GL476272.1| GENE 84 83998 - 85005 329 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 27 331 29 341 345 131 29 2e-29 MKDNRITVTDIPNTNLKKITLKNDFLEVVLLNYGARLHQLLMPNKNNHWENILLSYDSYQ DVLKDQSFFGATVGPVAGRIRNGHWQNGILEQNSDSHHIHGGSKGWSFQYWTVEPFEKKD IIGVAFHLTDTISGYPGPIEATITYQLEDNHLRMISTGRSKQETLFNPTNHAYFNLSGDG KLDILSHLLSLNCQGMLELDDNKLPTGRILPASELSIRFNELTPIETILQRYPTGLDDVF PLVGSDLRQPQLCLQEPTSGRKMTIATTNQSMVLFSTTGFEAPFSINGQAMHSNYGLAIE PQEYPDIVHHPQWGSILLPANKKQTYQTVYQFNLL >gi|308151750|gb|GL476272.1| GENE 85 84995 - 85663 710 222 aa, chain - ## HITS:1 COG:L0001 KEGG:ns NR:ns ## COG: L0001 COG0637 # Protein_GI_number: 15672411 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 1 221 1 220 221 275 64.0 4e-74 MFKGVLFDLDGVITDTAEFHYHAWKKLGNEIGISIDRVFNEQLKGVSREDSLQLLLKYGK KEGTFSSEEFAQLAQRKNDYYLEMIQAITPEDVYPGILSLLTELREANIKIALASASKNG PFLLEKMQLTPLFDAIANPADVQAGKPAPDIFILAAKEIDLTPAECLGIEDAKAGIQAIL ASGAQPVGVGRKEELGEGLPIVPETSALTFDYLKKVWLDHEG >gi|308151750|gb|GL476272.1| GENE 86 85656 - 87950 2277 764 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 6 759 4 752 752 938 63.0 0 MKQIKRLFQIDPWKIRTTHLDKENLRLQESLTSIGNGYMGMRGNFEEHYSGDHHQGTYLA GVWYPDKTRVGWWKNGYPEYFGKVINAINFIAMDLQIDGQTIDLATTPYEDFSLELDMQN GVLSRQFTIQTPKNKVRFSFERFLSLEKKEAAYIHLTIEMLEGTGTITLHSKLDGDVQNE DSNYEEHFWEEIAIETQETLGFVTTKTIPNNFEIERFTVTAGMRHFIDGASVVPTYTQQP LALTAELTVSLNEGETTAITKEVLVVTSRDVPETQQITRVNELFSEMTTLYPEAKAGQAA AWAKRWQLADVVIEGDDEAQQGIRFNLFQLFSTYYGEDDRLNIGPKGFTGEKYGGATYWD TEAYAVPLYLALAKPEVTKNLLKYRHNQLPQAIHNAQQQGLKGALYPMVTFTGVECHNEW EITFEEIHRNGAIAYAIYNYVNYTGDQDYLKDAGLEVLVAIARFWADRVHFSQRHKQYMI HGVTGPNEYENNINNNWYTNTIAAWVLRYTRESYLKFQEETTLKIADDELAKWADIVENM YFPVDNELGIFVQHDTFLDKDLMPVSDLPLSELPLNQHWSWDKILRSCFIKQADVLQGIY FFNDAFSLEEKRRNFNFYEPMTVHESSLSPSIHAVLAAELGMEEKAVEMYQRTARLDLDN YNNDTEDGLHITSMTGSWLAIVQGFAQMKTDHQQLKFAPFLPATWTAYSFHINYRNRLLF VEVAADQVAFTLLDGPAIPLTVYDQKYTLKDRLVLPIRKEEVHV >gi|308151750|gb|GL476272.1| GENE 87 88231 - 90399 2729 722 aa, chain + ## HITS:1 COG:SPy1986_1 KEGG:ns NR:ns ## COG: SPy1986_1 COG1263 # Protein_GI_number: 15675776 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 2 454 6 457 472 655 71.0 0 MKKMFSFEFWQKFGKALMVVVAVMPAAGLMISIGKTLPLIDPNLGLLVTTGGVLESIGWA IIGNLHLLFALAIGGSWAKDRAGGAFAAGISFVLINRITGAIFGVTNEMLADEQAFTHTL FGTKIMVKGFFTSVLEAPALNMGVFVGIIAGFVGAMAYNKYYNYRKLPDALSFFNGKRFV PFVVILWSTIVSIALALIWPNIQAGINNFGLWIAQSQDSAPILAPFLYGTLERLLLPFGL HHMLTIPINYTQLGGTYEILSGAQAGTQVFGQDPLWLAWATDLVNLKGAGDMSKYQFVLE NWTPARFKVGQMIGSSGILMGMALAMYRNVDADKKAKYKSMYFSAALAVFLTGVTEPLEF MFMFAAVPLYVIYAVIQGAAFAMADILPLRVHSFGNIELLTRTPLAIKAGLGGDLINFVL MVIIFGVVTYFLANFLIKKFNYATPGRNGNYDNDNGEEIASGAADSGVVDQQIAQIVYLL GGKQNIKEVDACMTRLRVSVKDREKVGSEEAWKRAGAMGLIVKDNGVQAVYGPKADVLKS DIEDLLASGVDIPEPVIAESTTGVPATNFLGKKKDFVAVATGEVIPMAQVNDPVFSQKMM GDGFAVKPLEGEVVAPISGKVLSVFPSKHAIGLQTEEGIEVLVHMGIDTVEMATPAFESF VKEGQSLKAGTKLAKMNLDVIEQAGKETTIIVAFTNSDKVEQVVINQLGTTTAGTVIGQI EI >gi|308151750|gb|GL476272.1| GENE 88 90465 - 91289 835 274 aa, chain + ## HITS:1 COG:SPy1985 KEGG:ns NR:ns ## COG: SPy1985 COG3568 # Protein_GI_number: 15675775 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Streptococcus pyogenes M1 GAS # 3 273 4 269 272 214 40.0 1e-55 MNLLTINTHSWLEEEPLKKLEEIAKVILSSESEIIALQEVNQKVASKKVPLEQLTTFCPI ATQTPIHEDNFAYLIVQYLAEKGQHYYWSWEMSHIGYAIYEEGNALLSKCPLTSEALLIS ESQEPTNYRTRKILVAETESSKGTLTVVSGHFSWWETPCTGFAYEWLQLEKYLAMGQQPL VILGDLNNPAGTTGYQLVENSYLPIQDAFVVAEETSGEATVEKKIDGWEENEAALRIDYA FVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQLK >gi|308151750|gb|GL476272.1| GENE 89 91349 - 92164 1040 271 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 267 4 262 262 179 42.0 5e-45 MKISFIGAGNMASAIAKGALKKQFIAAENLYFYDIQVEKTAAFAQEIGAHAVASPQEAIT VADLVILAVKPQFVQAALLEAKEAILDKQPLIVSIAAGTTIAELYQLFETTQPLRLVRVM PNMNALIGAGAAAVCGNAFASPEDIQTVLSLFRAVGQAWELEEQYFSIFTAIAGSTPAYA FLFIDSIARAAVKNGMNKELALEIATQAVLDSAQTLANSTENPWTLIDQVSSPGGTTVAG IVELENNAFISTVIKGIEATILRDQELAKQD >gi|308151750|gb|GL476272.1| GENE 90 92291 - 93253 617 320 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 190 309 141 254 257 85 41.0 1e-16 MASKEEQYAAFYQFLETLDCYLTTTNALENEVAQFKENPHREIAGFMLASSETIDVPKGF IRMLYCLEQDGYAYLDQQRCSFSAGQVMIVNEATSVSYQGQGMSMIIFYFKKHYFLDTLL NQLAEEPVMYRFFTEIASSEFENIPRYFVFASQPNSDVHVYSLLLLKQIVKMAYFNNKVT KAAFVLLVVELGQLPREALKMQDNYLSNHQRVEVILAYIEQQIAHVTLAEVAAKFHFHPN YLSNFLKEKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQDKAFFYKRFKEEM GMTPKQYRQKEGMADVRRSL >gi|308151750|gb|GL476272.1| GENE 91 93234 - 93533 344 99 aa, chain + ## HITS:1 COG:no KEGG:EF0963 NR:ns ## KEGG: EF0963 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 147 100.0 2e-34 MYEEVFEEFQLTVVELPIEFVDDLPVYRGHLKELTFLSAEASSRKKLYQQLLQAYLLYRE ENQAVVEEEEITSSLLSTEQLLKYYDGETFDGFQLPSNE >gi|308151750|gb|GL476272.1| GENE 92 93550 - 93840 348 96 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 6 96 10 101 101 107 64.0 4e-24 MDTMAKINQFRDERNWRPHHNEKDLALSICLEAAELLELFQWKTAEEGIKQEERIKEELA DVLIYSYMMADNLGFDLDEIIEEKLKKNALKYPVPH >gi|308151750|gb|GL476272.1| GENE 93 93995 - 94315 57 106 aa, chain - ## HITS:1 COG:no KEGG:EF0965 NR:ns ## KEGG: EF0965 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 106 132 237 237 137 98.0 1e-31 MISIQYILIVALISFLSANVLLSIGFSILYWITTVLFVAIGGFLRFFAIFDASNELYLNV QNFLEGSENSISFDHNLLIILYIIVLTVIALAIARVNNKRWLRLGV >gi|308151750|gb|GL476272.1| GENE 94 94312 - 94707 216 131 aa, chain - ## HITS:1 COG:no KEGG:EF0965 NR:ns ## KEGG: EF0965 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 128 1 128 237 154 100.0 9e-37 MELKKTISNKIMIILIAIIVAIFAMGWILPIGIDKVTRLSYREYLFSTYTVFTQFGFLMF SFLVSFFINKEYSGKTILFYRMMNTNSLTFYIKKVLTLTVETLGSILVLLFIVSFIFMDF SVILQMFFYYR >gi|308151750|gb|GL476272.1| GENE 95 94712 - 95344 489 210 aa, chain - ## HITS:1 COG:Cgl0491 KEGG:ns NR:ns ## COG: Cgl0491 COG1120 # Protein_GI_number: 19551741 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Corynebacterium glutamicum # 2 191 5 215 264 64 25.0 1e-10 MLELNDYTLKINNKLLLEHTKVSFRKGVINHILGKNGVGKSQFAKDLLLNRSGLIPSEIS KNVTIISSFSNVPNDLKVCELFILLEKRFGLDSVAHLAHSLHATNISKTSLIGQLSDGQK QKLKLLSFFLEDKSIIVLDEITNALDKQTINEIYLFLLAYIKNHPKKIILNITHNLSDLK NLKGNYYLIEDFKMIRFTNQTEVIQKYIEG >gi|308151750|gb|GL476272.1| GENE 96 95355 - 95504 63 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257086304|ref|ZP_05580665.1| ## NR: gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis TX2137] # 1 49 202 250 250 76 95.0 8e-13 MLNSDGYKVLNTLFSVDELENKRKNHLIVKLIQAISLLLVIETVISWFV >gi|308151750|gb|GL476272.1| GENE 97 95852 - 96628 708 258 aa, chain + ## HITS:1 COG:all0345_1 KEGG:ns NR:ns ## COG: all0345_1 COG0789 # Protein_GI_number: 17227841 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 113 21 133 135 70 32.0 3e-12 MYQIGQFAKLMDISPRMLRHYEKAGIFVPNEIDKKTGYRYYSAHQIPLLKQILLLRDSGF KVEEMAETLRKLKDASFLETILLRKRDQSRHLIQMEEQKIKKINQQLVALKEEKQMIKGT EIDFIVSDSLKALALYKKVFEIEVVEATEYPVGMNEAVFQLYGTRFHMLDANEEYGLKSP TQEHPNTIWFNITVENIEETHQLAMENGCQEVQPITEMMEGALKNSLFIDPYGYMWMLHQ IYQELSFDERIEILENEL >gi|308151750|gb|GL476272.1| GENE 98 97386 - 97694 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 [Enterococcus faecalis V583] # 1 102 1 102 102 204 100 3e-51 MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEG TVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA >gi|308151750|gb|GL476272.1| GENE 99 97727 - 98071 563 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546816|ref|ZP_04435541.1| possible ribosomal protein [Enterococcus faecalis TX1332] # 1 114 1 114 114 221 100 2e-56 MIKGSFKRTGSGRIVSFELTGHAEAGPYGSDVVCAAVSALAISTVNGIDALAGFEPIVEV EDVEGGYLYVEMLTTVNQEQKNIAQILLENLLLGLQSIENENTEFIQIKTITEK >gi|308151750|gb|GL476272.1| GENE 100 98084 - 98371 485 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 [Enterococcus faecalis V583] # 1 95 1 95 95 191 100 2e-47 MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNV GIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN >gi|308151750|gb|GL476272.1| GENE 101 98610 - 99023 496 137 aa, chain + ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 2 111 17 126 135 65 35.0 3e-11 MILDIVLGILGVFLLVFMASYLVDLATYLMKPMTPDNFSVIMQEIISFFMLFEFIMMILR YIQEGHHIPIRYLILICLTAILRQLMVAHGDGLQTLLLSLSILLLVVVLFILGLNGSKFY TLGKAKVEEDHEQDFHH >gi|308151750|gb|GL476272.1| GENE 102 99094 - 99909 737 271 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 5 267 10 276 278 186 38.0 5e-47 MNVYLFLALFFIIIGILSYSFFIEPNCLVIHKNQIKVTESGKTLRIVQLSDIHLKKNYSV KALKQIVEKTNILQPDIVVFTGDLFDDYARFGIEIQDEVSQLFRKINAPYGKFAIYGNHE YSGLDTNFYETILEAADFTVLKNTGKLLPVSHRISLYVAGLEDSLYGQTDLAAALVNRPT GTPTLLLTHEPDVADSAVNKNIDLILAGHSHGGQIRLPFFTYKNQLAKKYTHGLYHLEDE TPLIVHPGIGTTKISARFGVLPTIELIELTI >gi|308151750|gb|GL476272.1| GENE 103 100081 - 101145 1574 354 aa, chain + ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 2 354 1 353 353 428 58.0 1e-120 MMARVEKLRELMKENNLQGFLVTSPYNLRYLTNFTGTTGLAMITLDKAFFVTDFRYTEQA AEQATGFTIVKNTGHIFDEVADLAERLQLDNLAFEETQVSFADYSLLEEILPCELVPVMG LIEELREVKDEEEVAIIEKACAIADQGFAFVLEMIKPGMTEIEVANQLDFFMRSKGASGV SFETIVASGLRSAMPHGVASHKVIEKGELITLDFGCYYEGYVSDMTRTFAIGSIQTKLKE IYDIVLEAQLKVLAEAKPGLTGIQLDAIARDHIASYGYGDAFGHSTGHGIGLEIHEGPNV SFRADKQFVPGNVITDEPGIYLPGIGGVRIEDDLLITAEGNRVLTHAPKELIIL >gi|308151750|gb|GL476272.1| GENE 104 101159 - 101479 436 106 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 103 1 103 106 99 48.0 1e-21 MDIQEYQRFISAFYKKRNWYQYDPFIRSNFLTEEVGEVCRAIRTIEIGRDRPDETVLADE ENLENLTEELGDVLDNLFILADKYDISLEMIMQKHRTKLMERYPEE >gi|308151750|gb|GL476272.1| GENE 105 101812 - 102243 762 143 aa, chain + ## HITS:1 COG:SP0434 KEGG:ns NR:ns ## COG: SP0434 COG1302 # Protein_GI_number: 15900352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 13 136 5 125 129 114 50.0 8e-26 MSEEKNLVINANDSLGEIVIAPEVIEVIIGIAASKVEGVYGMRGTFANNVNELLGRAAHG KGVYLRTEEEGLKVDIYCYLNYGVSVPKVALEMQDRVKQQVLFMTDIDLVEVNIHVVAVV PEKIPQPDLNELFPEDEDGEENE >gi|308151750|gb|GL476272.1| GENE 106 102236 - 102688 599 150 aa, chain + ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 7 140 8 138 150 105 44.0 2e-23 MSKTELTRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL LVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAV ELSKKYSDDRSRKFVNGVLSNVMKEIDSEA >gi|308151750|gb|GL476272.1| GENE 107 102792 - 103637 1130 281 aa, chain + ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 278 285 363 66.0 1e-100 MSTVINGRELADQMQAEIQKDVEKMTQQGIQPGLVVLLVGENPASQTYVRNKERAAAKIG ILSKVEKLPETISEEELLAEIDKYNQDSRFHGILVQLPLPKHIDEEKILLAIDPKKDVDG FHPMNLGRLFVGKPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMK NATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGMNRNQEGKLIG DVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKKQK >gi|308151750|gb|GL476272.1| GENE 108 103647 - 104993 1505 448 aa, chain + ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 4 439 3 417 417 380 50.0 1e-105 MTQQYLTVTALTKYLKRKFDADPYLGRVYLTGEISNFRFRANAHQYFSLKDDHAKISAIM FKSAFQKLKFQPKEGMKVMVVGRISLYENSGSYQIYIEHMEPDGVGALYQALAELREKLG KEGLFEGPKQQLPRYPKRIAVVTSPSGAVIRDIITTVKRRYPIAQLVLFPTLVQGEQAAD DIVRNIQRADAQGDFDTMIIGRGGGSIEDLWPFNEEKVARAIHAATTPIISSVGHETDVT IADMVADVRAATPTAAAELAVPVLNEELLRISERRSRLEQSFLYLLQQRTERFQRLQNSY VFKQPERLYEGQTIKLDRMTQRLFQAMTTIHHQKQRQAQGIIAQLQQQTPKGQLRESQQQ LAFLQRNLQTQMTQLFLNKQKQFTSAVQQLDLLSPLKIMGRGYSYTTKEDRVVKTVTELQ PADQLTIHYADGTVQANVETITAKKEEF >gi|308151750|gb|GL476272.1| GENE 109 104995 - 105225 466 76 aa, chain + ## HITS:1 COG:no KEGG:EF0980 NR:ns ## KEGG: EF0980 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: E.faecalis # Pathway: Mismatch repair [PATH:efa03430] # 1 65 1 65 76 79 98.0 4e-14 MPAKEKTFEESLNALEEIVQRLERGDVPLEEALVAFQEGMALSKQCQDTLEKAEKTLTKM MTENNKEIVFEESEEA >gi|308151750|gb|GL476272.1| GENE 110 105225 - 106106 1215 293 aa, chain + ## HITS:1 COG:BS_yqiD KEGG:ns NR:ns ## COG: BS_yqiD COG0142 # Protein_GI_number: 16079484 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 265 1 271 272 221 50.0 1e-57 MTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM ETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF QLLSLSQLGLSEKVLLMQQLAKAAGNQGMVAGQMGDIEGEKVSLTLEELAAVHEKKTGAL IEFALIAGGILANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR >gi|308151750|gb|GL476272.1| GENE 111 106120 - 106935 869 271 aa, chain + ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 269 3 272 274 350 66.0 1e-96 MKKERVDVLAFNQGLFETREKAKRSVMAGLVYNDKNERLDKPGEKISVETPLHTKGQVMP YVSRGGLKLEKALNVFAINVQGKTMLDIGSSTGGFTDVALQNGARLSYALDVGYNQLAWK IRQDERVVVMERTNFRYSKPEDFTKGVPDIATIDVSFISLRLILPPLHDILKKGGSVVAL IKPQFEAGKEFVGKKGIVRDPETHQMVVEEITRFAMNNGYDVKNLDYSPITGGEGNIEFL AHLVSVEGEGSYQATESIEEVVAHAHQKLAE >gi|308151750|gb|GL476272.1| GENE 112 107074 - 107523 500 149 aa, chain + ## HITS:1 COG:BS_ahrC KEGG:ns NR:ns ## COG: BS_ahrC COG1438 # Protein_GI_number: 16079481 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus subtilis # 1 149 1 149 149 117 40.0 8e-27 MRKQDRHRLITRLLTEKNIQKQEDFVNYLQEKGVAVTQATISRDIKDMKLIKVPSAEGGY RYSLPLETQANTSAKLAKLLKDAFVAAEQMEKYVVLRTIPGNAAACGSLIEKNYQEKLFA VINDDDSVLMITRTEEAAEKLHKELLSYL >gi|308151750|gb|GL476272.1| GENE 113 107541 - 109214 1997 557 aa, chain + ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 557 1 558 563 484 49.0 1e-136 MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGAN KCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKR IGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKEKYTRAYQEYRALEAKVRKRQ KNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRL NEVENRLELIRQMKRKYGDSIETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAH QQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFTELEHLQENGLDGVEFYITTN PGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRVLSEKERVNEIARMLAGSEI TKLTIEHAQELLAMAKK >gi|308151750|gb|GL476272.1| GENE 114 109305 - 109415 190 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDKEQSRFSKITKVVVWLMLIAIVGSTVLTAILSL >gi|308151750|gb|GL476272.1| GENE 115 109483 - 110439 871 318 aa, chain - ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 294 1 292 316 182 36.0 6e-46 MINYLLLKNDYFEPCSPDDEALSWISVESPTEEEIERLVNQYHLPTDYLTGVLDDEENAR VEGFRHEKLQTPTLLLFRYPKASISPSGYLQVETVPIALIATVDNKLITVSNGPNDIVHG IQKEAFTHQDLSIEKALILALSWKMALSFNKNLQALIQQTNKLEGELQVATENSQLYQIM DIQKSLVYFEAALTDNLKVLKRLYSAEIFNHPEKHLPFLRDILIELEQGLNTTKIQLKLV DNISNTFSAIVSNNLNNVMKILTSLTIVLTIPTIIGGIYGMNVKLPFAEHEYSFWIIFAI TTLICVISIRILKKKNLL >gi|308151750|gb|GL476272.1| GENE 116 110714 - 111085 144 123 aa, chain + ## HITS:1 COG:no KEGG:EF0987 NR:ns ## KEGG: EF0987 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 123 8 130 130 170 100.0 1e-41 MVSFSAIMLFWYIFPVIVLFACNFLVSTFSLTERWKIKAPDLAIPFLFIGIHELSKDSYD ESIMPYFVISILLLGVAVALFQAYYYGEILYRRYFKMFWRLTFLLTFVLYVLLILLNISH YLL >gi|308151750|gb|GL476272.1| GENE 117 111117 - 111212 59 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKCPPQLPTPWGFFVIFGGYLIKNIVKTLL >gi|308151750|gb|GL476272.1| GENE 118 111323 - 111805 532 160 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 18 158 1 141 143 206 65.0 1e-53 MGCGRLVLSSGKAGVLAMLMGEYQHNIDAKGRLIVPSKFREELGEKFVVTRGMDGCLFGY PLNEWSQLEAKLQEMPLAKKDARTFVRFFYSAATECEIDKQGRINIPANLRTHASLEKGC VVIGVSNRIEIWSDERWHAFSDEAEENFDELAETMIDFGF >gi|308151750|gb|GL476272.1| GENE 119 111820 - 112776 1023 318 aa, chain + ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 5 315 2 310 312 442 72.0 1e-124 MTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKA LAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGF SYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQP IETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNG RISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSE NNRSRSAKLRIAEKIKSS >gi|308151750|gb|GL476272.1| GENE 120 112793 - 113200 513 135 aa, chain + ## HITS:1 COG:no KEGG:EF0990 NR:ns ## KEGG: EF0990 # Name: not_defined # Def: cell division protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 206 99.0 3e-52 MAELKKVNDFHYEAPEMDQPTVATEQDRKMQEETLPVPALLPKKKLKNVSLLEKLIGVVL VCATIGIAIATIQVRTTIVQTMNDITETQAVIKEKEDNALKLEQERSELSKSDRIKDVAK KQGLENNGDNVRTVK >gi|308151750|gb|GL476272.1| GENE 121 113200 - 115428 2532 742 aa, chain + ## HITS:1 COG:SP0336 KEGG:ns NR:ns ## COG: SP0336 COG0768 # Protein_GI_number: 15900267 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 9 738 9 748 750 498 38.0 1e-140 MSKRHKFKQFMKKKNLNPMNNRKKVGIILFATSIGLFFLFAFRTTYIVATGKVAGVSLKE KTASLYEGSQVVKAKRGSILDRYGNPIAEDATSYSLYVVLSKKYTGQNNEKLYAEKKDFD DIAEILAKYTKLDKKTALKYLNNGIHEDGSTQYQVEFGAGGQNITLETRQKIEADLKKKK ISGVYFNEHPARLYPNGQFASHFIGYTKAANPDDDKEGLVGAMGLEQTYNDILSGTDGRV YFEKDIYGNALPGTVAEEKKAVDGQDIYTTLDSRLQNTLEDLMTQVNEKYEPVSMTAMLM EAKTGEIVAMSQRPTFNPETKQGLDDNGTWQNLLVESPYEPGSTIKLFTTAASMEQGQFN PNELFNRVGGIQVGDVTVNDHDYTRLNGKEYLNYRQAISWSSNIGMVKLEQKMGDEKWME YLKKFGFGTSTHSGLSGESAGKLPGTNFVDRAMSAFGQAITVTNFQMMKGFSAIANDGSM LQPHYISKIVDKNTGKETITEPQIVGTPIKAQTAQQIRTYMIDTVEDPTYGIAYDIYKVP GYHVAAKTGTAQISDGKGYVDGASQVLSSVVEMVPADNPEYVLYITLRQAKSGSPSEAMA AIANPLMKLALDIKETDPETTKVASDKVTVADYKNMTPAEALANAKVNGVDPVIIGDGEK IKKQSTPSGQTLMPNQKLILITNGTNYMPDLTGWSKSDVTKFGDLLGLTVEFKGEGYVTK QSIAAETEITEKKLTVTLEGTE >gi|308151750|gb|GL476272.1| GENE 122 115456 - 116421 1030 321 aa, chain + ## HITS:1 COG:SP0337 KEGG:ns NR:ns ## COG: SP0337 COG0472 # Protein_GI_number: 15900268 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Streptococcus pneumoniae TIGR4 # 11 321 9 324 326 295 55.0 5e-80 MEWTQIFIPIVVSFAITVSVMPLFIGYFQMKKQGQVTREDGPTWHSVKTGTPTMGGVVFL VASLITSLAMGLFFHQFTPSLLIILFILVLYGLLGYLDDFIKVFKKRNMGLNSRQKLIGQ IFGGLVFYFVYRSEGFSDTLDLFGVAEVPLGIFYGVFIIFWLVGFSNAVNLTDGIDGLVA GLGTISFGTYAIIAWKQQQFDVVIICLSVIGGLIGFFPYNRKPAKTFMGDVGSLALGGLL AAISIILHQEWTLLLIGLVYVCETASVILQVASFKLFGRRIFKMSPIHHHFEMCGWSEWK IDFVFWSVGLICSGITLWILF >gi|308151750|gb|GL476272.1| GENE 123 116444 - 117814 1324 456 aa, chain + ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 1 452 1 449 452 538 61.0 1e-152 MKKITTYQNKKVLVLGLAKSGVSAAKLLHELGALVTVNDAKQFDQNPDAQDLLTLGIRVV TGGHPIELLDEEFELIVKNPGIPYTNPLVAEALTRKIPIITEVELAGQIAECPIVGITGT NGKTTTTTMIGLLLNADRTVGEARLAGNIGFPASTVAQEATAKDDLVMELSSFQLMGIET FHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILNWNQVELQTLAKTTAA NVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNA QIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNILATEMALSGFDNQKLLLLAGGLDR GNSFDELVPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDD TILLSPACASWDQYPNFEVRGEAFMQAVQQLKESEM >gi|308151750|gb|GL476272.1| GENE 124 117819 - 118910 1272 363 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 360 1 359 363 385 53.0 1e-107 MKILVTGGGTGGHIYPALSFVEHVKKEAPATEFLYVGTENGLESQIVPKAKIPFKTIKIQ GFKRSLSPQNFKTIYLFLTSINKAKKIIREFQPDVVIGTGGYVSGAVVYAAHQLKIPTII HEQNSIPGMTNKFLSRYVDKIAICFPDVASFFPKEKTILTGNPRGQEVVTVEKSAILSEF GLDPAKKTVVLFGGSRGALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKLSEK KLTNISVQPYIDKMVEVMANTDLMVGRAGATSIAEFTALGLPAILIPSPYVTNDHQTKNA QSLVKVGAVEMIPDAELTGARLVAAIDDILLNNEKRQQMATASKGEGIPDASDRLYQVVK TLV >gi|308151750|gb|GL476272.1| GENE 125 118919 - 120043 995 374 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 87 327 12 252 270 150 35.0 4e-36 MWKISNENDIFKKRKPLPPKKSEESQPELTPWQKQNQEYLKKQAEEAALKGENEQAEVTI TLQEQSQEEPQQHLPQETVEEEEHFADRLPNVKKTRNKRLYRRLAFILTCLGTAILVALY FVSPLSRLSEVTVSGNKSVESQAIIQQSKLETGSGLWEQYSNRNYFSANIQKKFPIIKKA NIKLNGINSFKIDIQEYQIVALAATKGGYHPILENGKTLAETTKAAESGKPIFENFKEDK LIPELMASYNKLPQEIKQGISEIKYAPSKTNKDLINVYMNDGNRVIVNISDLSEKMAYYS QVAEQMDKPGIVDMEVGIFSYPYEKESEETGSEVSEDSAVENQEVVDPNAGAATDEANNG TPTNGENQEVQQAE >gi|308151750|gb|GL476272.1| GENE 126 120217 - 121539 1575 440 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 440 1 456 456 443 50.0 1e-124 MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRA VRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVCNVASAALVRSTP PERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGI NELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKD ISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVE QILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPV FANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNE RESGEKVTGKIKDFFSNIFD >gi|308151750|gb|GL476272.1| GENE 127 121566 - 122798 1630 410 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 408 1 416 417 437 65.0 1e-122 MEFSLDNNINNGAVIKVIGVGGGGGNAVNRMIEENVKGVEFITANTDVQALKHSKAETVI QLGPKYTRGLGAGSQPEVGQKAAEESEQVISESLQGADMIFITAGMGGGTGTGAAPVVAK IAKELGALTVGVVTRPFSFEGPKRGRFAAEGIALLKENVDTLLIISNNRLLEVVDKKTPM LEAFREADNVLRQGVQGISDLITAPGYVNLDFADVKTVMENQGTALMGIGVASGEERVIE ATKKAISSPLLETSIDGAEQVLLNITGGLDMTLFEAQDASDIVTNAASGDVNIILGTSIN EDLGDEIRVTVIATGIDESKKDRKPHRQTRQAVQPMQQTTQSVEMDQPKSQEEASAFGDW DIRREQNTRPKVDESSLEQVDKKEFDTFHREEPNHNDDELSTPPFFRRKR >gi|308151750|gb|GL476272.1| GENE 128 122815 - 123492 574 225 aa, chain + ## HITS:1 COG:lin2137 KEGG:ns NR:ns ## COG: lin2137 COG0325 # Protein_GI_number: 16801203 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Listeria innocua # 5 224 6 224 229 232 54.0 4e-61 MIAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKL LEKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATKVIRCFV EVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQ MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALFRDA >gi|308151750|gb|GL476272.1| GENE 129 123506 - 124150 694 214 aa, chain + ## HITS:1 COG:SA1032 KEGG:ns NR:ns ## COG: SA1032 COG1799 # Protein_GI_number: 15926772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 210 7 183 187 92 34.0 7e-19 MSIFNKDALSSFFGLSGEEDDYYDNYEEYEERKAVNEPPRRAARPKPQRPVQQQESYNQP AYTQQSEPVVEKPSARYRSAEAHQERDTQQAAYTEKKVVSMRSSNQSATMNTRRAQESTA NAKTHKITIIEPRVYSEAMSIAKHLFAEEAVLVNFTLVEEDQARRIVDFLTGTVYALDGD IQRVGNEIFLCTPANMEIDSATAQSLANKQFFDF >gi|308151750|gb|GL476272.1| GENE 130 124365 - 124436 128 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVGIIVLNLAAGGLAVILRAIVY >gi|308151750|gb|GL476272.1| GENE 131 124463 - 125245 1342 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583] # 1 260 1 260 260 521 100 1e-147 MNANVYQHFRKDEHPFIDTVGDWLEQVEMQYAPYLTDFLDPRQAYILETLIRQNSDLSFT FYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEIIYPSKFATLSHGKILGTLMNVGVRRE AFGDIISDGDKWQVFIAQEVAGFVVNQVDKIGKITVRLEERDYTQILIPKDGWQEERTTM SSLRLDSVISAVFNISRQRSKQLIESGKVKVNWTETTRPDFALDLLDIVSIRGFGRLQIQ ELEGKTKKEKFRVLLGVLRK >gi|308151750|gb|GL476272.1| GENE 132 125256 - 125345 59 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKKTILAVHSDEVVYNKKSKIFAISGLV >gi|308151750|gb|GL476272.1| GENE 133 125397 - 126098 951 233 aa, chain + ## HITS:1 COG:SP1661 KEGG:ns NR:ns ## COG: SP1661 COG3599 # Protein_GI_number: 15901496 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 183 262 124 43.0 1e-28 MALTPLDIQNKDFSTKMRGYNQDDVDDFLDQVTRDYEDALQKNRELEKSLKHAEEKLQYF NELKDALNQSIIVAQDTADKVKSSANKESEMIITSADNQAKETLVEAERKSNAMIADAEA KSTQILAEAIERARQLAGETEDLKKKTRVFHQRLSLMLETQLEQVKSEEWEEILKPFSSY VGDKHTAVKEILDEQDLDNENETVVNSEENTDAVVEKKPVIEVTEETIEEESK >gi|308151750|gb|GL476272.1| GENE 134 126409 - 129189 3391 926 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 926 1 931 932 1360 68.0 0 MKMKETLQLGKTAFPMRGNLPNREAEWQKDWEEKGLYEQRQKLNEGKPTFVLHDGPPYAN GNIHLGHSLNKISKDIIIRSKSMSGFRSPYVPGWDTHGLPIEQVLTNKGVKRKEMTVAEY REKCKEYALSQVDKQRNDFKRLGVSGDWEHPYITLDPEYEAAEIRVFGKMAEKGYIYKGL KPIYWSPSSESSLAEAEIEYKDVKSPSIYVAFNVADGKGLLDNETAFVIWTTTPWTLPAN LGISVNPDFTYVEVKADGRKFVIAKDLLATVKEAVGWEEVEVLREFSGEKLDRMTAQHPF YDRTSLVMLGDHVTLDAGTGLVHTAPGHGEDDYIVSRKYDLPVISPVDSRGVFTDEAPGF EGIFYDKANPMITELLEEKGALLKLDFFTHSYPHDWRTKKPVIYRATPQWFASISKFRQD ILDEVEKVDWLIPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAENGEAIITPETIEH VANLFAEHGSNIWFMREAKELLPAGFTHPGSPNGEFTKETDIMDVWFDSGSSHEGVLRER EELTFPADMYLEGSDQYRGWFNSSITTSVAINGVAPYKSIISQGMVLDGEGRKMSKSLGN TILPEKVINQMGADILRLWVSSVDAEADVRVSMDILNQVSEVYRKIRNTMRFLLANTSDF NPAEHTVAYADLRSVDKYMTVRLNQVIQQIRENGYEKYNFMHIYRTVMNFLTVDLSSFYL DFAKDVVYIEAENDYQRRCMQTVFYQTLVSLTKLLTPIIPHTAEEIWSFLQEEEEYVQLA EFPGYETFTNEEELMDTWAAFMDFRDNVLKALEEARHSKLIGKSLEAKVTVYPNEQIRQL MTAVDADIAQLLIVSDFEVSKEVAPSEAVQFEDMAILVEKAEGETCDRCRSVRQDVGSDE KLPTLCGRCAHIVEENYPEAVAEGFE >gi|308151750|gb|GL476272.1| GENE 135 129241 - 130764 1776 507 aa, chain - ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 3 507 4 503 503 667 64.0 0 MNEKVALFTIFGGTGDLAKRKLYPSLFRLYKKGLLAERFAVIGTARREWTDEYYREIVRE TIQDLNPTAEEATEFSSHFYYQSHNVNDTEHYNTLKELSDRLNEQYHLEGNHVYYLAMAP QFFGTIVNHLKSQHIISEEGFDRLIIEKPFGSDYESAYELNEEIRAAFPEQDIFRIDHYL GKEMIQNISAIRFANNIFESQWNNRYIDNVQITFAESLGVEDRGGYYDHSGALKDMVQNH ILQVVALLSMEPPVAFSEKEIRTEKVKALRAIRLYSEEEALQNFVRGQYGEGQLADQTFA AYRDEPNVAETSSTETFVAGKFLIDNFRWSGVPFYVRTGKRLTEKGTRINIVFKQVPINV FKDDTCEECDKTDLPPNVLTIYIQPTEGFSLTLNGKEIGQGFNTTPVKLDFRQSAEMTEN SPEAYEKLLLDCLNGDSTNFSHWDEVAQSWRIIDIIRHAWDKTDVSFPNYAAGTMGPQAA FDLLEKDGFTWEWQPDNWYRDRGQLDQ >gi|308151750|gb|GL476272.1| GENE 136 130764 - 131432 880 222 aa, chain - ## HITS:1 COG:SPy0450 KEGG:ns NR:ns ## COG: SPy0450 COG1321 # Protein_GI_number: 15674572 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 158 40.0 7e-39 MTPNREDYLKLIFELGGDEVKVNNKQIVSGLDVSAASVSEMISKLVKEDLVEHSPYQGVQ LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKIRIARVLDEKELLDYLVSIDLNIQEEYT IKEIAAYEGPITIYNENKELSVSFKAANTIFVEPLIRESEEN >gi|308151750|gb|GL476272.1| GENE 137 131604 - 131972 302 122 aa, chain - ## HITS:1 COG:no KEGG:EF1006 NR:ns ## KEGG: EF1006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 243 100.0 1e-63 MKKHWTFLVGASLLTGLAGSILWKKNKQLPSPQELQHNYTGHWWFVDVKKATQHTLEITS SFNVFIDGKQTHALLVELTPKRLVILDKLGYHLIIQCENGVPATLYDEADDETYTLERAI YN >gi|308151750|gb|GL476272.1| GENE 138 132171 - 132902 682 243 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 230 1 226 230 189 45.0 3e-48 MKYPNVQLAYFIERPNRFIAHCRLMETNEEVVTHVKNTGRGKEVFLPGAVVALSYQPSPK RKTDYDLIAVKKGSFWINIDSQVPNTLVNEALKNGQIVLPGLVGTIQTVKREQRFAHSKF DFLVETNADEQAFVEVKGMTLENKGIGAFPDAPTLRGLKHVTELMAATKAGYRCYVLFVV QFEEIKQATIHQEMQPAFAENVGAAIDQGVQVLAYNCHVTPATIELKSQVTFDLLQAFDD PNK >gi|308151750|gb|GL476272.1| GENE 139 133008 - 134006 1329 332 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 283 46.0 3e-76 MIHLGVIGTNWISHQFVSAALETGAYDLTAVYSRKLATAQEFGSRYGDVEYAIDLETFFG IAHMDTVYIASPNSLHFEQAKQAILAKKNVIVEKPAFSTPDEMAEIIELANKNRVYFFEA ARNIHEQSFQKIAELLPLKNQILGANFTYMKYSSRYDQVLEGKEPNIFSPHFSGGALADL GVYLVYAALGWFGVPNESHYFASKIATGVDGLGTIILRYDQFDVTLNTGKISDSFAPSEI YFENGTLILDSVNAISSAEYHDRAHEERDVLDIQVADNPMIEEARDFAAVLNNPTDKYWG TKYEEWVELARNVNKVVTDLRHSAGIIFDADK >gi|308151750|gb|GL476272.1| GENE 140 134033 - 135334 1353 433 aa, chain + ## HITS:1 COG:SPy1369 KEGG:ns NR:ns ## COG: SPy1369 COG0513 # Protein_GI_number: 15675301 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 358 361 293 43.0 4e-79 MRFLEQLPEAWQEQWQASGFNEPSTIQEKSFTPLREGENVLGISPTGTGKTLAYMLPLLL TVEKGQGNQLLIIAPSQELAMQIAEVARTWAKPLQLTVQTLIGGANVSRQIDKLKKRPEV LIGTPGRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVFYSA TADRVVNQAQSLSQKLQVIDVTEEDTSAGQVAHYFIRLAPRKKADYLRRLAHTEAFRSMV FFNQVADLGAAEEKLVYENVPAIGLASDQSKQLRKLAIDQFKAERVKLLLTTDIAARGLD FTGVPYVVNVDVPLTEESYIHRSGRVGRMGAQGAVITFINDGTKRDYQRLMKQLAIPYQE IFLYDGALHEQPKAKDELEKKNVAKDTYSEKKSMKERKPETVNSVVKEPQETRKKKKNKK KNTKNKGARKAKK >gi|308151750|gb|GL476272.1| GENE 141 135379 - 138084 2804 901 aa, chain + ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 434 1 432 432 476 56.0 1e-133 MKSRKEEILALLQKNETGLTAGAVAEQLMIDRSNASRYLNELFKEKKITRSTGRPVIYSV PTINEGEQVHVDESTSVSFDTLVGANDSLKVSIQQAKAAILYPPRGLHTIIFGKTGTGKS LFAECMYRFAIDSKTLDEDAPFVSFNCADYAQNPQLLFGHIFGVKKGAYTGANEDSPGLM AKADGGILFLDEIHRLPPEGQEMLFTFIDKGVYRPLGESGQTYEASVQIIGATTESSENF LTTFNRRIPMSITLPSLDARTLDERYAIISLFIQQEATRLGQQIDIEREAVLAFMLYDAE GNIGQVKRDLKLVCAKSFLYYRTHNLEHLVIRKRDLSLPVQKGLLKIKEVPERLDQFVDS KSNYLSFQPGTNKIVWSQDPARDMQVYNEIEEKVADLSEADLENVDLEELISKDMNAYFK NYVEELTQHSLHKELLPEAIWDLTNRLYDIAEERLEHTYNETARFAFALHLQSTIERVKE GHVIVHPDLNNVRKNMKKEFQVALDLSSIIEEENNIEIPFDEIGFISMFLSINVGKEERT PENNVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKE SLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQN IQLSFESVVREQFRSSLQKRQNVKKAVIVTCFTGEGVAAKLYQRILPVIDETKVELIQMQ FIERETFKKHIDNLMEEYEIKAIAGTVDVEYQNIPFFSVYDIFDDEKLNVLKRIASDEVA IDTIVHSLSGVITSVDSLQKLILMLQKTVHQIQTDMHIIVEPGVDAGIMIHLAFLVDALI KGEEARTFPNLAEYVKTHRLEIDVVRTNFMLIERAYRVTIPEAEVAHVTQMFLENEIKSK Q >gi|308151750|gb|GL476272.1| GENE 142 138313 - 138630 492 105 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 120 68.0 5e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMG >gi|308151750|gb|GL476272.1| GENE 143 138772 - 140235 1775 487 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 478 1 445 454 450 56.0 1e-126 MNGLMAWMEKYILPTAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQEFV STYAASLEADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAFSWGYNLAKAYNVNELAGGI VSLATLISGVAFAPNNTAELAVKVPEKIANAINGAEIGASIANNQLTVNPWGWLNLNHLN GNAFFTVMIMGALSTIIFCKLMQADLTIKMPDSVPPAVSKAFAAILPATIALYVVAIINF TVSKLSGGQLLIDLIQKYIAEPFLGLSQGLGAVLIVTVFVQIFWFFGIHGPNVLAPVLEG IWGQAQLINIDIFQKGYEGKTGTAAVLAAIDDGKAYMWVRGSFDAFAWFGGSGGTIVLII AILLFSKRADYLTVGKLSLGPGIFNINEPIMFGLPVVLNPIMFIPFVIAPLVATTIGWVA TYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVCMVVTFLIWTPFVIAANKMDP ALGESEQ >gi|308151750|gb|GL476272.1| GENE 144 140279 - 140497 389 72 aa, chain + ## HITS:1 COG:no KEGG:EF1014 NR:ns ## KEGG: EF1014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MISIASAMKQEEIITLLEAYQGENETFTFKEKNGIKLFFEVEGDPETAAQVAKQLIKEQP WGGVLYFQATVV >gi|308151750|gb|GL476272.1| GENE 145 140517 - 140711 196 64 aa, chain + ## HITS:1 COG:no KEGG:EF1015 NR:ns ## KEGG: EF1015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 112 98.0 6e-24 MIRNGLFLCSIGFLIVLYSLNPSSLNYDLLSLTTGIFFIGLGGYLFFKGKKVAEEEATKD EVKR >gi|308151750|gb|GL476272.1| GENE 146 140711 - 141121 361 136 aa, chain + ## HITS:1 COG:no KEGG:EF1016 NR:ns ## KEGG: EF1016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MEITKTLTISADEFYTQLMNSVIFDIRKQTGKTLTRKQLRKFEYIKEYSKNSRAKIVIEE AVENKTYQFRTSTTKNDFSVRYELQPIDEKSCELRYTETMVSYGALQKLNDAVLGIFLSY FKKKQFYKMLKMMETA >gi|308151750|gb|GL476272.1| GENE 147 141396 - 141722 471 108 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 121 68.0 3e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMGSSN >gi|308151750|gb|GL476272.1| GENE 148 141745 - 142065 458 106 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 8 101 5 98 100 102 62.0 2e-22 MDGQQNLEAIMGLIMYGGNAKSDAMEAIAAAKSGDFELADKKIADAEESLVHAHHSQTGM LTEEAKGNNMQVTLLTVHSQDHLMTAIAFTDLAKEIIDLYRRIDNE >gi|308151750|gb|GL476272.1| GENE 149 142131 - 143408 1635 425 aa, chain + ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 425 1 430 435 522 67.0 1e-148 MDGFVQWMEKHFMPKASVIAAQRHLVAIRDAFVVTMPLMILGALAVLINNIPIPGYEDFL NKIFPMMYNDAPIWKSFGGNIWNGTFAIFAVLVAFLVAHNLVKSYGKDGIAAGTVSVASF FAVGGLEGMGATGLFIALIIALISGELFQRLSGNPKLVIKMPDGVPPAVAKSFAALLPAM ITISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSYPSALLLAFITPFLWFFGLHG ANMVDPLMQTINVPAIDANIKALEAGKAIPYIVNKPFFDSFVNLGGTGATLGLLIAIFIV GRRNKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFIPFILVPMVLVTVAYVATATG LVPAATFMPPWVTPPIIGGFLATKSIAGGVLAAVNLLISILIYMPFVKVATDQYLKQEAA AEAAE >gi|308151750|gb|GL476272.1| GENE 150 143492 - 144886 1968 464 aa, chain + ## HITS:1 COG:BS_ydhP KEGG:ns NR:ns ## COG: BS_ydhP COG2723 # Protein_GI_number: 16077651 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 464 6 465 465 644 65.0 0 MKYQFPENFWWGSAASGPQTEGVFEGDGKGQNIWDFWYQEAPEKFFQQVGPDKTSQFYKK YQEDIQLMKETGHNSFRTSIQWSRLIPDPTTGKVNQTAVDFYNQVIDDLLEHGIEPFMNL YHFDMPMVLQEKGGWESREVVDLYVDFAKTCFELFGDRVKKWFTHNEPIVPVEGGYLYGW HYPDKVNLKEGIQVLYHEALASAKAIAVYHSMNLSGEIGIILNLTPTYPRDEHNEADVNA AKFVDGFFNRSFLDPAVKGHFPEDMVAWAKANDLLPETTPEDLAIIAENTVDLLGVNYYQ PRRAKAKETPVETRPEGLLPEDFYDVYDMPGKKMNPYRGWEIYEKGIYDTLMNLKENYGN IRCYISENGMGVEGEERFVNEQGVIEDDYRIEFVQDHLKWVHQAIQEGSNVQGYHMWTCM DNWSWLNAYKNRYGFIAVDLDDDAKRTIKKSGRWFKEMTANNGF >gi|308151750|gb|GL476272.1| GENE 151 144944 - 146137 1273 397 aa, chain + ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 336 9 332 350 170 35.0 5e-42 MTTKRVKKMGKEEMKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVM ATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAPFSYP FYRQYGYEQTFEQAEYTIKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGV IRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTAFKALA GFIGSHSGSVQSFHWINGFAGKDLNDLMPTPAASVKILPYMMARIVELQTFLEKYPFQSG EKETYSLEIEDSYGPWNEGIWTITIDEQGKATVTKGAAEKEGTAALKADIQTWTQLFLGY RSAETLSFYERLQGDATTAQRLVQRLVKGMPILEDYF >gi|308151750|gb|GL476272.1| GENE 152 146220 - 146339 180 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKTKQEKVARNNKIGQYIAIATGLYYLGKMILDRRQKK >gi|308151750|gb|GL476272.1| GENE 153 146565 - 146897 560 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 [Enterococcus faecalis V583] # 1 110 1 110 110 220 99 4e-56 MAITINIYYSGTNGRAREFAKEMIASGIVEAIRAEKGNSRYEYFFPMDDEETVLLIDSWT DQEALDKHHASPMMTRITELREKYDLHMKVERYVSDVTDPLTKDAAFIRK >gi|308151750|gb|GL476272.1| GENE 154 147011 - 149656 2654 881 aa, chain - ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 857 1 860 879 934 55.0 0 MKKFIYSFNETHNEGKETLGGKGANLAEMTRLGLPIPQGFTITTRCCMDYLADATFFEEH LQSEILKAVKNLETETGKSFTADNEILLVSVRSGAAFSMPGMMDTILNLGLNDQRVKKFA TLTSPGFAFDCYRRLIQMFGDVVYHIPKELFDQQKERLEQELNKKITAFQEADHFALIVR YQEVFEQHQVVFPQDPVAQLFEAIKAVFDSWNNQRAVVYRNLHHIAHDLGTAVNIQEMVF GNRGLDSGTGVVFTRNPVTGENQLFGEFLLNAQGEDVVAGIRTPEPIRRLRLTMPKVYQD FRHYAELLEYHYRDMQDIEFTIENEKLYILQTRNGKRTAAATVKIALDLAKENRITKQEA LLRVTPDTIDQLIHPVFDQEKRQHMERLAMGLPASPGAASGQIVFTAEKAKELTNLGKKV ILVRQETSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTCCVTGCESLTVNEETKQLH CGPQVILEGTIISVDGSTGEIYLGEIPTISADNNDDLQELLSWADAYADLTVRANAETTQ DLETAIRFGAAGIGLARTEHMFFGEERVLEMRRLILAESEKEATYALEQLLHFQQEDFYQ MLKVVQDKPMVVRLLDPPMHEFLPHEKNDIQLLAKQLQRFPVTIAKQIERLQETNPMLGH RGCRLGVTQPQIYKMQVTALFTSAIRLVKEGITVYPEVMIPLIAEKEELLYLKRILKETI DGLFEEHKMTPFPYEIGTMIELPRACLIADQLAEEADFFSFGTNDLTQMTYGFSRDDIGK FINTYREKKIITQDPFQSLDQTGVGQLIQLAVEKARRTKPNMSIGVCGEVGGDPQSITFF QTLGLNYISCSPYRVPIAKLAAAQAKILTEPAVTEEQMVLL >gi|308151750|gb|GL476272.1| GENE 155 149826 - 150455 756 209 aa, chain + ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 204 1 207 207 160 42.0 1e-39 MKLSKRQEQIIAVVKEHQPVSGERISDILAVSRATLRSDLSFLTLSGILKASPKVGYTYE SDNMEAFFFFDVFQTKVQEIMSPPLMVAQDTSIRDAITNLFMYDVGSLYVMDEAKELLGV LSRKDLLRASLNTNIDGTPVAVCMTRVPHVKTCTPEFTILEAADTLQKYEVDSLPVVEKE NPKKVIGKITKTKILTYITQQAKEAAQNR >gi|308151750|gb|GL476272.1| GENE 156 150468 - 151280 992 270 aa, chain + ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 264 270 225 45.0 7e-59 MKKEIIVYTISDSLGETSQKLLAAASAQYPDISFLNRYNFSFVTTEEELLEILKDALKDK ALVVSTLVSKQLITAAKEFSERTGLLYLDLMAPFFELIQAKAGVDPIEEPGRRHQLDRAY FDKISAIEFAVKYDDGKNPQGFLDSDILLLGVSRTSKTPVSMYLANQGYRVSNLPLIPEV PLPPILEEMDPQKMIGLVCSPETLGQIRSSRLASLGLGNETSYTNVERIEQELAYAEEIF AKYGIPVIDVTAKSVEETAFLIKEKLDERN >gi|308151750|gb|GL476272.1| GENE 157 151351 - 153882 2569 843 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 249 837 1 585 613 488 42.0 1e-137 MKQIIHWIKTHTGLLKTLFVIAVSIIVVAQLLSIGKTISFEQLKQIFDEIPLWKLLLMMV IGLVSVTPMLNYDLTLNRILNLKVSKRELLESSWIVNTINNIGGFGGLVSMGLRSEFYGN KTEEKKILPALTHILLFVLSGLSIYSILCFFLVQFDPKMAYLQQYWIWLLGGGLYFPLLY LILHFQKNSSFGNLDAKNRLSLVVSSFLEWTGVLITFISIGYLLDVPIPLIDIVPLYVAA SIIGIASMIPGALGSFDVMMILGLSNLGVDREIIVLWLLLYRLFYYIIPFLIGCLFFTKH LSQKLDTHYRQLLKQITLEIAHKLEVVLLYFSGIMMVLLATIPEAFTQVHWLRDINPFRS HIIIQIPSIVLGFALLIMGRGIADRVKRAYYPTIILLIGAILYSFVVDFSMFSIFYLAIL LFIVIFSKSELYREQLVYSWEWMTIDGFIFGLLTLLYLVIGVYNLPNFPHHRHHFVEFFL FPSERIWLSGFIAILLVMSFNFLFVRYLQGKKHQVGEFPEDSILHNILTTYGGNIDSELV FLHDKQVFLYPKEEPTVFLQFNTINNKCVVMGNPSGNKEDFPAAIDAFLKETDRFGYVPV FYETNEDSVMLLHEYGYEFIKMGEEALVNLETFTMSGKKFKGTRAVFNKITKAGYSFDVL QPPFSAEQMHELKAISDSWLDNRKEKGFSLGFFDEAYLQRNPIAVVRNAEGEMVSFANII PSYTNEVGTIDLMRHHKEKAPSGSMDFLFIHLFEYMKTENIHYFNLGMAPLANVGQSRKS FIQERIAALIYEFGSEIYSFQGLREYKEKFASKWQPRYTLYSKSSWIVYVMIALLIVDQK NID >gi|308151750|gb|GL476272.1| GENE 158 153879 - 154613 591 244 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 240 5 233 239 102 28.0 8e-22 MAIEKYFQTIDGSQIFYQIFGKETNYPLVLLHGNGNDHTFFNYQISYFSKEYQVIAVDTR GHGRSTNTQSQLTFPLLAEDLAGIIQQEHLTKINLLGFSDGANIAMVFTHLYPDFVNKLV LNSGNVTMSGLKKYVTIATYFQYWFCRIGAFFSKKLRTRLPIVALLFEDTGLTKQDLEHI PCPTLVITGSRDLIALSHSRAIADAIPDGKLVLVNKQGHLFAKNSPDIFNKTIEKFLKEM KVSK >gi|308151750|gb|GL476272.1| GENE 159 154790 - 155374 502 194 aa, chain + ## HITS:1 COG:no KEGG:EF1029 NR:ns ## KEGG: EF1029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 344 98.0 1e-93 MSLIVLIGAQAVGKMTVGKALEKQLDAKLLFNHQTIDLFANYLGYTERAFQLSDSVRKEL FHAFVENPATNTTKNIIFTVVIAFDQEQDFQFLEEISEIFLSKHESVYFVELVSSTSIRL ERNVHPERLEAKPSKRDVDFSRKELLNTFKEHRLVSHEGELESTFPNVKITKINNSNMTP EEVATKIIATFGLT >gi|308151750|gb|GL476272.1| GENE 160 155397 - 156452 1045 351 aa, chain + ## HITS:1 COG:no KEGG:EF1030 NR:ns ## KEGG: EF1030 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: E.faecalis # Pathway: not_defined # 1 351 1 351 351 669 98.0 0 MKKFFKYLGSLMVLLLSIALILIGYLTFREFRPRAVEPVAINKQFSEQTIEKHQSISLVT YNIGYAGLGQTEDFFMDGGKTVQPVNKAMVQQNLTGIEGTLKELPAMIYLFQEVDRRSQR SYEVNQEEELQKQLQLNSAFAYNFKVDYVPIPWPPIGRVESGLLTLSNEKITEAKRIALP NPFRWPVSISNLKRALLETRFPIEGTDKELVVFNLHLEAYDNGEGKIAQSKKLADVLSQE YAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLAYDDQQPTVRVLN KPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQFKYTDHQPVKMEVGLK >gi|308151750|gb|GL476272.1| GENE 161 156469 - 157125 498 218 aa, chain + ## HITS:1 COG:BH3238 KEGG:ns NR:ns ## COG: BH3238 COG0775 # Protein_GI_number: 15615800 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 3 205 4 218 233 94 30.0 2e-19 MKLGVIAAMDLELQKLLEYFPPQRKIQLAKNTFYIYEQKTSQVIMVCAGQGKTNATLYSQ ILIDSFQIEQLINIGICGCLNEKLQLFEMVLGEEYCHYDIRERQSINKFPYQLYYKGDKG MLAELQHLDEKIKCVRFGTGEGFVCDTTEKRNLIEQFSIDCVDMESAAIAQCCFLNDCAF VSIRIICDRADANAVKVTEDTQIQAMEKVFELVCAYIN >gi|308151750|gb|GL476272.1| GENE 162 157229 - 159466 1456 745 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 745 8 750 755 801 51.0 0 MEWIEIKHASQNNLKNISVNIPKKQLTVVTGLSGSGKSSLVFDTLAAESRRELNDTFSSF VQNYLPKYGRPEVEKIENLPVAIVIDQKKVAGNSRSTVGTYTDIYTFLRLLFSRAGSPFV GYSDTFSFNHPDGKCPTCDGLGKITEINLHQLVDYDKSLNEGPIDFPTFTVGNWRWKRYA HSGLFDLDKKIKDYSPEELALFLYAPQQKLANPPKEWPHTALYEGIVPRMQRSILHTDEG KRHQKYLNHFVTVKRCPDCLGSRVNERVRSCKINQKSIADAVDMPLTELHSFIRSMDLSL IKTIQEELLVRLEALINIGLSYLTLGRATETLSGGEAQRIKIAKYVNSALNDIMYILDEP SAGLHPKDIERISRALLNLKNKGNTVVLVEHNPQLIREADFIIDIGPFAGENGGHVQFSG TYDAFLASKTLTSQALQEPLPLNDQPRKARKSLSIEHATLHNLNNLSVEVPLGVLTVICG VAGSGKSSLAEEIYQKAQADNQEIIHLSQKSITANLRSTPMTYLNIFDKVRKLFAEENHV SPALFSYNSKGACPTCKGKGIIVSDMSFMEDVTSICETCHGTRYKEEVLHYLYNGKNIVE VLALSVKDGYDFFKDQPFALSLKNLLEVGLSYLKLNQSLSTLSGGELQRVKLADTLHQKK AIYLMDEPTDGLHLIDIQQSLQLFNRMVEEGNSLILLEHHIDVIKSADWLIELGPEGGEN GGQLLFTGTPANMLNSTHSITKGYL >gi|308151750|gb|GL476272.1| GENE 163 159628 - 161979 2644 783 aa, chain + ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 113 571 3 475 484 261 38.0 3e-69 MKKSILFKKLGIILLISQTLVGVPMLAQESILETTVQTETESVTTETSQTVANLESETTS QTVMQEKESSSAIAESSSGNAVAVTTETTNEIQNSDTDGKAVSAESVFSEADYKQATALE LATLVREKKVTSEELVKIALAITKRENPTLNAVITLREEAALTEAKALQDTGQPFLGVPL LLKGLGQSLKGESNTNGFGFLRDQVAGGTSTFVKALQNAGFIIIGQTNYPELGWKNISDS KLYGVSVNPWNPNHYSGGSSGGAGASVAAAFVPIASGSDAGGSIRIPASWTGTVGLKPSR GVIIGNSNSAKGQTVHFGLSRTVADTNALFETLLTKKDLPTGHLSQAQPIAYTTESPAGT PVSAEAKEAVAEAVAFLKDQGYTLVEVKHPVDGERLMKNYYTVAAGSAGIADFMARQKLK RPLERNDVELLTWALFQTGKNITSEETTAAWTDIALQAQAMDEFYQQYPILLTPTTAATA PSIDNPLLKPEHAAQMEKIDQLSPAEQKQLIYDQWLTAFTYTPFTQQANLFGHPALSVPT YVSKEGLPLGIQFNSALNEDRTLLQLGALFENNHKINQPHVEEPDKDKEPDTSGEPDKDK EPNASGELDKDKDPDASGEPDKDKDPDASGEPDKDKEPDASGEPDKDKELDTSGEPDKDK ETKTSEGPIEGKDQNQNQNQNQNQNKNQNQNQNQNQNQNPDKSGKTTSESSLDNSLNSSA NQGTKSTESTHAFSDKNMIGKKEQLPKKVLPKAGAEVPSTFWIVLGGAFLVTSGTIYIRK TRK >gi|308151750|gb|GL476272.1| GENE 164 162074 - 163003 881 309 aa, chain + ## HITS:1 COG:MA3040 KEGG:ns NR:ns ## COG: MA3040 COG3173 # Protein_GI_number: 20091858 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Methanosarcina acetivorans str.C2A # 1 299 2 298 304 187 34.0 3e-47 MRAFEKIPAFQQWQKVEAIHRGWSTDLKFKVTKNQETFLLRIFQQEELLAKQQEYQFIKK VAALGFPSSKPFLCAPIPESEQGYMLLTYLEGEDLSGVLPALSPKGQLNLGVEAGRYLNK IHKLLLPERISQREIARNLYEKKQSQLNKYKESQFCMPYQQPIISYLEKQLPLLQQRPVV YQHGDFHAGNFIYLPTRQVGVIDFNRWDFGDPYEEFYKLQFFSRNVSPLFAYGQLQGYFA GKVPTLFWQFQKLYTFHAGLYSLVWALSFGEKEIRTMEQQYQQLLEDYNCGELLVPKWFS TIQRKGLRF >gi|308151750|gb|GL476272.1| GENE 165 163046 - 163699 758 217 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 217 1 217 217 361 99.0 1e-98 MKLNGIIMIAVVGSVLSSCGWQKSKEESQKVQTVQTNNVNTEETRAISATEVSQTTALEL EQTTQTQELTELVTEEGTIWNQQKAKQLGQYMETWGQERNQNYQAYQPGHSVAFYTIQVP DDLLSYEPKIQPAIGNNPIWLNWSETGSEGGYCLVAVYSDSATQVAQKHVYLFTLVNGEA KVYVSKEQPAEEQPYLFLKETSNTELKEQFTNLVNNL >gi|308151750|gb|GL476272.1| GENE 166 163818 - 164219 557 133 aa, chain + ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 3 132 2 131 147 133 50.0 6e-32 MKETSLVIIKPDGVERKLVGKIIQRFEDKGIDLLHLKFERLTVETVKEHYEHLKDELFFP ELLAYMTSGPVVVMVVVGDNVVKKVRKLVGATNPLDAESGTLRADYGLSVTKNLIHASDS VQSAKIEMQRFFG >gi|308151750|gb|GL476272.1| GENE 167 164379 - 165989 1586 536 aa, chain + ## HITS:1 COG:MJ0001 KEGG:ns NR:ns ## COG: MJ0001 COG0436 # Protein_GI_number: 15668173 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 186 349 103 251 375 61 27.0 4e-09 MITSDELTENLSPFELSLFLEKKLHEENHNLETLLNAGRGNPNWTAPTPREAFFLLGQFA TKETLREGSEQTAGMIQPSFGRTQRFLNFLAENPSKGATFLQEIWTAEHNYFGMDKEMWL DAMLDYVIGDNYPNPVRCLKACEQPIKAYLNQELFSSEAQPFDIFAVEGGTAGICYLFDT LANNYLLEKGDRIALLLPTFAPYLEIPELPRYDFDVVKIKAEQMIIDGKTTYQYSNKEID KLKDPSIKAVFVVNPSNPTANAMGKPTIEQIKQIVAVDNPKLMILTDDVYGTFVPAFRSL FTELPYNTACIYSYSKYFGATGWRVGTIAVSQENIFDQLLKELPVARKMELQARYATLNA DTSQINFISRLVADSRDIALNHAAGLSSIQQAMMALFSLYALLKDGQAYKDEVMDICHTR EKLLFRTLGIEEPLASLNTAYYCEINFRDWTEKRYGPEFSSYLTKSWTITKVLTSLAEKE KLMLLKADAFGSDKWSVRISLANLATNQYSEVGKRMIRLSEHIKEEWLRQKRQAIK >gi|308151750|gb|GL476272.1| GENE 168 166132 - 167217 960 361 aa, chain + ## HITS:1 COG:no KEGG:EF1038 NR:ns ## KEGG: EF1038 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 361 1 361 361 635 98.0 1e-180 MKHIKGMLVFIGLFILVGCAPDQEPTKQTTSGPQETKQVKQVTVTNQTTSAAEKQAPTKN EELIANQLTFDSHEYTYEVVTGATQTTFGTTPPAKYTPEEKKEKMFWSNQPPLGLMTGNY YKNEGVFTGGNYGIVEIITEPETQRILNVEFTEFASDPYYDTRYSGVNKRLSDYPEFQAS NTRTDDTLVTVVNGITYVEKQMRDENRVTGNFYTVRGSSTSAREGLMPLAAEMDTWLKEP SKETYIGYAEDLGNGLIGRLQVITEEQKIKHVSYDEYFSDEQEKITETALRPFYRQSKYY SPGYNKQTNNSFIHFVDTLTTAITTQQTLSVNEEQELQHPSFTTYQRLAEKISTFQNSLK E >gi|308151750|gb|GL476272.1| GENE 169 167333 - 168136 1042 267 aa, chain - ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 263 3 267 270 209 40.0 4e-54 MKKLIAIDLDGTTLNAQSLISPKTEQTLKKAIDNGHYVSIATGRPYRMSHQFYQQLGLTT PMVNFNGALVHIPEKKWDLESEANIERDLVFDILAQKKELQLDFVAAENKETFYIDTLDG FDPKFFASKATLDNLLTAKNLRTNPTSMMVRTTPNQAEKVADTLTKQYGDYIDVRTWGGP MPILEMVAKGIQKAHGVDQVANFLSVKPADIIAFGDEHNDEEMLSYAGWGVAMNNATDKI KSVANDVTEKTNDQDGLADYLENYLDL >gi|308151750|gb|GL476272.1| GENE 170 168288 - 168917 491 209 aa, chain + ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 185 9 191 213 79 33.0 4e-15 MKNSRNYLRVITLIYCIYMWLFATHFHFMALNVLLAYIPIELSYLLNAEKRKRDWLIGFA WLIFYPNAPYLFTDFFHLETLSIYRGFNTIFANQIGDWWAFVCLTSGIVIYGLLGMKTVT TVSQKLQSYCGYRTIVVFQASLHFLSALAIYVGRFDRLHSVYLFMSPIETVKIIFFDWSL QKLMFILLMMFLQMLLFGLIQLLGKEEAM >gi|308151750|gb|GL476272.1| GENE 171 169069 - 170475 1582 468 aa, chain + ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 468 1 486 486 503 66.0 1e-142 MNTFFKLKENKTTVSTEIMAGVTTFFAMSYILFVNPSILSETGMPFQAVFLATIIASIIG TLIMGLFANVPYAQAPGMGLNAFFTFTVVFGMGYTWQQALAMVFICGLINILITVTKIRK MIIKAIPESLQHAIGGGIGIFVAYVGLKNAGLLSFTVQAEPQNGVVNGSSIVPALGNFDN PAIILAVIGLVLTTILVVTNVRGAILIGIVVTTLVAIPMGVVDTASVDWHANSLGNSFKE LGTTFGAAFGAEGLQSLFSDSSKIPQVLMTIIAFSLSDTFDTIGTFIGTGRRTGIFSKED ELALEDSKGFSTKMDKALFADAIATSIGAIFGTSNTTTYVESAAGIGAGGRTGLTSVVVA ILFALSSLFSPLIAIVPAQATAPALILVGIMMLASFKDINWTDLEDAIPAFFASIFMGLC YSISYGIAAGFIFYAVVKVVKGKAKEVSPIIWVIDALFILNFVILAIL >gi|308151750|gb|GL476272.1| GENE 172 170685 - 171881 958 398 aa, chain + ## HITS:1 COG:L60571 KEGG:ns NR:ns ## COG: L60571 COG0477 # Protein_GI_number: 15672648 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 397 7 401 405 431 57.0 1e-120 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAA IVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNAT AMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLL TIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRS LSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFV QTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGS TVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL >gi|308151750|gb|GL476272.1| GENE 173 171936 - 172121 266 61 aa, chain - ## HITS:1 COG:no KEGG:EF1043 NR:ns ## KEGG: EF1043 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 101 100.0 1e-20 MRYLVVFFWTFALGQVVGYIGGALSGGSYDFKMTTILSLATAVIILLIAHFAVPKETKPV K >gi|308151750|gb|GL476272.1| GENE 174 172239 - 175568 3228 1109 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1109 1 1108 1108 872 44.0 0 MSFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQ PIIGLRLEYTPAEKEGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFYLAEHQSLLSDLF AVTLSAKGEVAQTFFEDEQQAVHAFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQRE QLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQTPEIEGLNYLREAETTMEQMLQ IAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQTAGSYLRTLCLEKLPERVPHLNE VYQKRLEKELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDV DPIKYDLLFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAK MVLRDVARVFGLSQSEANRWSAAVPNKLKITLEEAYQESKRMQELVNFSPNNQLLYKTAV QLEGLPRHVSTHAAGVVISDENLLNLVPLQPGSNEILLTQFTMNDVEKIGLLKMDFLGLR NLSIIDDTLTAVKRVYNQTIRLNQIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLG PTSIEDIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIM QVAAKMAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERF ANYGFNRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTI LQPSINQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDR KWLKVENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSILLSGGSMDLLETLKPKEEEIAD YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQLVHELVENQPTKLLIYVKNIRTIR TKKGEQMAFVDGDDTTGSISLTLFPTVFRQLRQSVEKGQVYYVEGKVERSTYNQELQILV QRIEKAQQVETSISDETCFIRITKDVEQTDVFQKMKEVLSRHAGHIPVIVYFEKTGKKIV LNEENWVAHTSASQQQLAYVLGEQNVIFK >gi|308151750|gb|GL476272.1| GENE 175 175741 - 176703 1303 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 314 1 313 319 437 70.0 1e-122 MKRIGILTSGGDAPGMNAAIRAVVRKSIFDGIEVYGINYGFAGLVAGDIRRLDVADVGDK IQRGGTFLYSARYPEFATEEGQLKGIEQLKKFGIEGLVVIGGNGSYHGAMALTKRGFPAV GIPGTIDNDIPGTDFTIGFDTAINTVLESIDRIRDTATSHVRTFVIEVMGRNAGDIALWS GVAGGADEIIIPEHDFDMKNVAKRIQEGRDRGKKHCLIILAEGVMGGNEFADKLSEYGDF HTRVSILGHVVRGGSPSARDRVLASKFGSYAVELLKEGKGGLCIGMLDNQVVAADIIDTL ENNKHKPDLSLYELNHEISF >gi|308151750|gb|GL476272.1| GENE 176 176768 - 178525 2450 585 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 683 77.0 0 MKKTKIVCTIGPASESVDMLVNLINAGMNVCRLNFSHGDYEEHGARIKNIREAVKITGKR VAILLDTKGPEIRTNDMENGAITMKIGDSVRISMTEVLGTNEKFSITYPELINDVNVGSH ILLDDGLIDLEVTDIDRDANEIVTVVKNEGVLKNKKGVNVPGVSVNLPGITEKDANDIRF GIGQGIDFIAASFVRRASDVLEITKILEEENATHIQIIPKIENQEGIDNIDEILKVSDGL MVARGDMGVEIPTEDVPVVQKALIKKCNALGKPVITATQMLDSMQRNPRPTRAEANDVAN AIYDGTDAVMLSGETAAGDYPLEAVQTMARIAVRTEETLVNQDSFALKLYSKTDMTEAIG QSVGHTARNLGIQTIVAATESGHTARMISKYRPKAHIVAITFSEQKARSLSLSWGVYATV ADKPSSTDEMFNLASKVSQEEGYASEGDLIIITAGVPVGEKGTTNLMKIQMIGSKLVQGQ GVGEEAIIAKAVVAGTAEEAVAKATEGAILVTKTTDKEYMPAIEKASALVVEEGGLTSHA AVVAIAQNIPVIVGAADATSLINNDEVITVDPRRGIVYRGATTAI >gi|308151750|gb|GL476272.1| GENE 177 178899 - 179468 594 189 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 170 1 167 176 115 42.0 5e-26 MKWSLLELNKYKEEPLVFSETLHLKEELLQRDDTLLDVSPIKVEGLLAVNKSEYLLHYTI QVTVTVPSSRSLEPVALPMQITVDEVFMTKEQMDTRDERFAAEEIILLDKPTIDLDESVE DNILLSIPIQVLTEEEQNSQEMPSGNDWEVISEEAYLESKQKAAEQTVDPRLAKLSELLS DNAEEEDNS >gi|308151750|gb|GL476272.1| GENE 178 179525 - 179704 322 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 59 1 59 59 128 100 2e-28 MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA >gi|308151750|gb|GL476272.1| GENE 179 179909 - 181330 1705 473 aa, chain + ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 473 1 474 474 790 80.0 0 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNEE >gi|308151750|gb|GL476272.1| GENE 180 181488 - 182174 957 228 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 307 80.0 9e-84 MSNILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRID IEGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVL LNKVWGYETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVMRS >gi|308151750|gb|GL476272.1| GENE 181 182185 - 183693 1314 502 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 2 491 11 488 491 332 39.0 1e-90 MKRTIKKELEGPSLTIKWAFASSFFIFVVFTIFAVITYKSSVSLIVAKEKENVEATIAEV TNRLANANENLTVTDVFDYLKTPSERDENYYNKHTAVEGSFMEMDSFISELGQPELYLSV YDTNQKLVFKTQNEYDKLLQLDRQLPVVRTVFDKTGFYSVEPIFSKETREKIGYIQAFYE LSSFYEIRNHLLLTLVVLEVISLIVSSVLGFILSSYFLKPLKVLRDTMDTIRKDPQSDVH MPEINTRDELADISEIFNEMLDRMRRYIEQQEQFVEDVSHELRTPVAIMEGHLNLLNRWG KDDPEILDESLKASLQEISRMKSLVQEMLDLSRAEQVDTQYANERTDAKQVVYQVFNNFQ LVYPEFHITLDDDLPTEVELKIYRNHFEQLLIILLDNAIKYSTDRKEVHISISRTMNEFE IAVQDFGEGITEEDLEKIFDRFYRVDKARARNKGGNGLGLSIAKQLVENYKGRIDAESVL HQGTIFRIFIPIAGIKEESNVQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:05:07 2011 Seq name: gi|308151749|gb|GL476273.1| Enterococcus faecalis TX4000 genomic scaffold Scfld51, whole genome shotgun sequence Length of sequence - 51295 bp Number of predicted genes - 45, with homology - 44 Number of transcription units - 22, operones - 11 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 575 454 ## EUBREC_1256 hypothetical protein - Prom 726 - 785 10.5 + Prom 891 - 950 5.2 2 2 Op 1 . + CDS 975 - 1961 1248 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 3 2 Op 2 . + CDS 1976 - 2200 376 ## EF0064 hypothetical protein + Term 2203 - 2251 11.1 - Term 2179 - 2246 15.2 4 3 Op 1 . - CDS 2247 - 3926 2108 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 3975 - 4034 12.5 - Term 4014 - 4050 2.0 5 3 Op 2 . - CDS 4062 - 8027 4859 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 8236 - 8295 10.5 - Term 8410 - 8453 12.6 6 4 Tu 1 . - CDS 8468 - 9844 1872 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 9904 - 9963 6.6 - Term 9995 - 10051 14.3 7 5 Tu 1 . - CDS 10055 - 10876 991 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 10902 - 10961 6.0 - Term 10984 - 11019 5.3 8 6 Op 1 42/0.000 - CDS 11020 - 11859 1082 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components - Prom 11888 - 11947 4.8 9 6 Op 2 25/0.000 - CDS 12021 - 12713 231 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 10 6 Op 3 . - CDS 12739 - 13692 1160 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 13745 - 13804 5.4 - Term 13788 - 13851 16.3 11 7 Op 1 2/0.000 - CDS 13859 - 14710 768 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Prom 14745 - 14804 4.1 - Term 14829 - 14878 12.1 12 7 Op 2 . - CDS 14891 - 15136 329 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 15177 - 15236 4.2 13 8 Op 1 5/0.000 - CDS 15251 - 15817 741 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 14 8 Op 2 6/0.000 - CDS 15903 - 16433 565 ## COG3688 Predicted RNA-binding protein containing a PIN domain 15 8 Op 3 7/0.000 - CDS 16448 - 17305 570 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 16 8 Op 4 8/0.000 - CDS 17295 - 17693 345 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 17 8 Op 5 4/0.000 - CDS 17690 - 19102 1609 ## COG0215 Cysteinyl-tRNA synthetase 18 8 Op 6 4/0.000 - CDS 19095 - 19634 589 ## COG1045 Serine acetyltransferase - Prom 19654 - 19713 8.2 - Term 19657 - 19710 14.0 19 9 Op 1 3/0.000 - CDS 19904 - 21361 1921 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 20 9 Op 2 . - CDS 21414 - 21887 546 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 21 9 Op 3 2/0.000 - CDS 21906 - 23051 1380 ## COG4956 Integral membrane protein (PIN domain superfamily) 22 9 Op 4 1/0.000 - CDS 23152 - 24522 1445 ## COG1066 Predicted ATP-dependent serine protease 23 9 Op 5 . - CDS 24601 - 25080 560 ## COG0756 dUTPase + Prom 25316 - 25375 8.5 24 10 Op 1 22/0.000 + CDS 25406 - 26221 946 ## COG0263 Glutamate 5-kinase 25 10 Op 2 . + CDS 26214 - 27461 1264 ## COG0014 Gamma-glutamyl phosphate reductase + Term 27465 - 27510 12.5 - Term 27454 - 27498 8.3 26 11 Tu 1 . - CDS 27553 - 28509 766 ## COG2378 Predicted transcriptional regulator - Prom 28741 - 28800 6.5 27 12 Op 1 . + CDS 28565 - 29032 590 ## EF0035 hypothetical protein 28 12 Op 2 . + CDS 29040 - 29549 611 ## COG4283 Uncharacterized conserved protein + Term 29597 - 29636 3.1 29 13 Tu 1 . + CDS 30094 - 32709 2574 ## COG4485 Predicted membrane protein + Term 32732 - 32764 -0.7 - Term 32901 - 32943 0.7 30 14 Op 1 . - CDS 32978 - 33484 77 ## gi|229547100|ref|ZP_04435825.1| membrane protein - Prom 33543 - 33602 3.8 31 14 Op 2 . - CDS 33619 - 33726 79 ## - Prom 33906 - 33965 13.3 - Term 33968 - 34028 10.2 32 15 Tu 1 . - CDS 34035 - 36626 2671 ## COG2898 Uncharacterized conserved protein - Prom 36723 - 36782 3.8 - Term 36753 - 36802 13.4 33 16 Op 1 . - CDS 36818 - 37198 457 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 37233 - 37292 6.0 34 16 Op 2 3/0.000 - CDS 37298 - 38503 971 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 35 16 Op 3 3/0.000 - CDS 38527 - 40095 1750 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 40153 - 40212 4.4 36 16 Op 4 . - CDS 40244 - 41014 710 ## COG1737 Transcriptional regulators - Prom 41037 - 41096 8.4 + Prom 40994 - 41053 9.4 37 17 Tu 1 . + CDS 41212 - 41415 253 ## EF0026 hypothetical protein + Term 41423 - 41460 6.0 - Term 41410 - 41447 6.0 38 18 Tu 1 . - CDS 41463 - 41990 651 ## COG3247 Uncharacterized conserved protein - Prom 42022 - 42081 8.0 - Term 42180 - 42230 8.2 39 19 Op 1 4/0.000 - CDS 42238 - 42615 416 ## COG4687 Uncharacterized protein conserved in bacteria - Prom 42645 - 42704 6.0 - Term 42695 - 42738 9.3 40 19 Op 2 13/0.000 - CDS 42777 - 43688 1387 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 41 19 Op 3 13/0.000 - CDS 43711 - 44514 1063 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 42 19 Op 4 . - CDS 44549 - 45541 1336 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 45621 - 45680 6.2 - Term 45706 - 45743 -0.7 43 20 Tu 1 . - CDS 45776 - 46288 550 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 46417 - 46476 13.1 - Term 46434 - 46489 13.1 44 21 Tu 1 . - CDS 46490 - 49375 2795 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 49479 - 49538 9.6 + Prom 49534 - 49593 7.6 45 22 Tu 1 . + CDS 49627 - 51258 1907 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains Predicted protein(s) >gi|308151749|gb|GL476273.1| GENE 1 2 - 575 454 191 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_1256 NR:ns ## KEGG: EUBREC_1256 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 10 183 13 179 352 104 33.0 2e-21 MKPFKTLDEQLAILEARGLVFSDKENAKKKLSFYGYYEIINGYKDFLLEKKQKITDHQEE CFIENSTFDHIFSLFMMDKTITSSVIDATCDVEMYVRAAISYVVSKNIGEQQINYLNRRH YQSGKKNKNGQGYKVDQLITKFKKIIYDDIEPMKHYRGYNGNVPPWIMLKGTTFGNLANF YKFMICQIKLE >gi|308151749|gb|GL476273.1| GENE 2 975 - 1961 1248 328 aa, chain + ## HITS:1 COG:BS_yceB KEGG:ns NR:ns ## COG: BS_yceB COG2141 # Protein_GI_number: 16077357 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 20 328 3 313 313 233 42.0 4e-61 MKLSILDQLTVPKNQSASDTLQEAKELAQLAEKLGYTRIWYAEHHGSDAFASATPEILVA HIASATEKIRVGAGGIMTMHYAPFKVAETFKTLAALYPDRIDLGMGRSPGGSPLTTLALN NGQPPQLDQFDKLPEILLFLREEFPEDHLYSKISAVPREVLLPQPWLLGASKESARSAGE YGINFSFAQFIHGHLPKEVLSAYYKHFRPVTEQQEPQVSAAYFTFAADTKEEAEYHAASF EHYIFATEHGLPNKFLSPEEALAFPYSEMDKLVLEQNKQRFVIGSSQEVAEFFHQQEELG LTEAMLITPGYDKQTRFQSFERLAKELL >gi|308151749|gb|GL476273.1| GENE 3 1976 - 2200 376 74 aa, chain + ## HITS:1 COG:no KEGG:EF0064 NR:ns ## KEGG: EF0064 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 104 100.0 9e-22 MLEVLKRINTLAQKEREQGLTSEEQALRVDLRQEYLRTIREQFNKTLMGVTIYDPTGEDV TPEKLKEEQQKYFD >gi|308151749|gb|GL476273.1| GENE 4 2247 - 3926 2108 559 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 558 22 559 559 421 41.0 1e-117 MKSKRIKGLIGLSLTTLLVLAACGGDGGAGAEKAKGGSEKTAAKQEFKVVVQQEMPSADL SLGTDTISFTALNNAYEGIYRLDDKSKPQPAGAKEKVQVSDDGLTYTVKLREEAKWSNGD PVTAADYVFSWQRTADPQTGAEYAYFLEMIENGADIVAGKKPVSELGIKANGDYELEIKL AKPTPYFDYLLAFPLFFPQHQATVEKYGKDYAASSEKAVYNGPFVLANFEGAGSDTNWTL EKNENYWDKDNVKLDKINFDVVKEAPTALNLFQDGQADDVILSGELAQQMAKDPELVIEK EARTSYLEFNQRDKNSPYNNVNLRKAISAAIDRNALVDKILGDGSVVATGLIPEGMSYSP TDDKDFADENKKIVEYSPEKAKEYWAKAKKELGITTLKMDIVADDVDSTKKLAEYIQGTL KDTLEGIDVTVSPVPFSVRIDRGSRGDFETILGGWAADYADPSSFLDLFVTGNNYNRGRF SSKAYDELIEASATRDASDPEKRWEDMVKAEKLLIGEETALAPLYQKATAHLRSKEVKGV VAHGAGAQYDYKWTYVTEE >gi|308151749|gb|GL476273.1| GENE 5 4062 - 8027 4859 1321 aa, chain - ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 667 1321 113 772 772 433 41.0 1e-121 MKKLSFKKVKWGMHFLMAVALIAPSVTSTAYAVETTSQQSSEAVTSTTDSSRKQEPVITQ ETTDIKQEAPNQATSDSVKQSQETTAPTETTNLETSTAEKEETSTPQKITILGTSDVHGQ LWNWSYEDDKELPVGLSQVSTVVNQVRAQNPAGTVLIDNGDNIQGTILTDDLYNKAPLVN EKTHPMITAMNVMKYDAMVLGNHEFNFGLPLIQKIQQEATFPILSANTYNKEDGRRFVEG TTTKELDFNQDGQPDLKVGIIGLTIPHIPLWDGPRVTSLNFLPLKEEAEKAVTELKTNDQ ADIIVASIHAGQQNSDPAASADQVIENVAGIDAYILGHDHLSFTKQGAAPNGKTVPVGGP KDTGTEVVKIDLSVAKNADKWEVQEGTATIVPTTNVPADEVVKAATKEYHEQTRAFIQEE IGTATADFLPKQEIKGIPEAQLQPTAMISLINNVQKEVTGAQLSAAALFKYDSKLPAGKI SYATIFDIYKYPNTLVSVPINGENLLKYLEKQGAYYNQTQPDDLTISFNPNIRVYNYDMI SGVDYKIDISKPVGERIVDAKIDGQPLDPAKEYTIAMNNYRYGGLASQGIQVGEPIKNSD PETLRGMIVDYIKKKGTLDPEKEIERNWSIIGTNFDEKWRAKAIELVNDGALQIPTSPDG RTPNAAAITKQDVRNAGFDLDNAYTIMHTNDVHGRLEAGKGELGMARLKTFKDQENPTLM VDAGDVFQGLPISNFSKGADMAKAMNEVGYDAMAVGNHEFDFGLEIALGYKDQLNFPILS SNTYYKDGSGRVFDPYTIVEKAGKKFAIVGVTTPETATKTHPKNVEKVTFKDPIPEVEAV INEIKEKYADIQAFVVTGHLGVDETTPHIWRGDTLAETLSQTYPELDITVIDGHSHTAVE SGKRYGKVIYAQTGNYLNNVGIVTAPESEPTKKTAKLISAAELLELPENPAVKAIVYEAR TNFNAENEKVIVDYIPFTLDGQRENVRTRETNLGNLIGDAIMSYGQDAFSQPADFAVTNG GGIRADIKQGPIKVGDVIAVLPFGNSIAQIQVTGAQVKEMFEMSVRSIPQKDENGTILLD DAGQPKLGANGGFLHVSSSIRIHYDSTKPGTRLASDEGNETGQTIVGSRVLGIEIKNRQT QKFEPLDEKKQYRMATNDFLAAGGDGYDMLGGEREEGISLDSVLIEYLKSATSLRLYRAA TTIDLAQYKEPFPGERIVSISEEAYKELIGGGETPKPDPKPDPKPDPKPDPIPTPETPVA TNKQNQAGARQSNPSVTEKKKYGGFLPKTGTETETLALYGLLFVGLSSSGWYIYKRRNKA S >gi|308151749|gb|GL476273.1| GENE 6 8468 - 9844 1872 458 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 542 59.0 1e-154 MENRYAIILAAGKGTRMKSKLYKVLHPVAGKPMVEHILDQVEQTEPTEIVTIVGHGAEMI KSHLGERSQYALQAEQLGTGHAVMQAQELLGGKQGTTLVITGDTPLLTAETLKNLFDYHQ GKNASATILTAHAEDPTGYGRIIRDHVGIVERIVEQKDASEEEARVQEINTGTFCFDNES LFEALAKTDTNNTQGEYYLTDIIEILKKEGKAVAAYQMADFDEAMGVNDRVALSTANKIM HRRLNEMHMRNGVTFIDPDTTYIDEGVVIGSDTVIEAGVTIKGKTVIGEDCLIGAHSEIV DSHIGNQVVVKQSVIEESVVREGADVGPYAHLRPKADVGANVHIGNFVEVKNATIDEGTK VGHLTYVGDATLGKDINVGCGVVFVNYDGKNKHQTVVGDHAFIGSATNIVAPVTIGDHAV TAAGSTITEDVPSEDLAIARARQVNKEGYAKKLPYMKD >gi|308151749|gb|GL476273.1| GENE 7 10055 - 10876 991 273 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 270 1 270 272 354 65.0 8e-98 MKIRRSERLIDMTQYLLDHPHTLVSLTYFADRYQSAKSSISEDLAIVKKTFKERGTGILE TIPGAAGGVRFIPEIPYEEAEQLIMDLCDRLSEQDRLLPGGYVYLSDLLGEPNLLRQVGR IIASKYLGKQIDAVMTVATKGVPIAQAVSYYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ERIEKMELSKRSLKRGSKVLVVDDFMKGGGTVNGMKSMIEEFEAELVGITVFAESKFNGR RAIDDYTSLLYVEDVDTQTKTISVVPGNYFTEK >gi|308151749|gb|GL476273.1| GENE 8 11020 - 11859 1082 279 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 267 1 267 269 242 59.0 5e-64 MAEMLSYAFMQKAFLAALFISVIAPMLGVFLVIRRQSLMADTLSHVSLAGVALGFFFNWN PNLMTLIVVIVAAIILEYLRMIYSTYSEISIAILMSGGLALALVLMNLTGGNSAASIQSY LFGSIVTITWDQVVMLAILFVVLVLLFMLFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNV ITGVAIAVMIPIAGALLISAIMVLPAAIGMRIGKGFNTVIIISVFMGLIGMLTGLTSSYY LETPPSASITLIFIGLFLLVNIYRRVVVMVQRKQKMQRN >gi|308151749|gb|GL476273.1| GENE 9 12021 - 12713 231 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 12 229 14 232 311 93 32 2e-18 MHYIEVENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKI TVAKKNSVGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEK ALKSVDMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLL QHSAHEHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCFHMSEESYT >gi|308151749|gb|GL476273.1| GENE 10 12739 - 13692 1160 317 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 12 316 9 311 312 300 55.0 2e-81 MTKIYRRLIIGVTLAISAFLLASCGQTTQSPKEKKELTVMTTFYPMYDFAKQVVGDEGEV ELLIPAGTEPHDYEPSAKDLAKITDADVFVYNSKELETWVPNVIENLDTKKVSIVEASQS IQLMQGTEEEESGEEGHEGHNHSHELDPHVWLDPVLAQKEVIAIRDALIKKYPEKKAVFE KNTAAYLEKLTALDKEYQAAFAGAKNRTFVTQHAAFGYLAKQYGLTQEPIAGISPDQEPS PSRLAELKKYIKTNNVSVIYFEASASTKVAKTLADETGVELAVLNPLESLTQKEQEAGEN YVSVMKENLAALQKSIH >gi|308151749|gb|GL476273.1| GENE 11 13859 - 14710 768 283 aa, chain - ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 280 1 280 291 335 59.0 7e-92 MEIIERAPAKINLGLDVLHKRVDGYHEVESIFASVDLADHLTFENLEEDIIRIETDSSFL PVDRRNHVYQAVDLLKRTYNIHKGIKIYIEKRIPVAAGLAGGSSDCAAALRGLNKLWNLG LTMDELCEIGSQIGMDVPYCLRGGTAFANGRGEKIEALPTMPQCWIVLVKPRISVSTSTV FNDLAVDELHHPDIAGLRIAIENGDYTGMTQTVGNALESVTIARHPIVQQIKDRMLKYGA DAALMSGSGPTVFALCEKKTRAQRIYNGLKGFCEEVYLVRTLK >gi|308151749|gb|GL476273.1| GENE 12 14891 - 15136 329 81 aa, chain - ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 76 1 76 85 93 60.0 1e-19 MPTTLSSIKKDLEGRIGSEIMLVAQTGRKRQTERKGILTETYPSVFVVDLDPDENSFERV SYSYSDVLTRTVEIEFIGQAV >gi|308151749|gb|GL476273.1| GENE 13 15251 - 15817 741 188 aa, chain - ## HITS:1 COG:lin0275 KEGG:ns NR:ns ## COG: lin0275 COG1595 # Protein_GI_number: 16799352 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 2 186 10 201 201 59 26.0 4e-09 MLEQIQQALAGDQEQFQALYGQYQPVIYKCMKKYYLKDYDTEDWLQEGRIVFFRTLERFD SEKQASLGKFFKRNFENHVHSLIRHQCAYKRRTDTLSISLEQRLESAGEELVDYLGTAAT DPLGQLMIQEKLAAFPTRLSSLEQQILNAYLKGYTLEEIAKVRGGTFSAVRSAYDRAKAK MKYTLENE >gi|308151749|gb|GL476273.1| GENE 14 15903 - 16433 565 176 aa, chain - ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 172 172 149 47.0 3e-36 MKKQLLIVDGYNMIGAWPELVQLKKQERLEDARELLLSRLSNYAKYEGLEIIVVFDAQLV PGIQQTYKKYLLTVVFTKEDETADSYIERLAGEKNDRLTQVTVATSDLAEQWVVFSQGAL RTSANELYKAVQKTEKTITIHATDIHFQQFRRNSPWNVEQLSKLSEKLEELSQKKD >gi|308151749|gb|GL476273.1| GENE 15 16448 - 17305 570 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 45 285 7 249 255 224 46 1e-57 MKNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQG RGNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDHGVHQGMVLAITAYQYL TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNTQGAIALIIGNEGR GMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRNPL >gi|308151749|gb|GL476273.1| GENE 16 17295 - 17693 345 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 5 123 11 129 141 137 55 1e-31 MRDYKQLNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAML AGEMLTEEEEVMYKRGRNAKSHTFAKNADVTTYRVATGFESLMGYLHLTQQKERLEELIN WCIKKVGETNEK >gi|308151749|gb|GL476273.1| GENE 17 17690 - 19102 1609 470 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 470 3 466 466 561 58.0 1e-160 MIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE VNYVSNFTDVDDKIIKAAKELKITAPEVAERFIKAFEEDTQALNVQPATLHPRVMDHMPD ILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVEQQLKEDP LDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENE IAQSEAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVDPQILRFFMSTT QYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDEHYLAQLNELEQRFIT EMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSGWLAIFGLFFKNEELG DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDTPQGTRWRRSE >gi|308151749|gb|GL476273.1| GENE 18 19095 - 19634 589 179 aa, chain - ## HITS:1 COG:SPy1944 KEGG:ns NR:ns ## COG: SPy1944 COG1045 # Protein_GI_number: 15675746 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 173 193 234 65.0 7e-62 MSWLKRSVAAVKRNDPAARTTLEVLLTYPGLHALFWHRLSHFLYRHQLFLLAKIHAQFWR FITGVEIHPGATIGAGVFIDHGMGIVIGETAEIEEDVVLFHGVTLGGTGRDTGKRHPTVK KGAMISARAQILGPVVIGERSKIGAGAVVISDIPADATAVGVPAKVVRLNGRKVEKGHD >gi|308151749|gb|GL476273.1| GENE 19 19904 - 21361 1921 485 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 485 6 488 491 635 65.0 0 MTKVRVRYAPSPTGHLHIGNARTALFNYLFARHNDGEFIIRIEDTDQKRNIEDGEKSQLE NLAWLGMEWDESPAHPGEYGPYRQSERKEIYQPLIDQLLSSNRAYKCYCTPEELEAEREA QQARGEMPHYAGTCANLTPSEQAAKEAAGLEPVIRFRVPRNTEYKFDDIVKGEITFESDN IGGDFVIQKRDGMPTYNFAVAVDDHLMKISHVLRGDDHIANTPKQLMIYEAFEWTPPVFG HMTLIINSETGKKLSKRDETILQFIEQYRELGYLPEAMFNFIALLGWSPVGEEEIFSQED LIKLFDEQRLSKSPAAFDAKKLEWINNQYMKQMDLGELTDMCIPYLVADGRVEENPSPEK IEWLKQLVSLYQPQMSYAAEIVELSNLFFNEHPVLDDAAKEFLQGETVPTVLHAFKEQLE ALDVFDVPSIKAAIKAVQKETGVKGKNLFMPIRIAVSGQMHGPELGETIELLGKEKALDH LNKVL >gi|308151749|gb|GL476273.1| GENE 20 21414 - 21887 546 157 aa, chain - ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 1 157 1 157 158 196 60.0 1e-50 MIRIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQ LFPETDPQFKNANSVNLLTKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLAAS CHLAVTQVNIKATTMETMGFVGKKEGIGAIAVALLEK >gi|308151749|gb|GL476273.1| GENE 21 21906 - 23051 1380 381 aa, chain - ## HITS:1 COG:lin0266 KEGG:ns NR:ns ## COG: lin0266 COG4956 # Protein_GI_number: 16799343 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Listeria innocua # 5 362 5 357 357 375 54.0 1e-104 MQKRIITLLMIIAGASLGISLFPMAWEMAKQGNNSWLNNNFTNGLIGAIIFFILSLGLAK YIVSAVKKIEAALNEMSLTYLLFGSIGAIIGLTIGVIISIPMYNLQIPVVNSLLPILVMI ILGYLGFRMGTTRIEEWKKVFTPRQKKANTEDTEGQMLERKVEDNFHKYKILDTSVIIDG RIYDIAKTGFLEGVLLIPNFVLYELQYIADSGDSLKRVRGRRGLDILNALQKEEGISVEM YDGDFEDISEVDSKLIKLAKLLDGVVVTNDYNLNKVSEFQNVPVLNINALANAVKPVVIP GETMNVMVVKAGTERQQGVAYLDDGTMVVVEDGQHYMNEQIEVVVTSALQTAAGRMIFAK PAHAGRGINDRKDNHPKNDKN >gi|308151749|gb|GL476273.1| GENE 22 23152 - 24522 1445 456 aa, chain - ## HITS:1 COG:SPy0236 KEGG:ns NR:ns ## COG: SPy0236 COG1066 # Protein_GI_number: 15674421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Streptococcus pyogenes M1 GAS # 1 456 1 453 453 633 73.0 0 MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQR LSEVVPKKEPRVKTELVELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGT VLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEPDYVIIDSIQTMTQ PDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAM EGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAG GVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRRVNSIEQRVREAQKLGF TKVYVPKNNLGGWEAPEGIEIIGVSTIGETLRKVFN >gi|308151749|gb|GL476273.1| GENE 23 24601 - 25080 560 159 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 157 1 149 150 156 53.0 1e-38 MKQRGFEIISKYQEEGLSVPQRATKGAAGYDFQAAETVVVPSLWKLQQAGENPKPILVKT GIKAYMPDSEYLELVSRSSNPLKRFLLLANGVGVIDRDYYNNENNEGHIMFQFLNFGYED VVIEKGERIGQGIFKPFLLADDDQVEAERTGGFGSSGQK >gi|308151749|gb|GL476273.1| GENE 24 25406 - 26221 946 271 aa, chain + ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 269 1 269 276 334 63.0 1e-91 MRNKLQQAKRIVIKVGTSSLIYPNGNINLKAIDQLAFTLSDLSNQGKEIILVSSGAIGVG LNKLNLSVRPTTIPEQQAVAAVGQAELMNIYNQRFSTYSQQMAQVLLTRDVIEYPESRNN VTNTFEQLLKMNIIPIVNENDTVAIEELDHLTKFGDNDQLSAIVCQIVQADLLVMLSDID GFFSDNPTVNKEATLFSEINEINEDLFQLAGGKGSRFGTGGMSSKLKAAERVLANQQAMI LANGKQPKIIFEILEGKDIGTLFIKGGHESD >gi|308151749|gb|GL476273.1| GENE 25 26214 - 27461 1264 415 aa, chain + ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 1 415 1 415 415 528 65.0 1e-150 MTDLKQLGQQAKEASYTLGLMDTRQKNTLLNKMAVAIEANAPRILQANALDLEQAATHGI SETMQDRLRLTEERITAMAEGIRQVATLPDPIGEVDKMWRNEAGLLIGQQRVPLGVIGII YESRPNVTTDAASLCFKSGNAVILRGGKEAFHSNQILVTILQEALIQEAVSPHLIQFVDD TSRETAQQLMRLNDYLDVLIPRGGANLIKTVLTTATVPVIETGTGNCHIYVDKDAQLTMA TEIIVNAKCQRPSVCNAAETLLIHQEVAEAFLPTIEKALKEFHVELRADERALAIFEEAI PATEQDWETEFLDFILAVKVVDSLDEAIQHINRYNTKHSESIISDNYFATQQFLQQVDAA AVYANASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAELTSTKYVIYGNGQARS >gi|308151749|gb|GL476273.1| GENE 26 27553 - 28509 766 318 aa, chain - ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 8 316 1 310 315 146 27.0 4e-35 MTPMEGKMKKSERLNQELFFLRTHPQFNLNQLMKTFGISKSTALRDIEALENLGVPLYVE NGRYGGYRVLNKPLLPPIYFNENEVLAIFFSLQLLKLVAESPFGHSYQQIKQKLLHSLDE PTQFKISQMSKVVYYEGIEQVEAPGNLEQLFHCILAQQVIQFNYTRYEATTKKILPTRLT ILEGYWYCSGYDVTKKAWRTYRCDFMEAIQQLNQTLDFTTEELKESYRHQQTTARTIPFK AIITEKGKEFFYKHRFDNIQLEETPTQCFLVGQIHPTETQFLANYFMGFGEEVTILEPVQ VKQAYVESIMRIQKKYQE >gi|308151749|gb|GL476273.1| GENE 27 28565 - 29032 590 155 aa, chain + ## HITS:1 COG:no KEGG:EF0035 NR:ns ## KEGG: EF0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 155 292 99.0 4e-78 MKNTQFALFMVLNGRATEALTFYQEAFAGDILFKITNQEFKERLNPSLTIPAGEEHWLSH SILQMDTFQLQLADNPLFAGMNTMPTEQLTLSLTVNSRHSAKTIFEKLTCHPESCIIQEP IENEFATFYAIVKDPFGLVTQITHEKQADPTKKGR >gi|308151749|gb|GL476273.1| GENE 28 29040 - 29549 611 169 aa, chain + ## HITS:1 COG:YDR540c KEGG:ns NR:ns ## COG: YDR540c COG4283 # Protein_GI_number: 6320749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 1 166 1 166 179 174 57.0 5e-44 MRTYESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLS WEEQEQRGLTVQTPAEGYKWNQLGSLYQSFYQTYGQMSLESQLIALQDTLEKLLHWIDSL SEDELFLPQQRAWATTKAQWPLWKWIHINSVAPFTSFRTQIRKWKKACL >gi|308151749|gb|GL476273.1| GENE 29 30094 - 32709 2574 871 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 6 844 2 829 850 527 39.0 1e-149 MKNKSRQFLKNNWPYMLASFFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASF NNVLHGKQSLFYTWNASLGLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGS AGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLM DQRKPTLLFVSYFLLFITNYYFGFMIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLAG GASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIG LLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYITPLNLFWHGMHAPNMFLFRYSFL FSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTAT FLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNYASRSLYSEP YPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGF RSRGTNLNIRYQNNTLLMDALMGIKYNIAENNPMKFGFERQAAAGKYQLYRNENALPLGF LADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFT EKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYN LGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDLTTGKRSASG TFTADKDQVLVTTIPYDKGWRVKIDGKKVTPKAFKDAFLSVPVSAGTHTIQFSYLPEGLI PGIVLFVLCTGGFVAYVTLIPARRNRKKEDK >gi|308151749|gb|GL476273.1| GENE 30 32978 - 33484 77 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229547100|ref|ZP_04435825.1| ## NR: gi|229547100|ref|ZP_04435825.1| membrane protein [Enterococcus faecalis TX1322] hypothetical protein HMPREF9498_01076 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_01902 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_02242 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_03279 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01586 [Enterococcus faecalis TX0102] membrane protein [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_03279 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_02242 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01902 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_01076 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01586 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9496_01452 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_00573 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_00867 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01178 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_02343 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01754 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_01113 [Enterococcus faecalis TX1341] conserved domain protein [Enterococcus faecalis TX1467] # 1 168 4 171 171 201 99.0 2e-50 MNTKKWNWSILAFFIPYLVSNIFLFFTLTEKDNKLLKMIEESSKLLNISNGEFNFFMIVI VIIANLCIFFVTFIILKIVLLIFGFKKNYNQDIFISLLLSVSVVNLLVLFISEIVTIDRL PLSISTSSIEVIIFLLLFYSNTKDVKATKLLFFGKLWLLLFNIVSLVV >gi|308151749|gb|GL476273.1| GENE 31 33619 - 33726 79 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MACNVKMSSCFIQIHGLGLTKSKLELIKMFYNDDK >gi|308151749|gb|GL476273.1| GENE 32 34035 - 36626 2671 863 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 257 849 1 590 613 413 38.0 1e-115 MKKNISQLTQWLKEHSLLLKLIFLGSVLVFVANQVTHIAQGMTWADIFSTMEQQSTGRLI GMVLAGLLGVIPMLLYDYVVVKLLEKEGKPPMKRMDWLTSAWVTNTINNLAGFGGVVGAT LRINFYGKDVPRGKVVATVSKVALFLISGLSILSFVAFVDLFFIRTQNVFREYWVWLLLG SLIAPALWFFTYLKRRTLFKTFFPKAVLLLFGASLGQWLGGMFAFLMIGRLMQVPVSMVS VYPMFVIATLIGMLTMVPGGMGTFDVLMILGLSQLGIDRSQAVVWLLYYRLFYYVTPFMT GVILFLQQAGMKVNQFFDNLPRLFSQKVAHFILVAALYFAGIMMVLLSTVTNLSNVSRLF QVLLPFSFNFLDQTLNLFVGFLLLGLARGISMKVKKAYWPTIILLGFCIVNTVARTTSWQ LIAVYAVILLAVILARKEFYREKFVYSWGALTVDSILFGCLFIGYAVAGYYAARPAGGNQ VINHFLLFPSDDVWFNGLIGLSISLIGLFFLYQYLAETTVTLGEGFEEARLTRFLEKFGG NEGSQFLYLKDYGHFYYQEEGEDQVLFGFQMKFNKCFVLADPIGQREKWTAATLAFMDQA DLLGYQLVFYRISEEYVMNLHDCGFEFMKVGEEGLIQFDEPSTVNQTAWTETVTEKIAAE AADFQFEFYPETISDALYQELERVSADWSRNQKERYFIGGRLDPEYLKCSSVGLVRQKQT VIGFITGKEMEKGKSISYDLLRIRSEAPAFTREYLFTHFIETYQQQGYQLIDIGMAPLAN VGESKYSFLKERFVNIFYKYSYQIYAFQDTRKRKEQYVTSWQPRYFAYPKRTSVLFAFVQ LSLLITKGRHQSVSLVEEAMTEI >gi|308151749|gb|GL476273.1| GENE 33 36818 - 37198 457 126 aa, chain - ## HITS:1 COG:SP1567 KEGG:ns NR:ns ## COG: SP1567 COG0251 # Protein_GI_number: 15901410 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Streptococcus pneumoniae TIGR4 # 2 124 3 125 126 156 63.0 1e-38 MKTIKTKQAPQAIGPYSQAKIVNGLLITSGQIPLDPETGKVVGTTIKEQTNQVLKNIQGI LTEAGSDFAHVVKTTCYLQNMADFTAFNEVYAEYFSAEYPARTTIEISKLPMDVLVEIEI IAEVVA >gi|308151749|gb|GL476273.1| GENE 34 37298 - 38503 971 401 aa, chain - ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 3 388 4 389 390 353 45.0 4e-97 MSFDKAIDRRGTYCTQWDFVEDRFGEADLLPFTISDTDFAVPEAVLATLQERLKHPVFGY TRWNHPQLKEAIQTWYQTRFQTKIEEHWIMYTPTVIYGISALIQLLTNEGEGIILQTPAY DAFFKVIQENKRQVVANELLYQEKCYSIDFIDLEKKLAQPENRCLLLCSPHNPTGRVWEQ WELERMVSLCQQYDVFLLSDEIHMDIVNKGQVHRPITQFDYKKSAIITSGTKTFNFPGLI FAYALIPDNELRDAFQLKLKNADGLSSTSILGMLATMTAYQKCGTWVDELNDYLAENQRY VKDFLQTYLPKIKVTKLEATYLMWLDVSAAVPDVARLQEALVSVGKVAIMDGSIYGGNGQ RFLRLNIGCSQAKLHEGLERMRQGFEAVLQKDGTASALGNN >gi|308151749|gb|GL476273.1| GENE 35 38527 - 40095 1750 522 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 7 425 8 430 450 498 61.0 1e-140 MAVKKKKATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSESMIETVPFLGKPAVKI IFQFMSTIGGFAFAYLPVMFAMAIPLGLVRKEKGIAAFSGFVGYTVMNLAINFYLVQTNR LVDPEQLREAGQGMVFGIQTIEMGVLGGIIAGLIVYKLHNRFYTVQLPDSFAFFSGARFV PIITSLVMAFVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPFGLHHIL VSMIRFTEAGGSAVVAGKEVFGALNIFYAELQNNLPISPSATAFLSQGKMPTFIFGLPAA ALAMYHTAAPANRHKIKGLLLSGVIATAITGITEPIEFLFLFISPLLWLFHVIMTGLGFM VMALLGVVIGNTDGGLLDFVIFGLLQGTYTKWWWVLIVGAIWFVVYYFVFKTVIVTFDLK TPGRDKVLDETEYTDQEVQYKKTGGYDAPGILAALGGQENIQAIDNCITRLRLVLADANK VDDDKLKQLGALGVVHLDAQNVQVIIGTKVTTVRNQLEMILG >gi|308151749|gb|GL476273.1| GENE 36 40244 - 41014 710 256 aa, chain - ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 17 245 22 259 287 90 28.0 4e-18 MSTEGLIALLEKKRNHLSKIENQVLDYILTHMTEISSQTIYEVAQALFVSTATISRTAKH LGYRGFQELKYAIVQSVQSESTESDSRSFQAITQQLIANVQDSFQQMDEAKVAEMLKMIE RANTIEVFGVGGSFPICTDFARKLTFLGKKAYARSDWDEQAAAVKNLDGQDLAIFVSYTG ETKGILAYARVAQEQQVPMISLISTKGSTLEKLSTTTLFAKGTTRYHQRVDLSSRIAVIC LFDTVLLMYAEAKQPR >gi|308151749|gb|GL476273.1| GENE 37 41212 - 41415 253 67 aa, chain + ## HITS:1 COG:no KEGG:EF0026 NR:ns ## KEGG: EF0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 67 89 98.0 6e-17 MNNQRPMFINILLVVLLFLVVGSLFSAVVGIVGSLLWLAVKILVPVAIIVWLVRTISGNN GNCRRRY >gi|308151749|gb|GL476273.1| GENE 38 41463 - 41990 651 175 aa, chain - ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 174 2 169 170 77 33.0 9e-15 MEQRQHHGMDWGSLVLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRNRM KELLGYKAYAPIILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKR VSTGYFWFTLIVDVLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAFR >gi|308151749|gb|GL476273.1| GENE 39 42238 - 42615 416 125 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 123 12 134 135 194 78.0 5e-50 MVQSLNTKVDLVIDATAFTGLTDYGQIMIGDRGFEFYHAKDPRKFIQIPWEEVDYVLASV MFKGKWIPRYAIQTKKNGTYTFASKEPKRVLRAIREYVDPDHMVQSLSFFDVIKRGILSI GKKKK >gi|308151749|gb|GL476273.1| GENE 40 42777 - 43688 1387 303 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 303 1 303 303 502 86.0 1e-142 MAEKIQLTKKDRLAVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEERSAALKR HLEFFNTHPYIASPILGVTLALEEERANGAPVDDVAIQGVKVGMMGPLAGVGDPVFWFTV RPMLGALGASLAMGGNILGPILFFVAWNLIRWSFMWYTQEFGYKAGSKITDDLSGGLLQD ITKGASILGMFVLAALVQRWVSIKFLPIVSQVKLDKGAYIEWDKLPAGGEGMHKAFEQVN QGLALSPTKVTTLQDNLDQLIPGLAPLLLTFLCMWLLKKKVSPIVIILGLFVVGVVGHLI GLL >gi|308151749|gb|GL476273.1| GENE 41 43711 - 44514 1063 267 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 332 86.0 4e-91 MSVISIILVLLVAFLAGMEGILDEFQFHQPLVACTLIGLVTGNLEAGIVLGGTLQMIALG WANIGAAVAPDAALASVASAIILVLGGQGVKGVPSAIAIAVPLAVAGLFLTMIVRTVAVP IVHMMDAAAEKGNIKQVEMLHIFAVCLQGIRIAIPAGALLFIPADTVRNFLESMPAWLTD GMAIGGGMVVAVGYALVINMMATKEVWPFFIIGFVVAAISQLTLIALGALGVALALIYLN LSKMGGSSNSNGGGNSGDPLGDILNDY >gi|308151749|gb|GL476273.1| GENE 42 44549 - 45541 1336 330 aa, chain - ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 166 327 1 162 165 243 84.0 3e-64 MVGIILASHGEFAEGILQSGAMIFGEQENVKAVTLMPSEGPDDVKAKMQEAIASFDNQDE VLFLVDLWGGTPFNQANSLLEDHKDKWAIVAGMNLPMVIEAYASRFSMESAQEIATHILE TAKDGVKVKPEELQPAEAPKAAATEDAQPKGSLPPGTVVGDGKIKFVLARIDSRLLHGQV ATAWTKATQPNRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPISKMIEVAKDPRFGNT KALLLFENPEDVLKVVEGGVEIPEVNVGSMAHSVGKVVVSKVLSMGQEDVDTFDELKAKG IKFDVRKVPNDSKANMDEILKKAKNELANA >gi|308151749|gb|GL476273.1| GENE 43 45776 - 46288 550 170 aa, chain - ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 163 1 161 161 190 63.0 1e-48 MVMDIRLARIDDRLIHGQVATVWAKLTNINRILVVSDSVAHDNLRKALLVQAAPPGVKVN VITVQKMIDVYPDPRFDSFRAMLLFTNPLDVKRVVEGGVQLTSVNIGGMSFSTGKRMITN AVAVDANDLKAFLFLNEQGIELEIRKVAADSQVNLMDLLKKERSKENNAS >gi|308151749|gb|GL476273.1| GENE 44 46490 - 49375 2795 961 aa, chain - ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 469 1 461 464 408 45.0 1e-113 MKRIEKIYQYVKEQTKNLTPMTLTSDAGVTTQEISERLNIQRTNTSKDLNQLVREGRLKK LSGRPVKYVAQVAFQHRPLTKPVKSYREKSMDHSTKTFIEPLVEPVVTTSKTPEVEDIFK KIIGSAGSMKTPVEQAKAAILYPPKGLNCLITGPTGSGKTYFAHAMFQFAKLNQIVAKEK EFVVFNCADYAHNPELLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEG QEMIFYFMDHGVYARLGETVKSHHADVRIICATTENPTSSLLNTFVRRIPIIIQLPNFSD RPAKEKIDLLKVMVSMEAARIQRRISLSEDVVKALIGSVSYGNVGQLKSNVQLVTARGFL NQMEQEELMITMDELTDNIKEGIMQLASNREVLSELSKYLEPQLVVSPNESLVAIQSDAY ELPYNLYEIIGDKAALLKADGLDQELINNFITTDINVHLKSFYKDYGFTFDTENKLAEIV DQRIIDVTKKIYNFAAKRLSYSFQPNFIYAMSLHISSFLKRIQLGKDPKHPLNESIRNMV LDYPTEFETAKEIKNIIESSYQMEIPESESYYLAVLLISLRENPEAGRIGIVVAAHGNST ASSMVQVVSQLLNVDNLKAVDMPLDMPPKEALRKIVEAVGEVNEENGVLLLVDMGSLSTF SEEIVRQTGIDVRTVDMVTTPIVLEAARKTALIDTQLETLHESLKNFHGYADIRQSETKQ IIENWKTRAIIAICASGEGTARRMKELIEEAVLPQIDWHLEVIPLSIVNMKEVLPKIQED YEIIATTGITNPKIGVPYISMENFFSGEAEKIIQQLLAERKEEVMNKPLDEAAAKEICLK YMEQSFTFINGKKIIDLLWSFAKNIQTQLAMPEEYTFYINLIMHTSGMLERILRNDTLTV SEKELGRLVQEPIYPVIVASIETMEEALNMDVPAEEVYFIAQLVKNAQCIEDKITEIDTL D >gi|308151749|gb|GL476273.1| GENE 45 49627 - 51258 1907 543 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 539 540 798 72.0 0 MITVNDVSLQFPDRKLFEEVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPTTGVVSM GPNERLATLKQNHFDYEDYTVLETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELE GEFAELDGWEAEPEAAVLLQGLNIPEELHDQKMSELTAGQKVKVLLAQSLFGKPDVLLLD EPTNGLDTRSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFSKIKLYVGNYDFW LESSQLATKLQAQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPS SRRYPFVGFTPEREIGNDLLQVENVSVTIDGKKILDNISFNLTKDDKVAFIADSDITTTT LFKVIMGEITPDTGSVRWGVTTSQAYLPKDNSKDFEEPLTILDWLRQFAGKEEDDNTFLR SFLGRMLFSGEEVLKPVNVLSGGEKVRVMLSKLMLSKANVLVLDDPTNHLDLESITALND GLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRAETTYDEFLENPEIQKQMDILFS SDY Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:05:44 2011 Seq name: gi|308151748|gb|GL476274.1| Enterococcus faecalis TX4000 genomic scaffold Scfld55, whole genome shotgun sequence Length of sequence - 35573 bp Number of predicted genes - 45, with homology - 40 Number of transcription units - 16, operones - 8 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 43 - 1677 1630 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 2 1 Op 2 1/0.000 - CDS 1713 - 3089 1292 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 3 1 Op 3 . - CDS 3106 - 4170 1122 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 4230 - 4289 4.4 - Term 4224 - 4267 -0.8 4 2 Tu 1 . - CDS 4300 - 4383 59 ## - Prom 4497 - 4556 3.6 + Prom 4259 - 4318 9.3 5 3 Tu 1 . + CDS 4447 - 4791 573 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 4808 - 4874 15.1 - Term 4805 - 4852 9.1 6 4 Tu 1 . - CDS 4889 - 5428 519 ## EF1509 hypothetical protein - Prom 5547 - 5606 5.6 7 5 Tu 1 . - CDS 5641 - 6495 407 ## EF1508 hypothetical protein - Prom 6535 - 6594 3.8 + Prom 6347 - 6406 5.1 8 6 Op 1 . + CDS 6632 - 6742 74 ## 9 6 Op 2 . + CDS 6781 - 7314 311 ## EF1506 hypothetical protein - Term 7288 - 7325 1.5 10 7 Tu 1 . - CDS 7330 - 8322 940 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 8361 - 8420 6.0 - Term 8418 - 8455 1.1 11 8 Op 1 . - CDS 8467 - 9759 1567 ## COG0019 Diaminopimelate decarboxylase 12 8 Op 2 . - CDS 9794 - 9892 59 ## - Prom 10094 - 10153 8.0 + Prom 9862 - 9921 6.8 13 9 Op 1 . + CDS 9975 - 11855 1552 ## COG3855 Uncharacterized protein conserved in bacteria 14 9 Op 2 . + CDS 11950 - 12897 952 ## COG2367 Beta-lactamase class A + Term 12898 - 12960 19.9 - Term 12891 - 12942 17.1 15 10 Op 1 . - CDS 12948 - 13358 515 ## EF1501 hypothetical protein - Term 13372 - 13419 3.2 16 10 Op 2 16/0.000 - CDS 13433 - 14068 815 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 17 10 Op 3 16/0.000 - CDS 14073 - 15449 1841 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 18 10 Op 4 12/0.000 - CDS 15442 - 17223 2140 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 19 10 Op 5 13/0.000 - CDS 17241 - 17552 423 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 20 10 Op 6 . - CDS 17542 - 18543 1136 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 21 10 Op 7 . - CDS 18560 - 19141 846 ## EF1495 V-type ATPase, subunit E 22 10 Op 8 16/0.000 - CDS 19158 - 19631 786 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 23 10 Op 9 . - CDS 19659 - 21638 2171 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 24 10 Op 10 . - CDS 21628 - 21951 567 ## EF1492 V-type ATPase, subunit F - Prom 22200 - 22259 8.9 + Prom 22160 - 22219 10.9 25 11 Op 1 . + CDS 22324 - 22767 585 ## COG1780 Protein involved in ribonucleotide reduction 26 11 Op 2 . + CDS 22826 - 23005 225 ## EF1490 hypothetical protein + Term 23008 - 23074 24.2 - Term 22994 - 23062 24.0 27 12 Tu 1 . - CDS 23071 - 23136 62 ## - Prom 23339 - 23398 7.2 + Prom 23184 - 23243 7.0 28 13 Tu 1 . + CDS 23371 - 23619 246 ## EF1489 hypothetical protein + Term 23622 - 23667 8.2 - Term 23608 - 23653 8.2 29 14 Op 1 . - CDS 23656 - 24141 424 ## EF_C0016 hypothetical protein 30 14 Op 2 . - CDS 24217 - 24687 177 ## gi|315029594|gb|EFT41526.1| hypothetical protein HMPREF9496_01493 - Prom 24740 - 24799 7.5 31 15 Tu 1 . + CDS 24642 - 24812 97 ## - Term 24747 - 24804 14.0 32 16 Op 1 . - CDS 24809 - 26110 1540 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Term 26135 - 26168 2.4 33 16 Op 2 . - CDS 26169 - 26366 202 ## EF1485 hypothetical protein 34 16 Op 3 . - CDS 26363 - 26719 295 ## EF1484 hypothetical protein 35 16 Op 4 . - CDS 26724 - 26852 268 ## EF1483 hypothetical protein 36 16 Op 5 . - CDS 26852 - 27286 310 ## EF1482 hypothetical protein 37 16 Op 6 . - CDS 27321 - 28790 1282 ## EF1481 hypothetical protein 38 16 Op 7 . - CDS 28809 - 29438 408 ## EF1480 hypothetical protein 39 16 Op 8 . - CDS 29422 - 30576 989 ## COG3299 Uncharacterized homolog of phage Mu protein gp47 40 16 Op 9 . - CDS 30569 - 30916 309 ## EF1478 hypothetical protein 41 16 Op 10 . - CDS 30916 - 31248 191 ## EF1477 hypothetical protein 42 16 Op 11 . - CDS 31248 - 32078 532 ## EF1476 hypothetical protein 43 16 Op 12 . - CDS 32079 - 32441 274 ## EF1475 hypothetical protein 44 16 Op 13 . - CDS 32451 - 33008 595 ## EF1474 LysM domain-containing protein 45 16 Op 14 . - CDS 33008 - 35572 2358 ## COG0739 Membrane proteins related to metalloendopeptidases Predicted protein(s) >gi|308151748|gb|GL476274.1| GENE 1 43 - 1677 1630 544 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 3 544 11 549 549 551 52.0 1e-156 MGIMLFVSTVLVGCGTTAETKIDEKATEKTSVSKKVLNLMENSEIGSMDSIFTQDEASIN AQSNVFEGLYQLDEKDQLIPAAAKEMPEISEDGKRYTIKLREDGKWSNGDAVTANDFVFA WRKLANPKNQANYFFLLEGTILNGTAITKEEKAPEELGVKALDDYTLEVTLEKPVPYFTS LLAFSPFFPQNEAFVKEKGQVYGTSSEMIVSNGPFLMKNWDQSAMSWDFVRNPDYYDKEK VKSETIHFEVLKETNTVYNLYESGELDVAVLTGDFAKQNRDNPDYEAIERSKVYSLRLNQ KRNEKPSIFANENVRKALAYALDKKSLVDNILADGSKEIYGYIPEKFVYNPETNEDFRHE AGALVKTDAKKAKEYLDKAKAELNGDVAIELLSRDGDSDRKVAEFIQGQLQETLPGLTIN VKTVPLNNAIELMRKGDYELSVGMWGPDYQDPMTFLESSVSGNRMNYSSPTFDQLIEEAT TKYANDPETRWQTLIKAEKVLVEEDAALIPLYQEARSQLIRPGVKGIQYHNFGATSTYKY AYKE >gi|308151748|gb|GL476274.1| GENE 2 1713 - 3089 1292 458 aa, chain - ## HITS:1 COG:TM0007 KEGG:ns NR:ns ## COG: TM0007 COG1305 # Protein_GI_number: 15642782 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Thermotoga maritima # 5 455 1 438 438 316 41.0 6e-86 MKYDLKYLSVPLPEEIQRVKEFGDFASADIAIDFWLTKELPQALKERLIIEKDVIKMMRM NEYPHSFAKADQMMRDTFQDYQTEELIRLKETGLVDWVYIDGEPYFQLRFLANLIKTNAA YVARLREAESNQLEILRKKELKENIEQMQKNGGRKVRTTIKATIQVKKEFERPGERVRVH LPLPKACQQQSEIEILATSPEATYIAAEDAPQRTLCFETILKENQTFTVEYCYVNRMVYQ QLEENNVDKMQPSFDLEEQLPHIQFMPYLRNLADEIVGDESNPLKKARLIYDFVTTKIHY SFMREYFTISNISEYAATNLKGDCGVQAILFITLCRIAGIPAKWQSGLYVSTHYTGCHDW AQFYIEPYGWLFADLSFGGGAYRDGDRQRWNHYFGNLDVFRMVANSEIQADFQPAKMQLR ADPIDNQRGEFEYENEGLPYACLIVSQERLSMEELPFD >gi|308151748|gb|GL476274.1| GENE 3 3106 - 4170 1122 354 aa, chain - ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 352 13 365 375 278 43.0 1e-74 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLA GTIETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQ LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV GFDIKLRLDANQAWTPKDAVKAIQELADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMAD ESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIG ITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH >gi|308151748|gb|GL476274.1| GENE 4 4300 - 4383 59 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSISHVMEFTDLLKKLIKLEIHFILI >gi|308151748|gb|GL476274.1| GENE 5 4447 - 4791 573 114 aa, chain + ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 9 114 6 110 110 144 72.0 3e-35 MSEQPQQRSTEEVEAIKEDILTALETVIDPELGIDIVNLGLIYEVEFAEETGDTVIKMTL TTMGCPLADVLTEQIHGVLKDIPEVNNIEVKLVWYLAWTTDKMSRYARIALGIR >gi|308151748|gb|GL476274.1| GENE 6 4889 - 5428 519 179 aa, chain - ## HITS:1 COG:no KEGG:EF1509 NR:ns ## KEGG: EF1509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 351 98.0 6e-96 MQFTLLNQGNQAYWEATYIEAFPEEERLPFDQLLTSSQAGKFHLFVIQEADENVGILLNS QIAPEATYVFFFAIDQHHRNKRLGSTVLALLKTRYPKGVLLESEEIGKNAANEAQREKRY QFYERNGVLDTGYLIMDRGLTFHIMFAGASGFGGTQLQFLLDFHPVAKIWKKPSIDGIR >gi|308151748|gb|GL476274.1| GENE 7 5641 - 6495 407 284 aa, chain - ## HITS:1 COG:no KEGG:EF1508 NR:ns ## KEGG: EF1508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 125 284 1 160 160 310 98.0 4e-83 MAEITVKTISAKDDLKKLLLGQEYDHQQPVKNILKARTSNVHIEKYEVVEDVFLKLTGKA TAHKDIMNSFWTTYKIMLQLVYPDFFRPAEVIGENQESYLEKPSEQNLLAVNSKYPPHDS GASAVISDQYLTYFDQVFPDYLPNPVPKKYTWNEFLLDNFTKFERVHQDPQLKRFAELTH SIGNITVVPLGFNSGRSLSFKDYWDYSLEQLSIFLASFHSWESYVHTYEMQPFLNEQYQP VALWKNHLKKDSFILPQNIEEINEYLVQVNQRIEKRGQRIVNRL >gi|308151748|gb|GL476274.1| GENE 8 6632 - 6742 74 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKNAIATYFLDTLCVSYSRGWLRAFFSRKLRTAMV >gi|308151748|gb|GL476274.1| GENE 9 6781 - 7314 311 177 aa, chain + ## HITS:1 COG:no KEGG:EF1506 NR:ns ## KEGG: EF1506 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 177 1 177 177 281 100.0 1e-74 MEMYQVIRYFLNEMEKKIWHALLTLVLFCLYISIFDVPFTIKNTFIGRLLFPKAFMNAGS ANLIFYLISFFGFLWSIFIFAYLLNKTRLKLLNKTFPYLLEILEVCILPLVILFAYIYIY LRVHGEGFSYIRESLLQQELTYSMKWFLCLGSLAPLFFFLSTLNLTKRVRQKKDMES >gi|308151748|gb|GL476274.1| GENE 10 7330 - 8322 940 330 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 105 320 91 305 308 202 49.0 6e-52 MKWLLGLLIIFAIIGVVFSFYIANYFLKIALLKDNPWYHKKGHRLLNPDNFQERETRYTK IEEQQKQEGEAFWTESFAEDRWLKIKDETLYARCFIPYPDNHRWAICVHGYRSNGKRDMA YTALRFAEEGYNVLVPDLRAHGKSSGDKIGMGWLDRLDLLSWLSEVLAIDMEAEIILVGG SMGAATVMMASGEKLPTNVRGLIVDCGYTSVYDEFKYVLHESFHLPAFPILTIANQLALN NYGFQLKTASSVRQLHKNTLPTFFIHGTGDRFVPMTMFEENLAATQGIKKGLIVAKAPHL SSSVYEPENYYSSIFEFLEENCPAVKTISD >gi|308151748|gb|GL476274.1| GENE 11 8467 - 9759 1567 430 aa, chain - ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 2 429 3 430 439 531 58.0 1e-150 MLFGTAKMNRENHLEIGGCDTVKLAQKFGTPLFVYDVAHIRAQARGFKQTLNQLGIKNKV VYASKAFSCLAIYQVLKEEDIACDVVSGGELFTALKGGMEPAEIEFHGNNKTPEELRYAL DNKIGTIVIDNFYEIDLLEELLATRNQTQKVLFRVSPGVDAETHDYILTGQEDSKFGFDV ASGQATEALVRLLSNPSFDVQGVHCHIGSQIFAVEGFLAAVEKMFTILEDWRQVHQFTAR VLNMGGGFGVQYTQQDEPLAPATFVEKIVYSLKGHCEQLGYPLPELWIEPGRSLIAEAGT TIYTVGAQKEVPGVRHFVSVDGGMGDNIRPALYQAVYDGFLANREGHDSVKKVTVVGKYC ESGDVLLRDILLPEVKAGDLLAISSTGAYGYSMASNYNRNPRPAVVFVEDGQAKLVARRE TYEDMTTLDC >gi|308151748|gb|GL476274.1| GENE 12 9794 - 9892 59 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPIIVGYLAKKSNRRKSEKNVENYRKLLGFML >gi|308151748|gb|GL476274.1| GENE 13 9975 - 11855 1552 626 aa, chain + ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 619 47 662 671 662 53.0 0 MATLNRDQQIEEIINLEAILNLPKGTEHFVSDLHGEFEAFDHILRNGSGRIREKVQFLFK QELNAHQMDELCFIIYYPEEKLTLLENESALSYEWWLLTIRRLVEIVRSSSMKYTRSKVR KALPETYGYILEELIYQYDETTTKNGYYQQIIEKIILLGEAKRFVTELAYLIQRLIIDHL HVIGDIYDRGPAPDKIMDRLMSYHSLDIQLGNHDMIWLAAYSGSLACLANVVRICARYGN LDLLEERYTIDLTALKKFSLETYKENPAFAPKKNPYRALTEAEKQVAMRVQQAIAIIQEK LEGQIIGRRPDFNLAHRLRLDKIQGETITFDECRYTLINSCFQTVSEEQPYQLTREEKQI IDDLLTQFQSSPRLTKHMRFLMEKASLYLVYNQNLLIHGCLPLNADGTFQAYTFKGHSYS GKALVDFFQEMLEEAYAQPASTDDYATDCLWYLWCGEGSSLFGKRAMKTFERYFLAEKET HYEEKNPYYSLRDTVEVCERILDEFEVTGENRHIINGHTPVKRTKGESPIKANGTLLVID GGFSKSYQTITGIAGYTLLYNSFGLQLTAHKSFSSKETAILNNQDIHSIKQVIDRPLQRL LVKDTTIGKELLKQSQALQKQMKQNQ >gi|308151748|gb|GL476274.1| GENE 14 11950 - 12897 952 315 aa, chain + ## HITS:1 COG:SP0010 KEGG:ns NR:ns ## COG: SP0010 COG2367 # Protein_GI_number: 15899959 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Streptococcus pneumoniae TIGR4 # 35 287 159 406 422 63 27.0 4e-10 MKKQQLSLYGTIFFLCFFLIVGFFFSSRGEDYAKESEQKVTIDSAKHEKHTKDKEENNSA NTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVAD TVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDT LGGDAKAKREMYQRYLHKSPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSV FHERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTD KLWQLQVSEYPNDNS >gi|308151748|gb|GL476274.1| GENE 15 12948 - 13358 515 136 aa, chain - ## HITS:1 COG:no KEGG:EF1501 NR:ns ## KEGG: EF1501 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 196 100.0 2e-49 MKNEERRKAIALNCQKYESDYARLVEPINELLLNLGAAISEEAAKQIILNVKRYHHGVKY LPECHLDESNQFIEDGLEALKKGDLGNGALQLFGAGLNFASFAAKAQGTKKIDAHQMLAE RFTKLLSVQMDNDNKQ >gi|308151748|gb|GL476274.1| GENE 16 13433 - 14068 815 211 aa, chain - ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 207 1 206 211 196 56.0 3e-50 MARLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIALVKENNELRIQVEQEVT DALSNFVLANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAPLD YGYVNSNSELDQAFAKISSILPKLLALANVEKTCQLLSKEIEKTRRRVNALEYMTIPQLE ETIYYIQMKLEENERGEITRLIKIKSMNKEN >gi|308151748|gb|GL476274.1| GENE 17 14073 - 15449 1841 458 aa, chain - ## HITS:1 COG:SPy0155 KEGG:ns NR:ns ## COG: SPy0155 COG1156 # Protein_GI_number: 15674363 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Streptococcus pyogenes M1 GAS # 1 454 3 456 471 763 81.0 0 MIKEYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGT SNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVA RDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLNSEEEFAVV FAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKG MHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQ IPILTMPEEDKTHPIPDLTGYITEGQIILSRELYKSGIQPPIDVLPSLSRLKDKGTGEGK TRGDHAATMNQLFSAYAQGKQAKELAVILGESALSDVDKIYAAFAQRFEEEYVNQGFDTN RSIEETLDLGWELLSMLPRTELKRIKEDMLDQYLTEGK >gi|308151748|gb|GL476274.1| GENE 18 15442 - 17223 2140 593 aa, chain - ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 591 591 853 71.0 0 MQIGKIVKVSGPLILAENMSDASIQDICHVGDLGVIGEIIEMRGDVASIQVYEETTGIGP GEPVISTGEPLSVELAPGLIAEMFDGIQRPLDTFQEVTHSNFLGRGVKIDALDREKKWTF EPTVAVGEEVSAGDIVGVVQETPIIQHKIMVPFGVSGTIAEIKAGDFAIDETVYSVETAK GTESFSMMQKWPVRRGRPILEKLSPKVPMVTGQRVIDTFFPITKGGAAAVPGPFGAGKTV VQHQIAKWADVDLVVYVGCGERGNEMTDVLNEFPELIDPTTGESLMNRTILIANTSNMPV AAREASIYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGS RLAEYYERAGQVIALGKDHREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSQLA QKRHFPSINWLQSYSLYSTEVGQYLDLELQGNWAAMVAEGMRILQEESQLEEIVRLVGID SLSDKDRLTLETAKSLREDYLQQNAFDDVDTFTSRTKQAKMLQLILTFGEEGQKALSLGT YFSELMAGTVEIRDRIARSKYLPEEELEKLDRLQAEIKTTIKEIIAEGGMTND >gi|308151748|gb|GL476274.1| GENE 19 17241 - 17552 423 103 aa, chain - ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 3 103 5 105 105 99 48.0 1e-21 MGYKIGVIGDKNSILPFKLFGFEVHHAISEMQVREAIETMAKNKFGVIFITEEASTLAEE TIERYKEQVTPAIILIPSHNGTIGIGLSEIEKNVEKAIGQNIL >gi|308151748|gb|GL476274.1| GENE 20 17542 - 18543 1136 333 aa, chain - ## HITS:1 COG:SPy0151 KEGG:ns NR:ns ## COG: SPy0151 COG1527 # Protein_GI_number: 15674361 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Streptococcus pyogenes M1 GAS # 4 330 2 331 332 122 29.0 9e-28 MRKPTYHQINPLIRLKETELLSEQQFQQLLEAETVEDVKNMLKSTVYQPYLTETFEEKFD YHSSEALGSLYRWLYEMAPEPAVVTLYTMRFTFHNLKILTKAERTGKDFDYLYLEDGRYS LNTVKSAIHTKNSSELEPALLEVIRDVFAYLEEGGLPQAIDILYDRAFLQQQRKLADELG YEELTKEVIAFIDLTNLSTMARGIVQHQNSNFLSTVLSSAGSLSKKELLTYAEKSLVEFT AFVRTTNYGQLLEKIINKETNELNLLAFEKLKDDYLTSMYENGRTVAFGPLPLLAFLNAK EVEWKNLRLILVGKHSGFSNEKIRERMRKVNGV >gi|308151748|gb|GL476274.1| GENE 21 18560 - 19141 846 193 aa, chain - ## HITS:1 COG:no KEGG:EF1495 NR:ns ## KEGG: EF1495 # Name: not_defined # Def: V-type ATPase, subunit E # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Methane metabolism [PATH:efa00680]; Metabolic pathways [PATH:efa01100] # 1 193 1 193 193 255 99.0 8e-67 MDAIEKIISEIKQQGKQEVDAYVTSEQTRIDQEFQAAQQEILLKQEHEIEKRQQQLLKEF KQRQQRQTLEIRQDALNKKQAYLNQLFDEVVLKMSEWSAEEFQQFMKAQLGSLELTGKAT ILLGEYSQTKVTQEWLTALSDATVQWELSEEVVPKESGFIVAKDGLDYNFLFSALVEEIQ KTEGFKVAEKLFS >gi|308151748|gb|GL476274.1| GENE 22 19158 - 19631 786 157 aa, chain - ## HITS:1 COG:SP1321 KEGG:ns NR:ns ## COG: SP1321 COG0636 # Protein_GI_number: 15901175 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Streptococcus pneumoniae TIGR4 # 10 156 12 158 158 142 60.0 3e-34 MMDYLINNNGGIVFAVLGMAMATIFAGIGSAKGVGFTGEAAAALTTEQPEKFGQALILQL LPGTQGLYGFVIAFLIYINLGNDMSMVQGLNYFVAALPIAFAGLFSGIAQGRVAAAGIQI LAKKPEHATKGIIYAAMVETYAILGFVISFLLVLNVK >gi|308151748|gb|GL476274.1| GENE 23 19659 - 21638 2171 659 aa, chain - ## HITS:1 COG:SP1322 KEGG:ns NR:ns ## COG: SP1322 COG1269 # Protein_GI_number: 15901176 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Streptococcus pneumoniae TIGR4 # 1 659 1 662 663 357 35.0 5e-98 MAVSKMEKMTIIAAAEKEAAILQAIQGLQIVEVKRIFHSPEEEQALKSQYSFLQAEQSTE QLRKYETMLQQLQELLLFLTRSSGKGLKIKRKVYTLEELEQTFDEETLQSYLTELKNIQE SLKQIQTDRQGLEAEEELLGRWQYLDILPHKQQLKSSYVVHGSINLANKASFLSALSQWP TVYFEEIYQSMHHSYFTLVYLKEHQQSVTELLNQYSFEPLQYRYDVPPKEAYQQVKERYE ILQKEEKALKQQLASYHDFYETFCLAEEVLLAVIQREQARQHLLNASSFFILQTWIPVEE KADILTAIEEKVPKDEIALTFENPTKAEIETDIPVKLANNKLVQPFEMLTEMYSLPKYEE VDPTPAMMPFYLVFFGMMVADIGYGLLMLLLSIIALKAFVLPRGMKRFADFFLILSFPTI IWGFIYGSFFGAALPPTMFGIKSPFPILSTTEDVNTILILSVIFGFIQLVVGLMINGIQL SKQKRYLDSINESYAWLGILFGLALLVVGKLVVKNEGLFTAGAILASLSAIAIIVIPMIQ SKAKLKGLAKGLYGLYGVTGYVGDLVSYTRLMALGIAGGSIASAFNMLVEFMPPVARFSV GILLLIVLHALNIFLSLLGAYVHGARLQYVEFFGKFYTGGGRAFNPLKTKEKYVNVEKK >gi|308151748|gb|GL476274.1| GENE 24 21628 - 21951 567 107 aa, chain - ## HITS:1 COG:no KEGG:EF1492 NR:ns ## KEGG: EF1492 # Name: not_defined # Def: V-type ATPase, subunit F # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 112 100.0 4e-24 MVQEVLEQIKAAEDAVEEHRQQAKMNCRLYEEQKQERLAELRQESEEAVEKVLTDSLATQ EKMLQLEKEQLLDETKRTEQALHERYEANKEQVIDSIIERVKDVYGS >gi|308151748|gb|GL476274.1| GENE 25 22324 - 22767 585 147 aa, chain + ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 1 145 4 144 160 138 47.0 3e-33 MNIRYISISGNTRSFVQRLTTYSEEQHQHNEKNPTITFKEISENSPLEVETEPFFTFVPT YLDGGDGINNGNTEILTEVMREYLAFENNYRYCSGVVGSGNKNFNHQYCLTAKQYAEQFN FPFLADYELRGTQADIERIYAILKENQ >gi|308151748|gb|GL476274.1| GENE 26 22826 - 23005 225 59 aa, chain + ## HITS:1 COG:no KEGG:EF1490 NR:ns ## KEGG: EF1490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 85 100.0 5e-16 MRNTWLAEQLQSISEEPNSFIIEETIKYIEQLEDDNESLQVALEGTIWSPKKWNEPLEK >gi|308151748|gb|GL476274.1| GENE 27 23071 - 23136 62 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFALLGKPGFEELAKDLNARL >gi|308151748|gb|GL476274.1| GENE 28 23371 - 23619 246 82 aa, chain + ## HITS:1 COG:no KEGG:EF1489 NR:ns ## KEGG: EF1489 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 129 96.0 6e-29 MKTNYVGVVDKIRMLSMYPKMLVRFSLVTQDETINCIVSKNELANTLLMLPEQSELAVYG HLNKLNQLVIEKMLVRKTLISA >gi|308151748|gb|GL476274.1| GENE 29 23656 - 24141 424 161 aa, chain - ## HITS:1 COG:no KEGG:EF_C0016 NR:ns ## KEGG: EF_C0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 157 1 161 168 205 71.0 4e-52 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELTEAIKNTDEYHARNIERLPQQSQRQIE YFLDRSIKQNKVLEIQLNSLDEYDRVKPHVFGVFRGMAEFDVVLIGENEVDFYDIRNIQI HNFTKWSDEHIPEEKPFEEETEHCDTIDEFVDEYFDDTWIE >gi|308151748|gb|GL476274.1| GENE 30 24217 - 24687 177 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315029594|gb|EFT41526.1| ## NR: gi|315029594|gb|EFT41526.1| hypothetical protein HMPREF9496_01493 [Enterococcus faecalis TX4000] # 1 156 1 156 156 315 100.0 6e-85 MLTKEIIENFGFPESLKRMDLVYCFDDELGDEVVMGRGCHCEETSVKFFLYNPNNHDTVF TMDFYLKERHKKSLFNPIQIDEPIAYLQHIGTNTSYRGRGIASYYVEKLVEFCENNGRRF LLLDIAPSEKNLGLDAIQLEKFYKSKETDKVKICFV >gi|308151748|gb|GL476274.1| GENE 31 24642 - 24812 97 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLEIQNFQLFLLLTSIIISHLILNKVLIIFTLYIIIPKQKKTYLSQREVGLLLIS >gi|308151748|gb|GL476274.1| GENE 32 24809 - 26110 1540 433 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 254 214 360 444 129 43.0 8e-30 MKKKILVGALIALFFMPLNVFAAKGDQGVDWAIYQGEQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLPRIQTPKNSIVALDFE HGALASVPDGYGGYVSSDAEKAANTETILYGMRRIKQAGYTPMYYSYKPFTLNHVNYQQI IKEFPNSLWIAAYPIDGVSPNPLYAYFPSMDGIGIWQFTSAYIAGGLDGNVDLTGITDSG YTDTKNPETDTPATDAGEEIEKTPNSDVKVGDTVKVKFNVDAWATGEAIPDWVKGNSYKV QEVTGSRVLLEGILSWISKGDIELLPDATTVPNKQPEATHVVQYGETLSSIAYQYGTDYQ TLASLNGLVNPNLIYPGQVLKVNGSAVSNVYTVQYGETLSSIAAKLGTTYQELATLNGLS NPNLIYPGQTLNY >gi|308151748|gb|GL476274.1| GENE 33 26169 - 26366 202 65 aa, chain - ## HITS:1 COG:no KEGG:EF1485 NR:ns ## KEGG: EF1485 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 110 96.0 2e-23 MKINWKHKFTSRKFWAAVTGVIVALLAVFNVDDLTSEKVVTLVAAIGLLAAYIVGEGFVD SNRGN >gi|308151748|gb|GL476274.1| GENE 34 26363 - 26719 295 118 aa, chain - ## HITS:1 COG:no KEGG:EF1484 NR:ns ## KEGG: EF1484 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 187 100.0 2e-46 MELEQKVKEHEKRLGDHDREIGRLDRRTMTLQEQLNANLVRLDESNKFLREQNMKQMEQN SEILNAILNRNSEADERKDELKKLNTENIWKVILAIFVSSGAITILFNWLSTFLGGAK >gi|308151748|gb|GL476274.1| GENE 35 26724 - 26852 268 42 aa, chain - ## HITS:1 COG:no KEGG:EF1483 NR:ns ## KEGG: EF1483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 42 1 42 42 72 97.0 4e-12 MFTFDDVKLMYDWGLYTDDEVKLFVPTCITEEELNEIVGKEG >gi|308151748|gb|GL476274.1| GENE 36 26852 - 27286 310 144 aa, chain - ## HITS:1 COG:no KEGG:EF1482 NR:ns ## KEGG: EF1482 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 234 95.0 8e-61 MKKIWKFGRTGGTELQVSDDFPVQVPFTDAAPLTNVNLEDQFFIPSENRWKEISNQLDKE NLDNLSILYKNLEKDNELLKAKADNLALLNSKLMLNDLNIQKENTLLKAKANDLAEIGAK SMLSIVQITGEIGKINEQLKGGAK >gi|308151748|gb|GL476274.1| GENE 37 27321 - 28790 1282 489 aa, chain - ## HITS:1 COG:no KEGG:EF1481 NR:ns ## KEGG: EF1481 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 339 1 339 547 609 93.0 1e-172 MKFTKELPVWLAPGIKPPESLTSDGWKASQKPPADYFNWFFSRTHGALKELQDSATHIED FNAHKSNISNPHAVTATQVGLGNVLNQKQATKSEFDAHDQDNIRHITDVERNSWNGKAEK NHTQPWSTITGIPDSTITKKGIVKLTDSVTSTDILTAATPNSVKQVNDNANAAMASASSV NDNLTSHKIDYKNPHKVTSAQVGSYSKTETDDLFINKSEAENGLLVRKNIEITDLNNAKE PGIYSIPATGVENKPLPNSGSLFVSKDPGGVRQLFQTERTIVIRQFGGVPSNWTDWKEVA FTTNVVNLTEPQKIGGTKDFDEIPLVNQTPVMLQKEQLYEAWYTPGEDHNDLHNRSRFSI GAEYSNVGKRLGLPMRSNPLQWNAGRWLATVLRDCKLNVRAVVKIQAEGSRGIPYAYVHL GKGYEEATGDMGTAGGTGAITGINYKNFIPVELNVSLKKGDYFSFYLEVLEGKNINFVQM ISAHITELV >gi|308151748|gb|GL476274.1| GENE 38 28809 - 29438 408 209 aa, chain - ## HITS:1 COG:no KEGG:EF1480 NR:ns ## KEGG: EF1480 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 209 1 209 209 402 99.0 1e-111 MTKKLRDYLPDLFNRENSNISKLLEIIEFEIKDLTDLLNKVANWRSIDEARGKGLDELGG NVGQARGKTTDEIYRVLIRGKVARNTSDGSIDKMLHAIATSLNCHPSDIHIISANETVDE KEPACVIIKKAPLDYLNSSGLSISQFLQIVESISAGGIRVAYVNLEGTFSFSSTTDIEIS KEGFADIDGNIGGTLGGVFIPENDYKLPL >gi|308151748|gb|GL476274.1| GENE 39 29422 - 30576 989 384 aa, chain - ## HITS:1 COG:lin1710 KEGG:ns NR:ns ## COG: lin1710 COG3299 # Protein_GI_number: 16800778 # Func_class: S Function unknown # Function: Uncharacterized homolog of phage Mu protein gp47 # Organism: Listeria innocua # 1 379 1 379 383 394 54.0 1e-109 MLDENGFKRKTYDEILYDMSEKAKALFGSDVNVSGHSVLGIIIRIVAWFLSISHELTERV YYSGFISQATGVSLDRLGANSGIYRNPATVAMVELEFSGKPGYIINEGVRFSTENKVMFQ MIDIVKIDDNGFGKGRAISLEENASSNVPANTIIVQVEPTEEISSVNNPARAEGGAERET DKAYRDRIGISVRGNPGPPINGILTALLEVSGVRTASVVENKTMETDSYGNPPKSVHVHI LGGVKDDIGQAIFKSVAAGIDTVGNQEVEVKDLGGFSHIVKFDYAKSVPIFVNISIQVDS KFEKNGQEEIKVIVNNYINNLTMGEVVRFSYIYPLIYQIPGVVVADVKIGLSTETTEAKD INLNPNESAECKTENVVITSDQKA >gi|308151748|gb|GL476274.1| GENE 40 30569 - 30916 309 115 aa, chain - ## HITS:1 COG:no KEGG:EF1478 NR:ns ## KEGG: EF1478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 115 185 100.0 4e-46 MRDLKIVNGDLSFIDYGILLVEGDLELAQSVFMILSIRLEEFKLDTSVGLESDNMFGKNY NEDYLKQDITEAILDQEPRINSIENIEIVRNNRQLNITVEMLSTLGDEVEVVIRA >gi|308151748|gb|GL476274.1| GENE 41 30916 - 31248 191 110 aa, chain - ## HITS:1 COG:no KEGG:EF1477 NR:ns ## KEGG: EF1477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 202 100.0 5e-51 MKETDLAFFRSFKNRILKEINVMQLCRVVTVKGARADVQPMALKSDGGKRALILNALITK HCQSDISQGAVVVVVFCDRDIDNYRSSADYSLSSDRMHSQNDAVIMGVIA >gi|308151748|gb|GL476274.1| GENE 42 31248 - 32078 532 276 aa, chain - ## HITS:1 COG:no KEGG:EF1476 NR:ns ## KEGG: EF1476 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 276 1 276 276 546 100.0 1e-154 MGNTQWQRLLQIEIHDKNGKNRVLLRADSGRLDRLEIHFTAPFSDSPNPSEVSVTIYNLN KKSIDFIKKGNPVYIHAGYAGTSNGVITSGTIAEVKPSVLNGVDRATTFTFLEGKDYSEQ KEVNITFNNGTDAHTIINRVAREANIPLSEIKLKNNKIYGSGYTADGQAMMVLEEISKAC DTSLYFKRGQLVIKNFRDGNKERYRLSPETGLINQPTKVESHDYTGWSVECLLQHKITTG TAVYIDSKNVKGNFYVKNGQHSYDGSRFVTTCEVVT >gi|308151748|gb|GL476274.1| GENE 43 32079 - 32441 274 120 aa, chain - ## HITS:1 COG:no KEGG:EF1475 NR:ns ## KEGG: EF1475 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 221 100.0 6e-57 MSLRAYIPIDKYSLPEKFEIPLGNTNYIFEVDYNQTEKFFTVDLYDIDHTPIAIGERMVI DERLWQDIVDTRLPSADLVPMDESGASKEITFENFGIQVFLYIDDLPPNYNVPSLEREDN >gi|308151748|gb|GL476274.1| GENE 44 32451 - 33008 595 185 aa, chain - ## HITS:1 COG:no KEGG:EF1474 NR:ns ## KEGG: EF1474 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 185 1 185 185 333 100.0 2e-90 MGYIQSGKSKVEIVNVSETVTSAANVSQYPVESGAPITDNMMYTGGPVTISGWILAKNGN AAEQAYNTLVAWQKDVRWIVYRGRSYFKNAVIQDISKGYDTVENGFTITITLQPIRVAKT IWEKIPQPPVAKQPSKPSNAVYVTVQPGNTYWGWWQQYGTSIQQLRDWNKWPDRFIPIGA RARVK >gi|308151748|gb|GL476274.1| GENE 45 33008 - 35572 2358 854 aa, chain - ## HITS:1 COG:lin1716_2 KEGG:ns NR:ns ## COG: lin1716_2 COG0739 # Protein_GI_number: 16800784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Listeria innocua # 409 639 8 225 340 149 43.0 2e-35 YLSSLILQSAKLEKQEYDESITATEYYTNRINEIKEKARLENRELSENDKKEIESLEKTS AAAVRAVEEKHAAANKSIHEDMKNQAVVALSDSAKEQKIIMGNLKNASGEISAQQAADAV AASYKAKEGTIKSANEKYEETKRILDEERYVNGTITQQQYDDALKKAQEQRDGVVKEAEK QHEDVVTQAKKQAEGHLEQVDWETGQTLSKWEVFKKDSKKKFKEIWDGTVESAKSFGEGF SKTISNTVDGALKIWEDFKTGLARKINAVTSGINVVLKFFGLDEIPPWTPTADSKADVSG YKQGKGGKMHAAGSRGASYSGPSLVGEEGVELAYNKSTSSMRLLGSNGPEVTNIASGERI LNHSDTKAVLNGGMGQGTVLPGFHKGKGNGLSDFVDSAKDFGANTVDKIKDFGSNAVDKA KEVGTKAIEKTKDIAETAKDWLSDPIGKVTGLFNKHNTYKKGKNIQGLGHGVMNKLKDTS SEWVKNKLEAFKGFFDSEDGGAFGSGAFAPHFGSPFVRTSDYGKRPGLYGDFHTGIDYAA PTGTPIPAQYPGLVDWVQSSSIGLGEHVGIKVADNLWAMYGHMSRIRAKMGDKVKAGQIV GDVGSSGWSTGPHVHYELRKGGPNGQHVNPDTYGGAAGGVAVGAAGWGPQVRKAAKQMNQ QVSDAEVNGILAQIQRESSGNQSIIQSSAVWDVNTASGNPARGLLQYIPQTFNAYKVRGY ENILNGFHQLMAFFNNSNWRTDLPYGHSGWGPTGHRLRAYAKGGRPSKGETVLVGENGPE LFEADTAGTVHPHEKTKALFNQGSPSVNFSPNITINVGNNSDKSVVGDIKEAVRQALEDE YAKLLNILGTGEVV Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:08:59 2011 Seq name: gi|308151747|gb|GL476275.1| Enterococcus faecalis TX4000 genomic scaffold Scfld56, whole genome shotgun sequence Length of sequence - 313908 bp Number of predicted genes - 308, with homology - 301 Number of transcription units - 155, operones - 74 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 173 - 232 8.8 1 1 Tu 1 . + CDS 266 - 355 161 ## + Prom 431 - 490 9.6 2 2 Tu 1 . + CDS 562 - 822 88 ## gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 + Term 1007 - 1071 5.4 + Prom 921 - 980 4.6 3 3 Tu 1 . + CDS 1096 - 2388 983 ## COG3328 Transposase and inactivated derivatives 4 4 Tu 1 . - CDS 2643 - 2867 145 ## EF1853 hypothetical protein - Prom 2909 - 2968 12.7 + Prom 2913 - 2972 7.6 5 5 Tu 1 . + CDS 3005 - 4267 793 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 4314 - 4371 1.5 + Prom 4287 - 4346 7.3 6 6 Tu 1 . + CDS 4439 - 6274 1614 ## COG1874 Beta-galactosidase + Prom 7134 - 7193 7.8 7 7 Tu 1 . + CDS 7258 - 8436 612 ## COG0582 Integrase + Term 8604 - 8641 9.1 + Prom 9035 - 9094 11.6 8 8 Op 1 . + CDS 9134 - 9238 136 ## 9 8 Op 2 . + CDS 9162 - 9329 102 ## gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 + Prom 9357 - 9416 4.1 10 9 Op 1 . + CDS 9495 - 9578 101 ## 11 9 Op 2 . + CDS 9594 - 9902 212 ## EF1844 hypothetical protein + Term 10055 - 10123 22.1 12 10 Tu 1 . - CDS 10183 - 10884 691 ## COG0726 Predicted xylanase/chitin deacetylase + Prom 11215 - 11274 8.7 13 11 Op 1 . + CDS 11312 - 11833 377 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 14 11 Op 2 . + CDS 11763 - 12833 768 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain + Prom 12891 - 12950 3.9 15 12 Op 1 . + CDS 13068 - 14600 1738 ## COG3227 Zinc metalloprotease (elastase) 16 12 Op 2 . + CDS 14649 - 15503 708 ## COG3591 V8-like Glu-specific endopeptidase + Term 15509 - 15571 13.1 - Term 15497 - 15559 13.1 17 13 Tu 1 . - CDS 15651 - 16481 664 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 16705 - 16764 5.9 18 14 Tu 1 . + CDS 16873 - 17727 708 ## COG0583 Transcriptional regulator + Term 17755 - 17821 11.1 + Prom 17931 - 17990 4.2 19 15 Op 1 . + CDS 18109 - 19497 1101 ## COG0477 Permeases of the major facilitator superfamily 20 15 Op 2 . + CDS 19539 - 21599 1866 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 21 15 Op 3 . + CDS 21526 - 21795 131 ## EF1812 hypothetical protein + Term 21930 - 21975 1.1 + Prom 21947 - 22006 11.6 22 16 Op 1 5/0.049 + CDS 22100 - 22945 747 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 23 16 Op 2 . + CDS 22935 - 23837 831 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 24 16 Op 3 . + CDS 23770 - 23901 102 ## gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 + Term 23940 - 23995 17.1 + Prom 24025 - 24084 9.8 25 17 Op 1 7/0.000 + CDS 24223 - 24954 759 ## COG2188 Transcriptional regulators 26 17 Op 2 . + CDS 24966 - 26138 1405 ## COG2222 Predicted phosphosugar isomerases 27 17 Op 3 3/0.122 + CDS 26161 - 27156 1261 ## COG3684 Tagatose-1,6-bisphosphate aldolase 28 17 Op 4 . + CDS 27172 - 28113 917 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 29 17 Op 5 1/0.317 + CDS 28176 - 29960 1752 ## COG1874 Beta-galactosidase 30 17 Op 6 13/0.000 + CDS 29957 - 30436 601 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 31 17 Op 7 13/0.000 + CDS 30450 - 31349 1385 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 32 17 Op 8 4/0.073 + CDS 31336 - 32145 934 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 33 17 Op 9 . + CDS 32165 - 32572 485 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 32626 - 32677 13.2 + Prom 32630 - 32689 5.4 34 18 Tu 1 . + CDS 32722 - 36696 4006 ## EF1800 hypothetical protein + Prom 37144 - 37203 4.6 35 19 Tu 1 . + CDS 37234 - 38388 944 ## COG0628 Predicted permease + Term 38396 - 38432 3.4 + Prom 38421 - 38480 4.1 36 20 Tu 1 . + CDS 38509 - 39153 528 ## EF1797 hypothetical protein - Term 39116 - 39174 8.6 37 21 Tu 1 . - CDS 39200 - 39769 712 ## EF1796 putative lipoprotein - Prom 39800 - 39859 6.3 + Prom 39905 - 39964 4.9 38 22 Tu 1 . + CDS 39990 - 40442 709 ## COG4876 Uncharacterized protein conserved in bacteria + Prom 40534 - 40593 6.6 39 23 Tu 1 . + CDS 40633 - 41652 1223 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 41658 - 41703 6.8 + Prom 41684 - 41743 6.0 40 24 Op 1 . + CDS 41787 - 42107 453 ## EF1792 hypothetical protein 41 24 Op 2 . + CDS 42170 - 43810 1675 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 43814 - 43876 13.1 - Term 43806 - 43855 11.5 42 25 Tu 1 . - CDS 43908 - 44783 330 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 44985 - 45044 8.4 + Prom 44844 - 44903 5.1 43 26 Tu 1 . + CDS 44932 - 45798 1085 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 45830 - 45862 2.5 + Prom 45884 - 45943 8.7 44 27 Op 1 29/0.000 + CDS 45972 - 46460 549 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 45 27 Op 2 1/0.317 + CDS 46453 - 47577 901 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) + Term 47583 - 47611 -0.0 + Prom 47586 - 47645 9.2 46 28 Op 1 15/0.000 + CDS 47729 - 48442 716 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 47 28 Op 2 23/0.000 + CDS 48456 - 48707 392 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 48 28 Op 3 9/0.000 + CDS 48708 - 49382 629 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 49 28 Op 4 10/0.000 + CDS 49379 - 51598 2195 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 50 28 Op 5 13/0.000 + CDS 51574 - 53013 1312 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 51 28 Op 6 21/0.000 + CDS 53015 - 54046 761 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 52 28 Op 7 10/0.000 + CDS 54043 - 54615 266 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 53 28 Op 8 17/0.000 + CDS 54612 - 56153 1588 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 54 28 Op 9 . + CDS 56172 - 57419 1294 ## COG0151 Phosphoribosylamine-glycine ligase + Term 57434 - 57481 4.2 + Prom 57453 - 57512 8.8 55 29 Op 1 . + CDS 57547 - 57876 314 ## EF1776 hypothetical protein 56 29 Op 2 . + CDS 57897 - 58631 436 ## EF1775 hypothetical protein + Term 58635 - 58686 14.2 - Term 58628 - 58666 4.2 57 30 Tu 1 . - CDS 58671 - 59192 454 ## COG4708 Predicted membrane protein - Prom 59228 - 59287 2.0 58 31 Op 1 . - CDS 59338 - 60102 246 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 59 31 Op 2 . - CDS 60186 - 60419 442 ## EF1772 hypothetical protein 60 31 Op 3 . - CDS 60409 - 61071 635 ## COG1739 Uncharacterized conserved protein - Prom 61095 - 61154 9.8 61 32 Tu 1 . + CDS 61213 - 61500 304 ## EF1770 hypothetical protein + Prom 61511 - 61570 6.1 62 33 Op 1 . + CDS 61621 - 61956 470 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Term 61960 - 62009 13.3 + Prom 61973 - 62032 4.3 63 33 Op 2 6/0.049 + CDS 62056 - 63372 815 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) + Term 63500 - 63545 1.2 + Prom 63537 - 63596 3.7 64 34 Tu 1 . + CDS 63629 - 64048 281 ## COG1040 Predicted amidophosphoribosyltransferases + Term 64124 - 64169 3.1 + Prom 64060 - 64119 4.5 65 35 Op 1 7/0.000 + CDS 64187 - 64738 669 ## PROTEIN SUPPORTED gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) + Term 64751 - 64792 8.9 + Prom 64864 - 64923 6.6 66 35 Op 2 . + CDS 64994 - 67531 3158 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 67544 - 67585 6.4 67 36 Op 1 . + CDS 67608 - 67682 68 ## 68 36 Op 2 4/0.073 + CDS 67726 - 68709 1042 ## COG1186 Protein chain release factor B + Prom 68725 - 68784 8.8 69 37 Op 1 28/0.000 + CDS 68815 - 69501 357 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 70 37 Op 2 . + CDS 69494 - 70378 941 ## COG2177 Cell division protein + Term 70380 - 70428 16.7 + Prom 70464 - 70523 11.0 71 38 Op 1 39/0.000 + CDS 70554 - 71408 1049 ## COG0226 ABC-type phosphate transport system, periplasmic component + Prom 71435 - 71494 4.3 72 38 Op 2 38/0.000 + CDS 71531 - 72451 1094 ## COG0573 ABC-type phosphate transport system, permease component 73 38 Op 3 41/0.000 + CDS 72451 - 73335 955 ## COG0581 ABC-type phosphate transport system, permease component 74 38 Op 4 7/0.000 + CDS 73352 - 74161 306 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 75 38 Op 5 32/0.000 + CDS 74154 - 74930 284 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 76 38 Op 6 . + CDS 74945 - 75622 786 ## COG0704 Phosphate uptake regulator + Term 75672 - 75709 -0.7 + Prom 75639 - 75698 4.7 77 39 Op 1 4/0.073 + CDS 75832 - 77433 2113 ## COG3595 Uncharacterized conserved protein + Term 77441 - 77496 8.5 78 39 Op 2 . + CDS 77508 - 77831 445 ## COG1983 Putative stress-responsive transcriptional regulator 79 39 Op 3 . + CDS 77831 - 78187 308 ## EF1751 hypothetical protein + Term 78193 - 78241 11.1 80 40 Tu 1 . - CDS 78223 - 79185 952 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 79212 - 79271 6.4 + Prom 79249 - 79308 6.3 81 41 Op 1 10/0.000 + CDS 79395 - 80330 1127 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 82 41 Op 2 . + CDS 80345 - 81181 812 ## COG0682 Prolipoprotein diacylglyceryltransferase 83 41 Op 3 3/0.122 + CDS 81250 - 82272 1388 ## COG0240 Glycerol-3-phosphate dehydrogenase 84 41 Op 4 . + CDS 82284 - 83180 1226 ## COG1210 UDP-glucose pyrophosphorylase + Term 83188 - 83242 7.3 + Prom 83268 - 83327 7.2 85 42 Op 1 3/0.122 + CDS 83358 - 83789 610 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 86 42 Op 2 . + CDS 83805 - 84392 1114 ## COG4980 Gas vesicle protein + Term 84463 - 84515 17.4 - Term 84447 - 84504 17.2 87 43 Tu 1 . - CDS 84513 - 85616 1459 ## COG0006 Xaa-Pro aminopeptidase - Prom 85807 - 85866 7.5 + Prom 85708 - 85767 5.8 88 44 Tu 1 . + CDS 85831 - 86832 1324 ## COG1609 Transcriptional regulators + Term 86852 - 86918 16.8 + Prom 86893 - 86952 4.2 89 45 Op 1 . + CDS 87019 - 87714 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 90 45 Op 2 . + CDS 87707 - 88807 547 ## gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein + Term 88910 - 88961 11.5 - Term 88889 - 88957 12.2 91 46 Tu 1 . - CDS 88993 - 91371 2332 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 91400 - 91459 8.3 92 47 Tu 1 . + CDS 91583 - 92845 727 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Prom 92944 - 93003 6.1 93 48 Op 1 . + CDS 93026 - 93688 587 ## EF1738 hypothetical protein 94 48 Op 2 . + CDS 93688 - 94155 382 ## EF1737 hypothetical protein 95 48 Op 3 . + CDS 94166 - 95059 1131 ## COG0648 Endonuclease IV + Term 95069 - 95114 7.2 + Prom 95159 - 95218 8.0 96 49 Tu 1 . + CDS 95254 - 95472 342 ## COG3763 Uncharacterized protein conserved in bacteria + Term 95501 - 95549 7.0 + Prom 95511 - 95570 3.6 97 50 Op 1 35/0.000 + CDS 95670 - 97421 200 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 98 50 Op 2 . + CDS 97421 - 99205 191 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 99241 - 99289 7.0 + Prom 99243 - 99302 3.9 99 51 Op 1 . + CDS 99322 - 100122 609 ## COG0710 3-dehydroquinate dehydratase 100 51 Op 2 . + CDS 100140 - 100634 642 ## COG2606 Uncharacterized conserved protein 101 52 Tu 1 . + CDS 100699 - 100782 57 ## + Term 100788 - 100830 -0.7 - Term 100554 - 100587 -0.7 102 53 Tu 1 . - CDS 100764 - 101171 402 ## COG0328 Ribonuclease HI - Prom 101279 - 101338 7.2 + Prom 101167 - 101226 6.2 103 54 Tu 1 . + CDS 101272 - 101733 321 ## EF1727 EbsA protein - Term 101706 - 101760 9.2 104 55 Tu 1 . - CDS 101838 - 102044 222 ## COG1278 Cold shock proteins - Prom 102076 - 102135 6.3 + Prom 102117 - 102176 6.3 105 56 Tu 1 . + CDS 102223 - 103893 2258 ## COG2759 Formyltetrahydrofolate synthetase + Prom 103907 - 103966 4.4 106 57 Op 1 . + CDS 103998 - 104702 745 ## EF1724 CBS domain-containing protein 107 57 Op 2 15/0.000 + CDS 104708 - 105184 537 ## COG0597 Lipoprotein signal peptidase 108 57 Op 3 4/0.073 + CDS 105171 - 106076 350 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 106257 - 106298 7.1 109 58 Op 1 7/0.000 + CDS 106418 - 106954 905 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 110 58 Op 2 6/0.049 + CDS 106971 - 108251 1069 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 111 58 Op 3 15/0.000 + CDS 108265 - 109191 1174 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 112 58 Op 4 7/0.000 + CDS 109200 - 110483 1568 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 113 58 Op 5 24/0.000 + CDS 110486 - 111565 1076 ## COG0505 Carbamoylphosphate synthase small subunit 114 58 Op 6 3/0.122 + CDS 111565 - 114747 3836 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 114755 - 114802 4.2 115 59 Op 1 13/0.000 + CDS 114855 - 115646 896 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 116 59 Op 2 5/0.049 + CDS 115643 - 116581 1073 ## COG0167 Dihydroorotate dehydrogenase 117 59 Op 3 9/0.000 + CDS 116571 - 117284 908 ## COG0284 Orotidine-5'-phosphate decarboxylase 118 59 Op 4 . + CDS 117286 - 117918 870 ## COG0461 Orotate phosphoribosyltransferase + Term 117923 - 117975 2.1 + Prom 118009 - 118068 5.2 119 60 Op 1 . + CDS 118116 - 118814 488 ## COG3338 Carbonic anhydrase 120 60 Op 2 . + CDS 118833 - 119762 937 ## COG0583 Transcriptional regulator + Term 119808 - 119861 7.5 - Term 119718 - 119754 -0.3 121 61 Tu 1 . - CDS 119951 - 120997 1033 ## COG1609 Transcriptional regulators - Prom 121026 - 121085 9.2 + Prom 121060 - 121119 9.1 122 62 Op 1 5/0.049 + CDS 121154 - 122443 1547 ## COG3538 Uncharacterized conserved protein 123 62 Op 2 . + CDS 122455 - 125145 2895 ## COG0383 Alpha-mannosidase + Term 125151 - 125198 11.2 + Prom 125170 - 125229 7.3 124 63 Op 1 . + CDS 125307 - 126485 1514 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 126510 - 126569 9.3 125 63 Op 2 . + CDS 126596 - 127486 1143 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 127488 - 127545 14.1 - Term 127484 - 127522 5.4 126 64 Op 1 40/0.000 - CDS 127528 - 129303 1538 ## COG0642 Signal transduction histidine kinase 127 64 Op 2 . - CDS 129300 - 130010 797 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 130136 - 130195 3.1 128 65 Tu 1 . + CDS 130173 - 130637 530 ## COG1683 Uncharacterized conserved protein + Prom 130639 - 130698 4.3 129 66 Op 1 8/0.000 + CDS 130721 - 131059 490 ## COG2739 Uncharacterized protein conserved in bacteria 130 66 Op 2 . + CDS 131064 - 132503 1872 ## COG0541 Signal recognition particle GTPase + Term 132699 - 132735 4.2 131 67 Tu 1 . - CDS 132519 - 133271 827 ## COG0789 Predicted transcriptional regulators - Prom 133325 - 133384 10.8 - Term 133326 - 133378 13.5 132 68 Tu 1 . - CDS 133392 - 133946 720 ## COG0431 Predicted flavoprotein - Prom 134043 - 134102 10.5 + Prom 133931 - 133990 8.2 133 69 Tu 1 . + CDS 134088 - 134891 648 ## EF1695 acetyltransferase + Prom 134940 - 134999 4.0 134 70 Op 1 19/0.000 + CDS 135020 - 135313 493 ## PROTEIN SUPPORTED gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 135 70 Op 2 . + CDS 135325 - 135570 349 ## COG1837 Predicted RNA-binding protein (contains KH domain) + Term 135581 - 135613 2.4 + Prom 135608 - 135667 6.6 136 71 Tu 1 . + CDS 135691 - 136257 628 ## EF1692 hypothetical protein + Term 136266 - 136306 4.2 + Prom 136386 - 136445 8.6 137 72 Op 1 4/0.073 + CDS 136472 - 137413 993 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 138 72 Op 2 . + CDS 137414 - 138202 1001 ## COG0300 Short-chain dehydrogenases of various substrate specificities 139 72 Op 3 3/0.122 + CDS 138219 - 138686 667 ## COG5416 Uncharacterized integral membrane protein + Term 138725 - 138772 7.4 + Prom 138706 - 138765 3.1 140 73 Op 1 7/0.000 + CDS 138841 - 141153 2191 ## COG0608 Single-stranded DNA-specific exonuclease 141 73 Op 2 . + CDS 141156 - 141668 796 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 141675 - 141732 15.6 - Term 141674 - 141710 8.2 142 74 Tu 1 . - CDS 141774 - 141971 242 ## EF1686 hypothetical protein - Prom 142009 - 142068 7.3 - Term 142112 - 142150 9.5 143 75 Tu 1 . - CDS 142165 - 142818 791 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 142896 - 142955 4.8 + Prom 142822 - 142881 7.7 144 76 Tu 1 . + CDS 142950 - 143792 1096 ## COG1307 Uncharacterized protein conserved in bacteria + Term 143842 - 143884 1.1 145 77 Op 1 3/0.122 + CDS 143896 - 144795 971 ## COG2755 Lysophospholipase L1 and related esterases 146 77 Op 2 1/0.317 + CDS 144797 - 145441 614 ## COG4698 Uncharacterized protein conserved in bacteria 147 77 Op 3 2/0.195 + CDS 145458 - 145973 696 ## COG0225 Peptide methionine sulfoxide reductase 148 77 Op 4 1/0.317 + CDS 145979 - 146197 270 ## COG4479 Uncharacterized protein conserved in bacteria + Term 146203 - 146241 5.4 + Prom 146199 - 146258 4.5 149 78 Op 1 . + CDS 146294 - 147727 1807 ## COG0793 Periplasmic protease 150 78 Op 2 . + CDS 147746 - 148300 506 ## COG0681 Signal peptidase I + Term 148305 - 148356 11.2 + Prom 148342 - 148401 2.9 151 79 Tu 1 . + CDS 148421 - 148864 510 ## EF1677 putative lipoprotein + Term 148898 - 148947 14.2 + Prom 148920 - 148979 8.6 152 80 Op 1 8/0.000 + CDS 149013 - 149381 544 ## COG1725 Predicted transcriptional regulators 153 80 Op 2 . + CDS 149378 - 150232 853 ## COG1131 ABC-type multidrug transport system, ATPase component 154 80 Op 3 . + CDS 150234 - 150965 560 ## EF1674 hypothetical protein + Term 150971 - 151031 11.2 + Prom 151023 - 151082 3.4 155 81 Op 1 36/0.000 + CDS 151158 - 151838 288 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 156 81 Op 2 . + CDS 151839 - 153122 1370 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 153147 - 153206 8.9 157 82 Tu 1 . + CDS 153240 - 154181 1149 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 154221 - 154265 13.1 - Term 154208 - 154253 14.1 158 83 Op 1 7/0.000 - CDS 154261 - 154863 652 ## COG0400 Predicted esterase 159 83 Op 2 3/0.122 - CDS 154876 - 155838 1180 ## COG0346 Lactoylglutathione lyase and related lyases 160 83 Op 3 5/0.049 - CDS 155849 - 156277 581 ## COG1846 Transcriptional regulators - Prom 156304 - 156363 9.6 - Term 156344 - 156392 13.3 161 84 Tu 1 . - CDS 156406 - 157200 931 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 157346 - 157405 4.3 + Prom 157370 - 157429 9.0 162 85 Op 1 . + CDS 157451 - 158149 534 ## EF1666 hypothetical protein + Prom 158169 - 158228 7.9 163 85 Op 2 . + CDS 158254 - 158976 699 ## EF1665 hypothetical protein + Term 159003 - 159042 10.0 - Term 158991 - 159030 10.0 164 86 Tu 1 . - CDS 159036 - 160070 870 ## COG1434 Uncharacterized conserved protein - Prom 160255 - 160314 8.1 + Prom 160267 - 160326 8.7 165 87 Op 1 3/0.122 + CDS 160353 - 161174 842 ## COG0280 Phosphotransacetylase 166 87 Op 2 2/0.195 + CDS 161193 - 162275 1227 ## COG3426 Butyrate kinase 167 87 Op 3 5/0.049 + CDS 162281 - 163690 818 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 168 87 Op 4 28/0.000 + CDS 163707 - 164693 1203 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 169 87 Op 5 24/0.000 + CDS 164715 - 165701 1434 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 170 87 Op 6 . + CDS 165725 - 167023 1540 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 167054 - 167102 7.3 + Prom 167028 - 167087 3.7 171 88 Tu 1 . + CDS 167167 - 168219 1157 ## COG3641 Predicted membrane protein, putative toxin regulator 172 89 Tu 1 . - CDS 168228 - 169118 811 ## COG0583 Transcriptional regulator - Prom 169162 - 169221 10.2 + Prom 169142 - 169201 7.3 173 90 Tu 1 . + CDS 169295 - 170236 964 ## COG1893 Ketopantoate reductase + Term 170316 - 170363 7.2 + Prom 170249 - 170308 4.4 174 91 Op 1 8/0.000 + CDS 170513 - 171364 946 ## COG1161 Predicted GTPases 175 91 Op 2 2/0.195 + CDS 171366 - 172133 1233 ## COG0164 Ribonuclease HII 176 91 Op 3 . + CDS 172193 - 173056 777 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 173068 - 173127 2.1 177 91 Op 4 . + CDS 173147 - 173800 576 ## COG1266 Predicted metal-dependent membrane protease + Prom 173863 - 173922 4.3 178 92 Tu 1 . + CDS 173985 - 176063 2229 ## COG0550 Topoisomerase IA + Term 176072 - 176109 5.1 + Prom 176092 - 176151 4.8 179 93 Tu 1 . + CDS 176171 - 177478 1721 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation + Term 177500 - 177551 4.1 + Prom 177534 - 177593 6.6 180 94 Op 1 4/0.073 + CDS 177690 - 178589 874 ## COG4974 Site-specific recombinase XerD 181 94 Op 2 24/0.000 + CDS 178618 - 179166 814 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 182 94 Op 3 4/0.073 + CDS 179181 - 180584 1344 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 183 94 Op 4 . + CDS 180605 - 181387 943 ## COG4465 Pleiotropic transcriptional repressor 184 94 Op 5 . + CDS 181421 - 182296 1080 ## COG2017 Galactose mutarotase and related enzymes + Term 182298 - 182348 16.3 - Term 182286 - 182336 16.3 185 95 Tu 1 . - CDS 182338 - 182967 765 ## COG0344 Predicted membrane protein - Prom 183111 - 183170 7.5 + Prom 183440 - 183499 3.7 186 96 Op 1 33/0.000 + CDS 183520 - 184479 1198 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 187 96 Op 2 35/0.000 + CDS 184472 - 185479 1045 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 188 96 Op 3 . + CDS 185476 - 186243 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 189 97 Op 1 . + CDS 186373 - 186828 585 ## COG4917 Ethanolamine utilization protein 190 97 Op 2 . + CDS 186825 - 187406 813 ## COG2096 Uncharacterized conserved protein + Term 187568 - 187606 -0.7 + Prom 187717 - 187776 9.7 191 98 Tu 1 . + CDS 187884 - 189014 1106 ## COG1454 Alcohol dehydrogenase, class IV + Term 189093 - 189151 12.2 + Prom 189095 - 189154 6.7 192 99 Op 1 . + CDS 189174 - 189521 373 ## COG4810 Ethanolamine utilization protein 193 99 Op 2 3/0.122 + CDS 189549 - 190121 731 ## COG3707 Response regulator with putative antiterminator output domain 194 99 Op 3 2/0.195 + CDS 190122 - 191555 1241 ## COG3920 Signal transduction histidine kinase + Term 191566 - 191625 -0.7 195 99 Op 4 5/0.049 + CDS 191646 - 193070 1588 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition 196 99 Op 5 8/0.000 + CDS 193088 - 194452 1681 ## COG4303 Ethanolamine ammonia-lyase, large subunit 197 99 Op 6 6/0.049 + CDS 194470 - 195381 1266 ## COG4302 Ethanolamine ammonia-lyase, small subunit 198 99 Op 7 4/0.073 + CDS 195395 - 196048 1050 ## COG4816 Ethanolamine utilization protein 199 99 Op 8 2/0.195 + CDS 196062 - 196580 774 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 200 99 Op 9 2/0.195 + CDS 196571 - 198049 1569 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 198087 - 198128 -0.5 + Prom 198092 - 198151 7.2 201 100 Op 1 . + CDS 198173 - 198463 535 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein + Term 198473 - 198521 10.0 202 100 Op 2 . + CDS 198531 - 199094 262 ## EF1622 hypothetical protein 203 100 Op 3 . + CDS 199107 - 199733 780 ## COG4869 Propanediol utilization protein 204 100 Op 4 . + CDS 199748 - 200347 443 ## EF1620 hypothetical protein 205 100 Op 5 . + CDS 200360 - 200623 485 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 206 100 Op 6 2/0.195 + CDS 200636 - 201736 1747 ## COG3192 Ethanolamine utilization protein 207 100 Op 7 . + CDS 201749 - 202192 573 ## COG4766 Ethanolamine utilization protein + Prom 202198 - 202257 8.0 208 100 Op 8 2/0.195 + CDS 202280 - 202708 596 ## COG1832 Predicted CoA-binding protein + Prom 202730 - 202789 7.7 209 101 Op 1 24/0.000 + CDS 202913 - 204970 2605 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 210 101 Op 2 . + CDS 204983 - 207445 2720 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 207467 - 207512 14.6 + Prom 207623 - 207682 9.7 211 102 Op 1 11/0.000 + CDS 207735 - 209981 2570 ## COG1882 Pyruvate-formate lyase + Term 210008 - 210042 2.0 212 102 Op 2 2/0.195 + CDS 210058 - 210822 695 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 210827 - 210890 12.2 + Prom 210833 - 210892 7.5 213 103 Op 1 . + CDS 210918 - 211844 1324 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 214 103 Op 2 . + CDS 211916 - 212800 789 ## EF1610 hypothetical protein + Term 212843 - 212893 11.5 215 104 Tu 1 . - CDS 212859 - 213410 587 ## COG4843 Uncharacterized protein conserved in bacteria - Prom 213565 - 213624 7.2 + Prom 213407 - 213466 6.8 216 105 Tu 1 . + CDS 213591 - 215051 1379 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 215061 - 215111 11.7 + Prom 215114 - 215173 9.5 217 106 Op 1 8/0.000 + CDS 215334 - 217214 1809 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 218 106 Op 2 . + CDS 217214 - 218623 1455 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 218628 - 218680 11.5 + Prom 218646 - 218705 4.7 219 107 Tu 1 . + CDS 218733 - 218894 216 ## EF1605 hypothetical protein + Term 218932 - 218961 1.4 - Term 218920 - 218949 1.4 220 108 Op 1 5/0.049 - CDS 218954 - 219934 1070 ## COG1609 Transcriptional regulators 221 108 Op 2 . - CDS 219953 - 221425 1118 ## COG1621 Beta-fructosidases (levanase/invertase) - Prom 221545 - 221604 10.5 + Prom 221539 - 221598 8.0 222 109 Op 1 9/0.000 + CDS 221656 - 223329 1508 ## COG0366 Glycosidases 223 109 Op 2 . + CDS 223346 - 225274 1913 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 225281 - 225327 11.3 - Term 225385 - 225428 10.1 224 110 Tu 1 . - CDS 225439 - 225501 123 ## - Prom 225524 - 225583 7.5 + Prom 225496 - 225555 5.1 225 111 Tu 1 . + CDS 225583 - 226428 686 ## EF1599 transcriptional regulator Cro/CI family protein + Term 226442 - 226485 10.3 + Prom 226476 - 226535 4.1 226 112 Tu 1 . + CDS 226561 - 227994 1141 ## COG0415 Deoxyribodipyrimidine photolyase + Term 227999 - 228057 4.0 - Term 228137 - 228192 7.4 227 113 Tu 1 . - CDS 228207 - 229643 1381 ## COG0753 Catalase - Prom 229668 - 229727 10.0 - Term 229862 - 229900 5.4 228 114 Tu 1 . - CDS 229946 - 230956 1154 ## EF1596 putative lipoprotein - Prom 230993 - 231052 8.2 - Term 230995 - 231036 5.2 229 115 Op 1 1/0.317 - CDS 231096 - 231530 494 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 231558 - 231617 3.1 - Term 231567 - 231609 1.4 230 115 Op 2 35/0.000 - CDS 231619 - 233397 232 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 231 115 Op 3 . - CDS 233390 - 235138 225 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 235232 - 235291 7.1 + Prom 235032 - 235091 8.5 232 116 Tu 1 . + CDS 235275 - 236093 836 ## COG2207 AraC-type DNA-binding domain-containing proteins 233 117 Tu 1 . - CDS 236148 - 236675 539 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 236718 - 236777 6.1 234 118 Tu 1 . + CDS 237033 - 237641 681 ## COG1051 ADP-ribose pyrophosphatase + Term 237648 - 237685 7.3 - Term 237636 - 237673 7.3 235 119 Tu 1 . - CDS 237692 - 239032 1791 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 239148 - 239207 8.5 - Term 239228 - 239270 9.2 236 120 Op 1 . - CDS 239330 - 239773 598 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 239799 - 239858 6.0 - Term 239851 - 239895 1.1 237 120 Op 2 . - CDS 239912 - 240844 1052 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 240906 - 240965 10.2 - Term 241004 - 241047 10.3 238 121 Tu 1 . - CDS 241073 - 241933 1056 ## COG1705 Muramidase (flagellum-specific) - Prom 242125 - 242184 6.2 + Prom 242111 - 242170 7.4 239 122 Tu 1 . + CDS 242385 - 243380 833 ## COG0477 Permeases of the major facilitator superfamily + Term 243382 - 243437 2.9 - Term 243370 - 243424 9.0 240 123 Op 1 4/0.073 - CDS 243432 - 245426 2713 ## COG0021 Transketolase 241 123 Op 2 . - CDS 245498 - 245740 405 ## COG4224 Uncharacterized protein conserved in bacteria - Prom 245763 - 245822 6.0 + Prom 245808 - 245867 6.2 242 124 Tu 1 . + CDS 245891 - 246511 716 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 246520 - 246557 2.4 - Term 246362 - 246397 -1.0 243 125 Op 1 . - CDS 246525 - 247694 1272 ## COG1600 Uncharacterized Fe-S protein 244 125 Op 2 16/0.000 - CDS 247718 - 248212 609 ## COG0262 Dihydrofolate reductase 245 125 Op 3 1/0.317 - CDS 248230 - 249177 1117 ## COG0207 Thymidylate synthase 246 125 Op 4 . - CDS 249195 - 251084 2267 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 251130 - 251189 8.9 + Prom 250903 - 250962 2.2 247 126 Tu 1 . + CDS 251048 - 251143 76 ## + Term 251149 - 251200 1.2 - Term 251136 - 251188 9.0 248 127 Op 1 . - CDS 251195 - 253249 2437 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 249 127 Op 2 . - CDS 253285 - 253551 327 ## EF1573 hypothetical protein - Prom 253579 - 253638 9.4 250 128 Op 1 . - CDS 253695 - 254171 454 ## EF1572 hypothetical protein 251 128 Op 2 . - CDS 254183 - 254377 249 ## EF1571 hypothetical protein - Prom 254453 - 254512 8.3 - Term 254515 - 254570 13.1 252 129 Op 1 . - CDS 254571 - 255419 1006 ## COG1307 Uncharacterized protein conserved in bacteria 253 129 Op 2 1/0.317 - CDS 255495 - 256667 1105 ## COG1316 Transcriptional regulator - Prom 256701 - 256760 5.7 - Term 256745 - 256798 11.4 254 130 Op 1 2/0.195 - CDS 256811 - 257659 915 ## COG0077 Prephenate dehydratase 255 130 Op 2 5/0.049 - CDS 257667 - 258173 554 ## COG0703 Shikimate kinase 256 130 Op 3 6/0.049 - CDS 258193 - 259473 1485 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 257 130 Op 4 1/0.317 - CDS 259486 - 260580 1045 ## COG0287 Prephenate dehydrogenase 258 130 Op 5 7/0.000 - CDS 260614 - 261780 1455 ## COG0082 Chorismate synthase 259 130 Op 6 3/0.122 - CDS 261782 - 262858 1350 ## COG0337 3-dehydroquinate synthetase 260 130 Op 7 . - CDS 262881 - 263906 1269 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 261 130 Op 8 . - CDS 263943 - 264809 800 ## COG0169 Shikimate 5-dehydrogenase - Prom 264845 - 264904 2.5 - Term 265244 - 265289 11.3 262 131 Op 1 . - CDS 265298 - 265753 625 ## EF1560 hypothetical protein - Prom 265781 - 265840 3.9 263 131 Op 2 . - CDS 265843 - 266217 496 ## COG5496 Predicted thioesterase 264 131 Op 3 1/0.317 - CDS 266217 - 267491 1208 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 265 131 Op 4 3/0.122 - CDS 267434 - 268213 875 ## COG0289 Dihydrodipicolinate reductase 266 131 Op 5 . - CDS 268206 - 268556 463 ## COG1694 Predicted pyrophosphatase - Prom 268645 - 268704 8.6 + Prom 268601 - 268660 2.1 267 132 Tu 1 . + CDS 268680 - 269564 1024 ## COG1284 Uncharacterized conserved protein + Term 269566 - 269612 12.3 - Term 269554 - 269600 12.3 268 133 Op 1 4/0.073 - CDS 269602 - 270141 617 ## COG5582 Uncharacterized conserved protein 269 133 Op 2 . - CDS 270151 - 271407 1687 ## COG0457 FOG: TPR repeat 270 133 Op 3 . - CDS 271417 - 272457 843 ## EF1552 hypothetical protein - Prom 272665 - 272724 6.5 - Term 272715 - 272750 7.1 271 134 Tu 1 . - CDS 272763 - 273038 179 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 273191 - 273250 6.6 - Term 273110 - 273151 -0.1 272 135 Tu 1 . - CDS 273286 - 274596 1895 ## COG1160 Predicted GTPases - Prom 274623 - 274682 4.3 - Term 274693 - 274747 16.2 273 136 Op 1 21/0.000 - CDS 274770 - 275981 2025 ## PROTEIN SUPPORTED gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 - Prom 276030 - 276089 7.8 274 136 Op 2 . - CDS 276095 - 276775 781 ## COG0283 Cytidylate kinase - Prom 276819 - 276878 4.6 - Term 276882 - 276935 11.3 275 137 Op 1 . - CDS 277012 - 277632 719 ## EF1546 LysM domain-containing protein 276 137 Op 2 4/0.073 - CDS 277708 - 279144 1194 ## COG0514 Superfamily II DNA helicase 277 137 Op 3 . - CDS 279151 - 280185 787 ## COG4955 Uncharacterized protein conserved in bacteria - Prom 280378 - 280437 5.4 + Prom 280118 - 280177 6.7 278 138 Tu 1 . + CDS 280221 - 280439 200 ## COG1141 Ferredoxin + Term 280543 - 280582 -0.1 - Term 280411 - 280461 17.3 279 139 Op 1 . - CDS 280462 - 281868 1364 ## COG4640 Predicted membrane protein - Prom 281894 - 281953 6.3 - Term 281988 - 282044 11.3 280 139 Op 2 . - CDS 282049 - 282714 635 ## COG3601 Predicted membrane protein - Term 283003 - 283046 7.1 281 140 Op 1 12/0.000 - CDS 283059 - 283775 1077 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 282 140 Op 2 21/0.000 - CDS 283779 - 284384 786 ## COG1386 Predicted transcriptional regulator containing the HTH domain 283 140 Op 3 . - CDS 284381 - 285166 932 ## COG1354 Uncharacterized conserved protein 284 140 Op 4 . - CDS 285240 - 286130 931 ## COG4974 Site-specific recombinase XerD - Prom 286158 - 286217 7.2 - Term 286211 - 286268 16.6 285 141 Op 1 . - CDS 286300 - 287229 1195 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 287256 - 287315 8.9 - Term 287345 - 287396 12.2 286 141 Op 2 . - CDS 287424 - 288515 1360 ## COG3589 Uncharacterized conserved protein - Prom 288535 - 288594 7.2 + Prom 288497 - 288556 7.1 287 142 Tu 1 . + CDS 288696 - 289445 779 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 289446 - 289502 15.2 - Term 289433 - 289488 17.1 288 143 Op 1 . - CDS 289489 - 289863 555 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 289900 - 289959 4.7 289 143 Op 2 . - CDS 290006 - 290545 630 ## EF1531 TetR family transcriptional regulator - Prom 290621 - 290680 10.2 - Term 290701 - 290755 17.0 290 144 Op 1 . - CDS 290770 - 292068 1705 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 291 144 Op 2 . - CDS 292095 - 292397 303 ## EF1528 hypothetical protein - Prom 292433 - 292492 11.3 - Term 292488 - 292532 7.1 292 145 Tu 1 . - CDS 292536 - 293852 2046 ## COG0536 Predicted GTPase - Prom 293917 - 293976 4.5 + Prom 294012 - 294071 5.7 293 146 Tu 1 . + CDS 294140 - 295150 1168 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 295161 - 295215 14.3 - Term 295155 - 295195 8.2 294 147 Tu 1 . - CDS 295201 - 295650 542 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 295705 - 295764 8.2 295 148 Tu 1 . - CDS 295766 - 296647 525 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Term 296659 - 296707 11.0 296 149 Tu 1 . - CDS 296721 - 298784 2439 ## EF1523 hypothetical protein - Prom 298816 - 298875 4.5 - Term 298880 - 298923 11.5 297 150 Op 1 31/0.000 - CDS 298936 - 300042 1524 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 300071 - 300130 2.9 - Term 300098 - 300146 4.1 298 150 Op 2 . - CDS 300151 - 302037 1921 ## COG0358 DNA primase (bacterial type) - Prom 302139 - 302198 4.0 - Term 302189 - 302251 14.2 299 151 Tu 1 . - CDS 302354 - 304690 2398 ## COG0474 Cation transport ATPase - Prom 304729 - 304788 6.4 - Term 304749 - 304816 14.2 300 152 Tu 1 . - CDS 304819 - 305403 726 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 305500 - 305559 6.2 - Term 305632 - 305679 5.2 301 153 Tu 1 1/0.317 - CDS 305727 - 306416 522 ## COG0036 Pentose-5-phosphate-3-epimerase 302 154 Op 1 7/0.000 - CDS 306554 - 307654 1290 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 307696 - 307755 5.0 - Term 307696 - 307744 0.1 303 154 Op 2 8/0.000 - CDS 307764 - 308213 451 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 304 154 Op 3 . - CDS 308233 - 308550 547 ## COG1445 Phosphotransferase system fructose-specific component IIB 305 154 Op 4 . - CDS 308550 - 309002 550 ## CAR_c23180 hypothetical protein 306 154 Op 5 7/0.000 - CDS 308992 - 310473 916 ## COG3711 Transcriptional antiterminator - Prom 310571 - 310630 5.6 - Term 310664 - 310710 10.2 307 155 Op 1 7/0.000 - CDS 310714 - 312711 2579 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 308 155 Op 2 . - CDS 312748 - 313581 878 ## COG3711 Transcriptional antiterminator - Prom 313754 - 313813 10.5 Predicted protein(s) >gi|308151747|gb|GL476275.1| GENE 1 266 - 355 161 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDFTTEILKTLANKGDLNELLVALIIYK >gi|308151747|gb|GL476275.1| GENE 2 562 - 822 88 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519043|ref|ZP_03949092.1| ## NR: gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] hypothetical protein EfaeD_14121 [Enterococcus faecium DO] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9496_01508 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02042 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01303 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00595 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9507_00266 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_01910 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_02271 [Enterococcus faecalis TX0309A] # 1 86 1 86 86 84 100.0 3e-15 MKKIDLINMIGMLIGILVNIVIFTDWLGVLFSNLIPILIIGICGIILSILELFESRNTMN RIFACIILIVNLLPMVYFTFLYFALG >gi|308151747|gb|GL476275.1| GENE 3 1096 - 2388 983 430 aa, chain + ## HITS:1 COG:RSc0252 KEGG:ns NR:ns ## COG: RSc0252 COG3328 # Protein_GI_number: 17544971 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 24 399 31 405 416 279 38.0 8e-75 MARKKRNPDAEKLAESILNAYQPESVDDMQDALKDVFGPLFEKMLQGELNNHLGYDAHSK EPKEHDNRRNGYGTKTLKTSFGEVAIDVPRDREASFEPELIPKRKRDVSDIEGKVLSMYA RGMSQRDIAATVEAIYGFDISHEMISDITDAVLPELEEWQARPLAKCYAFLFVDCMYVTL RENYEAKEYAVYTILGYDLKGNKEILGLWLNQTESKNRWIQVFDELKARGVEDVFFISMD GVSGLEEGAKAIFPSVIVQRCIVHLVRNALRYIPSKDYKEVCRDMKKFYGASSLNAAHAA FGSFQNRWSHYSGAVDVWKRNFAHVEQLFDYGSAIRKIMYTTNAVESVHSSFRKVTKKGA FSNENALLKLLYLRTKELHAKWSGGRIQNWAMVLKQLMINETFSSRMKSMRFTFRNNGRF IQLCVRSKFI >gi|308151747|gb|GL476275.1| GENE 4 2643 - 2867 145 74 aa, chain - ## HITS:1 COG:no KEGG:EF1853 NR:ns ## KEGG: EF1853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 130 98.0 1e-29 MEDFWYHNKSVSAPISLSQCGYESYHPNSSIRNYIVQQKWIFHYVLSGKGFLEVEAQHFE LIEHDIFFFFKLKK >gi|308151747|gb|GL476275.1| GENE 5 3005 - 4267 793 420 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 9 392 8 388 454 300 42.0 3e-81 MSEKIMNTIQNKVLPIATKIGNQRFLVALRDSFMGTMPVIMTGSVAILLNAFLVDFPMQF GYEKITDYFQWLVDINNLISKGSISIVSLLFIYCLGVNIAKIYKTDTLSSGLVALSSFII SISNSMTSTYNLSNNNNIDLTTLFTDVEGITVTGNSLNVTISGLLPGTQINSNGYFTAII IGFLSSIIFCKLMNKNWTIKLPDTVPPAIAKPFLSIIPALVSLYIIAILTFLLNRITGKI LTDVIYEILQRPMLGLSQSFFVVILVAFLVQFFWFFGIHGGNVMAPIMEGVFGVALLVNL EAYQNNETIPYVWTSVSYGSFVWYATLGLLIAIFWVSKNSHYKEVAKLGIMPVLFNIGEP VMYGLPTVLNPILFIPFLLCPAVMSSVAYLVTDFKLGFSSNTKCNLGNTTGLIWILFDRI >gi|308151747|gb|GL476275.1| GENE 6 4439 - 6274 1614 611 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 593 1 590 595 634 52.0 0 MQTFEIKEEFLVDGKPTKLISGAIHYFRMTPAQWEDSLYNLKALGANTIETYIPWNLHEP VEGVYDFEGMKDIVAFVSLAQELGLMVILRPSVYICAEWEFGGLPAWLLKEHVRLRSTDP RFIAKVRTYFSVLLPKLVPLQVTHGGPVIMMQVENEYGSYGMEKEYLRQTKQVMEEFGID VPLFTSDGAWEEVLDVGTLIEEDVFVTGNFGSHSKENATVMKAFMAKHDKKWPIMCMEYW DGWFNRWGEPIIKRDGQDLANEVKDMLALGSLNLYMFHGGTNFGFYNGCSARGVLDLPQV TSYDYDALLTEAGEPTEKYFHVQRAIKEVCPEVWQAEPRRKTFGSLGTFPVQNSVSLLAV KDQMMTAQETMYPITMEEAESGYGYMLYSVNLKNYHHENKLKVVEASDRLHLFADGSLQT IQYQENLGEEVMIKGTPEKEWIELDVLVENLGRVNYGFKLNGPTQVKGIRGGIMQDIHFH QGYRQYALTLSADQLKKIDYTAGKNPAQPSFYQAEFTLTDLADTFIDCRSYGKGVVIVNG INLGRYWQRGPIHSLYCPKEFLKKGTNEIVIFETEGIEINELIFCGQPIVKKLLTNDFSE IGSNIHNHIDS >gi|308151747|gb|GL476275.1| GENE 7 7258 - 8436 612 392 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 27 390 30 381 390 108 28.0 2e-23 MENMSRFKKHITATGKITWYFQAFRTTRRGFNSKREAQLAYLEMEKQHRNKQKRLASNDK FSVVSQKWFEYYRSLNEQKVATYDKREEQVKILNRWIGGKKLSSLSSEELQKFLFILKEK GIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNS LEDKFLTVDELRAFLNYGIVYEELPMCVLFHVLFYTGCCVSEALALQPQDIDFERNEILF YKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYL FVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEYCSWDVLKDR LGHTDSTTSKIYRHLTSTEKLKPLTAFNSLEG >gi|308151747|gb|GL476275.1| GENE 8 9134 - 9238 136 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEELEWNNFYVCYSFEGSDSFNNCQDSRLLCEYS >gi|308151747|gb|GL476275.1| GENE 9 9162 - 9329 102 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545567|ref|ZP_04434292.1| ## NR: gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01517 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02053 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01291 [Enterococcus faecalis TX2141] # 1 55 1 55 55 84 100.0 3e-15 MFAIVLRVVILLITVKIVDYFANTPEVQIQRKLPEFEKVSPYDPRDNSFLIQIIL >gi|308151747|gb|GL476275.1| GENE 10 9495 - 9578 101 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEATLPMVQARRKELSILMNNSYSNFM >gi|308151747|gb|GL476275.1| GENE 11 9594 - 9902 212 102 aa, chain + ## HITS:1 COG:no KEGG:EF1844 NR:ns ## KEGG: EF1844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 102 1 102 138 143 81.0 3e-33 MKKIGYFSCIIFFMFLVGCSNNKKENGNLLNASSFPLILTTIIEKEEDLTKGSIFFNKDK TMTLEKEYLVNPNNEDTKKQVEQKKRYIKILKYKKIKRAMKL >gi|308151747|gb|GL476275.1| GENE 12 10183 - 10884 691 233 aa, chain - ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 1 232 55 292 293 145 37.0 8e-35 MTISSKKYAYSADKIRKYITGEEPYKGEKLVFLTFDDGVNNQITPQILDALKKYNVHATF FLVGNTLTSENQKIVKREVAEGHSIGFHSSTHDYATLYPNGIVNTEEIQAEIATMENSLK KILGETFQTTLWRYPGGHMSWGGTEKSDELFKQLGIHWIDWNAMVGDAEPLDRQPTTVAE MLAFHQHSLEVYPDYNIRVVLMHDSVDKELTKQALPQLIEFYQANGYQFGVLY >gi|308151747|gb|GL476275.1| GENE 13 11312 - 11833 377 173 aa, chain + ## HITS:1 COG:L132126 KEGG:ns NR:ns ## COG: L132126 COG1713 # Protein_GI_number: 15673861 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Lactococcus lactis # 5 145 10 150 197 130 45.0 8e-31 MDHQQVLKNEIKQYLVSKNCEKTYYHCMEVGEYAYQLGEKYLTSPEKVSIAGYLHDISAI YPNNQRISVAQKYGIELNEAEMAFPMIIHQKISKSIAKMDFGIEDNEILSAIECHTTLKK NYSDIDLVLFVADKIKWDQEGKPPYLFYIAYGFVYQLHGANDFKCFFSTDLSK >gi|308151747|gb|GL476275.1| GENE 14 11763 - 12833 768 356 aa, chain + ## HITS:1 COG:SP0527 KEGG:ns NR:ns ## COG: SP0527 COG2972 # Protein_GI_number: 15900441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 95 332 187 430 446 91 28.0 3e-18 MVSFINYTEQTILSVFFQQIYQNKLLWIASNVILLLINIWIALKIPNSVFLRLNRVLENS RIFFGCLLLLLILLLLFVFLISPEISPDFMRGFVTVNSSKLELLISVGLFLILIGLVIEA YLEEQRINTQLLNNLTIYTEKIESINEELAMFRHDYKNLLYSLQIAISYEDILEIKRIYE ETIAPTKKIIDNEEFELMKLNRLKNMELKALISMKINTAKQAKLKVIVDVPEVFILDTSI DLVVVIRLLAILLDNAIENSAKSELKMFAISIFNKNETQEFVITNSVQAEFDFRVMKKTK FSSKSNPEEHGWGLLYVKEIVDFSDQFDLQTSFNEGSVTQHLIIEKNHNSKKVVNE >gi|308151747|gb|GL476275.1| GENE 15 13068 - 14600 1738 510 aa, chain + ## HITS:1 COG:BS_nprE KEGG:ns NR:ns ## COG: BS_nprE COG3227 # Protein_GI_number: 16078534 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 57 491 75 521 521 178 31.0 3e-44 MMKGNKILYILGTGIFVGSSCLFSSLFVAAEEQVYSESEVSTVLSKLEKEAISEAAAEQY TVVDRKEDAWGMKHLKLEKQTEGVTVDSDNVIIHLDKNGAVTSVTGNPVDQVVKIQSVDA IGEEGVKKIIASDNLENKDLVFLAIDKRVNNEGQLFYKVRVTSSPTGDPVSLVYKVNATD GTIMEKQDLTEHVGSEVTLKNSFQVTFNVPVEKSNTGIALHGTDNTGVYHAVVDGKNNYS IIQAPSLATLNQNAVDAYTHGKFVKTYYEDHFQRHSIDDRGMPILSVVDEQHPDAYDNAF WDGKAMRYGETSTPTGKTYASSLDVVGHEMTHGVTEHTAGLEYLGQSGALNESYSDLMGY IISGASNPEIGADTQSVDRKTGIRNLQTPSKHGQPETMAQYDDRARYKGTPYYDQGGVHY NSGIINRIGYTIIQNLGIEKAQTIFYSSLVNYLTPKAQFSDARDAMLAAAKVQYGDEAAS VVSAAFNSAGIGAKEDIQVNQPSESVLVNE >gi|308151747|gb|GL476275.1| GENE 16 14649 - 15503 708 284 aa, chain + ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 43 272 64 280 342 79 27.0 8e-15 MKKFSIRKISAGFLFLILVTLIAGFSLSANAEEYIVPAESHSRQKRSLLDPEDRRQEVAD TTEAPFASIGRIISPASKPGYISLGTGFVVGTNTIVTNNHVAESFKNAKVLNPNAKDDAW FYPGRDGSATPFGKFKVIDVAFSPNADIAVVTVGKQNDRPDGPELGEILTPFVLKKFESS DTHVTISGYPGEKNHTQWSHENDLFTSNFTDLENPLLFYDIDTTGGQSGSPIYNAQFEVV GVHSNGGIKQTGNHGQRLNEVNYNFIVNRVNEEENKRLSAVPAA >gi|308151747|gb|GL476275.1| GENE 17 15651 - 16481 664 276 aa, chain - ## HITS:1 COG:PH1607 KEGG:ns NR:ns ## COG: PH1607 COG1235 # Protein_GI_number: 14591382 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Pyrococcus horikoshii # 1 272 1 245 249 63 26.0 4e-10 MKINYLGTGAAERIPGIFCNCKLCKYAREKKGREIRTQTQLIIDDVLLIDFPGDSYLHLL QYDLCFADFDSLLISHWHSDHFYGEDLAYRMSGYALDIPNRLTVYGNEAVKTFYQRAFDL EGRQDDTRLQYQVIQPYKCFTIANYTIYPLPAQHGNFSEDCFIFVIDDGKDAFLSTHDTG YFTSEMFEYLEKSHLLLSIVSLDCTSQTNETGNSHMNWEENLKLIAELKERKLVTDKTIY VANHFSHNGGLSYAEMAALSQKHEIITSYDGLEILT >gi|308151747|gb|GL476275.1| GENE 18 16873 - 17727 708 284 aa, chain + ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 227 1 238 290 71 26.0 2e-12 MTIEKLEYFYTIAKYNSISKAASELHVSKSTLSASLKDLESELGHLLFDRNGNSLTLNSY GDKIVQSVYIILNEAKKMKLNLHEMIENPVMRLGFGNTSLMYKVTENEDQLNRFWECYHG SSFELLNKLENHELDFVITSADVNSPVLKKEQLIELKMYLCVSREIKQEIEEEGFTCLTN YPFLFLPHHLDHLEATKSVLEMLQLTSPLVCCYDTLMLTRLIEKSKGVYAVISLRKEQLQ EIDSKLFFLPIERKQKFYLYRNVSSSVFVQPGQIKATLQKLLET >gi|308151747|gb|GL476275.1| GENE 19 18109 - 19497 1101 462 aa, chain + ## HITS:1 COG:mll2542 KEGG:ns NR:ns ## COG: mll2542 COG0477 # Protein_GI_number: 13472297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 14 421 14 421 505 211 32.0 3e-54 MIDRKKVILYTCCMSLFVVTMDVTVVNVALPSIQSDFHTNLSTLQWVTDGYTLMVASLLL LSGSTADRIGRKRVLQLGLACFGLASFLCGISQTPGQLIAFRMLQGIGGSMLNPVAMSII TQVFTEKLERAKAIGLWGSVTGISLGMGPIIGGLIVSYFSWRYVFFVNVPIIAAAIILTQ KFVPESKVEKTAKNDFVGQALMILFLFSSIYSIIGLPRKGLFAPDILSTGIIGCLAIVIF FIYEYNIDNPLINPRFFLSIPFTSASFLAIFGFIIYNGYLFLNTLYLQEMRGFSPLEAGL STIPLAFVSFLVAPRAGEMVGRIGTKRPIMLCGISMLAVSFLQLFVTKTTPMIILFIIYI FLGIGFGMLNSPITITAIEGMPLSQSGTAAAIAVTCKQIGNSLGVALPSLLITKPITSSL TRTPFTNVWLLFGCCAIAIIFLSYLSNSPLAKKSLRRVRFYF >gi|308151747|gb|GL476275.1| GENE 20 19539 - 21599 1866 686 aa, chain + ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 4 647 12 643 653 548 45.0 1e-155 MKKINNRLGLFLFFVLLFWAKTILAYYLDFSLGVKGSLQREILWFNPVATTLLLFGFSLY FKKHKTFMLSLTLLNVLNTLILYLNIIFYREFTDFITIQSVFGFSKVSEGISGDLLALMR VHDVFYWLDTLVLLVLVFYSFKQRRNHQVFVTKPINRRLAISISCLSVLLFSVNLFLSET DRPQLLQRIFDRNYIVKYLGLDAFTAIDGVKTAMSNEVRAEASSNELPEIMKFTKQNNLP LNPQYAGIAKGKNVFVIHLESFQQFLINMKVQGQEVTPFLNQLYQNKATISFDNFFHEVG QGKTSDAENMLETGTFGLPQGSLFTQLGSDNTFEAAPAVLGQKGYTTAVFHGNVGSFWNR DHVYKNLGYQYFFDRSYFSKDDKMLGYGILDKQLLRESASELEHLQQPFYAKFLTVTNHT PYYTDDQNFPFPKLNTGNSIVDDYVRTAHYLDQSLEQFFHYLQTTSLYNHSIFVIYGDHF GISDANNKDLCKAFNRDPKTWTNYDNAQLQRVPLMFYMPGYTQGKIMHEYGGEIDVLPTL YHLLGVDDKNYIHFGTDLLSPQYKQVVPFRNGDFVTPRFSYLGGEIYNNQGKKLDQVPAD LKAEVTKDNDWVKKSLSLSDKLNQENLLRFYKPQGFQEVQPKDYNYDVAFEKNKVLEVEK QKNAQSTSLFSQNGNQTTVQNYPTTP >gi|308151747|gb|GL476275.1| GENE 21 21526 - 21795 131 89 aa, chain + ## HITS:1 COG:no KEGG:EF1812 NR:ns ## KEGG: EF1812 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 89 1 79 79 124 93.0 2e-27 MHNQPACLVKMAIKRQSKIIRLRHRSFKKDNFWKGKRIIYEVKEVRTESFIFEAIGSVST IYQVLSLEQKSKVIFVPGFFALLLSKKSV >gi|308151747|gb|GL476275.1| GENE 22 22100 - 22945 747 281 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 272 1 271 286 216 41.0 5e-56 MRKNQKIVPIVTASDENYAPYLNVMMTTVLENCHSERSVHFYVIDDGLSLSSKKALQETV SSNSQNATVEFLTADKEVYQNFLVSDHITTTAYLRISLPSLLQKYSYKKVLYLDADTLVL DDIVQLYDTPLVNQTIGAVIDPGQAYALKRLGIHSSDYYFNSGVMIIDIDRWNEKAITQK TIQYLEENGDRIVYHDQDALNAVLYEDWLALEPRWNMQTSLVFNRHEAPNEAYQKLYTAG NQEPAIIHFTGHDKPWNTLENHPYSALYLNKLKKVGARNGK >gi|308151747|gb|GL476275.1| GENE 23 22935 - 23837 831 300 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 291 1 275 286 235 41.0 1e-61 MENRKELAIVSCCNTNFVPHLAAMFVSILENSPSAAAVHFYVIDDNINFESKQLLYFTIK HTQINAELTFLKINPHFFKNVVTSERIPKTAYYRIAIPELFRGSQIERLLYMDCDMIALD DVAKLWTVDLGENIIAAVEDAGFHQRLEKMAIPAESMCYFNSGLLLIDVKKWLNLDVTTK VLRFIEENPDKLRFHDQDALNAVLHDRWTLLHPKWNAQGYILSKAKKHPTIYGEKQYEET RRAPSIIHFTGHVKPWTKEFQWYTKRYYDQYANRTAFRCVNTFNQYLSYTKISRRIEYAQ >gi|308151747|gb|GL476275.1| GENE 24 23770 - 23901 102 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315036698|gb|EFT48630.1| ## NR: gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 [Enterococcus faecalis TX0027] # 1 43 48 90 90 70 90.0 5e-11 MSTHSINIYLIRKLAEGLNMLNNEYFHGFRKISYLLVVAKTKQ >gi|308151747|gb|GL476275.1| GENE 25 24223 - 24954 759 243 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 242 3 239 240 229 52.0 4e-60 MENAFKNKALYHQLVDLLQERIETCMIPHDKLPSERELTAQYGVSRTTVRLALQELENRG SIYRRHGKGTFVSDIKKEAADLAGAYSFTEQMKGLGRKPHTRILSFEKLEADKFICQHLN LSLGEAVFKLSRLRIADNEPLMVEDTYLPVKFFLSLTDQLLRSKPLYDLFSEDFKQTVRL ADEELYASIASKEDAKLLMIPEGAPVLHLARQTYNMKNEIIEFTLSVARADQFHYQIRHI RNS >gi|308151747|gb|GL476275.1| GENE 26 24966 - 26138 1405 390 aa, chain + ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 444 56.0 1e-124 MFTAEKEELEQLGAEITTREIRQQPELWQETVTLYHENQTALENFLKEVQAKAQGKRTRV IFTGAGTSQYVGDTVVPYLRAHGDTQAFSFESIGTTDIVAKPEDYLIKDEPTLLVSFARS GNSPESLAAVEVANQVVETIHHLAITCAEEGQLAQISQKEENSFLFLMPTRSNDGGFAMT GSFSCMTLGTLLLFDQTAFEQKQDYVTALIKLGEEVLSREEELNEIVNLDFERIVYIGSG SLAGLTREAQLKILELTAGKVATIFDSSMGFRHGPKSFINEKTIMFGFVNNTPYTRDYDL DILEEVHGDEIAAGVFAIAQPGKRNFSGSTIEYSAETALLPDGYLALADIMVAQTVALLT SIKVGNKPDTPSPTGTVNRVVKGVTIYDYK >gi|308151747|gb|GL476275.1| GENE 27 26161 - 27156 1261 331 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 8 325 7 325 326 399 63.0 1e-111 MLTLTAGKKAAMDRLSTQEGIISALAIDQRGALKKMIKALDVEPTDAQIETFKELVSKEL TPYASAILLDPEYGLPAAKARDTEAGLLLAYEKTGYDATTPGRLPDLLADWSVLRLKEEG ADAIKFLLYYDVDEDSEINHQKHVFIERLGSECAEEDLPFYLELVSYDAQIADATSLEYA KVKPHKVNEMMKEFSKPQYKVDVLKVEVPVNMNFVEGFAPAETAYTKEEAANYFLEQSQA TDLPFIFLSAGVSTELFQETLRFAKEAGSTFNGVLCGRATWKNGVKPFVEAGETAACDWL KTEGRENIESLNEVIAATASSWHAKVQVNEG >gi|308151747|gb|GL476275.1| GENE 28 27172 - 28113 917 313 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 311 1 310 310 303 50.0 3e-82 MIVTVTMNPSIDISYLLDHLKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG GFHGAFIANELKKANIPQAFTSIKEETRDSIAILHEGNQTEILEAGPTVSPEEISNFLEN FDQLIKQAEIVTISGSLAKGLPSNFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKPY LIKPNLEELEGLLEQDFSENPLAAVQTALTKPMFAGIEWIVVSLGKDGAIAKHHDQFYRV KIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERTTGHVDVENVK KHLMNIQVVEIAK >gi|308151747|gb|GL476275.1| GENE 29 28176 - 29960 1752 594 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 590 1 591 595 842 67.0 0 MDRFEIKEEFLLNGQPFKILSGAIHYFRVDPSDWHHSLYNLKALGFNTVETYVPWNLHEP QKGTFHFEGILDLERFLKLAQELGLYAIVRPSPYICAEWEFGGFPAWLLNEPGRMRSNNP TYLKHVAEYYDVLMEKIVPHQLANGGNILMIQIENEYGSFGEEKAYLRAIRDLMIARGVT APFFTSDGPWRATLRAGSMIEDDILVTGNFGSKAKENFGMMQAFFEEHGKKWPLMCMEFW DGWFNRWKEPIIKRDPQELAESVREALALGSINLYMFHGGTNFGFMNGCSARGTIDLPQI TSYDYDAPLDEQGNPTEKYFALQKMLHEEYPALPQAEPLVKDSFAQTAIPLTNKVSLFAT LETISQPVVSVYPQTMEQLGQNTGYLLYRTSIEKDAAEEKLRVIDGRDRLQLFVNQVHQA TQYQTEIGEDIYVTLPQENNQIDVLIENMGRVNYGHKLFADTQKKGIRTGVMADLHFMTQ WQQYCLPMTSCEQVDYSREWQPDQPSFYQYHMELAEVKDTFIDVSKFGKGIVFVNQTNLG RFWNVGPTLSLYIPKGLLKEGQNEIVIFETEGTYRPEIQLVKEPLYKEMKEGLQ >gi|308151747|gb|GL476275.1| GENE 30 29957 - 30436 601 159 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 224 75.0 7e-59 MSIIGVRIDGRLIHGQVANLWATKLNISRIMVVDDEVAGNAIEKSGLKLATPAGVKLSVL PVEKAAQNILAGKYDSQRLLIVVRKPDRLLKLVELGVPIKEINVGNMSQTNETRSITKSI NVVDQDIDVFKELNAKGVHLIAQMVPSDKAEDFMSLITK >gi|308151747|gb|GL476275.1| GENE 31 30450 - 31349 1385 299 aa, chain + ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 298 2 300 301 288 52.0 9e-78 MNILWWQILLLTLYAGYQILDELQIYSSLSAPVFAGLFAGLVMGDIKAGLIIGGSMQLTV LGVGTFGGASKIDANSGTILATAFSVSLGMNPEQAIAAIAVPVASLMIQLDILARFANTY FAHRIDKMVEDMNYKGIERNFLMGALPWSLSRMIPVFLALAFGGGLVQKVVSVLNGDLKW LGDGLSVAGAVLPAVGFAILLRYLPVKKHFPYLILGFTVTALLGTIFTNMQLLGTSVASV VKDFSGVFNALPMLAVALIGFALAAISYKNGQMIPSGPAAKKEHAANDSDEGEIEDDEI >gi|308151747|gb|GL476275.1| GENE 32 31336 - 32145 934 269 aa, chain + ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 265 271 351 64.0 1e-96 MTKSNYKLTKEDFKQINRRSLFTFQLGWNYERMQGSGYLYTILPQLRKIYGDDTPELKEV MKTHTQFFNTSNFFNTIITGIDLAIEEKEGIAGKQTVSGLKTGLMGPFAAIGDSIFAALI PTIFGALAANMAINGNPTGIFIWIVAQIAVMVFRWKQLEFAYREGISLVTTMQHRLTALT DAATLLGVFMVGALVATMVNVKLSWAPSIGDVTLNMQNNLDMILPRLLPAGIVGGVYWML GKKNMTSTKAIFIVLIVCVALSALGVISK >gi|308151747|gb|GL476275.1| GENE 33 32165 - 32572 485 135 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 134 134 167 62.0 4e-42 MSEHLVLVSHGRFCEELKKSAEMIIGPQETISTVTLLPEEGEADFLEKFEAITESLEDFV VFADLLGGTPCNILSKKIMQGASFDLYTGMNLPMVISYVNASLLAIEGDYVKESAESIVK VNELLLNVAVDDEDE >gi|308151747|gb|GL476275.1| GENE 34 32722 - 36696 4006 1324 aa, chain + ## HITS:1 COG:no KEGG:EF1800 NR:ns ## KEGG: EF1800 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1324 1 1324 1324 2488 99.0 0 MKHGKIKRFSTLTLLASATILVPLSTSAEETTNSSTETSSSMVEPTATEEKLWQSDFPGG KIGEWQDVIGKTNRELAGESLAISRDAAAGNNAVSLNLDSPKLADGEVETKFKYTAGSGR TGVIIRGNTKDSWVFVGYNANGKWLVESPNSWNDSISGPTLNEDTNYLLKVRYVGEKITI WLNTTLIYEGEPVLANGDKIPTEAGHVGVRLWYDKKIVNYDYFKNGPVDSIPEIVPEVTQ IAPVKVFTKIGVAPKLPKQVKVTYNTGKEANEAVSWNEIDPDAYKEPGTFEVDGTLENTN IKAKASIVVAKDNEAEKGDKISSADLTAVVDPQFPRIIRYEDPQSNQVIFNGQHEKIDQV MIDGKAYKATAEKQKSEANQAVYNVAVPEIGLHFTTTLTVSEGQELAMKLSDIREEGTKI HTISIPNQGLISVNSTDEGATFAGVVMNTGTNANNGNKNGDTIQDLTTTSQEETKKYMYG FLNTANYAASFWTNAYGDGSVDGSDNNRIHKQTKETATGFVTTLSSGAWTYRPFDAPEDY TTGETPEVKVKFSKDSNDDNRVDWQDAAIGFRSIMNNPMGAEKVPELVNQRIPFNFASQA TNPFLVTLDESKRIYNLTDGLGQMNLLKGYQNEGHDSAHPDYGAIGQRPGGEQALNQLID EGHKLNAVFGVHINDTESYPEAKGFNEELVDPTKRGWDWLDPSYFIKQRPDALSGRRYER FKELKQKAPNLDYIYVDVWGNQGESGWASRQLSKEINSLGWFTTNEFPNALEYDSVWNHW SAEKDYGGTTTKGFNSTIVRFIRNHQKDTWIISDNPLLGGAEFEAYEGWVGKTNFNTYRQ KTFAINVPTKFLQHYQITNWETTTAADGQIYGTIKLANGAEKVTVTQADANSPRSITLNE TEVLKGDAYLLPWNVNGQDKLYHWNPKGGTSTWSLDKKMQGKTNLHLYELTDQGRIDKGA IATTNNQVTIQAEANTPYVIAEPDSIEPMTFGTGTPFKDPGFNEANTLKNNWKVFRGDGE VKKDANGDYVFSSEKERTEIKQDINLPKPGKYSLYLNTETHDRKATVTVKIGGKKYTRTV NNSVAQNYIQADINHTSRKNPQYMQNIRIDFEIPDNAKKGSVTLAVDKGNSVTKFDDLRI VERQTDIMNPDKQTVIKQDFEDTQAVGLYPFVKGSAGGVEDPRIHLSERNEPYTQYGWNG NLVSDVLEGNWSLKAHKQGAGLMLQTIPQNIKFEPNKKYTVQFDYQTDGENVFTAGTING ELKNNNDFKPVGELTSTAADGQTKHYEAEIIGDASGNTTFGIFTTGADKDFIMDNFMVTV ESKK >gi|308151747|gb|GL476275.1| GENE 35 37234 - 38388 944 384 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 78 365 69 350 378 96 27.0 6e-20 MKKYNVDWNYWVVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSG SQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLP TFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERFLNQWTQALFSLGTLTKNVSS FFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQ FLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQ AITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAI IKIIVSEWLNESKENDKIVDSIES >gi|308151747|gb|GL476275.1| GENE 36 38509 - 39153 528 214 aa, chain + ## HITS:1 COG:no KEGG:EF1797 NR:ns ## KEGG: EF1797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 214 214 397 99.0 1e-109 MQLLKKYGGYFLVLGVLLDFFTPYYVGFKDQGYNQLTEVISLLGDVNSPVRENFNRLTII AGMLMLASLPRIYAIFSRKTKKGAWLVVAMIGAYGLFDCIFSGLFSVDTSTAGTVAAALH NGGSAVGYTGFLLLSGVLTIIYSKYGSQKNKNLFGFLFILCMLAAGLYGLARIPQLQQVK PFNYLGLWQRVSSFCNYLPMLALCLQTKTNDKFD >gi|308151747|gb|GL476275.1| GENE 37 39200 - 39769 712 189 aa, chain - ## HITS:1 COG:no KEGG:EF1796 NR:ns ## KEGG: EF1796 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 189 15 203 203 281 99.0 1e-74 MKMSKVLTTVLTATAALVLLSACSSDKKTDSSSSSKETANSSTEVVSGASISAKPEELEM ALSDKGNWIVAATDNVTFDNEVTVAGTFHDKGKDSNDVYRKLALYSQDDNKKVTAEYEIT VPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFDKQEYKDSADLEKDGATV TGEVTVANN >gi|308151747|gb|GL476275.1| GENE 38 39990 - 40442 709 150 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 150 95 40.0 2e-20 MPWNMNDYPTSMKNLAPLIRKKAIDIGNALLADGYPDDRAIPIAISQAEKWYQEASAADK KAFEQEANPTKQDSHKQDKHAGKLLTAAVNVKYKDDQWLVISDSAEKASNTFTHKQEAIE RAQEIARNKQTKLKIYKQDGTLQETKEYTE >gi|308151747|gb|GL476275.1| GENE 39 40633 - 41652 1223 339 aa, chain + ## HITS:1 COG:lin0977 KEGG:ns NR:ns ## COG: lin0977 COG0115 # Protein_GI_number: 16800046 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Listeria innocua # 5 338 4 337 339 538 74.0 1e-153 MEKANLDWNNLGFSYIKTPFRYISYWRDGKWEEGTLTDNNQLTISEGSPALHYGQQCFEG LKAYQCADGSVNLFRPDENAKRLQKSCARLLMPQVPVETFVSACQEVVKANLAYLPPYGT GGTLYLRPYMIGVGDNIGVAPAKEYIFSIFCVPVGSYFKNGLAPTNFIVSEYDRAAGRGT GAAKVGGNYAASLLPGAEAHEKEFSDCIYLDPYTHTKIEEVGAANFFGITKEGTFITPKS ASILPSITKYSLLTLAKERLGMTALEGDVYIDRLADFSEAGACGTAAIISPIGGIQNGTD FHVFYSETEVGPVTKQLYDELVGIQFGDKEAPEGWIVKA >gi|308151747|gb|GL476275.1| GENE 40 41787 - 42107 453 106 aa, chain + ## HITS:1 COG:no KEGG:EF1792 NR:ns ## KEGG: EF1792 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 27 106 1 80 80 147 97.0 1e-34 MLIKSAESEEMTIFFDKENQPNAQVQMGIITLQPGEKRPLAGYARHEQDEYSYVISGEAH TILEDGQDLVGKAGQAQLIEAGEGHINYNDGLEQAVVVWMLVERTK >gi|308151747|gb|GL476275.1| GENE 41 42170 - 43810 1675 546 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 545 1 549 549 476 46.0 1e-134 MKKYLKIIMVCILLVGFLAGCTNKNENKKKQKNTKEAVQLMSPSELTTLNTSVLLDFPDA IVQTAAFEGLYSLDEQDQLVPAVAKALPMISEDGKTYTISLRKEAVWSNDDPVTAHDFEY AWKKMIDPKNGFVYSFLIVETIQNGAEISAGKLAPNELGVTAVDDYTLKVTLKEPKPYFT SLLAFPTFFPQNQKVVEQFGADYGTASDKVVYNGPFVVKDWQQTKMDWQLAKNNRYWDHQ NVRSDIINYTVIKETSTALNLFEDGQLDVATLSGELAQQNKNNTLYHSYPTATMNYLRLN QKRKGQTTPLANENLRKALALGIDKENLVNNIIADGSKALHGAITEGFVANPTTGLDFRQ EAGNLMVYNKEKAQSYWKKAQAELGEKVNVELMVTDDGSYKKIGESLQGSLQELFPGLTI ELTALPTEAALNFGRESDYDLFLIYWTPDYQDPISTLMTLYKGNDRNYQNPVYDKLLDEA ATTYALEPEKRWATLIAAEKEVIETTAGMIPLSQNEQTVLQNDKVKGLNFHTFGAPLTLK NVYKEK >gi|308151747|gb|GL476275.1| GENE 42 43908 - 44783 330 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 13 248 239 475 500 131 34 3e-29 MRYLSKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVIT DVKNHGPLHARCPEAMVVGFEETVLLTDVVEQAEVILIGPGLGLDATAQQILKMVLAQHQ KQQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLVNNQRQQAKL GSTIVLKSHRTTIFHAGEPFQNTGGNPGMATGGTGDTLAGIIAGFLAQFKPTIETIAGAV YLHSLIGDDLAKTDYVVLPTKISQALPTYMKKYAQPHTAPDSELLEQKRSR >gi|308151747|gb|GL476275.1| GENE 43 44932 - 45798 1085 288 aa, chain + ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 19 286 46 323 325 232 42.0 6e-61 MEEKKTFYMSGYVGIASLLVILIAGIGLFIYGASHTNGVLVVLGIILLVGAILFLSSLTI VSPNQAKAILFFGRYLGTIKENGLFITIPFTQKMNISLKVRNFNSSLLKVNDSDGNPIEI SAVIVFRVVDTAKALFNVDYYQDFVEIQSETAIRHVATQYPYDTFSDNDVTLRGNTEQIS EELTKELQERLAVAGVEVIETRLNHLAYATEIASSMLQRQQAKAILAARQTIVEGAVSMT QMALEQIEEGQEINFTDERKVQLINNLLVSIITDKGTQPVINTGDVSS >gi|308151747|gb|GL476275.1| GENE 44 45972 - 46460 549 162 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 161 1 161 162 218 69.0 4e-57 MKPLVAVIMGSTSDWATMKATCLVLEELGIPYEKRVISAHRTPDLMFRFAEESRTKGLKV IIAGAGGAAHLPGMVAAKTTLPVIGVPVKTRTLNGIDSLLSIVQMPGGVPVATTAIGSAG ATNAGLLAAEILSIDDLQLAERIQARRQSLEKAVMESGEQLE >gi|308151747|gb|GL476275.1| GENE 45 46453 - 47577 901 374 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 371 19 373 374 373 50.0 1e-103 MNKPLKVGATIGIIGGGQLGRMLVMSGKKMGFQMIVLDPTLNSPAGQVADRQIVAAFDQI SALTELAELCDVITYEFENIEVASLEKAIPLEKLPQGTGLLKITQNRLLEKMFLQSIGCK IASFAEVKSQKELPQATEKIGFPCVLKTIQGGYDGKGQVVLKCEEDFSQATELLANATCE LEKWVPFTKELSIIVAGNKHGYQSFPVSENIHRKNILHESIVPARISENVQQKAAELAQH IAEELNLSGVLAIELFLTDSEELYVNELAPRPHNSGHYSIEACSFSQFDAHIRGISNWGI GLPQLLQPVVMVNLLGEHLEKSYQLCTSKPTWQVHYYGKAGSKVGRKMGHVTITTPCLSE TLKEIETVGIWNVT >gi|308151747|gb|GL476275.1| GENE 46 47729 - 48442 716 237 aa, chain + ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 262 57.0 4e-70 MEKKALVYTGKAKKLYQTENAAVLFVEYLDQATALNGQKKDKVLGKGALNNQITSLIFEH LQQQKIPNHFIKKVSEHEQLIQAVEMIPLEVVVRNYAAGSFSKRLAIEEGTKLVTPIIEF YYKEDRLDDPFINEDHIQFLKVATPAEIVEIKALALQINQALSQLFQRLNICLIDFKIEI GRTKANQLLLADEISPDTCRLWDLNTNEHLDKDVYRRELGEIVPVYEEVLQRLLTAN >gi|308151747|gb|GL476275.1| GENE 47 48456 - 48707 392 83 aa, chain + ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 77 1 78 84 79 53.0 2e-15 MYFVKVYVTYKESILDPQGEAVKEAVHRLGFTEVAEIRVGKYFEMHVQQTEAIEEKIEQI CDQLLANVNMESYRFEILSLEEI >gi|308151747|gb|GL476275.1| GENE 48 48708 - 49382 629 224 aa, chain + ## HITS:1 COG:L176360 KEGG:ns NR:ns ## COG: L176360 COG0047 # Protein_GI_number: 15673513 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Lactococcus lactis # 1 218 1 220 223 302 66.0 4e-82 MKLAVIVFPGSNCDADLLWAVKEVMGVDAEFVRHDATSLAKFDGVLLPGGFSYGDYLRCG AIARFSPIINEVIRFAAEGKMVFGTCNGFQILTEIGLLPGTLLRNDSLRFICKSVPLKVN THTKFTSEYPENVSIHLPVAHGEGNYYCDEKTLKELKEKNQIVFTYQEKVNGSLANIAGI CNEQGNVLGMMPHPERAMEELLGSTDGRSFFASIIKNFGKELSQ >gi|308151747|gb|GL476275.1| GENE 49 49379 - 51598 2195 739 aa, chain + ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 736 1 739 739 1024 68.0 0 MMNEPTPKEIKETRLYAEWGLTDEEYHQIETILQREPNYTETGLFSVMWSEHCSYKNSKP VLKKFPTEGPQVLQGPGEGAGIVDIGDGLAVVFKAESHNHPSAVEPYEGAATGVGGIIRD IFSMGARPIALLDSLRFGELTDARTRYLFQEVVAGISGYGNCIGIPTVGGEIAFEPCYQG NPLVNAMCVGLIRHDEIQKGQAKGVGNSILYVGAKTGRDGIHGATFASEEFSEGEEQQRS AVQVGDPFMEKLLLEACLDLIKNHQDILIGIQDMGAAGLVSSSAEMASKAGSGLILELDK VPQRETQMSPYEMLLSESQERMLICVEKGAEQQACELFQTYNLEAVAIGSVTDDGQYRVF HGGKIVADVPVDALAEEAPVYQKAYQEPERMRAFKKLAPFIPEITNSTELLKRLLQQPTI ASKKSVYETYDSQVQTNTVVQPGSDAAVLRVRGTNKALAMTTDCNSRYLYLNPEIGGQIA VAEAARNIVASGAQPLAITDCLNYGSPDKPESFWELWTSADGIAAACRQLGTPVISGNVS LYNETDGQAIYPTPMIGMVGVIEDVSQITTQAFKQVDDLIYLIGETHPDFNGSEIQKMQL GRIEGLLRSFDLKEEKANQELVLKAIQAGLVASAHDCAEGGVAVALAESAFANELGLQVT LPLTKEYLFAETQSRFILSVSPQHQEAFETLIGRKAQHIGKVTETGLVIHALDDVINCST KEAKALWEDAIPCLMKQKA >gi|308151747|gb|GL476275.1| GENE 50 51574 - 53013 1312 479 aa, chain + ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 476 1 476 484 704 70.0 0 MSYEAKSLNEECGIFGIWGHPDAAQVTYFGLHSLQHRGQEGAGIVANNSGKLDGHRDLGL LAEVFQKQEQLNALEGTAAIGHVRYATAGTGSVDNIQPFLFKFYDSQIGLAHNGNLTNAK RLRKQLEREGAIFHSNSDTEILMHLIRKSTAVSFLDKLKESLNLVKGGFAYLLLTETMMI AALDPNGFRPLSIGQMNNGAYVVASETCALETVGARFIQDVAPGEVVIISDEGLKIEVFT TEVQPAICAMEYIYFARPDSNIAGVNVHTARKRMGKNLAIESPVAADMVIGVPNSSLSAA SGYAEEAQIPYELGLVKNQYVARTFIQPTQELREQGVRMKLSAVRGVVKGKKVVLVDDSI VRGTTIRRIIHLLKEAEAQEVHVRIASPPLKYPCFYGIDIQTRDELIAANYSIEEIKEQI GADSLAFLSEAGLIDGIQLNYDAPYSGLCMAYFNGDYPTPLYDYEEQYQASLKKETRRN >gi|308151747|gb|GL476275.1| GENE 51 53015 - 54046 761 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 320 10 320 354 297 48 3e-79 MENAYSKAGVNVEAGYEVVERIQKHSQKTQRTGTLGMLGGFGGCFDLSSYKLKEPVLVSG TDGVGTKLLLAIEEQRHETIGIDCVAMCVNDVVAQGAEPLYFLDYLALGTVNPAKVEAIV AGVAAGCCEANAALIGGETAEMPDMYEADAYDVAGFAVGIAEKSQLLTPSNVKEGDFLIG LPSSGLHSNGYSLVRNIFFKKHSFKTTDKLPELAPKTLGEELLTPTKIYVKELLPLLKAG LVHGAAHITGGGFLENLPRMFSSALAAEIQLNSWPVLPIFKLIQKYGEIPPEEMYEIFNM GLGMILAVSPEHVEKVQELLPEAFEIGRLVPRKTKAVIFKEAL >gi|308151747|gb|GL476275.1| GENE 52 54043 - 54615 266 190 aa, chain + ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 2 185 3 186 195 211 50.0 5e-55 MKIAVFASGNGSNFEAIAAAFSQKKIAGQLSLVFCDQPEAYVLTRAQKRKIPVVCFSPSD FSSREQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTLDTLTEKIHALEHEWYPKI ISQIVKETMK >gi|308151747|gb|GL476275.1| GENE 53 54612 - 56153 1588 513 aa, chain + ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 1 513 1 515 515 649 64.0 0 MTKRALISVSDKTGVTTFAAGLVANGFEIISTGGTRTVLEEAGVPTLAIDDITGFPEMLD GRVKTLHPNIHGGLLAKRGNQTHQKALTEQGIQFIDLVVVNLYPFKETILKPAISEAEAI EMIDIGGPSMLRSAAKNYQDVTAVVDPSDYEQVLSEISSTGTSQLATRKRLAAKVFRHTA AYDALIADYLTTQVGETEPEKQTLTYERKQTLRYGENSHQQATFYQSVVPVSLSIASARQ LHGKELSYNNIRDADAALRIASEFTEPTVVAVKHMNPCGIGTGKTILAAYRQAFEADPVS IFGGIVVLNRPVDQATAAEMHQIFLEIIIAPSFEEEALALLSQKKNLRLLTLDFHAQEKK AVELVSVMGGLLIQEQDTVVENDQAWQVVTERQPTPAERDALNFAWKAVKHVKSNAIVLA NESQTVGIGAGQMNRIGSVKIAVDQAQAAGKLQGAVLASDAFFPMADSVEYAAQHGIQAI IQPGGSIKDQASIDLANHYGIAMIFTGTRHFKH >gi|308151747|gb|GL476275.1| GENE 54 56172 - 57419 1294 415 aa, chain + ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 417 428 435 56.0 1e-122 MNILVIGRGGREHAIAKKLQQEDKVKTVYCAPGNPGMSGDNIRTVPISEEQQTELIQFAK DNQIDWTFVGPETPLIEGIVDAFQAAGLLIFGPTKAAAIIEGSKSFAKDFMQKYQIPTAE YRVFRRLAPALEYIEKQGVPIVIKADGLAAGKGVVVAETKAAAKRALVAMMEDQQFGASG QTVVIEEFLQGEEFSLMAFVSNEKVYPMVIAQDHKRIFDGDAGPNTGGMGAYTPVPQIPE EAVQQAISQVLKPTAKGMVAEKRPFQGILYAGLIQTETGPKVIEFNARFGDPETQVVLAR LESPLSEIISSLLAKEQPTIAWNELASVGVVVAAEGYPNQYKTNLPLPEMSGETIHYAGV TRSEQALVSAGGRIFLAEATASTLEEARKKVYQTLDNYSFPGMYYRKDIGVKGLI >gi|308151747|gb|GL476275.1| GENE 55 57547 - 57876 314 109 aa, chain + ## HITS:1 COG:no KEGG:EF1776 NR:ns ## KEGG: EF1776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 109 181 93.0 8e-45 MRNKQIEKVSQRLFIVTSVLAVSLLLLSALVYPDLPAHVPIHVNFWGKGNSFGPRSSIFM WPVVLFGLSIYQRSYQSVQPYGRWLKVFLIIVNLGALFSILRLFIHLLV >gi|308151747|gb|GL476275.1| GENE 56 57897 - 58631 436 244 aa, chain + ## HITS:1 COG:no KEGG:EF1775 NR:ns ## KEGG: EF1775 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 465 97.0 1e-130 MRKLILVFVGCAMAFCLWPNQAAAVAGGYGGGRVESPSGGNPSNGFSPGGDGSRSYVHHN ETGTSNTTPLEGLISTVFFVLFGGVMIWQRRRRNQPVDEGAFQEMWAVLPGTSKEKKALL KEIQQTFLEIQQAWDQENLSVVKDNYTEKLYQKHLAVLQANQQAGIRNHVKKVKVAPASN YHHISETSFSLMLHFSCIDYEEDIQSGLVLSGYKHQKQYFSQLWYFDYNPSLGKWQADFI QPKG >gi|308151747|gb|GL476275.1| GENE 57 58671 - 59192 454 173 aa, chain - ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 21 172 10 162 162 94 39.0 8e-20 MNHSSNPQTSTWSATALAKMALVTALYVVVTVLLAPLSFGPIQLRLAELFNYLGVFNKRY IWSITLGVAIANAASPLGIIDIVIGSAGTCAVLWIAYFATKNQQNLLIKLMLTAILFALS MFTVAGPLTFFYQLPFWYTWLTVGLGELLSMTVGGILIYVLNKKIQLVKRIEE >gi|308151747|gb|GL476275.1| GENE 58 59338 - 60102 246 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 249 4 238 242 99 30 1e-19 MPKEFETKRVLVTGAASGIGQAQAIAFAEQGAEVIGIDLDETGLKQTAALVNPDSTKPFT YFVGDVSSPSFVQATMKQIVKDNGQIDILLNTAGILDDYRPSLETSEALWDQILATNLKS VFLVTNALLPYFLQQKKGVIVNMASIAGLVAGGGGAAYTASKHAIIGYTKQLSYDYAKLG IRANAIAPGAIQTPMNAADFAGEGEMATWVASETPAGRWAQPQEVAKLSLFLASDDADYI HGTVMTIDGGWTMK >gi|308151747|gb|GL476275.1| GENE 59 60186 - 60419 442 77 aa, chain - ## HITS:1 COG:no KEGG:EF1772 NR:ns ## KEGG: EF1772 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 148 100.0 7e-35 MTFEEVLPQIKAGKKAVRKGWSGFELFIELRDEIGTSEGEFLQVTPYFLIKTSDEGYSMF SPTPCDVLAEDWVIVEA >gi|308151747|gb|GL476275.1| GENE 60 60409 - 61071 635 220 aa, chain - ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 210 3 207 209 223 53.0 3e-58 MLESYITVKQDGFSEIEIKKSRFICSVKRVTSEEEAKAFIAAIKKEHWKANHNCSAFVIG EKNDIQRSSDDGEPSGTAGVPMLEVLKKKELINVVAVVTRYFGGIKLGTGGLIRAYSHAL SHTLDEIGLVIGKLQQELLITIAYPLLGKAQAFLEHSPYTLKETIYTESIQLICLVDEQA TETFIAEMTDLLNGQLTIEKGATSYHELPFNEKGAQANDI >gi|308151747|gb|GL476275.1| GENE 61 61213 - 61500 304 95 aa, chain + ## HITS:1 COG:no KEGG:EF1770 NR:ns ## KEGG: EF1770 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 177 100.0 1e-43 MVHTRQKKYDTITHYLKTNGGSQVTLTFTQFDELLFPHSGLPKTAKTDVDWWANDYKHPE KGAYGWLNASYQVVQVNLEKEYVVFNKLLKSAWYV >gi|308151747|gb|GL476275.1| GENE 62 61621 - 61956 470 111 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 115 64.0 1e-26 MSKKTIMLVCSAGMSTSLLVTKMQKAAFNQGLDAHIFAASASEADTNLENNPVDVLLLGP QVRYMKSDFEKRLSPKGIPTDVISMSDYGLMNGEKVLEQALDLLAQADKKE >gi|308151747|gb|GL476275.1| GENE 63 62056 - 63372 815 438 aa, chain + ## HITS:1 COG:lin2657 KEGG:ns NR:ns ## COG: lin2657 COG4098 # Protein_GI_number: 16801718 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Listeria innocua # 58 436 57 438 439 317 43.0 3e-86 MEDLHGRKIIIEETERSIQTKLVYLPTMLERSPLTIQCQRCGEVVSKKENRLATNVYYCH ACIQLGRVTSCQKFCHLPERPNSPRTVFFEWSGQLTKGQQAISVELCETAKARENRLVWA VTGAGKTEMLFAVLHQTLQEGGRIALASPRVDVCLELFPRIQAVFPHEAIALLHGNSQEA YRYTKLVICTTHQLLKFHQAFDLLIVDEVDSFPFVNNEHLYYGVRNARKKRSSLVYLTAT PTKELRKLLQQKKLAASILPARYHRRPLPVPRRFWVQSWQRLSSKNIKIIAHHLKRLLVR NSVLLFCPSISLIHQLHALIAQRFSDKEVVAVYGSDELRLEKVQAMRQQKTDILITTTIL ERGVTFDAVSVIVYGANHRVFTSSTLVQIAGRVDRRQEFNYGEVLFLHDGETRDMKEAIR QIKQMNRLASKRGMLDGL >gi|308151747|gb|GL476275.1| GENE 64 63629 - 64048 281 139 aa, chain + ## HITS:1 COG:lin2656 KEGG:ns NR:ns ## COG: lin2656 COG1040 # Protein_GI_number: 16801717 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Listeria innocua # 1 139 84 218 218 94 38.0 7e-20 MERYKFQGDYRLRTCFNEEINSYFRQQSADYIIPVPLSEKRMQERGFNQVIGLLEAADVP YSPFLIRKEENVPQSKKTRKERMRLQQPFAIQKENQKKLKNCSVILVDDIYTTGRTLFHA AAVINDCYPKSLNTFTLAR >gi|308151747|gb|GL476275.1| GENE 65 64187 - 64738 669 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367] # 1 183 1 183 186 262 69 1e-68 MFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAKVEVTIPL PYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAVFLVGEETE ETPSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIVYRRKDGKYGLI ETD >gi|308151747|gb|GL476275.1| GENE 66 64994 - 67531 3158 845 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 845 1 837 839 1102 68.0 0 MANFLKKMIENDKKELRRLEKIADKIDAHASAMEQLSDEQLREKTDEFKARYQKGETLDE LLPEAFAVVREAAKRVLGLFPYRVQLMGGIVLHDGNIPEMRTGEGKTLTATMPVYLNALS GEGVHVVTVNEYLATRDSNEMGELYNFLGLSVGLNINSKSSDEKREAYNCDITYSTNNEL GFDYLRDNMVVYRSQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYTRADNF VKRLKEDEDYKIDIQSKTIGLTEAGIEKAEQTFGLDNLYDIENTALTHHLDQALRANYIM LLDIDYVVQDNKVLIVDQFTGRIMDGRRYSDGLHQAIEAKEGVEIEDETKTMATITFQNY FRMYKKLAGMTGTAKTEEEEFREIYNIQVIQIPTNRPIIRDDRPDLLYPTLESKFNAVVE DIKERYHKGQPVLVGTVAVETSELLSDKLNAAKIPHEVLNAKNHFKEAEIIMNAGQKGAV TIATNMAGRGTDIKLGLGVLELGGLAVIGTERHESRRIDNQLRGRAGRQGDPGVSQFYLS LEDDLMKRFGSERIKTFLERMNVQEEDAVIQSKMFTRQVESAQKRVEGNNYDTRKNVLQY DDVMREQREVIYAQRQEVIMEENDLSDVLMGMVKRTIGRVVDSHTQLEKEEWNLDGIVDF AASTLVHEDTISKKDLENKSAEEIKDYLVARAQEVFEEKSQQLNGQEQLLEFEKVVILRV VDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYSMYNNMVGSIEYEVTRLFMKSE IRQNVQREQVAQGQAEHPETEQDAAAQSNTSAKRQPVRVDKKVGRNDLCPCGSGKKFKNC HGRNA >gi|308151747|gb|GL476275.1| GENE 67 67608 - 67682 68 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENPEIRTLLDEMTQKITSFRRSL >gi|308151747|gb|GL476275.1| GENE 68 67726 - 68709 1042 327 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 454 71.0 1e-127 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE ERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHG FQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV DVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTN YETGNVQAVMDGDLDGFIDAYLKQRLS >gi|308151747|gb|GL476275.1| GENE 69 68815 - 69501 357 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 215 4 219 223 142 36 2e-32 MIEMKDVMKKYSNGTTAIRNISVEIDQGEFVYVVGPSGAGKSTFIRLMYREEKATKGNLT VAGHDLMKIKNKEVPYLRREIGIVFQDYKLLPKKTVYENVAYAMQVIGRRPREIKKRVME VLDLVGLKHKVRVFPSELSGGEQQRVSIARAIVNTPKVLIADEPTGNLDPENSWEIMKLL DRINAQGTTVVMATHNSTIVNTIRHRVIAIENGRIIRDQVEGEYGYDD >gi|308151747|gb|GL476275.1| GENE 70 69494 - 70378 941 294 aa, chain + ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 1 294 1 311 311 310 50.0 2e-84 MIRTFFSHLFESIKSLKRNGWMTVASASAVTITLVLVGIFMGVIFNATKLADDIEKNVTV SVFVDIGTKQNEMKTLEKQLKGLDNVEDISYSNKDQQLKKIQEQMGDAWNLFEGDSNPLY DVYYVRAKTPEDTKDIAKQAAKFPSVFKADYGGVNSDKIFKIAQTVRTWGLAAAALLLFV AVFLISNTIRITILSRQKEIQIMRLVGAKNSFIRWPFFLEGAWIGLIGAIVPVIIMTLGY HQVYNMFNPQLLRSNYSLIRPEDFIWKVNLLMIATGMIIGSLGSVISMRRFLKI >gi|308151747|gb|GL476275.1| GENE 71 70554 - 71408 1049 284 aa, chain + ## HITS:1 COG:SP1400 KEGG:ns NR:ns ## COG: SP1400 COG0226 # Protein_GI_number: 15901254 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 285 292 322 56.0 6e-88 MKKRLLLFIGLASILTLTGCAKWIDRGESITAVGSSALQPLVETASEEYQSQNPGRFINV QGGGSGTGLSQVQSGAVDIGNSDLFAEEKKGIKAEDLIDHKVAVVGITPIVNKNVGVKDI SMENLKKIFLGEVTNWKELGGKDQKIVILNRAAGSGTRATFEKWVLGDKTAIRAQEQDSS GMVRSIVSDTPGAISYTAFSYVTDEVATLSIDGVQPTDENVMNNKWIIWSYEHMYTRKNP SDLTKEFLDFMLSDDIQERVIGQLGYIPVSKMEIERDWQGNVIK >gi|308151747|gb|GL476275.1| GENE 72 71531 - 72451 1094 306 aa, chain + ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 301 4 303 311 375 73.0 1e-104 MEDVQKKLLTKSKRAKMEQRGKFISFLCIALIVAVVVSIFYFVASKGLATFFKDKINVFD FLFGTNWNPSDIGADGKPMVGALPMIAGSFIVTFLSAIVATPFAIGAAVFMTEISPKKGA KFLQPVIELLVGIPSVVYGFIGLSVIVPFVRSIFGGTGFGILAGTFVLFVMILPTVTTMT VDALKAVPRHYREASLALGATRWQTIYKVVLRAAVPGILTAVVFGMARAFGEALAIQMVI GNAAVMPTNLTTPASTLTSILTMGIGNTIMGTVENNVLWSLALILLLMSLLFNIVIRIIG KRGALK >gi|308151747|gb|GL476275.1| GENE 73 72451 - 73335 955 294 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 407 72.0 1e-113 MNAKKADKIATGILYAVSGVIVLILAALLIYILARGIPHISWEFLTQPSRAYQVGGGIGI QLFNSLYLLLITMIISIPISLGAGIYLSEYAKKNWLTDLIRTSIEILSSLPSVVVGLFGF LIFVVQIGYGFSILSGALALTFFNLPLLTRNVEESLKAIHYTQREAGLALGLSRWETVKK VILPEALPGILTGVILSSGRIFGEAAALIYTAGQSAPALDFSNWNPLSVSSPISIFRQAE TLAVHIWKINTEGTMPDGAAVSAGASAVLILVVLLFNFGARFIGNRLYKRMTSA >gi|308151747|gb|GL476275.1| GENE 74 73352 - 74161 306 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 256 5 231 245 122 34 2e-26 MKEYNLNDTHLLQLDSQKDPIALHTEDLHVFYGDNEAIKGVDLQFEKNKITALIGPSGCG KSTYLRSLNRMNDGIANSRVTGKIMYKDVDVNTKEVDVYEMRKRIGMVFQRPNPFSKSIY ENITFALKQHGEKDKKKLDEIVETSLKQAALWDQVKDNLNKSALALSGGQQQRLCIARAI AMKPDILLLDEPASALDPISTGTVEETLVNLKDDYTIIIVTHNMQQAARISDYTAFFYMG KVIEYDHTRKIFTRPKIQATEDYVSGHFG >gi|308151747|gb|GL476275.1| GENE 75 74154 - 74930 284 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 254 1 263 329 114 27 6e-24 MVRRSKMGKEIISSKDLHLYYGKKEALKGIDLTFNQGELTAMIGPSGCGKSTYLRCLNRM NDLIPDVTITGSVVYKGKDIYGPKTDNVELRKEIGMVFQQPNPFPFSVYENVIYGLRLKG VKDKQVLDEAVETSLKAAAVWEDVKDKLHKSALSLSGGQQQRVCIARVLAVEPDIILLDE PTSALDPVSSGKIENMLLTLKEKYTMIMVTHNMSQASRISDKTAFFLQGDLIEFNDTKKV FLNPKEKQTEDYISGKFG >gi|308151747|gb|GL476275.1| GENE 76 74945 - 75622 786 225 aa, chain + ## HITS:1 COG:SP1395 KEGG:ns NR:ns ## COG: SP1395 COG0704 # Protein_GI_number: 15901249 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 217 217 234 57.0 9e-62 MLRTQFEEELLNLHNQFYEMGMMVSSAVHKSVKAYINHDKKLAQEVIDRDIEINDMEVKL EKKSFEMIALQQPVTTDLRMIITVMKASSDLERMADHAVSIAKSTIRLKGETRIPEIEKE ISDMSDYVKKMVDNVLIAYVKTDQKDARMIAQMDDRTNEYFDSIYKHAVEAMKANPETVI SGTDYLHVAQYLERIGDYVTNICEWIVYLATGKITELNSNRDEQF >gi|308151747|gb|GL476275.1| GENE 77 75832 - 77433 2113 533 aa, chain + ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 213 530 107 414 416 179 32.0 9e-45 MKERERVLELVKKGILTSEEALILLENMATEKDEKQIEKAAEKVDTQNIGTTNKEDQVAD LMDALEKGESEGPTVDPFEENTQDSAEKDRENLERILDELATKANRASAELDEVNAEIAG IKEEIKEVVEEIGTLDTKEELDALTEDEQVQRKDLHVLLAQLEEKLATQSTKKTALEEEL KNIRKEQWKGQWNDTKEKVSSQFSEEWKDQATDTFNQVGGKVAEVGGQVGEFLKKTFNSF SDTMNDNVEWKDIKMKVPGVATTKFEHEFNYPNPQASLIDVKVANGTVVFKTWDQEDVKV EAKIKLYGKMAGDSPMEAFLERSDIDVDDETISFQVPNKRVKADLTFYLPKRTYDHVSVK LLNGNVLVEELTAKDVYTKSTNGTITFKKIDATMLEIEGVNGEIKVLEGTILDNIIETVN GDVSISAAPESLSVSLINGDIRITAKEKTLRRVEASSANGNIKLALPNDLGVEGQVKTNL GSINSRLTDIEVVREKKDRGNQQLHFRRVLEESMAQINASTTTGSIFLKDTDK >gi|308151747|gb|GL476275.1| GENE 78 77508 - 77831 445 107 aa, chain + ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 61 111 169 183 60 45.0 7e-10 MKRKLTKSPNNVVLTGSLAGIADWLGIDPTIIRVVYVLLSFFSAGFPGILLYIALAVLIP SGRTGSDRGYGHQNPYNRNVRNENPYAANKKQRKEAEKIDDDEWSDF >gi|308151747|gb|GL476275.1| GENE 79 77831 - 78187 308 118 aa, chain + ## HITS:1 COG:no KEGG:EF1751 NR:ns ## KEGG: EF1751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 154 100.0 9e-37 MTYFQRLVVNTLTFISLSVVFPGMIHVRGIMPAIIAAFVLSILNMLVKPVLTILSLPFTL LTFGLFSFVVNAAILQMTSFFVGEMNFGFSSFWAAVLMAVIMSIVNTIVTDHNLSKYE >gi|308151747|gb|GL476275.1| GENE 80 78223 - 79185 952 320 aa, chain - ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 5 138 3 139 373 129 48.0 1e-29 MKEYLKEKAHQLPLTPSVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVK QIIDFDVLHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNERQLEIKLLNI PTKENCFGPYSIRRKLNRLKIILDSIYDLVPTNYWHQTFQKESAIPTELFQQELFDFFHN QGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQRISQANQRDWQLMWLPC QKKIKYYLIYQGLVVATRVVTKQTFQKYSPLELAKKIMPKKSPKTIEHYSKQQVDFLNIL YGYISRHPECHLENLTIEKA >gi|308151747|gb|GL476275.1| GENE 81 79395 - 80330 1127 311 aa, chain + ## HITS:1 COG:SPy0584 KEGG:ns NR:ns ## COG: SPy0584 COG1493 # Protein_GI_number: 15674671 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 306 310 369 61.0 1e-102 MTEVVKIYQLVENLSLEVVYGDEESLNRTIKTGEISRPGLELTGYFNYYSHDRLQLFGSK EITFAERMMPEERLLVMRRLCAKDTPAFIVSRGLEIPEELITAAKENGVSVLRSPISTSR LLGELSSYLDGRLAVRTSVHGVLVDVYGLGVLIQGDSGIGKSETALELIKRGHRLIADDR VDVYQQDELTVVGEPPKILQHLIEIRGIGIIDVMNLFGASAVRGFMQVQLVVYLEAWEKD KKYDRLGSDDAMVEIANVDVPQIRIPVKTGRNVAIIIEVAAMNFRAKTMGYDATKTFEER LTRLIEENSGE >gi|308151747|gb|GL476275.1| GENE 82 80345 - 81181 812 278 aa, chain + ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 6 270 8 266 269 250 50.0 3e-66 MMLAQVNSIAFRLFGIPVYWYAIIIVSGIALAVWLSSREAVRVGLKEDDVFDFMLWGLPA AIVGARLYYVAFQWQDYVDNPIEIFFTRNGGLAIYGGLIGGGLALFFFTRHRFISTWTFL DIAAPSVILAQAIGRWGNFMNHEAYGPATTRQFLENLHLPTFIIDNMNINGTYHQPTFLY ESVWNVLGFIVLVLLRKKPHFLKEGEVFLGYIIWYSFGRFFIEGLRMDSLYAFSNIRVSQ LLSLVMFVAAIVIVIVRRRNPNLKFYNREKQKKKITTS >gi|308151747|gb|GL476275.1| GENE 83 81250 - 82272 1388 340 aa, chain + ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 3 336 4 337 341 440 67.0 1e-123 MKQKVAVLGPGSWGTALAQVLAENGHEVCIWGNKPEQIDEINTKHTNKHYLPELILPTSI QATTDLATALVDVDAVLFVVPTKAIRSVAQEVAQHLKTKPIIIHASKGLEQGTHKRISEV IAEEIPAEKRQGIVVLSGPSHAEEVAVHDITTITAASENLADAVYVQELFMNDYFRIYTN DDVIGVETGAALKNIIALGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIG LSGVGDLIVTCTSVHSRNWRAGNLLGKGHKLDEVLENMGMIVEGVSTTKAAYELAQQLEV EMPITETIYNVLYNDEDVQQAAKEIMLRDGKTENEFTLDF >gi|308151747|gb|GL476275.1| GENE 84 82284 - 83180 1226 298 aa, chain + ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 2 293 4 299 299 457 80.0 1e-128 MKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALASGIEDILIVTGKAK RPIEDHFDSNVELENNLKEKNKTDLLKLVEETTDVNLHFIRQSHPKGLGHAVLQAKAFVG NEPFVVMLGDDLMEDKVPLTKQLMDDYEQTHASTIAVMKVPHEDTSKYGIINPEKEIEKG LYNVENFVEKPKPEEAPSDLAIIGRYLLTPEIFDVLENQKPGAGNEIQLTDAIDTLNKTQ RVFAREFKGERYDVGDKFGFMKTSIEYGLTHPEVKDNLREYIINLGAQLAKKEQPKEK >gi|308151747|gb|GL476275.1| GENE 85 83358 - 83789 610 143 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 140 6 133 135 93 48.0 1e-19 MSGGEIAALIAAVAFVVLVIFLVLVLYKVSQVVSKIEDTIDETNTTIKVVTSDVNVLSRQ VEGLLVKSNELLTDVNQKVATIDPLFTAVADLSESVSELNTSSKHLITKVGTVGKSTAKA GLVSKVGGSAFRAMRSKNKKTNN >gi|308151747|gb|GL476275.1| GENE 86 83805 - 84392 1114 195 aa, chain + ## HITS:1 COG:BH3244 KEGG:ns NR:ns ## COG: BH3244 COG4980 # Protein_GI_number: 15615806 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Bacillus halodurans # 7 130 9 136 140 62 37.0 6e-10 MAKKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGT ELTEIAKQKAGVLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFKKQTGDLSDQFKKA ADDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKE DVKDAAKDVKKEFKG >gi|308151747|gb|GL476275.1| GENE 87 84513 - 85616 1459 367 aa, chain - ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 3 367 2 365 365 389 52.0 1e-108 MNQEKIADLKNWMHQEKIDFTYISDPGHIAYFSGYESEPHERVLALFIAADDQSFLFTPA LEVEDAEKSSWTYPVYGYLDSENPWEKIAALLNKRTQGTPRFALEKQALSLARFDQLKTY FPASDFSHDVTPLIEKLQLIKTEPEIQRLLEAGSWADVAFEIGFKAIQAGVAEQEIVAEI EYQLKRQGIRSMSFDTLVLTGKNGASPHGVPGETKIEPHDLVLFDLGVVHNGYCSDATRT VSYLEPSDFQKEIYGIVLEAQLAATEAVKPGVTAGELDDIARGVITKAGYGEYFNHRLGH GIGTTVHEYPSLVHGNDLVIEEGMCFSIEPGIYIPGKVGVRIEDCLHVTKTGSEPFTKTT KELQIIQ >gi|308151747|gb|GL476275.1| GENE 88 85831 - 86832 1324 333 aa, chain + ## HITS:1 COG:SPy0514 KEGG:ns NR:ns ## COG: SPy0514 COG1609 # Protein_GI_number: 15674618 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 333 7 333 333 410 67.0 1e-114 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLAS KKTTTVGVIIPDVSNAFFASLARGIDDVATMYKYNIILANSDGDDQKEVTVLNNLLAKQV DGIIFMGHRITDDIRGEFSRSKTPVVLAGSIDPDEQVGSVNIDYTEATKDATATLAKNGN KKIAFVSGALIDPINGQNRMKGYKEALAENGLSYNEGLVFESEYKFKAGINLAERVRNSG ATAAFVTDDELAIGLLDGMLDAGVKVPEEFEIITSNNSLLTEVSRPRLSSITQPLYDIGA VSMRLLTKLMNKEEIEEKTVVLPYGIDQKGSTK >gi|308151747|gb|GL476275.1| GENE 89 87019 - 87714 197 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 224 4 233 305 80 25 7e-14 SMKVKELTVEYGNRTIIENLSMQAEFGEIIGLVAPNGTGKTTFFKAISGLIPRKNGNISL NKIDYNSRSATYLKELFFLESSKNLYDYLTPKEHLEYIKAAWKSNSDIEHIFEQLKMKEY QNRTIKKLSLGMKQHVLLAMYLASDATILLLDEPFNGLDPTSVSLFIMCLKEIVYKDKIV ILSSHDLYNVEHTCTRILFMKNKKLVENDQRNLSLREQYDNLYLRGEERNA >gi|308151747|gb|GL476275.1| GENE 90 87707 - 88807 547 366 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545648|ref|ZP_04434373.1| ## NR: gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01600 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02138 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01209 [Enterococcus faecalis TX2141] # 1 366 1 366 366 633 100.0 1e-180 MLKIETIKILKEKSLWFVFIAFILMLIYPLLAQPQQLSFKEMQYENRIKNNEQAKGKMKN EPAAKETLNEIEDESEQLRKAINAIKIGDEWALLEAEKKLEESNLNAMLKGTLYSIPIIE QQKRVKELQYLSENRIKQVDSSEVAKMPALNYLGFLLSMDFPYTLLLIIPSLMIIALATL EKRKNTVSLWNGLPLKLWKKYSIKISSILFTVGLVSYLSIFLSVISAFFKNGLGNPDYPV AIIEKGQSVTIISLSNYLSRSLIMFGMLLLALTVFSFLLSLFTGNLIVHSLLIVGVVLSS GVSLISNKFFFTAYMNFPKIINGGNGYEPMDEIGLTFDFSLKMIVVYVLISLIVSAIVLR NRKGLF >gi|308151747|gb|GL476275.1| GENE 91 88993 - 91371 2332 792 aa, chain - ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 27 774 28 768 770 712 50.0 0 MKNNSSNNKQKPTTSSGGNVFLLILNVIIRVFQSLVVFGVILIVLGGSLGLGIGMGYFAF LVEDTQPPTKEELQKEISDITEVSKMTYADGTPIANIKSDLIRTRINGDQMSPLLKKAII STEDEYFEEHHGVVPKALVRALISDATGIGGSSGGSTLTQQLVKQQILTDETTFKRKANE ILLALRIEKYFSKDEIVTTYLNVSPFGRNNKGENIAGVEEAAKGLFGKSAKDLNLPQAAF IAGLPQSPIVYTPYTNTGALKDDLSLGMKRKDFVLFSMYREKAISQKEYEEAKAYDLKKD FLPTEQANVNTEGYLYYTVLDKAVEIVMDLDMKKAKVNRDDLDQVGLDQYEEQARREIQS QGYTIQSTIDQNIYNTMQTAVANYGYLLDDGTADVNGNTMIETGNILMDNATGRILGFIG GRNFDINQNNHAFNADRQVGSTIKPISVYGPAIDQGLIGSESRLANYPTTYADGREFVNS TTVDLNQFVTVRNALNWSFNIPVVHVNNELRKKMGDDNFSYNHYLSKMNYPASDAWAYES APLGPVETNVVTQTNGFQALANKGKYQKAYMIEKITDNSGHVVYEHKDEGTQVYSPATAS IMNDLLRSVVDSANTTKFKPTLAGLNPHLASADWVGKTGTTDEFKDSWLIVSTPTVTLSS WTGHDLPAPMTTTSGDNNGNYMANLANALYYANPELFGIGQKFELDPSVIKSKVSEFTGE KPGSITYNGAKFNTPGKTTTSYYAKDGAPQSTYKFGIGGTDSNYASYWGNLAPRATTNNN NNNKNNDNKKNN >gi|308151747|gb|GL476275.1| GENE 92 91583 - 92845 727 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 7 415 418 284 39 2e-75 MNSAFFEELKARGLVYQVTDEEALQKQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRF QQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPA ILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIETGISYTEFAYQLLQAYDFL KLYETEGCLLQLGGSDQWGNITSGIELLRREQEVQGFGLTMPLITKADGTKFGKTEGNAV WLDAEKTSPYEFYQFWINTDDRDVVKFLKYFTFLTLDEIATIEEEFTANPGQRAAQKALA KEVTTLVHGEAAYHQAVKISEALFSGDIQSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLL VTSKIEPSKRQAREDVQNGAIYVNGERRQDLAAELTETDKIEGQFTVIRRGKKKYFLLKY >gi|308151747|gb|GL476275.1| GENE 93 93026 - 93688 587 220 aa, chain + ## HITS:1 COG:no KEGG:EF1738 NR:ns ## KEGG: EF1738 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 376 99.0 1e-103 MKSIVEKLNLTKYQQLVILNRPQGEYLSEFASAAQQLPSEPVELIFAFVKTMAEFQEIVS MVIEGQHLVENGLLYVAYPKKGNKMYPTFVHRDEIFPTLQVNETDGYIKGSTLKFNRMVS LDETFTVVGMKNVLKKPAKNQTSSAVGDYVQYLPEIEALVQTEPAAAATFAALTPGYQKE WARYVFSAKRAETRKKRQTEMLVILKEGYKTKALYQQRKK >gi|308151747|gb|GL476275.1| GENE 94 93688 - 94155 382 155 aa, chain + ## HITS:1 COG:no KEGG:EF1737 NR:ns ## KEGG: EF1737 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 295 98.0 3e-79 MGQSIETVTAYIETVEPKWRIAYQQVLDAVSQNLPAGFELTMQYGMPTFVVPLSVFPEGY LNRGDEPLPFISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTN PKRIPYELIGELVTKITLEEWLQQYQHYQKKKKNY >gi|308151747|gb|GL476275.1| GENE 95 94166 - 95059 1131 297 aa, chain + ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 294 4 295 297 432 72.0 1e-121 MLLGSHVSMSGKKMLLGSAEEAASYGSTTFMIYTGAPQNTRRKPIEEMNIEAGQAFMKEH NLSNIVVHAPYIINLGNTIKTENFGFAVDFLRQEIERAQALGATQITLHPGAHVGAGPEA GIKQIVKGLNEVLWKEQIPQIALETMAGKGTEIGRTFDELAAIIDGVTLNDKLSVTLDTC HINDAGYNVKDDFDGVLVEFDKIIGLDRLKVIHVNDSKNPMGSHKDRHANIGFGTIGFEA LNGVVHHEKLTALPKILETPYVGEDKKNKKAPYGFEIAMLKNQTFDPELLEKIQGQN >gi|308151747|gb|GL476275.1| GENE 96 95254 - 95472 342 72 aa, chain + ## HITS:1 COG:BS_yneF KEGG:ns NR:ns ## COG: BS_yneF COG3763 # Protein_GI_number: 16078854 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 72 2 72 72 67 64.0 9e-12 MATGWVVLIAVIALLVGAAGGFFLARKYMQDYFKKNPPVNEDMLRMMMASMGQKPSEKKV RQMMQQMKNQGK >gi|308151747|gb|GL476275.1| GENE 97 95670 - 97421 200 583 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 353 558 17 226 245 81 29 3e-14 MSIFKKLGWFFKQEKKSYIIGVFSLMMVALVQLVPPKVIGVVVDEIVNKEIRLTKIIVWV ALLIGAGLAQYLFRYIWRMHIWGSAARLEKELRTQLFHHFTKMDSIFYQKYRTGDLMAHA TNDLNAIQNVAGAGILTFADSVITGGTTIIAMVLFVDWRLTLIALLPLPLLAVTSRVLGS KLHDAFRDSQAAFSAINDKTQESITGIKVIKTFGQEKEDLADFTEKIDDAIVKNKRTNFL DALFDPFITLIIGVSYVLTIIIGGRFIMEGTISLGQLVSFIAYIGMLVWPMFAIGRLFNV LERGNASYDRVNELLHEKTHIIERKDAIKTMAQGTISMKIDSFSYPKEEAVALENIQFSL QEGETLGIVGKTGAGKTTILKLLMREYDQYQGTISFGKHNIKNYTLDALMGAMGYVPQDH FLFSMTVRDNIRFAKPDLEQAAVEQAAALAFINQEIKAFPEGYDTMVGERGVSLSGGQKQ RISIARALIVEPELLILDDALSAVDAKTEEAILSNLKETRQEKTTIITAHRLSSVMHAKE ILVLDEGKIIERGTHPELLAQKGWYQRMWEKQQLEAKIEGSES >gi|308151747|gb|GL476275.1| GENE 98 97421 - 99205 191 594 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 355 579 12 233 318 78 27 4e-13 MEEKYQSEWSRELPMKEQLTIVQRLFRFAKPFRRMFYTAILFAFGLSIINILLPRVIQVF MDNYLTPKTATMQVILTFAAIYFFGVIVKSIVWFFQWYLYSMASLKTYQYIRVKLFEKLH TLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVITGIFAVISSFFAMFQLSPEISFY CLIFLPILLVVIWYYQKFSSKLYRSMREKLSQLNTKLNEYISGMQIIQQFRQEKRLEKEF EETNDDYLKTRVAMIRMNSLLLSPIINLLYTLAIALALTMFGIDALHSPVEAGMIYAFVT YVQAFFNPMTQMMDFLSIFTDGIVAGSRILKIMDTEELTPQQSVGANGEIIRGKIEFRNV TFSYDGKNEVLKNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDRDIR DFPMTELREKMGLVLQDAFMFYGDIAGNIRLLNPTITDEQIKQAAEFVQADKFIHTLPNT YHAKVIERGASYSSGQRQLISFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQG RTTIAIAHRLSTIRDANLILVLDKGQIVERGTHETLLAEGGLYADMYQLQSTEV >gi|308151747|gb|GL476275.1| GENE 99 99322 - 100122 609 266 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 17 259 4 245 252 233 50.0 4e-61 MKREKQTRKLGGTVKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATASQTLDCDLVEW RLDYYENVADFSDVCNLSQQVMERLGQKPLLLTFRTQKEGGEMAFSEENYFALYHELVKK GALDLLDIELFANPLAADTLIHEAKKMGIKIVLCNHDFQKTPSQEEIVARLRQMQMRQAD ICKIAVMPQDATDVLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGS AQQASAPGQLSVQVLRNYLKTFEQNK >gi|308151747|gb|GL476275.1| GENE 100 100140 - 100634 642 164 aa, chain + ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 8 161 3 156 158 161 53.0 5e-40 MAKKKTQQKTNAMRMVEQHKVPYKEYEFAWSEDHLSAESVAESLGIEKGRIFKTLVTVGN KTGPVVAVIPGNQELDLKKLAKASGNKKVEMLHLKDLETTTGYIRGGCSPIGMKKQFPTY LAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAEITTKE >gi|308151747|gb|GL476275.1| GENE 101 100699 - 100782 57 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFLLHVFNYQINKGKALSKQCYFLLE >gi|308151747|gb|GL476275.1| GENE 102 100764 - 101171 402 135 aa, chain - ## HITS:1 COG:BS_ypdQ KEGG:ns NR:ns ## COG: BS_ypdQ COG0328 # Protein_GI_number: 16079258 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus subtilis # 4 128 5 127 132 100 40.0 7e-22 MLRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQAIANE DNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPLLLIKWLPESQNKAAD MLARQALQKFYSNKK >gi|308151747|gb|GL476275.1| GENE 103 101272 - 101733 321 153 aa, chain + ## HITS:1 COG:no KEGG:EF1727 NR:ns ## KEGG: EF1727 # Name: ebsA # Def: EbsA protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 273 99.0 1e-72 MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIAR SFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPL FLEALKIKKPELKVAEDHSLGLHKKEEKNKSES >gi|308151747|gb|GL476275.1| GENE 104 101838 - 102044 222 68 aa, chain - ## HITS:1 COG:lin1992 KEGG:ns NR:ns ## COG: lin1992 COG1278 # Protein_GI_number: 16801058 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 80 66.0 7e-16 MQKGIVKWFDNRKGYGFIVYNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA AHVKKIDN >gi|308151747|gb|GL476275.1| GENE 105 102223 - 103893 2258 556 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 556 556 766 69.0 0 MKTDINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVT SINPTPAGEGKSTVTIGLGDALNQINKKTVIALREPSLGPVMGIKGGATGGGYAQVLPME EINLHFTGDMHAITTANNALAALLDNHLQQGNELKIDSRRVIWKRAVDLNDRALRQVVVG LGGPFQGVPREDGFDITVASEIMAILCLAQNLTDLKERLSRIIVAYNDQREPVTVKDLNV AGALTLLLKDALKPNLVQTIEGTPAFVHGGPFANIAHGCNSILATKTALHLGDYVVTEAG FGGDLGGEKFLDIKVPSLGKAPDAVVIVATIRALKMHGGLAKDQLAEENLPALQKGFTNL EKHIQNMQRYDVPVVVAINEFTQDTEKEIQLLKEACQALGVPVELTSVWAQGGAGGTNLA KTVVAEIEANTKQFQPLYNPRQTIEEKIQAIVQTIYGGEQAIFSPKAQKQIADFTKNGWD QLPICMAKTQYSLSDDPQKLGRPEGFTITIRELVPKIGAGFIVALTGDILTMPGLQKVPA ALNMDVDETGQASGLF >gi|308151747|gb|GL476275.1| GENE 106 103998 - 104702 745 234 aa, chain + ## HITS:1 COG:no KEGG:EF1724 NR:ns ## KEGG: EF1724 # Name: not_defined # Def: CBS domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 432 100.0 1e-120 MGERADTFLAHFNRIEKWMRERLNNPVNMGFSEMTRRLSRKEKGQIAQFEEDLLQMAQLR NAIVHERIADDFVIAEPNEWAVQRIETIEQALTKPEKVVPKFAKRVTAFEITTSLETLLT IIAKKQYSQFPIYEKGVFKGLITVRGIGVWFAIESTKGEVHIANRTVRELLASNYKRSNY QFVSIEATVFEVEQMFREQPRLEAVLISKSGHPNGELVGIVRPRDLASIHREKE >gi|308151747|gb|GL476275.1| GENE 107 104708 - 105184 537 158 aa, chain + ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 7 147 9 149 153 125 50.0 3e-29 MLVVYFLISALLVGLDQWSKYLTVQNISLGETKEFIPGFLSLTHLRNTGAAWSLLEGKMI FFYVITVIVSVVIIYLLIKNYKKSIWYSVGLSFVLAGAIGNFIDRVRLGYVVDMLQTDFM NFPIFNVADSTLVVGVICIFIYLILDEKAAKEGKNGTN >gi|308151747|gb|GL476275.1| GENE 108 105171 - 106076 350 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 37 285 38 279 285 139 35 1e-31 MEQINVTIQTEKGRIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETVRANYKVTAGDEIV VTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHADHL SAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDK GEINAPIGRSKVDRKMQAVIEGGKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKY IGYPLAGDPLYGPKKTLPGNGQFLHAKLLGFTHPTTGEQLVFEAPLPEVFEKTLHQLRNN H >gi|308151747|gb|GL476275.1| GENE 109 106418 - 106954 905 178 aa, chain + ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 6 175 5 177 180 199 63.0 2e-51 MPKKEVVDAVTMKRALTRISYEIIERNKGIQDIVLVGIKTRGIYIAQRLAERLKQLEDID VPVGELDITLYRDDVKDMEEPELHSSDVPVSIEGKEVILVDDVLYTGRTIRAAMDAVMDL GRPRKISLAVLVDRGHRELPIRADYVGKNIPTSKTEEIIVEMEERDGADRIMISKGNE >gi|308151747|gb|GL476275.1| GENE 110 106971 - 108251 1069 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 426 5 427 447 416 49 1e-115 MSEKEFRNEDAVLDIKDRPQAFHWVGLSLQHLFTMFGATVLVPILVGIDPGIALVSSGLG TMVYLITTKGKIPAYLGSSFAFIAAMQMLMKSDGYPAIAQGAMTTGLVYLIVSLIIKKIG SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVYDFKYIAVALITLGLTIFYNMF FKGFLGLIPILLGIVSGYLVALAFGIIDLTPIKEAAWFALPNFEVPFVQYQPKLYLNAIT TMAPIAFVTMTEHIGHLMVLNKLTKRNFFQDPGLSKTLMGDGLAQIVAGFVGGPPVTSYG ENIGVLAITRVHSVFVIGGAAVFAVALGFVGKLSALILSIPGPVISGISFVLFGVIAASG LKILIDNKINFDKKKNLLIASVILVIGIGGLVFKVGTFELSSMALATVLGIVLNLILPEN ARSEEQ >gi|308151747|gb|GL476275.1| GENE 111 108265 - 109191 1174 308 aa, chain + ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 1 307 1 307 311 424 65.0 1e-118 MIITSERISLKHLLTAEALTDREVMGLIRRAGEFKQGAKWHPEERQYFATNLFFENSTRT HKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTMSAIGVDVAVIRHGKENYYDELI QSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGGFEGLKVAIVGDITHSRVAKSNMQL LNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDVMMLLRVQHERHDGKESFSKEG YHLEYGLTNERATRLQKHAIIMHPAPVNRDVELADELVESLQSRIVAQMSNGVFMRMAIL EAILHGKA >gi|308151747|gb|GL476275.1| GENE 112 109200 - 110483 1568 427 aa, chain + ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 424 428 480 59.0 1e-135 MKTLIKNGKIIKKENQLIEAALWLENGVIHAIGESFDEADFEQVFDAKGQLITPGLVDVH VHFREPGFTYKETIKTGSKAAARGGFTTVCAMPNLNPVPDTAEKLSEVYDLIQKDAVVKV LQYAPITEELRSEVLTNQKALKEAGAFAFTNDGVGVQTAGTMYLAMKEAAALNMALVAHT EDESLLFGGVMHEGEVSKKLGLPGILSATEASQIARDITLAKETGVHYHVCHVSTEESVR VIRDAKKAGIHVTAEVSPHHLILVDEDIPGDEGFWKMNPPLRGLADRQALIDGLLDGTID CIATDHAPHGLEEKQQSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAE IFGLNAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL AWSEEAQ >gi|308151747|gb|GL476275.1| GENE 113 110486 - 111565 1076 359 aa, chain + ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 356 3 356 360 563 70.0 1e-160 MKRLLILEDGTVFEGKAFGAEGNVVGEVVFTTGMTGYQEAITDQSFNGQMITFTYPLVGN YGVNRDDYESIAPTCKGVIVKEHARVASNWRQQMTLDEFLKRKGIPGISGIDTRALTRKL RSAGTMKGSIIDAVDDLPHAFDQLKATVMPKNQVAQVSTTKPYPSPGIGRNVVVVDFGLK HSILRELSKRQCNLTVLPYNTTAEEILELSPDGVMLTNGPGDPKDVPEAIEMIQEIQGKV PIFGICLGHQLFSLANGADTYKMKFGHRGLNHPVREIATGRIDFTSQNHGYVVDEATIDP EKLLVTHVEVNDGTVEGVRHRDYPAFTVQYHPDAAPGPHDGLHLFDEFMELMDAWKEQN >gi|308151747|gb|GL476275.1| GENE 114 111565 - 114747 3836 1060 aa, chain + ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1060 1 1058 1058 1681 80.0 0 MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDKEI ADHVYIEPITLEFVSRILRKERPDALLPTLGGQTGLNMAMELSESGILDELNVELLGTKL SAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGG MCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIEYEVMRDSADNAIVVCNMENFDPV GIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMKNPVTGTTYAEFEPALDYVVSKIPRW PFDKFEKGARELGTQMKATGEVMAIGRNIEESLLKAVRSLEIGAYHNELAELSHVSDLEL TKKMVHAQDDRLFYLSEAIRRGYSIEELQSLTKIDLFFLDKLLHIIEIETTLESHVDNVA ILKEAKQNGFSDRKIAALWGQTEQAIADFRRANQIVPVYKMVDTCAAEFESHTPYFYSTY EVENESNVSKKPSVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVST DFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQTAINLAEPLTKQGVKILGTTIED LDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPSYVLGGRAMEIV ENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGIMEHIERAGVHS GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHENRVYVIEVNPRASRT VPFLSKITGIPMAQVATKAILGEKLTDLGYQDGLYPESKQVHVKAPVFSFTKLQKVDTYL GPEMKSTGEVMGSDYYLEKALYKAFEASGLHLPSYGAVLFTIADETKEEALEIAKRFSAI GYSLVATEGTADFLAKHQLPVKKVTKISNPEGETVLDVIRNGNAQVVINTMDKNRSSANQ DGFSIRREAVEHGIPLFTSLDTTNAILKVLESRAFTTEAI >gi|308151747|gb|GL476275.1| GENE 115 114855 - 115646 896 263 aa, chain + ## HITS:1 COG:SP0963 KEGG:ns NR:ns ## COG: SP0963 COG0543 # Protein_GI_number: 15900840 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 8 263 1 250 250 263 48.0 2e-70 MQRKQEMMTIVAQKQLAPRIYQLDLQGELVKEMTRPGQFVHIKVPRADLLLRRPISINQI DHSNETCRLIYRVEGAGTEVFATMKAGEQLDILGPLGNGFDITTVAAGQTAFIVGGGIGI PPLYELSKQLNEKGVKVIHFLGYASKEAAYYQQEFMALGETHFATDDGSFGAHGNVGRLL SEALAKGRIPDAVYACGANGMLKAIDSLFPTHPHVYLSLEERMACGIGACYACVCHKKGD TTGAKSVKVCDEGPIFKASEVIL >gi|308151747|gb|GL476275.1| GENE 116 115643 - 116581 1073 312 aa, chain + ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 4 309 5 311 311 443 73.0 1e-124 MMKNPLAVSIPGLTLKNPIIPASGCFGFGEEYANYYDLDQLGSIMIKATTPQARYGNPTP RVAETPSGMLNAIGLQNPGLDVVMQEKLPKLEKYPNLPIIANVAGACEEDYVAVCAKIGQ APNVKAIELNISCPNVKHGGIAFGTDPDIAFQLTQAVKKVASVPIYVKLSPNVTDIVPIA QAIEAGGADGFSMINTLLGMRIDLKTRKPILANQTGGLSGPAIKPVAIRLIRQVASVSQL PIIGMGGVQTVDDVLEMFMAGASAVGVGTANFTDPYICPKLIDGLPKRMEELGIESLEQL IKEVREGQQNAR >gi|308151747|gb|GL476275.1| GENE 117 116571 - 117284 908 237 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 235 4 236 237 284 62.0 9e-77 MHDRPIIALDFPTQKEVAVFLEKFPKEEALFVKVGMELFYAEGPAIVRWLKEQGHDVFLD LKLHDIPNTVEKAMTNLAKLGVAITNVHAAGGVRMMQAAKEGLIKGTQPGAKVPELIAVT QLTSTSEEEMHHDQLINVPLETSVIHYAKCAEKAGLDGVVCSALEARGIQEATKQTFICL TPGIRPAGSAVGDQQRVVTPQHAREIGSTYIVVGRPITQAENPYEAYQEIKKDWSGK >gi|308151747|gb|GL476275.1| GENE 118 117286 - 117918 870 210 aa, chain + ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 4 210 3 209 209 272 66.0 3e-73 MTKVAKKIAKDLLDIEAVFLNPNEPFTWASGIKSPIYCDNRITMSYPAVRKEIAEGLAAK IKETFPEVEVIAGTATAGIPHAAWVADILGLPMVYIRSKAKDHGKGNQIEGRISEGQKMV VIEDLISTGGSVLEAAEAAEREGATVLGVAAIFTYELPKGTANFADKQMTLLTLTNYSTL IDAALEANYIEEKDVTLLQEWKKDPENWGK >gi|308151747|gb|GL476275.1| GENE 119 118116 - 118814 488 232 aa, chain + ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 8 228 47 270 275 126 34.0 4e-29 MKKIKNMDVEWSYTGNDGPEHWHTLCDWFAEGAKFAYQSPIALEKESAETVNSQITFHYK KEEFTEKEFKNTFHFVPPNTESYVMFENVAYHLTDIHFHMPSEHLLSGKQYPLEFHLVHM NDAGENLVVGCLFTITEEENRFSEANHPMDWENGTHQQWFNPSIFLPEERLHYHYVGSLT TPPTKGPVKWFVFDTIQKMDQAFLNKIKEGMLAFNNRPLQPLNGRKIYFSND >gi|308151747|gb|GL476275.1| GENE 120 118833 - 119762 937 309 aa, chain + ## HITS:1 COG:SPy0824 KEGG:ns NR:ns ## COG: SPy0824 COG0583 # Protein_GI_number: 15674863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 304 230 41.0 2e-60 MNIQQMKYVAAIANNGSFREAAKKLFITQPSLSNSIRELEEELGISLFLRTNKGAFLTEE GMVFLEQAEKVLVQMELLENRYRETVTSERFSISSQHYDFLGEVIAKVLKKYGDQYKDFR VFETTTLKVIEDVKGFHSELGIIYLNEQNSVSIERYLEQANLAYEVISTFNTHIFLGNHH PLAKQKEIHLEELVPYPQVRFNQEGSNFSYFSEDLVEIPEQESVIHTTDRGTLMNLLVET NAYASGSGVVTGFTKKEIRLVPLAPALENRICLLFPKNREISPIGRHFIKELKALFKKEV DTKTFSTKE >gi|308151747|gb|GL476275.1| GENE 121 119951 - 120997 1033 348 aa, chain - ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 342 1 340 345 296 45.0 4e-80 MKQPLYQQIIDYLQNEIDSGRLPVGAQVPTEKELSAQFNVSRITSKRALTELETQGVIQR HQGKGSFVQAPKHPLHTSLNKVLFLLPFADDLSVGNFYSGLAPTIQAAGLEVFMTSPNFL REKNAADIVNEFAGLVYYAATSNDYLDLLFELALMNFPVVVLDKKIHDLPFATIQSDNFA GGKTATERLIGLGHTKIGYILSGSPALQSVRQRYLGYLQALKEANLAFHTAITETNLLDE HNFKQYFEAHQLTAVVCDNDFSALHCLRNCKNLGIHVPEELSIIGFDDIQAAAFVEPPLT TMAQDFKEIGKLAGEVLLQTMQQDIQIIEDIQVPVTLIERETISTVSK >gi|308151747|gb|GL476275.1| GENE 122 121154 - 122443 1547 429 aa, chain + ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 429 5 431 431 649 71.0 0 MVYTEVPKSVATFMETITEKCGEAHQDWAKNFQAAFANTLLTTVKRQEDGTTFLLTGDIP AMWLRDSTAQVRPYLVIAKEDEDLAQMIAGLVKRQFRYICIDPYANAFNETDNHAGHQTD KTEMNGWIWERKYEIDSLCYPVQLAYLLYKNTGMTEQFNSDFVEGVKKILNVFTTEQDHA QSPYLFERDTWRQEDTLVEAGKGIPVGKTGMTWSGFRPSDDACQYGYLVPSNMFAVVILG YIQEIFSDVLEDATIVAIAKKLQEEIEEGIQTFGRTKNQNNETIYAYEVDGLGNASVMDD SNVPNLVAAPYLGYCSTEDEQYLTTRQTLLSKENPYFYEGKYAKGIGSSHTPENYVWPIA LAMEGMTTKDKAEKERILDLLVATDAGTHLMHEGFDVDNPENYTREWFSWANMMFCELVM DYFDIRVEK >gi|308151747|gb|GL476275.1| GENE 123 122455 - 125145 2895 896 aa, chain + ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 1 891 1 891 899 1083 60.0 0 MTKKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDD YLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQL GYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGPDQT KIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDIT KAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSAR VYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDE VHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVE VEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQ PYMAKYLTVELSVKEMAPFSWDSFALIQGKTKAFEGSLLAQPATNEMENEFIQVKIENNG SLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKAS YQIKQTVMLPVSADERLEEEQKAVREFRERQAQRSTTLRPFEITTVVTMIKESNQLFFET TINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDAWENPTNPQHQQAFVNVHD QNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLH GKPEERFATYQQAYSAQIPFTAATTTRHEGKLAPNHVYLTTAEGPIGWTAVKRQEQTNHL VVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFEK >gi|308151747|gb|GL476275.1| GENE 124 125307 - 126485 1514 392 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 386 389 513 66.0 1e-145 MDLTNRFNRQVNKIAVSLIRQFDEQVSGIEGILKLTLGEPDFNTPEHVKKAAKEAIDANF SHYTGMSGLLDVREAAAYFMKEKYHLTYQPGTEILVTVGATEAISASLLAILEQGDKVLL PAPIYPGYEPIITLAGAEPVYLDTRGNDFVLTPEMIEAAMAEHGEQVKAIILNYPSNPTG VTYNRQELQAIADVLKKYDIFVISDEIYSELTYDESHVSIAEMLRDQTILINGLSKSHAM TGWRIGFIFAPAILTAEIIKVHQYLVTAAATVSQKAAVRALIEGMHDAEIMKEEYRKRRD FVYEQMTQLGFEVARPNGAFYIFAKIPTGYEQDSMKFCIDLAQKEAVALIPGISFGPEAE GYVRISYASDMDKLTTAMERIAHYMATQRVTH >gi|308151747|gb|GL476275.1| GENE 125 126596 - 127486 1143 296 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 295 1 300 302 360 65.0 2e-99 MKKRVIAATMLSLGLLLTGCGAQGGTTEKSSEADSNKPVKIVAVGSTALQPLVDAAKDQF TQEHPNYTVSVQGGGSGTGLSQVADGAVTIGNSDVFAEEKDGVDASKLVDHRVAVVGMGP VVNKEVGVKNLTKQQLIDVFTGKVKNWKEVGGKDQEIVVINRANGSGTRATFEKWGLDGA KPVQSQEQDSSGTVRKIVEQTPGAISYLAFSYMDDSTVALSIDGVEPKEEHVKDNSWKIW SYEHMYTKGEPNKEVKAFLDYMVTDDVQKTIVKDLGYLAITDMQVERDVNGKVTEE >gi|308151747|gb|GL476275.1| GENE 126 127528 - 129303 1538 591 aa, chain - ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 10 585 16 588 591 259 30.0 2e-68 MKKRLRIEYFFVAAVMLLLFVGSIAATNFFFQKEMVAQQETYLRRKNTLLTDQLPPSVFE KGQLTNQQQLLVTHALDDAEERVTLLQKNGTVFFDSSQNEPLESHKKRPEIAAVLSGATY GSALRKSKTLNKELLYVATPVLKSGEIVGIIRISEQTALFSKNIQSFRRYIIFTFGILFL LITLFIFLLLRQKNQPLVTVLPILKRMLKHPDENRSIIQQSSEWNELYETINLLSQQVSQ TYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSNYLEVIQD ADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVR QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVD KARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLPLTKKEA >gi|308151747|gb|GL476275.1| GENE 127 129300 - 130010 797 236 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 235 3 236 239 269 54.0 4e-72 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG LEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRL KPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVIN RETLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR >gi|308151747|gb|GL476275.1| GENE 128 130173 - 130637 530 154 aa, chain + ## HITS:1 COG:lin2433 KEGG:ns NR:ns ## COG: lin2433 COG1683 # Protein_GI_number: 16801495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 146 1 146 147 156 56.0 1e-38 MIGISSCLGGICCRYDGKSQEQEALKQLVTNGKAIMICPEVLGELPIPRPPAEIIGGDGF DVWANTAYVYTDNGEDVTEAFKAGAQRAYQKLKAQQITTLILKEKSPSCGSQLIYDGQFS GIKKAGVGVATAYFIQQGMTVYSEETWQLADISF >gi|308151747|gb|GL476275.1| GENE 129 130721 - 131059 490 112 aa, chain + ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 111 1 107 110 107 66.0 5e-24 MEMEKTNRMNALFEFYSTLLTEKQMNYMELYYADDFSLGEIAEEYEVSRQAVYDNIKRTE KILEEYEKKLHLYSNYVVRKEYLEQLQQYVQETYPKDSEIKKYIEQIQEIEE >gi|308151747|gb|GL476275.1| GENE 130 131064 - 132503 1872 479 aa, chain + ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 463 1 510 523 592 64.0 1e-169 MAFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERA VGVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKSPKIPTVIMMTGLQGAGKTTFTGK LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA KEKKNDYVLIDTAGRLHIDEALMDELKQIKELANPNEILLVVDAMTGQDAVNVADSFNEQ LGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGD MLTLIEKAQQDYDEKKAEELAQKMKENSFDFNDFIEQLDQVMGMGPIEDLLKMIPGMSNM PGIENVKVDPKDVARKRAMVLSMTPAERENPDLLNPSRRRRIAAGSGNSVVEVNRMIKQF KESKKMMQQMSKGDMNIPGMDQMLGGGVKGKLGKMAMNRMMKKNKKKKKKKRYPPPQRD >gi|308151747|gb|GL476275.1| GENE 131 132519 - 133271 827 250 aa, chain - ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 239 1 234 255 154 40.0 1e-37 MEYTIKKMASLSGVSARTLRYYDEIGLLQPARINSSGYRIYGQAEVNRLQQILFYRELDL KLDEIKEILEQPDFNVEQALYEHQQKLLEKRNEIDRLLASVQQTLHHYKGEINMSDQQKF EAFKQQKVQENEEKYGKEIREKYGNETIEQANKKYLNLTEKDMQAMQNVEKDLFSKLAMY QKSPKLTSQLAQEIFQLHKDWLMYSWSSYSPEAHKGLGLMYVGDERFTSYYEQHGAGFAE ALNAIIQNYA >gi|308151747|gb|GL476275.1| GENE 132 133392 - 133946 720 184 aa, chain - ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 181 3 187 190 157 42.0 2e-38 MTKKIGIFVGSLRKDSFNKLVAKTMADLFPADFEPVFINIGDLELYNQDLDDEGTPTEAW TTFREEVKQVDGVMFVTPEYNRSVPAVLKNALDVGSRPYGESVWDKKPGLVVSVSPGAIS GFGANHHLRQSLVFLNVPTLQQPEAYIGGITNLIGEDGKIIDGTVGFLQSIVDAYVDFFN RLTA >gi|308151747|gb|GL476275.1| GENE 133 134088 - 134891 648 267 aa, chain + ## HITS:1 COG:no KEGG:EF1695 NR:ns ## KEGG: EF1695 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 27 267 1 241 241 431 96.0 1e-119 MNKKINWRRQLTPSEKQTLTELRNKEMIKQGTFYKLEQTFPEKSAYTYYGLYRKGQAIQA YIVGYCFDGETLEATIVAPNVGPFVEELVQELEKQAALWGMKEVFLVMDDKQSVGLNYFN RQGIVPAFSEQYLVFQRETYSQELAKLTLLRPQAADLHSLARLLEGTPLPEDLQRTLIYK ENNQLLATLRLDHFENEWGIYGFVVTKTQRGRGLGRQVLQSALRMILEKSASATIFLEVE TENQAALHLYQTEGFQVRNQYNYYQIL >gi|308151747|gb|GL476275.1| GENE 134 135020 - 135313 493 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 [Enterococcus faecalis TX0104] # 1 97 1 97 97 194 100 3e-48 MEVYLIMAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKED LVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK >gi|308151747|gb|GL476275.1| GENE 135 135325 - 135570 349 81 aa, chain + ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 3 75 4 75 79 83 65.0 8e-17 MADVKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRT IVYSVRIDGPKKVRLNILDGK >gi|308151747|gb|GL476275.1| GENE 136 135691 - 136257 628 188 aa, chain + ## HITS:1 COG:no KEGG:EF1692 NR:ns ## KEGG: EF1692 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 330 100.0 3e-89 MAKRIIIMNFDIESKSYQAFSEIKKMQAERQLKGEQMAVVTHVNDGQHQFKINDFIDFTG NNHTSKDSMIGMLVGILGGPLGILFGWFAGSMYGASKDAKEIQEAQTVFEHVIQKIDEGQ TGLLLIAEEEDNRPLNQLVMFDLGGEITRLDLEEVQQEINDANEVANEAKQSWQAKKEQH KEATSKEE >gi|308151747|gb|GL476275.1| GENE 137 136472 - 137413 993 313 aa, chain + ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 299 1 300 307 342 57.0 4e-94 MEIQFLGTGAGVPAKHRNVTGIALKLLDERNAVWLFDCGEGTQLQILKSSIRPRKIEKIF ITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGVADFVKTSLRVSQSRLSYPLKFIEL TKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPLYGKLK RGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHESTFNKHEA KMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQLQEEAQEIFPNTKIVKDM DIIEIPFANEGGA >gi|308151747|gb|GL476275.1| GENE 138 137414 - 138202 1001 262 aa, chain + ## HITS:1 COG:SP0675 KEGG:ns NR:ns ## COG: SP0675 COG0300 # Protein_GI_number: 15900576 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Streptococcus pneumoniae TIGR4 # 8 262 4 251 251 234 45.0 2e-61 MDLTNKVVVVTGGSAGLGEQICYEAAKQGAVVVVCARRINLIGKVREQCAALSGREAFSY QLDIADPESVERVVEAISAEVGPIDVLVNNAGFGLFENFVEIDLAVARQMFDVNVLGMMT FTQKVAIKMIEAGQGHIINVASMAGKMATAKSTVYSATKFAVLGFSNALRLELKPLGVAV TTVNPGPIQTEFFDKADPTGTYLAAVDKIVLDPTKLAKEVVGSMGTSRREINRPFVMEAA ARFYTLFPHLGDFIAGNILNKK >gi|308151747|gb|GL476275.1| GENE 139 138219 - 138686 667 155 aa, chain + ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 1 77 1 77 107 62 40.0 4e-10 MKNQWRVILGLVLVLIVVIFAVLNNQAVPVNFGFTKISGPLILIILGSAIIGALVGLLTS TTTIWNQRKELKAVQKELVIYKNDMDKLVKEETEKVQRSFDNQLADLQVKQAAAPQVAEP VVNEQTSNTEVDATPVSGSRIDRYVKPRVNEEEQK >gi|308151747|gb|GL476275.1| GENE 140 138841 - 141153 2191 770 aa, chain + ## HITS:1 COG:SPy0926_1 KEGG:ns NR:ns ## COG: SPy0926_1 COG0608 # Protein_GI_number: 15674946 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Streptococcus pyogenes M1 GAS # 1 571 1 570 580 540 50.0 1e-153 MKKSNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY DPFLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNR FVHGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPE AFAIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPIELLDLVAIGTIADLVSLTDENR TFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAPGVEL MTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQGWHEGVLGIV AGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFTHFGGHHMAAGMT LPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQLRILAPFGTDNT VPTFVFKEITPTQIRKIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADVAGQL SINEWNGRKKPQLMVTDFAVSGRQLFDFRGKNNQTKPIPSEATAYLLFDEKNQKFISDPT ANIIVWSNQEELVEAVSQNQIEQLVFVDCPVEAITVKEIVEATEIQRIYMMFISPEEAYL NGMASREQFATLYKFILQQKEVNLRSQLSKVANYLNIQEKLLIFMIQVFFDLGFVTIESG VLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWLWNEEDK >gi|308151747|gb|GL476275.1| GENE 141 141156 - 141668 796 170 aa, chain + ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 1 170 16 185 185 253 72.0 1e-67 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY >gi|308151747|gb|GL476275.1| GENE 142 141774 - 141971 242 65 aa, chain - ## HITS:1 COG:no KEGG:EF1686 NR:ns ## KEGG: EF1686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 103 100.0 3e-21 MEAIRRVGFLFFVLVIGIFLGTLGLRLAFMIVTPLFILWFMSWDEKRYTRTRKQQQARYV YRKFP >gi|308151747|gb|GL476275.1| GENE 143 142165 - 142818 791 217 aa, chain - ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 1 216 1 215 217 194 54.0 9e-50 MEKTHFSKKYLIVNEVLNAVTHGIGAGLSIAGLVILLVKGARLGSPIHVVSYAIYGSMLI LLFLSSTLFHSLIFTRAKKVFQVFDHSSIFLLIAGSYTPFCLISIGGWLGWTLFSLVWLI AIVGIVYKSLTLHKQETVKNISTIIYIVLGWLCIIAARPLYESLGFTGTALLVAGGVSYT LGAAFYSLKNVRFMHVVWHLFVMLAAILMYFSVLFYT >gi|308151747|gb|GL476275.1| GENE 144 142950 - 143792 1096 280 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 284 53.0 2e-76 MTNVKIVTDSSCTMEKSLRDELNIHMMPLSIMVDGVVYPDDDHLPGEKFMDMMANAKALP KTSQPPIGEFVELYDRLGEDGSEVISIHMTKGLSGTVEAARQASNLSSSKVTVIDSDFTD QGLSFQVIQAAKLAQVGAGVPEILAEIERVKQNTKLYIGISTLDNLVKGGRISRTTGLLS NIFNMKVVMDFENTELIPVAKGRGVKTFNKWFDELKSELSKIPNVRQIGISHADGLELAN GFKEGLQAIFKDMDIPVLHTNPVIATHTGKNAFAIMYYTD >gi|308151747|gb|GL476275.1| GENE 145 143896 - 144795 971 299 aa, chain + ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 23 280 27 273 286 260 50.0 3e-69 MKKQTQHILLTVLTPILIALGVFTLLSVAIPKAKPLLKQEKVATTFQKNQKEVIHYTAIG DSLTEGIGDLTNSGGFVPIVADDLKEHYNLNGVQTDNFGKNGDRSDQILKRIKEKPEIQK GLASADVITLTVGGNDLMKVISSNIFDLKVSSFNRPQKAYQRRVRRLLEEIREYNEKAPI YVLGIYNPFYLNFSEITEMQEIVDNWNQATEEMVQEQKRAYFIPINDLLYKGRGDEVGVT GGDSETTGSSASKEDLNNLLYEEDRFHPNNLGYQIMAGAVRDEMVKTEKEWITKSEGSE >gi|308151747|gb|GL476275.1| GENE 146 144797 - 145441 614 214 aa, chain + ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 23 209 8 193 195 125 37.0 8e-29 MNEEKPKTSKSIKKTQPTNLKRNPWKIAFLVLVGLVIGSVAFVTFRATQVREPDLKKIPA IVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIP FYLYFDPYVMANGNVQLKAKSLSIGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLR LDQFRMQNGLFVRAEKINLVDDDIRMNIYLPKEK >gi|308151747|gb|GL476275.1| GENE 147 145458 - 145973 696 171 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 3 170 2 169 169 243 70.0 9e-65 MEEKAIFAGGCFWCMVQPFDTQPGIISVVSGYTGGHVPNPTYEQVLTHTTGHTEAVEITF DPAIISYEQLVDIYWQQTDPTDAFGQFQDRGDNYRPVIFYRSQEQKEIAEKSKERLANSG RFTKPIVTTIEPAAPFYPAEEYHQDFYKKDALRYGLSHQRRSEFIEEKWSD >gi|308151747|gb|GL476275.1| GENE 148 145979 - 146197 270 72 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 68 1 69 77 70 59.0 6e-13 MRRSFYHYLMTLKGPAKDSETDFANEAAKDIQFPKQTEDYHELSSYLEMNADYSSNMDIF DELWEKYLENNK >gi|308151747|gb|GL476275.1| GENE 149 146294 - 147727 1807 477 aa, chain + ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 9 470 31 491 496 302 38.0 1e-81 MKNKRTVPFYQYIISLLCVAFLAGGSSYIYFDHRVKKMSQEGAITNADLSKVQDLYNEIS TNYVGEVDKNELVEGALKGMSEAIGDPYSTYLNESAANDLNESLSGDFEGIGATMTMKDG EPVVAEAPVADSPAEKAGIKEGDIIEKVDGTATKGMKLAEVVSKVRGKKGTSVELTIQRE GETKNISIKRGKIPVKTVTGELDKNDAQIGSIKITSFGKKTYQELKETITNLRDKGAKSF VIDVRQNPGGLLDQAERMASMFLKNGETIVQFEDKKGRTMKEVASKELDGGFKVEEPVAV IIDGNSASASEIFAAALHESANVPLIGTKTFGKGTVQTVKDLNDQTEIKLTVLKWLTPKG EWINEKGIEPTIKADYPEYAYLKLIPRDKTLKEGDQSEDIQNLNAILAVLAYPIDENNAN YTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLGKLILENDAAYDTAVKEIQKN >gi|308151747|gb|GL476275.1| GENE 150 147746 - 148300 506 184 aa, chain + ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 27 182 25 179 180 135 44.0 5e-32 MKKKRDYVGYLMYFLKILVPAIVAVFILRGFFLIPVRVDGHSMQKNLNQGDMIVMEKFSA IKRFDVVVFKTDTGSILIKRVIGLPGEAVRYENDQLYVNNQPIAEPYLTKNRKKDHETMP YTTNFDSKELLMQEKLPKDSYFVLGDNRRMSKDSRSFGAIHADQILGKAQFVYYPLTHMK IIPK >gi|308151747|gb|GL476275.1| GENE 151 148421 - 148864 510 147 aa, chain + ## HITS:1 COG:no KEGG:EF1677 NR:ns ## KEGG: EF1677 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 170 98.0 2e-41 MIRKTILASSILGVGLLIGACGNQTQTQMNSTNTSESSQPKVTESSRKSSESASNNEGVS SDSNKPTSSTTESEILKGLAEEKTLKEKIPSLNQTTIKKVTDNEYKRILVMEEKATGTTY KSILIKKQNRLKIVNETTDELLYNGTL >gi|308151747|gb|GL476275.1| GENE 152 149013 - 149381 544 122 aa, chain + ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 110 45.0 9e-25 MEFNFSGEKPLFQQVADQIAEGIFNGAYLEGEQIPSTTEISKSYQINPATVLKGMNLLVE RQLIEKKRGIGMFVLPDAQERVRSARKEEFLNKEVLEVVAEAKKLGITAEQLKQLIERGY DA >gi|308151747|gb|GL476275.1| GENE 153 149378 - 150232 853 284 aa, chain + ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 278 4 282 283 171 35.0 1e-42 MSLRVESVSKKYHQKKALDNISITFEKETIYGLLGRNGAGKSTLLNIINNRSFATSGSVQ LAGETVTDNETALNHIYLMSEDNLFPPQLKIKDIFKTTEGFYGSFDWSLAEQMLSDFGLD SKKTFKKLSTGYRSIAKLIVALSVPCEYIFLDEPVLGLDANHRELFYTYLIETYQERPRT FVISTHLIEEIANLLEDIIIIDQGKLIRAESIETILKNGRIVSGPKEQVERYTQSLEILG MDTLGGAVTAYVYGDLPTEKAEVQIAPLNLQTYFVQLTNRKKEK >gi|308151747|gb|GL476275.1| GENE 154 150234 - 150965 560 243 aa, chain + ## HITS:1 COG:no KEGG:EF1674 NR:ns ## KEGG: EF1674 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 350 97.0 4e-95 MKFKTALQYRVIYQVRSLAIYFGFYALFGILFPLIGLLFSNDVNTVSSDAVIPCLVFMGI LSFLGVNTDFKLFIQNGLSRWTIFLVNFVSNAILSLVGSLAVLVLIKVFSGNFISHFQLS MKLIDVYAQGNFFMSWLLFFILLMLSGSLGLLAGVFNDRIDGVKKLIILLLLLMIPILLG TIAQLGGAPMRLRMLHVLQAMVGYQSTGFTVLPLLLTISCFVGINLGLAYLLNKHREIKR VNA >gi|308151747|gb|GL476275.1| GENE 155 151158 - 151838 288 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 202 4 199 223 115 35 2e-24 MAVIEAKNIKKSYGKNETKFDALKGVDLKVEKGESVAIIGKSGSGKSTFMHILALLDQPT SGDIYLNGKNVTSIRKKVLNKTRNEEFGFVFQQFFMNAKDTVLNNVLLPLKIGGISGSKR KKMALDALKAVGLEDKVQNKANNLSGGQKQRVCIARALVNNPQIIFADEPTGNLDSATGK KIEELLFDLNKNKGITLIIVTHDPDLAARCDRQVHVRDGLIVGGDE >gi|308151747|gb|GL476275.1| GENE 156 151839 - 153122 1370 427 aa, chain + ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 1 424 1 438 440 120 25.0 5e-27 MKFRDILKSASTNLMRNKGRTVLTIIAIFIGAFTIALTTGVNIGVNDYIDKQVGSVGGAN QLFIQPKMEMNVGNGTEPSKYNPEKKTSTIQQQSMLAEKDIEKIKKISDVTSVEPMKSVA IDYIKGADKNKYVFSATSALDEMTIDLAAGRKVSQTSQDFEINLSPEYVKALGYTSSKAA VGETVQLGISSSLKGQEQVIEAKIVGVRNASVIQNGLSLMNKALIDKVVSINQADLPEHL KNQYAMIIAEVKKDSTPEQIKDIKKDLDKAGYLATTVEDEIGMIRNIINAITGVLTMFGA IALLAASFGIINTLYMSVQERTREIGLMKAMGLSNGKVFTIFSVEAALIGFFGSILGILG AVGVGNLVNRLATDSFLKALTGFKLIQFSLPSSLTIILVIMFIAFLAGTLPARRAAKLDP IESLRYE >gi|308151747|gb|GL476275.1| GENE 157 153240 - 154181 1149 313 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 309 313 451 73.0 1e-127 MKAVVINQYGSKEVLEEAEVTLPELSEHQVLVKEYATSINPIDWKLREGYLKQMFDWSFP IILGWDVAGVITEVGSQVTDWQVGDKVFARPETTRFGTYAEVTIVDDHLLAKIPETISFE EAAAVPLAGLTAWQALFDHGHLKEGETVLIHAGAGGVGTYAIQLAKEAGAHVITTASAKN HALLKKIGADEVIDYHTTNFAEVLTDVDLVFDTMGGEVQKNSFDVLKPNTGRLVSIVGIE DKQLAAEKNVSAESIWLQPNGEQLQKIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSET HHAVGKIVVQMAE >gi|308151747|gb|GL476275.1| GENE 158 154261 - 154863 652 200 aa, chain - ## HITS:1 COG:SA2306 KEGG:ns NR:ns ## COG: SA2306 COG0400 # Protein_GI_number: 15928097 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 184 1 184 197 217 55.0 1e-56 MHSIFKKGHPEAPVFVLLHGTGGDETSLLPIAQELNKQATVLSIRGDVSENGMNRYFKRL AEGHYDLEDLEKRGEALHKFIQQAANEHQFSLDKIIFIGYSNGANIAIQLLLTHPDSYHQ AVLYHPMFPVELTNQPDLTDTSVLLSLGEHDPIVPLPESMRVIQLFQNHGATVQEVWTQS HQLTYQEIKETQTWLAHLSS >gi|308151747|gb|GL476275.1| GENE 159 154876 - 155838 1180 320 aa, chain - ## HITS:1 COG:SA2307 KEGG:ns NR:ns ## COG: SA2307 COG0346 # Protein_GI_number: 15928098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 442 66.0 1e-124 MKKEDQLLGIHHVTAMTSDAEKNYHFFTDVLGMRLVKKTVNQDDIYTYHTYFADDLGTPG TTMTFFDFPNNPKGLKGTNTISRTGFRVPSDAALTYYENRFNEFAVKHTGISEEFGKKVL RFWDFDDQAYQLISDELNQGVAAGTPWKKGPVPTEFAIYGLGPVEIAISYFHEFKEVFEE ILGFHVVAQEGNRYLLEVGQGGNGAQVILVDGDTSSQAQQGYGEVHHVAFRLADRKSLGT WQALFDHLGLQNSGYVDRYYFESLYVRIGHILVELATDEPGFMGDEPYETLGEKLSLAPF LENRREYIESVIKPFNTKRA >gi|308151747|gb|GL476275.1| GENE 160 155849 - 156277 581 142 aa, chain - ## HITS:1 COG:SA2308 KEGG:ns NR:ns ## COG: SA2308 COG1846 # Protein_GI_number: 15928099 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 141 1 141 144 123 44.0 1e-28 MSQQQEALKAYIGLLRTSHQLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTLIEEIFPMHAKRIAEAFE QLSSEELTLLQKTLRKITNETK >gi|308151747|gb|GL476275.1| GENE 161 156406 - 157200 931 264 aa, chain - ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 271 53.0 7e-73 MDLHLTNKLALITGSTKGIGKAIAIEMAREGTDVIINGRNEAEVTKVVKEIQTMFPDTHP QAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWEKFFTVNVLSGNAL AKAYLPKMLAQDFGRIIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPDSTLTEGVEKMLEDMYADSDIPKEDWEKDFMKNHRSRSQIQRLIRPEEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|308151747|gb|GL476275.1| GENE 162 157451 - 158149 534 232 aa, chain + ## HITS:1 COG:no KEGG:EF1666 NR:ns ## KEGG: EF1666 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 373 99.0 1e-102 MKKQYYWNIPDNLLNSLKQRKKLYSFYKNEQNKARELVENCQSVLFPELVASLNKIDERI KLLIFYQNLEDCELSEEEIITVIEREYFVTFYETIEEPTTEIISSHSMYYLLQQPTKEML WDLDFSNMLKQGQLVDLMDYQKLTKCYQKLQNQAKNLIEKLNKETFYTFYSQLLLIDCQC KLLIEEALLKEESLMTVDECLTAIKQEIRKIHFEQFKYQHYLFEDLSLRYQV >gi|308151747|gb|GL476275.1| GENE 163 158254 - 158976 699 240 aa, chain + ## HITS:1 COG:no KEGG:EF1665 NR:ns ## KEGG: EF1665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 410 99.0 1e-113 MNANRLKLLMMGLMVLDHISYFVPPEWALIFHVITRCVGVFFGYMAVEGFNYTRNVYRYN GRLYIWAAIMFVGNTLLNHLVNNPAVTVHNNIFFTLALGVSMLIVTKAMLEMPKISLKIV LLISILAILGIGAMFAEGGIVMLPFMLITYLARKRLVLRNCLYGALALFFLVTSFQWLGD WPTTIEMLAYNSDFMFITVLPFISLYNGERGSKAPFFKYLFYGFYPLHLWLIALIANYVH >gi|308151747|gb|GL476275.1| GENE 164 159036 - 160070 870 344 aa, chain - ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 19 311 19 308 310 342 66.0 8e-94 MALLLFFLFIALLGFGILKINNRSILGGITLASGTLLSLVTLLFIGLDKIYLHFKNGDLI TLAIAYLLIPAVFIGICLYFIFNSRTMQTKEGKSVTAKLSAGLGLNLLIALPAFLYLLSV GTAQIPYVLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAVDYIIVLGSGIRSEE VPPLLKSRLDKGIEYYEKNPTAKFVVSGGQGPDEPVAEAFAMKKYLLSQNIPAEAILMED QSTTTYENMLFSKAIIQADWQKMPSDSKQPSVIFSTNNYHVLRGAMYAHRVGLKAEGVGA PTALYFLPTALIREYIALLVHDKRIVLFVFLLVTLLLGISILPI >gi|308151747|gb|GL476275.1| GENE 165 160353 - 161174 842 273 aa, chain + ## HITS:1 COG:lin1406 KEGG:ns NR:ns ## COG: lin1406 COG0280 # Protein_GI_number: 16800474 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Listeria innocua # 2 273 16 286 288 190 41.0 2e-48 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQE AVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCA MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNNQ QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKMG GTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQV >gi|308151747|gb|GL476275.1| GENE 166 161193 - 162275 1227 360 aa, chain + ## HITS:1 COG:lin1407 KEGG:ns NR:ns ## COG: lin1407 COG3426 # Protein_GI_number: 16800475 # Func_class: C Energy production and conversion # Function: Butyrate kinase # Organism: Listeria innocua # 4 352 5 355 355 352 49.0 5e-97 METVLVINPGSTSTKLALFANHDCLAEETLRHSVQELAPFENVVSQTPFRKQMIAEFLET HNITQLAAVVGRGGLLKPIPGGTYLVDQQMLEDLRTERFNTHASNLGAILANEFAEKYHV PAFIVDPVVVDELQPLARISGLKGIQRRSVGHALNQKAVARKIAEDLGKTYEQSNFIVVH LGGGISLGAHQKGRMVDVVNGLDGEGPYTPERSGALPLVEFAQWILEQELTISQVKKLIA GNSGLKSYLGETDLRHIQAQIAAGDQTANYYLKGMCYQIAKSIGEMAVVLEGTIDAIILT GGAAYSQTVVQEISQKITWIAPIKVYPGEMEMAALYEGVNRVLTGEEQALNYSEAKIEQE >gi|308151747|gb|GL476275.1| GENE 167 162281 - 163690 818 469 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 468 5 457 458 319 38 7e-86 MAEQTDLLILGGGTGGYVAAIRAAQKGLNVTIVEKYKLGGTCLHKGCIPTKALLRSAEVF DTLKQAASFGIETEAASIDFSKIQQRKEGIIEQLHKGVEGLCKKNKIKILAGEGAILGPS IFSPVSGAVAVTFNDPTREEEIIVPKNVIIATGSSPKTLPNLPLDEEFILSSDGMLELEE LPESIAIIGGGVIGVEWASLLNSLGVNVTIIEFLDRLLINESATISKELKKRLEQRGINI LLGSKVQEAKVTGQKVQVEVAGQESLTVDKVMVAIGRQPNINKLGLQNTSVKYTDKGIEV NEFYQTTEGHIYAIGDCIDTLQLAHVAMKEGELAVQHLLDETVEPLNYTNVPRGVYTNPE IASVGYTRETLPADKEVVIGTFNFNGNGKSLVYGETDGFIEVIRDKKTDDLLGVSMIGPH VTDLIAEASTAMYLDAAPIEIGEAIHAHPTMTEVLQEAALDTYGLAIHK >gi|308151747|gb|GL476275.1| GENE 168 163707 - 164693 1203 328 aa, chain + ## HITS:1 COG:lin1409 KEGG:ns NR:ns ## COG: lin1409 COG1071 # Protein_GI_number: 16800477 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 3 326 2 325 331 323 53.0 3e-88 MKTLKKSGLSKEELIQAYRQVLRGRRLDERLWQLTRIGKTSFNISGQGAEVAQVAMAMAF NPQKDYFLPYYRDMTACLVWGMTSKDILMGSFGKEADPSSHGRQMPNHYGSKEHNIVSFS STVSTQMPLATGVGYAAQLQKADFVALTTTGEGSANQGEVQEAMNFAGVKKLPVIFVVEN NEYAISVPIEEQYANKRMADRAKAYGFEGVTVDGSDFAEVYLAFKEAVKAARGKKGPKLI ELMVSRLTSHSADDDQSVYRSKEEIEEMKKNDAVKLFEKQLLEEGYLTDEDIAKIDEEIR AEINQATDEAEAMPDPVPTSILEEVYAK >gi|308151747|gb|GL476275.1| GENE 169 164715 - 165701 1434 328 aa, chain + ## HITS:1 COG:lin1410 KEGG:ns NR:ns ## COG: lin1410 COG0022 # Protein_GI_number: 16800478 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 328 1 327 327 424 61.0 1e-119 MAEMTYLEAINLGISEEMARDEKVVIFGEDVGGDKGGVFGVTKGLAAKYGDERCFNTPLT EGLIGGLAVGLGLMGYRAIGEFQFADYILPATNQLLSEARTMRYRTKGDWTAPIVYRTPY GGGVRGGLYHSQSTEKVFCGQPGLRVVTPSNPYDAKGMIKAAIRSDDPVIFYEHKRLYRL LKDEVPADDYIVPIDKANVVRTGSDLTVISYGMTLQLALAAAEKLAAEGIDAEIVDVRSL YPLDRETLVAAAKKTGKVLLVTEDNKEGSVMSEIAAMISEDALFDLDAPIQRLAGPDCPS MPYALPLEREFLINEEQVLAAMKELAEF >gi|308151747|gb|GL476275.1| GENE 170 165725 - 167023 1540 432 aa, chain + ## HITS:1 COG:BS_bfmBB KEGG:ns NR:ns ## COG: BS_bfmBB COG0508 # Protein_GI_number: 16079459 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 1 432 1 424 424 372 48.0 1e-103 MATKEIKMPHLGESVTEAAIVQWLVKPGDSVKRYDPLMEVVSDKVTTEVPSDFDGVVKEF LISLDTDVPIGTAVMTLETEETTEKTEVATLAPVKEASAEQAQEHETVATTSTATSHQKN NGRYSPAVLKIAQEKKIDLTQVTGTGRDGRITRKDVTNFTPTQARTPEKTVSPGTSPSIS EEPVASQNESAATASPTETSPDKIVSADPVRKAIAKKMVQSVNEIPHAWLMVEADVTNLV QLRNSLKDEFKQQEGLSLSFFPFFAKAVIQALKKNPKINTSWDDGSIIYHKDVNLSIAVT TDEHLYVPVIQQADNYSIAGLAKEINRLAQEVRQGTLASKEMQGGTFTLNNTGTLGSVQS MGIINHPQAAILQVESINKRLVPTADGGFKVADMVNLCLSIDHRILDGQQAGKFLRDVKD NLAKYNADTDVY >gi|308151747|gb|GL476275.1| GENE 171 167167 - 168219 1157 350 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 15 350 12 352 352 249 49.0 5e-66 MPTDKLDAQLTPRIFFNKVLAGTASGTIIALIPNAVLGAILKYFAEYKIIEMIIHAAQIF QLATPLIIGGLIAFQFGLTPQKMMIAGGAAFAGSGVIKFNSEVKGFIGAGTGDIINIMIT ASVAVLLLLVIDKKFGSVEIIALPIVVGVGAGLFGMLIYPYVTQITVAIGKVINNFTDFQ PIIMSILIACSFAALIISPITTVAIGLAIQLNGLSAGAAAMGIAATTVVLVINSWNVNQS GVTLAVSLGGMKMMMPNLFKYPIILIPCLFTATISAIPVVLFNISGTPQSAGFGLVGLVG PLASLDAGLGILPLLFSWFVVPIVAGLFSKFLFEKVLKLYDSKVVFAYQG >gi|308151747|gb|GL476275.1| GENE 172 168228 - 169118 811 296 aa, chain - ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 295 4 292 295 116 25.0 6e-26 MNIQLLKYFIEIVNTRSLSAAARNLFVTQPTLSLALKKMESELGTALFDHSDQPFQLTDT GVYLYEHGQEVVFQFDQLVTDIREMNQKPVKKQLRLGLTTLFAVQFMKEISRFLTTHPHV NLILQQDGSPKLQTMLANKEIDMGLISFPNTLPEIIHIEPLETTTKGYHVYVVVPESNPL SQYEKLTFKDLKDQRFSSLSDNFMIGRLLLDRTRSFGYEPNIILHNDDLQVLLYSLQKNN SICLLPIEYYEVGKSQGLKWIPLKDKFDYFPIGIALRRDFSMTEDVRDFIQIIKEN >gi|308151747|gb|GL476275.1| GENE 173 169295 - 170236 964 313 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 409 62.0 1e-114 MKIIIAGAGAMGSRFGLMLHQAGNDVIFVDGWPEHIEAIRKNGLVADFNGEVVTAKIPIY PQTEVASIDFTADLVILFTKAMQLEGMLEALEHFLNKNTKVLCLLNGIGHEDIIKKYVPY ENILLGNTMWTAGLEGPGKVKLFGNGSIDLQNLGAQSEQAAEAVIKVLNNAGLNARYSEN ILSSIYKKACVNGTMNGLCTLLDCNMADFGETEQADQIVQQIVNEFLAVAEVEQVTLDKQ AVLQQIRSCYNRETIGLHHPSMYQDLITNHRLTEIDYINGAIVRKGKVYGIATPYCQFLT ELIHCKENLLHAK >gi|308151747|gb|GL476275.1| GENE 174 170513 - 171364 946 283 aa, chain + ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 275 1 275 282 323 54.0 2e-88 MTIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKG DLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRA IRAMCIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKF EDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQL MLISQKRGFRDDYNRASEMIILEIRSGKLGTYTLDRWEELGDE >gi|308151747|gb|GL476275.1| GENE 175 171366 - 172133 1233 255 aa, chain + ## HITS:1 COG:SPy1162 KEGG:ns NR:ns ## COG: SPy1162 COG0164 # Protein_GI_number: 15675138 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pyogenes M1 GAS # 5 254 4 256 263 268 56.0 5e-72 MAKESIQAIKEALLTVTDATDERLASWREDERSGVQQAIKQWERRQLAKEKEWQLFKEMS QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQLDVPQPQ ESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGV TPIHRRTFAPIKDMI >gi|308151747|gb|GL476275.1| GENE 176 172193 - 173056 777 287 aa, chain + ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 81 287 79 284 286 219 52.0 5e-57 MEILQRQLLFKLAVCQGIGNLGILKVLQEAIAQKRVDFSSTEIIRIAEIKKYRELFEQSW LHHTIHSEALYIRQCQHQFMTILDAVYPKLLREIYNPPAILFYRGNLQLLSRRKIGIVGA RYATSYGLRVTEALVPKIVKEGFTIVSGLAKGIDSRSHEMAIQNGGQTIGILGTGLDVYY PYEKKELQQTMKQNQLVLTEYVNGSGPKKYHFPARNRIIAGLSLGVCVMEARKNSGSLIT AQAAMDYGREVFAVPGSIFQSFSTGCHELIQDGAKCVQTIDDICEEL >gi|308151747|gb|GL476275.1| GENE 177 173147 - 173800 576 217 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 2 217 4 216 230 82 30.0 8e-16 METLVRKRWLFGMQLLGFLILDQIPLMMVSVVQFSTENFWFRFVSGLVAVGLGAYFVYLF VAFLKKKKLITWTFLGIKETLPVVLLGLVIIFCVGILGDFLLRLEGLETTSNQQSVEEIV QAIPKGLILIFAGVIGPIFEEGIFRVGIQAFFKPASKIGILVSSILFALVHTPTDIGSFV IYWGMGLALSWVYLRTGRFEAAVLTHFVWNVIGILML >gi|308151747|gb|GL476275.1| GENE 178 173985 - 176063 2229 692 aa, chain + ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 4 574 26 589 589 810 71.0 0 MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDIENNYEPHYISIRG KGDVIKSLKAAAKKAEKVYLAADPDREGEAIAWHLAYLLGLDLKDKNRVVFNEITKEAVK AAFKEPRTINVDLVDAQQARRILDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIIDRE NEIREFKPEEYWSIDGNFQKGRKKFKANFWGVDGKKKKLPNAEAVKEITSRIDGKDYDVT KVEKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM RTDSTRIADSAKAEAAEFIEKTYGDEFSAHGGRKAKNTQGAQDAHEAVRPSSVLRTPDEM KKYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLQQNGVTFIANGSKVKFKGFMQVYV EGRDDGKEDKENILPELVEGDVVKSVDIEPKQHFTQPPARFSEATLIRTLEENGVGRPST YAPTLETIQRRYYVKLTNKRFEPTELGEIVNSLVSEFFPQIVDTHFTATMETDLDKVGEG QEKWVEVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCELCGHPMVIKLGRYGKFYAC SNFPDCRNTKAIVKEIGVTCPVCHEGQVIERKSKKNRIFYGCSRYPECDFTSWDKPVGRP CPKCGQYLVEKKVKGGKQVVCINGDYEENVQK >gi|308151747|gb|GL476275.1| GENE 179 176171 - 177478 1721 435 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 434 1 434 434 650 73.0 0 MTKKVTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNS LTNAVGVLKEEMRRLNSIIIGSADQTAVPAGGALAVDRDSFSETITEKIKSHPLITIKNE EITDIPEGIVIIATGPLTSESLSQKIQEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSR YNKGEAAYLNCPMTEEEFNAFHEALVNAEVVPLRTFEKEKFFEGCMPIEVMAQRGIKTML FGPMKPVGLEDPKTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEN AEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAA RLAKGEEPIEFPRETTLGSMAYYITHAEGKHFQPMNANFGLFPELPERIRDKKERYEAIA NRALDVQAQVIQSLD >gi|308151747|gb|GL476275.1| GENE 180 177690 - 178589 874 299 aa, chain + ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 2 299 3 300 300 312 54.0 5e-85 MEEKNWPELFARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLS ELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDA LFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVP FGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNA EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA >gi|308151747|gb|GL476275.1| GENE 181 178618 - 179166 814 182 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 5 182 2 179 179 244 71.0 9e-65 MVESQFHSTTICAVEKDGKFAMAGDGQVTMGESVVMKGTAKKVRRIYNDEVVVGFAGSVA DAFTLEEKFEGKLNEYNGNLTRAAVELAQEWRTQQSMQKLEAMLIVMNKEEMLLVSGTGE VITPDDGILAIGSGGNFALSAARAMKNFGDKEMPAKEIAKNALNIAADICVFTNHNIIVE EL >gi|308151747|gb|GL476275.1| GENE 182 179181 - 180584 1344 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 467 9 466 466 522 59 1e-147 MNELNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGP TGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSR VYAQALKKANQRLVKVLVPGIKKKQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTN RRTILEQLEKGLLDNREVTIEIEEPKKTMPAMNNGLEQMGIDLNETLGALSPKKKIERTV TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL >gi|308151747|gb|GL476275.1| GENE 183 180605 - 181387 943 260 aa, chain + ## HITS:1 COG:SPy1777 KEGG:ns NR:ns ## COG: SPy1777 COG4465 # Protein_GI_number: 15675618 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Streptococcus pyogenes M1 GAS # 1 260 1 259 260 272 56.0 6e-73 MATLLEKTRQVNELLQKNNLFDVQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKL DVNNARIKNMFKEKKFPQGYTEVVDMLKVTEANIPIDSDLTAFPFESRELYPFGLTTIVP LYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRTIEAEVRSATAVQMA INTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSL GMKGTYLKVLNQQFIKELEK >gi|308151747|gb|GL476275.1| GENE 184 181421 - 182296 1080 291 aa, chain + ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 3 290 2 289 290 255 43.0 6e-68 MTVQIENEFLIATFAEEGAELVSLQSKETGIEYIWQGNPEFWARHAPVLFPIVGRLKEDT YMYQNQAYHLTQYGFARDQVFDVIEKGGEEVSFSLKSTKETKKKYPFDFELVITYTLEHQ ELTVNYQVENTGKEEMYFGIGGHPAFNVPLESSLTFEDYYLSFSPKKSRTQIPLAGPFID LANKTLAQTNTSFDLTHQLFENDAMIFETKGQTAITIATDESDHQVTLSYPEMPFVGIWS PTPKEAPFVCIEPWCGIADAVDATGQLAEKFGINKLPANELFKTQYMISVK >gi|308151747|gb|GL476275.1| GENE 185 182338 - 182967 765 209 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 205 1 204 213 194 53.0 8e-50 MKIVILLLVAYLLGSIPSGVWIGKLFFKKDIRQFGSGNTGTTNTFRVLGKPAGITVLLMD ILKGTLATSLPYLFGLQGVNPLFFGVAAVLGHTFPIFANFKGGKAVATSAGMLLAYSPTF FIYSALIFVICLYLTSMVSLTSMISAVLITLSTIILPFTVPAILPTFNWLLTVIAIALTT FIFVRHRENIQRIKNGTESRLSFGLRAKK >gi|308151747|gb|GL476275.1| GENE 186 183520 - 184479 1198 319 aa, chain + ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 21 315 20 314 314 154 32.0 2e-37 MKKFTLTMMTLGLVATLGLAGCGKQEKKATTSSEKTEVTLPTKDRSGKEITLPKEATKII SLVPSTTEVIEDLGKTDQLIAVDTQSSTMMTDLKKLPQMDMMAVDAEKLIALKPQIVYVN DINLASSESVWKQVEDAGITVVNIPTSTSIKAIKEDVQFIADSLSEHEKGQKLIKTMDQE IDEVAKIGKTIKKPKTVLFEVAALPDIYSFGNGTFLNEMIETIGAKNVLANEKGWLPVTE EAAIAAKPEVILTNVNYMKDPAKEILARKNWENVPAVQNKEVFEIDNMSSSLPNNHITKA LKQMAKAVYPEEYKDLKDE >gi|308151747|gb|GL476275.1| GENE 187 184472 - 185479 1045 335 aa, chain + ## HITS:1 COG:BS_yvrB KEGG:ns NR:ns ## COG: BS_yvrB COG0609 # Protein_GI_number: 16080370 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 18 330 29 346 353 201 40.0 2e-51 MSKKTCLILMLLISMSMLFLGIKIGSVQISLTDLLQILVKKTVSEDGILEGIIWNVRLPR VVMAYLVGAGLAVSGTVMQSLLGNPLASSYTLGVSAGASLGAALIMVTGVTASILGAFLL PLTGFIFGLATVFLVLLFTQTMDSQMSNQTVVLVGMIMTLFVGAILTLITALFQDYLKQL VFWQMGSFSGSNWQKIAIYCPILLVSSLFLWFDANALDVLGLGEEHAMLAGVEVKTAKLR IILLASLLAGSAVSFVGVIGFVDLIAPHIVRRYLGATHRWLIPGSAILGGTIMVIGDTIA RTILSPREIPIGAVTALIGAPFFLYIYFKKRGVAA >gi|308151747|gb|GL476275.1| GENE 188 185476 - 186243 220 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 89 29 2e-16 MIELKKTAVTLQQTPILKDISLVFPTGSKTCILGPNGCGKTTLLKTIAGLVPYSGSVLID GQEVHGQKRKELATKVAMMSQFTTVAFDYTVYETVLMGAYRQQAQRFLPIVSKQEKERVL YYLERTGLLPLKDKVVNQLSGGQQQRVFLAKLFVQDPEIILLDEPNNHLDIRYQQELIQQ LNEWSAQEGKTLIGVFHDIRLALTLSEKIVFMKQGKVAAQGDFQTLASKEFLQTIFETDI VSYFQKQHKVWETIQ >gi|308151747|gb|GL476275.1| GENE 189 186373 - 186828 585 151 aa, chain + ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 5 147 1 143 143 163 56.0 1e-40 MEVAMKRIILMGAIGCGKTTLCQALQGKELIYDKTQAVEFHTEMIDTPGEFILHRQYYNA LNVTAAEADVIGLVQSAVETQQVFSPGFGSIFPKEIIGILTKIDLAQDSQQLEIVRQQLK SAGATRIFEISSVEKIGLQELVDYLEEDEAE >gi|308151747|gb|GL476275.1| GENE 190 186825 - 187406 813 193 aa, chain + ## HITS:1 COG:lin1172 KEGG:ns NR:ns ## COG: lin1172 COG2096 # Protein_GI_number: 16800241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 190 1 188 188 206 55.0 2e-53 MKIYTKTGDKGMTKLVGSSTVAKDSDRVESYGTIDELNSWVGYIISQLPQENQGIKEELE ALQHLLFDAGTDLSTPIEAQRPFKLQKESVHWLEQRIDFYTAQSPDIDRFILPGGTSAAS MVHVARTIARRAERIIVRLNWTAKINEEVLIFTNRLSDYFYALARYLNVQAQRPDVFYER SEKVFHKIKEDGL >gi|308151747|gb|GL476275.1| GENE 191 187884 - 189014 1106 376 aa, chain + ## HITS:1 COG:lin1135 KEGG:ns NR:ns ## COG: lin1135 COG1454 # Protein_GI_number: 16800204 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 376 1 378 379 408 55.0 1e-113 MKTIHFPTELWVGEGALANLETLHDRRVFIVTDPFMVDSGFVNEVTKHLTKSEWQIFSDI IPDPPIDKIAAGIKQLAAFQGDTILALGGGSAIDAAKAMKFFGKRTLQTQIAEFIAVPTT SGTGSEVTNFSVITVAETGTKIPLVTDEIQPEIAILDTNLVMSVPPKITADTGMDVLTHV IEAYVSTEANPISDALCEKVVRLVFDNLEIAFNEGSNQQARENMHLASCMAGMAFNVTSL GLNHGIAHAAGARLHVPHGRMNAMLLPEVIAYNSGLANGKVTNEPTAKRYAQLANCLNDT QTTNARIGVQQFIRQIKQLRQKLNMPATFSDYGLPKEEVQAAIPKIAEGALMDGCTKTNP VQPTAAEVTKILNSIL >gi|308151747|gb|GL476275.1| GENE 192 189174 - 189521 373 115 aa, chain + ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 2 115 5 116 116 150 72.0 7e-37 MEEKQRMIQEYVPGKQVTLAHIIASPNKEIYTKLGLPDGTSNALGILTITPSEAAIIAVD IATKSGDIQIGFIDRFSGSVVISGDVSSVEAALQAVIEGLQQILNFSVTCKITRT >gi|308151747|gb|GL476275.1| GENE 193 189549 - 190121 731 190 aa, chain + ## HITS:1 COG:lin1136 KEGG:ns NR:ns ## COG: lin1136 COG3707 # Protein_GI_number: 16800205 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Listeria innocua # 1 190 4 193 193 241 69.0 8e-64 MDGRIVIVDDEPITRLDIRDIVIEAGYEVVGEAADGFEAIEVCKKTQPDLVLMDIQMPIL DGLKAGKKIVQDQLASSIVFLSAYSDVQNTDKAKKLGALGYLVKPLDEKSLIPTIEMSIE RGKQTQLLLSQIDKLSLKLEERKIIEKAKGILVKENHISEEEAYQMLRTLSMNKRARMSE IAELIVMDDE >gi|308151747|gb|GL476275.1| GENE 194 190122 - 191555 1241 477 aa, chain + ## HITS:1 COG:lin1137 KEGG:ns NR:ns ## COG: lin1137 COG3920 # Protein_GI_number: 16800206 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 472 3 479 485 408 48.0 1e-113 MKRLEQLCHQYTNLSESDIKELQRTARYLSSTTLYQSADVFIDVYKEMSQQALVVYHKPP AKTTSLYSGDVVGMEALLKNEPGVLRTMQTSLNSIGLLAVTQENRLIKQNIYPIRNEHRT IGVIIVEIAADEEIQADLQKEELNNCQLAKVAKSTSQVDALFIDQLAEAVLIFDAAGHLL ITNHNAQELYRKLGYRDNIIGMSYDNLSIDYTTFEYVLYQMKYKMSNQPIESKTTYLNYY FKVRKVWLASEEQLIMIIQDNTEFKEKEAEIISKSVAIREIHHRVKNNLQSVVSLLRIQE RRTQSPEAKKVLHESVNRIMAIAATHELLSKQVKDDVALRQTLEAVMYNFRHLFQGAQPI EMMMDVDPAIMVSSEQMVTISLVVNELLQNIFDHAFEPQTSGVVKLSGTLDNKMITITVT DNGKGYDVHQSNETSLGLMIVKSYVRDKLKGKITIESNKQGTKTCFYFEQNTSDVVH >gi|308151747|gb|GL476275.1| GENE 195 191646 - 193070 1588 474 aa, chain + ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 4 474 3 473 473 563 61.0 1e-160 MSKETLLTVGIDLGTSTTQLVLSELTVENFASAFTVPRISISDKKVIYRSDIIFTPLLNQ SEIDAEPIKAFVAEQYRQAGIHKQDIQMGAVIITGETARKSNANNVLRALSGYAGDFVVA TAGPDLESIIAGKGAGAQTYSETKRKPVVNLDIGGGTTNLAVFKDGEVIDTACFDIGGRL IKLDQQQKITYIAPKIQEIINKKGLTLHLGDQATEQNLLPIISELVAVLENSIGLGTQSP FYQLLVTNHPLRKGEELPIVTFSGGVADCLNTTSTNLFKYGDIGLLLGKYLRKSLIFSEK EVLESAETIRATVVGAGSHTAEISGSTIAYREQILPVKNIPILKLAQEDETLTVTELGQR IQEKLNWHRIEETPQIALAIRGMNNPTFADIQRYGQGIVEGLANLVAEQIPIIVMVDEDM AKALGHALSAHLPKDYPFICLDSVKVENGDYVDIGLPVAEGAVLPVIVKTLVFN >gi|308151747|gb|GL476275.1| GENE 196 193088 - 194452 1681 454 aa, chain + ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 753 79.0 0 MILKTKLFGKVYQFTSVKEVLAKANEEKSGDKLAGVAANSAEERVAAKVVLSELSLNDLF NNPVVDYDEDEVTRIIIDQVNMRIFESIKHWTVAELREFILSSETTDFDIKRISRGLTSE MIAAVCKLMSNMDLIVGAKKINIEKTANTTIGRPGTFSNRLQPNHPTDNVDGIMASVMEG LSYGAGDALIGLNPVDDSTESVKRILNKFEEFRSEWEIPTQTCVLAHVTTQMEAMRQGAP TGLVFQSIAGSEKGNTAFGLNAEILAEAQDLALHSGQAAGPNVMYFETGQGSELSSEANF GADQVTMEARCYGLAKKFDPYIVNTVVGFIGPEYLYDSKQVIRAGLEDHFMGKLTGISMG CDVCYTNHMKADQNDMENLAMLLATAGCTYIMGIPHGDDVMLNYQTTGFHETATIRETLG LRPIKEFEEWMEKMGLMENGKLTSRAGDASVFIK >gi|308151747|gb|GL476275.1| GENE 197 194470 - 195381 1266 303 aa, chain + ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 1 300 1 293 293 405 72.0 1e-113 MNEKELKEMIAGILTEMVADNQAVSTATVTAEEKPVTTHVTETTEIEEGLIPDITEVDLR KQLLLKNAVDPEALLKMKAFSPARLGVGRAGTRYMTSSTLRFRADHAAAQDAVFSDVSED LVKEMNFISTKTICNSKDEYLTRPDYGRQFDEENSEIIRKNTTPKAKIQMVVGDGLSSAA IEANIKEVLPAIKQGLNMYNLDFDNVVFVKYCRVPAMDKIGEITDADVVCLLVGERPGLV TAESMSAYIAYKPTVGMPEARRTVISNIHKGGTPAVEAGAYIAEIIKKMLDKKKSGIDLK EAE >gi|308151747|gb|GL476275.1| GENE 198 195395 - 196048 1050 217 aa, chain + ## HITS:1 COG:lin1141 KEGG:ns NR:ns ## COG: lin1141 COG4816 # Protein_GI_number: 16800210 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 217 1 217 217 288 76.0 5e-78 MKNDRLGANVLSMKVIPNVDPALAKELSLKPEHRSLGIVTSDCDDVTYVALDEATKDADV TVVYGKSMYAGAANASTKLAGEVIGIIAGPSPAEVNSGLSVITQVIEEEASFYSANEDDS IVYFAHVVSRTGSFLSEQANIPEGEAIAYLIAPPLEAMVGLDAAMKAADVQMGVFYGPPS ETNFGGALLTGSQSACKAACSAFEQVIQNIADNPLSY >gi|308151747|gb|GL476275.1| GENE 199 196062 - 196580 774 172 aa, chain + ## HITS:1 COG:lin1142 KEGG:ns NR:ns ## COG: lin1142 COG4577 # Protein_GI_number: 16800211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 169 4 165 165 114 45.0 6e-26 MKALGMVEVKGFLGAISVADAALKAADVTLLKAEIINGGLTTVELIGDVAAVQAAVEVGT EVAKELNCLIAHHVISRVDAQTEVILSDPEPKSAPEPMEQIEVIEEEIETPDLEEHTGTR QKLETQRVVDLRKQAYKMNLSSLKKSEIKFANKEALIQEIMAEIERSEDEWN >gi|308151747|gb|GL476275.1| GENE 200 196571 - 198049 1569 492 aa, chain + ## HITS:1 COG:lin1143 KEGG:ns NR:ns ## COG: lin1143 COG1012 # Protein_GI_number: 16800212 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 491 1 485 486 639 68.0 0 MELVDKDLRSIQETRNLIRKAKEAQQVLATFSQKQIDAIVQAVSEATFNQREKLAKMANE ETGFGIYEDKIIKNAFASKVVYDEMKDKATVGVIHDDAAKKVTEIAVPVGVIAGLIPSTN PTSTVIYKALISLKAANSIVFSPHPNALKSIIETVEIIQKAAIAAGAPEGCVSVIKTPTM QATSELMKNKETNLILATGGNAMVKAAYSSGTPAIGVGPGNGPAYIERSANVPHAVKQIM DSKTFDNGTICASEQSIIVETVNREAVKEELIKQGAYFLSPAEADKLAKFILRPNGTMNP QIVGRSVQHIASLVGLSIPKDRRLIVAEETHVGLKYPFSREKLAPIIAFYTVENWEAACA LSIEILKGEGAGHTMGIHTENKEVIREFGLRKPVSRLLVNTSGTLGGIGASTNLVPALTL GCGAVGGSSTSDNIGVENLFNLRRVAYGVRDLEEIRQEFGQTSTTSVATSCETTNQEELV NAVVAQVLARLN >gi|308151747|gb|GL476275.1| GENE 201 198173 - 198463 535 96 aa, chain + ## HITS:1 COG:lin1144 KEGG:ns NR:ns ## COG: lin1144 COG4577 # Protein_GI_number: 16800213 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 92 1 92 94 113 91.0 8e-26 MSSTNALGMIETRGLVGAVEAADAMVKAANVTLIGKEQVGGGLVTVMVRGDVGAVKAATD AGAAAAERVGELLSVHVIPRPHTEVDAILPHATTEL >gi|308151747|gb|GL476275.1| GENE 202 198531 - 199094 262 187 aa, chain + ## HITS:1 COG:no KEGG:EF1622 NR:ns ## KEGG: EF1622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 187 1 180 180 305 99.0 4e-82 MTVITEDMLRIKRLKKELEDGTDFVFPVGSFLTPAAKSYLREHRINSSFSSTNPLLSEVH SVKASSQKQEHLSKETIYEIRHLSHLLYLPFLTNEALSTEGWLYFEQQQQWLEKFILEQS LVMEPVILESKVTILTNQQRQWRYSSKEIQLQLDKIILQLKGESQLFGLFQSWATELIST MAEISRN >gi|308151747|gb|GL476275.1| GENE 203 199107 - 199733 780 208 aa, chain + ## HITS:1 COG:lin1146 KEGG:ns NR:ns ## COG: lin1146 COG4869 # Protein_GI_number: 16800215 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Listeria innocua # 4 208 6 208 213 270 65.0 2e-72 MDSMNEIVEEVVKRIQQQQQNTFEVEASGRHVHLSRQEIDALFGPGYQLTKVKDLSQPGQ FVCKERITVAGPKGLFQNVVILGPERSESQVEVSMTDTRILGINAPVRESGKTEGTPGVT LMNGSAVVTLSHGLIVAKRHIHMTPEDALKNKVSNSQIVQVKVEGTRPLIFDDVVVRISP RFATYMHIDYDEANACGLTKGARGYILK >gi|308151747|gb|GL476275.1| GENE 204 199748 - 200347 443 199 aa, chain + ## HITS:1 COG:no KEGG:EF1620 NR:ns ## KEGG: EF1620 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 360 99.0 2e-98 MNVSEMENLIQQITDQICQQLLSSSYSVALAEAKEAFPEEMFVRFPDVNWVTKEQKLARG LVVKRLTISQVNAIAHLQETDELVKNILAFLFEGKPVLVLTPIPSVTKNSRLKYRLKQTI QENVDMCQQFGLIFYHDSENYAVFQAACQKQLRSLAETKRTYITEKQLIRMTESGVSLSK NAYLTPLAKDYARKHQLLT >gi|308151747|gb|GL476275.1| GENE 205 200360 - 200623 485 87 aa, chain + ## HITS:1 COG:lin1148 KEGG:ns NR:ns ## COG: lin1148 COG4576 # Protein_GI_number: 16800217 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 85 1 86 89 95 59.0 3e-20 MLLGKVTGSLWSTRKDEKLNGWKFMMVDILNQEDEKQGFLIAADNAGAGVGDKVLISQGN AARISAEDPNVPIDAMIVGVIDSTEEE >gi|308151747|gb|GL476275.1| GENE 206 200636 - 201736 1747 366 aa, chain + ## HITS:1 COG:lin1150 KEGG:ns NR:ns ## COG: lin1150 COG3192 # Protein_GI_number: 16800219 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 360 1 360 373 445 79.0 1e-125 MSINEIIMYIMVLFMIIGGIDKCIGNKLGLGEQFEEGIMAMGSLALSMVGIITLAPVLAN LLSPIVVPVYELLGADPAMFATTLLANDMGGFALAQQLANDPQAGLFAGAILGAMMGPTL VFTIPVALGIIQKDDQQFLATGVLSGIITIPFGLLAGGLTAGMPLSLIIPNLIPIIIVAA LIILGLWLAPKGMIKGFQIFGQGVVIVAIFGLVVGAIQLLLGITVIPGIAPVTEGIEVVG GIALTLAGAFCLVAVITKVFNKPLMKLGKVLGMNEVAAAGMVATLANNIPMFQMLKDMDN RGKIINIAFAVSASFVLGDHLGFTAGVAKEMIFPMIVGKLVGGITAIFVAIFMANRMLGK PETEVK >gi|308151747|gb|GL476275.1| GENE 207 201749 - 202192 573 147 aa, chain + ## HITS:1 COG:lin1151 KEGG:ns NR:ns ## COG: lin1151 COG4766 # Protein_GI_number: 16800220 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 147 1 148 148 207 68.0 7e-54 MTELNREMIETLVRQIVTEKLMPTKQVDPSGIMSIKLPEIDVTEDDRLDTGNPADIVYTK DLFSLEESPRLGCGLMVMKDTTFDWTLEYDEIDYIISGQLDILIDGRKISATAGEIILIP KSSKIQFSVTGDARFVYVTYPADWQSQ >gi|308151747|gb|GL476275.1| GENE 208 202280 - 202708 596 142 aa, chain + ## HITS:1 COG:L158834 KEGG:ns NR:ns ## COG: L158834 COG1832 # Protein_GI_number: 15672137 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Lactococcus lactis # 3 136 4 138 145 161 58.0 4e-40 MTFENPSQNQIFDILKQAKNIAVVGLSNKPDRTSYKIAEILQQHGYRVLPVNPVLKGETV LGETVYGTLTEIPEKIDIVDVFRRSEFLPEVAAETLKTEAPVFWAQLGLENEEAANLLLN EGRQVIMNRCIKIELAKMADAE >gi|308151747|gb|GL476275.1| GENE 209 202913 - 204970 2605 685 aa, chain + ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 7 643 6 641 644 962 77.0 0 MAKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGN EINVTIQKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV GASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIF STTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDT LTPVVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEY ARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVG EQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY TIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPP LYKVSKGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEEDTSAPTGE SLLDAEKTKEAEQTDDTEISLFDIE >gi|308151747|gb|GL476275.1| GENE 210 204983 - 207445 2720 820 aa, chain + ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 817 4 823 823 967 60.0 0 MEKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDK GFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMR YTEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATE IPTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVI LRAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQ IVVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVI INRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAE AIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEGDFLL YAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYK ELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLL DVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQR GGVKRMLAQELTQLGRAKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSK NYPISERTSNGSFVIDEQKDGQVMEVHEMHSAVIEEEQTN >gi|308151747|gb|GL476275.1| GENE 211 207735 - 209981 2570 748 aa, chain + ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 2 748 3 743 743 953 61.0 0 MKQWEGFKGDKWRTSVDTRDFIQNNYTEYKGDDSFLEPIAPSTDKLWTKLQELFEIQHEK NGVYDMDSDIPATITSHEPGYLIKEEEKIVGLQTDVPLKQAFMPFGGIKMANNALVSNGY ETDEEMTKIFTEYRKTHNQGVFDAYTAEMRLARKNKIITGLPDAYGRGRIIGDYRRIALY GIDYLMEQKKKDHDNTGNKEMTDDVIRLREEISEQYRALNDLKQMAASYGFDISRPAANA QEAIQWLYFGYLGAIKSQNGAAMSIGRISAFLDIYIQRDLEAGLITEFEAQEMIDHLIMK LRMVKFARTPEYNQLFSGYPIWATLSIAGMGIDGRSLVTKNDFRILHTLTNMGPSPEPNL TVLYSSHLPEGFRTYAAKIAKESSSIQFENDDLLRENWGSDDCAIACCVSATVMGKDMQF FGARANLAKAVLYAINGGVDEKTKMQVAPKYRPMTGDKLDYHEFMERYKDILDWLAELYV NTLNIIHYMHDKYAYEAPQLALMDTDLQRTFATGIAGISHATDSIMAIKHGEVEVIRDED GMAIDYVPTKEFPTYGNDNEEADAMANWILDYFMTQIKRQHTYRNSKPTTSLLTITSNVV YGKATGNTPDGRRAGKPLAPGANPSYQDGKFLGEKNGLLASLNSTARLEYTIALDGISNT QTINPNGLGKDDDTRINNLRNVLDGYFDKGGYHLNVNVFTNELLLDAQAHPEKYPNLTIR VSGYAVKFRDLTPEQQADVISRTSHDRL >gi|308151747|gb|GL476275.1| GENE 212 210058 - 210822 695 254 aa, chain + ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 5 254 11 261 264 355 64.0 3e-98 MTTPVTGRIHSTENFGTVDGPGVRFIVFTQGCRMRCQFCHNPDTWKIGSGGRVVTTDEVL EEALRFRSYWGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCGKPFTREEPFI SQFDELMKYTDLLLFDIKHIDNEQHKLLTTQSNDNILEMATYLSEIDKPVWIRHVLVPQR SDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVENAK KLLHVEDYQGYLAR >gi|308151747|gb|GL476275.1| GENE 213 210918 - 211844 1324 308 aa, chain + ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 308 1 310 311 377 65.0 1e-104 MSKILVFGHQNPDTDAIGAAISFAYLQKELGKETEAVALGTPSEETQYALDYFNIEAPRV VTEAASETNQVMLVDHNEFQQSISDIAEVNILAVVDHHRIANFETADPLYYRAEPVGCTS TIIYKMFKENNVTIPAQIAGMMVSAIISDTLLFKSPTCTQEDIDAAHALGDIAEINLEGY GLDLLKAGTNLSDKSAEVLLDLDAKSFPMNGKTVRVAQVNTVDLAEVLDRQAELEAAMAA ENAANNYDLFVLIITNILDSDSELLAIGAEQAKIEAAFNVTLVNNRAFLPGVVSRKKQVV PQLTEVFN >gi|308151747|gb|GL476275.1| GENE 214 211916 - 212800 789 294 aa, chain + ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 528 98.0 1e-148 MNDLAIYYHSPQQTKQYNHLLNQSLFFPLVTFMYEHREERIILRQLKAAFATEAKLEQFL SEMIDCQLIIRENRQYRLNFPIYTAAEVASLTLAEDELPKFKGTVTEQLFWLAESFWPQV FPEEEDYFFGVSGGPSFYQKQRLASAQLSMITLEKEKTEVPTMPRYFDYLGKEQPLPEAF SALYDLLGDVNPEYYLSQARRVIKQALRGRKVSTVPNIFQESLHLTQVITIDQDHLKLLL PVATEQAEPLEAQSDILAFYYEKIANRSAIERLVFMQQLIEQLGTNSLSYLRIN >gi|308151747|gb|GL476275.1| GENE 215 212859 - 213410 587 183 aa, chain - ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 177 11 179 200 174 52.0 7e-44 MVVDLKMLAMIFIINFAYITLNTIRFMLTMKGYRVIAPLVSMAEITIYVLGLSMVLNRLD NPLNLLVYALGYAVGISVGIKIEDYLALGYIMVSVILPSTTEQFHLPETLREHGYGVTQS VAYGREGERMVLEILSPRKNERTLYKLINQLEPRAFIISYEPKFISGGFWTKKVRKRNDA ISH >gi|308151747|gb|GL476275.1| GENE 216 213591 - 215051 1379 486 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 486 18 487 487 565 56.0 1e-161 MKIFVWILLFLLVINVIAALITVFRKPRSISSVLAWMMTLIFLPGIGFIIYLFCGRGIDG QEVFKLSDDEKQMVQRIKEKVDIDNKKAGRDKRYDLLYDAKVLNRYFRNMDASPLAKRNS LQLFTDGQEKFQALFEDIRAAKETVHVEYYAFFNDTIGNQFLDVLIEKLHEGVEVYLIYD PWGSPGANKKFFARYVDAGGKVAPFITSRDMIRKTRLNYHLHRKIVVIDGKIGWTGGFNV GDQYLNVTEKFGYWRDTHIRLVGTAVFSLQEIFIMDWNASVKYPEERMTYHEKYFKLPED HEVEQLSLQVVSDGPDSEEEILKSGFVRMIFSAEKSVWIQTPYLIPDDSMINALLVAVRS GVDVRIMIPCMPDHPFIYRATQYYANYLHKRGIKIYIYDSGFIHAKTMVIDDELAMVGTT NQDIRSYSLNFEVSTFIYNPDIAWMLAQVFEEDIEKSVLLTDEIIKKQGYWLRFKQNFSR LLSPVL >gi|308151747|gb|GL476275.1| GENE 217 215334 - 217214 1809 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 98 472 2 367 368 298 45.0 2e-80 MDYQAIAKEILKDVGGKDNIVDVTHCYTRLRFVLKDTKQANKEVLLQTEGVISVVESGGQ YQVVLGNKVAHVYNALEPLLAQQLTTKTSTKEKNSLGNRILNTVAAIFTPVVPAIAASGM LKGILAIAVMVANNFYQVDLKPLNTYIILSAASDALFYFMPVILGYSAAKVFKTNEYIAM VIGATLCYPTIVSLMTEESAVTLFGLHVTKANYVSTVIPIILAIFMLAYVQRFLEKVIPE VLKIIMVPTLSLLLMIPATLLLFGPIGIYLGDGVNWLYYYIMNLSPILLGGFIGGIWCVL VIFGTHRGLVPIGINDVARTGRQNLLAFAGAANFSQAGAAFGVFVRTKNKDLKAVAASAT VTALFGITEPAIYGANLRLKKPMIYAVASGAAGGALMGWGGSYGTAFANQGLLTIPVYAE AGTKAFICYLLGCGIAFFGAFLLTIFLGFNDLPLDESRQEPVLKTEATTVKEKQRIQAPV QGQLVSLDQINDEVFASQQMGKTLAIYPTEEQIVSPGNGQVTALYPTHHAIGLKLDNGAE ILLHIGINTVELKGRGFETFVKVGERVRLGQKLLSFDKQIIQAAGYDPTVLVIVTNTAEM SVIETTKQTEITLQTNLFFMQVKEQN >gi|308151747|gb|GL476275.1| GENE 218 217214 - 218623 1455 469 aa, chain + ## HITS:1 COG:CAP0010 KEGG:ns NR:ns ## COG: CAP0010 COG2723 # Protein_GI_number: 15004715 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 2 465 6 466 469 417 45.0 1e-116 MVKQFKNDFLWGASSSAFQIEGAWNEDGKGLTVADYNSFKKSAVQADTKVASDFYHRFKE DIALMKELGLKTYRFSLSWARIIPTGDGEINQSGIDFYNTVIDTLLENDILPFVTLYHFD LPFVLVEKYNGWADRRCVSAFQRYAQVCYQAFGDRVKNWQVTNEQNLMIRVDERMNMYDV APENAEKIRVQMDYHMFVAHALATNDCHQLVVGGKVGPSVSSTMTYPSSNKPEDVWAARM NDNFKTNYALEMYCFGEYPGYYQEYLTKCGIYPETQPEDQAILKAAKPDFIALNYYRTLV ASYLPTDEQHPLGTKEKDIDFDLYGYFKIEKNQHLKTSKYGAQIDPTGLRLVLNDYYRQY RLPLIITENGLGTPDHLTEDGKIHDDYRIAYLHDHIAACHAAISDGVELFGYCPWSVMDI LSSHQGFKKRYGFIYVNREDHELKDLRRIKKDSFYWYQSVIKNNGLPEE >gi|308151747|gb|GL476275.1| GENE 219 218733 - 218894 216 53 aa, chain + ## HITS:1 COG:no KEGG:EF1605 NR:ns ## KEGG: EF1605 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 76 98.0 4e-13 MNNYDLWKWAAGKRTEKDKNETYSAKNWWYVLLMLGVFVGIMLLYYLISVLWN >gi|308151747|gb|GL476275.1| GENE 220 218954 - 219934 1070 326 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 315 321 335 54.0 5e-92 MVVKLTDVAKLAGVSPTTVSRVINNYGYLSQKTIDKVHQAMEELNYQPNGLARSLQGKST QLIGLVFPSVSHPFFGELIETLERKLFVQGYKVILCDSEKDPEKERAYLRMLAANKVDGV ITGSHNLAINEYENVSLPIVSFDRFLAPGIPIVSSQNFQGGQKATEALFASGAQKIAIIT GANNTGAPSDYRLAGYKQTMEKYGAEKTILQIDNGTSTTLKNLEIERLLQNKTVDGIFCT DDLTAITVMNIAQKLKISIPEELKVIGYDGTKLIKRIAPQLSTIVQPIDEMCDVMIDLLL RRMKDPDVALEENYPIPIQLSLSESC >gi|308151747|gb|GL476275.1| GENE 221 219953 - 221425 1118 490 aa, chain - ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 7 486 2 478 484 454 46.0 1e-127 MSSIMNQWTDELRYAPYSSWTSAHLENLTSIIAQSSWRFKYHIQPQTGLLNDPNGFSYFN NQWHLFYQAFPFGSVHGLKSWAHLTSSDLIHWDYEGIALYPDSEYDSHGVYSGSALPIDN QLCLFYTGNVRDQTWQRFAYQNIAWLNSLGAITKESTPFLPIDPNYSSHFRDPMVFPYQE GLVLLIGASDLNGQGKIVVYFSKDRNVHNFHQLGELTFTDQELGYMVECPNLVFIDGQPV LLFCPQGLSPSVKSYQNIYPNMYTLAETFDLENLSLVQAGPFENLDEGFDVYATQAFNAP DGRALAVSWIGLPEITYPSDVEGWANGLSLVKELTIHNGKLFQYPVSETEMLRQSATTLS NGCHFLSTASFELEVDIPKNEIAFIRLLANETGSKGLLITIDTIHGKITLDRTFAGQPFA EKYGTIRETKIRKNKSVQLTIFVDCSVAEIYVNKGEKTMTGRFFPDKAQQYLHLSQTAKA CFYELENTNN >gi|308151747|gb|GL476275.1| GENE 222 221656 - 223329 1508 557 aa, chain + ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 510 1 507 553 432 43.0 1e-121 MNRNWWQKEVAYQIYPRSFSDSNNDGIGDLQGIIQKMDYLENLGITLIWLSPMYPSPMAD NGYDISDYYGISSDFGTMADFDELIEEAKKRNIKVILDLVVNHTSDEHAWFQDVLKNPQS RFRDFYIIKEGREAPTNWRSNFGGSVWEKLPGEDAYYFHAFHKKQPDLNWENPELRKEIY QMIRFWLNKGIAGFRVDAINFIKKDLTWTNLPADGADQLAKVTKASRNMPGMSDFLNELK EKAFAGFDIVTVAEAAGVNYPNLSEFIGETGYFDMIFDFKWADLDVKSGSEWFYRIDWSW NDLRTLIFKQQEAMQKAGWSANFIENHDQPRATTKYLKEQAQQPNAVKTFGAMYFFLRGT PFIYQGQELGMTNFERGSIDEFDDISSIDQYYRAIKEGFTPKEALSLVNLRSRDNARTPF PWNDSMYGGFSSVKPWLGMVDNYKEINAEAEIKNSQSIFHFYKRMIAFRQKSPYTDILLY GTFEGLSNLPDNVIAYKRKLNEKTIYAFFNFGEAVPIPHYLVNGTVIFDTQSEEREQLVQ QGTLLKSYQGLLITINE >gi|308151747|gb|GL476275.1| GENE 223 223346 - 225274 1913 642 aa, chain + ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 103 456 13 360 385 239 38.0 1e-62 MAENYQQAAKDIIQLIGMDNIISVTHCQTRLRFILKDHEQVDGKQLEKIDLVKGVFYNGG QYQVILGTGIVTKVYDEIEKLGINVVSKAEQTAILKNNETGMRKTMRILSEIFIPIVPVI AATGLFLGLKGVIFNDTFLQLFGASVANIPESFQQIVSVITDTVFAFLPALIVWSTFKAF NATPVIGIVIGLMMVSPILPNAYAVATPDSGVKAIMAFGFIPVVGAQGSVLSAIAAGIIG AKIELFFRKKMPNILDQIFTPFMTMLITFLIMILGIGPILHTVELGMVDVVQWLIGLPLG LGGFVIGASYPLMVLIGIHHTLTMVETSLLANTGFNALITICAMYGFANVGSCLAFAKKA QDSKVKSTAIGSMLSQLFGVSEPVLFGLLIRWNLKPLLCVLFTSGLGGAILAIFHIQSNS YGLAVIPSFLMYIYSAHQLVIYLLVALLSVGVCYALTSLFAIPQEVLISDKVIEEEEREV FEMQHNTLDEQLFSPVTGYAMNLTAVNDPVFSSEMMGKGLAIMPTANKVYAPADGLLNLV AETGHAYGIQTDAGAEVLIHIGIDTVTLGQEVFQTQVTQGHRVKKGDLLGTFDRKAIKEA GLDSTVMVIITNTSSYLSVEPMMSDHNEITPEQIILNLNTPN >gi|308151747|gb|GL476275.1| GENE 224 225439 - 225501 123 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGTSTYGNVPHV >gi|308151747|gb|GL476275.1| GENE 225 225583 - 226428 686 281 aa, chain + ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 491 100.0 1e-137 MKVAGDKIKQARKLKKITQSELANGICTQATISNIENRNLCDSLDIFSSICLRLDLEVEE CMMISEEKKIENLLNKVEDLSLRLFHLEAYNLLQEVPEGLILSNNELTTKLLYYKGITCL LGKKDKAEALFYLYRGAEIDRKVNIYNILSLNALGTLYELEKDMRKAQVYYEKSLQELEQ FKLECSLERCRIYYNSAKFYSEMKDYQKSVILSEKGIQICRDKHSIYLLDYLLYEKAFNK QMLGEDTADDYRQAYYFTQFFGNTEVLQYIEKDMKAFNISY >gi|308151747|gb|GL476275.1| GENE 226 226561 - 227994 1141 477 aa, chain + ## HITS:1 COG:lin0597 KEGG:ns NR:ns ## COG: lin0597 COG0415 # Protein_GI_number: 16799672 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Listeria innocua # 1 466 1 461 467 527 56.0 1e-149 MKRVMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQESANHNAFFASLASFK ERIDQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQ SFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACLFPEE EAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTG ELSIRTIWQELASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEVIQEKFRYIQWTND PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKM LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY IHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEIHQEMNNPRFK >gi|308151747|gb|GL476275.1| GENE 227 228207 - 229643 1381 478 aa, chain - ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 474 1 475 483 660 67.0 0 MKNQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGA HGVFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEG NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMS DRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFH IEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRN PENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAP VNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQDHFTQA NALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQA >gi|308151747|gb|GL476275.1| GENE 228 229946 - 230956 1154 336 aa, chain - ## HITS:1 COG:no KEGG:EF1596 NR:ns ## KEGG: EF1596 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 523 98.0 1e-147 MLKRKVGIITGVFCSALLLTGCGKSAKDEFIQGIGNQNAQESGVWDFSMSISDMKFSQED SAQTNPMIGMLITQIKDASLSGKIQVDAKKEKAFNLEMKLKAMGMDVPISLVGSLDNEGK EPKLYLATDMMEYIVAVADSMTDGAIDSSQLDTEKLKGKYIDLLAMNEESTKEWQDTIKE YQESEKERKQSAKEYKEFLEGLDKDTFEKKGDTITHTFTKKELQKLIKITTETSEKGKEQ DPFEKIKDVSAKVSVNTKENKTNMLINVKPQQDKNVDMGLESLSSKISITQKAKKATISM PKKENILSEQEVEKIFSDSTSMTGLSTEDTTVAINQ >gi|308151747|gb|GL476275.1| GENE 229 231096 - 231530 494 144 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 141 1 142 151 87 38.0 9e-18 MNRNFEVELTTLCMIRNQKNEILVQERQKKDWPGWTFPGGHVEKNEGMETAMVRELLEET GLVLKPQLVGVAEWLNDCSGARELATLFIAETADELDELPEETEQPLFWVTEKELREGPL AGSLAELFPVFFGEKQFYFKNNTA >gi|308151747|gb|GL476275.1| GENE 230 231619 - 233397 232 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 336 574 6 251 329 94 28 6e-18 MARNTFDVDETLEKEFNWSHYKRLGAYIKPYKKAVFKTLFVIILANLASMLGPYFTKIAI DQVIPQKNLSLLLILGAIFLFSLVIIGWCMRYRIYAITEIGQDILKDMRFSIFEHLQKLP FSYFDSRPHGKILIRVVNYINTLSDLLSNGLINLISDLFNVIITLIFMLFIDVKLTLYSL LLLPVLFVMVLFIQGKQRKAYQELSNKQSNLNAYIHESISGIKITQSFAREDENFQIFNE VSEEYRQSFMKAVRVQYLLWPAVQNISVITTCFIYFVGIRQLGVSVTTGTLIAFIGYINN FWNPVINIGNFYNSLITATAYLERIFETMDVVPEIQDAPHAIELPPIKGTVDFQHVYFRY EEGKNILTDVSFHIEPGQTIALVGPTGAGKTTIINLLSRFYDVNEGAVKIDGYDVRDVTL RSLRKQMGVMLQDTFIFSGTIIENIRYGNLAATEEEVIQAAKIVRAHDFIKDLKDGYETV VEERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTKTEELLQEGLQQLLKGRTSF IIAHRLSTIKNSDKIFYIDGGRIVEEGSHDQLMAKHALYHHLYQSQYDLLKS >gi|308151747|gb|GL476275.1| GENE 231 233390 - 235138 225 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 295 557 247 507 563 91 27 4e-17 MNSFEWIWQYAKKNKNKLLLAVIFVVINAILIVIIPLLSGRIVDQVINQGKIEELVPILG IMIGVTVIRTVVRYSYQVLFESVGQSALFDLRKDMYIKLQELDFDFFNHTRVGDIMARMT GDTDAIRHFVSWVTYNLLECILWFIAAVIVMGTINWQLMLALILITPLIFLLTQKMSKES HPVFFEIRESFSRLNSMVEENIGGNRVVKAFSQEPYEIEKFNKHNEDYKKWNMASADVSK KYLPWLDGFAGSLNVIALVLGGLFVIQGRMTIGDLVAFNGFLWMLNMPMRMSGWLINDVQ RFTASSIKIRQLLATKPKIPIAREKEAEPIQGYVTFDHVSFHFSDDPETPILSDVSFSAK PGETIGILGETGSGKTTLVNLIARFYDPTKGTVYIDGKDAKSYSVRKLRENISMVMQDVF LFSNTIEDNIAFGNTLANLEQVQMMAEIADAHSFISRMPEGYATIVGERGVGLSGGQKQR ISLARALTKDPAILILDDTTSAVDMETESKIQKELGRLTEKKTTFIIAHRISSVREANLI LMMEKGRVVESGTHSELVEQKGKYFDVYQKQLGLTKEGESRG >gi|308151747|gb|GL476275.1| GENE 232 235275 - 236093 836 272 aa, chain + ## HITS:1 COG:lin0157 KEGG:ns NR:ns ## COG: lin0157 COG2207 # Protein_GI_number: 16799234 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 5 271 5 271 277 221 43.0 2e-57 MNYTNSRTFNPEILYAFDPWNEETHPYNCHHHEFLEISILLEGESEYIVQGQQYHATAGT VFLFNPRTEHGEQQKAGTYSHQLHIGISNLYLEGLARNVFPNKSALLDLSHLHGAFLEKA WQIVHELNHQEVESALQIKALVIELLVYILRSLAVDQENKIETRLSKTEKRKRNLVNHTI YYLETHHDEEITLEQLAEMLYVTPTYLSKTFKAATGVGPINYLIQIRLNHAKELLKNDSL SVKEVAKTVGYEDAYHFSKLFKKYYGKSPSQF >gi|308151747|gb|GL476275.1| GENE 233 236148 - 236675 539 175 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 171 1 171 172 154 45.0 9e-38 MSVFIRECTVADVPELEAICQETFADTYGDGENEEDLQAHYERKFSPAVLESEILHKDSQ YFFAFYNNELAGYVKLNHGDAQITYQHPQALQVERIYIRKSFKRLGLGKHLITKAIELAE EAEKETVWLGVWEHNHPAQKFYQSLGFVKTDEHDFYMGNERHTDYTMTKQLKEST >gi|308151747|gb|GL476275.1| GENE 234 237033 - 237641 681 202 aa, chain + ## HITS:1 COG:L167097 KEGG:ns NR:ns ## COG: L167097 COG1051 # Protein_GI_number: 15672146 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Lactococcus lactis # 1 192 1 188 200 139 44.0 3e-33 MDYLNTYKRLLALADAGLFYGKDAFDQERYQELRELTLQLISATGHEATVLPDLEKILTK EEGYPTPKVDVRGLIKKENRFLLVEDLRTKEWSLPGGYAEIGCSPKENIEKEVLEETGLV VTAKELLAVYDTDKRKDIPQLFQYYKMIFSCEILENHPFEKNIETSNCAYFSLDNLPPLS IKRTTKEQLMALMNQTTGALSD >gi|308151747|gb|GL476275.1| GENE 235 237692 - 239032 1791 446 aa, chain - ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 442 3 454 456 367 43.0 1e-101 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKSAADLFY SNPEELASLGATVKMEHNVEEINVDDKTVTAKNLQTGATETVSYDKLVMTTGSWPIIPPI PGIDAENILLCKNYSQANVIIEKAKDAKRVVVVGGGYIGIELVEAFVESGKQVTLVDGLD RILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQEFEADMVIM CVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQTKNYIPLAT NAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLDVEATVFED NYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKMTVEDLAIS DFFFQPHFDRPWNYLNLLAQAALENM >gi|308151747|gb|GL476275.1| GENE 236 239330 - 239773 598 147 aa, chain - ## HITS:1 COG:lin1791 KEGG:ns NR:ns ## COG: lin1791 COG0735 # Protein_GI_number: 16800859 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 1 146 3 148 148 207 63.0 4e-54 MDNVLVKNALAELKEANIRITPQRYAILEYLIENHTHPTADEIYRALEDHFPNMSVATVY NNLRLFTEIGFVQEMSYGDASSRFDFSSKKHYHVICQKCGKIVDFHYPGLEDVEMAASKL TGFEINEHRLELYGLCPDCQQAQQENV >gi|308151747|gb|GL476275.1| GENE 237 239912 - 240844 1052 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 308 6 306 308 409 67 1e-113 MTKGYVKSVTELIGQSPVVKLKRMVPEGAADVFVKLEFFNPGGSVKDRIALSMIQQAEAD GRLKPGQTIIEPTSGNTGIGLAMVGAALGYPVKIVMPDTMSIERRKLMQAYGADLLLTPG AEGMKGAIAKATALAEEHGYFMPLQFNNPANPMVHEQKTGKEIVDVFGKRGLDAFVSGVG TGGTVTGVGHELKRIFPDIEIVAVEPTESPVLEGGEPGPHKIQGIGAGFVPDVLDTTVYQ KVAAVSSEDALETARLMGPKEGILVGISAGAAIKAAIDLAVELGAGKRVLALVPDNGERY LSTALYEFPE >gi|308151747|gb|GL476275.1| GENE 238 241073 - 241933 1056 286 aa, chain - ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 52 205 154 308 340 147 60.0 2e-35 MSEQLTRSSKHIQKALKKQKAYKRATAVAGTSMILAPVVGAAVPAQAESSQQAFINEIGN SAAAVANSNDMYASVMIAQALLESSYGSSGLASAPNYNLFGVKGSYNGQSVYMPTKEYLD GQWVTVTAAFRSYNSYAESFQDHANVIRSTAFGDTYHYSGVWKSNTSSYRDATAALAGSY ATDPGYAEKLNWLIEAYNLTQYDWGAPVAQTTSYSDTTGTVDTTIDTAASATATAETVAS QSYTVANGDTLWDIAARFGTTVDNLMSLNGLTLDSVLSVGQTIQIG >gi|308151747|gb|GL476275.1| GENE 239 242385 - 243380 833 331 aa, chain + ## HITS:1 COG:CAC3482 KEGG:ns NR:ns ## COG: CAC3482 COG0477 # Protein_GI_number: 15896719 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 322 75 390 394 231 40.0 1e-60 MAPIGDVVDRRKLIIRVAALSSLSLSAAFFAPSFLLFALSSFFIGLLSIVAQIIIPYAAV MAGPANRGKVTGRMLGGLLTGILLSRTISGFIASAASWRTVYLIAVIFVLALVVLLQLKL PKTVIHTQTSNRLTYLGSLKSLPKLIKSQPLLREATVNGFFMFATFSIFWSTLIFFVSSP AYYWGPKEVGILAIFGLSGAFVAPIIGRLSDYYPERKIVLIGLLMQFGSFILLFLGGTHV VLLILAIIVLDIGTQFGQVANQTRVQNLGEEASNRNNTVFMFFYFIGGSLGSLIGTLMWQ NYGWSGVTLTGIGFQLFALFFHFMLFAPKKK >gi|308151747|gb|GL476275.1| GENE 240 243432 - 245426 2713 664 aa, chain - ## HITS:1 COG:SPy1676 KEGG:ns NR:ns ## COG: SPy1676 COG0021 # Protein_GI_number: 15675539 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Streptococcus pyogenes M1 GAS # 2 664 53 711 711 927 70.0 0 MFDKTDQLGVNTIRTLSIEAVQKANSGHPGLPMGAAPMAYALWTKHLKVNPTTSRNWVDR DRFVLSAGHGSAMLYSLLHLSGYNVTIDDLKNFRQWDSKTPGHPEVHHTDGVEATTGPLG QGIAMAVGMAMAEAHLAATYNRDSFPIMDHYTYAICGDGDLMEGVSQEASSMAGHMKLGK LIVLYDSNDISLDGPTSKAFTENVGARYEAYGWQHILVKDGNDLDEIEAAIEAAKAETDK PTLIEVKTVIGYGAPKEGTSSVHGAPIGEEGITAAKAVYGWEYPDFTVPEEVAARFKETM IDEGQKAEAAWNEMFKNYEHAHPELAKQFKEAFANQLPEGWEQELPKYELGTSAASRVTS KETIQAISKVVPSFWGGSADLSASNNTMVAAEKDFEPGQYEGRNIWFGVREFAMAAAMNG IQLHGGSHVYGGTFFVFTDYLRPAIRLAALQKVPVTYVLTHDSVAVGEDGPTHEPIEQLA SVRCIPNVHVIRPADGNETVAAWKIAMTSTETPTILVLSRQNLPVLEGTLEHASDSVQKG AYVLSPQKGEQPAGILIATGSEVNLAVEAQAKLAEEGIDVSVVSMPSFDLFEKQSAEYKE SVLPKAVTKRVAIEAAASFGWERYVGTEGKTITIDHFGASAPGGLVLEKFGFTPENVVNT YKSL >gi|308151747|gb|GL476275.1| GENE 241 245498 - 245740 405 80 aa, chain - ## HITS:1 COG:SP1473 KEGG:ns NR:ns ## COG: SP1473 COG4224 # Protein_GI_number: 15901323 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 79 1 78 85 77 65.0 5e-15 MLSKEKIARINELANKAKVEELSAKEKVEQQELRKEYLEAFRGGMRHHIEGMKVVDQEGT DVTPEKLKQIQREKGLHNRK >gi|308151747|gb|GL476275.1| GENE 242 245891 - 246511 716 206 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 4 204 2 202 204 246 62.0 3e-65 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD PTKPRAIELTPEGLEKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLRTEENALF MLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKRFFREVDHIRLQPE NDALAPILLDNVTILGKVVGLYRNHI >gi|308151747|gb|GL476275.1| GENE 243 246525 - 247694 1272 389 aa, chain - ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 4 371 13 374 380 400 53.0 1e-111 MPTLKEKIIQESQRLGIDKIGFTHAEPFIELEDSLHEQRERGYNSGFEHQNVEERIYPEK TFEHPKSIISIALAYPTKAQEKMPRDEKRGQFARASWGIDYHHILQDRLQKLIAFIEEQA ATEAEKEHWRFRPQVDTGEYIDTAVAQRAGLGFIGKNGLLITEEFGSFVYLGEVTTNIQF EPDEPVPNGCGDCTRCITGCPTGALLGDGRMNAQKCLSYQTQTKGMMPEEYRKKMRNVIY GCDICQLVCPYNKGKDFHFHEEMEPKIEEVYPKLAPLLTISNKEFKQQFGHLAGSWRGKK PLQRNALIALANLGGREAIPQIILCLNDQRPVIRGTATWSLGQLAKREPEQSLEALNYLL SVETEEEVIEEAQKAIHLLTSKKGSRSTE >gi|308151747|gb|GL476275.1| GENE 244 247718 - 248212 609 164 aa, chain - ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 1 164 1 162 163 147 45.0 7e-36 MLAAIWAQDEQGVIGKEGKLPWHLPNDLKFFKEKTIHNTLVLGRATFEGMGCRPLPNRTT IVLTSNPDYRAEGVLVMHSVEEILAYADNYEGVTVIGGGSVVFKELIPACDVLYRTMIHE TFEGDTFFPEIDWSVWEKVATVPGVVDEKNLYAHDYETYHRNDK >gi|308151747|gb|GL476275.1| GENE 245 248230 - 249177 1117 315 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 5 315 4 314 314 478 71.0 1e-135 MEEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSEL LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE HQKFCDTILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLI VSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIA HETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV EGYDPHPTIKAPIAV >gi|308151747|gb|GL476275.1| GENE 246 249195 - 251084 2267 629 aa, chain - ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 638 54.0 0 MKELKVTDLTKTYGEKTLFDHLSFLIHEKDRIGLIGINGTGKTSLLNIIAGVDSGDGDLA AIQQPSDYQIGYLSQNQTFDENITIAEAVFQGDSPIIKAVKNYELALAALSENGLDEGVQ RRYTQAEEAMNKQDAWTADTNAKIILQKLGIPTLEKKIGELSGGQLKRVSLAQVLIEAPD LLLLDEPTNHLDYETIEWLENFLNNYRGAVLMVTHDRYFLDRVTNRIFELSFGKLYEYKG NYETYVMEKAERERVAVEQEEKRKRLFKQELAWMRAGVQARGTKQQARIDRFQDLKENLH QVQTNGTLEADFATQRLGKKVLEIKEGNYAIDHKQLLKDFNLLIQANDRIGITGKNGAGK STLLNILAGRIPLESGLYSIGETVRIGYYTQQNEEMDPNQRMIAYLQEAAEEVKCSDGSS VGVAEMLERFLFPRFMHGTLIGKLSGGEKRRLYLLKLLISQPNVLLLDEPTNDLDIDTLT ILEDYIQMFKGAVIAVSHDRYFLDKTMDKLLVFQGNGQILSFYGTMSEYLANQKEQEKVK EKPLNKPVKEASTEKKEKTKLTYMEQKEWATIEEDITQLETKLETLTEEMNHQGDDFVRL QELQEAVTATEQLLEEKMNRWEYLSEYAD >gi|308151747|gb|GL476275.1| GENE 247 251048 - 251143 76 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFWLNLLLLILSPTLPTPSILVLLIVSKIGL >gi|308151747|gb|GL476275.1| GENE 248 251195 - 253249 2437 684 aa, chain - ## HITS:1 COG:L187315 KEGG:ns NR:ns ## COG: L187315 COG0025 # Protein_GI_number: 15672365 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Lactococcus lactis # 1 666 2 662 680 437 39.0 1e-122 MEFTFLIIVFALSITFSNIFNRIVPVIPLPIVQIIVGVLIGLTKMGQEIEFEPEVFLVMI IAPLLFREGELINLKAMMKNFGMILFLAFFGVLITLVGVGWTLHMILPTLPLAACFAFGA ALGPTDAVAVGSLSGRIDIPERSMNILSGEGLINDASGVTAFQFALAALLTGSFSPVEAA GTLVISSIGGAVVGIVLVLLKQQIVHLLETAVAKDVTGYLLIELLLPFIAYLISELIGVS GIIAAVIAGIMQASSLKKVSLFEAELSNVGESIWSMIEFTLNALVFLFLGIELSQVFSPI WIDQQYSNWFLLMVVLIISAVVFLIRFLAIFSVYTLQHGLKKVKNAMNEMLILTFGGVKG TVSLATIFILPTAINGEHFKERPLLLFITACVILVTLIGGILVLPFLTDSETEVENEESV EIDLLRDVIDVLKQQNEENPRGEMNAVIENYQDRLKELYTEQLSAERKQEVQELRTLIVS IERDGLEESLKQGEISVRSYRMYQRLITRMQRSIAKQLLSIVGFWLLFARQIISILLHPK LFFNRGEASEEEKELRNEELENIRQVFLRNSQVILKSLDNLRGVYDDDLIDFFIDGRLDL AHKFEKGEFIDSYIVHTETDYVKDLLLGFQEERRMIDHYEQSERISIIEANELRKNVNLL ESYSISGEVNNVPLKRFVKNFNKE >gi|308151747|gb|GL476275.1| GENE 249 253285 - 253551 327 88 aa, chain - ## HITS:1 COG:no KEGG:EF1573 NR:ns ## KEGG: EF1573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 23 110 110 97 98.0 2e-19 MSEEFEKCVADLKKKYQAIPEEKRQHFAERMQKKNFLRYKKIELIKGELLRLEARRAQLE LCERSSELEEVEKKIILKKKKLLKCFDR >gi|308151747|gb|GL476275.1| GENE 250 253695 - 254171 454 158 aa, chain - ## HITS:1 COG:no KEGG:EF1572 NR:ns ## KEGG: EF1572 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 284 99.0 9e-76 MIIDGFTLLLFLFVVVMYGYFYFVRKSIVIPAAKHPTTKYLVAFFSLMILANAFSAGDKI EMIRSVLYILIIFSFLYDARGFAEDCIITHPFDNRGTAFKDIEKIVLVQKSNGIRLGYLK KGRRGVVLRFSAPLEEMVLFLSTRMNEEAEIDIIVNED >gi|308151747|gb|GL476275.1| GENE 251 254183 - 254377 249 64 aa, chain - ## HITS:1 COG:no KEGG:EF1571 NR:ns ## KEGG: EF1571 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 72 100.0 7e-12 MKRNIALLQSEKMKKVQALANYYQESIDLPPGKNREAVIKKINESKKEIKEINDILTDIQ KKKK >gi|308151747|gb|GL476275.1| GENE 252 254571 - 255419 1006 282 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 280 4 281 283 239 45.0 5e-63 MKIAIVTDSTAYLPERIKDHPNLFVIPIPVILDGKIYNEGIDIEADEYYALLNNSKEFPT TSQPALGEVLELYKSIAEQGYDTIISIHLSSGISGFVHTLHGLTDEIPGVALYPYDSKIT SMPMGHMVEAALDLTEEKASLEEIFAKLDLIRDNTYAYLIVEDLNNLVRGGRLTNGAALI AGLLKIKPILTFEDGKIVLFEKIRSTKKAFARAEKIIGERNAGIEAPVKLYVIHANNRIV AEKEQAKLQKLYPNAEIEIGHFGPVIGTHLGEKAIGLAISAQ >gi|308151747|gb|GL476275.1| GENE 253 255495 - 256667 1105 390 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 88 388 6 308 309 260 45.0 3e-69 MSRVDRYKHIHEKSRPAEHKKTFNPRKSMGEHREEEPEELAESLQEPVYEDSYTEDSRRS ERRHQTDSGGGNGSDQPPRGKKDKKPKKKRKKSKTKRFFKWLVILLILLFAYSTVMFLKG KSAAEHDDSLPQEKVETFNGVKSSNGAKNILILGSDTRGEDAGRADTIMVLQLNGPSKKP KLISFMRDTFVDIPGVGPNKINAAYAYGGAELVRETLKQNFNLDTKYYAKVDFQSFEKIV DSMFPKGVKIDAEKSLNLDGVDIEKGQQVMDGHVLLQYARFRMDEEGDFGRVRRQQQVMS AVMSQMKNPMTLLRTPESLGKLVGYMSTDVPVSFMLTNGPSLLIKGKTGVESLSVPVPDS WNFGESSYAGSILEVDEQKNADAIEKFLNE >gi|308151747|gb|GL476275.1| GENE 254 256811 - 257659 915 282 aa, chain - ## HITS:1 COG:SP1369 KEGG:ns NR:ns ## COG: SP1369 COG0077 # Protein_GI_number: 15901223 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 1 280 1 275 282 276 51.0 3e-74 MKVGYLGPIGSFTYSATLAAFPDATLIPYASIPACLKAIEQQEVTCSIIPIENTIEGTVN ASIDYLYHQAQLPVQAELVLPIQQQLMVAKENQSIWQQSQKILSHPQALAQSQMFLAKNF PEAILESTPSTAYAAKYIAEHPELPFAAIAPKLSAEMYDLTIVEKNIQDLSVNQTRFWVL GSENLAISFPLSEKKITLAITMPSNVPGSLHKALSVFSWRGINLSKIESRPLKTKLGEYF FLMDLVNDQPEKLIEAALTELELIGAEIKILGDYPIYVLSTL >gi|308151747|gb|GL476275.1| GENE 255 257667 - 258173 554 168 aa, chain - ## HITS:1 COG:SP1370 KEGG:ns NR:ns ## COG: SP1370 COG0703 # Protein_GI_number: 15901224 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 162 4 157 158 132 44.0 2e-31 MESIVLIGFMGAGKTTIGQSLANKLKMPHLDLDTALIEKIGRSIPDYFEKYGEAAFREQE TQLLKELSKNTAVLSTGGGIVVGPENRSLLKSFQQVIYLHATPEELLKRIAEDTENQRPL AIERSSKEIITLFESRKNFYEECAKMTIDTTNRSPEEIINEILQQLKE >gi|308151747|gb|GL476275.1| GENE 256 258193 - 259473 1485 426 aa, chain - ## HITS:1 COG:SP1371 KEGG:ns NR:ns ## COG: SP1371 COG0128 # Protein_GI_number: 15901225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 424 427 528 62.0 1e-149 MQLRTNVKHLQGTLMVPSDKSISHRSIMFGAISSGKTTITNFLRGEDCLSTLAAFRSLGV NIEDDGTTITVEGQGFAGLKKARNTIDVGNSGTTIRLMLGILAGCPFETRLAGDASISKR PMNRVMLPLNQMGAECQGVQQTEFPPISIRGTQNLQPIDYTMPVASAQVKSAILFAALQA KGTSVVVEKEKTRDHTEEMIRQFGGTLEVDGKKIMLTGPQQLTGQNVVVPGDISSAAFFL VAGLVVPDSEILLKNVGLNQTRTGILDVIKNMGGSVTILNEDEANHSGDLLVKTSQLTAT EIGGAIIPRLIDELPIIALLATQATGTTIIRDAEELKVKETNRIDAVAKELTILGADITP TDDGLIIHGPTSLHGGRVTSYGDHRIGMMLQIAALLVKEGTVELDKAEAVSVSYPAFFDD LERLSC >gi|308151747|gb|GL476275.1| GENE 257 259486 - 260580 1045 364 aa, chain - ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 362 1 365 367 377 52.0 1e-104 MKKRILIVGLGLIGSSLALCIKKGHPNSEIIGFDNQAEATEFAKKTGLIDEIAESLTSGA RRAEIIFLCSPVKATLVQLEELNQLSLETALITDVGSTKVEINQLATKLNMKNFIGGHPM AGSHKSGVTAADERLFENAYYIFTDDHGEKNKQIQELQTLLKGTHAKFITMPAQEHDEIT GALSHLPHIVAAALVNESQQLNTTYPRAQQLAAGGFRDITRIASSDATMWTDILLSNRLV LLDLLENWQKEMTTVCQWLTEKNAPAIRNFFDKAKETRAQLPIHKEGAIPAFYDLFVDVP DQPGIIAEITQILGEADLSLTNIKILETREEIYGILQLSFKNQPDCQAAKQILSKKTNYT CYEK >gi|308151747|gb|GL476275.1| GENE 258 260614 - 261780 1455 388 aa, chain - ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 388 1 388 388 497 62.0 1e-140 MRFITAGESHGPELTAIIEGLPAGLPLSSEEINRELARRQGGYGRGGRMKIEKDQVRITS GIRHGKTLGSPVTLIVENKDWKNWTSVMSVEPVPEKQKKIRRVSKPRPGHADLVGGMKYQ HDDLRNVLERSSARETTMRVAIGAVAKKLLAELDIQVAGHVAVLGGIEATIPENLTIREI QERSEQSAVRVLDPSVEEKMKELIDQTKKNGDTIGGVVEVLVGGVPAGLGSYVQWDRKLD AKIAQAVVSINAFKGAEFGIGFEMAQRPGSQVMDEIVWDESTGYTRTSNNLGGFEGGMTN GMPIIVRGVMKPIPTLYKPLQSVNIDTKEPYKASVERSDSTAVPAASVVCEAVVATEVAK AMLEKFDSDSFEQMKEAVKRYRLYTQNF >gi|308151747|gb|GL476275.1| GENE 259 261782 - 262858 1350 358 aa, chain - ## HITS:1 COG:L0060 KEGG:ns NR:ns ## COG: L0060 COG0337 # Protein_GI_number: 15673738 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Lactococcus lactis # 1 354 1 356 356 400 56.0 1e-111 MKLTVTLPTHSYDLTIETGALDKIGTWVRSLWQPQRVAIITDETVNKLYGVAVEKELQAA GFETSLIAVAAGEQSKSLETAQLLYDFLAEQQLTRSDGLIALGGGVVGDLAGFVASTYMR GIHFLQVPTTLLAQVDSSIGGKTAVNTKKAKNLVGTFAQPDGVLIDPNTLKTLEPRRVRE GIAEIVKSAAIADVELWHRLSSLENEQDLVAHAEEIITACCKIKRDVVEEDELDLGLRLI LNFGHTIGHALENTAGYGVIAHGEGVSLGMIQITQVAEQRGLSPLGTTQELVTMLEKFDL PVTTDRWPEERLYQAITHDKKTRGGQIKIIVLEKIGQAKIVSLPTEEIRAFLNREGGI >gi|308151747|gb|GL476275.1| GENE 260 262881 - 263906 1269 341 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 333 1 333 338 344 51.0 1e-94 MIVIMKENATEKQMKQVIDLVTGAGLTTQTSQDNGKTVIGLIGDTEKLVEAELTALEGVE KSVRISLSYKLTSRLFHPENTVVDVNGVKIGDGSMTMMAGPCSIESLDQIRECARIAKAG GATILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADELDMQVITEVMDEANLELVAKYSDI LQIGARNMQNFKLLQAVGKTGKPIGLKRGIAGTIDEWLNAAEYIAAQGNFNVIFIERGIR TYETATRNTLDLSAVPLIKKLSHFPIIVDPSHGVGIWDLVPPMARAGVASGADGLIVEIH PDPANAWSDGPQSLNEKTYLRMMKEVHIIEKAMKEINALED >gi|308151747|gb|GL476275.1| GENE 261 263943 - 264809 800 288 aa, chain - ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 2 282 7 287 291 276 48.0 2e-74 MKEITGATRLAGLFAKPSQHSISPLIHNTAFQNLGVDARYLAFDVGQETLPQAIEAIRTF HMLGANLSMPNKVASVSYMDELSPTAQLVGAINTIVNKDGKLYGDSTDGTGFMWSLKEKK VDVFQNKMTILGTGGAALSIIAQAALDGVKEIAVYNRKSAGFNDSQKKLANFTERTNCVI HLNDLADTEKLAKDVAESVLLVNATSVGMHPHAHSSPIENYAMIQPKLFVYDAIYNPRET QLLKEARLRGAETSNGLDMLLYQGAAAFEQWTGQKMPVSVVKRKIENR >gi|308151747|gb|GL476275.1| GENE 262 265298 - 265753 625 151 aa, chain - ## HITS:1 COG:no KEGG:EF1560 NR:ns ## KEGG: EF1560 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 1 151 151 301 100.0 7e-81 MAREMTGLKFYFRNGETWTIDRRFIGDLWIKHITTSFGRIHGSEFVEIHPCEGFKIEIFQ EGDHVQTHDINLGGLELGMFSRALKYEDIERMEILYKNGTPDLVYFPYKDKTDEGLDNIY QSTKVSEKTKNLYIVIDPTQTVDDVYAEELK >gi|308151747|gb|GL476275.1| GENE 263 265843 - 266217 496 124 aa, chain - ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 5 123 3 121 121 70 30.0 1e-12 MPTEMFTKEFLVKESQTAKMLGSGDLEVLGTPALAAMIEQTAKEAVKDQLSVGETTVGTV LELRHLFPSAVGATIVVTMTSIEQTAHKIRYEFVAYEGERQIAKGSHQRAVVEIDSFLKR ITKD >gi|308151747|gb|GL476275.1| GENE 264 266217 - 267491 1208 424 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 24 418 1 394 394 351 49.0 1e-96 MSASGTENRTTLRIGTDAMKLTTIPNEFKEAAPVIREINAQGFEAYFVGGSVRDALLNKP IHDVDIATSAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDE VTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALR MMRGLRFASQLDFKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIE TECYQYCPKLREQGAGLFRLMDLPARQIETEAEAWTLLIQSLNLPEAEIRSFLKAWKLSN QLIQNVSQLVRGLRFRLSNDWQPMMLYELGEESAVLVERLLYYYQQESQVQVTKELVKAL PIHQRHELTITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSK GEKA >gi|308151747|gb|GL476275.1| GENE 265 267434 - 268213 875 259 aa, chain - ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 255 255 327 63.0 1e-89 MIKIIVAGFKGRMGSTATQMVLETADFELVGVYDPHEAQETVSFNDETAIPVFQRLEEVL AVKPDVWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAP NFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNP QEVESIPGARGADFEGLRIHSVRLPGLVAHQQVQFGSVGEGLTIRHDSYDRRSFMTGVAL ACRQVVQRTELLYGLEQML >gi|308151747|gb|GL476275.1| GENE 266 268206 - 268556 463 116 aa, chain - ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 7 110 2 105 105 121 65.0 3e-28 MSESEQRSLQSMQTEVDDYIQQFKTGYFSPLGQMARLTEEVGELAREVNHYYGEKQKKAD EKPKTVSEELGDVFFVLISMANSLEIDLTEVFEENMAKFNKRDRYRFERKDGKTHD >gi|308151747|gb|GL476275.1| GENE 267 268680 - 269564 1024 294 aa, chain + ## HITS:1 COG:SPy2153 KEGG:ns NR:ns ## COG: SPy2153 COG1284 # Protein_GI_number: 15675895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 279 16 281 290 282 52.0 4e-76 MEEQRFYFKDVLFIVLGSCIYAFGLVTFNIANDLAEGGVTGITLILRALFHFNPAYTTLL INIPLLLIGGKILGKRSLYYTLIGTVSLSVFLWFWQKFPVEINLDHDLLIAALLAGLAAG FGSGLVYRVGGTTGGTDVIARIFEKYFGISMGRSLLLFDVAVLLLSLTYIDVKRMMYTLI VSFVFSRVVDSVLDGAYAAKGILIVSNHSEEIGQSLMASLERGVTYLNGEGAYSQVEKRV LYTVVSPREIMEVKRIANEIDEKAFVSIINVHEAIGEGFTYAKPSKQRRFKLKQ >gi|308151747|gb|GL476275.1| GENE 268 269602 - 270141 617 179 aa, chain - ## HITS:1 COG:lin2035 KEGG:ns NR:ns ## COG: lin2035 COG5582 # Protein_GI_number: 16801101 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 179 5 179 181 119 39.0 3e-27 MFVSLSEKKKFLTWLVNTVPFGRREVLWILNYLLTHDAILNNVHFVENVEKTDRGIRVVA DGLGKEPLLLFIQAQEFTDPEQIFHEIRMNWRKALYLECVFPEAWQTSQYLSVLEDNPFA PWNEQVDQEVARAIDQYFKQEEQTQRMALLKAQIDDALETGNKEAFLELSDELNRLKQQ >gi|308151747|gb|GL476275.1| GENE 269 270151 - 271407 1687 418 aa, chain - ## HITS:1 COG:SPy1012 KEGG:ns NR:ns ## COG: SPy1012 COG0457 # Protein_GI_number: 15675015 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 406 415 239 40.0 5e-63 MSYSEKMVQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLE QFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSE AKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSS YSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAITLFQQLKTLNPHYQSL YLYLAEALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALE LGEKTDESRLTLSNLYLTEERFEEVITILNDLEETDHPYAEWNLAKAYNELEDFAVAKVH YEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLYHYLEHEPGDVDMQSVLADMEER >gi|308151747|gb|GL476275.1| GENE 270 271417 - 272457 843 346 aa, chain - ## HITS:1 COG:no KEGG:EF1552 NR:ns ## KEGG: EF1552 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 346 1 346 346 684 98.0 0 MKYNYSRGENKVAIIYGETFASVLKKRPVTTESIVVLANQRYYDLFSEKINYAFGEQLGL NWYICRNDVHCNDLSELESVLRFLADWPENQDVLLIGLGNEGVLQLTAFLHQVSKCSSKC WLMPVSVQALRQGLLPSVTIQQAQHATMHIENHSEEILFDSTLTNKKGAAPLIDLLVFIR AGLVCDYAYLQMLYQTYPDKKRLNQTSFNGILDELLSFYEQAGEKVDQFGRVFEAAFATT ENGHLLSGPMKRLLGLLLQVLWSQQVNHFDFQFKNFIVWFIRLGFPVAFPKEILSADYAE QVLAHTETLGPPMVLEKIGQLGVALKPTPDQLLTTIERYQEILKEI >gi|308151747|gb|GL476275.1| GENE 271 272763 - 273038 179 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 9e-12 MANKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARK GRNPQTGQEIQIAASKVPAFKPGKALKDAVK >gi|308151747|gb|GL476275.1| GENE 272 273286 - 274596 1895 436 aa, chain - ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 692 78.0 0 MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGG IDLGDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNK VDNPEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTIKFSLI GRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVY ESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVK KDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN DVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKA FTFEGTPIKIIPRRRK >gi|308151747|gb|GL476275.1| GENE 273 274770 - 275981 2025 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583] # 1 403 1 403 403 784 100 0.0 MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLDAKKVWEEIEQDFQAGK VIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYKGQTLAFKIIEIEPSENRLI LSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDLGGVDGLVHVSEIAHQH VGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRL TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEEHRIALSIKA LEPKPESQEEPKEEQEYELPEENTGFTMGDILGDALSDAKEEE >gi|308151747|gb|GL476275.1| GENE 274 276095 - 276775 781 226 aa, chain - ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 216 223 240 63.0 1e-63 MGKISIAIDGPASSGKSTVAKILAKQLNYVYCDTGAMYRAITYLALQNQIDIQAEEPLVA LCVNHTISFQQAENGQRVFIDGHEVTEAIRQPDVTNAVSAVSKHAKVREEMVALQQKIGQ AGGVVMDGRDIGTAVLPKAEVKIFLVASVEERAERRFKENQEKGIETDFETLKAEIERRD YLDSTREVSPLVQASDAVKIDTTGLTIEEVVAAIQNVIKQKGFELF >gi|308151747|gb|GL476275.1| GENE 275 277012 - 277632 719 206 aa, chain - ## HITS:1 COG:no KEGG:EF1546 NR:ns ## KEGG: EF1546 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 206 1 208 208 166 95.0 5e-40 MSKKDKKKNQAREPWEQSIYEPDQNGGGSRLAKRQQQRGNSLFLTVLVILLLLIIAIPIG TFLWMMQDKKPNESASKNSQPSSSLVQSSSKEKKKESTSKSVESSEPASSQPAENTTPSS SDAAAQQQQDQQAQQQQQQEQQQQQEAQNQQQQQAQNQQPVYDTVQSGEGARQVAERNGM TLEQILALNPGIDTSVFYPGQPLRIK >gi|308151747|gb|GL476275.1| GENE 276 277708 - 279144 1194 478 aa, chain - ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 1 468 1 460 467 344 42.0 2e-94 MTLEQELFTRFGYAAFKPGQKEVITNLLDGMNTLAVLPTGTGKSLCYQFVGQKLEGLTVI VSPLLSLMEDQVRQLQRQGIKGAVALNSTLQYSEKRYILAKMFQYDYLFLSPEMLLQQEV LSVLQRQKIALFVVDEAHCVYQWGVDFRPEYSKLDLVQKQLDFPLTLALTATATPVVQHA IIKQLFSHGSYQEVLSSVNRKNIGLFVKETSEKEEVLLDYLSKTAGKIIIYCATRNKTEQ ISQLIQAKTSFKVAYYHGGLEASERSRLQEQFIDNQIDILCATNAFGMGIDKPDVRGVIH FDLPDSLENYLQEIGRAGRDGQKSWALLLYKKGDEFIHRFFLEETRANRATLKSLIEGEE QAGLLENATELQQKWVQGYLAKDYSFEELEHRLEEKEKDRQAQLRGMLTYIETTTCRRTL IQTYFQEPIVKQSPETCCDNCALFFDIYQDSIVKSNKTSNQNEGGWRSKFLKLFKERD >gi|308151747|gb|GL476275.1| GENE 277 279151 - 280185 787 344 aa, chain - ## HITS:1 COG:BH1606 KEGG:ns NR:ns ## COG: BH1606 COG4955 # Protein_GI_number: 15614169 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 337 26 347 359 85 25.0 1e-16 MEATFILALLSHGYKVRASTLYHLLKGKRTSSVLIYGFLYDCLRFIGWWPTISEQAFFQF LEKLSKEKQIQYHKETNEIQLTKEGQLFLKEHHFSLLDYPAIDLYRFGRSDRESWQLIQF AVQVTSYLSFEEKQYIPLLSTPIPQLYLKRWLQQDKKEQRVQSIKEELLRGFELLPEAES DYLVAQLSGYQQTGKVPQQLTSHKTVLEQRLWHTQAVHHLLQLIMYGGNYPALQTLVWPY LEKNLNQSMQETQRLLTEGKTLQEIAEQRKIKPSTIHDHLLELAIQGQLQASVYLEKEAI LQNLAQTEQDPRLWVYRDWRAQEATLSYLDFRLYQIQQIWQEKE >gi|308151747|gb|GL476275.1| GENE 278 280221 - 280439 200 72 aa, chain + ## HITS:1 COG:L176167 KEGG:ns NR:ns ## COG: L176167 COG1141 # Protein_GI_number: 15673687 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Lactococcus lactis # 1 70 1 67 67 66 42.0 1e-11 MQSRLVPEKCIACGLCQVYAPNIFDYDDHGIVLFKDEPHARQQFIPENERENVLKAYRKC PTRAIEISKNEC >gi|308151747|gb|GL476275.1| GENE 279 280462 - 281868 1364 468 aa, chain - ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 292 4 295 605 104 21.0 5e-22 MKKCKNCRHVNRDTESFCEECGAPLMNESMHQEENQAQPSMNKGNESTPLRSKRSWIWVF LFVFIVLGAGSYFLGTHYFSKEQQISHFIEAIENGDAQELSKKMRTNESEFQVNPQSIKP LITYYQKNPTELKKLEKALLKDKKLHGLTIRETSQTAFFFHRYQFILTPVSVQLTTNQRG VTLAMNGREVGTSDSTTYQKELGPLAPGQYTFTATVKDSTGEPVITEEYRLLEEENYISS IPLDFKRMNFVVESNLPDADIYINDRKVGTLTNGSKTIGPLFWSKGMTIQLKKTINGEEI QTSKETIGENDFVEALSDNPTLQLNFPLAGDYDARKALETFYQAFAKQVKSHTDSTEFAK KYLVGGENNPQFPSFIEALERLREKKSTDVSPDFEVTINTLQLDGKENYHVNYYLEAKNS KAKENGLRYEWINGLNDQIHLVKEPLKEGQLQFVSIDEQTLAWLEKIL >gi|308151747|gb|GL476275.1| GENE 280 282049 - 282714 635 221 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 22 216 3 192 203 114 34.0 2e-25 MTKKRIKKFVEDGSLIGGFQMNNKVQKMVSIAMLAAIGTVLQFVAFPIMPTFSFLKIDFS DIPILLGMFLYGPLAGVITAFVRSLLHLFLTGLAPQNMVGDFASFLASSIFTLPIFYFFG KKKNIRTNRIVGLVSGILALTIFMSIANYFVITPVYLQLYGVTTQQFLGTSLASYVAIGI VPFNLIKGLLVSGVFLVLHAKLLPWLSKKQHTIQKKTPLTK >gi|308151747|gb|GL476275.1| GENE 281 283059 - 283775 1077 238 aa, chain - ## HITS:1 COG:SP1874 KEGG:ns NR:ns ## COG: SP1874 COG1187 # Protein_GI_number: 15901702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 3 237 2 236 240 285 63.0 7e-77 MERLQKAIAHAGVTSRRKAEELIVKGRVKVNGQVVKELGTQVSKQDTVEVDGVPIYQEEY GYYLFYKPRGVISAVSDDKGRKVVTDYFTDVTERIYPVGRLDYDTSGLLLLTNDGSFSQK LTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIRIDGKRTAPANFQILSADIKTGSSVVEL TIHEGRNHQVKKMFQAVGFPVQKLKRERYGELTLQGLRPGQYRDLTKKEISQLLNQAK >gi|308151747|gb|GL476275.1| GENE 282 283779 - 284384 786 201 aa, chain - ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 175 183 162 50.0 4e-40 MTLVSQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVG NHFVLTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGS IQKLVARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDIQQMEDELEEELPMD LFFDRYQETNPMSETTEGEEA >gi|308151747|gb|GL476275.1| GENE 283 284381 - 285166 932 261 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 242 1 239 249 195 48.0 9e-50 MQEINLKLDVFEGPLDLLLHLIQKLEIDIYDIPITAVTEQYMSYIHAMQTLELEVAGEYL VMAATLMAIKSQMLLPKQELEIIDDEDFFEEEDPREALVAQLLEYRKFKYAATVLHEKEE ERKLYYTKEPMDMDDYKEEDTTLPPNQINTIDLFLAFHSMLEKKKNRQPVETTVASDDVS IEEKISAISERMRQVQKGKAVSFDSFFDSYSKQEIVTTFMALLELMKTGVIYAEQENNYS EILLFNTETQQEDTTEVEETQ >gi|308151747|gb|GL476275.1| GENE 284 285240 - 286130 931 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 296 1 296 296 319 53.0 4e-87 MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSL HEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLI ETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLG DYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNIT PHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFPRA >gi|308151747|gb|GL476275.1| GENE 285 286300 - 287229 1195 309 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 7 306 11 317 319 289 47.0 5e-78 MNRWLKILIALIVVIAIGLIAAGLYFYNYAVVPGKKDFINENTPGSKVVQTPEGAWFKDD KNRQEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLA PDARGHGKSQGDYIGFGWPDRKDYVQWIEKVLTENGQQEQITLYGVSMGAATVMMTSGEK LPDNVKAIVEDCGYSTVNQELQYQLKELFNLPSFPLVNVTSGITKLRAGYFFGEASAVKQ LQKNHLPMLFIHGENDTFVPFSMLDEVYNATQGPKEKYVVPGAEHAKAYNKNPEKYKETV AAFLDKYIK >gi|308151747|gb|GL476275.1| GENE 286 287424 - 288515 1360 363 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 363 1 363 364 575 76.0 1e-164 MGKLGISIYPERSTFEKDKAYLDLAHKYGFKRVFTSLLQINDDREKVLAEFKKVVDYANQ LGMEVMVDINPALFEQLGISYDDLSFFHDMGAYGIRLDLGFTGQEEANMTRNPYGIKIEI NMSSGTSYVDNIMAYSPNTENLLGSHNFYPHRYTGLGYDHFVYCSEKFRKYNLNTMAFVN SHDATFGPWPTQDGLCSLEDHRDLEIATQVKHLVLTGLIDDISVGNAYASEAELAAMAEA FHAPYPSIKVDTEPEITEDERIALFDNLHSYRGDRSDYVLRSTMTRVYYKDRPFPAHTTR DIVRGDVLIDNVGYGQYKGETQIALKEMKNDGRVNVVGRISDDERFLLEFLKPWSSFKLI ENK >gi|308151747|gb|GL476275.1| GENE 287 288696 - 289445 779 249 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 57 243 4 193 194 238 62.0 7e-63 MKHKKMLAVASVAAFTLLLAGCNTTNNKGTTATSDSVAKSSESKTKDSVDLNSLDLPQLD DKVAEDQDLVQMVTSMGNIEIKLFPKQAPKTVENFMKHAKDGYYDGLTFHRVINNFMIQG GDPSGDGTGGNSIWNKPFEDEFSNQLYNIRGALSMANAGPNTNGSQFFIVQNTDDQSDGL LYDDYPKAIIDAYKKGGYPSLDKKHTVFGQVTKGMDIVDKIAKVEVGANDKPKTDVKIEK INILQEAKK >gi|308151747|gb|GL476275.1| GENE 288 289489 - 289863 555 124 aa, chain - ## HITS:1 COG:SA0358 KEGG:ns NR:ns ## COG: SA0358 COG5294 # Protein_GI_number: 15926072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 5 100 122 61 37.0 3e-10 MKFIKFLVVTAIVIGGGLFGAKFYAEKNSGELAGVLDQLNPLVKEGNVYVKTKKADSVNG YGIASYTQVAADEEGKTREITFTADHELKTDHYLKVSNKGAHINTYEEVNQDQVPEKALQ AIQK >gi|308151747|gb|GL476275.1| GENE 289 290006 - 290545 630 179 aa, chain - ## HITS:1 COG:no KEGG:EF1531 NR:ns ## KEGG: EF1531 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 308 99.0 5e-83 MVRTKVYTKEKILNVAEKILVDKGFSNLTARNIADTMGISTQPIYLEFVNMDDLKRTLIK SLFHRMQLFYKADVGASDPVIALGLNFILFAQKHQKIYTALFMKAHGYEEELQQMLQTFF EERLLLDKKYVQMDKGKFVELFPKMVVIYLGLATAVTMKTIDLTKNQEIQLLSQLLIEE >gi|308151747|gb|GL476275.1| GENE 290 290770 - 292068 1705 432 aa, chain - ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 1 426 6 428 446 275 38.0 9e-74 MLDKLTVWIENHLAGPMAKIANQRHLRAVRDGIIATLPLIIVGSFFLIIAFPPLPESWGI TQFLTSNAATILLPYRMTMYIMALYATFGIGASLAKSYNLDQVSGGILATIAFLLTLVPV AIPEEASKAAGVSGFVLPMANLGGAGMFVGIVTSIIAVEIYRVTDKSKFKITMPDNVPPA VARSFESLTPTLIVMLLIGSITYYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFF WFFGIHGASIVGSLARPLWLQLLEENTTAKAAGEALPRIAAEPFYQWFIWIGGAGATIGL AILLAFRAKSEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIAW FATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIVLILVAILIYYPFFVAYDKN ELAKEQGKQIEE >gi|308151747|gb|GL476275.1| GENE 291 292095 - 292397 303 100 aa, chain - ## HITS:1 COG:no KEGG:EF1528 NR:ns ## KEGG: EF1528 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 139 100.0 3e-32 MENNQAMVPKFSVKSAGFLFSMGLLCGVLLPSVLLWTFSLPFNIGAMIFLPVGIAFALAY SHYFIETKTGFCKRFIWLFLISLILLELISYLWLIKGVIF >gi|308151747|gb|GL476275.1| GENE 292 292536 - 293852 2046 438 aa, chain - ## HITS:1 COG:SP1079 KEGG:ns NR:ns ## COG: SP1079 COG0536 # Protein_GI_number: 15900948 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 3 438 1 434 434 610 77.0 1e-174 MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGDVVLVVEEGLRTLMDF RFNRHFKATPGENGMSKGMHGRGSEDLLVKVPPGTTVRDAETGALIGDLIENGQTLVVAK GGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVI SSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTR VILHVIDMSGMEGRDPYEDYLAINKELASHNLRLMERPQIIVANKMDMPEAEENLAKFKE QLAKERTDEYADELPIFPISGVTRKGIEPLLNATADLLEVTPEFPLYEDEVVEEETVRYG FQPEGPEFTIDREPDASWVLSGEKLEKLFEMTNFDHDETVMRFARQLRGMGVDEALRARG AKDGDIVRIGNFEFEFVE >gi|308151747|gb|GL476275.1| GENE 293 294140 - 295150 1168 336 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 457 69.0 1e-128 MTVKVGINGFGRIGRLAFRRIKEVSDDIEVVAINDLTSPTMLAHLLQFDSTHGTYPGTVT ATENGIVVDGEETRVYAEPDASKIPWVKENGVDIVLECTGFYTSEEKAQAHLDAGVKRVV ISAPAGAMKTIVYNVNDDTLDANDKIISAGSCTTNCLAPMAYFLNNEFGIEVGTMTTVHA YTSTQMLLDGPVRGGNLRAARSAADNTIPHSTGAAKAIGLVIPELNGKLQGHAQRVPVVD GSLTELVSILKTKVTADQVNEAMKKHTIDNPSFGYDDREIVSGDIIGTTEGSIFDPTQTE VTTAGDFQLVKTVAWYDNEYGFTCQMIRLLEKFANL >gi|308151747|gb|GL476275.1| GENE 294 295201 - 295650 542 149 aa, chain - ## HITS:1 COG:lin2070 KEGG:ns NR:ns ## COG: lin2070 COG0735 # Protein_GI_number: 16801136 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 9 148 7 146 152 201 70.0 3e-52 MDSTAALKKTKKQLHESGFKLTPQREATVLVLLENEKDHLSAEEIYFLVKQKSPEIGLAT VYRTLEILTDLKVVDKVSFNDGLARYDLRKEGAKHFHHHLLCLECGTIEEVEEDLLGEVE QIVESRYHFLVKDHRLTFHGICQSCQSKH >gi|308151747|gb|GL476275.1| GENE 295 295766 - 296647 525 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 14 284 10 281 285 206 41 7e-52 MRELLATTFTGIVVDENEQFYFVQKNGITFRLKKEEGTHAIGEAVEGFGYLNQKQEPALT TTIPTVRIGSYGFGTVTGTRRDLGVFVDVGLPDKDVVISLDELPTMRELWPKKEDRVMVT LKVDSKDRIWGELADEKVFKAMAKRGNAEMQNQNLTGHVYRLKLAGTYILTDDLYIGFIH PSERFQEPRLGEKVVGRVIGVRPDGVLNLSLKPRSHEVISDDALMILTFLERANDHQIPF TDKSSPDEIKQTFGISKAQFKRALGHLMKQKLIKQEDGKTILIGSLEQSKEKN >gi|308151747|gb|GL476275.1| GENE 296 296721 - 298784 2439 687 aa, chain - ## HITS:1 COG:no KEGG:EF1523 NR:ns ## KEGG: EF1523 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 687 1 691 691 885 96.0 0 MTKKCPKCRNEFDAELTTCPTCGYSLTDTTVDKEEAETTSTNIDFETQENEQHEDQLNEN IEWSELKDMSLGHVMELFGESPEEESNDDKKEESIEDNLIVSDSEDVSDSEAVLQEGASE ETHDSVEETIPATEAMPTHSTEEKLATDEAVNLEETTEETTTVEAETAEVSKTVKSEEEA LTEISGTEVISTTSEEEIFSQPPIEDQDVTPNETLQAYIQAHRADTEMSENPSEETAETQ ELENSGEAVLTQAETPTESISDSEEGLTSAASLEAPSEADATEEKVSDSGVIPPMNETGN AQPAPAPKKPSKKVVFVALAVVLLAGGSAWAYHDQTQKAAAQEAAALTKKTDTLKDELAA FYTTKEQVFIKPDMVTVSPEKLSKQVAEIKDSEEYSQLNKQIQTLKVKQQTIQQINQLFE APIVNGNELKPAILAADQPISVKKLTGNDPFDQLMNQAIDQANQQYNQLQKAKKAVEVIY KDGKTTNQLNRDTYQAAKAEVDKVTSDKLKKELVKQVTTADQALTKVEEEQKRIAEEQAA AEQAKQAEEQAKQAAAAKKEDAKKEETAKTEANGYTAPNSDGVYTSPLYAPDAADIADSS NPAWTWAPGVKEKVLDTVIARGYVVPGGYSLEPAKIVNGEGYYNLYATNNQSKLLEGTTE KNVHMYLVTINAKTGWFKGNASRNAGQ >gi|308151747|gb|GL476275.1| GENE 297 298936 - 300042 1524 368 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 10 368 17 374 374 494 79.0 1e-139 MEKETSKKYEAAVAAFIKENKPKGTVVYDDLANQLATPYTLDAEAMEKLIQKVEDAGISV VDENGDPSEHSLKKDEKEAEKAQAEDLSAPTGVKINDPVRMYLKEIGRVQLLTAAEEVEL ALKIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIG AEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDNGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KQLKDFLE >gi|308151747|gb|GL476275.1| GENE 298 300151 - 302037 1921 628 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 4 623 3 622 626 450 41.0 1e-126 MAQRIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKNYMGLCPFHEERSPSFSVAEDKQIFH CFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRSLL QLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQ LDETLFEPSGLFVQRDNGTFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEMPKY LNSPETTLFNKRETLFNFDKARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVASMGTSLT NEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSIVSIPEKLDPDEYVRK YGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRY LNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPPPMEEPVFEENHVQNK LPLTQVQKAERSLLFRLMNEQGVRQTIQQLPDFSFAHDEYQELYFLLESYATLHQSFDIA DFINFLQDNQTKQLAIEIAYQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKR VGNQQLEAELTMEIIQLARQLKAQRTFT >gi|308151747|gb|GL476275.1| GENE 299 302354 - 304690 2398 778 aa, chain - ## HITS:1 COG:SP1623 KEGG:ns NR:ns ## COG: SP1623 COG0474 # Protein_GI_number: 15901459 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 10 770 8 778 778 672 48.0 0 MLNKVDLKKGLSTEEVAKQKELGLQNNYEENVAKSTKDIIFDNVMTLFNFLNFAIAVCLL FVGAYSNLAFLAIIIVNMSIGIFQEIHARNLVQKLSIVAKENVHVVRNGVQQEIDTKELV MEDIVIISAGEQVPSDMEVIDGKVEANEALLTGESDLIEKEIGDTLLSGSFIVSGQAYAR VIHVGAENYAVKITQEAKVHKPIQSELVNSIRKVSKFTSWVIIPLGIILFVEAFWLRDAG IKTSVVASAAALLGMLPKGLVLLISIALTTGVIKLAKKRILVQDMYSIETLAHVDTLCLD KTGTITEGKMKVQKAIILHDKYEELFPQIIGSYLSESTDNNITMQAIRDHYEVSNRFGAK EVLAFSSERKWGAIEFPEIGTVYLGAPERLVDDSRLPEAVFTAQENGYRVLMLAIAEQQP LNETKMPYLEPLAILEIDDPIRQNAKETLAYLKEEGIDLKVISGDNPVTVSNIARRAGLP GYESYIDLSTKTTEAEVREAVQQYTVFGRVSPQQKRTIVRELKDTEHVVAMTGDGVNDVL ALREADCSIAMAEGDGATRQISNLVLLDSDFTTLPDVLFEGRRVVNNVTRVSSVFFIKTI YSFILSIICALTAIAFPFIPIQVTLIDLAIEGYPAFFLSFEGDKRKVVGKFLPTALKNAS VNALLVVVNIIAVYLIGQNQGFSSLDTTTLMYYLLVGISCMAVVRACLPLNPLRIFLVFS TIIGIYVAAMLFHNILEIGFLTSQTMGLFFIMMAINIVVRVTIGFVQMKRAGKTIKDL >gi|308151747|gb|GL476275.1| GENE 300 304819 - 305403 726 194 aa, chain - ## HITS:1 COG:SPy1147 KEGG:ns NR:ns ## COG: SPy1147 COG0741 # Protein_GI_number: 15675124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Streptococcus pyogenes M1 GAS # 2 194 12 197 199 156 45.0 2e-38 MLLLFVGLIAGLGYLGYKIHQNVETVMTFEKQVEAEVKKNKIPEYKTLALAIIYTESKGK SGDIMQSSESVYGQQEVIETPEESIAHGVKFLAEALAKAKEAGCDEWTGVQAYNYGLDYI QFVKERGGKHTTELAEEYSREVLSPLLGNDQNTKYRYYRWQALVYNGGYLYQNGGNMFYA EIVKMNRWFIEKLN >gi|308151747|gb|GL476275.1| GENE 301 305727 - 306416 522 229 aa, chain - ## HITS:1 COG:SP1616 KEGG:ns NR:ns ## COG: SP1616 COG0036 # Protein_GI_number: 15901453 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 1 229 1 229 231 375 74.0 1e-104 MNKVEFSPSLMTMDLDKFKQQITFLNDHVASYHIDIMDGHYVPNITLSPWFIEELRKISK LPVSAHLMVTNPSFWVPQLVDIKCEWICMHAEVLDGLAFRLIDQIHNANLKAGIVLNPET PIESIFSYIELLDKITIMTVDPGFAGQRFIEGTLDKIVALRNLREEKGYRYVIEMDGSSN RNSFKRIDAAGPDIYIVGRSGLFGLNEDIEKAWRMMSRDYEEMTGKKIP >gi|308151747|gb|GL476275.1| GENE 302 306554 - 307654 1290 366 aa, chain - ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 4 366 2 361 361 404 67.0 1e-112 MKKLKELNLKGHLLTAISYLIPIVCGAGFLIAIGMGFGGSSQGTLVPGEFSLWDALATMG GAGLGLLPVVISTGISFSIAGKPGIAPGFIIGLTANAVGAGFIGGILGGYLAGYLVLAIL KYVKLPNWARGLMPTLIIPFLTSITGGLIMVYIIGTPITAFTSLLTNFLDSLGNSSLLIF GGVIGLLSGIDYGGPINKTVFAFVLTMQAEGLNGPITALQLVNTATPIGFGLAFFFAKLF RKNIYTKLEVETLKSAVPMGVINIVEGVIPLVMNDIVRGVIATAIGGFVGGATTMILGAD ATVPFGGVLMIPTMSKPLAGVIAIVVNAVVTGLVLAIIKKDVTEKDMEALVEKEEEEINL EDIQIF >gi|308151747|gb|GL476275.1| GENE 303 307764 - 308213 451 149 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 149 168 55.0 3e-42 MEVKDIIDLETVKTNMNVNTKEEALKELANLLLENGNISDEKGFIKDIYAREAEGQTGIG NYLAIPHGKSAYVKKIGVAIGINGTEIPWESLDDNGVKGIILFAVGNDHKETTSHLKLLS LFARKLGNDEVVREFLQSKSPEDVVKAFS >gi|308151747|gb|GL476275.1| GENE 304 308233 - 308550 547 105 aa, chain - ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 103 6 108 108 125 79.0 1e-29 MKIVGVAACTVGIAHTYIAQEKLENAAKKAGVEIHVETQGTIGIENKLTDEQIKEADIVI LAIDVKISGRERFDGKRIIQVPTEVAVKSPTKLIEKAEEVMTQEK >gi|308151747|gb|GL476275.1| GENE 305 308550 - 309002 550 150 aa, chain - ## HITS:1 COG:no KEGG:CAR_c23180 NR:ns ## KEGG: CAR_c23180 # Name: not_defined # Def: hypothetical protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 1 146 1 145 145 101 44.0 8e-21 MNVNPLYQVFLNQELLSKQQVYQFIAETAAPLLTPEEKKQIEESLVNREKMGSNQIAEQI VLPHLENALLKKSEIYLIGLKTEIQEWTADIKQVKLIIVILLKENEQLKVKKEISRFTRK LANEDFLEKLLRLKTETDFYKIIEKFEEEK >gi|308151747|gb|GL476275.1| GENE 306 308992 - 310473 916 493 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 489 4 485 485 320 39.0 6e-87 MSSKKERGQKLLLLLSKKQDYMTAEELANCLSTSPKTVYRLIKKINDEFSEGSLILSEKG RGYKLDYERFMEQNRHLVEKESDFSPRERRNRILEELLLASPQAKNVYELFARYYVGDSV IFSDEQQLSEDLKKYDLTLKRKNRTLAIIGEERAIRKAISDRIQLLNIIDIEDLRNNKAL NFNNYDVLFTLDQVRNIEKKLDITIPHPYNVNIFSHLYILISRSRKVAISEKYQLSNEEE QELTKDLVLKKVAQTTIQQIETYLNKRLPNVEIYYLYQYLVSSRMQGSFSKVTNFSFKVM QVTQFYLEEMSAQLKILTDNDQLFLELASHIKPMINRLENSIHVKNSLLDQIKMTYETIF GKIAQVSKQVSKNYQLPAINEDENGFITLYFARMIETNQLPIRTLIMCTTGIGTSELLRV KVEKKFPELQIVEIIATRNIKKSLKDYSDIELILTTIHLQEKVPIKSLLVSAMFTMDDQY RLQRKVEEIYHER >gi|308151747|gb|GL476275.1| GENE 307 310714 - 312711 2579 665 aa, chain - ## HITS:1 COG:YPO2628_1 KEGG:ns NR:ns ## COG: YPO2628_1 COG1263 # Protein_GI_number: 16122841 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Yersinia pestis # 3 401 5 406 410 454 58.0 1e-127 MKAYMQRMGRSLMLPVAVLPAASLLVGIANWIVGTIGASPATTFLMNGGLAILNNLALLF AVGLALGMSKDKDGSAALAGLVAYLVPKTVLAPASIQAIKGFKDIAEVNPAFNSMDNNVF VGIVAGLVAAAMYNRFSGVKLPMALSFFSGKRLVPIMSAISMLAISAVLFFFWPVVYNGL VAFGKGISSLGFVGAGLYGFFNRLLIPTGLHHALNSVFWFDVAGINDIGNFLAGQQALDT GKAIVGQTGMYQAGFFPVMMFGLPAGAFAIYQCARPEKKKVTASLMLAAGFAAFFTGVTE PLEFSFMFVAWPLYVLHAVFTGISLAFAAFMHWTAGFAFSAGFVDFFLSLKNPVANHPMM LVVQGLVFAAIYYFGFRFAITKFNLMTPGREEGDGEETPDVAEGDNKFASLARRIYDGLG ADANVTSIDNCTTRLRLTVKDTGKVDQAKIKATGVPGVKVIDDTNIQVIVGTEVQFVADE MQRLYNHQAPATPVKETPVSQPVVEEKAPVSTKETELYSVANGKVIPISEVPDDVFSAKM MGDGFAVVPTDGEVSTPVAGKITSIFPTKHALGIQTDSGIEVLLHMGLDTVELQGGPFTL HVEEGQVVKQGDKIATIDLAALEQAGKKSDLIVVFTNQDIVAQYDLQKAGQTTSMNDVIG NVTVK >gi|308151747|gb|GL476275.1| GENE 308 312748 - 313581 878 277 aa, chain - ## HITS:1 COG:BS_sacT KEGG:ns NR:ns ## COG: BS_sacT COG3711 # Protein_GI_number: 16080858 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 274 1 272 276 187 38.0 2e-47 MKIKKVLNQNAVLVLDEGQEKVAVGKGVGFNKTKNDVLSRQLVERMFVMEPEGLKKLQVL LSQIEDKYFLASEEIIQHAETVLGEKLNEHINIGLSDHIAFAAENIQNNIIVRNKLLSEI EILYSEEFAIAQWAVEYLTQTLEIPFSYDEAGYIAIHIHSARSGRTDNSKSIREVTIVSE IIHLIEQELAIDIHDDKNSLSYSRLVNHLRLFIHRFQQNQYAVLDEEILEVVKKKYAESY EISKKVQVLLMRNFHYQVPNEELGYLSIHIERLRMTK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:12:54 2011 Seq name: gi|308151746|gb|GL476276.1| Enterococcus faecalis TX4000 genomic scaffold Scfld57, whole genome shotgun sequence Length of sequence - 24051 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 14, operones - 8 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 65 - 919 727 ## COG1192 ATPases involved in chromosome partitioning + Term 925 - 960 2.4 2 1 Op 2 . + CDS 996 - 1205 221 ## SSUBM407_p002 omega protein 3 1 Op 3 . + CDS 1222 - 1494 433 ## SSUBM407_p003 epsilon-antitoxin 4 1 Op 4 . + CDS 1496 - 1804 278 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system + Term 1828 - 1862 5.3 5 2 Op 1 1/1.000 - CDS 2357 - 2857 264 ## COG1011 Predicted hydrolase (HAD superfamily) 6 2 Op 2 . - CDS 2862 - 3629 585 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 3967 - 4026 8.8 7 3 Op 1 4/0.000 + CDS 4118 - 4543 657 ## COG0698 Ribose 5-phosphate isomerase RpiB 8 3 Op 2 3/0.000 + CDS 4560 - 5075 506 ## COG0698 Ribose 5-phosphate isomerase RpiB 9 3 Op 3 3/0.000 + CDS 5086 - 6018 911 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 10 3 Op 4 2/0.000 + CDS 6021 - 7001 903 ## COG3684 Tagatose-1,6-bisphosphate aldolase 11 3 Op 5 13/0.000 + CDS 7029 - 7346 399 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 12 3 Op 6 8/0.000 + CDS 7346 - 9052 1457 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 9056 - 9115 3.3 13 3 Op 7 . + CDS 9199 - 10605 1241 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 14 3 Op 8 . + CDS 10628 - 10900 138 ## SUB0801 hypothetical protein 15 3 Op 9 . + CDS 10921 - 11820 402 ## COG2017 Galactose mutarotase and related enzymes + Term 11831 - 11870 3.1 16 4 Tu 1 . - CDS 11970 - 12077 59 ## - Prom 12146 - 12205 3.2 + Prom 12046 - 12105 6.5 17 5 Tu 1 . + CDS 12257 - 12865 473 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system 18 6 Op 1 . - CDS 12813 - 13082 244 ## pWCFS103_42 putative resolvase 19 6 Op 2 . - CDS 13079 - 13399 294 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 13423 - 13482 7.3 + Prom 13416 - 13475 9.6 20 7 Op 1 . + CDS 13582 - 14055 178 ## COG4644 Transposase and inactivated derivatives, TnpA family 21 7 Op 2 . + CDS 14098 - 14319 122 ## pWCFS103_43 putative transposase 22 7 Op 3 . + CDS 14291 - 15295 393 ## pWCFS103_43 putative transposase 23 7 Op 4 . + CDS 15193 - 16554 828 ## COG4644 Transposase and inactivated derivatives, TnpA family + Term 16633 - 16692 7.3 + Prom 16795 - 16854 9.2 24 8 Tu 1 . + CDS 17018 - 17992 961 ## COG3049 Penicillin V acylase and related amidases + Term 18201 - 18253 6.0 + Prom 18285 - 18344 6.7 25 9 Op 1 . + CDS 18437 - 18742 302 ## gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 26 9 Op 2 . + CDS 18736 - 19263 442 ## gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 + Term 19359 - 19399 0.2 27 10 Op 1 . + CDS 19670 - 19771 65 ## + Prom 19773 - 19832 5.3 28 10 Op 2 . + CDS 19858 - 20100 138 ## gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 + Term 20111 - 20161 9.1 + Prom 20239 - 20298 8.9 29 11 Tu 1 . + CDS 20483 - 21349 454 ## Dred_0847 hypothetical protein + Term 21386 - 21428 9.2 + Prom 21384 - 21443 6.4 30 12 Op 1 . + CDS 21487 - 22083 514 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 31 12 Op 2 . + CDS 22100 - 22387 252 ## EFA0074 hypothetical protein 32 12 Op 3 . + CDS 22381 - 22605 226 ## EF_C0011 UvrC family transcriptional regulator 33 12 Op 4 . + CDS 22665 - 22874 141 ## EFA0075 hypothetical protein + Prom 23098 - 23157 10.8 34 13 Tu 1 . + CDS 23216 - 23488 103 ## gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 - Term 23452 - 23513 20.3 35 14 Tu 1 . - CDS 23521 - 23958 282 ## gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 - Prom 23978 - 24037 8.3 Predicted protein(s) >gi|308151746|gb|GL476276.1| GENE 1 65 - 919 727 284 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 16 284 13 288 293 125 30.0 7e-29 MEKEELKILEELRRILNSKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKFNLKVLMIDKD LQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIIHLTDNLDLIPGTFDLMLLPKLTRS WTFENESRLLATLLEPLKSDYDLIIIDTVPTPSVYTNNAIVTSDYVMIPLQAEEESTNNI QNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKEHEEDNLVFQNIIKRS NKVSTWSKNGITEHKGYDKKVLAMYENVFFEMVERIIQLENEKE >gi|308151746|gb|GL476276.1| GENE 2 996 - 1205 221 69 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p002 NR:ns ## KEGG: SSUBM407_p002 # Name: not_defined # Def: omega protein # Organism: S.suis_BM407 # Pathway: not_defined # 1 69 3 71 71 112 95.0 4e-24 MGNLGAQKAKRNDTPISAKKDIMVDKTVRVRADLHHIIKIETAKNGGNVKEVMDQDLEEY IRKYLPDKL >gi|308151746|gb|GL476276.1| GENE 3 1222 - 1494 433 90 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p003 NR:ns ## KEGG: SSUBM407_p003 # Name: not_defined # Def: epsilon-antitoxin # Organism: S.suis_BM407 # Pathway: not_defined # 1 90 1 90 90 112 78.0 4e-24 MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELDTKNTRLLEVNLLNQLEVAQEVDLFQ QPFEELQAIHEYWRSMNQYSKQILTKEKVA >gi|308151746|gb|GL476276.1| GENE 4 1496 - 1804 278 102 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 100 1 100 287 152 78.0 4e-36 MANITDFTEKQFEDRLEKNVERLTKNRLAVESPTAFLLGGQPGSGKTSLRSAISEETQGN VVIIDNDTFKQQHPNFDELVKLYEKDVVKHATSYSNQLVKLN >gi|308151746|gb|GL476276.1| GENE 5 2357 - 2857 264 166 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 6 151 5 152 300 127 40.0 8e-30 MTYKNIVFDLDDTLYDQQLPFKRSVEKCFPTIDIQQIDNIYKRFRYWSNVAFPKYTKKLI SIEQLRIFRCQKTMEEFGIDSISRTEALDFQADYELDQITMIPEIHQLLLALHKNRIPIG ILTNGPVDLQSRKLQNIGAYQYFEKQNIIISSPLTEELQKIAMKVM >gi|308151746|gb|GL476276.1| GENE 6 2862 - 3629 585 255 aa, chain - ## HITS:1 COG:SPy1924 KEGG:ns NR:ns ## COG: SPy1924 COG1349 # Protein_GI_number: 15675732 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 255 1 256 257 292 63.0 4e-79 MNKKRRLEKILDMLKIDGTITIKEIIDELDISDMTARRDLDALEADGLLTRIHGGAQLLS SKKPLEKTHIEKKSLNTKEKIDIAKKACSLIKDGDTIFIGPGTTLEQLALELKGRKGYKI RVITNSLPVFLILNDSETIDLLLLGGEYREITGAFVGSMASTNLKAMRFAKAFVSANAVT HNSIATYSDKEGVIQQLALNNAVEKFLLVDSTKFDRYDFFNFYNLDQLDTIITDNQISPQ NLEEFSQYTTILKAD >gi|308151746|gb|GL476276.1| GENE 7 4118 - 4543 657 141 aa, chain + ## HITS:1 COG:SP1193 KEGG:ns NR:ns ## COG: SP1193 COG0698 # Protein_GI_number: 15901058 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 141 215 83.0 2e-56 MAIVVGADLKGTRLKDIVKNFLVEEGFEVIDVTKDGQDFVDVTLAVASEVNKDEQNLGIV IDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITVGAEIVGDELAKNIAKGF VNGKYDGGRHQIRVDMLNKMC >gi|308151746|gb|GL476276.1| GENE 8 4560 - 5075 506 171 aa, chain + ## HITS:1 COG:SP1192 KEGG:ns NR:ns ## COG: SP1192 COG0698 # Protein_GI_number: 15901057 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 171 171 311 88.0 3e-85 MRIAIGCDHIVTDEKMAVSEFLKSKGHEVLDFGTYDHARTHYPIYGKKVGEAVVSGQADL GVCICGTGVGINNAVNKVPGVRSALVRDMTSAIYAKEELNANVIGFGGMITGGLLMNDII EAFIEAEYKPTEENKKLIAKIEHVETHNAHQADEDFFTEFLERWDRGDYHD >gi|308151746|gb|GL476276.1| GENE 9 5086 - 6018 911 310 aa, chain + ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 310 1 309 309 399 67.0 1e-111 MILTVTLNPSVDISYPLETLKIDTVNRVKDVSKTAGGKGLNVTRVLYESGDKVTATGFLG GKIGEFIESELEQSPVSPAFYKISGNTRNCIAILHEGNQTEILEQGPTISHEEAEGFLDH YSNLIKQSEVVTISGSLPSRLPNDYYEKLIQLASDEGVAVVLDCSGAPLETVLKSSAKPT AIKPNNEELSQLLGKEVTKDIEELKDVLKESLFSGIEWIVVSLGRNGAFAKHGDVFYKVD IPDIPVVNPVGSGDSTVAGIASALNSKKSDADLLKHAMTLGMLNAQETMTGHVNMTNYET LNSQIGVKEV >gi|308151746|gb|GL476276.1| GENE 10 6021 - 7001 903 326 aa, chain + ## HITS:1 COG:SP1190 KEGG:ns NR:ns ## COG: SP1190 COG3684 # Protein_GI_number: 15901055 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 326 326 541 86.0 1e-154 MILTEQKRKSLEKISDKNGVISALAFDQRGALKRLMAQYQDTEPTVAQMEELKVLVAEEL TKYASSMLLDPEYGLPATKALDKEAGLLLAYEKTGYDTSSTKRLPDCLDVWSAKRIKEQG ADAVKFLLYYDVDSSDELNQQKQAYIERVGSECVAEDIPFFLEILAYDEEISDAGSVEYA KVKPRKVIEAMKVFSDPRFNIDVLKVEVPVNVKYVEGFADGEVVYSKAEAADFFKAQEEA TNLPYIYLSAGVSAKLFQETLQFAHDSGAKFNGVLCGRATWAGSVEPYIKEGEKAAREWL RTTGFENIDELNKVLVKTASPWTDKV >gi|308151746|gb|GL476276.1| GENE 11 7029 - 7346 399 105 aa, chain + ## HITS:1 COG:SP1186 KEGG:ns NR:ns ## COG: SP1186 COG1447 # Protein_GI_number: 15901051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 105 1 105 105 154 82.0 6e-38 MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHNSQTAM LAREASGEELPYSVTMMHGQDHLMTTVLLKDVIHHLIELYKRGAK >gi|308151746|gb|GL476276.1| GENE 12 7346 - 9052 1457 568 aa, chain + ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 568 1 564 565 903 82.0 0 MHKLIELIEKGKPFFEKISRNIYLRAIRDGFIAGMPVILFSSIFILIAYVPNAWGFHWSK DIETFLMTPYSYSMGILAFFVGGTTAKALTDSMNRDLPATNQINFLSTMLASMVGFLLMA AEPAKEGGFLTAFTGTKGLLTAFIAAFVTVNVYKVCVKNNVTIRMPEEVPPNISQVFKDL IPFTVSVVLLYGFELIVKGTLGVTVAESIGTLLAPLFSAADGYLGITLIFGAYAFFWFVG IHGPSIVEPAIAAITYANIDANLHLIQAGQHADKVITSGTQMFIVTMGGTGATLIVPFLF MWICKSERNRAIGRASVVPTFFGVNEPILFGAPIVLNPIFFVPFIFAPIVNVWIFKFFVD TLNMNSFSANLPWVTPGPLGIVLGTNFQVLSFILAGLLVVVDTIIYYPFVKVYDEQILEE ERSGKTNDALKEKVAANFNTAKADAVLGKAGVAKEDVAANNNITKETNVLVLCAGGGTSG LLANALNKAAAEYNVPVKAAAGGYGAHREMLPEFDLVILAPQVASNFDDMKAETDKLGIK LAKTEGAQYIKLTRDGQGALAFVQQQFD >gi|308151746|gb|GL476276.1| GENE 13 9199 - 10605 1241 468 aa, chain + ## HITS:1 COG:SP1184 KEGG:ns NR:ns ## COG: SP1184 COG2723 # Protein_GI_number: 15901049 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 897 94.0 0 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDL ELAEKYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHNLFAECHKRHVEPFVTLHHFDTP EVLHSDGDFLNRENIEHFVDYAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPGIQY DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALEAAKDLNDFLGINYYM SDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRIAPDYVPRTDWDWIIYPEGLYDQIMR VKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKKHLEVLSDAIADGANVKGYFI WSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKVAETQVIE >gi|308151746|gb|GL476276.1| GENE 14 10628 - 10900 138 90 aa, chain + ## HITS:1 COG:no KEGG:SUB0801 NR:ns ## KEGG: SUB0801 # Name: not_defined # Def: hypothetical protein # Organism: S.uberis # Pathway: not_defined # 5 90 4 90 92 80 45.0 2e-14 MLSDTLEKVQHLFRPNFEKVYIVSFEDCPMIPELEATPLLKCGKWYVSTGKEWICHSDLE LSAFEWEFLQSLDVEIRETIHFEVNYLPFQ >gi|308151746|gb|GL476276.1| GENE 15 10921 - 11820 402 299 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 297 1 296 298 173 34.0 3e-43 MTIELKNEYLTVQFKTLGGQLTSIKDKDGIEYLWQADPNYWNGQAPILFPICGSLRNDWA IYRPQERLFFTGLIRRHGFVRKEEFILEEVNDNSVTFSIKPNAEMLDNYLYQFELRVVYT LNGKSIRTEFQVTNLEMEKTMPYFIGAHPAFNCPLVEGENYEDYYIEFSEVESCSIPKSF PETGLLDLQDRTPFLENQKILDLDYSLFSHDAITLDQLKSRSVTLRSRKSGKGLRVDFDD FPNLILWSTTNKSPFIALEPWSGLSTSLEEGNFLEDKRQVTKISPQETSRKIYDITILN >gi|308151746|gb|GL476276.1| GENE 16 11970 - 12077 59 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRQNIKLNLPQINGPTIILNQEVVNNLIFLLPDCL >gi|308151746|gb|GL476276.1| GENE 17 12257 - 12865 473 202 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 159 114 272 287 282 93.0 5e-75 MIEGTGRTTDVPIQTATMLESKGYETKMYVTAVPKIESYLGTIERYETMYADDPMTARAT PKQAHDIVVKNLPINLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLERKLNRK VSGKEIQPTLERIEQKMVQNQHQETPEFKAIQQKMESLQPPTPPIRGHWNIHTENSGRKP NNYWAIKLVVRFFCLAFSILVD >gi|308151746|gb|GL476276.1| GENE 18 12813 - 13082 244 89 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_42 NR:ns ## KEGG: pWCFS103_42 # Name: tnpR2 # Def: putative resolvase # Organism: L.plantarum # Pathway: not_defined # 1 87 107 193 195 114 78.0 1e-24 MMSVIAELERNLLADRVRKGIEASKKRGVAIGRPKIPQEKLDIAVRMYKSGDYSVKEIIE TNQISTGTFYREINRLKLRKLNKRTEQLT >gi|308151746|gb|GL476276.1| GENE 19 13079 - 13399 294 106 aa, chain - ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 1 102 1 102 185 94 43.0 6e-20 MIIGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGIKRNRPGIEQLLQTIRKGDIVVV ESISRLGRNTLDILNLIQELDQKQIQFVSLKENMNTSTPTGRPCYK >gi|308151746|gb|GL476276.1| GENE 20 13582 - 14055 178 157 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 2 155 9 164 771 87 35.0 1e-17 MKKEKIFGTFVGAPSEEQLQLYFQLTDFDKEIINEMRLPSTKLGFAVQLGTVRFLGTFFT DFSKIPLEVIIYLANQLSIDPREFDSYSRKMTISQHAQLIKERYSYRNFQDSDCQKFLYD WLLSRASHTTETTEMLSDMLLKKCLEEKILLPGVSIF >gi|308151746|gb|GL476276.1| GENE 21 14098 - 14319 122 73 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_43 NR:ns ## KEGG: pWCFS103_43 # Name: tnpA # Def: putative transposase # Organism: L.plantarum # Pathway: not_defined # 3 73 179 249 997 89 57.0 4e-17 MKQLSLIPSEEESEKLLNLLSLMGVPVQGAFTKMDILRAPLIDEGRKEITRGFHRLKEFQ QFHTSEWDFSNYP >gi|308151746|gb|GL476276.1| GENE 22 14291 - 15295 393 334 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_43 NR:ns ## KEGG: pWCFS103_43 # Name: tnpA # Def: putative transposase # Organism: L.plantarum # Pathway: not_defined # 8 296 248 536 997 307 55.0 4e-82 MNGISQTIPEGKVKHLATYAFKAKSSLIQRMSIQKKLALLVAFVYEYEKIATDELLTALI KYYESIFRRAKNKESKERLRTLKDLDRAAFTLSEIVELLLDDSIEIDCLRSRVFDQYPAE DIVNAVFQVKKLVKNEQEPIAIAELIQSYRKIRKFIALIIETLTIENGHYDEDCMAVWCL IQRRIPKPITFRQFESVENHIPKKWAYYIHYNPNEVNQSMLILGIELLIQSLNKHDIFVP KSEKFIDPMSCLISKETWEQQKESLLSQLELPSSSVEAIKQLEEDLSLSYNETVKNGPIL KWLELKNRITKIKLSCLNSEKHVKIRKISSSKIA >gi|308151746|gb|GL476276.1| GENE 23 15193 - 16554 828 453 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 13 451 324 762 771 425 45.0 1e-119 MARIEKQDNKDKIIVSKLRKTRENKEDKQFKNRVKALMPKIDLPDLLLEVNQQLDLTSCF HHINESNTRMDHLDISVLAVLLAEACNIGFSPVSKEGIESLKYDRLMYVNHQYVRLDTLS ATNKKIISAYKKLPISLVWGNNQMASADGIRYTTPQRSLYSRSNPKYFGRSRGVTFYNFV SDQYIGFHGMVVPGTLRDSLYLLDGFLNQTSGLEPKQIMTDTAGYSDLVFGLFGLLGFQF SPRIANNHGTKLWRIDLTADYKMLNEVSQNKINITRIEKNWDEILRVAGSLKSGKVNATE LTKALQRNGQPTELGKTIIEYGKVYKTKHQLRYISDEIYARQILEQLNKGEARHTLCRHI FYGKKGKLYQTYIDGMEEQLTALSIVTNAIIYWNTLYLERVIDQMRVEGFDCSEEKINKL SPLLVEHINFVGKYSFRYDPSLKNGHLRPLNTQ >gi|308151746|gb|GL476276.1| GENE 24 17018 - 17992 961 324 aa, chain + ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 305 1 309 328 177 31.0 2e-44 MCTAITYVSKDHYFGRNFDYEISYNEVVTITPRNYKFSFREVGNLDHHFAIIGIAAGIAD YPLYYDAINEKGLGMAGLNFSGYADYKKIEEGKENVSPFEFIPWVLGQCSTVDEAKKLLK NLNLVNINFSDELPLSPLHWLLADKEQSIVVESTKEGLRVFDNPVGVLTNNPTFDYQLFN LNNYRVLSTRTPKNNFSDQIELDIYSRGMGGIGLPGDLSSVSRFVKATFTKLNSVSRSSE YESISQFFHILSSVEQQKGLCDVGDEKYEYTIYSSCCNLEKGIYYYRTYDNSQITAVDMN KENLEKDSLIVYPMVETQQINYAN >gi|308151746|gb|GL476276.1| GENE 25 18437 - 18742 302 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546353|ref|ZP_04435078.1| ## NR: gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01850 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01700 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00257 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00627 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00427 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00275 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01564 [Enterococcus faecalis TX0630] hypothetical protein EF62_0880 [Enterococcus faecalis 62] # 1 101 1 101 101 173 100.0 5e-42 MKKVCAILMISASVLGMVPSNAPIFTAEINYAHENELQMNPFVIAFIDKVKQNLVLDDNY HTVKLTEAATDEKIQKLYAEATALLVKQSSVLSSEEKQIIC >gi|308151746|gb|GL476276.1| GENE 26 18736 - 19263 442 175 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546354|ref|ZP_04435079.1| ## NR: gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01851 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01699 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00258 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00276 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01565 [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX1467] # 1 175 1 175 175 263 100.0 3e-69 MLKAMRNELKKDQNQAYEEEKIKYYQQQFNELFNDSNNQMLKETITGSQLLTLFESFIEY KSERRNRDENIMNRISNLFEILNGAIVLWSNELEKKVDDLFSVREEALKETVSQSDIEQL ASDAEELDKLGVSYAYVEKITHKVKLVAKAVKFIYEMPQDTLVREISIASTKQEE >gi|308151746|gb|GL476276.1| GENE 27 19670 - 19771 65 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYGLEGAIEGVNDICLSQETKEELKAYYNSLK >gi|308151746|gb|GL476276.1| GENE 28 19858 - 20100 138 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546356|ref|ZP_04435081.1| ## NR: gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_00209 [Enterococcus faecalis TX1467] # 1 80 1 80 80 144 100.0 2e-33 MQIYAHERGNPYGCTYFISFHEIELVILLVWKDNFFTYNKQEVENNLNKMADVSTSAKRT IYQFIEKTNSLLYLSYKELH >gi|308151746|gb|GL476276.1| GENE 29 20483 - 21349 454 288 aa, chain + ## HITS:1 COG:no KEGG:Dred_0847 NR:ns ## KEGG: Dred_0847 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 5 255 6 251 269 127 35.0 5e-28 MKETVSVFMDESGKNKNEISLIGSVVVPNNFYCSKSVMELNDKLKREEISFHLTDYKKSQ LKDYLNLFDLFVSNENLLRFNVVAFKRGRFSNHMLKGKIDDMVYSKIPERSIYGSLRGYS SFTEVEANIYIEYATDYEKRGLDKLIKNQLNIHSLYRYDHFKVVKAKLIYKNTEIGLEFT DACLGVLRNIIENRDVKTTSSSKVSRTLIYKKQLVYELINRHRNFFEHIDLFELDDKGLL ERIDMRKYINLFQSKYLKEKELYGEVAEVYGDSKYHVKRKPRKIPYRQ >gi|308151746|gb|GL476276.1| GENE 30 21487 - 22083 514 198 aa, chain + ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 103 36.0 1e-22 MSIYGYSRVSTSNQDYKTQIQKLERAGAEKIFSEKYTGTKKEGRKELEELLSIVKTGDKV LVTKIDRLARSIVDLNSIISSLNNSGVTITFLDNALTFEPNKSDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLSEK >gi|308151746|gb|GL476276.1| GENE 31 22100 - 22387 252 95 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 145 97.0 4e-34 MENREKIIQLFKNPLVTGYGIEIMSNGRLYSANFQRYKNRVKKEENPLIIFESMTAKVEQ LFLELAEEVIRTNPKTKQEFKEMIKEYSYKEDNKW >gi|308151746|gb|GL476276.1| GENE 32 22381 - 22605 226 74 aa, chain + ## HITS:1 COG:no KEGG:EF_C0011 NR:ns ## KEGG: EF_C0011 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 69 64 45.0 2e-09 MVVRKTYDHWGIEISTWNKSNIVTFIDCDCGQLAKRELGKYNQFKCDSCNKEYKLYQGNY IAIDEKINEVAQND >gi|308151746|gb|GL476276.1| GENE 33 22665 - 22874 141 69 aa, chain + ## HITS:1 COG:no KEGG:EFA0075 NR:ns ## KEGG: EFA0075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 14 82 82 116 94.0 3e-25 MNFGYLNFGTKDAVLVIAIFIILILTVLFRWSALEFVFSSGAVGIAFFAGNMKQDKRISD RQNKKIDKR >gi|308151746|gb|GL476276.1| GENE 34 23216 - 23488 103 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229548470|ref|ZP_04437195.1| ## NR: gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] # 1 89 1 89 108 130 100.0 5e-29 MGIFTNFSDFLEERRKKKHDKIRKKAEAMKRQGKSPVKKGWGTMVDTGSGGINKNPIDRV YDIGQQQKNLSSKSDEKNKFSEYQKIKKRS >gi|308151746|gb|GL476276.1| GENE 35 23521 - 23958 282 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546363|ref|ZP_04435088.1| ## NR: gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01860 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01963 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9503_00637 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00437 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00285 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01574 [Enterococcus faecalis TX0630] # 1 145 5 149 149 257 100.0 2e-67 MKFKSVLFLFLASIILFGFSQQTNAESQESNVTPSQESYAHDVLNEQLSSNLSTTDAIQQ RAAYAPSTWYYTTYRSYVGYPPATIYVSVENTAVKRRSHGYLTLISTGYAPGNWRTYAGT LYLQGGPYPIPSSLKATDLLVKQDN Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:14:13 2011 Seq name: gi|308151745|gb|GL476277.1| Enterococcus faecalis TX4000 genomic scaffold Scfld58, whole genome shotgun sequence Length of sequence - 7622 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 56 - 115 4.5 1 1 Tu 1 . + CDS 146 - 238 59 ## + Term 428 - 487 16.5 - Term 422 - 470 15.1 2 2 Op 1 2/0.000 - CDS 477 - 2024 2224 ## COG0513 Superfamily II DNA and RNA helicases - Prom 2208 - 2267 4.5 - Term 2166 - 2198 1.1 3 2 Op 2 6/0.000 - CDS 2327 - 3700 1762 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 4 2 Op 3 . - CDS 3779 - 4849 1294 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 4907 - 4966 7.0 5 3 Op 1 . - CDS 4990 - 5436 545 ## COG1671 Uncharacterized protein conserved in bacteria 6 3 Op 2 . - CDS 5433 - 6461 1095 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 6487 - 6546 6.9 - Term 6490 - 6553 18.2 7 4 Tu 1 . - CDS 6555 - 7565 1038 ## COG0524 Sugar kinases, ribokinase family Predicted protein(s) >gi|308151745|gb|GL476277.1| GENE 1 146 - 238 59 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYDFNFSAKKVTSLRPIYFYFVALHISNLL >gi|308151745|gb|GL476277.1| GENE 2 477 - 2024 2224 515 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 592 69.0 1e-169 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML NKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRP HIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLF SATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPE LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK RMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKT VAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNRNRNRGGNGKGGSYRGNKNHKD GDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK >gi|308151745|gb|GL476277.1| GENE 3 2327 - 3700 1762 457 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 426 49.0 1e-119 MKLTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGENDGHRFIESAMA NGCQAAFWGQDLVDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQVI TFGFSQESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTD SEIQKGLATAELTKNRTEWLKAANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVL GDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAPANIHSFKKEEK NELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK >gi|308151745|gb|GL476277.1| GENE 4 3779 - 4849 1294 356 aa, chain - ## HITS:1 COG:SP1671 KEGG:ns NR:ns ## COG: SP1671 COG1181 # Protein_GI_number: 15901506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 351 5 343 347 387 55.0 1e-107 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE VLHLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVG AGVLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKP ANMGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS KNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFKQRQEFYNN >gi|308151745|gb|GL476277.1| GENE 5 4990 - 5436 545 148 aa, chain - ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 146 4 147 152 140 47.0 8e-34 MKIFVDGDGSPVKETVIEVAVEKALDVVIVTSVDHYSLKDYPENVSFVYVDKGADAADFK IVQLIKKGDFLITQDYGLASLVLPKGVSVLHQLGYQYTKENIDGLLEQRYFSGQIRRKGG RTKGPKPFTDKDRTTFKQALIELVERSL >gi|308151745|gb|GL476277.1| GENE 6 5433 - 6461 1095 342 aa, chain - ## HITS:1 COG:aq_1026 KEGG:ns NR:ns ## COG: aq_1026 COG0187 # Protein_GI_number: 15606321 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Aquifex aeolicus # 16 328 23 368 792 85 23.0 2e-16 MSVAHLLTVLENDEFIERIQKRPEAFIGTTGLVGLENLLVQTINGLLEFFIEKNQGKIAI QLSRQQISFQVSSTRPLVFEQKQVDLEPPFLYLSVLQAFSKQVGISIDQEKQRTIFIYHQ GQLKKRLLLPIEETQERIEVLFWPDTQIFGTESLSYMRVLQQCQQIAMLNPGLKILLTQE EEQKNLCYYPKGLSNYLFEKDNPLTRKAAPIIQAKQTELALVQFILSKNHAPQVQKTFVN GHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYSLSVTADSFLAEFDFVLAITIPKPRYTDA TKTILRNTELYEVVKEVVFDELQHYFQRHPKWLEQGRSEGNE >gi|308151745|gb|GL476277.1| GENE 7 6555 - 7565 1038 336 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 323 1 325 339 154 31.0 2e-37 MKIAAFGEVMLRFTPPEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRL GEAGKAALRKLGISDQWVGEKGGHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD FEAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALF MRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTT RSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTF ATVNGVLAHTIQGDIPLTTVKQVNHVLEHPNLDLIR Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:14:23 2011 Seq name: gi|308151744|gb|GL476278.1| Enterococcus faecalis TX4000 genomic scaffold Scfld59, whole genome shotgun sequence Length of sequence - 15397 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 4, operones - 2 average op.length - 7.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 39 - 98 7.0 1 1 Op 1 . + CDS 221 - 2263 825 ## COG3711 Transcriptional antiterminator 2 1 Op 2 . + CDS 2274 - 2891 668 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 3 1 Op 3 13/0.000 + CDS 2938 - 3396 497 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 4 1 Op 4 10/0.000 + CDS 3444 - 3722 371 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 5 1 Op 5 . + CDS 3747 - 5114 1160 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 6 1 Op 6 . + CDS 5129 - 6274 1282 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 7 1 Op 7 . + CDS 6298 - 6789 517 ## LAC30SC_10580 hypothetical protein 8 1 Op 8 . + CDS 6786 - 7322 392 ## COG0406 Fructose-2,6-bisphosphatase + Term 7345 - 7383 3.0 - Term 7333 - 7369 3.2 9 2 Tu 1 . - CDS 7391 - 7594 72 ## gi|256617134|ref|ZP_05473980.1| predicted protein - Prom 7624 - 7683 2.4 10 3 Tu 1 . - CDS 7720 - 8454 420 ## COG2801 Transposase and inactivated derivatives - Prom 8685 - 8744 4.7 + Prom 8921 - 8980 6.5 11 4 Op 1 5/0.000 + CDS 9026 - 10984 671 ## COG3711 Transcriptional antiterminator 12 4 Op 2 8/0.000 + CDS 10977 - 11429 362 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 13 4 Op 3 7/0.000 + CDS 11431 - 11742 560 ## COG1445 Phosphotransferase system fructose-specific component IIB 14 4 Op 4 . + CDS 11760 - 12860 989 ## COG1299 Phosphotransferase system, fructose-specific IIC component 15 4 Op 5 . + CDS 12860 - 13525 511 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 16 4 Op 6 1/0.000 + CDS 13596 - 14243 706 ## COG0176 Transaldolase 17 4 Op 7 . + CDS 14317 - 15126 881 ## COG0149 Triosephosphate isomerase + Term 15253 - 15295 7.1 Predicted protein(s) >gi|308151744|gb|GL476278.1| GENE 1 221 - 2263 825 680 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 523 3 525 536 218 27.0 4e-56 MNKRIREILKMIIKNPEMKLSALTSELDLTRRQINYAINQFNEDLEMKNIPTIQRSHSGD ITVPIEVIQMMSQLDQETVDEQATLALTEGERGALIVMTLITNIEYVSLDHLLDIVEVSK TTIMDDIKRTDALLRNYSLTIQYDRINGYQLAGSEHRILQLLSDLVKQCPIFRRETIRGK LVHGVTEEEIVHLVHNMEQMLHLSYSDESVDYLQTAARFLVSRGIKVSTKPDFFPGEVSN TPEYRMLTILVGETAWNLSKSYLEWFTLLFLTSNIFESKTTQNYDSDQDLRKLISQMVEN FQNQTLIMIDDREDFERRILSHLRPACFRIRFNLSLGVYSVDSLIKDSNHAILIDLMKEL IIPIENWLNKAFPNDELDLLSYYFGYQLSSHNKLNKQRPRAVVVCTNGVMVSKLVRANME KLFPEIHFLASLSVRDFYKFEVDYDLVFTTTPLNSAMMQFIIDPIMTYQEQISLRYRVLS DLGITKVDRALDELLKIVKKYATVNDQASLREELQYFLVKQDESTPLDNFQVLPSLTHYL RPNYVQVIDQEMTWEEAVSLACQPLLDHQIIDSRFINDCVNQIKQPGYAGYLGMRTCIPH TTVDKGVINDGVSIMVCQKPVIFPNGEAISLILPLSFFDLTKHLRAINQIADIAKDDSLI DQLVASADEKTIYQLLRQSS >gi|308151744|gb|GL476278.1| GENE 2 2274 - 2891 668 205 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 37 202 42 206 210 100 35.0 2e-21 MKLADYPRFTVIMRGYTFDQADAILQAMQEFDHQFAVEMTMNTEGAIDHIRELNKRYGDT TYIGAGTVRTLEQAKACYEAGAKFLLGPHMFTEEMLAYANEKGVLAVPAAMTPSEVNQMF AQGADIVKVFPAAVVTPRFFKDIQAPLGKLPLMGVGGISKENAKEFFENGASYLGLGSGM FNKQDIEELNVKNLAQSMKELLAAI >gi|308151744|gb|GL476278.1| GENE 3 2938 - 3396 497 152 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 2 147 3 148 160 94 31.0 1e-19 MELYLNEELVFRNVEASTDSEVLAYLAGELYQKGYVKEEYIQAIQDREKEYPTGLPSTPP GIAIPHANYEMVNKTTLAIATLKEPVLFHNMEDNKAQLPIQIVIMMAIGEPHGQVEMLQK IVGIIQDEPLRQEMIDARNDTELLALLKKAVF >gi|308151744|gb|GL476278.1| GENE 4 3444 - 3722 371 92 aa, chain + ## HITS:1 COG:STM3783 KEGG:ns NR:ns ## COG: STM3783 COG3414 # Protein_GI_number: 16767067 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 2 92 3 92 95 73 42.0 1e-13 MKRILVACGNGIATSTVVATKVKEYLQEHGVEVATTQTKLMEVPGKVEGYDLLVTTGQFD GQTGNVPVVKGMPILTGIGADKTMEEILNLLK >gi|308151744|gb|GL476278.1| GENE 5 3747 - 5114 1160 455 aa, chain + ## HITS:1 COG:Z4877 KEGG:ns NR:ns ## COG: Z4877 COG3775 # Protein_GI_number: 15804015 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 EDL933 # 4 435 18 453 462 310 39.0 3e-84 MKIIMNVFNFFIDAGPTVMLPVIITIIGLIFGLKITRAFKSGLTLGIGFAGIKLILDFMT TNVGPAAKAMVERTGVKLDALDVGWGSIAAVTWASPIIPILIFAILLVNIVLLVLKRTHT LDVDIWNYHHMAIVGVMVYFVTKNVFLGVGASVVMAIVTFKISDWSQPMVESFFGIPGVS LPTVSALSSLVIAWPLNWLLDRIPLFRKSKFTIKDAQKYLGFFGDSMIMGLVIGMVIGAL AGYDIKAVLQLGVSMSAVLVLIPKMTSLFMEGLMPISDAAQKWSQEKFKGTRLFIGLDAA VVVGNPDVITTALIIIPLTIAMALVLPGNRVLPFADLAVVPFRVAMVVALTRGNLLKNIV IGLVITASLLWCGSATSPMLTAIAKSVGIDLGTSSMLISSFAATSMIQSYLVFIAFAYKP IIGIPVLLLVLAGVWYYFDGVKKVNREMNEPVEAQ >gi|308151744|gb|GL476278.1| GENE 6 5129 - 6274 1282 381 aa, chain + ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 455 55.0 1e-128 MKISDITVYKVKPRWIFVKISTDEGIDGWGEMISGTKTETVVAGAYEIGNRLIGRNPFEI ERLFQEMHRSFFRGGPINGTIVSGLEMALWDIKGKAFNVPVYELLGGAARDNIKVYSWIG GDRPSEVAEQAQDRFDRGFTAVKMNATEELHYIDSYKKVDEVVERVASIRERFGDAMDIG VDFHGRVHKPMAKVLAKALEPFHPMFLEEVVLPENEEHYKEVADAVAVPLATGERLYTRW QFKNIFKQGAIDIIQPDVALCGGILETRKIAAMAEAHDMAVAPHAPYGPVALAATLQVDS CTPNVFIQEQSLGIHYNKGFDLLDFVKNKEVFQYKDGYVDLPSKPGLGLEMDEDRIKEIS QEGLVWTNPQWKNYDGTIAEW >gi|308151744|gb|GL476278.1| GENE 7 6298 - 6789 517 163 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_10580 NR:ns ## KEGG: LAC30SC_10580 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 146 1 148 151 97 38.0 1e-19 MAEALVIAGFLGLLVVLQVKDQKKIIVAAQTSWIRMGLSIALTVAILVIFWPSNLADQIK LGAFAAIILINGFLKEGLSQEGVVKLGVLNGEFARYPQIQIEELAGGNSFVSFYKSKNNS FSLVFGKSQAEMVAALQQLATDSELVLGEMADEKRPLAKGSAR >gi|308151744|gb|GL476278.1| GENE 8 6786 - 7322 392 178 aa, chain + ## HITS:1 COG:ML1452 KEGG:ns NR:ns ## COG: ML1452 COG0406 # Protein_GI_number: 15827761 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 6 148 10 166 224 80 35.0 2e-15 MIYVARHGQTQYNVDGKICGHADIELTEVGYAQAEELAQLVSDLEQPITKIYVSPLRRAQ ETARIINEKVSVPIEVEPRLIEMDFGQYDGLPIETPEFQKVRVEFSLPLPDGESIMDVAG RVYPLLAELEQSDEDVLLVCHNALIRVIDNYFHGKTMIDFLKFNVDNTQLLRYERKRY >gi|308151744|gb|GL476278.1| GENE 9 7391 - 7594 72 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617134|ref|ZP_05473980.1| ## NR: gi|256617134|ref|ZP_05473980.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0630] # 1 67 44 110 110 133 100.0 4e-30 MRRSKHSILLVDEHKFDSPHFYKIADFADSHSVITNTLPTEDYQKRIDDGITDFIWLNPK LRSQPNE >gi|308151744|gb|GL476278.1| GENE 10 7720 - 8454 420 244 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 243 1 250 512 149 37.0 4e-36 MFSHEERVKAIQLFLKYDCSYAATIRKLGYPSVGALRQWYKEYLVSGELHQELRKKSKYS EEQKRVAVNHYFEYGQCYARTIRMLGYPNKGSLRQWCEELAPGARKLRKSAVKLTKDQKE DVLKKFYKPQTNRKGLAEAEGISRVALYQWKATYLGKDFPLPMTSKNQGKQKELLLKEVE ELQEQVHQLQLEKALLEGAAELLKKGKGINLLRLSNQEKTLLIDALRNQFNLKDLLQQLQ LSKI >gi|308151744|gb|GL476278.1| GENE 11 9026 - 10984 671 652 aa, chain + ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 4 493 3 496 700 147 24.0 9e-35 MHEISKRQHKLLRLLLEQKDFLPVNHFSKILSISDRTLYKDIDELNKALKKRKIEILKRQ GKGIFLSKSDLSNDEILKIFGEASTQIDFNQLPLERQIKMAEYLLLRNKKVSYQLLSDEF LVSRTSISNDLDQIQTVIEGSSVTIRSDNNGTKVNGNESEIQKAIKQYAYFIIDKSDLTN SYRVQFPSLLFSFLPKDIIKKVSGLLQTNDHFNIDKLSDDHFQSLVLSISIFVLRLQEGF HIEYQDNFLFENVESLKTFFLANELVENLELDNSIKLDSNDFEYFNRQLVAHGFEPRLRD LAIQKEYDAVVRKMIQKMSDSIQVDLTRDEKLYMNILYHLVSMIYRSKLNVPVSNPLLEE IKREYSVLYSTTWLILAGIEKELDIRLTDDEVAFMMIHFQGAIDRLSANRKILIVCPTGI GTSELIANRLKRVFSPQDIVEVVSLRTLYKRDLNKIDLVISSVQLEKIDVPVTYVSPLMS KQDLKKVSATYLDLFYEEEVNDQPFEHLGKIIDSDLIFLNETVATKEQCIKRITQKLLQN DFVTDSFEQAIWDREKLGVTDLPIGAAIPHPSPSTVKESKLVIMTLVKPIRWNFRMINTV LMICVAEKDLKHIKGILSEIYRIVETKKNIDRFIFSKDEEEIVKVLGGQTID >gi|308151744|gb|GL476278.1| GENE 12 10977 - 11429 362 150 aa, chain + ## HITS:1 COG:lin0446 KEGG:ns NR:ns ## COG: lin0446 COG1762 # Protein_GI_number: 16799523 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 137 6 144 154 88 36.0 6e-18 MIDEGLIVLDSALTNKKSIIHYLSEKAKEFGYLKNSANYIKAVNKREEEFSTAIGYDVSI PHGKSKEVINPFICFLRTNQPIQWDTNGNTVELVFMLGIPEENKTTFHLKVLAEISKKLL DEGFRNDLLTGSKESILDSLYQVEKKIGGI >gi|308151744|gb|GL476278.1| GENE 13 11431 - 11742 560 103 aa, chain + ## HITS:1 COG:STM4113 KEGG:ns NR:ns ## COG: STM4113 COG1445 # Protein_GI_number: 16767378 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Salmonella typhimurium LT2 # 2 95 3 96 106 88 48.0 2e-18 MKIVGVSACPTGVAHTYMAQEALEKEGKKRGHEIKIETQGSIGIENEVTEEEAEEADVVI LAVSVFIENEERFEDKLVLNADVNDAISYPAKVLDAAEKLVNG >gi|308151744|gb|GL476278.1| GENE 14 11760 - 12860 989 366 aa, chain + ## HITS:1 COG:BS_yjdD_2 KEGG:ns NR:ns ## COG: BS_yjdD_2 COG1299 # Protein_GI_number: 16078266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus subtilis # 10 349 8 350 367 226 44.0 5e-59 MNIKATLKEVQKSFLSGVSFMMPAVVAGGIMLAISLATGEKSDTGVVVTNELMQNINLLG KAAFAMMIPILGGYIAYSIAGKPGLAPGMILGFLANNPVTVNDVEVKSGFLGAMLLGVAA GYLVKWMKKWKVSKTIKTILPILIIPTISVFILGLIYIYVVATPLAFLMNGLTSIMSSLN GSSAILLAVFIGLFGEVDMGGPITKSVSMFTLALMNEGIYEPNGMFRIAVAIPPIGIFLA TLFFKKKFTEGDRDAAVAAGIMGCIGITEGAIPFVVSDMKRILPSTMIGTAVGCVIGAIG NVKCYVPHGGFVVLPVVDNKLWFIAAIIIGSLVTALILGFLKPALEETPAKKKNKSQVAD LTKEKA >gi|308151744|gb|GL476278.1| GENE 15 12860 - 13525 511 221 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 9 211 10 206 210 117 32.0 2e-26 MKLEMNDFIEKNKVIAICRGTYGEKLINLVSALNDGGVKLVEVTFDQGDPECLTKTPKAI ASLVKEFGNEVKIGAGTVLSIEQVEAAHQAGAEYIISPNTNSSVIKRTKELDMVSMPGAL TPSEIISANEAGADFVKVFPVRALGIGYIKDILGPINHIKLVATAGVTPDNLQDYLDLGF SGAGISGYLTDKRLIDTGDFATITKHALEMMSIVRENNVSN >gi|308151744|gb|GL476278.1| GENE 16 13596 - 14243 706 215 aa, chain + ## HITS:1 COG:lin0361 KEGG:ns NR:ns ## COG: lin0361 COG0176 # Protein_GI_number: 16799438 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 215 1 215 218 341 80.0 7e-94 MKFFLDTANVDEIKRINELGLVDGVTTNPTIIAKEGRDFEEVIKEICSLVDGPVSAEVTG SQAEEMIAEAEVLAKWARNVVVKIPMTEQGLKAVNTLSKKGIKTNVTLVFTVAQGLMAAK AGATYISPFLGRLDDIGTDSMALIKNLRKVLDNYGYKAEIISASVRGLEHVEKVAELGAD IATIPGNLFPKLWSHPLTDKGIEQFEKDWVAFSNR >gi|308151744|gb|GL476278.1| GENE 17 14317 - 15126 881 269 aa, chain + ## HITS:1 COG:lin0364 KEGG:ns NR:ns ## COG: lin0364 COG0149 # Protein_GI_number: 16799441 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Listeria innocua # 4 268 2 253 254 168 35.0 9e-42 MEQRKPIVIMNWSMRQNLISEAEEYAVDVLNHQSENHKVEVVLLPSMGTIHQVSKVLTGS QFAFGAQNMAEIDQGELSGEFSIQSLVDMHGKFVELGHWERRKLYNETDETINKKVKLAL AYDISPIVCIGEIEEKDANNVIDEIKNPNYVQELKEELFLRIFNALYQIDRDKLKKIVIA YTPAWAVGKTKAASAPHISRAVAIIRNSLTELFGKDADNIRVVYGGTVSPENTKTMLDLA DLDGVLLGRFGSDPERLQQTIEVVEQIRC Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:14:34 2011 Seq name: gi|308151743|gb|GL476279.1| Enterococcus faecalis TX4000 genomic scaffold Scfld61, whole genome shotgun sequence Length of sequence - 4363 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 63 - 122 10.2 1 1 Op 1 . + CDS 165 - 1478 1495 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 1488 - 1530 5.0 2 1 Op 2 . + CDS 1555 - 1803 158 ## EF0835 hypothetical protein 3 1 Op 3 . + CDS 1812 - 2900 1279 ## COG3589 Uncharacterized conserved protein 4 1 Op 4 1/0.000 + CDS 2909 - 4018 1292 ## COG3964 Predicted amidohydrolase 5 1 Op 5 . + CDS 4008 - 4362 347 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|308151743|gb|GL476279.1| GENE 1 165 - 1478 1495 437 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 437 1 442 444 293 42.0 5e-79 MNGFVQWMEVKLMPIANKFGSQRHMTAIRKGLIATMPLTIVGSFFTIFQNIPIEAYTKLI EPYQAILDIPSRYTMGLLALYATFGIASSLAKSYKLDSLTCGILALMAFLVTAAPPTRVF EDVDNVITAGRYINLANLGSASLFGAIVTALLSVEIYRFFIEKDIMIKMPDGVPPEVSNS FIALIPGAVILLLFWVIRHVIGFDLNGFLSTLLMPLKGILAGNSLFGGLLTVFLICFFWV LGIHGPAIMGPVIRPFWDMSIAENLEAFTNGANVHQLPNIFTEQFLQWFIWIGGAGTTLS LVVLMMFSKSTYLKSLGRLSFLPGLFNINEPVIFGTPIVMNPILGIPFIVAPLITTTLSY FLTVANIIPMMAARLAFAIPAPIAAWMSTNWSFSAAVLVIVNFLITMAIYYPFFKVYEKQ QLDKEAEELVAEQAAKN >gi|308151743|gb|GL476279.1| GENE 2 1555 - 1803 158 82 aa, chain + ## HITS:1 COG:no KEGG:EF0835 NR:ns ## KEGG: EF0835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 82 11 82 82 114 98.0 2e-24 MIIWFIFFFIVSQIIIEKGQLPTVVYQLGLVKTLVFTAVCITLSMIIGGFLNQPVLLVGS TTILCSSVIAWKFRNKFENSGV >gi|308151743|gb|GL476279.1| GENE 3 1812 - 2900 1279 362 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 361 4 361 364 330 46.0 2e-90 MKRALGVSVYPDHSDINQDKAYLKKASECGFTRIFMSMLEVTDGKEAVQKKFKELISYAK NLGFETILDVVPSIFDELEISYDDLTFFSELGADGIRLDTGFDGNKEAMLTFNPFGVAIE LNMSNDVAYLDNILTYEANRPFLYGCHNFYPQAGTALPYDFFEKCSIRFKKEGIRTAAFI SSQVGEIGPWDVNDGLPTLEMHRQLPVTVQAKHLFATNLIDDVVIGNAYASNEELEALGQ LNRYQTELTIVFEEATSEIEKEIVTKNQHFRRGDITQQMIRSTEVRKKYKNEANPPHDNQ AMLQPGDVVVGNDAFGKYKNELQVVLEPHQDSRKNRVGRIIEEELVLLEFIKPWTKFRFI EK >gi|308151743|gb|GL476279.1| GENE 4 2909 - 4018 1292 369 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 3 367 2 364 377 340 45.0 3e-93 MDYDLLIKNGQTVDGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVH CFEKMALYYDYPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGI VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQE IPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVF DIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPE IIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKT IIGGQIYDN >gi|308151743|gb|GL476279.1| GENE 5 4008 - 4362 347 118 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 5 118 5 118 372 105 50.0 2e-23 MTISYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSEFSVQTGAFLADL LKVEDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYTEKIEQREIVLPKGHNVDYGTP Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:14:49 2011 Seq name: gi|308151742|gb|GL476280.1| Enterococcus faecalis TX4000 genomic scaffold Scfld62, whole genome shotgun sequence Length of sequence - 42493 bp Number of predicted genes - 46, with homology - 44 Number of transcription units - 21, operones - 15 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 83 - 133 16.3 1 1 Op 1 3/0.000 - CDS 160 - 864 830 ## COG3527 Alpha-acetolactate decarboxylase 2 1 Op 2 . - CDS 876 - 2528 1992 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 2563 - 2622 7.7 + Prom 2679 - 2738 6.4 3 2 Tu 1 . + CDS 2806 - 3717 1142 ## COG1316 Transcriptional regulator + Term 3721 - 3769 7.2 - Term 3704 - 3762 17.6 4 3 Tu 1 . - CDS 3770 - 5113 1959 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 5237 - 5296 9.8 - Term 5179 - 5238 8.4 5 4 Op 1 9/0.000 - CDS 5298 - 5990 470 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 6 4 Op 2 . - CDS 5971 - 7521 1646 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 7542 - 7601 8.8 + Prom 7584 - 7643 6.7 7 5 Op 1 3/0.000 + CDS 7669 - 8994 1496 ## COG3493 Na+/citrate symporter 8 5 Op 2 . + CDS 9026 - 10195 1523 ## COG0281 Malic enzyme + Term 10208 - 10256 14.1 - Term 10194 - 10242 14.1 9 6 Tu 1 . - CDS 10269 - 11117 898 ## MPTP_1291 Cro/CI family transcriptional regulator - Prom 11348 - 11407 10.6 + Prom 11134 - 11193 9.1 10 7 Tu 1 . + CDS 11217 - 11279 231 ## + Term 11309 - 11348 7.5 - Term 11559 - 11604 8.0 11 8 Op 1 7/0.000 - CDS 11618 - 11923 530 ## COG3906 Uncharacterized protein conserved in bacteria 12 8 Op 2 6/0.000 - CDS 11961 - 12383 502 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 13 8 Op 3 . - CDS 12380 - 12649 456 ## COG4472 Uncharacterized protein conserved in bacteria - Prom 12793 - 12852 11.1 14 9 Op 1 12/0.000 + CDS 13085 - 13837 815 ## COG2966 Uncharacterized conserved protein 15 9 Op 2 . + CDS 13852 - 14343 418 ## COG3610 Uncharacterized conserved protein + Term 14355 - 14402 5.1 - Term 14343 - 14389 9.5 16 10 Op 1 7/0.000 - CDS 14395 - 15261 910 ## COG3689 Predicted membrane protein 17 10 Op 2 . - CDS 15280 - 16194 914 ## COG0701 Predicted permeases - Prom 16219 - 16278 6.6 - Term 16326 - 16381 12.2 18 11 Op 1 . - CDS 16405 - 17211 1056 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 19 11 Op 2 . - CDS 17268 - 18122 666 ## EF1196 hypothetical protein 20 11 Op 3 4/0.000 - CDS 18122 - 19429 1022 ## COG4863 Uncharacterized protein conserved in bacteria 21 11 Op 4 8/0.000 - CDS 19429 - 21258 2060 ## COG5002 Signal transduction histidine kinase 22 11 Op 5 . - CDS 21265 - 21969 1015 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 22069 - 22128 6.6 - Term 22071 - 22137 15.9 23 12 Tu 1 . - CDS 22143 - 22808 930 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 22900 - 22959 6.0 - Term 22899 - 22961 19.0 24 13 Op 1 . - CDS 22962 - 23822 1093 ## COG1307 Uncharacterized protein conserved in bacteria 25 13 Op 2 . - CDS 23815 - 24384 751 ## EF1190 hypothetical protein - Prom 24405 - 24464 7.3 - Term 24456 - 24509 9.6 26 14 Op 1 3/0.000 - CDS 24511 - 25149 507 ## COG4478 Predicted membrane protein 27 14 Op 2 1/0.167 - CDS 25152 - 25922 1076 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 28 14 Op 3 2/0.000 - CDS 25928 - 26557 856 ## COG4470 Uncharacterized protein conserved in bacteria 29 14 Op 4 . - CDS 26592 - 27974 1423 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 28001 - 28060 5.3 - Term 28033 - 28083 13.0 30 15 Op 1 9/0.000 - CDS 28099 - 29787 1987 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 31 15 Op 2 3/0.000 - CDS 29818 - 30690 926 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 32 15 Op 3 . - CDS 30724 - 31791 1164 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 31972 - 32031 8.3 + Prom 31910 - 31969 8.5 33 16 Op 1 . + CDS 31998 - 32456 698 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 32472 - 32522 10.4 34 16 Op 2 . + CDS 32540 - 33274 889 ## COG0778 Nitroreductase + Term 33281 - 33331 19.2 - Term 33264 - 33324 24.5 35 17 Op 1 . - CDS 33332 - 33580 479 ## EF1180 hypothetical protein - Prom 33607 - 33666 4.6 36 17 Op 2 . - CDS 33671 - 34549 1130 ## COG1940 Transcriptional regulator/sugar kinase - Prom 34619 - 34678 5.7 - Term 34722 - 34767 7.6 37 18 Op 1 . - CDS 34776 - 34988 211 ## EF1177 hypothetical protein 38 18 Op 2 . - CDS 34981 - 36045 759 ## EF1176 hypothetical protein - Prom 36078 - 36137 3.9 - Term 36130 - 36183 5.7 39 19 Op 1 . - CDS 36184 - 36594 381 ## COG0615 Cytidylyltransferase 40 19 Op 2 . - CDS 36647 - 37240 312 ## EF1174 hypothetical protein 41 19 Op 3 1/0.167 - CDS 37241 - 37987 454 ## COG1922 Teichoic acid biosynthesis proteins 42 19 Op 4 . - CDS 37977 - 39014 422 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 39245 - 39304 11.1 + Prom 38731 - 38790 10.8 43 20 Tu 1 . + CDS 38918 - 39136 92 ## - Term 39331 - 39375 11.2 44 21 Op 1 9/0.000 - CDS 39406 - 39705 532 ## PROTEIN SUPPORTED gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 45 21 Op 2 1/0.167 - CDS 39775 - 41049 1313 ## COG1158 Transcription termination factor 46 21 Op 3 . - CDS 41064 - 42356 1719 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 42406 - 42465 6.5 Predicted protein(s) >gi|308151742|gb|GL476280.1| GENE 1 160 - 864 830 234 aa, chain - ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 6 234 5 234 234 233 51.0 2e-61 MSEQYVYQHGTLGGLMESLMAGTAEIGTLLTQGDFGIGTLEGSNGEIILLDGTLYHANQT GEITILEGEELTPYAAVTRFQEDGAFPVSTETDENIKAQILEKISPNFFAAIKISGLFAK MHVRVAPKQEKPYPPFVEAARNQPEFTAENIQGTVVGFFTPKLFHGASAAGFHLHFISED HQFGGHILDFGIKQGTVSWMETAELRQHFPVHDADYRNKEIDIAKALSAIEEAE >gi|308151742|gb|GL476280.1| GENE 2 876 - 2528 1992 550 aa, chain - ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 5 547 8 551 554 695 64.0 0 MSKKGSDIIVESLINHEVPYIFGIPGAKIDGVFDALVDKGPELILARHEQNAAFMAQGIG RLTGEPGLVIATSGPGASNLATGLVTATAEGDPVLALAGQVKRSDLSKLTHQSMNNAALF SPITKFSTEIQDPETLSENIANAYRIAKTAKKGATFLSIPQDVTDSPVTGEAIKPLSAPK LGHASAETIAALAERIKQAKLPVLLLGMRASARKVTAAIRELVAITGLPVVETFQGAGII SKELEEHFFGRVGLFRNQPGDRLLKRSDLVIAIGYDPIEYEARNWNAEKDARVIVIDEVQ MEIDQYMQPEEELIGDMSKNILKLSEAFSEPILTEDAQDYLETLQEKLTIKEVKTSTIEN RLHPLEIVQTLQEKTTNEMTVTVDVGSHYIWMARHFRSYEPRHLLFSNGMQTLGVALPWA ISAALVRPNTQIISVSGDGGFLFSAQELETAVRLKQNIVHIIWNDGSYDMVKFQEEMKYN RSSGVDFGPVDFVKYAEAFGAKGVRVHSQTEFAAALEEGMQTEGPVIIDVPVDYSDNQEL GKTLLPDQLY >gi|308151742|gb|GL476280.1| GENE 3 2806 - 3717 1142 303 aa, chain + ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 22 300 24 304 306 247 43.0 2e-65 MSKGKKIFAIIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYETVERSKKSQVNLNNKEPF SVLLLGIDTGDDGRVEQGRSDTTIVATVNPRDKQTTLVSLARDTYVDIPGQGKQDKLNHA YAFGGASLAMDTVENYLNIPINHYVSINMAGLKELVNAVGGIEVNNNLTFSQDGYDFTIG KISLDGEQALSYSRMRYEDPNGDYGRQERQRKVIEGIVQKVLSLNSVGNYQQILTAVSDN MKTDLSFDDMKKIALDYRSAFGKVKQDQLQGTGFMQDGVSYQRVDEQELTRVQQELKNQL NTK >gi|308151742|gb|GL476280.1| GENE 4 3770 - 5113 1959 447 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 445 1 445 454 363 45.0 1e-100 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA DFFFQPAFDKPWNIINTAALEAVKQER >gi|308151742|gb|GL476280.1| GENE 5 5298 - 5990 470 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 1 229 1 223 226 185 44 3e-46 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTAATIAEGLQLTKEKQPALVLLDVHLKDGN GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK TAQFTLETKELSQTKVDQLFHSSQTNARKNEQDLQNMSLEKGLTQATLQLLLKKIDEFTD YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYRRI >gi|308151742|gb|GL476280.1| GENE 6 5971 - 7521 1646 516 aa, chain - ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 509 1 507 513 328 36.0 1e-89 MKRGGKLWCFLSVIFIATLIIMITFFYGVTTVQTIKEVRKNQEQALLAVGEQLAIEPNVI EALKNDHYSDELEAYTVRLGEIHQLDFIVIMNMQGIRLTHPDRQKIGKHFEGGDEVRALK GEEHLSVSQGSLGESLRGFVPVYDQGKQIGVVAMGIKMTSLSQLIERTKNDYTVSVLLSV GFGFILAIVVSYYLKKQLHDLEPREIARLLEERNAMLEETKDAILVIDTDQNILLANIEA TKMYHNITNSEENLLGKKLSALVLSPEKLVVHSKTEQFYRQNGQDYFVSIAPINVRKRTI GHVIFLKNATETFIVAEQLVSTTTYASALQSQSHEFMNKMHVIYGLVDLEDYEALKHYLA DLLKPEKEFAQRLAILVRNPILAGFLSGERIKFAEIKTQLAIEIYPEIPPNKRDEDTQNL IAIYRYIHRFLMEQTLPEEIIETIDYQPGSLTTTYSFAYPKEQLERFEQEFFTSYLARLL ENAEATLTWENQQNNWLVIRINVHYEGAEENEPIDY >gi|308151742|gb|GL476280.1| GENE 7 7669 - 8994 1496 441 aa, chain + ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 15 441 20 442 443 616 79.0 1e-176 MEKKLHATAANETDWRNKLTKTRIGSVTLPVYLVTASIILVTALLEQLPVNMLGGFAVIL TMGWLLGTIGGNIPILKHFGGPAILSLLVPSIMVFFNLLNQNVLDSTDILMKQANFLYFY IACLVCGSILGMNRKILVQGLMRMIVPMALGMILAMGVGTLVGTLLGLGWKHSLFYIVTP VLAGGIGEGILPLSLGYSAITGLPSEQLVGQLIPATIIGNFFAIMCSGLLSRLGEKRPEL SGQGQLIKITNSDDLSDALEEDKAPIDVKLMGAGVLIACTLFITGGLLQHLTGFPGPVLM IVVAAFLKYLNVVPKETQRGSKQLYKFISGNFTFPLMVGLGMLYIPLKDVVGMLSWQYFV VVISVVFTVIATGFFVSRFMNMNPVEAAIVSACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVITMTAIFRMLF >gi|308151742|gb|GL476280.1| GENE 8 9026 - 10195 1523 389 aa, chain + ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 8 385 7 385 388 550 75.0 1e-156 MSTKDVKELAIEQAKKFGGKLEVCPKVPIETKGDLGIAYTPGVAAVSSAIHEKKERAYEL TTKKNTVAVISDGSAVLGLGNIGPEAAMPVMEGKAALFKRFAGVDSIPLVLDTQDTEEII QTVKFLAPTFGGINLEDISAPRCFEIEQRLIDELDIPVFHDDQHGTAIVVLAALYNSLKL INKKIEDIHVVINGGGSAGLSITRKFLAAGVKHIIIVDRTGILSETDTGLPPHHAEIAKL TNREHRTGDLATALEGADVFVGVSAPGVLKPEWIQQMNEQPVIFAMANPVPEIFPDEALA AGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKKITIEMQIAAAKGIAKLIPDNELT PTNIIPDPFQEGVAKVVAESVRNAVKETN >gi|308151742|gb|GL476280.1| GENE 9 10269 - 11117 898 282 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1291 NR:ns ## KEGG: MPTP_1291 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: M.plutonius # Pathway: not_defined # 1 281 1 281 281 426 81.0 1e-118 MRVAGEKIKTARKKKKLSQAELAKGICTQATISNIENKNVCDSLDIFSSVCLRLDLQVEE CIEGSSEKKLESLLNKVEELCFYFKHDEAYDLLKDYPDDIESSNRILETKFFYYKGITSL LGKKNNSEALFYLHRGSEISRDINIYNILSMNAIGILYELEDDIEKAKVYYDKSLQLLSE FKLDYPLEQCRIYYNTAKFYSLIKDYAKSIELSDKGIEINRTHSSIYSLDCLLYEKAFNK QMLGLDAVEDYRIAYYFTRFFENKKLLAYIEKDMQEFNISFK >gi|308151742|gb|GL476280.1| GENE 10 11217 - 11279 231 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGISVRGNAPHQ >gi|308151742|gb|GL476280.1| GENE 11 11618 - 11923 530 101 aa, chain - ## HITS:1 COG:SPy2112 KEGG:ns NR:ns ## COG: SPy2112 COG3906 # Protein_GI_number: 15675862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 98 3 100 101 96 71.0 1e-20 MTEHNHDHDHEGHEHITLVDEQGNETLYEILLTVDGQEEFGKNYVLLYPAGIPEDEDVEL QAYSYVENAEGTEGDLQQIETDAEWDMIEEVFNTFMAEEEE >gi|308151742|gb|GL476280.1| GENE 12 11961 - 12383 502 140 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 139 196 72.0 8e-51 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG LPKNMNNSIGPRAEASMAYGDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK VIDKLAAVMILQNYLDAHSR >gi|308151742|gb|GL476280.1| GENE 13 12380 - 12649 456 89 aa, chain - ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 89 1 89 89 128 73.0 2e-30 MGFTDETVRFDFDDNRKKAISETLETVYRALEEKGYNPINQIVGYLLSGDPAYIPRYQDA RNLIRRHERDEIMEELTKYYLANHGIDIK >gi|308151742|gb|GL476280.1| GENE 14 13085 - 13837 815 250 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 249 1 249 250 241 52.0 9e-64 MTPAHLDLLLETCLLAGKIMIESDAEMYRVEDTMSRIALASGNYRMVSYVTQTGLFVGID GTSTIRMVQVMKRGIDLEKISRVNQLSRAYVSGDFSLEELLNKLKVIDSEHRHFPISARI VSAAVVSATIMILFGGVWSDLFLTFLIGGCGYSLYYFSLKFLKIKFLSEFLASLFIGAAA ILSVKLGLGQSQDLIIIGCVMPLVPGVQITNALRDLLAGHYLSGVSRGTEALMTSGMIGF GIAFVFQLFY >gi|308151742|gb|GL476280.1| GENE 15 13852 - 14343 418 163 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 151 7 152 152 157 55.0 7e-39 MLGIVLVQFIFSFLASAAFAIIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSL IGAVGVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQA VMIAGAIALGLVASEVFNQNIRSFREKRESLGFIRRKRNKIKK >gi|308151742|gb|GL476280.1| GENE 16 14395 - 15261 910 288 aa, chain - ## HITS:1 COG:lin0922 KEGG:ns NR:ns ## COG: lin0922 COG3689 # Protein_GI_number: 16799993 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 288 1 279 279 267 48.0 1e-71 MIRFIILIGYMGLMMYLQISGELNQYINIHYNYLAVLSMVLAFIMAIVQLILWNQADPSM QKKHEDMHQHGGHEHHGHQHNLEKPSQRGLAYLLLSLPLIVGLLFPTVSLDTTIVEAKGF NFPVSKESVGDPDMQTQYLKPDTSMYFNKTDYDKQMAKAMKQYDGQSVISITDENYLEIM ELIYNYPSQFAGKRISYKGFVYNSKREESVDQFVFRFGIIHCVADSGVFGLLVHFPEHTQ FQNNDWVTITGTVELSYYPPFKRQIPTVQVEKVKADQAPKNQYVYRSF >gi|308151742|gb|GL476280.1| GENE 17 15280 - 16194 914 304 aa, chain - ## HITS:1 COG:SPy0576 KEGG:ns NR:ns ## COG: SPy0576 COG0701 # Protein_GI_number: 15674665 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Streptococcus pyogenes M1 GAS # 1 304 3 297 300 290 53.0 4e-78 MFQFLPNSVLQMSTIFLSIIIEALPFVMLGCLISGALHVFLTPERVKKVLPKNKFLSICV GSFLGFFFPSCECGIVPIVHQFVKKDVPTHTAFAFMLTAPIINPIVLFSTYVAFSGATKF VIWRVLGSMIVAWVIGIWLAYFRKESILTEKELAQIKEEQVAHTHEHVDEARSFWKNGWS ALTHSIDEFFDTGRYLIFGSLLAAIMQTYIPTGALMQLGHSKILAILVMLVIAATLSLCS EADAFIGSSLLSLFGTGPIVAFLVFGPMVDIKNLLMMKRYFKMSFIVQFVLIVALVVTIY AAVV >gi|308151742|gb|GL476280.1| GENE 18 16405 - 17211 1056 268 aa, chain - ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 3 268 2 269 269 377 69.0 1e-104 MDSEFAFNISVLASGSTGNSLFIETNQKKVLVDAGLSGKKITSLLAEVNRKPEDLDAILV THEHRDHIHGVGVLARKYKLDVYANEKTWQAMDPMIGKVDVAQKHIFEMGKVLTLGDMDI ESFGVSHDAIAPQFYRFHRNNRSFVVLTDTGYCSDHIRGTIENADAYLVESNHEIEILRA GPYPWSLKQRILGDKGHLSNDDGALVMADVLGDKTKRIYLGHLSKENNTKLHARMAMEST LKQKDLGVGEAFKVYDTDPDSASELFQI >gi|308151742|gb|GL476280.1| GENE 19 17268 - 18122 666 284 aa, chain - ## HITS:1 COG:no KEGG:EF1196 NR:ns ## KEGG: EF1196 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 284 523 99.0 1e-147 MDFKRIEWIFFLAFLGLNIFLFGIYREGQQEESNVSSSSQTESIESRLEKDNISYKGTLS SERLEGYYLSGEQTNFSAALKIQREKNKNFLRNGLQIADNTLTSVPSKNYFIDPKKIDKD LSTFLNEKNALLFGDEYQYLPEFSHLKEPTAEIVATQSYKGIPFRDDTAKLSILADTSGE LWKISKYSQTHIENIEELRDKTDLYSNRDAIDTLYMNNRIPSNSKITFIKLAYSRIYKIR EKNVYVPVWFVGISTGEDSVEIEQVNAVSNTIITNNTVPKVEKH >gi|308151742|gb|GL476280.1| GENE 20 18122 - 19429 1022 435 aa, chain - ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 420 12 429 440 63 21.0 9e-10 MKLSEWITRIGLILMVILSIYFSVNIWLNSAKKIPEMKSGSQVTTAVNEKAIGDVYLPLQ LIRIADGKAMQSKRETLISNVQNDIKMATFGKLTQVVTKNAEQLKRYNQMEQGIELLYQG PFLISDYASIYNLSINFTNFNELTDQYFTKIQLDFNENKIRFLDYDQANVYEAPMTVNKA RLMGIINKEGLQYQDVSENTLTKQGQCYLTNDMKLKKYSYILASQPVTRFRNAFFNETED IQTNEDSQDLTYTSKEERLFAEEKLGKIDFKGTLPEENKRDSIYNQSFSYVKRLGTNMGN LRYFDRTKDSVNYRTFVEGFPVFSNDLKGQVDIRITNNDGAAPSVTINTSVNTIQVPIPS EEEVTLESTEKLIKRLEAAGAKKEKIQSAVIGYTWQTIEEVKQVVDLSPEWYVLYNNNWY TATDLVKQLPSLEVG >gi|308151742|gb|GL476280.1| GENE 21 19429 - 21258 2060 609 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 609 3 610 610 526 46.0 1e-149 MKKKVHFFQSVNFKIALSFILLLLIAIQIIGGYFIRELEATTISDFKKNMDSQVVQLSNT LSTQMSNKDLERSDVDANLKKALSDFSNADISEARIVDDKGIIRATNDLNQQNIIGKKND YRDLNDFTSKKYQALDNDKRVYVNVQPIQSPTGETVIGVLYVKSNLENKYQEITNTASIF FTASIIAAAISIIVTLLIARSITKPIGEMREQAIRIARGDYAGKVEVHGKDELGQLAETF NQLSERIEEAQETMEAERNHLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVI GTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLV CVLHDVTEQEKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTL EETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRRE FTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPK KDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPY EPYEEDWWE >gi|308151742|gb|GL476280.1| GENE 22 21265 - 21969 1015 234 aa, chain - ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 2 234 4 237 237 357 81.0 1e-98 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG LEVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE >gi|308151742|gb|GL476280.1| GENE 23 22143 - 22808 930 221 aa, chain - ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 222 222 195 58.0 6e-50 MKKAIAECLGTFILVFFGTGTAVLGNGMEGIGTTGIALAFGLTIVATAYSIGTISGAHLN PAVSIGMWLNKRMTTMELIYYVVGQIVGGLIASFALLSILKGAGKSIENLGQNGVGELSV AGALTVEIILTFIFVLVVMTVTSAKKGNASLAGIVIGLTLTMIHLVGIPLTGTSVNPARS IAPAVFAGGSALSELWIFIVAPLIGGLLAALVAKFVLDTEE >gi|308151742|gb|GL476280.1| GENE 24 22962 - 23822 1093 286 aa, chain - ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 281 2 277 280 214 41.0 2e-55 MNKEKIALLVDSGTDVPEALVKQYGMYVLPLQIIYPEKTYTDKVDITPEEVYQRLEKEIP STSLPDGATIQAIFDKIKEAGYEKVLAVTISSGLSGTYNVVRLLGEQTEGLDVFVLDTKN IGIGAGIQAIRAAELIETGLGWQELQQKLTEEVANAKVFFNVATLEYLQKGGRIGLVTSI LGNALKLNPIISCNEEGIYYTVAKSRGRKKSLDKTFELVTNFIGEAPRFRLAVAHGAAEE EAKAMMERLKAAFPQAEEIYFGTISPALVVHTGPGLLGVGIQLLND >gi|308151742|gb|GL476280.1| GENE 25 23815 - 24384 751 189 aa, chain - ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 328 99.0 5e-89 MDEIEKSLQNWGQQLENVHLPRWHELPDIELYMDQVITLIEKYLSPLITLEKHTLLTSSM VNNYVKHGLIPAPVKKRYNQKHLAFLIAITLLKQVLTLPEIKQGILFQGATVGIREAYNL FCQEQERAIYVIAAQAQEKEVQAKSQEPMGIEYLAVKAATMSFATKMFSEKVIELEQEYL KEMDEMIHE >gi|308151742|gb|GL476280.1| GENE 26 24511 - 25149 507 212 aa, chain - ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 196 3 192 210 100 36.0 1e-21 MMRSKLRLRETLGLICLFLTIVALSITITINFRPLYLFDIQHLNILKDVEVDRVTLIKNY DHLMMYLNNPFEKTLVFPDFPMSDSAAFHFYEVKKLFLLCYGVLLVTLLPSVLYLKYLVK NQRLWTLIRPFQWGMFLPVLFGFFMLIGFDQFFIAFHGLFFNNDAWLFNPLTDPIINALP EAYFMHCFILFFVLLEGLFLIGILIGKRSLKK >gi|308151742|gb|GL476280.1| GENE 27 25152 - 25922 1076 256 aa, chain - ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 254 257 317 64.0 1e-86 MKKDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLAN EFDIHVPASLVYTATLATIDYMKETNRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVV GLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVY IGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTL PTPPTYVVDSLDEWTF >gi|308151742|gb|GL476280.1| GENE 28 25928 - 26557 856 209 aa, chain - ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 51 137 3 89 91 127 65.0 1e-29 MTDKKTTEKKETETAATFTEELTAVLEEIKEEPVKEKKKGEIVTIVNETDIQIGEREYRI VKNHRDAFDPERLGERFSEVLARYDYIVGDWGYEQLRLRGFFDTSNRRAAPDQRIDTLED YLYEYCNFGCAYFVIERTGERKEKTTHRRRRHKKNNRSNAFVEEKSAPTNKNSKPVIRTR KEENKKTTTPKQPSPKKSGKGFTIRQREE >gi|308151742|gb|GL476280.1| GENE 29 26592 - 27974 1423 460 aa, chain - ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 457 2 457 463 306 35.0 6e-83 MEEIVLFHTNDLHSHFENWPKIRRLVKAKRSLHQKEGKTVVTIDLGDFSDRCHPLTEATD GRANVAIMNTLAYDLVTIGNNEGIGNSKKQLEHLYDQATFEVVLANLEDPKTQTLPDFCQ AYKIMTTKEGTKLGFIGLTAPFPLTYNPNGWTIKQVEAVLPQLITEVAPQCDVLILLSHL GIDTDFMIAANYPEIQVILGSHTHHVFKDGEKINHVQLAAAGKYGQYIGEVHLFVDADTK QVTSYAKTIETASLEEQATDAKEIAGYLTEGHRLLQAQQIAQIPETLSTDLRQPHAFITV ALKALKEAGQTEAAVLNNGLFLADLPEGIINADQLHEALPHPMHLIKVTLKGSDMSRLIR EMEKSRQFLRKFPIRGMGFRGKIFGELCYDGIRFERNSQTVFWQGKPIQPEQKYTLTTVD HFQFVPFFPTIELVGEVEFLFPDVLRTVVSNYLHAHYPIK >gi|308151742|gb|GL476280.1| GENE 30 28099 - 29787 1987 562 aa, chain - ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 552 1 552 553 696 60.0 0 MSTIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSE RIAGIFLTHGHADAIGALPYLLSKIQVPVFGTELTIELAKLSVNSHAETKKFKDFHVIDP HTEIDFGQATVSFFKTTHTIPDSIGVSIKTKEGNIVYTGDFKFDQSAIEMYQTDYGRLAE IGKEGVLALLSDSSNAENPVQVASEAQIADEVFDTIRYWEGRIIVACVASNLQRVQQVLN AADRSGRKVVLTGQDFERIIRTAMKLEKLQLPSEDLLVKPKEMKKYAPEQLLILETGRMG EPIKSLQKMANNTHGVVRIEEGDLVYITTTPTTAMETTVAKTEDIVYRAGATVKQISDNL RVSGHANPNDLQLMLNLMKPKYFVPVQGEYRQLAAHADLAHEIGMPYKDIFITGRGDILE YTKGRMSVAGSTTAENIMIDGIGVGDIGNIVLRDRRILSEDGIFVAVVTINRREKRIVSP AKITSRGFVYVKTSKDLMKESSNIVTEIVEKHLESDDFEWSKLKQEIRENLSRYLFEQTK RRPVILPVIMEATQRKRPKNNA >gi|308151742|gb|GL476280.1| GENE 31 29818 - 30690 926 290 aa, chain - ## HITS:1 COG:L0093 KEGG:ns NR:ns ## COG: L0093 COG0329 # Protein_GI_number: 15673602 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Lactococcus lactis # 3 288 10 295 297 378 65.0 1e-105 MDLTNATIITAMVTPFQESGEIDFGKLPQLVDYLLANHTEGVILAGTTGESPTLTHEEEL QLFQRIIELIDGRIPIICGVGTNDTRDSVAFVKELATIAGIDAVLAVVPYYNKPNQEGMY QHFKTIAEASELPIILYNVPGRTAACLEVETTLRLAQLEKIVAIKECAGLDAITELIERA PKDFLVYTGEDGLAFATKALGGQGVISVASHVFGSSMYEMYQALEQGNLPEAAKIQRQLL PKMNALFSVPSPAPVKAALNHLGIPVGNLRLPLVACTPEEEQRIIRTLEI >gi|308151742|gb|GL476280.1| GENE 32 30724 - 31791 1164 355 aa, chain - ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 4 350 3 348 358 469 67.0 1e-132 MGKEYHVAVVGATGAVGTRMIELLAETSLPIASVRLLASKRSAGQEIQFKGQPLIVEELV PESFEGIDLALFSAGGSISEKFAPEAVKRGAVVVDNTSHFRMAKDVPLVVPEVNSEALKN HQGIIANPNCSTIQMMVALEPIRQAFGLERIIVSTYQAVSGAGIRAINELKEQAEDFLEG KPVSEWSAEILPAGSDEKHYPIAFNALPQIDVFSEAGYTYEEWKMMNETKKIMGDNKLKV VATCVRIPVISGHSESVYIEVKQADASVSAIQELMAQAPGVILQDEPSEQLYPQALNSVN QKETFVGRIRQDVDVKNGFHLWIVSDNLLKGAAWNSVQIAETLHEMNLLRVPEND >gi|308151742|gb|GL476280.1| GENE 33 31998 - 32456 698 152 aa, chain + ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 4 150 7 157 160 177 55.0 4e-45 MARVESFELDHNTVKAPYVRLAGTEQNGDALVEKYDLRFLQPNKDALPTGALHTLEHLLA VNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKEC GNYKDHSLFAAKEYAKIVLDQGISLDPFERIL >gi|308151742|gb|GL476280.1| GENE 34 32540 - 33274 889 244 aa, chain + ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 242 1 242 245 270 54.0 2e-72 MNQTIEQLLSHRSVRHFKKQALTDKQKQQLITAAQAGSSSNFLQAYTIIEIKDPELRREL GRLANCEDYVVNTGVFYVFVADLYRHATILSKEGQSLEPLKTPESLLVAAVDTTIAAQNM AIAAESMDLGICYIGGIRNDLDTVAQRLSLPELTVPLFGLTIGVPETLNGVKPRMPFENI LSENRYQPDKLTDMHAYDELLKDYYASRSSNAQTADWSQKSLSYFSYNRRPEVKIFLQKQ GFDV >gi|308151742|gb|GL476280.1| GENE 35 33332 - 33580 479 82 aa, chain - ## HITS:1 COG:no KEGG:EF1180 NR:ns ## KEGG: EF1180 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 88 100.0 8e-17 MADLKGRFDDAKDKVEGTAKEAQGKVTDDKGKELEGKAQSTFADVKDKARDAGDDLKEGA EKLTDKVKEGFEDLKDKFSKDK >gi|308151742|gb|GL476280.1| GENE 36 33671 - 34549 1130 292 aa, chain - ## HITS:1 COG:CAC1523 KEGG:ns NR:ns ## COG: CAC1523 COG1940 # Protein_GI_number: 15894801 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 5 284 2 281 288 342 56.0 5e-94 MTEKLLGSIEAGGTKFVCGVGTDDLTIVERVSFPTTTPEETMKKVIEFFQQYPLKAIGIG SFGPIDIHVDSPTYGYITSTPKLAWRNFDLLGTMKQHFDVPMAWTTDVNAAAYGEYVAGN GQHTSSCVYYTIGTGVGAGAIQNGEFIEGFSHPEMGHALVRRHPEDTYAGNCPYHGDCLE GIAAGPAVEGRSGKKGHLLEEDHKTWELEAYYLAQAAYNTTLLLAPEVIILGGGVMKQRH LMPKVREKFAELVNGYVETPPLEKYLVTPLLEDNPGTIGCFALAKKALMAQN >gi|308151742|gb|GL476280.1| GENE 37 34776 - 34988 211 70 aa, chain - ## HITS:1 COG:no KEGG:EF1177 NR:ns ## KEGG: EF1177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 70 89 97.0 4e-17 MASWFWLSGGLAVICFMFFLFSLLTSMSFIQHAKEPRSILKETLLSWLMLLLSGGWITIG LLLYFSLKNQ >gi|308151742|gb|GL476280.1| GENE 38 34981 - 36045 759 354 aa, chain - ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 636 98.0 0 MSRKKVGVFCLFLFFTFFIIVPKVEATEEMKTKFTVTPVLPENQVSGTSSYYDLILAPKQ SSTIVLDIKNKTDEKLSIVLTLANASTNDNGLIVYNDFDKPLDSSLKVPLTDLVTLENEE VSVPPHQTVSAKMKVKGLDQPIKGVVLGGVYAHLKDEKTEEENQTTGLTSRYGFNVAIAM RSAENAPLTEVNQLKLAKVTPTIALGSKSLKAVIQNPYAAIFPEVRLEGQVIKKGSSKKI AQRTLKNVRFAPNSSMNFHLDLGKQPLDAGTYIFTGRAILQQDEQQSWPFQQEFTINTRE AKKLNQEATVKWVLPTWWLPTFYTLLVITIGAICSVIWRNNYQKTSEKESENNG >gi|308151742|gb|GL476280.1| GENE 39 36184 - 36594 381 136 aa, chain - ## HITS:1 COG:BS_tagD KEGG:ns NR:ns ## COG: BS_tagD COG0615 # Protein_GI_number: 16080627 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Bacillus subtilis # 5 132 1 126 129 158 62.0 3e-39 MEVFMKKILTYGTFDLLHYGHINLLKKAKQQGDYLIVGLSTDAFNLEKKKQSYFSYEKRK QLLEAIRYVDLVIPETSWKQKVSDIAEFKIDTLVMGDDWQGAFDFLEVETTAKVLYLPRT PEVSTTQIKKELYYSE >gi|308151742|gb|GL476280.1| GENE 40 36647 - 37240 312 197 aa, chain - ## HITS:1 COG:no KEGG:EF1174 NR:ns ## KEGG: EF1174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 310 99.0 2e-83 MIILFIWENDLDTTFYIVKIEKDEKFILRVPPIHKLSKFVQNNQWNSLIEELRKLSSYEV TEYIIIKKAMLFSYLFEDDKEIVISNQSERHLIDQNGKEWFLPKGKVAVNQEVLSEYLRF NHSDAERSFEHQEHIFRLTKIKLLKDKNPLKLQKQLKQLKKATTTSFSIKSLSKLLLIYT ATENKKFDRKTIKVNQE >gi|308151742|gb|GL476280.1| GENE 41 37241 - 37987 454 248 aa, chain - ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 5 244 1 241 256 157 37.0 2e-38 MKSKVRTEYIGGLPVDVLTHQEIMDDLESYLKAKEKMIVTSVNPQISLLAFEHPEVKLYL KRATHRIADGIGVVKASKLMGGSIRERVTGIDVMDNFLEYANQHKERIFLYGAKQEVVEA AAKNIQRQYPGIVISGILHGYTKKKQQEIVEQINKAEPRFVFVALGSPKQEIFLEQTIDH LRANVFLDVGGTFDVLAGSVKRAPEFYINHNLEWLYRCLTMKRYDRLMQIPKYIYLTIKY RNNKSRGQ >gi|308151742|gb|GL476280.1| GENE 42 37977 - 39014 422 345 aa, chain - ## HITS:1 COG:lin1075 KEGG:ns NR:ns ## COG: lin1075 COG1887 # Protein_GI_number: 16800144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 60 339 89 381 383 140 33.0 5e-33 MSFPRNDGHLIEQLEQQYHGMIIVLYTKNCQSYAASLNQKGIKTILFDKKTLLITTAISY LKSAPLIFVDNYFPELAILKKKQVVIQLWHANGALKQFGWGAYHTKHRSSKDQIRFQKVY DKMNYFIVNSLKMEAIFRNNYRLENAQFCHFGSPRLAYLEKLEVGETNQNNKVLYAPTYR EGMNEMMLVINQAIKAFSAMPNFHFYMKLHPSIQLDAIELPRNVSIWEKHIFESFSEIGY LITDYSSVVFEYMHVKEQPNILFFCPDLEKYALNPGIEPDFFEYLPGPLVENEKQLIVAL SNFSINSYKDNITRINEEWNQYQSKETINKIVELVERILGGFCEK >gi|308151742|gb|GL476280.1| GENE 43 38918 - 39136 92 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIDNFLYKVLLSFRDIVVLIVQLNVHHFLGNSLCTQFLLFYACTVSILILLSTIVLALLY PFTNNSFLIKKI >gi|308151742|gb|GL476280.1| GENE 44 39406 - 39705 532 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 [Enterococcus faecalis TX0104] # 1 99 1 99 99 209 100 2e-53 MDQGKGAKKRMKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEV TSDSHPFYTGRQKFTQADGRVDRFNKKYGLKDENANPDA >gi|308151742|gb|GL476280.1| GENE 45 39775 - 41049 1313 424 aa, chain - ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 419 5 423 423 609 71.0 1e-174 MAELENSTLKDIYAYAKEFKIPYYSQMNKKELSLAVIRAQAEKQGFFFMEGILDIVSQDG YGFLRPINYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKD PEEAKERPHFPALTPLYPEKQLTLETTAGRLSTRMIDVFAPIGFGQRGLIVAPPKAGKTS VLKEIANGITENHPDVELILLLIDERPEEVTDLERSVKGDVVSSTFDQQPQNHTRVAELV LDRAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFFKPKRFFGAARN IEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRELAERRIFPAIDIKKSSTR KEELLMTPEQLEETWKLRNNMSGDSLEYTDQFIKMLKRTQNNQQLFEVFHDVSFGKQIKR NPKR >gi|308151742|gb|GL476280.1| GENE 46 41064 - 42356 1719 430 aa, chain - ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 418 1 420 421 542 67.0 1e-154 MKKIVINGNRPLKGEVTISGAKNSVVALIPAAILADSPVTLDGVPDIQDVHSLIEILEIM GAKITFENNTLIIDPTEVVSVPMPKGKINSLRASYYFMGSLLGRFGEGVVGLPGGCYLGP RPIDLHIKGFEALGAHVTNEHGAMYLRTDEAGLQGTRIFMDMVSIGATINVMLAAVKAKG KTIIENAAREPEIIDIATLLNNMGAKVRGAGTDVIRIEGVEELHGCRHSIIPDRIEAGTY LAMAAAMGEGIKVRNVIYEHLESFIAKLQEIGVKMTIEEDMIEVHPSHDLKMTTVKTYPY PGFATDLQQPLTPLLLKAQGTGEIIDTIYAQRNKHIPELVRMGADASVEGNMIILNGPNQ LHGAEVVASDLRAGACLVTAGLMAEGTTTIYNVEYILRGYDHIIEKLTALGADIQMLETE EQEGPFEVDQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:15:36 2011 Seq name: gi|308151741|gb|GL476281.1| Enterococcus faecalis TX4000 genomic scaffold Scfld63, whole genome shotgun sequence Length of sequence - 34310 bp Number of predicted genes - 31, with homology - 29 Number of transcription units - 12, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/1.000 - CDS 61 - 1110 1276 ## COG0673 Predicted dehydrogenases and related proteins 2 1 Op 2 . - CDS 1135 - 2568 1756 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 2659 - 2718 7.1 + Prom 2726 - 2785 8.8 3 2 Tu 1 . + CDS 2811 - 3524 886 ## COG2188 Transcriptional regulators + Term 3593 - 3642 1.4 + Prom 3641 - 3700 7.4 4 3 Tu 1 . + CDS 3774 - 4325 584 ## EF1241 hypothetical protein + Term 4547 - 4581 -0.8 - Term 4300 - 4347 8.4 5 4 Op 1 2/1.000 - CDS 4358 - 5323 982 ## COG1609 Transcriptional regulators 6 4 Op 2 1/1.000 - CDS 5339 - 8614 2880 ## COG3459 Cellobiose phosphorylase 7 4 Op 3 . - CDS 8632 - 10782 2522 ## COG1472 Beta-glucosidase-related glycosidases 8 4 Op 4 . - CDS 10787 - 11551 703 ## COG3568 Metal-dependent hydrolase 9 4 Op 5 . - CDS 11532 - 12449 720 ## COG3458 Acetyl esterase (deacetylase) 10 4 Op 6 . - CDS 12442 - 13035 431 ## EF1235 hypothetical protein 11 4 Op 7 14/0.000 - CDS 13092 - 14690 2203 ## COG1653 ABC-type sugar transport system, periplasmic component 12 4 Op 8 7/0.000 - CDS 14708 - 15589 813 ## COG0395 ABC-type sugar transport system, permease component 13 4 Op 9 . - CDS 15604 - 16515 993 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 16552 - 16611 10.9 - Term 16771 - 16803 3.2 14 5 Tu 1 . - CDS 16807 - 17631 897 ## COG1408 Predicted phosphohydrolases - Prom 17769 - 17828 6.4 - Term 17774 - 17823 14.2 15 6 Op 1 . - CDS 17839 - 17934 180 ## 16 6 Op 2 . - CDS 17955 - 18638 453 ## EF1229 hypothetical protein 17 6 Op 3 . - CDS 18580 - 20070 1030 ## EF1228 hypothetical protein - Prom 20196 - 20255 7.0 - Term 20207 - 20242 5.2 18 7 Op 1 1/1.000 - CDS 20482 - 21738 1392 ## COG0431 Predicted flavoprotein 19 7 Op 2 2/1.000 - CDS 21757 - 22365 709 ## COG0431 Predicted flavoprotein 20 7 Op 3 . - CDS 22392 - 23327 942 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 23378 - 23437 10.6 - Term 23430 - 23470 5.1 21 8 Tu 1 . - CDS 23549 - 24418 821 ## EF1224 Cro/CI family transcriptional regulator - Prom 24468 - 24527 9.2 - Term 24501 - 24552 10.1 22 9 Op 1 . - CDS 24624 - 25952 1363 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 23 9 Op 2 . - CDS 25936 - 27675 1758 ## COG1001 Adenine deaminase 24 9 Op 3 13/0.000 - CDS 27696 - 28760 1416 ## COG0687 Spermidine/putrescine-binding periplasmic protein 25 9 Op 4 8/0.000 - CDS 28787 - 29827 1230 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 26 9 Op 5 36/0.000 - CDS 29866 - 30645 908 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 27 9 Op 6 . - CDS 30638 - 31474 887 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I - Prom 31501 - 31560 5.8 - Term 31608 - 31664 14.3 28 10 Tu 1 . - CDS 31681 - 32085 447 ## EF1217 putative lipoprotein - Prom 32292 - 32351 8.0 + Prom 32250 - 32309 13.1 29 11 Tu 1 . + CDS 32334 - 33053 743 ## EF1216 hypothetical protein + Term 33064 - 33113 2.3 30 12 Op 1 . - CDS 33087 - 33149 58 ## 31 12 Op 2 . - CDS 33167 - 34249 983 ## EF1215 hypothetical protein Predicted protein(s) >gi|308151741|gb|GL476281.1| GENE 1 61 - 1110 1276 349 aa, chain - ## HITS:1 COG:ECs4289 KEGG:ns NR:ns ## COG: ECs4289 COG0673 # Protein_GI_number: 15833543 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 348 1 345 345 355 51.0 6e-98 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTTDLNEL LTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM PYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRPGSITEQGPKENGSFYGLGIHLM DRMIALFGRPDHVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHSVASPYPRFIVH GSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKKQIKTPVGD YGRYYDAVYETLKNGAPQLVTEEQALTNIEILEAGFLNPSPSVYRLKEN >gi|308151741|gb|GL476281.1| GENE 2 1135 - 2568 1756 477 aa, chain - ## HITS:1 COG:L179659 KEGG:ns NR:ns ## COG: L179659 COG2723 # Protein_GI_number: 15672157 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 475 1 475 478 740 74.0 0 MEHHQLKAFPQDFLWGSASAAYQVEGAWNEDGKGASVWDEFVRLPGKTFKETTGDLAVDH YHRFKEDVALMKQQGLKAYRFSIAWTRILPEGRGQVNQAGLKFYSDLIDELLAAGIEPMV TLYHWDLPAVLQKEYGGWESRKIIADFVAYAKILFDAFRGKVRYWISLNEQNVFTSLGYQ LAVHPPGVTDNKRMYEANHIANLANAAVINAFHELEMPGKIGPSFAYTPVYAVDAHPANV LAAENAEDLLSHFWLDVYLWGEYPIAALNYLQEQGVAPTIKEGDLALLRSAKPDFLGINY YRTDTVAANPLDGVGIGKMNTTGEKGSETESGVPGLFKKVNNPYVERTNWDWAIDPQGLR IALRRLASRYQVPILITENGLGEYDTLTEDKQIHDTYRIDYLRSHIQAIQEAITDGVSVI GYCTWSYTDLLSWLNGYQKRYGFVYVDQDETQKGSLERIPKDSYYWYQKVIETNGLI >gi|308151741|gb|GL476281.1| GENE 3 2811 - 3524 886 237 aa, chain + ## HITS:1 COG:lin0390 KEGG:ns NR:ns ## COG: lin0390 COG2188 # Protein_GI_number: 16799467 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 235 237 167 39.0 2e-41 MRTNTRYKEIYAAIKQDIEAGVYPINQKLPQGRLLAEKYQVSELTITKALHLLVQEGYVV RRRGSGSFVQDFQNRTITKFSPLTGTYSTYDGKVESVVLGFATEVPEPWVTEKLSITEEE LVYKIIRLRIIEDVPSIIEYTWMPVALIPNLTMKELKVSIYQYISEQLHQKIQSARVSIS GIRPSALEKKYLNLTDNDFLMRAEQIAYLGNGHIFEYSIANHIPSEFTFETVLIAEK >gi|308151741|gb|GL476281.1| GENE 4 3774 - 4325 584 183 aa, chain + ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 183 12 176 176 318 100.0 6e-86 MRKPYILMSLLVLSTLLSACSTVSGSPASQSAPAPDEVLATSIGTYENRTLLVPDGRLAL TALHKGKDYQGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQNLQYAVLTDS PFQDKLDRLADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDEPIASEEITITEKS LVR >gi|308151741|gb|GL476281.1| GENE 5 4358 - 5323 982 321 aa, chain - ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 317 1 317 321 364 59.0 1e-100 MVGIKDIAKKAGVSISTVSYALNGSSKVTEETRTRIQAIAEELNYVPNMAARTLKRRQTN IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP TKEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMA IGVYKYVAETNYQMGKDIRIIGFDNSELGAFVQPRLATIAYSKHRWGMVAAEKIIHLMRG EAAESEHIYTRFIEGESFPSE >gi|308151741|gb|GL476281.1| GENE 6 5339 - 8614 2880 1091 aa, chain - ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 3 1086 4 1078 1086 860 43.0 0 MQIKKLKQADTVATFLETGDLKELNSCGMMINQLEGNPLDGSMNQLYLRIITGDTINYRP MIGSNSQSDFYLSDNQLTWRGEFEAVRYQVDFRLGPSNQWFWRVNVTGTGLVDIVYGQDI GLATKGAVQSNEAYVSQYLDHHIWQEGEELVVLSRQNQPQNEKFPALIQGSFQKLAGYST DGYQFFGRSFKQTNTPEALGKRYLANEVYQYEFAYTALQTEAVQLTNESKEFVFYGAVTE THPQALAEPFLSKEALQVIYETVTFDSLEGTQDYPPKLLGEPITGNPLTEEELTALYPLQ TQIEKVAGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDEPLLSTTVYMYGI FNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPSAFEMGLNSATWY YKLPKDTIRVRTFTSPDSRVIQLEVTSQKDAYMWAVSNHLLLGPEEVPTYQLEQTGKTLR VTGNHSATENYYPELTYALTVDKSFQVTDSTLFGGAEADLLVLAIEKTQKFSLLITGSTE DQALVNTPLDFEKAESQYLAFINGLLHHFELTHTDSSVQQMNQLTRWYTHNMLVHYLSPH GLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVASIIQHLFENQFEDDGNWPQWFMFDRYE EQKASESHGDIIVWPLKVVTDYLEQTADYSILATEIPYTSRKDNHKTKETASLFEHLKKE INYIEQHFLPETFLSCYGDGDWDDTLQPYDNRLKEQMASSWTVALTYQVLKKFAALITEI DATYSQHLAILVAGIKNDFQKYMLADETIPGFIYMETPETFEQMIHPNDQKTGIQYRLLP MTRSMLAELLTPEQVSHHLEIIEKELTFPDGVRLMNKPANYRGGVSTNFKRAEQAANFGR EIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQINPVQLKEGVHNAELRQANAYFSSSDGD FKTRYESQENFGKLKDGSIGVKGGWRIYSSGPGIYLNQLITAVLGIRQKAQSVVFDPMLP EKLSGLTLTYQLFDKPVTYKFYPNQSAKIVIDGQEVPFKFEENPYREGGMEVQKDEVLSL LNEASVIEIYH >gi|308151741|gb|GL476281.1| GENE 7 8632 - 10782 2522 716 aa, chain - ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 712 1 717 723 635 48.0 0 MKENQLIQLVEEMTIDEKINQLLQLAAAFYSDKAEEKTGPMSELGLSQETIDTAGTTLGV SGANEAKRVQKEYMQNHRLNIPTLLMADIIHGFRTIFPIPLALGSTWDEAAVEKMAEISA KEAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPLLNSRLAAAMVRGYQGENLREDNWR VAACVKHFAAYGGALAGRDYNTVDMSERQLREMYLPGYKAGLDAGAKLVMTSFNTVDGIP ATGNQWLFRDVLRNEFGFEGVVISDWGAIKELIPHGVAKDEKQAAELAIKAGVDIEMMTT CYPDYLKELLEEGRIAETLIDEAVMRILKLKNELGLFENPYRGADEQAEAEVILSKEHRE IAKKIAQKSMVLLKNENILPFTPQEKIALVGPGAQSQDILGAWSWQGKKEEAISLVAGAQ KLTTNLLVAQEPFDYFEPTAAAIEEALTLASQADKVVVALGETDWMSGEAASRSDIRLPE KQLAVVAQIIEKNPNVVVTVYSGRPLDLQEIDVAKGIVQAWQPGTEGGNALAEILWGEYN PSGRLSMSFPETVGQVPIFYNVDNTGRPYESAPEEKYVSKYLDVSNYAKYPFGFGLSYSH FSYQPIQLSALTFTKEQPVTVSVLVRNDSPIAGEETVQFYVRDLVGQVVRPIKELKDFQK VWLEPKEEKEVQFLLSEDMVRYVHSDNQVTSDAGEFIVMIGGNSRDVQTATVTLNE >gi|308151741|gb|GL476281.1| GENE 8 10787 - 11551 703 254 aa, chain - ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 3 247 4 252 257 168 35.0 8e-42 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTC LSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKET TQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEAVHQLVQ KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPS DHFPLEAEVCIEER >gi|308151741|gb|GL476281.1| GENE 9 11532 - 12449 720 305 aa, chain - ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 3 297 23 324 325 163 33.0 5e-40 MNEYFEFWQKTKEELQKIPLDIHRRVIDYPLENVQVEQVDFLSFLGERIFGYLLLPKTAG KQPIVIDCLGYMNHIQEPWQFAHWTQIGCACFVIDNRGQGGLTKDRVPYQTIWHEAPMGR GFLDKEDWYQRRLFADHLRSVEVVRTFTEINQDQIILRGGSQGGGVVLMVNSLVDFPILA TFADVPSHSCLENRVAEGTGSYQIIHQYLQEHPQAHEKIAAVLPYFDSRHFVSQIKNPVF ASVGSHDPICPIKDFFPSYHQIKARKAVRVYWKKGHGGGETTQIRREMRQIQQLLQEVKN ENSYV >gi|308151741|gb|GL476281.1| GENE 10 12442 - 13035 431 197 aa, chain - ## HITS:1 COG:no KEGG:EF1235 NR:ns ## KEGG: EF1235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 252 99.0 5e-66 MNKLFAYEGWYYRIFSFIANLIIINFLFLITCITGIFSGVGLIALYRTIYRLYREKDIPV LRTFWTALKNNIMRGFILTGVLFVAFLLGGIVVTSLFKIATSLGFLAIFLLSFVALFLTS FLFLFSVFNWSVKKTLGETVYVVLSNSANAIILFILPLLTFVFFYKLNLFLYIALGFGTT AFLQVAFFQKVLGVEHE >gi|308151741|gb|GL476281.1| GENE 11 13092 - 14690 2203 532 aa, chain - ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 90 420 76 411 551 96 25.0 1e-19 MKKVLGGLLVATAVVSLAACSGGEKKASSDVSIKDRYELDEKTPAWKLDKKKEPTKIKWY INSDWTALPFGKDVTTAQIKKDLNVDIEFISGDDSKLNAMISSGDMPDIVTLTEKTGQAA LKADSWAYSLNDLAKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSNTKADYESGNIPV NDNFVIREDVYNALGKPDVSTPENFEKVMQQIKEKYPEMTPMGFTTVGDGAGPFLDKLQD FLGVPLEDKNGKYYDRNLDKEYLEWLKTFNDVYRAGNISDDSFTDDGATFDEKVKQGNYA TMLVAGTSGQGGNFTEFMKKSGTRYIAIDGPSSTSGRKPTLNQTGISGWLSNYITKDAKD PAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPEVKKLEQTDNDAYNKKYGI SRFLYFNNDRVNKLKVPMESALTQMQEWGKGKLVPHFVIENINPDAGTPEARANEAIETK LNTTVISMIRAKDDKAFDKSLEDYKAFLKSNKWDAIEKIKSEKMAENRDKLK >gi|308151741|gb|GL476281.1| GENE 12 14708 - 15589 813 293 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 6 292 10 294 295 220 41.0 3e-57 MIKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLE NYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMY FGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASE FQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLS TMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVKE >gi|308151741|gb|GL476281.1| GENE 13 15604 - 16515 993 303 aa, chain - ## HITS:1 COG:BH2112 KEGG:ns NR:ns ## COG: BH2112 COG4209 # Protein_GI_number: 15614675 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 4 299 39 335 337 225 41.0 8e-59 MKKLKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFR IIMEDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFS WIVLGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTIL YLAGMSRIDPTFYEAARIDGASKLTQIRAITLPLLAPIISLNLILNVSGLLGSNLDQTLV LMNAQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRS VIL >gi|308151741|gb|GL476281.1| GENE 14 16807 - 17631 897 274 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 2 271 3 277 278 238 44.0 1e-62 MVKKIGLSIMLSFFFLIIALPIYAWKIEPNLVHVNQVTLGKKNQREPLNVVQLSDIQVSE FYETKRLDKVIKKVNREKPDIIVFTGDLFDNYAKNPQQKEPMIEKLKQLQATIGKYAVWG NHDYGGGASAVYDEVMEASGFTVMKNQGETVTLADGRRLFIGGLDDSLLGNPSVSETLSY RETYDYALLMTHEPDVADAFVGTGTQLVLAGHSHGGQIWIPFYPITNVLAEKYTRGLYQL DQETQLYVNTGLGTTAIHARFGVIPEITHFTIYI >gi|308151741|gb|GL476281.1| GENE 15 17839 - 17934 180 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLAGLFSVTGMILLGILFCLIGYQTFRKHHH >gi|308151741|gb|GL476281.1| GENE 16 17955 - 18638 453 227 aa, chain - ## HITS:1 COG:no KEGG:EF1229 NR:ns ## KEGG: EF1229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 408 99.0 1e-112 MSTMRETQSRCGENKNTKDSQLRQAVNYKDLTGQKFGELTVVAPTAKRKEGLIVWACRCS CGSYAEASRRQLIRGYRTKCAHHRYQTMLKKNYHELVVVRIESIQQTMKAYCLCSCGQSC WVRCENLLNGHTKSCGHRKKKDYRQRVAGVIPGKLQSKRPKNNSSGHKGVSQTASGKWLA YISLKGKRHNLGIFTKKSEAILARKLAERRLFQPILQQEIVTTNKEV >gi|308151741|gb|GL476281.1| GENE 17 18580 - 20070 1030 496 aa, chain - ## HITS:1 COG:no KEGG:EF1228 NR:ns ## KEGG: EF1228 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 939 99.0 0 MTTLLDELLDQEFRDKLLIYQTFMNSEGPLLKEEFYGYFDLSTQKLESLCRQINYECTQI SSRSQILFPAKGLISAQKLSQIDYQALRKYYFDQSLMAKLLLDVGLYQKHTIQEFSQIHF MSKSKIYAFSYKLNLILANWRIKLKSTGLVGEEKNIRSFCFQCLYYFYGSNQERLPNILL ENSPGIKRFINDLQLMYQRTFSLNQSAQLFILLTIQRFRVFSDHVVDSFTEVHVPSCLQH AFEKIYTSETPLFKEDFGKETSYIFLFLSLNEYIDSPIVFPDKLTMLDEFIDHMNSVIPF FEKRITVETKEKLKLICYRWDRLYFSVAAFIPAKQSSFFEERFPQIHRALDGFIQKTESL HQKRFLMYERVHLYYDFMFCLLNDRSFCAIEKTIHVFVDFSGGEDYNRFIAKIIASFNYM DVMIDHKLTLETDLYLSDFYSSKVRCRQLTWRHLPETKDWQVFAEVVRELRKGETQKNEH YERDPIEMWREQEYEG >gi|308151741|gb|GL476281.1| GENE 18 20482 - 21738 1392 418 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 187 1 187 187 258 65.0 2e-68 MKLIGIVGSNADSSYNRLLLQYIGKEFYKMFDLEILEIKDIPMFNQSKDQTNSVLIQNMN RKILQADGVIIATPEHNHTIPAGLKSVLEWLSFKIHPLENKPVMIVGCSYYDQGTSRAQL HLRQILDAPGVNAIVMPGNEFLLGKAKEAFDENGNLIAEGTRQFLESTLQKFVEFIDVIS KLEGAKPKDLPEDLHAKGTIETTIEGVDMAADDWVEQAAEAVQAVEGDTYVKLDRGILTV DQLNYFLKSMPMELTYADSNNQFLYYNKKMAAEEMFAKRQPGQVGNPLANCHPPKALKNV EWVIQQLRSGKTDAIRVHVPMHGPDTYVVHNYQAMYDDNGNYAGINEYILDFKPIVDWYL KQTGQELVGGKNVDAVSGASKKEAPETADSVSSASVHEEESATEKPTVDSVSSASIKE >gi|308151741|gb|GL476281.1| GENE 19 21757 - 22365 709 202 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 201 201 247 60.0 1e-65 MKKIIGLVGTNSEQSTNRQLLQFMQHYFAQEADIELVEIVDFPMFNKPEDKVLPEIVKTV AEKIEAADGVIISTPEYDHAVPASLMNALSWLSYGIFPFVDKPVMITGASYGTLGSSRAQ AHLRQILDAPELKARIMPSSEFLLAHSLQAFDENNALKDSEQIDKLAGLFADFCVFIEIT EQLKHAHAQNKKEAENFSWETI >gi|308151741|gb|GL476281.1| GENE 20 22392 - 23327 942 311 aa, chain - ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 1 302 1 303 312 302 51.0 6e-82 MQQSQTIYLMGTVIDVFVDHEESEKILEEVHQRLITYEQRFSANDSTSELMAVNQQAGQK PVSVHPELYQLIALGKKHSCDPASHLNVTIGPLVQTWRIGFKDARVPSEEEIKACLKKIN PEKIHLNPLKQTVFLEEEGMKLDLGALAKGYIADLLIAYLKEVHVTSALINLGGNIVTLG PSTHQNKKWRIGIRNPQKSRETISLLVEVANQSVVTSGIYERSLTEAGRVYHHLLDPTTG YPLETEMASITIISDASVDGEIWTTRLFGYPIPEALEILNQLDGIEGVIITQDQQILYSS GLADTLHIIHS >gi|308151741|gb|GL476281.1| GENE 21 23549 - 24418 821 289 aa, chain - ## HITS:1 COG:no KEGG:EF1224 NR:ns ## KEGG: EF1224 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 289 6 294 294 535 99.0 1e-150 MNIQRFIEKRKARGLSQSELAKGICTQVTVSRFEKNGQVPTLKILIQLCNRLELPLGELF PRVGIKQPEILEKMEEAEFFLITSEHDQLQTILKNIPFDEIKDSQLLLEYYYLQGFVMIF QNASLMDCLFTFEKLLFEEQKYTSDIYRLLAFTGIGMAYAKEGEIEKAEFYFNKVFKEIY LYTIQSMEDTWRVLNVVFHCGVFYAEKGDLETSDALLEYAISICSDNHVTYYLARAAFQL AKNALAEEKPQEQILELLQDARAYAKINKNRILLEAIQTLKETILSKNN >gi|308151741|gb|GL476281.1| GENE 22 24624 - 25952 1363 442 aa, chain - ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 4 436 15 440 442 254 35.0 2e-67 MKTLIKNVHILTMDEQFSEIKAGYLVIEEDTIVELAPMTTLDEKRMAANQVIDGQNGILM PGMINTHTHVGMIPFRSLGDDVPDRLRRFLFPLEQFMTKELVGCSSDYAIAEMLLSGITS FCDMYYFEDEIAKSCEKMSVRALLGETIIDMPTCDSPEPSGGLFYAETFIRKWQGHPLIT PMLAPHAPNTNSPEVLAKIIELSRRYQVPVTMHVAEMTYEMAEFEKAYQKTPIAFLEELG YLSEPFILAHCILATDEDLASLAATNGKARVAHCIGANTKSAKGVAPIKQMLDQGIIVGL GTDGPSSGNTLDLFTQMRMVANFHKTAHQDRSLFTAKEIVYLATMGGAKTLGLAEQVGSL EVGKKADITLIETQSVNMFPIFDAYSALVYSANASNVEAVWVNGQQLVANKELQQANLKE IKEKLYQAMNTFVKEAKKRAAL >gi|308151741|gb|GL476281.1| GENE 23 25936 - 27675 1758 579 aa, chain - ## HITS:1 COG:CAC0887 KEGG:ns NR:ns ## COG: CAC0887 COG1001 # Protein_GI_number: 15894174 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Clostridium acetobutylicum # 5 562 19 569 570 270 31.0 4e-72 MNVDVLLKNVWLYQTVTQTFVQRNVAIKNDKFYYIYEEENVNLQPKKTINAENQWMIPGL IDAHMHIESSMTTPTIFSKAVVRYGVTTVIADAHEMANVFGLEGLKAFMAAETELDIFHA IPSSVPSTTPELETTGGIIGLAEVAELLKEPKVICLGEAMNFKGISYEPDSLIRQIIDLC QKQRPTMPLEGHCPKIEDQELADFLYSGITSDHTHQFPKTLKEKIEAGVFIQFQNKSITP ENIQVIVDNDFYNYASIITDDVMADDLLKGHLNENVKKAVHAGLPIEKAIYMATYTPAKR MGLHDRGEIAPGKKADFLLLNDLESFDITTVYKSGKVVFEKGEPFHYPEKIEEFPATYQQ TIQCKKLTEEDLLLKVATTKETVRCNVIQKQEIGTFTERITKEIPVENGLLQWQKANCAL LIVMERYGKNGNISFSLMDQPLSEKGAIATTWAHDHHNLMVMGNTIEDILLAQNELLAMQ GGYLVASDQQVMATCPLPIGGILSQAPIEQLGASLQKVRQAMQALGYQNMNEIMSFSTLS LPVSPAIKVTDFGMMDTKSQRFYPLVFPEDGVLLHENTH >gi|308151741|gb|GL476281.1| GENE 24 27696 - 28760 1416 354 aa, chain - ## HITS:1 COG:AGl890 KEGG:ns NR:ns ## COG: AGl890 COG0687 # Protein_GI_number: 15890562 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 354 6 340 340 143 29.0 7e-34 MKKRVILGTLVAATLLMTACGNSEATTKSESKGGSNALVVSTFGLSEDIVKKDIIAPFEK ENEAKVTLEVGNSADRFTKLKNNPNAGIDVIELAQANAAQGGKEGLFEKITEKEVPNLSQ LTPGAKEVFESGAGVPIAVNSIGIVYNKEKLGKEIKNWDDLWSADLKGKISVPDVATTAG PLMLYVASEHAGQDITKDNGKAAFEAMKELKPNVVKTYSKSSDLANMFQSGEIEAAVVAD FAVDIIQGAAENVTYVVPESGTYANYNTVNIPKKAQNKETAFKFVNARISEESQKAKAIS LNEGPTNQQVTLSEKEAKNKTYGAIAERAKTVDFNFINSQLADWIDQWNRTMNQ >gi|308151741|gb|GL476281.1| GENE 25 28787 - 29827 1230 346 aa, chain - ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 3 346 6 340 342 300 46.0 3e-81 MTFVDLKDIRVSYDGKQDILKDLNISMEKGELVSLLGPSGCGKTTTLRVIAGLIKPNDGQ FFVDQEELTKVPVHKRNFGMVFQSYALFPHLTIAENVAFGLKLRKESKQTMDQKVTEMLK VCGLESLGDRYPKQLSGGQRQRVALARALIIEPKLLLLDEPLSNLDAKLRVAMRIEIKRI QQQLGITTVFVTHDQEECFSISDKVAIMNNGVIEQYDSPETIYRLPRTKFVAEFIGFENF FSVEKMEAGHYRTQTNQIVKTTNPEPNVTTTVATIRPEDIEIVSEAATNTVAGTVAVRTF LGKSYQYEVETALGTLLVNGTSEQLYETNETIHLAFPAEKLVILEK >gi|308151741|gb|GL476281.1| GENE 26 29866 - 30645 908 259 aa, chain - ## HITS:1 COG:SMb21275 KEGG:ns NR:ns ## COG: SMb21275 COG1177 # Protein_GI_number: 16264527 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Sinorhizobium meliloti # 10 256 10 256 259 189 44.0 6e-48 MRKQKGLSVIAILVFLFLFLPLCLIVVTSFGTAAAIQFPIKGFTLDWYAKALQSETFMDS FKLSLLIGVLATVLALIVGIPASYALARYSVRGRNFIKSFFLSPTVIPGIVVGYTLFQYI VIKLGLPVFQGLLMGHFLISLPYIIRVVGSSMEQLDYSMEEVAWTLGCTRLRAFIQIVLP NVSSGIFAAFMLAFVNSFNNVPVSMFLSGPGVTMLPTSLLSYMEYNYDPTVSAISVLLML LTMGLMFLIEKTLGLASIA >gi|308151741|gb|GL476281.1| GENE 27 30638 - 31474 887 278 aa, chain - ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 257 74 310 326 175 39.0 9e-44 MNKKVPYLIVAPGLVLLLFFLMIPLITSILPTIFTDHGLTLNQYVTFFKDDYNVSIFWRT IRVSLIVTGISIVLGIPTAYFIAGVSKKWRGFLMAMTLFPLLTNSVIRSFAWINILGKNG VVNTLLLKTGLIEQPLNLLYTEFAIIIGSVYLFLPTMIMTLVGVMENIEGEMLEAAETLG ANPMTAFRKIVLPLSIPGTIVGSILVFTGTLTAYTTPQLLGGNQKMMMSTFLYQKANTLG DWQSASVLAFIMILTTLIVMKGLDMVAKKVDRREANHA >gi|308151741|gb|GL476281.1| GENE 28 31681 - 32085 447 134 aa, chain - ## HITS:1 COG:no KEGG:EF1217 NR:ns ## KEGG: EF1217 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 233 97.0 2e-60 MSKCLGLLMILFVLSGCSGSRNSQQEVVIEKSANNDKARQFVDQKNPHLGTQLEAESYTK QEAIEFLQNGLGIPTNDSAFHYTFKQSNKGSYVVQIISEKNSVSKENELFGYYQVYQDGI IVKMMEKDQTFQEN >gi|308151741|gb|GL476281.1| GENE 29 32334 - 33053 743 239 aa, chain + ## HITS:1 COG:no KEGG:EF1216 NR:ns ## KEGG: EF1216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 239 457 97.0 1e-127 MNKKNLLTYQSMAALLLVFSLFSFAPSVSFATRSGKTPVSVELEIGGLPGDESVDDAIYP DLENPNTSFDLLFIPKEFTFETQAISGDLTAVPIRPSEGNTHTMRHFGMGDVRGALTGWH VTAEIPHMRNEAHSLLGIITFQLTGGYARYDKTLRRFFMTNTMYGLDFSEDPAAPDFPTN PIIIGNGATLMSNAGDRKGQGMWSGRMTDISLAIQTPVSQLFPGAYTGSIIWNLISGPA >gi|308151741|gb|GL476281.1| GENE 30 33087 - 33149 58 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRQIEGANSPYDIKKRLEE >gi|308151741|gb|GL476281.1| GENE 31 33167 - 34249 983 360 aa, chain - ## HITS:1 COG:no KEGG:EF1215 NR:ns ## KEGG: EF1215 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 360 655 98.0 0 MDTLYRSWQLSGWLYHDIFVIIVAIIFIVISGILVISLIRRRSTRRLVPYALILLVYLAV VHFAGLIFFGMFRSVTIEEKSATFYSEKTKGLTSIERMIIPNGRTNGISTSNSLFQVISV NSQTGERMWSKRLGWRDYLIGQTDQYVVLNNADNESIYLLDTKTGKKEFSEADLVKKFPE LKDYLSSNFVDYRFMDNRYLYIYGLNNRYYQLDLKNWQLKQNPTFKEVFQTQEAPKWTVD SNESQIGQELSSEERTTVQGKLEEQLIAPVLLGKKDEANYYVLSYKKRQSNQAIVGLYNW QKKTYEWQTPLLLTKENVPIEAFQVEDALFIKVPRYLYKINLNNGNQEYQFDYRWGQVIR Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:16:41 2011 Seq name: gi|308151740|gb|GL476282.1| Enterococcus faecalis TX4000 genomic scaffold Scfld64, whole genome shotgun sequence Length of sequence - 70760 bp Number of predicted genes - 70, with homology - 66 Number of transcription units - 41, operones - 19 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 42 - 752 773 ## COG4420 Predicted membrane protein - Prom 778 - 837 4.6 2 1 Op 2 1/0.286 - CDS 851 - 2017 971 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 2076 - 2135 7.1 - Term 2115 - 2162 14.2 3 2 Tu 1 . - CDS 2211 - 2591 580 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 2619 - 2678 5.0 - Term 2664 - 2712 10.1 4 3 Tu 1 . - CDS 2724 - 4115 1917 ## COG1823 Predicted Na+/dicarboxylate symporter - Prom 4335 - 4394 4.7 + Prom 3799 - 3858 3.9 5 4 Op 1 . + CDS 4099 - 4248 73 ## + Prom 4322 - 4381 7.3 6 4 Op 2 . + CDS 4410 - 4745 485 ## EF0743 hypothetical protein + Term 4749 - 4795 12.1 - Term 4730 - 4787 19.0 7 5 Op 1 . - CDS 4792 - 5178 639 ## COG4835 Uncharacterized protein conserved in bacteria - Prom 5211 - 5270 5.4 8 5 Op 2 . - CDS 5291 - 5722 195 ## EF0741 hypothetical protein - Prom 5781 - 5840 7.0 - Term 6031 - 6064 4.0 9 6 Op 1 . - CDS 6072 - 6716 969 ## COG1428 Deoxynucleoside kinases 10 6 Op 2 . - CDS 6725 - 7405 646 ## COG3201 Nicotinamide mononucleotide transporter - Prom 7522 - 7581 9.5 + Prom 7504 - 7563 8.2 11 7 Tu 1 . + CDS 7671 - 7787 99 ## + Term 7890 - 7943 6.6 - Term 7878 - 7931 14.2 12 8 Tu 1 . - CDS 7978 - 9564 1905 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 9586 - 9645 6.5 - Term 9638 - 9696 18.1 13 9 Op 1 1/0.286 - CDS 9761 - 10690 1213 ## COG0549 Carbamate kinase 14 9 Op 2 . - CDS 10702 - 11799 1204 ## COG2957 Peptidylarginine deiminase and related enzymes 15 9 Op 3 3/0.143 - CDS 11792 - 13168 1506 ## COG0531 Amino acid transporters - Term 13182 - 13226 7.6 16 9 Op 4 . - CDS 13235 - 14254 1246 ## COG0078 Ornithine carbamoyltransferase - Prom 14493 - 14552 11.8 + Prom 14442 - 14501 6.6 17 10 Tu 1 . + CDS 14533 - 15498 596 ## COG2771 DNA-binding HTH domain-containing proteins + Term 15506 - 15547 1.1 - Term 15486 - 15540 4.1 18 11 Tu 1 . - CDS 15541 - 15858 458 ## EF0730 hypothetical protein - Prom 15898 - 15957 4.7 - Term 15938 - 15980 11.1 19 12 Op 1 . - CDS 15998 - 16126 219 ## PROTEIN SUPPORTED gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 20 12 Op 2 2/0.143 - CDS 16127 - 17500 1758 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 17525 - 17584 5.6 - Term 17631 - 17690 13.9 21 13 Op 1 2/0.143 - CDS 17700 - 18788 1320 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 22 13 Op 2 21/0.000 - CDS 18807 - 20237 1808 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 23 13 Op 3 31/0.000 - CDS 20237 - 21706 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 24 13 Op 4 . - CDS 21706 - 22011 433 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - Prom 22130 - 22189 5.0 - Term 22205 - 22242 -0.6 25 14 Tu 1 . - CDS 22329 - 22439 181 ## - Prom 22532 - 22591 3.5 - Term 22527 - 22582 -0.8 26 15 Tu 1 5/0.143 - CDS 22593 - 24623 2601 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Prom 24655 - 24714 7.7 27 16 Tu 1 . - CDS 24749 - 27007 2346 ## COG0210 Superfamily I DNA and RNA helicases - Prom 27035 - 27094 6.3 + Prom 27036 - 27095 7.2 28 17 Tu 1 . + CDS 27172 - 28731 1414 ## COG0038 Chloride channel protein EriC + Term 28733 - 28776 12.6 + Prom 28735 - 28794 8.0 29 18 Op 1 10/0.000 + CDS 28867 - 29619 633 ## COG1349 Transcriptional regulators of sugar metabolism 30 18 Op 2 19/0.000 + CDS 29616 - 30533 957 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 31 18 Op 3 . + CDS 30557 - 32479 2476 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Term 32483 - 32518 6.0 32 19 Tu 1 . - CDS 32539 - 33201 674 ## EF0716 hypothetical protein - Prom 33221 - 33280 5.3 - Term 33229 - 33271 9.2 33 20 Tu 1 . - CDS 33313 - 34596 2066 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 34616 - 34675 3.7 + Prom 34935 - 34994 5.2 34 21 Op 1 . + CDS 35019 - 37235 1712 ## EF0714 hypothetical protein 35 21 Op 2 . + CDS 37290 - 37904 381 ## EF0713 hypothetical protein 36 21 Op 3 . + CDS 37886 - 38029 135 ## EF0713 hypothetical protein + Term 38044 - 38086 9.7 + Prom 38031 - 38090 3.0 37 22 Tu 1 . + CDS 38110 - 39144 995 ## EF0711 hypothetical protein + Term 39149 - 39184 6.7 - Term 39133 - 39176 11.0 38 23 Op 1 25/0.000 - CDS 39189 - 40916 2259 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 39 23 Op 2 . - CDS 40916 - 41182 433 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 41210 - 41269 5.7 40 24 Tu 1 . - CDS 41353 - 41544 380 ## EF0708 hypothetical protein - Prom 41576 - 41635 7.1 41 25 Tu 1 . + CDS 41544 - 41642 56 ## + Prom 41651 - 41710 4.2 42 26 Tu 1 . + CDS 41847 - 44087 1680 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 44095 - 44136 4.2 + Prom 44119 - 44178 11.1 43 27 Tu 1 . + CDS 44282 - 44596 452 ## EF0705 hypothetical protein + Term 44603 - 44642 5.1 - Term 44581 - 44637 7.2 44 28 Tu 1 . - CDS 44639 - 45670 1135 ## EF0704 putative lipoprotein - Prom 45711 - 45770 5.0 45 29 Op 1 . - CDS 45776 - 46423 783 ## COG2323 Predicted membrane protein 46 29 Op 2 . - CDS 46439 - 46882 463 ## EF0702 hypothetical protein - Prom 46913 - 46972 6.1 47 30 Op 1 . - CDS 47366 - 47860 382 ## gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 48 30 Op 2 . - CDS 47868 - 49136 567 ## PSM_A2062 adenylate/guanylate cyclase - Prom 49195 - 49254 9.2 - Term 49160 - 49209 11.5 49 31 Op 1 . - CDS 49298 - 49492 115 ## gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 50 31 Op 2 . - CDS 49473 - 50477 715 ## LKI_07470 hypothetical protein 51 31 Op 3 . - CDS 50524 - 52272 708 ## COG1479 Uncharacterized conserved protein - Prom 52434 - 52493 7.6 + Prom 53105 - 53164 10.2 52 32 Tu 1 . + CDS 53191 - 53487 305 ## gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 + Prom 54011 - 54070 3.1 53 33 Tu 1 . + CDS 54161 - 54415 122 ## gi|229546532|ref|ZP_04435257.1| hypothetical protein HMPREF0349_1750 + Term 54446 - 54500 4.5 - Term 54434 - 54487 8.1 54 34 Op 1 . - CDS 54524 - 55372 475 ## COG0582 Integrase - Prom 55424 - 55483 2.5 55 34 Op 2 . - CDS 55507 - 57081 1814 ## COG4108 Peptide chain release factor RF-3 - Prom 57120 - 57179 6.3 - Term 57200 - 57248 10.2 56 35 Op 1 1/0.286 - CDS 57255 - 58634 1684 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 58654 - 58713 3.9 57 35 Op 2 . - CDS 58809 - 59954 1422 ## COG0628 Predicted permease - Prom 59988 - 60047 5.0 + Prom 60010 - 60069 6.3 58 36 Tu 1 . + CDS 60099 - 60530 546 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 60554 - 60608 20.1 - Term 60540 - 60594 20.1 59 37 Op 1 . - CDS 60618 - 61151 422 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E - Prom 61279 - 61338 5.0 60 37 Op 2 . - CDS 61340 - 62317 1094 ## COG3684 Tagatose-1,6-bisphosphate aldolase 61 37 Op 3 7/0.000 - CDS 62314 - 62775 606 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 62 37 Op 4 19/0.000 - CDS 62802 - 64220 1825 ## COG1299 Phosphotransferase system, fructose-specific IIC component 63 37 Op 5 . - CDS 64225 - 65151 1064 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 65210 - 65269 6.4 + Prom 65217 - 65276 11.7 64 38 Tu 1 . + CDS 65329 - 66075 558 ## COG1737 Transcriptional regulators + Term 66097 - 66144 6.1 - Term 66085 - 66131 12.2 65 39 Op 1 5/0.143 - CDS 66135 - 66779 964 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 66 39 Op 2 1/0.286 - CDS 66852 - 67631 778 ## COG0510 Predicted choline kinase involved in LPS biosynthesis - Prom 67679 - 67738 5.1 67 40 Op 1 7/0.000 - CDS 67760 - 68971 1030 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 68 40 Op 2 . - CDS 68973 - 69710 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 69735 - 69794 5.3 + Prom 69763 - 69822 5.7 69 41 Op 1 . + CDS 69924 - 70349 523 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 70 41 Op 2 . + CDS 70350 - 70694 327 ## EF0686 hypothetical protein Predicted protein(s) >gi|308151740|gb|GL476282.1| GENE 1 42 - 752 773 236 aa, chain - ## HITS:1 COG:mlr4962 KEGG:ns NR:ns ## COG: mlr4962 COG4420 # Protein_GI_number: 13474144 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 32 225 92 285 307 167 45.0 1e-41 MKQSKNKQVVIGESTKKNIYLQDIEQETQAFILQNNPQLTAESMITLAELLNYRLDYMKQ LVANDSEKIQQLNELVVQHIKEDKLISNNMNEKMEKKLTFGQRAADTIAKFGGSWVFIGF FCFVLIAWIVINSTTLLGQPFDKYPYILLNLALSCLAAIQAPIIMMSQNRQEARDREQAN NDYKINLKAEVEINLLHEKMDYIINNQLENLVKIQNIQIELLGELQEQLAATSEKE >gi|308151740|gb|GL476282.1| GENE 2 851 - 2017 971 388 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 74 379 85 386 391 143 28.0 4e-34 MRKRHAKKRHGGVNWLFIVCLLVVIGGSGYLIKTFFFTRDSQVSQESKVVLEEDRRSDNY ANLTKEIVAPDSGELDQKIQETNYIGSALIIKDDQVLVNKGYGFANFEKQQANTPNTRFQ IGSIQKSFTTTLILKAIEEGKLTLDTKLATFYPQIQGAEDITISDMLNMTSGLKLSAMPN NIVTDEEIIQFVKQNTIQVNKGKYNYSPVNFVLLAGMLEKMYQRTYQELFNNLYHKTAGL KNFGFYETLLEQPNNSTSYKWTEDNSYNQVLSIPAASFAHEFGTGNVDMTTGDLYWYLHQ LMSGHLVSTALLQKLWTSSQQSSYHGGIYVHDNYLRLHGVEAGQQALVLFSKDMKTGVIL LTNCVNPAKYKELIGSLFHDVTNLPVKF >gi|308151740|gb|GL476282.1| GENE 3 2211 - 2591 580 126 aa, chain - ## HITS:1 COG:SA1340 KEGG:ns NR:ns ## COG: SA1340 COG0346 # Protein_GI_number: 15927090 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 7 120 6 121 123 81 40.0 3e-16 MFSNQVKIMLYVNNVEESSQFWQTFGFVEKEREEVDGTLVVEIAPSESAEAIIVLYDLAF IQKHSPEVAGNTPSLMFASDDIIGLYKKMQEAGVTVGEMVQLPTGLVFNFADNDDNYFAV MGQESK >gi|308151740|gb|GL476282.1| GENE 4 2724 - 4115 1917 463 aa, chain - ## HITS:1 COG:BS_yhcL KEGG:ns NR:ns ## COG: BS_yhcL COG1823 # Protein_GI_number: 16077978 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Bacillus subtilis # 1 461 1 460 463 424 57.0 1e-118 MTTFITVLVILAFIAVLFGFYQMQKKHLKFSTRVFSALGVGIVLGAIIQFAFGTDSKITT QSMEWIGIVGNGYVAFLQMLVIPLVFVSIVGAFTKMKESNKLGKISFNVLATLLGTTAVA ALVGIGTTLAFGLQGAKFTQGAAETSRIAELATRQDAIQDLTIPQQIVSFIPKNVFADFA GTRPMSTIGVVIFAAFVGVAYLGVRRKAPKEAEFFANLIDSLYKITMRIVTLVLRLTPYG VLALMINVVATSDFVAIINLGKFVLASYVALIIVFAIHMLILITLKVNPVTYLKKVFPVL SFAFTSRSSAGALPLNIETQTKALGVDDATANFAGSFGLSIGQNGCAGVYPAMLATIVAP TVGIDVFSLQFILMLVAVVTISSFGVAGVGGGATFASLIVLGAMNLPVAIVGLVISVEPL IDMARTAVNVNDSMVAGVLTSARIHELDRDVLNDRDVVLDANI >gi|308151740|gb|GL476282.1| GENE 5 4099 - 4248 73 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMNVVILVPPYVFNDKYIKGSKGSRYSLSSKYPENSKLFPVIVLLYLIL >gi|308151740|gb|GL476282.1| GENE 6 4410 - 4745 485 111 aa, chain + ## HITS:1 COG:no KEGG:EF0743 NR:ns ## KEGG: EF0743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 210 97.0 2e-53 MQKICWILSVNRDGAMLYVGSPANGGPWLFSNKEQQNIKAFFQPTYEIDFISYDVLSEEV PEAAFILYNEILAPYLPEKITKVGQPIAYVDIATKNYEQFKKALVAKSSQE >gi|308151740|gb|GL476282.1| GENE 7 4792 - 5178 639 128 aa, chain - ## HITS:1 COG:SP1558 KEGG:ns NR:ns ## COG: SP1558 COG4835 # Protein_GI_number: 15901401 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 5 128 128 92 44.0 1e-19 MEIKRQQEIVEAYHYDMRVPDSEVETDLRVSFSPIEVEEENYPENSSALVARLEFRIVFD EFVLSGAISQINHIIDRKIEKQEDISQEEVDELVRPLFSIVERLSYEVTEIALDRPGVQL NFQQSEEA >gi|308151740|gb|GL476282.1| GENE 8 5291 - 5722 195 143 aa, chain - ## HITS:1 COG:no KEGG:EF0741 NR:ns ## KEGG: EF0741 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 240 96.0 1e-62 MGQIWFERILRWRKKAQRFLQGRYARFDELNRTLLLTSVVLALINIFTGYLWVRLLILIT VAYVYYRFFSKHIHPRLNENQRFILRKQRLMQKVHAFRKRHLTQKRYRYFKCPKCQQSLR APKGRGTIKVTCSNCRNQFIKKV >gi|308151740|gb|GL476282.1| GENE 9 6072 - 6716 969 214 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 213 1 213 217 293 71.0 2e-79 MAVIVLAGTIGAGKSSLTALIANRLGSEAFYESVDDNEVLPLFYAEPEKYAFLLQIYFLN KRFDSIKQALTHENNVLDRSIYEDSLLFHLNADLGRANETEVKVYDDLLQNMLQELPYAA HKKRPDLLVHIRISFPKMLERIKKRGRPYEQIETDPTLYDYYQMLNERYDQWYEDYDESP KIQIDGDKYDFVEDPEACQYVLALIEKKIEELER >gi|308151740|gb|GL476282.1| GENE 10 6725 - 7405 646 226 aa, chain - ## HITS:1 COG:PM1838 KEGG:ns NR:ns ## COG: PM1838 COG3201 # Protein_GI_number: 15603703 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pasteurella multocida # 6 219 13 226 234 87 29.0 2e-17 MNDFKGWETRSYLFLALMVGVQLIAFAINPSNWITLVGGLAGIICVNLIAQGKVSNYIFG LISAVIIGYFGLVTRVYAEVLLQSFYIIMDITGLYAWLRASEDGSGQVTEVKVLKGIQWL YAFFTWLLIGVAAYILLGFVNDAQQTLDAITFSVSATGMLLMIKRYQSQFVFWLLGNIFS ILLWFRVGTHAGGDYAIFVMYCMYTFNSIFGMFNWLKIKNKMEKNR >gi|308151740|gb|GL476282.1| GENE 11 7671 - 7787 99 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIPAADPFTTVALQINVAKAEATVHIYASNTAIVHSFY >gi|308151740|gb|GL476282.1| GENE 12 7978 - 9564 1905 528 aa, chain - ## HITS:1 COG:lin0842 KEGG:ns NR:ns ## COG: lin0842 COG0154 # Protein_GI_number: 16799916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Listeria innocua # 29 508 141 631 639 273 38.0 5e-73 MSKFLKVIGIIAVLLVIIGAAAYWFILKKFTPEAETPAMYNQERIVKTIEDQLKETDVQK ARTKAPLIIEKNITELQQAIADGALTYEELTAFYLDRILQFDQIDNGMNSISEINPQAIK EAKAFDQQASQTPKKPLYGIPVTLKENINTTNMISSAGAYALRTFKPKEDAEVVKKLTEA QALILGKVNLSELANYMSMKAPSGYSSKHGQTLNPYGPLKITPSGSSSGSGASVTMNIGA FSLGTETMGSIVSPASHQSVVGFKPTHSSVSGEGVLPLAPSLDTVGPIARSVVDAAQGYN AFKKDTVPSIDSTKFTKNNLQGQRIGLLEMPSAEEEFATAKKALQKAGAEVIPVTPDMEG IDGGKVISNEFKFALEEFAKRYDLPFKTLEELIAYNQQDKKVRAKYGQDLLEADVKKKQP DKEIIQTTIKKAQQTFDALLKKQQLDGYAFIDSEGTGLSAVAGYPELTVPLAKNSEGQPY GLTFTQTANKEQTLFEQAYSFEQSTKGRIVLSDNELLANSKKINRDEQ >gi|308151740|gb|GL476282.1| GENE 13 9761 - 10690 1213 309 aa, chain - ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 3 309 4 310 310 300 53.0 3e-81 MSKIVIALGGNALGNSSKEQLAKAQTAAKSIVDLIEQGHQVVIAHGNGPQVGKIRLAFEE TSQSPEDVVPFPECTAMSQGYIGYHLQQAIDEELVARNLGEQPVVTLITQVVVDPKDPAF TKPTKPIGGYYDEETAKQLMAETGNVYQEDAGRGWRRVVPSPKPVDIYEKVSLRTLVDAG QIVIACGGGGVPIAYDGPVYHGVDAVIDKDFAAAKMAELIEADVFVVLTAVEHVFVNFGQ ANQQALTDVTVTAMQQYIEENQFAPGSMLPKVEAAISFAESKPNRQAIIGLLELASEAIK GESGTRITQ >gi|308151740|gb|GL476282.1| GENE 14 10702 - 11799 1204 365 aa, chain - ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 364 1 364 366 654 83.0 0 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFT PMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWG GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG RNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQN SPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDIC IASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQ QEPKR >gi|308151740|gb|GL476282.1| GENE 15 11792 - 13168 1506 458 aa, chain - ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 448 4 449 466 583 73.0 1e-166 MEGKKKFSLTSAILSVICVVFVAEAAAPVAAIGNSQFFWWIFLLIAFLLPYGLISSELGT TYIGEGGIYDWVTKAYGHRWGARVSWYYWINYPLWLASLAVMTPELLTTITGIKFSTPMM IIVELIFTWIVVWISFYPVSDSIWILNGAAVIKMVLAVLIGGLGLYVALTKGVANEFTLK SMLPTFDLRSLSFISVIIFNLLGFEVICTFADDMENPKKQIPQAIVAAGLVIAAIYIFSA FGIGVAIPTDQISTGSGMMDSFKLLTGSTEGWFIMLMAFLFLLTLFGNMISWSLGVNNTA CYAAENGDMPKFFEKRSKKNDMPIGAALMNGIVASVVIVLAPILPNQDLFWAFFSLNVVL FLLSYIPVFPAFYKLRKIDPDTPRPFKVNGKPGFLKVLVVLPMIMIIISLIFTAVPLDFS PAALNEKLPITIGAIIFILFGEVIIYVKKIKKGTKENG >gi|308151740|gb|GL476282.1| GENE 16 13235 - 14254 1246 339 aa, chain - ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 334 6 338 340 554 79.0 1e-157 MKRDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFE TAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIP VINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAELSEE ERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTS IRGLLVYLMNDYEAKNPYDLIKQAEAKKELEVFLDTQSI >gi|308151740|gb|GL476282.1| GENE 17 14533 - 15498 596 321 aa, chain + ## HITS:1 COG:L0226 KEGG:ns NR:ns ## COG: L0226 COG2771 # Protein_GI_number: 15673683 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Lactococcus lactis # 1 315 1 325 328 209 41.0 8e-54 MTFVFIYNILLIILYSFTSTFTLNLYLKNKQPIFLLLLFLMVIFICDNVIVYMTEFINSF ATEYNQTFMTAPFLKTIIFICCNFAYLAIINTISGRPFKNYQFVWLFLIGLWMLAIPFSQ NSALKVWLYYLPNQLFLIYLGCYALYQLRIDPLSALAKKYLRFIGWLSIGFGVAILLEDT FVIFNIDQYSDIVFKINNRNVSEDIYTIILSIAIIYFCNRDFPLSVLEKDAAKLEENQSD EPVLLAPFCDAYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNK RAEVFVSYQLFSQQQTEHLAR >gi|308151740|gb|GL476282.1| GENE 18 15541 - 15858 458 105 aa, chain - ## HITS:1 COG:no KEGG:EF0730 NR:ns ## KEGG: EF0730 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 179 100.0 2e-44 MEYVTTLEELEEKITDNRLQAVFLTAKNCSVCTVDKPIVEKIATKYEFPTYIAEADKSPE IIGQLNAFSAPTIILYYEGKEIHRQAKIINFQEIEKRVRQVQENS >gi|308151740|gb|GL476282.1| GENE 19 15998 - 16126 219 42 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 [Enterococcus faecalis TX0104] # 1 42 1 42 42 89 100 6e-17 MNEKEKMLELIKKKQGGGRSKKMETPKNDRKNMRKGPKIFNK >gi|308151740|gb|GL476282.1| GENE 20 16127 - 17500 1758 457 aa, chain - ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 5 452 7 454 458 485 54.0 1e-137 MKNYPVKKNDVIEVEIIDLTHEGLGVAKVDHYPLFIENALPGEKLEIKVLKTGKSFGYGK VLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAKLPEVPVLP TIGMNDPWHYRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDI MRKYSVKPYNESDNTGNLRHIVVRRGYHTGEMMVVLITRTPKLFPISKIVPDILEAIPEV VSIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKV KEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATF TAGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARD IALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTKAVD >gi|308151740|gb|GL476282.1| GENE 21 17700 - 18788 1320 362 aa, chain - ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 348 6 337 340 407 61.0 1e-113 MKKARVIYNPTSGKELIKKNLADILSILEECGYEASAFATTPEENSARNEAHRAARAGFD LLVAAGGDGTINEVVNGIAPLKRRPKMAIIPAGTTNDYARALKIPRDNIVKAAEVIKKNQ TVKMDIGQAGKNYFINIAAGGHLTELTYEVPSELKSIFGYLAYLAKGAEMLPRVKPIKMR MTYDEGVYEGNASMFFLGLTNSVGGFEQIVPDAKLDDGKFSLIIVKTANIFEILHLVALM LNGGKHVEDHRLIYTKTSYLHAETLEKNNKMMINLDGEYGGDAPMTFKNMHQHIEIFANG DALPSNAIMGSVLTGSDEIVVESEDEEEEAYNEASKEFVKEVERLTDEDIDGDGKIAEKE KH >gi|308151740|gb|GL476282.1| GENE 22 18807 - 20237 1808 476 aa, chain - ## HITS:1 COG:lin1866 KEGG:ns NR:ns ## COG: lin1866 COG0064 # Protein_GI_number: 16800932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Listeria innocua # 1 476 1 476 476 725 77.0 0 MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNSNTNVVDWSYPGVLPVMNKGALEFGM KAALALNCEISKETHFDRKNYFYPDNPKAYQISQFDQPIGHDGWIEIEVEGKKKKIRIER VHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMRSPEEAYAYLEALRSIIQFTEV SDVKMEEGSMRCDANISLRPYGQEEFGTKAELKNLNSMNFVKKGLAYEEKRQAKVLLSGG EIQQETRRFDEATSTTLLMRVKEGSSDYRYFPEPDVPRFSIDDEWIEKVRASLPEMPASR RARYISELGLPEYDAMVLTLTKEMSDFFEATLANGADAKQASNWLMGEVSAYLNSEKVEL ADTKLTPENLAGMITLINDGTISSKIAKKVFKELIENGGDAKEVVEAKGLVQLSDPAQLL PMINEVLDNNQQSIDDFKNGKDRAVGFLVGQIMKATRGQANPGVVNKLLQEELSKR >gi|308151740|gb|GL476282.1| GENE 23 20237 - 21706 399 489 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 158 28 9e-38 MEKLYDKSLTELHDLLVSKEITAVDLTEETLNRIQDTEEQLGSFITVSEEKAMALAKAID LKGITESNPLAGIPIGIKDNIVTKDILTTAGSKMLHNFDPIYDATVMDKVYQADMIPVGK LNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQ PAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISGYDEKDGTSA GVSVPDFTADLTGDIKGMKIALPKEYLGEGVQPDVREAVLKAAETFKSLGATVEEVSLPH SKYGVAVYYIIASSEASSNLQRFDGIRYGYRSDNVQNLEDVYVNSRSEGFGTEVKRRIML GTFSLSAGYYDAHFKKAGQVRTLIKQDFENVFADYDLIIGPSTPTVAFGLGENINDPITM YMNDILTIPVNLAGLPGMSIPAGFSEGLPVGLQIIGKHFDEHTMYKAAYAFEQATDFHTK KPVILGGND >gi|308151740|gb|GL476282.1| GENE 24 21706 - 22011 433 101 aa, chain - ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 3 97 4 98 101 108 64.0 3e-24 MAITEEQVKHVAKLSKLSFSEEELADFTNQLDKIIDMVELLEEVDTTGVPFTSNVNESIN VMREDVATPGMDRKELMRNVPESENGYIKVPAIMDNGEAGA >gi|308151740|gb|GL476282.1| GENE 25 22329 - 22439 181 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVEAALGLMIGFATLVVTIIFGILALVLDNKNNRS >gi|308151740|gb|GL476282.1| GENE 26 22593 - 24623 2601 676 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 671 2 663 671 801 59.0 0 MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELK IDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPK QSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFVLQDE LGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSRASLH NADFIQMKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEMPTHCPICHSELVHLD EEVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKGLVKDVADLYFLTEE QLMTLDKIKEKSANNIYTAIQGSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSR ATAEEIVALDSIGETIADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPF KDKTVVLTGKLTQYTREEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVS VWNEQEMVDALDASHF >gi|308151740|gb|GL476282.1| GENE 27 24749 - 27007 2346 752 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 7 751 4 771 772 886 59.0 0 MTQKHALVQGMNPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILA ITFTNKAAKEMKERVNKLLETGGEDVWVSTFHSMCVRILRRDVDQIGYNRNFTIIDPSEQ KTLMKRILNDLNIDSKKYDPRSILGTISNAKNELQTPEKVAEMQGSLYEEIVAKCYEAYQ KELRKNQCMDFDDLIMNTIRLFNEQPDTLAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAA RFKNLCVVGDADQSIYGWRGADMQNILDFEKDYPDASVILLEQNYRSTKNILAAANDVIK NNRNRREKELWTENIDGEKIVYYRGDTERDETQFIVSQIQKEMRENDRIYGDFAVLYRTN AQSRVVEEMLLKSNIPYTMVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRG IGKSSIEKLRLFADTHGWALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTIT ELVKETLQRSGYREALMAQNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKL ADFLTDLALVSDLDNLEESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRAMLEESE LEEERRLAYVGITRAEEALFLTNAYSRTLYGRTQYNRPSRFLEEIEAERLMKQGAAANLQ KAPARTFDPKVFKPSASKPAYTQPATKSVSNKVASGGEKVSWQAGDKVQHKAWGVGTVVR VGGSAKDLELDIAFPEKGIKRLLAAFAPIEKI >gi|308151740|gb|GL476282.1| GENE 28 27172 - 28731 1414 519 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 36 492 42 499 516 324 46.0 3e-88 MNNDVHEIKQLDGTRIGFILKGIVVGILVGFVVSLFRLGIEKIGEQVVHLYQTFHEKPFW MIPWFLFSLVLAYLLGRLIKSEPAIKGSGIPQVEGQLQSQLEIHWFPVLWKKFIGGILAI SPGLFLGREGPSIQLGAVVGQGYSQWRQSTKSEEKILISSGASAGLAAAFNAPIAGLLFV LEEVHHSFSPLVWLTSFSAAISANFVSLHFFGLQPVLYIGPVKSLPLEYYWTLVLLGVLL GLLGWIYQKTLLSLPKVYGKIKGLSSNYYGFVPFILILPIGYFFPHLLGGGNQIVLALGN QPATIWALVGLLVLRFVFSMVSYGSNLPGGIFLPILTLGAIIGTLYGSLLVQYVGMDPIF VKNFLIFSMAGYFTAIGKAPLTAIILVTEMVGNFSHLMSLGVVALVSYITIDSLGGKPIY ESLLERLVPSKVSNIRGHKTIIELPITAESSLDDTMVRDFVWPKQMLLTSIRRGESEILT HGDTVMHVGDVLIILTDEKLAYQVKKEIYQKTLPNDLVN >gi|308151740|gb|GL476282.1| GENE 29 28867 - 29619 633 250 aa, chain + ## HITS:1 COG:lin2431 KEGG:ns NR:ns ## COG: lin2431 COG1349 # Protein_GI_number: 16801493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 250 1 250 250 221 48.0 8e-58 MLTEERHQKILQLLDQKSVVKSQELASLFNASESTIRRDLQELEDANLLERIHGGAKRIL NLGFEQNMTEKSIKNTHEKQKIASLAASCVQDDDMIYLDAGSTTLEMIPFLVGKQIHVVT NSVHHAAKLSDMEIPTIMLGGTLKLSTKAIIGATSMEQLQHFRFNKAFLGTNGAHLEFGL TTPDPEEAALKALAIHQAETAYVLLDHTKFNEVTFTKVEELESVTLLTDYCPAESLQGFQ QKTILMEANK >gi|308151740|gb|GL476282.1| GENE 30 29616 - 30533 957 305 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 367 63.0 1e-101 MIYTVTLNPSIDFIVHVDHLQIGDLNRMTNDFKLPGGKGINVSRILKRMETESTALGFLG GFTGSFIADWLKKEEIQTNFTPVSADTRINIKLKSDTETEINGLGPALTNEEIQELKQAV SRVQAGDIVVLSGSTPASLRKGFYEELIQIVKEKGAEFVIDTTGEDLMNALSQKPLLVKP NNHELAELYHTTFTSVEDILPYGHRLLEEGAQHVIISMAGDGALLFTTEGVYRSNVLKRP LKNSVGAGDSMIAGFIGNFSKTQDPLEAFKWGVACGSATAFSDDLASEDFIQELIHEVTI EKISE >gi|308151740|gb|GL476282.1| GENE 31 30557 - 32479 2476 640 aa, chain + ## HITS:1 COG:SPy0855_3 KEGG:ns NR:ns ## COG: SPy0855_3 COG1299 # Protein_GI_number: 15674888 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pyogenes M1 GAS # 299 634 2 358 360 422 65.0 1e-117 MNINDLLIKDVMIMDLQATDKKGAIDEMVQKLYDGGRISDIDTYKEGILKREAQTSTGLG DGIAMPHAKNSAVKEPTVLFAKSKKGVDYEALDGQPTYLFFMIAAPEGANDTHLQALAAL SRLLIDPEFVGKLKEAETPEAVQALFQAAEDQKEAEEKAEQEQTTPAPESNRKYIIAVTA CPTGIAHTYMAEDALKKKAKEMGVDIKVETNGSEGIKNRLTAEDIARADGVIVAADKKVE MNRFDGKKLVNRPVSDGIRKTEELINLAISGEAPTFHGSDSAASDQEDSAEGSIGSRIYK DLMNGVSHMLPFVIGGGIAIALSFMIDQFIGVPQDQLANLGNYNDVASWFNQIGGAAFGF MLPVLAGFIASSIGDRPGLVAGFAAGALANAGGAGFLGALIGGFLAGYVVVLLRKVFKGL PKSLDGIKTILFYPVFGLIITGLLMLVINIPMKAINDALNHFLLGLDGTNAALLGALLAG MMAIDLGGPVNKAAYVFGTATLASTVAEGGSVVMASVMAGGMVPPLAIFVATRLFKNKFT KDQQDAGLTNIVMGLSFVTEGAIPFAAADPLRVIPSFVVGSAFTGALVGAFGIKLLAPHG GIFVVFLLSNPLLYLLFILIGAIISGIVYGLLKKPVEVPA >gi|308151740|gb|GL476282.1| GENE 32 32539 - 33201 674 220 aa, chain - ## HITS:1 COG:no KEGG:EF0716 NR:ns ## KEGG: EF0716 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 402 99.0 1e-111 MDKNYSKIKYGLVVFGILCLTYNLWEFFTAKYSTKQGVTFVIECLLGIGLIFLPDLVNKF LKIIMPPTIVYFYWFFLFISVFLGTSLHMISIISFWDKILHFVSPMLLTAVGYGIAGFLL KKTKYADVSPWLFLLFGFAFAGLCGVFWEFWEFICDSLGNMNLQRYNMSNGQPFIGRAAL MDTMGDLFTNTLGAFVMGVYTYIRSKGNPEYLENYAMKRK >gi|308151740|gb|GL476282.1| GENE 33 33313 - 34596 2066 427 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 427 456 63.0 1e-128 MSAKWEKKGTNDGVLTFSIEQAVIEKGLTQAFNKVKKNLNVPGFRKGKVSRTVFNRMYGE EALYEDALNAVLPEAYEAAVLEAGIEPVAQPKIDVESMNKGEDWVITAEVTVKPEVKLGE YKNLTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFE GGKGENYSLELGSNSFIPGFEDQLVGKKAGEEVEVNVTFPEDYQAEDLAGKEAVFKVTVH EVKAKELPELDDEFAKDVDDSVESLDELKEKFRKELTEAKEAAAEEAKDEEAIRLAVENA EIVELPHVMVHDEVHRSMDEFLNNMQRQGISPEMYYQLTGSTEEDLHKQFEGEAETRTKT NLVIEAVAKAENIEVTQEDIDAEVKDLAEQYNMPEAQVRKVLNNDMLEHDIRMKRAVETI TETAVEK >gi|308151740|gb|GL476282.1| GENE 34 35019 - 37235 1712 738 aa, chain + ## HITS:1 COG:no KEGG:EF0714 NR:ns ## KEGG: EF0714 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 738 26 763 763 1231 99.0 0 MIAHSETLNPTTHASTFSETFTSVSTEQQTTQATDIVEQETEQTHASSENDEPMAPTPAS VSVGNSTLKSTLSTGTYNQDIITLSYEYSVTLIGLAINDRPIIAIQLPTEISSQLDNDTL KQQDFLTLLTGTVSYPGTATQDIHSSTNGVSLSYSSTYHSVYLTFPSSTLVLLPGTKWSA AISFDVGALYKRGISIPPALNGKDYPIRGTFTDVGTGLGAINIIIGNNTKTGVISKAQLS LGNYPVPQVTPAKLTQPNHLDTTVTGTIQQVQDPNYNYSVQLTLNRHDGTTTPIVVKGIS VDAAGNFSTSLASPLEYGDTLSTIVFARSKTSTDYIQSSPSADQSVNWSIQPVTNVVANA GSTQLSGKASQVSNGTYQVKVQINGGSIYTTSLDSNGHFQFANLPTFQGGETVSLWVQGL SNRTGLPLLTSSTVSQTVAYSVPQLTVTQIIERKNAQGLWEAANSVVSGQIIRFTLTTRL TNQPATWMNQQLRATVPKGLSQLSAATLTKQSAAGLSTPIAGLQLLTDSSTGLPYWSYHN SLPADNFTEANTQFTLQYTATVTEEWINQFLLFSSTVTGNDGGGTPITPITKEQSLPTKN GTLRFVQMPTTVSFKNLPFPSKRTIYSPSTISAPFLIADGRVAKTPWHLLVRESQPMHST STNKTIQQAFIYRKNGSDFPLSSLATEVYQYTATDDNNVEIPWNQQNGLFLSVAPDLNLT VKESYTAELQWILSDTPL >gi|308151740|gb|GL476282.1| GENE 35 37290 - 37904 381 204 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 245 294 99.0 1e-78 MKKIVRISSILFVATPLMLLNSPKVEAAQVASIQSNADITFALDNTVTPPVNPTNPSQPV TPNPADPHQPGTAGPLSIDYVSNIHFGSKQIQAGTAIYSAQLDQVQNSTGDLISVPNYVQ VTDKRGLNLGWKLSVKQSAQFATSDSTPAVLDNASLTFLAATPNSTQLLSLAPLTVPVTL DPTLVPPLLLWRLPLFQQEWALGH >gi|308151740|gb|GL476282.1| GENE 36 37886 - 38029 135 47 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 199 245 245 78 100.0 1e-13 MGTWTLAFGSGATAAQGIQLTVPATTKKVAAKQYKTTLTWILDDTPL >gi|308151740|gb|GL476282.1| GENE 37 38110 - 39144 995 344 aa, chain + ## HITS:1 COG:no KEGG:EF0711 NR:ns ## KEGG: EF0711 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 31 344 1 314 314 579 98.0 1e-164 MNQQLFKWLHAVSVIIFLFFIGSYSVEASEITFSVKAILPDNQRTKETSYFDLRVAPNQT QKLQIELTNQTANDITVLASANAAITNDNGLADYSHAETKKDPSAPFTFNEIAQLPKEIQ LPKHSTKTVECQLILPEKPFNGYVLGGLYFEQKSDEQPAHSENGVAINNRFSYVVGVLLS ETDEPVQPELSLNEVKTDQANGRNRVLMNLQNKQAAMIKKLQVDASLYYEKEAKPRYENH QESLTMAPNTNFNYRIDLKEQPFVPGNYTVKIKVNDGYQDYSWEKHLVIQEKEAKKYNAT AVNLPPEKHTNFPWKLVSSITLVFLFILGSTIYYFKKKIRESQQ >gi|308151740|gb|GL476282.1| GENE 38 39189 - 40916 2259 575 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 577 861 78.0 0 MSEMLKGIAASDGVAVAKAYLLVQPDLSFNKTSVEDTDAEATRLDDALAKSTEELQAIRD KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIQDNKVNAEAALKEVTDMYIGMFEAMD DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVIVVAHDLTPSDTAQLDRTYVKA FVTDIGGRTSHSAIMARSLEIPAIVGTKEITDKVKAGDILAVNGIIGDVIIDPTDAEKSE FEAEAKAYADQKAEWDKLKNAETVTADGKHVELAANIGTPKDLEGVHKNGGEAVGLYRTE FLYMDSSDFPTEEDQYQAYKAVLEGMEGKPVVVRTMDIGGDKELPYLTLPHEMNPFLGYR ALRISLSELGDGMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEDEKQKLVNE GVEVSNDIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLLGMGLDEFSMSATSILKTRSL MKRLDTTKMAELADRALKECDTMEEVVALVEEYTK >gi|308151740|gb|GL476282.1| GENE 39 40916 - 41182 433 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 76.0 3e-26 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSD VTITVDGADEAEGMAAIVETLQKEGLAE >gi|308151740|gb|GL476282.1| GENE 40 41353 - 41544 380 63 aa, chain - ## HITS:1 COG:no KEGG:EF0708 NR:ns ## KEGG: EF0708 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 108 100.0 8e-23 MAENPFVEKIASLKAGEISELIVEQNEFFQFRDAWISLPDRAEIVGEAGLNGRIIYRYQK EEE >gi|308151740|gb|GL476282.1| GENE 41 41544 - 41642 56 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISPLFLLNINSYSLLENGAIVCKKNRIFAFF >gi|308151740|gb|GL476282.1| GENE 42 41847 - 44087 1680 746 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 57 708 124 788 815 651 52 0.0 MICQNCQQNEATIHLYANVNGQRKQLDYCQSCYQKLKNQANNSPQNMGQDPFGFGSLDDL YRSLSRQMQQGNPYEQQTPPTQFGDGGNGGQPPRGGAGAGQGLLGEYGINITEAARQGDI DPVVGRDQEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLLDKEV IRLDVVSLVQGTGIRGQFEERMQKLIEEITEAENVILFIDEVHEIVGAGAAGDGNMDAGN ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVQVDEPTVAETITILHGLQKRYE DYHHVKYTDEAINAAANLSNRYIQDRFLPDKAIDLLDESGSKMNLTIQLVDPKTIDKKLA EAEQQKQQASAEEDFEKAAYYRDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIP VGDLKEKEQTQLKNLAVDLKAHVVGQDDAVDKVAKAIRRNRVGLGKQNRPIGSFLFVGPT GVGKTELAKQLAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVR RNPYSLILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSFKDTIIIMTSNAGTGAVEA NVGFGAAREGVTKSVLGQLNNFFTPEFLNRFDGIIEFKALSKENLMNIVSLMLEEVNSLL AKQKLHIEVPTEVKEKLVDLGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAAL DNEGKIIVTGAQEVTKTETSTSDQAE >gi|308151740|gb|GL476282.1| GENE 43 44282 - 44596 452 104 aa, chain + ## HITS:1 COG:no KEGG:EF0705 NR:ns ## KEGG: EF0705 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 170 100.0 1e-41 MKLVNVTNSYKQLVNKQLENTDAYFVKVYSAGNTTAVYSEAAHHVEVLIMNKNRRIRPTE VKEILAKLLKRLPKEAYDPDEISIIELNHVTEVSVPLKVSLMEN >gi|308151740|gb|GL476282.1| GENE 44 44639 - 45670 1135 343 aa, chain - ## HITS:1 COG:no KEGG:EF0704 NR:ns ## KEGG: EF0704 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 343 14 356 356 589 99.0 1e-167 MIILMGCQPDQRTEKMKESTEAEAVQVTSGASAATNATSVKQEEQTNTNDQPKESAAKVS YERNGHTFEVDAVSGATVEANNGQSGISPEEKAQKMYWSGRPEIGEVQGDYYHHEVVFDG GYTALIDVVVKDQQIQLVEFDERGPKNYYSEEWAGVTKRLSGYANFQANNARTDQSLVTV VNTMTFLENQMVAENRLDGAFQTAKGQSNSANNGYLPAARALAKEIKEPSKEHYTSLTED FGEGLSGRLTVITLKDSGKITDLRYDEYFADTEEEIKDAKLKAYSRQSKYFSKDYAQKSG ENFKKEVDDLRKKAIEENKLVSPTNEEAWSENYQSLVKKITSQ >gi|308151740|gb|GL476282.1| GENE 45 45776 - 46423 783 215 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 209 1 209 211 319 80.0 2e-87 MQFYSPIIIKFALGIICLIVQINLMGKGNLAPTSAMDQVQNYVLGGIIGGVIYNDSITVL QFVLVLILWTLLVLILKFAKEHNRYVKQIVDGKPITLIKDGQVVVKECLKNGISANDLMF KLRANGIYEVQLVKRAVLEQNGQLTIVEYGDESIRYPIIVDGQANMDVLELIKKDEHWLL TQIQEQGFQRLQEIYLGEYLSGQLSLSPYEEKTIS >gi|308151740|gb|GL476282.1| GENE 46 46439 - 46882 463 147 aa, chain - ## HITS:1 COG:no KEGG:EF0702 NR:ns ## KEGG: EF0702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 232 100.0 4e-60 MNFYGIEYLKSQSNLNDYLKYFFIFALLIGLVIVFSFYVRHQIQTKYRELSIIIFLSLLF VLGVQYSNYQLNQNQHSQSSQMVHFVEQVAQEKKVSPEKVYVNGTQLADGTIVKIDEVFY KMSLSTDQQSYTLQETYLLTPTIEIIK >gi|308151740|gb|GL476282.1| GENE 47 47366 - 47860 382 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546538|ref|ZP_04435263.1| ## NR: gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02012 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02504 [Enterococcus faecalis TX0312] # 1 164 1 164 164 285 100.0 7e-76 MASSKKDFVYSQNDYLNNYIQFADTKSAVFITVNGVLMGFLYTQIKDNMPFEFEKSKNLF LLASIGLLLVAYVFLFLVIFPRRSYRNGNGIVFWEDVTTYKDAESYKMKVSEIPQGSFEE VMIEQNYYLAKTATKKYKNLHWSFIFSIASYISVVVFSILNVLK >gi|308151740|gb|GL476282.1| GENE 48 47868 - 49136 567 422 aa, chain - ## HITS:1 COG:no KEGG:PSM_A2062 NR:ns ## KEGG: PSM_A2062 # Name: not_defined # Def: adenylate/guanylate cyclase # Organism: Pseudoalteromonas_SM9913 # Pathway: not_defined # 5 408 8 456 462 162 29.0 2e-38 MYNNYNNIERIFYKNLRKENLDNKLEKSVIHSRYMDSSQSIIVPENETLTIAKFPPNRFS EKIGTHPDFIDESLLPKTQYICSIFLDIKGSTRLALKYDLETVQKIKNAVLSTGIEIIRY FGGHIHRLQGDAIFAFTGHSKLLKSDAIIQAINAASVIQYMNQNILKKYFENVLGVSSLK IRIGIDFGDDDEVLWSKYGIDNINEVTVTSLHADLSSKLQNKASENSIMVGENVFSYLQL PDDLLSDIYIKGSSEEKDYYIMKHNSFNYKMKNFDWSKYLERIAHFESYEGDFQIKCYYL SENERRIPYYSEKALEKDTDIVYQIEASQSLLHKINSVEWTVSNSGIEASKEEELDYVVP KEAFTDEDNAVFRCKRHTAFNGLHYMICKIKAEGNITKNKYFSLYVNDNDLSKSYLKKAE LE >gi|308151740|gb|GL476282.1| GENE 49 49298 - 49492 115 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546536|ref|ZP_04435261.1| ## NR: gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9496_02014 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02506 [Enterococcus faecalis TX0312] # 1 64 1 64 64 105 100.0 1e-21 MKESKIKTCKYPNCNKEVPSDKSLFCMEHSRSLKEKRNLVGTALGSVAILGVTTLANSII KKKI >gi|308151740|gb|GL476282.1| GENE 50 49473 - 50477 715 334 aa, chain - ## HITS:1 COG:no KEGG:LKI_07470 NR:ns ## KEGG: LKI_07470 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 1 328 1 327 334 321 52.0 2e-86 MKDFEIGLPKDASLLVNVTDKNLYNYDFTSYSLLPLQRIASKSIAVKIKNSLFSNISEMS LIENLSNQKETEYVARIPDFAKEKIDSGEWSFGVRKKTGETYAVIKDNLSGENKSFVTLD KKIVKELGVLPELSAIQGQLASISEQIEGLNQIIQRVEKGQYNDRYAGFFSSRQLVVEGL ASENESNKRELLISSIKIANETISKLMLSIHEDAALLIDSKTKSKDARRIDNLLQTSLGY LNSAVQLNLIAYTALGEKQSLFATLTNYHSFVKQVLMKENESGRTIAWLLDNAHVGDDGR IQELTNDLSTKIEVLIATYNNERTDVTENERIEN >gi|308151740|gb|GL476282.1| GENE 51 50524 - 52272 708 582 aa, chain - ## HITS:1 COG:Cj0008 KEGG:ns NR:ns ## COG: Cj0008 COG1479 # Protein_GI_number: 15791407 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 4 581 3 580 583 304 35.0 3e-82 MERGFQPLITIKEAIENIDKNIYLLPAIQRKFVWSPEQIESLFDSIMRKYPINSLMLWQI TSDEIKNNYRFYSFLRKYKQRFGEMNEYYNSMGRTDNFFAVIDGQQRLNSLYIGLKGSYA VKLNHKRWVDNEDNFPPMKLYLNIKNTYKQETKIDKEYEFKFLRRDKVEKENKLGEKYWF EVGSILGLSDEKNRCSYLEKVGLENNEYSKDILNLLYETINEEKVLNYYLEDEQNLDKVL DIFIRTNDGGTKLTFSDLLMSFLTVHWSDARENFEELIREVNQFGDFSITIDFILKNMLV LYADDIKSRVKNFNEDVINKIKTNWERIRKSILNAFEMFYRLGFENRTFPAKNAAIPIVY YIYENKLEDEVIKNRFLDSNTQNANSQLMKKWLLLVFLKRIFGGQSDSILREIRKIIDDS SSGVFPLKEIINSAKSNPTKNYSFDDAIIEGLFEVQCGSDDAFFVLSLFYPDLDYFNQNF DIDHIHPKSKFQNKTFMENHFSKEEIERIGNNWNKIGNLQLLNKEKNILKKDKSLSEWME INHLNNSFLFIDEDIKLDIENFELFYENRVAKMKQDLKELVK >gi|308151740|gb|GL476282.1| GENE 52 53191 - 53487 305 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546533|ref|ZP_04435258.1| ## NR: gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02017 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02509 [Enterococcus faecalis TX0312] # 1 98 1 98 98 168 100.0 1e-40 MNTHKMQFGWIIEAPKYLSILTNQDGLVAIVSEYTTFGDNQSLLITLSETSAKVAVTPHY ISSLTISTDKKIKISTSPFYEQQIVEIEKMNSDGQIID >gi|308151740|gb|GL476282.1| GENE 53 54161 - 54415 122 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546532|ref|ZP_04435257.1| ## NR: gi|229546532|ref|ZP_04435257.1| hypothetical protein HMPREF0349_1750 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9521_02925 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03204 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1750 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_03204 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02925 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02018 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02510 [Enterococcus faecalis TX0312] # 1 84 149 232 232 162 100.0 5e-39 MVTGTTNFLFFEKVFKKLAIKEVRLKMGELKSNDSNRIICAATSDYLPILESYGECFTPI AQTKMNENYLKSAEYKSRSKIYNH >gi|308151740|gb|GL476282.1| GENE 54 54524 - 55372 475 282 aa, chain - ## HITS:1 COG:L34517 KEGG:ns NR:ns ## COG: L34517 COG0582 # Protein_GI_number: 15672627 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 264 2 275 312 94 25.0 3e-19 MNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKQIKSWIIDM QEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML TVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAV SPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRF SGHTLRHTYASMQLRNGLDIYTLSSEDFIERSIKTSTLMNLR >gi|308151740|gb|GL476282.1| GENE 55 55507 - 57081 1814 524 aa, chain - ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 3 524 1 514 514 794 76.0 0 MTINQKEAVDSRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWME IEKQRGISVTSSVMQFDYQDKRINNLDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEA QTKKLFQVVKKRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEG LYDIYNERVELYRPENNGGERFIPLKDGDIPSDLPLHNNSVYQQVLEDVELLVEAGDEFS EEKIARGDQTPVFFGSALTNFGVQTFLETFLQFAPAPHAHKTEEGGEVSPYEKEFSGFVF KIQANMNPAHRDRIAFVRICSGVFERGMDVTLGRTGKKVKLSNVTQFMADARENVTEAVA GDIIGVYDTGNYQIGDTLYEGKMNVQYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLV QEGAIQLYKTYLTEEYIIGAVGQLQFEVFQYRMSNEYNAEVVMTPMGSKIARWINPEDLD ERMSSSRNILARDRFDQPLFLFENQFAERWFADKYPDVELKSLM >gi|308151740|gb|GL476282.1| GENE 56 57255 - 58634 1684 459 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 443 1 442 449 465 57.0 1e-131 MNNADPESQSLIAQLLLLVVLTFINAFLAAAEIAVVSVNKNRVEQKAEDGDAKAQKLLKV LQDPNNFLSTIQVGITLVNILSGASLAETLSSRLAPVLGGGAAAKSLASIIILALLTYVS IVFGELYPKRIAMNKSEEVAQLTSGAVRFLGVIARPFVWLLSASTDLLSKITPMTFDDAD SKMTRDEMRYMLETEGVLENEELEMLQGVFSLDTKVAREVMVPRTDAFMVDIQDDVQENI NLILGENYSRIPVYSEDKDKIVGILHTKTLLKAARNLGFENIELGAIIQEPLFVPETIFI DDLLYELKRTQNQMAILLDEYGGVVGLATLEDLLEEIVGEIDDETDEVENLYTQVADNEY LVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME GTRLLVLRVHFYDEETVDEEPEENRRFFRKEMEDDEPRR >gi|308151740|gb|GL476282.1| GENE 57 58809 - 59954 1422 381 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 3 362 4 363 378 306 47.0 4e-83 MINRFKESKLFFWSVELLVVAMLLFIASKINFLFAPIGTFFSTLFAPVLVAGFLYYLLNP VVNLLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKLADQLASLASSMPDFFKQVETWI YEIAELPIFKQIDLTSYIEKMDISYANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFI LFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGY SLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDG NIIYPNVIGKSLKIHPLTIILILLVAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGR SEKVTNAVLLGNETNTKENNG >gi|308151740|gb|GL476282.1| GENE 58 60099 - 60530 546 143 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 123 46.0 1e-28 MHVAQTKDTMSDLYLDAVRLRQRVFVAEQGVPEEMEIDEYEAHCIHFVLYTDHVAVATCR LLPLENGVMKLQRMAVEKAYRGADYGRMIMEAAENFAKEQGYHKITLGAQVTAVGFYERL GYQKTGAPFMDAGIEHYEMNKEL >gi|308151740|gb|GL476282.1| GENE 59 60618 - 61151 422 177 aa, chain - ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 1 176 1 176 176 289 82.0 2e-78 MGIPKEGEFVTIQSYKHDGHLHRTWRDTMVLKTSEYSLIGVNDHTLVTESDGRRWVTREP AIVYFHKKYWFNIIAMIREKGVSYYCNLASPYVLDDEALKYIDYDLDIKVFPDGEKRLLD VDEYEFHSKLMDYPEDIDFILKENVKTLVDWINNEKGPFSPEYVDIWYQRYQQLSKK >gi|308151740|gb|GL476282.1| GENE 60 61340 - 62317 1094 325 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 5 319 4 321 326 373 61.0 1e-103 MKKISEQKRKHLENLVDDQGIIGALAIDQRGALKRMMGKYKEVTAQEISDFKVLVSRCLT PETSAILLDPEYGLAAAENRAQTSGLLLAYEKTGYDASTPGRLPDSLDVWSVKRLKEAGA DACKFLLYYDVDESEAINERKKAYIERIGSECLAEEIPFFLEIVSYDANNSDSASKEYAK VKPHKVIEAMKEFSKDRYNVDVLKVEVPVNMNFVEGFGTESLYSQDEAQAFFNMQSEATQ LPFIFLSAGVSATMFQETLKFAKKAGSSFNGVLCGRATWADGVLPFVQQGSEAAVAWLET TGKTNVDELNQVLRESAVSVFEKIQ >gi|308151740|gb|GL476282.1| GENE 61 62314 - 62775 606 153 aa, chain - ## HITS:1 COG:hrsA_1 KEGG:ns NR:ns ## COG: hrsA_1 COG1762 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 11 149 34 173 183 84 29.0 1e-16 MAFIKENHIFLNQQLQTQEDVFHFLAKKSTELEVAQDAQEVFDKLNEREQEGTTGMMNGF AIPHAKAATIQQAAIIIVTLDQGVEWQSLDNQLTEFVIALFIPDAEAGTTHLKLLSSVAR LLLREEVTSGLKQASSPAEIATLLNNQLGEGTE >gi|308151740|gb|GL476282.1| GENE 62 62802 - 64220 1825 472 aa, chain - ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 132 456 1 324 350 396 64.0 1e-110 MATYQLIAATGCPTGIAHTYMAQEALEQAAKRKGITIKVETHGQIGIENELTPAEIQGAE AVIIAADKDVQAERFAGKRIIDVPVSVGIKEADRLIEEALAGKGSIAAENQAVDELEQET QISSGNVGHSIYKNLMNGVSHMLPFVVAGGILIALSFAIWGIYSFDPESSQYNATAAMLK SIGDASMGMMVPILSAYIAEGIAKRPGLVVGFVGGLIANTGGTGFLGGILSGFLAGYFIL LLQRVFKGLPKSLDGLKAIFLYPVIGVAVIGITMSLLADPMKAVNEGMMSFLASFQNSSP LVLGIIVGCMCAFDMGGPVNKAAYVTGTALLAQGNTSFMAGVSAACIAPPLITGFATLFF GKYFDTNERNAGLVNFILGSTHITEGAIPFAAKDPLKVLPIMMLGSSIAAVLTYMFGVQV PAPHGGFLVLPVVTHAVQWVLAILAGSLVGGLLLGFVQKSRIAKQEQSLSKK >gi|308151740|gb|GL476282.1| GENE 63 64225 - 65151 1064 308 aa, chain - ## HITS:1 COG:BH0827 KEGG:ns NR:ns ## COG: BH0827 COG1105 # Protein_GI_number: 15613390 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus halodurans # 3 303 2 299 306 216 40.0 5e-56 MTIYTCTLNLAIDLFIETEELVPFVVNRTKEDDIQANGKGVNVSLILKMLGIDNTALGVK AGFTGNYVEDYLKEKEITTDFIEVAGTTRINVFTKVTQDQKEYKLVNKGPKLSEEHVQRF LKKISELRKGDYLCVSGSLPQGVSPSILIEISRICFEKQVFLILDSSYEEILDCLPYQPF LLKPNEEELQEWFHTEVQTKDDYIFYGQELLKRGAKNILLSLGSEGALFMNNEKVLSGNS PTGMVVNTACSGDAMLGTFLAGWHQGLSLEKNLKRSIAAGSSTAFRKGLTDFSDVQELEQ QIKIQEEE >gi|308151740|gb|GL476282.1| GENE 64 65329 - 66075 558 248 aa, chain + ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 246 4 241 244 139 36.0 4e-33 MEQKLSESEQYLWHFIETHILEIPDYSIVKLSERANVSTATIVRTMKKKGYEGFTSFKHH LKDKENQNINFSALEKVDRGIRTAILKNEEEVTRTINMIEIGNIEDAIQKIKASRRIIIF ARGFSELIAQEMMVKFQLAGKYCELHTDPEIIKNISKKLSKKDVALFVSLNGETQELVVA GKNCYDSEIGTILLTASKHSSLMKYIEIPFVGFKSEGSFFPDYEVRSRLPLSILARILLD AYALRTTT >gi|308151740|gb|GL476282.1| GENE 65 66135 - 66779 964 214 aa, chain - ## HITS:1 COG:SPy1726 KEGG:ns NR:ns ## COG: SPy1726 COG0220 # Protein_GI_number: 15675576 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 211 211 296 66.0 2e-80 MRVRNRPGAAEYMAKYPQYVVEGPEKWQGKWQERFGNNHPIHIEIGSGKGRFIYEMAKAH PEINYIGIDMQLSILSIALDKLVAEPLPNLQLLRVDGEALTEYFAENEVDLIYLNFSDPW PKKKHEKRRLTYKNFLATDEIILKPNGEIHFKTDNQGLFEYSLSSFSKYGMIIERVWLDL HNSEFEGNIMTEYEEKFSSRGQRIYRVEARFVAK >gi|308151740|gb|GL476282.1| GENE 66 66852 - 67631 778 259 aa, chain - ## HITS:1 COG:L155396 KEGG:ns NR:ns ## COG: L155396 COG0510 # Protein_GI_number: 15672730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Lactococcus lactis # 5 255 2 252 257 201 37.0 2e-51 MEFQLDKDWRLQPIKGATGQTYMGIKETEKVFIKRNTSPLLAALSKEGLAPKMIWTKRTA NGDVLTAQEWLEGRLLHADEIGKRNDVIDVLYQLHHSNLLKDMLKKIGGEVCTPLTMLKE YKRQLPKELKRNSYLKEVITYLYNHLPEYPETSYVAVHGDVNHRNWLVSNNYLYLVDWDS VMVADPAVDLGMILSHYVPRSGWNQWLLSYGLIPNESTVQRIYWYGLFSFLQEIVRHHQE GERRAMTAEILQLKRMFSS >gi|308151740|gb|GL476282.1| GENE 67 67760 - 68971 1030 403 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 403 10 405 407 188 33.0 1e-47 MGEFFSQRLSRHFKKMSKYLRYILNDHFVLVCMFLLGGLGLYYSQLLKELPRDFVWGRPL ILLGWLLLIQVGKLATLTEEPDKFFLLPKEKQFAAYLKRALRYSLLLPIVVSFLGSGLLM PLIVVTTGWSFQTFFLFLVMLVCMIYTHLSLQSYGLYHLSSTTYRSWWFVWLISSLLIMT GAIYWTPWVGVIGGIILAVCLSSIWQNKMKKSFLDWEKMIQKEQNRMHRIYKFIQLFTDI PEVSSTVKRRKYLDPLLGVVKKTSENTYAYLFIRSFLRGSEYSGLLFRLILVGGVLLFFL QEFWIALVVALLFVYLIGFQLIPMYTQFDYMVMTQLYPISIEKKQAAIRRLISGALSVAA IIFGGIVCLRLGSLQNSLIILGALIVEVVIFTKMYVPMRLNKL >gi|308151740|gb|GL476282.1| GENE 68 68973 - 69710 262 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 2 232 8 239 309 105 30 7e-22 MSLTIEHLTGGYGHIPVLKDINFDVKSGEMVGLIGLNGAGKSTTIKNIIGLLTPQKGKIM IDGETLQQAPEEYRKKIGYIPETPSLYEELTLKEHIEVTALAYDIPLEEAFKRAEPLLKT FRLDNKLEWFPANFSKGMKQKVMVLCAFLIEPSLYIIDEPFLGLDPLAIHALLELMDTMR KQGAAILMSTHILATAEKYCDRFVVLHEGKLRANGTMAELRAEFNLPESSLDDIYLALTK EEKVG >gi|308151740|gb|GL476282.1| GENE 69 69924 - 70349 523 141 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 181 60.0 3e-46 MNDCIFCKIINGEIPSYKVYEDEKVYAFLDITQVTKGHTLMIPKQHVADIFEYNDVLASD VFARIPKVARALEKAFPEMEGLNILNNNKEVAYQSVFHSHVHLIPRYSKEDDFSIHFGNH QEDYSAEAMQEIAETIAKQVN >gi|308151740|gb|GL476282.1| GENE 70 70350 - 70694 327 114 aa, chain + ## HITS:1 COG:no KEGG:EF0686 NR:ns ## KEGG: EF0686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 200 100.0 2e-50 MKKFIKGLFFGAAAGTIGGLLAAPRSGKETRQHLINELEDYRSLKNQVTNDWDQVQRNLA VVEENVPLATEFSKDLQQEITDFKFQAEPRIAQIKEQIAKITAELPDTQTNKQK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:32 2011 Seq name: gi|308151739|gb|GL476283.1| Enterococcus faecalis TX4000 genomic scaffold Scfld86, whole genome shotgun sequence Length of sequence - 14490 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 8, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 193 - 238 17.1 1 1 Tu 1 . - CDS 297 - 2942 3179 ## COG0474 Cation transport ATPase - Prom 3180 - 3239 10.4 + Prom 3724 - 3783 7.9 2 2 Tu 1 . + CDS 3822 - 4070 277 ## COG1476 Predicted transcriptional regulators + Term 4142 - 4188 10.5 - Term 4264 - 4305 1.2 3 3 Tu 1 . - CDS 4439 - 5470 1351 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - Prom 5596 - 5655 7.4 + Prom 5539 - 5598 8.6 4 4 Tu 1 . + CDS 5636 - 6526 1018 ## COG0346 Lactoylglutathione lyase and related lyases + Term 6551 - 6601 4.4 5 5 Op 1 24/0.000 + CDS 7161 - 8345 1389 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 6 5 Op 2 13/0.000 + CDS 8349 - 8984 964 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 7 5 Op 3 13/0.000 + CDS 8987 - 9907 1314 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 8 5 Op 4 . + CDS 9911 - 10573 990 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 10585 - 10636 6.6 9 6 Tu 1 . + CDS 10645 - 11109 323 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 11103 - 11136 1.5 10 7 Tu 1 . - CDS 11144 - 12967 1666 ## COG0531 Amino acid transporters - Prom 13078 - 13137 7.2 - Term 13187 - 13238 7.1 11 8 Tu 1 . - CDS 13265 - 14434 1388 ## COG0053 Predicted Co/Zn/Cd cation transporters Predicted protein(s) >gi|308151739|gb|GL476283.1| GENE 1 297 - 2942 3179 881 aa, chain - ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 5 869 5 868 876 878 54.0 0 MEAYKQSVDTVTKEVSVNTETGLTQQEAQQRLKENGRNQFEEAKKDSVLKKFIHSLSDFT TIILLVAAAISFYTAIVTEHGEYFEGILIIAIVIINAVLAIVQEGNAEKSLAALQDMNKQ SSAVLRDGKVIEVDAEELVVGDVLVLEAGSMITADARLIQASQMRVEESALTGESEPVEK DPTYVGHDDDGLGDQINMIFKGCTVVNGRGRAVVTATGMNTEMGKIAGLLNNSDQQKTPL QKRLNQLGKRISLLALGAAAIVFIIGELQGEPLLEMFMTAVSLAVAAVPETLTVIVTLTL AYGVQKMAKKHAIIRRLPAVETLGTANVICSDKTGTLTQNKMRVRRVWHRGDEVTDTEDA MTDEAMEVLKMAALCTDVIVEKEGDELTVTGNPTEAAIVRAVEENYHTKEELEEKYPRIG EIPFDSERKMMTTVHQWGKKYISITKGAFDVLLPRFGFGDVDQAAIVNDRFGKRALRVIA VGYAVYDEPPKEITSEALEKNLRLLGLIGMIDPPRPESKGAIARAKKAGIKTVMITGDHV VTASAIAKELGILKDKSEALSGSELKKMSDEELDKRVKDLSVYARVTPEDKIRIVQSWQR SGAVVAMTGDGVNDAPALKASDVGCAMGITGTDVAQGASDMILTDDNFATIVDAVAQGRA VYRNIRKAINFLLSCNISEIFIVLIAMLLGWGAPFTAVQLLFVNVVADGLPGFALGKEPA EKGIMDEAPIPKNEGIFARGLWQKIGINAAVFTVITLFGFYLGAFVPGVSAYVSNSYEVG QTVAFLILAYSSILHVFNVRSANSVFRVKLSSNKSLFEMVVLALLITTTIALLPFTQELF GLVHISLNHWMLAIFLSFVPIFVNEMIKFHFSEVEEEEEVI >gi|308151739|gb|GL476283.1| GENE 2 3822 - 4070 277 82 aa, chain + ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 8 72 13 77 79 68 49.0 4e-12 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF GVTIDDVFTFKETLNDDVEQEA >gi|308151739|gb|GL476283.1| GENE 3 4439 - 5470 1351 343 aa, chain - ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 2 342 1 341 342 550 77.0 1e-156 MLSTEDFDFDLPEELIAQTPLKDRASSRLLVVNKETGDMEDKHFHDILDELQPGDALVMN NTRVLPARLYGEKPETGGHLEVLLLTNTEGDTWETLIKPAKRAKVGTEIQFGDGRLKAVV KEELEHGGRIIEFKYDGIFLEILESLGEMPLPPYIKERLDDPDRYQTVYAEENGSAAAPT AGLHFTKELLEEIKAKGVHLVYLTLHVGLGTFRPVSVDNIEEHHMHSEFYRLTEEAAKQL NEVRQAGGRIVAVGTTSIRTLETIGTKFNGEIQADSGWTDIFITPGYQFKVVEAFSTNFH LPKSTLVMLVSAFAGKDLTLAAYQHAIEEKYRFFSFGDAMFIK >gi|308151739|gb|GL476283.1| GENE 4 5636 - 6526 1018 296 aa, chain + ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 296 6 295 296 277 48.0 1e-74 MHAQFHHVSLLARHGQENQAFYTKLLGLRFVKNTVNQDNNRMPHYFYGDYQGTPGSLVTF FIVPLLGNRYEEKNYLATIGLKIPQNSLSFWEQRLTENKIPFNKKEKSLHFSDPDDTHII LTEVPENPLKETLVVSNDIPAAVQIIGLASTEFHVPDSEKTLAFFETFLGWQAVGNTIIL SETESFSVHQTTSDKTSRMGRGSMDHIAFSVADDEALQELHTRALAQGWEIEMYVSRGYF KSLYIREPGGNRVEFATLAPGFTLDEPLEHLGETLALPPFLEPKRTAIEANLYKDM >gi|308151739|gb|GL476283.1| GENE 5 7161 - 8345 1389 394 aa, chain + ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 393 1 392 397 488 65.0 1e-138 MIEFQHVSKFYKGGKVAVDDINLSFDKGEFICFIGTSGSGKTTSMRMLNRMTDPSKGKIL IDGQDIQKINPVELRRQIGYVIQNIGLMPHMTIRENIVLVPKLLKVPVEERNKIAEKMID LVELPREMLDRYPNELSGGQQQRIGVVRALAANQDIILMDEPFGALDPITRDSLQDLVKD LQERLGKTIVFVTHDMDEALKLANKIAIMSEGKVIQFDTPDNILRHPANEFVEELIGEDR LLQAKPDFTTVDEVMLNSAITITPEKSLQEAIKLMREKRVDTLLVVDNSHVLKGFIDVET LDQQRGKASSVGDILNKDVFFVQKTALLRDALQRILKRGLKYVPVVDEQKRVVGILTRAS LVDIVYDVIWGDETTISEAVEAKQSESETDKEEA >gi|308151739|gb|GL476283.1| GENE 6 8349 - 8984 964 211 aa, chain + ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 3 211 6 214 218 244 65.0 8e-65 MSSFFQEYGSEMFSKSIEHIYISFFALLLGVAIAVPVGVWLTRLPKVANIVIGLTSALQT VPSLALLALMIPIFGVGKTPAIIALFIYSLLPILRNTYIGMKNVDENYRDVAKGMGMTNL QSIFSVELPIAMPTIMAGIRLAAVYVIAWATLASYIGAGGLGDMIFSGLNNYQPELIFGG TIPVTILALLADVLLGLLENRLTPKALREGE >gi|308151739|gb|GL476283.1| GENE 7 8987 - 9907 1314 306 aa, chain + ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 304 1 303 303 342 55.0 5e-94 MKKKLKLSLLFLSSLLLLAGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYT DKKTNVINNLATTTINHQAMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEF EKRYQQTWFPSYGFENTYVFLVTKETAEKYNLKTVSDLGKIADKLVAGVDTAWITREGDG YEGFKKEYNFQFKSILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKDDKRFFP PYDAAPVVSDKLLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN NYFEGE >gi|308151739|gb|GL476283.1| GENE 8 9911 - 10573 990 220 aa, chain + ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 217 1 214 229 251 65.0 6e-67 MNNMNLFQQFIYYFQQNGGYVFQQFLRHFLISIYGVIFAAIVGIPIGIMISRKRSLANWI IRLANIIQTVPALAMLSILMLGMGLGVNTVVVTVFLYSLLPIIKNTYTGMIQVDRNILDV GKGMGMTKVQLLYMVELPLSVSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIIRGTNA TDGASIILVGALPTAFMAIITDWVLGIIERRLDPASKHSN >gi|308151739|gb|GL476283.1| GENE 9 10645 - 11109 323 154 aa, chain + ## HITS:1 COG:L69304 KEGG:ns NR:ns ## COG: L69304 COG0454 # Protein_GI_number: 15673990 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 6 149 4 148 152 102 37.0 4e-22 MSNYTIIDLNQQPHLIPSAAQWFSQKWQIPAEAYQASMQEMLTSENHVPHWWVCLNKQQD IVAGVGVIDNDFHNRADLTPNLCALYVEPTFRHQGLAGILLTTVGDFLANSGLKKLYLLT DHTTFYEKYDWEFLTMVTTEEQSCARIYQKQLRQ >gi|308151739|gb|GL476283.1| GENE 10 11144 - 12967 1666 607 aa, chain - ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 607 5 607 607 700 59.0 0 MADLKRLFIGKPLKSAENDEHKLSRFAALALLSSDALSSIAYGTEQIVVVLVTLSAAAIW YSLPIAAFVIILLISLTLSYRQIIHAYPHGGGAYVVSSENLGRNAGLLAGGSLLVDYMLT VAVSVSAGAEAIISAIPALYGHQVAISIGIVILITLMNLRGLRESASFLMLPVYSFIAII TLLIVVGLFKIVTGAQPLNATALPGAVVPGISIALVLRAFSSGSSSLTGVEAISNAVPFF KKPRAKNAAGTLALMATILGFFFVGITFINYWYGIVPKEEVTVLSQIGKAVFGQNILYYL LQFATALILAVAANTGFSAFPVLAYNLAKDKFMPHMYMDRGDRLGYSNGILTLAAGSIVL LLIFQGSTERLIPLYSIGVFIPFALSQSGMVVKWRKETKNWLPKSIANIVGAFISFAIIA ILFIYRLGDIWPFFIIMPVLIYAFYRVNTHYKNVAEQLRLEDGAQLHEFDGNTVIVLVGN VTKANVGALNYARSIGDYVVAMHVSMDENVEKEKEIQEEFKKHFPDVRLSIVHSSYRSLQ NPILRYVDLVSKNATKHNYSTTVLVPQFVPNKRWQNILHNQTSLRLRIRLAWRENIIVAT YSYHLKK >gi|308151739|gb|GL476283.1| GENE 11 13265 - 14434 1388 389 aa, chain - ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 21 386 32 400 403 276 38.0 7e-74 MIQALLQRYEKKIERRKLEKRTAFGAFAGRIGLVSNLFLFVSKFMIGLLSGSVSIMADAI NSLSDTISSVLTLVGFYIAGKPADKEHPYGHERFEYISGMLVSLVITFIGFEFLTTSVDR ILHPESIKVTPVLFAVLALSIGIKIWQGLFYKKVSAKIDSQALVASAKDSFNDVYTTLAV LVSAFIEGVTGLRIDGYIGFLIAAYIIYSGLQLIREFINELMGMRPSQTEIDEMKNVLSK METIVGYHDLLIHNYGPSQTFASVHIEIDDRWDLNKAHQTIDAIEAKFKEELDVNLVCHI DPVNLYDPTQQFVHQTIKKIIRSFDASLKVHDIRLVTHGEEPKILFDLVLPTESKLSEFE LGVEIQRQVYEKIGRYKVEITFDHTYLLQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:34 2011 Seq name: gi|308151738|gb|GL476284.1| Enterococcus faecalis TX4000 genomic scaffold Scfld88, whole genome shotgun sequence Length of sequence - 1775 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 385 - 1635 766 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|308151738|gb|GL476284.1| GENE 1 385 - 1635 766 416 aa, chain + ## HITS:1 COG:FN1357 KEGG:ns NR:ns ## COG: FN1357 COG3547 # Protein_GI_number: 19704692 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 407 2 385 391 103 26.0 6e-22 MKLFVGLDVSSEKLDACFMTDDSTCSVLKEASYGNSQLGASQIKEYILEFSQKFEIESLV IGMEATSLYSFHPAMFFKEDLELNQLNLMVSVEQPNKIKKYRDIFEENKNDQIDAFYIAD YFRIQRQVNSIIKEEEYLALQHLTRTRYQLIKQLVRTKQHFIENIYYKCNTLSKELKAEG GSVLSATLVTLMTEDYTMDQLAELSLEEFANLIQKLGKYRFKNPEGIAKAISKAIRSSYR LGKVHQDSVDIVLGVLAKEIRSLEKLIKDLDKAIDDLVVVLPEYQCLTSIPGIGPVYAAG ILAEIGPINRFSDESKLAKYAGLYWRQNQSGNSEYENTPMAKRGNRYLRYYLVEATNSVR RYEPEYHAYYKKKYAETPKHKHKRAIVLTARKFTRLVDTLLRNHQLYMPPRSVIDK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:39 2011 Seq name: gi|308151737|gb|GL476285.1| Enterococcus faecalis TX4000 genomic scaffold Scfld91, whole genome shotgun sequence Length of sequence - 14004 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 9, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 597 - 656 8.3 1 1 Tu 1 . + CDS 769 - 1179 278 ## EF1872 hypothetical protein + Prom 1356 - 1415 2.8 2 2 Op 1 . + CDS 1473 - 1820 166 ## EF1871 thioredoxin family protein 3 2 Op 2 . + CDS 1813 - 1980 147 ## gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 + Prom 2010 - 2069 4.1 4 3 Op 1 36/0.000 + CDS 2115 - 3284 513 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 5 3 Op 2 36/0.000 + CDS 3291 - 3950 250 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 6 3 Op 3 . + CDS 3950 - 5326 823 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 5420 - 5469 6.1 - Term 5415 - 5450 3.5 7 4 Op 1 2/0.000 - CDS 5457 - 5903 228 ## COG3464 Transposase and inactivated derivatives - Prom 6052 - 6111 2.6 8 4 Op 2 . - CDS 6113 - 6367 196 ## COG3464 Transposase and inactivated derivatives 9 5 Tu 1 . - CDS 6499 - 6609 151 ## gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 - Prom 6838 - 6897 7.8 + Prom 6797 - 6856 4.3 10 6 Op 1 40/0.000 + CDS 6881 - 7534 452 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 7550 - 7609 11.1 11 6 Op 2 . + CDS 7672 - 8850 616 ## COG0642 Signal transduction histidine kinase 12 7 Op 1 . - CDS 9175 - 10128 684 ## COG3328 Transposase and inactivated derivatives - Term 10152 - 10176 -1.0 13 7 Op 2 . - CDS 10198 - 10344 280 ## EF1874 IS256 family transposase - Prom 10444 - 10503 10.2 + Prom 10478 - 10537 9.0 14 8 Op 1 1/0.333 + CDS 10598 - 11443 610 ## COG5495 Uncharacterized conserved protein 15 8 Op 2 19/0.000 + CDS 11455 - 12282 629 ## COG0413 Ketopantoate hydroxymethyltransferase 16 8 Op 3 12/0.000 + CDS 12297 - 13145 412 ## COG0414 Panthothenate synthetase 17 8 Op 4 . + CDS 13158 - 13553 287 ## COG0853 Aspartate 1-decarboxylase + Term 13704 - 13733 0.2 18 9 Op 1 11/0.000 - CDS 13706 - 13819 67 ## COG2801 Transposase and inactivated derivatives 19 9 Op 2 . - CDS 13823 - 14002 96 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|308151737|gb|GL476285.1| GENE 1 769 - 1179 278 136 aa, chain + ## HITS:1 COG:no KEGG:EF1872 NR:ns ## KEGG: EF1872 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MGVKKVKIKEGQSISSEEEGMSINANGKNETFKPSDYTLEAKKEYVYEYLGLKFKLSDKF RNYIADKKIAMLDDQSPIDKELKYAILTFEKMTEEQKNAVIEKMGDGYKNWQNELERIGT IGIFEKNTSEEKNLKL >gi|308151737|gb|GL476285.1| GENE 2 1473 - 1820 166 115 aa, chain + ## HITS:1 COG:no KEGG:EF1871 NR:ns ## KEGG: EF1871 # Name: not_defined # Def: thioredoxin family protein # Organism: E.faecalis # Pathway: not_defined # 1 115 47 161 161 224 100.0 7e-58 MVNVFATWCTACVKEIPDLVEVQNEMKSKGVNIVGVVTDPVDDNGENKEAIEKSKLIHEK TKASYPFLMPDKTNFNGRLNGIQAMPETFFVDSNGETKVVLDKAIRICMECIGIG >gi|308151737|gb|GL476285.1| GENE 3 1813 - 1980 147 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545543|ref|ZP_04434268.1| ## NR: gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02053 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_00904 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01482 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_01949 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01905 [Enterococcus faecalis TX0630] # 1 55 3 57 57 85 98.0 1e-15 MDRIKNIINGSTKKDKYKIRDRFKHLFQLRIAIIWSVSDVDDVKMLVQWMQLVME >gi|308151737|gb|GL476285.1| GENE 4 2115 - 3284 513 389 aa, chain + ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 387 387 247 37.0 3e-65 MKSSNEIEKALYESSNSSISITKKDGKYFNVNQFKDIEKLKEIEEKIIQYDGLAKLKDAK VVSGEQRINREDLSDEFKNVVSLEATNNTKRNILFSSGVFTIKEGKNIEENDKNSIIVHE EFAKQNNLKLGDEVDLELLDIEKSGKIKSHKFKIIGIFSGKKQETYTGLSSDFSENMVFV DYSTSQEILNNSENNEIANKILMYSGSAESTDLALNKLKELKIDESKYFVEKDSNAFEES LESVSGIKYIIKVMTYSIMLVGMVVLSLILILWLRERIYEIGIFLSIGTSKIQIIMQFIF ELIFISIPSIISSLFLGNVLLKVIVDGFINSEDSMISGGSLINNSSFMSNITTLGQSYLI LISIIVLSVVFASSLMLIKKPKEILSKIS >gi|308151737|gb|GL476285.1| GENE 5 3291 - 3950 250 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 100 33 4e-21 IMDILEIKNVAYSYANSKEKVLSGVNQKFELGKFYAIVGKSGTGKSTLLSLLAGLDKPQT GKILFKNEDIQNKGYSNHRKNNISLVFQNYNLIDYLSPIENIRLVNKSADESILFELGLD KKQIKRNVMKLSGGQQQRVAIARALVSDAPIILADEPTGNLDSVTAGEIINILKTLAKDR NKCVIVVTHSKEVADSADIILELSGKKLKKVNKMNLEVE >gi|308151737|gb|GL476285.1| GENE 6 3950 - 5326 823 458 aa, chain + ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 459 505 60.0 1e-143 MIKNAFAYVTRKSLKSLIIILVILSMSTLSLISLSIKDATDRASKETFANITNSFSMEIN RQVNPGTPRGGGNVKGEDIKKISQTDSIDSYVKRINSVADLVDYDIIETQETLANQSPER AKNFKRTVMLTGVNDSTKETKFVSEAYKLVEGKHLENEDKNKILMHKDLAEKNNLKVGDK IKIKSNLFDADNEKGADETVEVEIKGLFDGHNSGGVSAAQELYENTLITDVHTAAKVYGN TEDTAVYQDATFFVKGDKNLDSVIKDLGKLDINWREYNLIKSSSNYPALQQSISGIYSIS NKLFFGSLIFAGVVVSLLLFLWMNARKKEIAVLLSLGISKLEIFGQFLIEMVFISIPAFV GSYFLAQYTADKLGNNILNKVTGDIAKQIAKQSASSQLGGGAEAEGFNKTLSSLDINVLP KFMIYVVIFMSLVLLVSLIISSFNILRRNPKELLIDNN >gi|308151737|gb|GL476285.1| GENE 7 5457 - 5903 228 148 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 139 265 402 418 108 42.0 3e-24 MKRYWKLLQKEEAKLNYEKRVWRASFKDYLTESEIVDRLLSACPNLRQGYQLYQDILYAV KKRDQSLFEDCLNREVSGLPETYTTTLRTFKKFLPQIQNALHYSYSNGPLECLNNHIKVL KRNAYGFRSFYNFKLRIMIRHGKTFLTK >gi|308151737|gb|GL476285.1| GENE 8 6113 - 6367 196 84 aa, chain - ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 83 130 212 317 77 46.0 6e-15 MTEIARQKNISTSSVYRVMKRFYRPLNPFKQTLPKVLCFDEFKSVRHVTSAMSFIMMDGQ SHALLDIVENRRLPYLEHYFLGFH >gi|308151737|gb|GL476285.1| GENE 9 6499 - 6609 151 36 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69243909|ref|ZP_00602487.1| ## NR: gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] # 1 31 1 31 424 62 87.0 8e-09 MDNHTRKLLGLTDKHLFFDEDWLIEKEYMSIALIWS >gi|308151737|gb|GL476285.1| GENE 10 6881 - 7534 452 217 aa, chain + ## HITS:1 COG:SP0603 KEGG:ns NR:ns ## COG: SP0603 COG0745 # Protein_GI_number: 15900511 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 218 263 62.0 3e-70 MKILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSDINLVILDIQIPFINGLE VLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYGH LEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDSE ETPYDRVIDVYIKELRKKLQLDCITTIRNVGYKLERK >gi|308151737|gb|GL476285.1| GENE 11 7672 - 8850 616 392 aa, chain + ## HITS:1 COG:SP0604 KEGG:ns NR:ns ## COG: SP0604 COG0642 # Protein_GI_number: 15900512 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 388 49 434 442 287 41.0 2e-77 MANEISSNMNGKEIKYIEQTLEFYSKSSEIKVFIKEKNNKNEIQIKDNINVNLESDSNSL IIEEREIKLNDGKKTNLQFVSTADMQKDAKDLSLKFLPYSLLISILFSAIISLIYAKSIK NNIQEIKIVTDKMMKLDKKMSLKVSSNDEVGELKQQINDLYSTLLRTIDDLEFKNKEILK LEKLKYDFFKGASHELKTPLASLKIILENMKYNIGKYKERDIYINECIEIVDSLTKNISQ ILSVHSIENLNNDEEYLKINDTLEDILKKYEILANQKKITVNNYILDENVYIGKTALKII LSNLISNAVKYTDVNGVINIGIVNDWLYIENSYGNNKISNMDKIFDVKFDLNKENSNGLG LYIVSNILNNYNIEYKVLQDEEFFIFKIKIFS >gi|308151737|gb|GL476285.1| GENE 12 9175 - 10128 684 317 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 316 73 389 391 322 51.0 5e-88 MNLTIPRDRNGELSQQTLPAYKRTNDSLETTIIQLFQKGITMAEISKLIEKMYGHHYTPQ TISNMSKLVAEDVLAFKERTLEANYSVIFMDATHIPVKRQTVSKEAVYITIGIRLDGTKE VLGFTIAPTESAYIWKEVLQDLRKRGLEEVLLVVTDGLSGIEESIHSVYPNAQFQQCCVH VSRNIAHKVRVRDRKEICEDFKLVYQANSKEEALDHIDFMIRKWKKQYPRVVNLLLNPAL LTFYNFPHAIRRTIYSTNLIEGFNKQLKRYTRRKEQFPNEESLERFFISQFNQYNQKFLG RIHKGFKEIQDTLESMI >gi|308151737|gb|GL476285.1| GENE 13 10198 - 10344 280 48 aa, chain - ## HITS:1 COG:no KEGG:EF1874 NR:ns ## KEGG: EF1874 # Name: not_defined # Def: IS256 family transposase # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 396 70 70.0 2e-11 MTKFTIEIMQTLLNKGDLDELFQDHLERAINSLLQAELTAFLDYEKYD >gi|308151737|gb|GL476285.1| GENE 14 10598 - 11443 610 281 aa, chain + ## HITS:1 COG:RSp0668 KEGG:ns NR:ns ## COG: RSp0668 COG5495 # Protein_GI_number: 17548889 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 262 11 272 294 104 25.0 2e-22 MNVGFIGAGKVGCSFGKYFQEHKIQVTGFYSKSEDSSLAASNFTSSKQYLNLRELVDEND TIFITTPDGQIQEVWQEIKNYQIKNKLICHCSGAISSDIFSNIQDYGAYGYSVHPMFSIS DKYNSYKKLKKSFITIEGDEKYAKFLCDFFKKLGNSTVIVSKENKFLYHAASVVSSNLVL GLINTSVTYLIQCGFTEKMAIEALYPLIEFNIRNIKEKGIIESLTGPVERCDISTIKGHC EVLSDEDRALYMLLSKNVLEIAMLKNINRDYSELEKYLGES >gi|308151737|gb|GL476285.1| GENE 15 11455 - 12282 629 275 aa, chain + ## HITS:1 COG:CAC2914 KEGG:ns NR:ns ## COG: CAC2914 COG0413 # Protein_GI_number: 15896167 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Clostridium acetobutylicum # 1 274 1 274 276 383 68.0 1e-106 MKNTAVTFKESKLRNEKLTMLTAYDYSTAKIIDEAGINGILVGDSLGMVCLGHEDTLSVT MEDMIHHTRAVTRGAKNTLVVADMPFMSYQTSVYDSVVNAGRLIKEGRAQVVKLEGGIEV CDKIEAIVKASIPVMAHIGLTPQSVNAFGGFKVQGKDKEAAKELIRAAKAVEKAGAFAVV LECVPTKLAELISKEISIPTIGIGAGAGCDGQILVYQDMLGMYSDFTPKFVKKYANLSEE MNKAFTKYIEEVKDGVFPGPEHGFKISDDVLEKLY >gi|308151737|gb|GL476285.1| GENE 16 12297 - 13145 412 282 aa, chain + ## HITS:1 COG:CAC2915 KEGG:ns NR:ns ## COG: CAC2915 COG0414 # Protein_GI_number: 15896168 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Clostridium acetobutylicum # 1 281 1 281 281 383 67.0 1e-106 MVIFKTVNDVRSQVKEWKKQGLKVGLVPTMGYLHEGHESLIRKASKENDKVVVSIFVNPT QFGKNEDLGSYPRDLERDIEVCTRGRATAIFNPEVEEMYCDNASTFVNITGLTEGLCGAS RPIHFRGVCTVVSKLFNIIPADRAYFGEKDAQQLAVIKRMVRDLNIDIDVVGCPIIREED GLAKSSRNTYLSLEERSSATILNKSLTLAKEALNNGERDSLKIIEIISKNINTYNLAKID YVEVVDSLSLQRVNYIEKSVLVAIAVFIGKTRLIDNFTFELQ >gi|308151737|gb|GL476285.1| GENE 17 13158 - 13553 287 131 aa, chain + ## HITS:1 COG:CAC2916 KEGG:ns NR:ns ## COG: CAC2916 COG0853 # Protein_GI_number: 15896169 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Clostridium acetobutylicum # 1 126 1 126 127 167 62.0 7e-42 MKVTMLKGKIHRAKVEQAELDYVGSITVDMDLLEAAGIYEYEKVQIVDVNNGNRFETYTI AGERGTGMICLNGAAARCVSTGDKIILMAYCELNENEVKDHRPKVVFVDDNNKVERVTSY EKHGRLSDIIL >gi|308151737|gb|GL476285.1| GENE 18 13706 - 13819 67 37 aa, chain - ## HITS:1 COG:pli0076 KEGG:ns NR:ns ## COG: pli0076 COG2801 # Protein_GI_number: 18450358 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 215 249 269 66 82.0 1e-11 MKKEELNRRSFHSIEEVRLACFAYIEGFYNTKRPHGT >gi|308151737|gb|GL476285.1| GENE 19 13823 - 14002 96 59 aa, chain - ## HITS:1 COG:SPy0565_2 KEGG:ns NR:ns ## COG: SPy0565_2 COG2801 # Protein_GI_number: 15674656 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 11 59 182 230 251 73 63.0 6e-14 KFVKKTVAIPLTSSVLFHTDQGSQYTSFEFRKFIEDHPIVHSLSKPGYPWDNAVTEAFF Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:57 2011 Seq name: gi|308151736|gb|GL476286.1| Enterococcus faecalis TX4000 genomic scaffold Scfld99, whole genome shotgun sequence Length of sequence - 1366 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 76 - 366 221 ## COG2963 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 402 - 1238 335 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|308151736|gb|GL476286.1| GENE 1 76 - 366 221 96 aa, chain + ## HITS:1 COG:BH0334 KEGG:ns NR:ns ## COG: BH0334 COG2963 # Protein_GI_number: 15612897 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 94 1 94 94 109 70.0 1e-24 MSKRTRRTFSQEFKQQIVNLYLDGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNL TPEQKELLELRKRNQQLEMENDILKQAALIFGRRDK >gi|308151736|gb|GL476286.1| GENE 2 402 - 1238 335 278 aa, chain + ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 256 1 257 261 281 53.0 8e-76 MCRILGLSRQSYYYQSKPKKDESELEEVVAEEFIRSRKAYGSRKIKKALSKRGIKISRRK ISRIMKNRGLKSSYTVAYFKVHHSTCNEAKTTNVLNRKFLRDNPLEAIVTDLTYVRVGKK WNYVCFILDLFNREILGYSCGEHKDAVLVKKAFSRIKQPLTEVEIFHTDRGKEFDNQAID ELLTTFDINRSLSHKGCPFDNAVAESTYKSLKVEFVYQYTFETLQQLDLELFDYVNWWNH LRLHGTLGYETPVGYRNQRLAQRILDNELGCANASEAV Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:58 2011 Seq name: gi|308151735|gb|GL476287.1| Enterococcus faecalis TX4000 genomic scaffold Scfld104, whole genome shotgun sequence Length of sequence - 641 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 4 - 74 71.8 # Gly TCC 0 0 - TRNA 76 - 152 88.4 # Asp GTC 0 0 - TRNA 191 - 264 74.1 # Met CAT 0 0 - TRNA 298 - 387 62.1 # Ser TGA 0 0 - TRNA 421 - 494 89.2 # Met CAT 0 0 - TRNA 515 - 588 77.6 # Met CAT 0 0 Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:18:59 2011 Seq name: gi|308151734|gb|GL476288.1| Enterococcus faecalis TX4000 genomic scaffold Scfld107, whole genome shotgun sequence Length of sequence - 959 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 959 1109 ## COG1087 UDP-glucose 4-epimerase Predicted protein(s) >gi|308151734|gb|GL476288.1| GENE 1 2 - 959 1109 319 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 319 2 320 328 517 75.0 1e-146 VSILVLGGAGYIGSHAVDQLISKGYAVVVVDNLLTGHRSAVHEQATFYEGDIRDKAFLRS VFEKESIEGVLHFAANSLVGESVEKPLMYFNNNVHGTQIALEVMQEFGVKHIVFSSTAAT YGEPKAMPITEETPTNPKNPYGESKLMMEKIMKWCDNAYGMKYVALRYFNVAGAKKDASI GEDHTPETHIVPIILQVALGQRAELSIFGDDYDTPDGTCIRDYVYIEDLIAAHILALEYL KNGGESDVFNLGSNNGYSVKEMLDAAREVTGQEIPATIAPRRAGDPSTLIASSEKAKRVL GWQPEVTEVKDIIATAWQW Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:19:01 2011 Seq name: gi|308151733|gb|GL476289.1| Enterococcus faecalis TX4000 genomic scaffold Scfld108, whole genome shotgun sequence Length of sequence - 5340 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 343 - 382 -0.7 1 1 Tu 1 . - CDS 417 - 1388 1068 ## COG1834 N-Dimethylarginine dimethylaminohydrolase - Prom 1413 - 1472 8.8 - Term 1445 - 1490 9.1 2 2 Tu 1 . - CDS 1500 - 2915 1686 ## COG1785 Alkaline phosphatase - Prom 2945 - 3004 4.0 3 3 Tu 1 . - CDS 3033 - 4946 2079 ## COG1193 Mismatch repair ATPase (MutS family) Predicted protein(s) >gi|308151733|gb|GL476289.1| GENE 1 417 - 1388 1068 323 aa, chain - ## HITS:1 COG:MA3652 KEGG:ns NR:ns ## COG: MA3652 COG1834 # Protein_GI_number: 20092452 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Methanosarcina acetivorans str.C2A # 2 323 4 332 334 152 30.0 7e-37 MKKMHVESEFAPLRSVVLAQSQFCLPDKFDEADTTFLTEENARLTQNNEGRDLADFAPEQ QVRWEKEKEVMQGVLESYGVEVFRPRLLTTYEKEHGKELGVGYSNFFSRDPFFTIGNLLI EGNLRFQHRRQEILPIRPIIQQWTQEAEGYYFAAPQPDISEGALSEAGPFIEGGDVLILG TTIFVGYSGLASNLAGIQWLANMIGHFGYEVVPVRLHPHILHLDCALSLLREGLMIVCEE AFLDGLPAQLANWEKIHVTLQEAAYLVTNGLPLNEETYITDQSFTTLIPQIEAKGIKVEA IDYHVSRMLGGSFRCTTQALIRE >gi|308151733|gb|GL476289.1| GENE 2 1500 - 2915 1686 471 aa, chain - ## HITS:1 COG:BS_phoB KEGG:ns NR:ns ## COG: BS_phoB COG1785 # Protein_GI_number: 16077641 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Bacillus subtilis # 35 452 27 450 462 470 64.0 1e-132 MKKRALLGVTLLTFTTLAGCTNLSEQKSGEKQTEVAEAKATESEKAPVKNVIFMIGDGMG NPYTTGYRYFKANHSDKRVPQTAFDTYLVGQQATYPEDEEENVTDSASAATAMAAGVKTY NNAIALDNDKSKTETVLERAKKVGKSTGLVATSEITHATPAAYGAHNVSRKNMAEIADDY FDDQIDGQHKVDVLLGGGSELFARKDRDLVKEFSQAGYGHVTDKKSLNENQDDKILGLFA PGGLPKMIDRTEEVPSLADMTEAALQRLDKNEKGFFLMVEGSQIDWAGHSNDIVGAMSEM QDFEAAFEKAIDFAKKDGETLVVTTADHSTGGLSLGKGDQYNWLTEPLHAAKRTPDFMAE EIIKNGNVEKTVTEYIDFQLSEAELKAVKTASESKDVEKIAQALRKIFDERSNTGWTTGG HTGEDVNVYAYGPQAEAFSGQIDNTDQAKIIFGLVDGTGQKAEIKDKGIGK >gi|308151733|gb|GL476289.1| GENE 3 3033 - 4946 2079 637 aa, chain - ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 1 626 1 625 629 517 43.0 1e-146 MNHETIQKLQFTTILKEVQTRAIGEYSKERLAKMVPATRLETVQSRLTETTEARLIIDSG QHVPFMGLSQITRLLQQVKKGLILTPNELIEVADFLRSSQRIQKFFEKNQYQTPRLFSYS QHLADFRAIEEQIYTKIHNQKVATDASRQLRKIRRQINECQQEIETKVTKFLRNKNNQLY IQENMMVKKGEHYTVPIKASYKNKVSGTIIEQSNKGQTVFIEPVAISKLNEQLTLLKAEE TAEEYQILAELTGLINEQERLVDQAVDTMTTLDIIFARGKYSREIGGITPKVNKEERLRI VQGKHPLLLEHAVPLTFSLGAEYRGLVITGANAGGKTVVLKTVGLLTVMTQFGLQIPAQA GTEIPVLDEIFVDIGDQQNLENALSTFSGHMKNIAEMLRNVKRHTLVLLDEIGSGTEPNE GAGLAIAIMETMYQKGALVVATTHYGEIKRFAQEHDDFVPAAMAFDRETLTPKYQLKIGE VGDSQALWIARKMKMEPQLIEKAAHYIQRKEYPTNRSLFKPLKAKETTFAMFVKETHRYQ KGDRVLLTETQQIGLVFTDEGEQEIQVFVNDKIENVPRRRLKLQAKAQDLYPQDYDLESL FTDFHERKKLKDIERGSKKAQKQLRKEAEKRAARRDK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:19:32 2011 Seq name: gi|308151732|gb|GL476290.1| Enterococcus faecalis TX4000 genomic scaffold Scfld115, whole genome shotgun sequence Length of sequence - 108640 bp Number of predicted genes - 113, with homology - 107 Number of transcription units - 52, operones - 31 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 24 - 122 151 ## 2 1 Op 2 . - CDS 155 - 1339 943 ## COG2946 Putative phage replication protein RstA - Prom 1485 - 1544 2.5 - Term 1624 - 1665 6.5 3 2 Op 1 . - CDS 1688 - 1855 263 ## 4 2 Op 2 . - CDS 1848 - 1979 80 ## gi|293568988|ref|ZP_06680301.1| zeta toxin - Term 2026 - 2076 2.1 5 3 Op 1 . - CDS 2083 - 2523 487 ## EF1889 hypothetical protein - Prom 2549 - 2608 2.1 - Term 2541 - 2586 -0.6 6 3 Op 2 . - CDS 2610 - 2966 324 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 7 4 Tu 1 . - CDS 3068 - 3874 129 ## BpOF4_20219 putative COX1/OXI3 intron 2 protein - Prom 3913 - 3972 3.4 8 5 Op 1 . - CDS 5535 - 6551 718 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 9 5 Op 2 . - CDS 6621 - 6965 453 ## EF1893 hypothetical protein 10 5 Op 3 . - CDS 6975 - 7349 497 ## EF1894 hypothetical protein 11 5 Op 4 . - CDS 7362 - 7676 446 ## EF1895 hypothetical protein - Term 7706 - 7749 5.1 12 6 Op 1 . - CDS 7789 - 11016 2769 ## COG4932 Predicted outer membrane protein - Term 11042 - 11080 4.5 13 6 Op 2 . - CDS 11096 - 11758 332 ## EF1897 hypothetical protein - Term 12054 - 12094 6.1 14 7 Op 1 33/0.000 - CDS 12129 - 12524 654 ## PROTEIN SUPPORTED gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 - Prom 12558 - 12617 5.3 15 7 Op 2 30/0.000 - CDS 12620 - 13360 867 ## COG0336 tRNA-(guanine-N1)-methyltransferase 16 7 Op 3 . - CDS 13350 - 13874 686 ## COG0806 RimM protein, required for 16S rRNA processing - Prom 13903 - 13962 7.3 - Term 13933 - 13975 7.0 17 8 Tu 1 . - CDS 13982 - 15343 1683 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 15404 - 15463 9.0 + Prom 15389 - 15448 8.2 18 9 Tu 1 . + CDS 15540 - 15914 428 ## EF1902 glyoxylase family protein + Term 15921 - 15962 -0.1 + Prom 16055 - 16114 8.1 19 10 Tu 1 . + CDS 16145 - 16744 730 ## COG0398 Uncharacterized conserved protein + Term 16764 - 16817 5.5 + Prom 16746 - 16805 4.2 20 11 Tu 1 . + CDS 16845 - 18647 1413 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Term 18731 - 18784 7.5 21 12 Op 1 . - CDS 18837 - 19523 925 ## COG0670 Integral membrane protein, interacts with FtsH 22 12 Op 2 . - CDS 19516 - 20001 692 ## COG2030 Acyl dehydratase - Prom 20024 - 20083 6.6 - Term 20121 - 20180 3.2 23 13 Tu 1 . - CDS 20199 - 21536 1485 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 21629 - 21688 8.2 - Term 21639 - 21685 5.7 24 14 Tu 1 . - CDS 21691 - 22635 1066 ## EF1909 hypothetical protein - Prom 22661 - 22720 6.2 - Term 22709 - 22760 7.1 25 15 Tu 1 . - CDS 22762 - 23721 1116 ## COG4129 Predicted membrane protein - Prom 23760 - 23819 6.2 + Prom 23676 - 23735 4.8 26 16 Tu 1 . + CDS 23824 - 24435 641 ## COG4129 Predicted membrane protein + Term 24437 - 24486 11.4 - Term 24425 - 24474 11.4 27 17 Op 1 . - CDS 24476 - 25357 1069 ## COG1940 Transcriptional regulator/sugar kinase 28 17 Op 2 . - CDS 25360 - 25662 408 ## COG0759 Uncharacterized conserved protein - Prom 25803 - 25862 10.0 + Prom 25760 - 25819 5.0 29 18 Tu 1 . + CDS 25840 - 25992 249 ## 30 19 Op 1 4/0.000 - CDS 26009 - 26590 771 ## COG0218 Predicted GTPase - Prom 26622 - 26681 2.0 - Term 26620 - 26685 13.3 31 19 Op 2 . - CDS 26688 - 27941 267 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 27980 - 28039 2.9 + Prom 28023 - 28082 8.2 32 20 Tu 1 . + CDS 28133 - 29161 1242 ## COG2706 3-carboxymuconate cyclase + Term 29190 - 29242 13.1 - Term 29178 - 29229 12.1 33 21 Op 1 . - CDS 29252 - 29728 320 ## EF1919 acetyltransferase 34 21 Op 2 . - CDS 29740 - 31113 1447 ## COG3069 C4-dicarboxylate transporter 35 21 Op 3 . - CDS 31130 - 32050 1168 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 32191 - 32250 7.6 + Prom 32141 - 32200 9.6 36 22 Op 1 . + CDS 32233 - 34143 1570 ## COG0524 Sugar kinases, ribokinase family + Prom 34183 - 34242 8.2 37 22 Op 2 . + CDS 34262 - 35770 989 ## EF1923 hypothetical protein + Term 35988 - 36037 10.7 - Term 35808 - 35877 20.0 38 23 Op 1 . - CDS 36089 - 36931 724 ## EF1925 hypothetical protein 39 23 Op 2 . - CDS 36924 - 37463 415 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 37484 - 37543 9.9 - Term 37641 - 37710 8.0 40 24 Op 1 4/0.000 - CDS 37736 - 38455 1190 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 41 24 Op 2 5/0.000 - CDS 38463 - 40292 2218 ## COG0578 Glycerol-3-phosphate dehydrogenase 42 24 Op 3 . - CDS 40313 - 41818 1823 ## COG0554 Glycerol kinase - Prom 41903 - 41962 8.1 - Term 42038 - 42088 7.5 43 25 Op 1 . - CDS 42095 - 43561 1170 ## EF1931 hypothetical protein 44 25 Op 2 . - CDS 43551 - 44885 1321 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 45093 - 45152 10.5 + Prom 44927 - 44986 7.6 45 26 Op 1 . + CDS 45065 - 45421 451 ## EF1933 hypothetical protein 46 26 Op 2 . + CDS 45455 - 45616 218 ## EF1934 hypothetical protein + Term 45620 - 45675 16.1 - Term 45680 - 45713 4.5 47 27 Op 1 . - CDS 45859 - 46299 679 ## EF1936 hypothetical protein 48 27 Op 2 . - CDS 46369 - 46905 167 ## PROTEIN SUPPORTED gi|83643376|ref|YP_431811.1| acetyltransferase - Term 46917 - 46962 8.3 49 27 Op 3 . - CDS 46975 - 49680 3503 ## COG0474 Cation transport ATPase - Prom 49924 - 49983 9.3 - Term 49871 - 49920 4.3 50 28 Tu 1 . - CDS 49998 - 50648 612 ## EF1939 hypothetical protein + Prom 50581 - 50640 8.4 51 29 Op 1 . + CDS 50737 - 51402 616 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 52 29 Op 2 . + CDS 51474 - 51869 536 ## EF1941 hypothetical protein + Prom 51899 - 51958 5.0 53 30 Tu 1 . + CDS 51979 - 53160 1135 ## COG0477 Permeases of the major facilitator superfamily + Term 53172 - 53203 3.1 - Term 53159 - 53190 3.1 54 31 Tu 1 . - CDS 53197 - 55032 1564 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 55060 - 55119 7.2 + Prom 54914 - 54973 7.0 55 32 Op 1 . + CDS 55137 - 55238 95 ## 56 32 Op 2 . + CDS 55241 - 55390 266 ## EF1947 hypothetical protein + Term 55439 - 55495 4.2 + Prom 55451 - 55510 5.4 57 33 Tu 1 . + CDS 55541 - 55900 334 ## COG5646 Uncharacterized conserved protein - Term 55864 - 55917 17.2 58 34 Op 1 . - CDS 56100 - 56450 426 ## COG4898 Uncharacterized protein conserved in bacteria 59 34 Op 2 3/0.000 - CDS 56524 - 57528 1249 ## COG2222 Predicted phosphosugar isomerases 60 34 Op 3 3/0.000 - CDS 57522 - 58598 903 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 61 34 Op 4 13/0.000 - CDS 58609 - 59439 928 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 62 34 Op 5 13/0.000 - CDS 59423 - 60214 891 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 63 34 Op 6 9/0.000 - CDS 60230 - 60700 587 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 64 34 Op 7 3/0.000 - CDS 60712 - 61131 507 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Term 61155 - 61189 3.2 65 34 Op 8 . - CDS 61203 - 63974 2314 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 64018 - 64077 7.3 - Term 64312 - 64357 4.3 66 35 Op 1 . - CDS 64545 - 65906 1169 ## COG0232 dGTP triphosphohydrolase 67 35 Op 2 . - CDS 65923 - 66747 631 ## EF1959 hypothetical protein - Prom 66984 - 67043 17.4 - Term 67071 - 67110 3.2 68 36 Tu 1 . - CDS 67136 - 68434 1761 ## COG0148 Enolase - Prom 68482 - 68541 5.1 69 37 Op 1 13/0.000 - CDS 68566 - 69321 879 ## COG0149 Triosephosphate isomerase 70 37 Op 2 26/0.000 - CDS 69370 - 70563 1491 ## COG0126 3-phosphoglycerate kinase - Prom 70587 - 70646 3.1 - Term 70606 - 70642 6.3 71 37 Op 3 5/0.000 - CDS 70690 - 71691 1403 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 72 37 Op 4 . - CDS 71731 - 72768 1006 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 72901 - 72960 7.2 - Term 73129 - 73176 11.0 73 38 Tu 1 . - CDS 73188 - 74066 916 ## COG1284 Uncharacterized conserved protein - Prom 74108 - 74167 6.2 74 39 Op 1 2/0.111 - CDS 74209 - 74778 798 ## COG4475 Uncharacterized protein conserved in bacteria 75 39 Op 2 3/0.000 - CDS 74775 - 75281 652 ## COG4720 Predicted membrane protein 76 39 Op 3 . - CDS 75265 - 76080 776 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 76101 - 76160 5.1 - Term 76195 - 76236 8.1 77 40 Op 1 13/0.000 - CDS 76255 - 78024 2315 ## COG0173 Aspartyl-tRNA synthetase 78 40 Op 2 . - CDS 78042 - 79343 1669 ## COG0124 Histidyl-tRNA synthetase - Prom 79443 - 79502 4.4 79 41 Op 1 7/0.000 - CDS 79701 - 80147 553 ## COG1490 D-Tyr-tRNAtyr deacylase 80 41 Op 2 . - CDS 80171 - 82384 2617 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 82439 - 82498 8.0 - Term 82556 - 82588 -0.0 81 42 Op 1 9/0.000 - CDS 82599 - 83351 754 ## COG1385 Uncharacterized protein conserved in bacteria 82 42 Op 2 . - CDS 83353 - 84300 1600 ## PROTEIN SUPPORTED gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase 83 42 Op 3 . - CDS 84316 - 84801 682 ## EF1977 hypothetical protein 84 42 Op 4 . - CDS 84758 - 85435 721 ## COG2094 3-methyladenine DNA glycosylase - Prom 85534 - 85593 6.8 + Prom 85482 - 85541 4.2 85 43 Op 1 . + CDS 85564 - 86841 1568 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 86846 - 86905 1.7 86 43 Op 2 . + CDS 86925 - 87128 86 ## + Term 87130 - 87161 1.1 87 43 Op 3 . + CDS 87169 - 87447 277 ## EF1980 hypothetical protein + Term 87466 - 87507 9.2 + Prom 87529 - 87588 8.9 88 44 Tu 1 . + CDS 87625 - 88098 667 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 88106 - 88166 19.3 - Term 88157 - 88200 13.0 89 45 Op 1 7/0.000 - CDS 88210 - 89397 1500 ## COG0282 Acetate kinase 90 45 Op 2 . - CDS 89422 - 90393 1045 ## COG0827 Adenine-specific DNA methylase - Prom 90472 - 90531 8.2 - Term 90479 - 90527 0.3 91 46 Op 1 . - CDS 90558 - 90911 333 ## EF1985 hypothetical protein 92 46 Op 2 . - CDS 90911 - 91345 338 ## COG4940 Competence protein ComGF 93 46 Op 3 . - CDS 91335 - 91661 216 ## EF1987 hypothetical protein - Prom 91697 - 91756 5.5 + Prom 91873 - 91932 7.0 94 47 Tu 1 . + CDS 92040 - 92165 185 ## + Term 92313 - 92371 12.1 95 48 Tu 1 . - CDS 92463 - 93404 551 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - TRNA 93434 - 93507 68.0 # Met CAT 0 0 - Term 94080 - 94117 -0.4 96 49 Op 1 . - CDS 94120 - 94365 141 ## EF1990 hypothetical protein - Prom 94403 - 94462 9.0 - Term 94408 - 94453 8.7 97 49 Op 2 . - CDS 94464 - 94664 317 ## COG1278 Cold shock proteins - Prom 94864 - 94923 8.0 - Term 95386 - 95441 5.0 98 50 Op 1 . - CDS 95529 - 96770 1549 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 99 50 Op 2 . - CDS 96771 - 97004 334 ## COG5546 Small integral membrane protein 100 50 Op 3 . - CDS 96997 - 97218 260 ## gi|227555456|ref|ZP_03985503.1| hypothetical protein HMPREF0346_2619 101 50 Op 4 . - CDS 97253 - 97408 225 ## EF1994 hypothetical protein 102 50 Op 5 . - CDS 97410 - 97730 397 ## EF1995 hypothetical protein 103 50 Op 6 . - CDS 97744 - 98235 611 ## gi|227519338|ref|ZP_03949387.1| hypothetical protein HMPREF0348_2321 104 50 Op 7 . - CDS 98235 - 98522 464 ## MPTP_1473 hypothetical protein 105 50 Op 8 . - CDS 98519 - 99115 789 ## MPTP_1474 hypothetical protein 106 50 Op 9 . - CDS 99108 - 99989 1004 ## EF2810 hypothetical protein 107 50 Op 10 4/0.000 - CDS 100008 - 102800 2435 ## COG4926 Phage-related protein 108 50 Op 11 2/0.111 - CDS 102797 - 103552 448 ## COG4722 Phage-related protein 109 50 Op 12 . - CDS 103521 - 106445 2860 ## COG5412 Phage-related protein - Prom 106468 - 106527 2.8 110 51 Tu 1 . - CDS 106666 - 107016 521 ## EF2004 hypothetical protein - Term 107024 - 107057 5.1 111 52 Op 1 . - CDS 107069 - 107917 1067 ## COG5492 Bacterial surface proteins containing Ig-like domains 112 52 Op 2 . - CDS 107918 - 108292 237 ## EF2006 hypothetical protein 113 52 Op 3 . - CDS 108295 - 108639 305 ## EF2007 hypothetical protein Predicted protein(s) >gi|308151732|gb|GL476290.1| GENE 1 24 - 122 151 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLAFGGSMLSVTVMCLMHASVAANQAMEKKV >gi|308151732|gb|GL476290.1| GENE 2 155 - 1339 943 394 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 66 394 27 352 352 255 42.0 9e-68 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLES FNPDLPLSLLFDYVRIRFPTTDARKIIQEILHLKFDYMLHEDYAFYSYQEQYVMGDIVVM LSHEEDKGVLLELKGRGCRQFETFLLAQKRSWYDFFEDCLKAGGVMKRLDLAINDLVGLL DIPDLTKKCQKEECISLFRTFKSYRSGELLKADEKDGMGNTLYIGSLKSEVYFCLYEKDY EQYIKLGIPLDKTETKNRFEIRLKNDRAYHAIQDLLKGRSIESTTFSIINRYLRFADKVE GKRRTNWPLNEQWGRFIGRNRKEIQLTSEPKPYTIERTLNWLGRQVAPTWKMAKELDRLN QTTYIQDMVQNARLSDRHKKILEQQSMAIENLII >gi|308151732|gb|GL476290.1| GENE 3 1688 - 1855 263 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEKEKVEEIMEKYNRNFSTLQKNASAKELKTVFKFVADESNRKQRELIGLDKEK >gi|308151732|gb|GL476290.1| GENE 4 1848 - 1979 80 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293568988|ref|ZP_06680301.1| ## NR: gi|293568988|ref|ZP_06680301.1| zeta toxin [Enterococcus faecium E1071] zeta toxin [Enterococcus faecium E1071] # 1 43 182 224 224 77 93.0 5e-13 MTINILVKDFQNTISDFLMDIDNVELTLPISYTKEILEEELHD >gi|308151732|gb|GL476290.1| GENE 5 2083 - 2523 487 146 aa, chain - ## HITS:1 COG:no KEGG:EF1889 NR:ns ## KEGG: EF1889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 146 1 146 146 273 100.0 2e-72 MTEDDSLQYAKENKKEIISSVIDGKEKEEEKTAIFMAGSPGAGKTEAAQTLTVLNSNLCV IDADKFRVLFPGYVGNNSDEFQRGSSLLVDAALDLVLKKGYSFILDATFATSKVKQNIER ALKKNYNVLVYYVYQDPFIAWDFTKK >gi|308151732|gb|GL476290.1| GENE 6 2610 - 2966 324 118 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 1 110 337 446 480 141 60.0 3e-34 MLTTKESAVILNKLKQIVMLGRQSGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEL GYSMMFGEVDKNFFMKRIKGRGYVDTGGSVISEFYTPLVPKGYDFLESIKQVAQSKEK >gi|308151732|gb|GL476290.1| GENE 7 3068 - 3874 129 268 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_20219 NR:ns ## KEGG: BpOF4_20219 # Name: not_defined # Def: putative COX1/OXI3 intron 2 protein # Organism: B.pseudofirmus # Pathway: not_defined # 3 268 34 298 304 223 46.0 8e-57 MRETKGEKWVCNSHISDKKKNQIKKEIKQRIKDIQKSPTAQNALLFNALVLGVHNYFRYA THINLDLNRMNYVLSFTTYNRLSNCSTRCYPNKASPTYKKFYSTTMKTYKVAGVYLYPLC DVSTKTIYGFNTEDTPFTPFGRQRLEHKSLQSLVYQELRKLMESKILNRMVEYLDNRISR YSMKSGKCEITKQFLPAKAVHCHHYLPKSLGGDDKFDNLRIIHKDIHLLIHTTNKMIIDH YVNELKLLPEQIAKINLYRKMCNLQNIQ >gi|308151732|gb|GL476290.1| GENE 8 5535 - 6551 718 338 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 31 328 41 335 480 266 46.0 3e-71 MYKEHRIRARDQHLVYHFILGWLIALLISWMGVFYFQEFRQFDISRVSLSTIETVWSMKE LICLLGSLGFSGAMLLLYIHFFPDHWRSLWHRQKLARMILENHWYEVKQTQSEGFFKDLN SSRTRETISYFPKIYYRMKEGLLSIRVQISLGKYQEQLLKLEKKLESGLYCELVEKELKD SYVEYTLLYDMIANRIGIDEVVAENGTLRLMKNQVWAYDSLPHMLIAGGTGGGKTYFLLT IIEALLKSDAELFILDPKNADLADLGTVMPHVYSQKEEISACVEDFYERMIARSKAMKEM PNYKPGENYAYLGLPPNFLIFDEYVAYMGANRFPTSIE >gi|308151732|gb|GL476290.1| GENE 9 6621 - 6965 453 114 aa, chain - ## HITS:1 COG:no KEGG:EF1893 NR:ns ## KEGG: EF1893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 4 116 117 184 100.0 7e-46 MEINVEHILDCLDQYGKGELTEEQLVKALTYDEKMFLIMHQGLLGENSDSEDDFDVQDWL EEEESFFMVVEVNENLCRQAESVLEEIGVEMPDAIEGFLNQLVEKKQFPVVING >gi|308151732|gb|GL476290.1| GENE 10 6975 - 7349 497 124 aa, chain - ## HITS:1 COG:no KEGG:EF1894 NR:ns ## KEGG: EF1894 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 228 100.0 8e-59 MRLTEGIVVDSVLTFGKLRFSALRREVRKQNEDGTVSNEVKERTYNLKSSAQGRMIQVSI PANVPLREFAYDAEVELVNPIVDTVANYVFREGTTVNWFIKADDLVLKRQPNQGNSTNQI EGKK >gi|308151732|gb|GL476290.1| GENE 11 7362 - 7676 446 104 aa, chain - ## HITS:1 COG:no KEGG:EF1895 NR:ns ## KEGG: EF1895 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 195 100.0 5e-49 MELKFVVPDMAETFGKLSYAGEGEILTEGYGRNTTVIGRSYHLYSSKQRADDIEVVVAAE AGEKDFDQDQPLKAVNPHLVAKGYEIENRGFTDYVLYVDDLVKE >gi|308151732|gb|GL476290.1| GENE 12 7789 - 11016 2769 1075 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 279 700 1085 1453 1661 69 26.0 3e-11 MIKPIFKKWRLFAALALLGQTIVGAIDPMIVFADEIAHPQTVTVELDLAHQYVVEGTFSD GRPMSEVTVPHYAVYNGVKQDVFCIEPGVPIDNEFTPGYEKNPLPDMPEKAKLVSVLWKK AGTDVDTHIVAQKMIWQEVNGYTLHSIKRLNGSAVNIAAIEAKINQAIADYQKKPSFHNS TAKIVLGQSTTMTDTNNLNLSEFDEVVENTANIDYRVNGNQLIITPNASSKESGVLTLKK SAGTGTPVAYKKVGQQTLMAGAIDKPNTYTVKIDVETEGSLKIKKVDKESGAIVPGTVFH LDFGKTLPAKDVTTDKEGIATLDGIPHGTKVTITEKSVPAPYTIDTIAMTATIKAGETIF MTSKNTREKGQIILDKTGIETGSDLWNDNYSLAGNTFAIRKDSPTGEIVQEMTTDEKGHA ETPKEIANALELGTYYVTETKASNGFVNTFKAVKVELKYANQTVALVTSNIKGQNQEITG ETTLIKEDKDTGDKTQGRAVFEGTEYTLFTAKDGKAVKWSEAFKPELVKGTKASDETVTL ALDEKNQAAVKHLAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNEKNAVITRDVTAKE QIIRFGFDFFKFAGSAAGTAETGFNDLTFKVSPLEGTNEITGAEDEAITAYNEQLGFDGY GKFENLPYGDYLLEEVEAPEGFQKITPLEIRFTFKENKEDFVKSEYVFTITEQGQKQPIK TVTVPYEKLTNKAFSVSLNRLMLYDLPEEEDSLTSLATWKDGNKELSTLDSTELVDKLSY NLHEIKEDWYVVAQAIDVEATKDAQEKDEKAKPVVIAETTTTLANKEKTGTWKIRHKLTT EQVLDKTIVLFNYVYENKEAFEAGDEPVAKDASLNNQAQTVNCTVERHVSIQTKAHLEDG SQTFTHGDVVDMFDDVSITHDVLDGSKEAFETILYALLPDGTNKEIWKSGKIDYEVNDKE FTKTMLAEKVDTGKFPESTKFTFAEINYDKDENINGKHNEDLKEKNQTLTPKKVPTTPRT PKQPETPTVPSGYQESSPTVKTFPQTGEKNSNVLLFIGFTLIFATAGYYFWNRRN >gi|308151732|gb|GL476290.1| GENE 13 11096 - 11758 332 220 aa, chain - ## HITS:1 COG:no KEGG:EF1897 NR:ns ## KEGG: EF1897 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 377 100.0 1e-103 MKQDDGRIVWKNLSDLKLILLINQFIEKHEIKSSRQYHRKLLENPNSAPSMWFINQKYGS WKNLLVSLGCDNGEYGKWAKISEKDLLKIVESFITVEKITSQRMYEKRSVGKDVPSLSTL KKRFGDIRYLFRKNTEKSSFTDFELMIELRNEIVRLKLQDDLSMTKFRKLVQSPKLPSVD TIMKRTNKNWEELMTEIGFDYRKIKINKQRNNLSKKKKTK >gi|308151732|gb|GL476290.1| GENE 14 12129 - 12524 654 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 [Enterococcus faecalis TX0104] # 1 131 1 131 131 256 99 3e-67 MAEVTIRIFGNKEKDKMNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFE GVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALH GKAARIKEIRR >gi|308151732|gb|GL476290.1| GENE 15 12620 - 13360 867 246 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 310 61.0 1e-84 MRIDVLTLFPRMFEGPMGESIIGKAREKQLLELNVSNFRDFSDNKHQTVDDYPYGGGAGM LLKVQPIYDNLKAIEEETNQQPKRVILLDPAGKPFNQKMAEEFSQEEHLVFICGHYEGYD ERIRTMVTDEVSLGDYVLTGGELGAMVMIDATVRLLPDVLGNNLSAQTDSHSTGLLEHPQ YTRPAIFNDMEVPAVLTNGNHKLIAEWQLKESLRRTFLRRPDMLESVEMTPEMLKLLEEI KQEEQK >gi|308151732|gb|GL476290.1| GENE 16 13350 - 13874 686 174 aa, chain - ## HITS:1 COG:BH2480 KEGG:ns NR:ns ## COG: BH2480 COG0806 # Protein_GI_number: 15615043 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus halodurans # 1 171 1 173 173 191 56.0 7e-49 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK NFDILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGATVYDETGSELGKI KEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDEN >gi|308151732|gb|GL476290.1| GENE 17 13982 - 15343 1683 453 aa, chain - ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 17 451 13 448 450 482 58.0 1e-136 MKEKKTEKMLNYANGPSLEEINNTVEVPKNASFWRTLLAYSGPGALVAVGYMDPGNWITS IAGGAEYKYTLLSVILLSSLVAMLLQSMAARLGIVTGMDLAQATREHTSKRTGVALWVVT ELAIMATDIAEVIGGAVALQLLFGFPLLIGVLITTFDVLLLLLLTKLGFRKIEAIVSCLI AVIFFVFAYEVALADPNVGEVLRGFIPDTKIATDKSMLFLALGIVGATVMPHNLYLHSSI AQARKFDRNDDAEKAKAIRFTTWDSNIQLTVAFVVNCLLLILGGALFYGTNSELGKFVDL FDALKNPDIVGNIASPVLSILFAIALLASGQNSTITGTLSGQIVMEGFIHLKMPLWARRV LTRLLAIVPVIICVIIYGGSETAVEDLLLYTQVFLSIALPVSIIPLTMYTSDKKLMGQFA NPAWVKFLAWIIAIALTLLNLFLIYGTLTGLTN >gi|308151732|gb|GL476290.1| GENE 18 15540 - 15914 428 124 aa, chain + ## HITS:1 COG:no KEGG:EF1902 NR:ns ## KEGG: EF1902 # Name: not_defined # Def: glyoxylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 246 99.0 2e-64 MKLDMVGIIVNDMTQALSFYQTLGFNVLGEASPDYTELQNNGVRISLNSLQMITGVYGFA PSQQGDKIELAFLCETAAEVDNTVKKMSQAGYIVFKEPWNAPWGQRYAIIKDVDANLISL FAPL >gi|308151732|gb|GL476290.1| GENE 19 16145 - 16744 730 199 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 178 53.0 7e-45 MSVTLSRKIVNIISILGIVATIIATIYFIRLGVFKDINALRGLVGQSVILGPIIFMLIQI IQVVIPIIPGGVSCAAGVLIFGPTMGFVYNYVGIALGSIIIFLLGRNYGKPFIMSLVSDK TYNKYIGWLDNEKRFERLFALAIFFPIAPDDALCLMAGLTKMSVKKFTLIILLAKPASIY LYSLALIYGGTFLTSLLGM >gi|308151732|gb|GL476290.1| GENE 20 16845 - 18647 1413 600 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 353 593 1 240 249 240 48.0 6e-63 MFSYFKNSIVNTLDFLKGTTAYFRDVLLMHGFMLFVLLPLLTSLSKLVLKEGGIDYISYD NLGAIATQHPYVLLTFLLIGLLILLALFFEFTFLLLSVYFIKKKQPITLTQLLHGTLLQI KKVRGITFLFFLAYFFLILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIIIIGFVLLEL IILYLAIRLAFALPELILRDVGFRESLKRSWQITKRRFFQILGQFIIIGGTVLGIFTAGY FLIFLGQTAVETFKPEWSLPSAVIAMTLLQVMMLLNLVLSSVAIFYIIVDDMEDEGILPD TPEWFTPKSEVRVEWTTFRVVLFCLIAIIFGIGVGTYNTNYLSHTPDRKPVTISHRGVNG NNGVQNTLDSLIETNKAKPDYVEMDIQETKDHQFIVMHDFNLRALTGVNKRPNQLTLKEL TNMNVTENGQTAKMVSFDDYLAKANQLKQRLLIEIKTTPQDSPDLVQRFVKQYRENILEN GHILHTLTYDTAMALKKEEPRFYVGYVIPFNIVGPPKMPVDFFTMEYSTMNRNFVNAAHH DGKKVYAWTANDEDVMTRMIFYGVDGIITDQLSLLNETMKTDLENPTYSDKLLNFAIGMG >gi|308151732|gb|GL476290.1| GENE 21 18837 - 19523 925 228 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 3 228 10 235 235 160 47.0 2e-39 MNNQEYIQTGTGLNKFYAKIYGFLALGIGISAIMAYAMTTVFLPVLATLFQSSLAFWMIW LVEIGLVLYLGAKAQKNPTIAIAGFVAYALLNGVTLSVTLLMYTGGTVAGAFLSAAATFG AMSLVGVFTKKDLSAVGHAAYSALIGIIIAMLLNMFLLHSSAVEFFISILMVLIFSGITA YDNQRIRQVYAQTGDQAGTGMAVFFALQLYLDFINLFLAFLRIFGKNN >gi|308151732|gb|GL476290.1| GENE 22 19516 - 20001 692 161 aa, chain - ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 14 137 4 127 134 70 29.0 1e-12 MNIGKPRKLGKTIEDIEEGDSLSLTESIEDKDLLLYLGLTNDANPLYIQHDYAQKTEYEK PIVPSIMLMGIITSAISKHLPGPGSHVVNFSVNFVEPVFHYETLTFQLEVIKVDKMKDVI TISVEAVNEQENRVLDAVVMVQPPQVTIDELTEKEGTLTYE >gi|308151732|gb|GL476290.1| GENE 23 20199 - 21536 1485 445 aa, chain - ## HITS:1 COG:lin1646 KEGG:ns NR:ns ## COG: lin1646 COG0773 # Protein_GI_number: 16800714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Listeria innocua # 8 439 3 433 447 552 60.0 1e-157 MGNQENKLYHFVGIKGSGMSSLALVLHQKGYNVQGSDVEEYFFTQRDLEKSGVPILPFNA DNIDKDMIVIAGNAFPDTHEEIARAIELGAEVIRYHDFIARFIEPYTSIAVTGSHGKTST TGLLAHVLSGINPTSYLIGDGTGHGEPDADFFAFEACEYRRHFLAYSPDYAIMTNIDFDH PDYYKSIEDVFSAFQTMAHQVKKGIFAYGDDKYLRQLESEVPVYYYGVSEEDDIQARNIQ RTTEGSSFDVYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGV KRRFSEKKVSDMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEF AEALDLADEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDFENAVVVF MGAGDVQKFEQAYETLLSNTTRNVL >gi|308151732|gb|GL476290.1| GENE 24 21691 - 22635 1066 314 aa, chain - ## HITS:1 COG:no KEGG:EF1909 NR:ns ## KEGG: EF1909 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 471 100.0 1e-131 MDNAQVKRKHFRFPAYDDEQGVKLPTDNERNLFQDDLIGKAMSGSRRTATSAEDTRQSTP SVQQPTTNQSTTNKQTQQLTAAQQEQLARHRSNLPDYTKHASKATKNKQATKKNNSLFGT PKGNGWTQTYKKKEVVAKPSRPAASPLVQKTTPSYFVPKYIPASVIPEEQEPSFTEEELL KAMKKDRRSYVILDDEPTAFQVKDTEEDPTVRKFNIPTSEPEIPLTRRQYQQIKPDLERF GEDALDLRSRSRLNAAKKNAKSQTAYGKKLAKANAQVEPEAPVTEEKKKGILDKPLSGML EDSSSVLENSKYFS >gi|308151732|gb|GL476290.1| GENE 25 22762 - 23721 1116 319 aa, chain - ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 312 1 312 327 224 41.0 2e-58 MKIGLRTVKTAISAALAMIIAEKLGLLYAPSAGIISVLSVTSTKKTSVMTGIYRLLSLAL ATILAYICFTFLGFTAIAFGIFLLLFIPAAVYFQLSDGIVVSSVLVTHYLVEKNLSWAII GNEFLLMSIGVGLALLANSYMPDTEKRLREDQEVIETMFRKILREMALHLNNAAGERNLV MHCADLKTFIRTGETWAKNHAENQLLSTNTYYLEYFAMRKMQSNILKNMLELLEDITVDA QQVRYIQQLLEYTAETFAENNDGQEIMNRIKTVYETYRTKPLPQTRSEFENRARLFQFLQ LFQSFIQVKADFAKLQLDK >gi|308151732|gb|GL476290.1| GENE 26 23824 - 24435 641 203 aa, chain + ## HITS:1 COG:SPy1879 KEGG:ns NR:ns ## COG: SPy1879 COG4129 # Protein_GI_number: 15675698 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 152 15 164 183 130 44.0 2e-30 MIVGRFRLGMRTLKTAIAVMLCILLFQFSHRGSPMIACLAAVFSLRQDLNTSLSFGKSRI IGNTLGGFLALLYVLAQDYFPNQHLVELLLLPLLVIIVIVVSDGINNNAGIISATATLLM ISLSIPQSDSFQYAMERVLDTFIGTFIAIGLNVFLQPKPAEEAHEISEDLAELEKKEKEL ETLRQQVQARIAAEENTDDKANK >gi|308151732|gb|GL476290.1| GENE 27 24476 - 25357 1069 293 aa, chain - ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 285 1 283 293 262 46.0 6e-70 MAILAFDLGGSSVKYGVWTGKELTNQGSFPTPGSWEEMKAHLYSVYADKRNESISGVAFS SPGVVDEKSQQILGISAIPYIHHFNIYEELEALFGLPVTIENDANCAGLAEIYEGAAKGK KEVLFVVIGTGIGGAIFRNGELYKGAHLYGGEFGLNFLSNGQTFSEIGTAVKMAQRYCER IGVEKQAVTGEEVFELAQRGDEIAREEVNNFYDYLTQGLFGLQFSYDPEMIVLGGGVSAK EGLLAEINRRMLTHLQTFELKDFVPEIVTCHYQNDANLIGAAANFQAKTNWEL >gi|308151732|gb|GL476290.1| GENE 28 25360 - 25662 408 100 aa, chain - ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 77 1 77 88 97 59.0 6e-21 MKNPLIGGVRFYQRFISPGLPARCRYYPTCSQYMIDAIHTHGSVKGTTMGVARILRCHPF VKGGIDYVPLKFRLTKNPDETYHGPYTYRRNKKTEVEKDG >gi|308151732|gb|GL476290.1| GENE 29 25840 - 25992 249 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLKFERSNDLDKLFDSFAVDPLKKEVPLEELAKQRQEVKKEEAKKQAKE >gi|308151732|gb|GL476290.1| GENE 30 26009 - 26590 771 193 aa, chain - ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 189 3 191 195 296 74.0 1e-80 MNVHNAEIVISAVSPKQYPESQLPEIALAGRSNVGKSSFINTLINRKNLARTSGKPGKTQ TLNFYLIEDALHFVDVPGYGYAKVSKTERAKWGKMIETYITQREQLRAVVSLIDLRHPPT QDDIQMYEFLKYYDLPVIIVATKADKIPRGKWNKHESVIKKALNFDKQDDFIIFSSETKE GKEAAWTAIEKFL >gi|308151732|gb|GL476290.1| GENE 31 26688 - 27941 267 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 395 248 444 466 107 32 2e-22 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHIIPEDLLKFGLIPEF IGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIE RNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKEAV >gi|308151732|gb|GL476290.1| GENE 32 28133 - 29161 1242 342 aa, chain + ## HITS:1 COG:SP1506 KEGG:ns NR:ns ## COG: SP1506 COG2706 # Protein_GI_number: 15901353 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Streptococcus pneumoniae TIGR4 # 1 341 1 335 337 345 53.0 6e-95 MLEQILLGTYTRRASQGIYKIALDTTQGRLTEATLLLEETSPTYLALSQKGELFSVTSVD GEGGTAAYQPEMDHFNLLNKVTEEGAPPCYVAVDENRQLVYAANYHQGIVHVYRILEDGS LEDADKVIHTEPTGPHENQNNAHVHYTDLTPDQRLVVCDLGTDRVYTYNVSLDGKLSEIA QFVTEPGTGPRHLVFHPTKSLAYLFGELDSTVSVLSYDETDGSFTELQKVSTLPADYDAF NGGAAIRISSDGRFLYASNRGHNSIAVYAVSENGEAIERIQLISTEGDIPRDFDLDPSED FIVVANQDSDNLTLYRRNQETGLLEMIQKDVAVPECVCVLFV >gi|308151732|gb|GL476290.1| GENE 33 29252 - 29728 320 158 aa, chain - ## HITS:1 COG:no KEGG:EF1919 NR:ns ## KEGG: EF1919 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 162 304 99.0 6e-82 MKIRVADEKELPMILQFLTEVKAYMDVVGITQWTKDYPSQGDIQEDITKKRLYLLVHEEM IFSMATLCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTN HRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELEN >gi|308151732|gb|GL476290.1| GENE 34 29740 - 31113 1447 457 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 456 5 456 459 223 36.0 6e-58 MIESLLVLVVLVVVAYLIVKNYHPALSLIIGALVLLACAWMLGHPIYPAGEGTGFGLFDI FLKFKDTIIAQVSSAGIVIMILFGYSGYMNAIGANQMAVNFLVKPLMKIKRKSLFVPVVF LIGNLMSLVVPSASSLAIILMSILYPMLASMGISSLTAAGVIAMTATIMPTPLGADNVIA ANTLGYDVLNYVVWNAKISLPSLLIIAVAQYFWQKYCDKKEGEAAYVSLNEEGLSKQKEF DVPKFYAILPILPLLLIVGVGIAGMFIKGITMDIFVLTFISFFIAVLVETLRLKSFKKVQ DTAVEMFKGMGQGFSQVVMLVVGGSLFTSAIQTLGIIDSIMASVEASSSAGIVTTLIFSG ATTLFGILSGGGLAMFYAVIELIPGIAEKAGIDGILISLPMQMIANLTRTISPVAAVVMI VASTVGVSPIRILKRTSVPTIIGIISVIVLSILLLPY >gi|308151732|gb|GL476290.1| GENE 35 31130 - 32050 1168 306 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 300 7 300 306 266 48.0 5e-71 MDTKKRPIIIDTDPGIDDAVALAIALNHPNLEVRLITTVAGNVDVEKTTNNALKLVDFFG KKVPVAKGCNCPLLIQLEDSAEIHGETGMDGFEFPQPISTCLDIHAVEAMRKEILSSDVP LTIVPIAALTNIALLLTLYPEVKENIAEIVMMGGSLARGNTNTSAEFNTYVDPHAAQIVF QSGVPLTMVGLDVTSQAVLTNHEVTAIRALGRVGEMFYGLFRHYRGGSLTTGLKMHDVCA IAYLTSPELFETTETFIEVALEGPAAGATVADLKMKYHKNTNAVACIDVNVEAFQKWVVE KMKAVN >gi|308151732|gb|GL476290.1| GENE 36 32233 - 34143 1570 636 aa, chain + ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 323 621 2 305 308 181 36.0 4e-45 MNIKDIAKLAGVSASTVSKIINNKDQTISKETRERVLKIVRDYNYTPYSANLVTNSTTKT FVLLLNSHETFEAWVTSFIDKAQENGYNCLILNSHGSLEQELKNITSPTLKQASGIIWDP INENSKQYAKFIEELTIPYYFVNHSTNELPSLAGLYEEASYVLTQELLQNNHKKISYFVT NPKYKEAIIAGYKKALFDVNLPFSKENILTTIPADFSNQLITDGITGILTDDYTQAVFLE QLLKQSGLRTPDNYSLLAIKRKIDRSFLPDHISSVLLDTETFGSQLALSLLNKRKEKTAL INEAEKLVLDHKNTLGMSSVNPHSKMIVVGSLNVDNYLYSTNLPHNGKTNFLSSYAKFPG GKGLNQAVGLTKLGHQATLIGCLGSDTDANYLYKELEKYHVTTDGITRIQDTETGQAYIY VETSGDSMISILPGANTALTPKKIAQQKHLFMDASFCLIQTEIPLSAVKKACEIAQHSGV PIILKPAAIHHIPVNILEKVDFFIPNEDELLELQPDTGTLEEKAAYFLEMGVKNVIVTLG KKGVLLKTHQVCHYFPATENIAVDSTGASDSFISALASYLSKGYPTEAAIQIAIQAAGFS VSKEGVIDSLVDHVTLENYLIKKEPALFAHRNTCVD >gi|308151732|gb|GL476290.1| GENE 37 34262 - 35770 989 502 aa, chain + ## HITS:1 COG:no KEGG:EF1923 NR:ns ## KEGG: EF1923 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 502 1 480 480 867 98.0 0 MSLIKTQDAIKTFLLSKKTQKKLAVFLYLAKQTNLDLSSVARKFDLSTKNLSIYLREIQE DLATLPENTLEIQIHHGKISLHTTSNDFLSHYFLLFNYYCVHSTDFILFQAIIKKENNSV WKVSQETNFSSSYIYKRLNNINKLFGLYGISVHFSPSASKVITGSEFQVLYAFLDVYWTI FLNTLALPRYTSTYFEDILTQHIKPEILERLEHASLLKLNLLLHIAKYRFPYTCEDDLQK EFEEHPYLRLFSDSKQTIFCSQSNFSEDQQRVVDIIAPIAIDNFDSAKRAKDLLVALNEI SCPEYFYVDSLLTNFCEVFQIPKMREFDRHYFLLILFKNIIYNQLFISQQPNTAILDFLV NKNSTYQKDLQKKIYAFYRNFSAHSPYQLRFKDQENPIWTCELLLRIYKHYSPRKKIKIG VAYSRDFYIASFIMMKIKQAFSEDIIFERTDFSSCDIVITDYPLFDLPKEIDRIYILEEE LTREDWELIFSKISIAIFDLQY >gi|308151732|gb|GL476290.1| GENE 38 36089 - 36931 724 280 aa, chain - ## HITS:1 COG:no KEGG:EF1925 NR:ns ## KEGG: EF1925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 280 1 280 281 466 99.0 1e-130 MAKQKNFYDTYDALFQKPKWSFFPVTRTDTAKQLPNPNKKVVKPQTKKKKKQKKNKKIIW IGIAVAIGFIVYIDLAEKDDYWDYSASSEDVYPLKEAGLTTTGPVDLEKPLKVTIEQNKL LFNQGYQIEIIGDADIETSGGKNFLILPSTEEYPDTKYLGNISFYEKRDYYTSAGMYLSG NLVNSLSDYLDTSKEFIKAYPIDKIADVQTGYILKRNQGYTDISKYYLFKDGTGFELEVS VDQLEKVKDPKDYSSFVKTYAKEVAFIEKSFKFESTDEES >gi|308151732|gb|GL476290.1| GENE 39 36924 - 37463 415 179 aa, chain - ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 29 162 63 195 208 74 29.0 1e-13 MNGIMVLLVGAGYIGWVIYRNGRTYFRYKKNLKKYQTTHHLTDSDLEMYQRIMDELKKQI IYLNELTNKSRNLKKIEQVELGVASAKGIFKHLVKYPEAITHFSDFLYHKVPEILRASER FLSIKEDKLSTEEITLATNGILSTIRVLSESITDDYEKLVSEASEEISLSKKLVERKNG >gi|308151732|gb|GL476290.1| GENE 40 37736 - 38455 1190 239 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 3 235 4 236 272 258 59.0 6e-69 MGTSMMTQLFGEFFGTMILVLLGDGVCAAVNLKKSKAFASGWVVIALGWGAAVTLAVYMS GYMSPAHLNPAVTVAMAITGNFEWGMVLPYIVAQVLGGFIGGLVVWLAYLPHWNITEDKG AILGTFATGPAVRNYPANVLTEIIGTFVLVFGLLAFSQNDLAAGINPMLVGILVLGLGLS LGGPTGYAINPARDLGPRLAHQIIPVKTKGDSDWAYSWVPIVGPILGASLAAVIYLFTI >gi|308151732|gb|GL476290.1| GENE 41 38463 - 40292 2218 609 aa, chain - ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 744 63.0 0 MTFSIETRRQSIDALKTQHLDVLIIGGGITGAGVALQASAAKMKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVEVVADTVKERAVVQSIAPHIPKADPMLLPIYDEPNATFNLFSV KIAMDLYDQLADVTGTKYANYLLTKDEVLAREPQLKSEGLQGGGVYLDYRNNDARLVIEN IKQAVADGAHAVSRVQAVGFLYNDEGKITGIQAKDLLTDEQFEIHADVLINTTGPWSDKL RGLDKNDSFTPQMRPTKGVHLVVDKSRLNVPQPTYFDTGKQDGRMVFVVPREEKTYFGTT DTDYHGDFQHPTVEQSDVDYLLEVVNNRYPEVQLTIDDIEASWAGLRPLISANGGSDYNG GNNGKLSDKSIDEVIDVVDRYQKNQTDKREIEEVLNHLEDSLVENKVNPSAVSRGSSLER SADGLLTLAGGKLTDYRKMAEGAMKMIQTILAEEYQKEFTLIDSKNYPVSGGKLNPATVD EELEALAKHGVSKGLSEKDALYLAHLYGSNVPTVFEMIDDAKVIPGLTLTETVSLNYAME EEMALTPVDFLLRRTNHLLFMRDRLDQVKAGVIEEMAQHYQWTAEERARHIETLEKVIEE SDLKNLKVG >gi|308151732|gb|GL476290.1| GENE 42 40313 - 41818 1823 501 aa, chain - ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 498 498 789 77.0 0 MAEEKYIMAIDQGTTSSRAIIFDKKGNKIGSSQKEFTQYFPNAGWVEHNANEIWNSVQSV IAGSLIESGVKPTDIAGIGITNQRETTVVWDKATGLPIYNAIVWQSRQTTPIADQLKEDG YSEMIHEKTGLIIDAYFSATKVRWILDHVEGAQERAENGELMFGTIDTWLVWKLTGDTHV TDYSNASRTMLFNIHDLDWDQEILDLLNIPRVMLPKVVSNSEVYGLTKNYHFYGSEVPIA GMAGDQQAALFGQMAFEPGMVKNTYGTGSFIVMNTGEEPQLSKNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGLKMLQTAAESEAVAKASTGHNEVYVVPAFTGLGAPYWDSQA RGAVFGLTRGTTREDFVKATLQAVAYQVRDIIDTMKEDTGIDIPVLKVDGGAANNDFLMQ FQADILNTAVQRAHNLETTALGAAFLAGLAVGFWKDLEEIKAFQEEGQQFEPIMAEEERE DLYEGWQQAVAATQQFKRKNK >gi|308151732|gb|GL476290.1| GENE 43 42095 - 43561 1170 488 aa, chain - ## HITS:1 COG:no KEGG:EF1931 NR:ns ## KEGG: EF1931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 488 1 488 488 870 99.0 0 MKVETLLEKKAMRQLLTVQQTILAGGTCSVSDLTAFLAVTKASFEKDLEDLHYFLKPFGQ DCQLTYDGQQLSITLSDFFSLNHLIEAFVKESLKFQLLDYLYRNKEFSIVQLTTKFMISE SSLFRKIKELNQLLAAFELQIKNGQLQGEELQIRYFYFQLYWYITPYEIHQKKTMSPLNK RIIEGIETGLGFTFNEHNALKVSLWLSITKKRLAVTSKKYQQLRKKMIDFKEDPLFKQVR QLFFRFSSRYSLELDEGESMIHFVFLITMSVLPESAFDEYSLIRGRRSAVSLADTFILEN VVLYYRPHKFEPTLEKTMAYYFSQIHGKLYFFKGELEVFDRAHIWEKEQQLSSRELASFS TTLLEKALACFDETYQPGDSLHELSLVKYLSVLTLIEFKMIGEIKIGIHLAMDALYQAAL TQVLMLSLKNMNGTLVERYQPEQTYDLIVTNYQQTSYQGTPEVYVLSELSSTYDVQQLKK KIRTLREK >gi|308151732|gb|GL476290.1| GENE 44 43551 - 44885 1321 444 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 436 1 442 454 166 27.0 1e-40 MKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARY ITEEELRRQKIQLLLNREVVAMDVENQLIAWARKEEQQWYSYDKLILATGASQFSTQIRG SQTEKLLKYKFLSGALAAVPLLEKSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQKISCDSGIFALNL HPQLAYLDKKIQRNLDQTIAVDSYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASVIVRQPAPP LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQP SLTNIYDITNLMGASAYWRENDES >gi|308151732|gb|GL476290.1| GENE 45 45065 - 45421 451 118 aa, chain + ## HITS:1 COG:no KEGG:EF1933 NR:ns ## KEGG: EF1933 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 1e-45 MSATKEQLELFLFYLSETHTKSLSLHDLVTSRPRPEEARILLNINEVFTYYHSARVLYTS VPALENNKSEPFFQAFENFYFELKQHFFNEEDETNQLNERLEEMKIAFEQLTDDYNVL >gi|308151732|gb|GL476290.1| GENE 46 45455 - 45616 218 53 aa, chain + ## HITS:1 COG:no KEGG:EF1934 NR:ns ## KEGG: EF1934 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 67 98.0 2e-10 MKQEEVIERLKEELNLPFFNGTLEEKNYSEADYQQIKKELIQYFDDYVRNVEN >gi|308151732|gb|GL476290.1| GENE 47 45859 - 46299 679 146 aa, chain - ## HITS:1 COG:no KEGG:EF1936 NR:ns ## KEGG: EF1936 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 146 1 144 144 260 98.0 2e-68 MVMRPNLGFYVQTINDIVKTTEDIGEVMNPYYEEVRQAIDKNKVNDLTAERIAEIQAKFK EGTEKYELMLKKVGTLKPTPQVLGIHKKFQHAYTEYVAGCNEMILATDPETGIDAELFNA SEEKQDQATDELTFAITRMSNILLKK >gi|308151732|gb|GL476290.1| GENE 48 46369 - 46905 167 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|83643376|ref|YP_431811.1| acetyltransferase [Hahella chejuensis KCTC 2396] # 1 144 6 149 175 68 32 1e-10 MKRKIIFETQRLIVREWQSEDEVELKKFLQDENVMYAYEHAFSDEEVANWLKWNLQSYQE YGYGLWALEKKRTGEVIGECGLTNQLVKGKSYPEIGYHLCVKEWHKGYAIEAAAAAKQYA FDVLNFPEVISTIRDTNLASMNVAIRNQMLVRDRYIKTYRGKTMPHYVFSVKNQKNED >gi|308151732|gb|GL476290.1| GENE 49 46975 - 49680 3503 901 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 6 899 3 888 893 1126 66.0 0 MSEEKKTQLSEAFYAQDDTVVLEKMNTTTDGLSAQEAQKRLETYGENVLDEGKKKSLAVK FFEQFKDFMIIVLLAAAVISAVFSHDVVDSIIILVVVILNAIFGVIQEAKAEQAIEALKE MSSPNANVRRDGHVITVKSDELVPGDIVLLEAGDVVPADLRLLEANSLKIEEAALTGESV PVEKEVTILEGTDIGIGDRINMAYSNSNVTYGRGLGVVVGTGMNTEVGKIAGMLASEQET ETPLKQNLNQLGKMLTIAILVIAAVMFVVGMMNGRSWIDMLLTSISLAIAAIPEGLPAIV TIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLTLNQMTVEALYTDGQVLSA STEIPADNMALKIMNFTNDTKIAQDGSLIGDPTETALVQFGLDHAFNVTEKVAAEPRVAE IPFDSDRKLMTTVHELKTGGFLVSVKGAPDELLKRCTEILSNGETSPLDETKRQEILKTN TSLAKQALRVLGMAYKYVETIPAEMSSELVEKDLTFAGLVGMIDPERKEAADAVKVAKEA GIRPIMITGDHRDTAEAIAARLGIIKEGDDDAVITGAELNELSDEKFAQVVGHYSVYARV SPEHKVRIVKAWQQEGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADD NFSTIIVAVEEGRKVFSNIQKTIQYLLSANLGEVLTLFIATMLNWDTLLPVHLLWINLVT DTFPAIALGVEPAERDVMSHEPRGKKSNFFSGGVLSSVVYQGITQGALTLIVYKMSIMFP AHTAANTNLSAQALYDLQHGDALTMAFATLGLIQLFHAFNVKSIYQSIFKVGLFRNKSFN YGILVSFLLLAATIVIPGFNDLFSVTHLDAYQWAIVAGTSFAIIPIVEIVKFFQRKAGKG A >gi|308151732|gb|GL476290.1| GENE 50 49998 - 50648 612 216 aa, chain - ## HITS:1 COG:no KEGG:EF1939 NR:ns ## KEGG: EF1939 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 216 1 216 216 354 99.0 2e-96 MWKKKIVLSFLFYLISALGISLTIQAGIGVSSFNAFNVTFATLTHLKVGTVTTAINLAFL GTCWLLDQQRKIQDYLIILVALIGFGFVINFFLYQLFGSLVFQNYLVKIVLFILGTIIAG IGTGQVVALGVLQFPIEKFCTLISERTRYSFQFYRYLVDIFCVSLALGLSISYHLPIFVR EGTVISLFLLSWVISWSRKRGQQRILRIQIKKLESE >gi|308151732|gb|GL476290.1| GENE 51 50737 - 51402 616 221 aa, chain + ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 22 219 2 208 219 120 34.0 2e-27 MLKTAYQQSPKQELAKNTPFFNETDLKHSFIIDFENQEFIHHQAEPLNYLFYLIKGKAKI LKTERNGRQSIVQFLTTGDLIGDLTLVQAETIPKDVIALGETCCLAIPLAYAETVLKNKV LFMQQLSHYLGKKMLQRVDHFTTNQTYELSYRLAELLLVAANHEDVYKEKHTEIAEYLGV SYRHLIYTFKQFRERGFIQKQGTAYHINRLALHSFVQKMKS >gi|308151732|gb|GL476290.1| GENE 52 51474 - 51869 536 131 aa, chain + ## HITS:1 COG:no KEGG:EF1941 NR:ns ## KEGG: EF1941 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 233 98.0 3e-60 MEQASFTVSSWQEQPIDNLNENFPVNQASATYQLSGALSGTASVEYLMTYQGSSMADGLE AVAQVVDFLHFEGTYLGKKGTFTACEKGTFTQGLLDCPGELFQASGELAGLSGRYTYEFS QEEALLHLDFV >gi|308151732|gb|GL476290.1| GENE 53 51979 - 53160 1135 393 aa, chain + ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 381 3 386 396 268 43.0 1e-71 MKNTRNTVPSLLIIILLVGFPQISESIFTPILPALSSAFNIHDSVAQLTMSIYFVAFAVG VLFWGILSDTIGRRPAMLLGILCYLIGNIGLFLSPTFPWLLFFRLIQAFGASVGSVITQS MMRESFNDLQRGKIFAQTSAALSLSPAIGPLVGGLVQTYFGYQHVFSTLIVMAVLLLFYS FYRLPETFHLGNTLTKAPFWSVAKRLSFDSKVWCYGLLIGGINGLLFSYYAEAPFIFINH FGFSSVQYGFLGLVLAVSSILAAVLINWLLGYWSAEKIAFAGLLLSIFAACCLLIMTQFE SIIGLILFIFLFFLGINITLPNALSMALKGYESVIGTASGIFSFVYYLFVSFFTYLISYF HNGTIWVLPLYFLSFACLLAFSYYVIVYRKTLK >gi|308151732|gb|GL476290.1| GENE 54 53197 - 55032 1564 611 aa, chain - ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 9 609 39 641 653 194 27.0 5e-49 MKKRVEKFRRWPYRYLLYGIGFILLIIFSNLYLQWCQNNLSVDLAFKFAFSWHTEKFFLG CFVLSVFLLFLCSLAGSLGVGALLYSVIIGVLGFADYQKMFYRVEPIYPDDLKMITEVSL LKEMVGLWPFIFVVALGCVALFFLGKAFYKSFFLSKKKQTIRVLSLVLSIGLFSYIGDFN NPQNLLRKAYNKTALWIPYSQKMNYYNTGFIGGFLYNLKVEAMDQPKGYSKEAISEITQK YQKLAEAKTVPSNEQPNIVFVMSESFSNPDHLKGLSIIGNPLADYQQIADKTYSGQMLSQ NYGGGTANIEFEALTSFSMELMNAQMTTPYTMMIPKMTELPSIVSLLKEQKYQTTAIHPY NTSMYKRKDVYKILGFDQFINEKTMNYTDKLENNPYISDQAAYQEVTTLLKEKEQPQFIH LVTMQTHMPYENKYTTSNYFSQGNGNQVALNNYLQDIAYSSEALKNFLQEIEKMPKRTLV VFWGDHLPSIYDENIQALNEGAALHQTEFLMYDTANQLTEKNQHQATISPFYFAPSLFQQ SGLPQSGFYAMLNEVQEQLPAFEKGNYYLGGEWKKTVEMNKKQEQLYEEYRLIQYDIVSG KQYSLENQFFS >gi|308151732|gb|GL476290.1| GENE 55 55137 - 55238 95 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFVAKIIFQWYSNNGISLSVIVAFLEYFMKGE >gi|308151732|gb|GL476290.1| GENE 56 55241 - 55390 266 49 aa, chain + ## HITS:1 COG:no KEGG:EF1947 NR:ns ## KEGG: EF1947 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 79 100.0 4e-14 MTYKVKNIQYRIQLDTDKNIFIVFDAKNESKTATGHTIEEAIAHLKQLN >gi|308151732|gb|GL476290.1| GENE 57 55541 - 55900 334 119 aa, chain + ## HITS:1 COG:lin0899 KEGG:ns NR:ns ## COG: lin0899 COG5646 # Protein_GI_number: 16799972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 110 8 116 130 101 49.0 3e-22 MTIIANYIRQQPQHQTQLTEIYQAILAVVPQETTEKIAYGMPTFYLNGNLVHFAAAKQHL GFYPTPSAIQRFSKELRPFKTSKGAIQFPYTQELPLSLIQEIVKFRVQENMKSVGQKSL >gi|308151732|gb|GL476290.1| GENE 58 56100 - 56450 426 116 aa, chain - ## HITS:1 COG:lin0147 KEGG:ns NR:ns ## COG: lin0147 COG4898 # Protein_GI_number: 16799224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 115 1 115 116 160 73.0 4e-40 MTKPKIYTMTFASVYPLYIQKAERKNRTQAEVDEIIYWLTGYDEKGLQQQLAQKVTMETF FEEAPNFNENAQLIKGVICGYRVEEIEDPLMQKIRYLDKLIDELAKGKAMEKILRT >gi|308151732|gb|GL476290.1| GENE 59 56524 - 57528 1249 334 aa, chain - ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 334 1 331 331 407 56.0 1e-113 MLKFNEEQQIKDIRGALALRSDVEKVVDQVWTKGFDAVYYLGIGGTYASAMQAVTYANGK SNLPIYVQHAAEYYTTGNKRLTEKSFVILSSVTGTTQEVVQAVQEIKKVGATLFGFIDAK DSLLADLCDYVVTYPAPGTEQIKFFMVADRLMQKNNEFTDYENYYQELEEYLPTGLAEAE KSADAFGLAFAEKHRHDSIHYFIGAGNQWGAVYSYAMCYWEEQSWLRSKSIHAAEFLHGT LEIVDETTPVTLFIGEDEQRPLAERVAKLLPKICANYTIIDSKAYELPGISEKYRGRVIS FLLMHAVTQRIDAHVEKLNCHPLEIRRYYRQFDY >gi|308151732|gb|GL476290.1| GENE 60 57522 - 58598 903 358 aa, chain - ## HITS:1 COG:lin0034 KEGG:ns NR:ns ## COG: lin0034 COG0449 # Protein_GI_number: 16799113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 3 348 4 354 361 299 45.0 7e-81 MKTMLDYINEEQAALTQILNQFQLTDTDVSKVTHCLILATGSSHNACQAAKVYLEEVAPI YVEIQEPFNFAHYGKVDDRFDLVVAVSQSGKSASTIDAIAKIKNQTSVKTVALTSDVTSP ITEVVDEVLDLKMGLETVGFVTKGYTATLLNLFLFGLKLGYQKHQLTKVEVGEELAKLAK AIQEIDSVIYKTEQFWQKTKKELIEGTRFIAIGYGPNIGTAKEFETKFTETVRLPSQGFE VEAYMHGPYLEADTTHLLFFIENQSPIQARSQALKNYLANYVGQCYTITTRSTRASNTLE LASDVEEKISPLLLVIPFQYLAYQVATSKGIDLSQRIFDDFDCVLKSKIAKKEGNQPC >gi|308151732|gb|GL476290.1| GENE 61 58609 - 59439 928 276 aa, chain - ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 6 276 9 278 278 377 69.0 1e-104 MTKTSKTKTENLITKKELNQVFWRSFQMEFSWNYERQMNMAYVYAMIPILKKLYPQKEEM AAALKRHLAFFNTTPHIVTFILGINAAMEEENVLDENFEVGTIDSIKTSLMGPLAGLGDS FFWGTLRLIATGVGTSLALQGNVLGPILFLLIFNVPHVIVRYLLNRWGYKLGTGFLKKIQ ANGMMESLTLGASIIGLMVVGAMTASMIDLTIPITISGSGKNAVTVQSIFDDIMPKLLPL ASFGFVFYLLKKEVKPLAILGGMAIVGILGSLIGLF >gi|308151732|gb|GL476290.1| GENE 62 59423 - 60214 891 263 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 4 263 3 259 259 311 71.0 7e-85 MIGQAILLGCIAFIAQSEYALGTSLLSRPIVTGLFVGIVLGDVKTGVIMGATLELAFIGS FSVGASIPPDVVTGGILGTAFAITAGAGTETALVLGLPIATLTLILKNIYLGLLIPIMSQ KADQYAEEGAYKGVERMHLLAGFGLSFMLALIVTISFAVGSNTIKGLLDLIPEFIQHGLS VATGIIPALGFAMLARLLINKQVAPYFFLGFVLMAYFKLPVTGVAILGAITAVIVVNIMN YAKGKNETIQTTSGEVIDDDEDF >gi|308151732|gb|GL476290.1| GENE 63 60230 - 60700 587 156 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 206 71.0 1e-53 MIKLLRVDHRLLHGQVAFSWTQGLGADCILIANDDVPKNDIRKTTIKLAKPAGVKLVIKT IEDAIAALKSGVTEKYKLFIVVESVEDAYRLATAYPEIKEINLGGMKVRENTRNISKAIN ITPDEEKMVKELVANGCEVEIRQVPNDKKVAALNVL >gi|308151732|gb|GL476290.1| GENE 64 60712 - 61131 507 139 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 128 1 128 140 95 36.0 3e-20 MERKIILATHGNFAAGIQTSLALICGETKNVECLCAYMEQPYDLAKTVKDILKNNQQNEL IVITDLFGGSVNNEFFNYVGKQAMHLISGLNLATLIEIYTQINTVDSLVDLVKRAVENGQ ESLCYCNELSSKEILEEEF >gi|308151732|gb|GL476290.1| GENE 65 61203 - 63974 2314 923 aa, chain - ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 454 1 458 460 420 48.0 1e-117 MLKTQIVDYLRNQTAFFEPSLVSEIFTASNIATTFSIKRNTASHYLNQLNEEGILVKINT RPVYFFHKEAFQQQNYLLKRTVYQSFQEMIDEQPVFDRKSDFFQSVIGYRGSLAQTIEQL KMAALYPGGGLPVLITGESGTGKSFLASLYYQFCLSKELLDDSAPFVTVNCAQYANNPEL LTSQLFGHLKGAFTGADSDKIGAFQSAEGGVLFLDEVHRLSPEGQEKLFTFLDQGIIYRM GETNRPIPVTCRLCFATTEEISSTFLTTFLRRIPIQIKIPSLAERTQAERKQLIMRAFYE EQQAIQKAVTITPQVIQLLENHHYVGNVGELRNNIKIITARSFAANLDKRVIPITLHDLP KEFLDQSIKLAPDENGLPIRLDEQTNLVSLLEETELAQRRIIQSYERILRLYVSHHHHLS TANNDISKEIERLFDDLLFEKKREKNHEMLLFITQNIRQLLETIESSYQIRFNGSLVYAL STYLFQRRCIDWFPEKEPTTVIDELLTEVQTKLATSYGYAEQLLTLVKRSLDIELSQMDR IIVTIYLHYSGSVKESHYPKAVIVAHGYATASSIANVANRLLNVPIFQSFDMPLDVTPKK ISEHLIHYMERQETRNGLVILFDMGSLKEIYQYFPAEEEGPFLLMNNVTTSLALSIGEAI KDEVSFEELPQKALTVHPNEWEIILPENKTERVILTTCSTGIGTAVKIRDLLEKSLPAEA QLKIIPCEYNQLRNAESIKESFPEYEIVGIIGTNNPSSNDLPYISLEELIAGKGITTLLE WTKRELTKDMLSYVNHELIRNFSLDRVIQSVTILDTEKIIRQVEVFLIQLEERWQQTIQN DRKLAVYVHVSCLIERLIRNEPIENYNGAEQLKQCQRTVLQELKEAFSVIEKVYSVNIPE SELFYVYDVLFGKTEFNNAESDF >gi|308151732|gb|GL476290.1| GENE 66 64545 - 65906 1169 453 aa, chain - ## HITS:1 COG:lin2806 KEGG:ns NR:ns ## COG: lin2806 COG0232 # Protein_GI_number: 16801867 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Listeria innocua # 3 451 1 461 465 279 36.0 1e-74 MKMNWRQLVGTYRISDNGKQYQNDWLNKQVDLATELRKSFDSDYRRVIKSDAFRRLQDKT QVFPLERNDFVRTRLTHSLEVAMHSRDILRLVISQLNERNIEVMELSECYRLLETAALIH DIGNPPFGHFGEEAIRIWFEKNGPLYACWSDFSEQQQNDFLNFEGNAQTIRLLTKLHHDN GTSKAGMKLTATTLATVIKYTASSDQLNKQQLLSKKVGYFYSEKQVFNAIKFATGTQNKR HPLVFLLEASDDIAYTFSDIEDAYNYGLYSYQDLKQFVDGQTGTKKFLMLEKDKTEEATL QEFLRKTQRAVCQSVAKNFANHYDLIMRGIYHNEIIIEDCDEVKCFQALKNFSRVYVFQT KTILDQEVLGFNIINRLLDEFVPVVLKYEKVSMNKYEERIFNNISESAKALYRREAKNAT EAEKDYYRLKMAVDFVCNMTDGYAKKVYDTLFT >gi|308151732|gb|GL476290.1| GENE 67 65923 - 66747 631 274 aa, chain - ## HITS:1 COG:no KEGG:EF1959 NR:ns ## KEGG: EF1959 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 274 546 100.0 1e-154 MSNGKKIFISHSSKDQEYVDAFIQLLKKFGFRTQDIFYSSTIETGVQPGELIFDTIKREL TNQPVMLYFLSDHYYQSIPCLNEMGASWMLSDKHYPIALNNFSMKDMKGVISSERLAIAF NDKTSTNEINCLLKKLSHDTDVQAEPDFELNVEKNIQPFQNKLTQLIRQASYLKPDEKGY FETILSTHRPVYGTAKGVYDCFKLPSLIEPKSLGLDTLSEDESHWLFFFLTWGTFQEGEK VRFKLKKDKAYNNREFSDIGKCKNIYVSYLEKVE >gi|308151732|gb|GL476290.1| GENE 68 67136 - 68434 1761 432 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 433 434 667 82.0 0 MSIITDIYAREVLDSRGNPTIEVEVYTESGAFGRGMVPSGASTGEYEAVELRDGDKARYL GKGVTKAVDNVNNIIAEAIIGYDVRDQMAIDKAMIDLDGTPNKGKLGANAILGVSIAVAR AAADYLEVPLYHYLGGFNTKVLPTPMMNIINGGSHADNSIDFQEFMIMPVGAPTFKEALR MGAEVFHALASILKGRGLATSVGDEGGFAPNLGSNEEGFEVIIEAIEKAGYVPGKDVVLA MDAASSEFYDKEKGVYVLADSGEGEKTTEEMIAFYEELVSKYPIISIEDGLDENDWDGFK KLTEVLGDKVQLVGDDLFVTNTTKLAEGIEKGIANSILIKVNQIGTLTETFEAIEMAKEA GYTAVVSHRSGETEDSTISDIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGDVAEY KGLKSFYNLKNK >gi|308151732|gb|GL476290.1| GENE 69 68566 - 69321 879 251 aa, chain - ## HITS:1 COG:L0006 KEGG:ns NR:ns ## COG: L0006 COG0149 # Protein_GI_number: 15673116 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Lactococcus lactis # 2 251 3 252 252 385 80.0 1e-107 MRKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVK LAAQNCYWENAGAFTGENSPAAIADLGVNYVIIGHSERREYFHETDEDINKKAKAIFANG MTPIFCCGETLETYEAGKTAEWIEGQITNGLVGLSNEQVASMVIAYEPIWAIGTGKSADA NIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEA DSFLALLDAVK >gi|308151732|gb|GL476290.1| GENE 70 69370 - 70563 1491 397 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 397 1 396 396 592 79.0 1e-169 MAKKTIKDVDLKDKKVLVRVDFNVPLKDGVITNDNRIVAALPTIKYVIENGGKAILFSHL GRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRF EDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKE IKFIGEAVENPKRPFVAILGGAKVSDKIAVIENLIEKADKILIGGGMAYTFMKAQGYSVG LSLLEEDKVDLAKSLMEKAGDKLVLPVDTVVSKEFSNDAPFHTVPSTEIPDDEEGLDIGE KTIELFANELQGAKTVVWNGPMGVFEMSNFAKGTIGVCEAIANLEDATTIIGGGDSAAAA IQLGYENKFSHISTGGGASLELLEGKTLPGLASINDK >gi|308151732|gb|GL476290.1| GENE 71 70690 - 71691 1403 333 aa, chain - ## HITS:1 COG:lin2553 KEGG:ns NR:ns ## COG: lin2553 COG0057 # Protein_GI_number: 16801615 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Listeria innocua # 1 333 1 334 336 549 83.0 1e-156 MTVKVGINGFGRIGRLAFRRIQDVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFNGTVEV HEGSFNVNGKEIKVLANRNPEELPWGELGVDIVLECTGFFTSKEAAEKHLTAGAKRVVIS APGGNDVPTIVYNTNHETLTGEETVISGASCTTNCLAPMAKALHDNFGVVEGLMTTIHAY TGDQMTLDGPHPKGDFRRARAAAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVATG SLTELVTVLDKEVTVDEVNAVMEKAANESYGYNTDEIVSSDIVGMTYGSLFDATQTKVMT VGDKQLVKTVAWYDNEMSYTAQLVRTLEYFANL >gi|308151732|gb|GL476290.1| GENE 72 71731 - 72768 1006 345 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 13 342 13 342 348 325 50.0 8e-89 MLKEFKMIEAVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQ LNLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDSDIQ KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGI GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVV HSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEI PYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILKGVTL >gi|308151732|gb|GL476290.1| GENE 73 73188 - 74066 916 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 3 290 25 312 313 320 52.0 1e-87 MKKIYDGLPVHDYTTKFSVSIVYAILASIAMNFFYQPGNIYSSGLTGLAQILTTLSTKIV GFNVPVSITLYLLNVPLFFIAWKKIGKKFTIFTFITVTLTSLFMHIVPQTVMTQDPIICA IFGGAISGSGIGFVLKNGVSSGGLDILSITIRKKTGRSVGSISIYFNALIVFVAGYLFGW QYMFYSALSIFVSGKVTDAVYTKQKKMQVMIVTKNPDRVVDEIQKKMRRGITIIHEAEGA YHHDRQTVLLTIVTRFELPSLEAAMKESDPNAFVSISDNVKILGRFYEEDYK >gi|308151732|gb|GL476290.1| GENE 74 74209 - 74778 798 189 aa, chain - ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 182 1 180 180 205 61.0 5e-53 MTIDEKMLKEQLVTITEEVITAGNLKKGDLFVLGCTTSEVVGGVIGKNSSAEVGQWIVST LIEQLDKKGISLAVQGCEHINRALAMERRVAEEKGFEIVSVVPQLHAGGSCSVAAFEKFD EPVEVEHIVAQAGIDIGDTSIGMHVKHVQVPLRLSIRTLGAAHVTALYSRPKYIGGPRAH YETTQERNR >gi|308151732|gb|GL476290.1| GENE 75 74775 - 75281 652 168 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 2 154 6 152 153 105 43.0 5e-23 MTRKISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSG GLIDLLSGYPQWFVFSLLIHGGQGWLAGHFFNKNKKMQTLGLLLASLLMISGYALATSWL YGVGAGIASLPGNIIQSLFGVIVALPLSQTLKRVLPKNGRLEERRMNK >gi|308151732|gb|GL476290.1| GENE 76 75265 - 76080 776 271 aa, chain - ## HITS:1 COG:L0202 KEGG:ns NR:ns ## COG: L0202 COG0351 # Protein_GI_number: 15672469 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 2 241 8 249 262 182 40.0 5e-46 MTKIILTIGGSDPFSGGGIQTDLKTFENHQVFGLLTLTCLATAPKNHFQIHDMETSLVKE QLASIPAGSLDGIKIGLIHSEESMLQIATFLKKHAGLPVVLDPVLAFKETTSVYEKRYMQ LLIEKLFPFATIITPNLKEAELLIGRKLTTVEEVQQAAEELNSLGAATVVIKGGNRWLGQ EARDFFYDGQQHIQLVKEKVMAHTIDGAGCSFASAIGANLVKGYPLIEAVDLAKTYVHEA IVSGVQLNAAFGSVWHEGLLAGGVADNDKKN >gi|308151732|gb|GL476290.1| GENE 77 76255 - 78024 2315 589 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 583 1 584 591 801 67.0 0 MAKRTTYCGNVSAEFIEKEVVLKGWVQKRRDLGGVIFIDLRDREGIVQVVFNPEKSKEAW EIADKCRSENVIEVKGQVVYRDKEAINPKMKTGEFEVMATDITILNTAKTTPFTIEDDNN VNDELRMKYRYLDLRRPSMTNNIKLRHQVTKTIRHYLDNHDFLDIETPYLGKSTPEGARD YLVPSRVHAGHFYALPQSPQLFKQLLMGAGFDRYYQIVRCFRDEDLRGDRQPEFTQIDIE TTFLTPEEIQTYTENMLAEVMKETKGIEISVPFPRMSYDEAMARYGSDKPDTRFAMELID VADVVKDVDFKVFQAALENGGHVKALNAKGAADKYSRKDMDNLGKYVSQFGAKGLAWLKV EEDGLKGPIAKFLTEVSDELIAATNAEVGDILMFGADKPEIVAAALGAVRTRLGKELGLI DESKFNFLWIVDWPLFEYDEEAGRYVSAHHPFTQPKAEDVARLATDPASVYAEAYDVVLN GYELGGGSLRIHTRELQEKMFETLGFTKEEAQDQFGFLLDALDYGFPPHGGIALGLDRLA MLLAGEENIREVIAFPKNGKAIDPMNNAPSLVSPLQLFELNIDVTAIDE >gi|308151732|gb|GL476290.1| GENE 78 78042 - 79343 1669 433 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 554 64.0 1e-157 MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI VSKEMYDFYDKGDRHVTLRPEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQA GRLRQFHQIGVEAFGSENPALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQA LIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAV TDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGP DTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNITALQLVQSIRNFGFSA DRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAIHDSFD EVYDEMMTKMIEE >gi|308151732|gb|GL476290.1| GENE 79 79701 - 80147 553 148 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 145 147 174 60.0 6e-44 MKVVIQRVSQAQVAIEEQIVGQIKQGFMVLVGIHQEDTPEDVAYVVGKISKLRVFEDDEG KMNRSIQEIEGSILSISQFTLYAKTKKGNRPSFIEAARPDVSIPLYELFNQQLEAEGIAV ATGEFGADMQVSLTNDGPVTIVIDTREK >gi|308151732|gb|GL476290.1| GENE 80 80171 - 82384 2617 737 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 734 1 735 738 981 66.0 0 MPKEEILTGPAVIKIVSTYMGPEHVELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGI LAELHMDPHTVATGFLHDVVEDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIKYKSHEEQL AENHRKMLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGI SRIKWELEDTALRYINPNQYYRIVNLMQSKRDEREAYVAEAVEDIRLATEDLEIYAEIYG RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVDSIKDCYAVLGAIHTRWTPMPGRFKDYI AMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKEGKAEKIETDELT KQVDWFHEIIELQDESYDASEFMQGVKEDIFSDKVYVFTPSGDVTELPKGSGPLDFAYSI HTEIGNKTTGAKVNGKMVQLDYVLKNGDIIEVLTSPNSFGPSRDWLKMVKTSKAKNKIKR FFKEQDREDNIIKGHDAVIKYMTEIGFTPKEFLTKNKMAEVLDKFKFQTEDDLFAAVGYG EVSAQVVCNRLTEKERREQELERQRQEAEELLNQPAKKESEKMKVRHEGGIVIQGVDNLL IRLSRCCNPVPGDEIVGYITKGRGVSIHRADCPNVQHQEELAQRLIEVEWEDTEHSRKEY AADLEIYGYDRSGLLSDVLQVISSMTKNLVGVEARPSKDKMAQIHVTVKIQNLSHLKTIV DKIKSVPDVYSVRRTNG >gi|308151732|gb|GL476290.1| GENE 81 82599 - 83351 754 250 aa, chain - ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 249 255 235 49.0 7e-62 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAPLYLLS AVSYQMELLN >gi|308151732|gb|GL476290.1| GENE 82 83353 - 84300 1600 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis TX0104] # 1 315 1 315 315 620 100 1e-177 MKWTEVKVETASEAVEAISNIMMEAGASGVAIEDALDIENFESDLYGEILDKEQFTHIKE GAIVMAYFPETTFLPEILPFMKENILRLPEYGLSIGKNEMTISEVAESDWATAWKKYYHP VRVTRFLTIVPSWEAYHAQDEAEKIITLDPGMAFGTGTHPTTRLTLQALETVLRGGETVL DVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSANDLLKGIDH SADVIVANILADIIVLMIEDAWRLLKQDGTFIISGIIEDKKAMVLEALTKVGFVVDQLFN QGDWYAIILKKPEEE >gi|308151732|gb|GL476290.1| GENE 83 84316 - 84801 682 161 aa, chain - ## HITS:1 COG:no KEGG:EF1977 NR:ns ## KEGG: EF1977 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 282 100.0 3e-75 MKKATMLTYLEEQLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTLSEE EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLL DFLSDETAEVFELHWEPADFEAMIKKVAETEKEQWIAYPSY >gi|308151732|gb|GL476290.1| GENE 84 84758 - 85435 721 225 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 8 198 3 192 202 186 46.0 2e-47 MKETINIFNTKTTEEVAQYLLGMYLEHETATGVLGGYIVDAEAYLGPDDEAAHSFGLRKT PRLQAMYDKPGTIYLYTMHTHLILNMVTQEQGKPQGVMIRAIEPVEGVDKMIENRQGRQG VELTNGPGKLVAALGIDKQLYGQSIFSSSLRLVPEKRKFPKKIEALPRIGIPNKGRWTEL PLRYVVAGNPYISKQKRTAVDQIDFGWKDEENEKSNNAHILRGTT >gi|308151732|gb|GL476290.1| GENE 85 85564 - 86841 1568 425 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 425 4 426 427 595 69.0 1e-170 MQQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLSSMILYGPPGTGKTSIASAIA GSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI IMIGATTENPYITINPAIRSRTQIFEVKPLTETDIQQAIQEALTDSTRGLGDYPVHLEEK ALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIEECVQRKALTHDKDGDAH YDVISAFQKSIRGSDVDAALHYLGRLVEAGDLPIICRRLMVIAYEDIGLGNPAAAARTVT AVQAAEKLGFPEARIPLASVVIDLCLSPKSNSAVTAIDAALADIRQGSVGDVPDHLRDAH YAGAKELNRGIGYQYPHNFENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQE WKQKK >gi|308151732|gb|GL476290.1| GENE 86 86925 - 87128 86 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYALSFHCVDRTFLLISRDPACIKVGNMPFLLVVQYCDRGTHLLILRVQYSRTITGIDGF YHFYVDF >gi|308151732|gb|GL476290.1| GENE 87 87169 - 87447 277 92 aa, chain + ## HITS:1 COG:no KEGG:EF1980 NR:ns ## KEGG: EF1980 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 19 110 110 114 100.0 2e-24 MIRILVLLLAVVTGVASYYLMKKSAAFLPLLKKETATESQQFIERFGRYYLIIAILGVLA AIFNRPLLSIGFIFFVLLLSTLFSLTFAKKMS >gi|308151732|gb|GL476290.1| GENE 88 87625 - 88098 667 157 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 57.0 4e-40 MLQQYQKIMIAIDGSDEADLAFKKAVNVAKRNDAELLLAHVVDTRSFQSVSSFDGALAEE AMSMAKETLDTYQQQAVDMGQTKVSSVLAYGSPKNIIAKELPKEYNIDLIMLGATGLNAV ERLFIGSVSESVIRNASCDVLVVRTDLDNKLPKNEEK >gi|308151732|gb|GL476290.1| GENE 89 88210 - 89397 1500 395 aa, chain - ## HITS:1 COG:SPy0109 KEGG:ns NR:ns ## COG: SPy0109 COG0282 # Protein_GI_number: 15674332 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 395 398 507 65.0 1e-143 MSKTIAINAGSSSLKWQLYQMPNEEVIAKGIVERIGLKDSIFTIKYGEGQKYEVIVDIDN HEVAVKMLLDQLIDLNILGSYDEITGVGHRVVAGGEEFKDSVVITDEVLEKIEALSELAP LHNPANAMGIKAFKHILPEIISVAVFDTSFHTTMPEHNYLYSVPREYYEKFAARKYGAHG TSHRYVSQRAAEMLGRPIEDLKIITCHLGNGASITAVDGGKSVDTSMGFTPLAGVTMGTR SGDVDASLLPYLMTKLGLTDVQDMVDILNKKSGLLGLTNGLSSDMRDIQSNLDKPEVQTA YNIFIDRIRKYIGSYVTVMNGVDAIVFTAGIGENAVGVRKDIIDGMTWFGCEIDDDKNNV HGEEAVISTDDSKIKLLLVPTDEELMIARDVERLK >gi|308151732|gb|GL476290.1| GENE 90 89422 - 90393 1045 323 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 7 317 19 327 332 240 43.0 3e-63 MEQAIQLLQQSLDTSFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDL APEDVRRLSQLLLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTNKSEPLKILDPASGM GNLLLTVLLNLETAGYKVSGYGVDIDETLLAVSSVNNAWSQANIQLFHQDGLQDLLLDPV DLALSDLPIGYYPNDERAKGFAAAAEEGHSYAHHLLMEQAMKYVKPAGFGLFLIPTNILE TEQSEFFKNWLTKNVYLQGMIQLPDELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLAS LKDINKVTEFFKQFEAWKASNLK >gi|308151732|gb|GL476290.1| GENE 91 90558 - 90911 333 117 aa, chain - ## HITS:1 COG:no KEGG:EF1985 NR:ns ## KEGG: EF1985 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 165 98.0 5e-40 MRQKYSGNLLFTAMAFVYLMSFLALQLLEERQLTQKFTQATQEYYAGKSILHLFLADVKQ NRRKLKTEERLVYAQVTLDYTYKNEQLRITVLLNKSGRKYQYQERVSHQKKAETILE >gi|308151732|gb|GL476290.1| GENE 92 90911 - 91345 338 144 aa, chain - ## HITS:1 COG:lin1379 KEGG:ns NR:ns ## COG: lin1379 COG4940 # Protein_GI_number: 16800447 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Listeria innocua # 4 140 14 148 154 61 28.0 7e-10 MVNKKYAGFTMLECLVALVVLSCMCQLFQLMIQQSFIGNQYLKNNDSKSWHIFLIQLEKE CQKLVFQTGSAQEISFLDSETNKTISIQIKEDKIIKRVNGKGYQPLLIGIKNGQFKNEGQ SFTLEVTFTSGKTFDSFFPIKGEF >gi|308151732|gb|GL476290.1| GENE 93 91335 - 91661 216 108 aa, chain - ## HITS:1 COG:no KEGG:EF1987 NR:ns ## KEGG: EF1987 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 48 155 155 185 98.0 4e-46 MANIRRKLTIYSGFILLESLVSFSIVCVIAGIFSLTITQLIQQNYQREQELTRTRLGYEA ILFLEQTGDLRFKERIYQGETYRFSLMENEGRRILKVTDSRGAILIGQ >gi|308151732|gb|GL476290.1| GENE 94 92040 - 92165 185 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIIKHFMKPVEIFETLDDDIGMFLIISICTALIFTFFSK >gi|308151732|gb|GL476290.1| GENE 95 92463 - 93404 551 313 aa, chain - ## HITS:1 COG:STM0489 KEGG:ns NR:ns ## COG: STM0489 COG0276 # Protein_GI_number: 16763869 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Salmonella typhimurium LT2 # 3 302 5 307 320 273 43.0 5e-73 MKRTGILLVNLGTPKDSSKTEVRKYLKTFLSDRRVIKIHPIIWKPILNGIILNIRPKKSA KLYQKICTENGFPLLEYTEKQMENLKNICPEVEVTIGMSYSEPSIETALDTLLSKEIEEL NVIPMYPQYSGTTVGSVFDSVMNYFIKSDRIVDIKFIRSFYNNPQYIGYFSKKINEALNE SPIDAIVFSYHGIPMSYVKDGDNYPEECTKTTKLIMDKLGNIPYYQTYQSKFGPSEWLKP ATDDTLKKLPSKGIKNILIVAPGFVVDCLETIEELEHENRNYFLENGGEFYKYVHPFNGD IEFAKLVKDIISL >gi|308151732|gb|GL476290.1| GENE 96 94120 - 94365 141 81 aa, chain - ## HITS:1 COG:no KEGG:EF1990 NR:ns ## KEGG: EF1990 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 119 98.0 3e-26 MGFGKWKEVIPSDKSKQFEEGQKVSFIYRKEIRSGIIAVLLINSAVINIIDSSKPKNKKE KTVISYEKLLSMYQLKDLSLD >gi|308151732|gb|GL476290.1| GENE 97 94464 - 94664 317 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 95 80.0 2e-20 MNNGTVKWFNSDKGFGFITGEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQRGMQA VNIFKA >gi|308151732|gb|GL476290.1| GENE 98 95529 - 96770 1549 413 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 97 213 219 342 444 82 38.0 2e-15 MKKKLLATLLVVLFFVSPISTFAAKGDQGVDLSIWNGYQATFGYAHDKFSISQIGGQNNY GIYDQVTYSSQVASTIAQGKRAHTYVWWQNVLTYENAKQVLDYFLPKVQTPKGSIVALDA EDGVQSTDVTLWALDYIKEAGYTPMLYGYKGYLTSSYDLSRIAKKYQLWMAEYPDYEVTP YPNYNYFPSFENIGIFQFTSTYVAGGLDGNVDLTGITDNGYTKNNQPATNTPAIEEGKEV ENTPSSDVKVGDTVKVKFSVDAWATGEAIPDWVKGNSYIVQEVTESRVLLEGILSWISKG DIELLPDAATVPDKLPEATHVVQYGETLSSIAYQYGTNYQTLAALNGLTNPNLIYPGQIL KVNGLVVSNIYTVQYGDNLSSIAAKLGTTYQTLAALNGLANPNLIYPGQTLSY >gi|308151732|gb|GL476290.1| GENE 99 96771 - 97004 334 77 aa, chain - ## HITS:1 COG:lin1702 KEGG:ns NR:ns ## COG: lin1702 COG5546 # Protein_GI_number: 16800770 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Listeria innocua # 2 72 3 73 86 65 50.0 3e-11 MINWKSRIKNKQFWLSIIPAVLLLIQVVAVPFGYKFQIEMINKQLLDVVNALFVVLTILG IVTDPTTPGLSDRKGDK >gi|308151732|gb|GL476290.1| GENE 100 96997 - 97218 260 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227555456|ref|ZP_03985503.1| ## NR: gi|227555456|ref|ZP_03985503.1| hypothetical protein HMPREF0346_2619 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0641 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01578 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02966 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00550 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0346_2619 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0641 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02966 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01578 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_00550 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02185 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9497_01885 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9517_01930 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9507_01844 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_03115 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_01249 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2356 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 73 1 73 73 133 100.0 5e-30 MNLTVEQWLAVITFLGGIIFALMKFYHVFSQLEDSMKELKEAVERLNNHEIRISRLEEQN KTLFRGIGGNKND >gi|308151732|gb|GL476290.1| GENE 101 97253 - 97408 225 51 aa, chain - ## HITS:1 COG:no KEGG:EF1994 NR:ns ## KEGG: EF1994 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 51 1 51 51 97 100.0 2e-19 MKTNAFPGFDNIKQLYDWNCYTKQDLVDYVNMNCLTKEEYTKICGEPFSES >gi|308151732|gb|GL476290.1| GENE 102 97410 - 97730 397 106 aa, chain - ## HITS:1 COG:no KEGG:EF1995 NR:ns ## KEGG: EF1995 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 140 99.0 2e-32 MKIWIDDIQGYLDGYSTMEQPNKIELEVEKEPTDFFNYRWDGTSLIYDPDNVPEPEPTTP TELELLQKQNAELMKQVSQQNQVIQQTQRMTGELMKQVAELTKGAE >gi|308151732|gb|GL476290.1| GENE 103 97744 - 98235 611 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227519338|ref|ZP_03949387.1| ## NR: gi|227519338|ref|ZP_03949387.1| hypothetical protein HMPREF0348_2321 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_2616 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0638 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01575 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02963 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0348_2321 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_2616 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0638 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02963 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01575 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_02188 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9517_01927 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9507_01841 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_03118 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_01252 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2359 [Enterococcus faecalis 62] # 1 163 1 163 163 316 100.0 3e-85 MTTDIVQLKEKGKPVYLKTHTAAIDGLESYIKKIDADKAYQKITKKEPLWTGAWYGGAAG NGQVPSKSLSQCENGWILQWQEYTKEGALNGACYHFFLVPKQHAQNPGSGGVIFLLHGYY TNLVRKYLYIKDTKITGNDLNASSSDTAGSGSKMFALSAIYEY >gi|308151732|gb|GL476290.1| GENE 104 98235 - 98522 464 95 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1473 NR:ns ## KEGG: MPTP_1473 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 95 1 80 80 85 54.0 9e-16 MTDIVKVKQGGTQVFPQTHWNAVEGKPEVLKGEKGDPGPQGPKGDKGDVGPQGPAGQNAT TTDVATSIKNGLMSKEDKTKLDGLPAITFEKVGEV >gi|308151732|gb|GL476290.1| GENE 105 98519 - 99115 789 198 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1474 NR:ns ## KEGG: MPTP_1474 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 197 1 205 205 202 59.0 7e-51 MVKAKRMMETDENGVERQFYPITHASAVRGLEKIIAGQSKVLSVNGYTGAVIITKADLGL ENALTELPYATEETDGIITAEMFQRLSNGEGGVYILPIATADELGGIKVGQLLEITEDGT LSAVKQTDQNFTTELKSKLEELKGYTAGANISISEDGVISATGGGDGGGVNQQYVDQKVQ EAIDRIPDITFERVGEVE >gi|308151732|gb|GL476290.1| GENE 106 99108 - 99989 1004 293 aa, chain - ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 299 302 486 82.0 1e-136 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAILVENAWPLDLTGCEVFFESVIDNKY PIQRSAKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGATQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMNAFINENKGDFTDWMNARKEEFEAWRDAQKTDFTSWFESIK DILKTIDPGGTMLAELMDARVDIQGVRHNSISERLLADMEYLYQKLEKRLYTLEYGEISD LIILQDDAFSLNHETEIVGTVDYPAIDGALVIATVDDTKQNAYVFEKVGEISG >gi|308151732|gb|GL476290.1| GENE 107 100008 - 102800 2435 930 aa, chain - ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 1 751 1 727 727 491 39.0 1e-138 MIPVIFKPGEKDFSTNGLGRLVDATRCEITEEANGKYELEMDYPAISRFSDYFENGYQIK AKPNDLEEYHIFEIKQTFKDTFTNSIVIYAQSRTYKLGNRQVRLVTVDNRNGAEAMKLIE QNMDEPCDIKLYSDINTASSTTFEARNVLNCIAGEQGSLLQYWGGEIKREPFKLSLLKRR GRDNVGTVRYGKDLKGLTIKFDWQSIVTKVLPFAELQSGADGTSQRIYGNAVKSEYISKY PDVYAQYIQFTEDQGVKDIASLNKVASKYFTTLYPGSDKPKVSIELEIEKLTDSEEAKEF AKMRNYNLFDTFTVYHKLYDIDIQTKVTGIVYDALAEKTIKITAGDIQVAFYKQQSQDFQ EAIKTLTKKEYMSDFVDYITNLINGVEGGSILQYPKNRPNTHYYLDTESTDTAKDVIAIN NKGIGFSRTGWKGPFKNAWGINGVLNADFIGAGKIKSNIFETSFNSCGDILRMVNGTLQA WNNKKKIMELTKKGMEFWNGNSHVGTMGTKGNPFPGLADKNGNPVVSDGNSLLLVADNPQ KIIGLSNQSGTGHLITGPTQFFVGNNFNFFGPNGSKAILTVDRLIVGGKEVIPGQNGGGG SGAGTGGYPSEVTSDADKFAWDLWSYLLANGYSKAAAAGILGNVQGEVGPSMNPDTEQIG GPAYGWVQWDGSAYPLVGAPTWNGREYVQRLIAAAGIKQDYRTSLAQAQLINWCMFNGQW LGQVSPLTVDEFKVVSSPKTAAYAFELNFERPAAAHPERQTYAQVWYDKFKDLKASTATG KAGIEHLETLMGKWLGNGQCYAVPAEYSGFMGGCGLGAGTIYGFSHVIGDTSSAADIGEA YDWNAVGWRVIQNPTYQDLVVGAIVNIRRGGQWGTGWTVDPTYGHTGVIYGLNNGRIQTI EQNAEQGQIVAKYDRLYFANSIQSIVIPPK >gi|308151732|gb|GL476290.1| GENE 108 102797 - 103552 448 251 aa, chain - ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 13 251 4 249 249 156 37.0 3e-38 MQRGVLLVEFKRGQFFLNGKHSSEFNVFMRERPERLSAGRVVELRERMGNDSIAVDFAYY KNVERTITCYAKANTLQEVSFLEDEISFWLDMGNYSDFIVYFDEHYIYQAIVTSPPKFTG TRKSGVLIPFEFTVSIRPFKKNRIGQYWISNPNQLINTEKYPSEPIIQILGSGDISFFIN NQSYSLKAINGDIIIDSEKQEAYRKSGGAFEILDHKTLFKDYPILKCGENNFRWTGKVTE FKVQPNWRRKV >gi|308151732|gb|GL476290.1| GENE 109 103521 - 106445 2860 974 aa, chain - ## HITS:1 COG:BH0960 KEGG:ns NR:ns ## COG: BH0960 COG5412 # Protein_GI_number: 15613523 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 379 890 95 494 584 94 23.0 1e-18 MNNEDLVLKMILDESGFSQGLNSAVKKLQGFDVEVDRTGQKGGRSLGSIWTSFVGNFLAS GATKIISKGIGLITSNIDGAINRVDTLNNANRVFENMGFSAGETSKTMDSLKKSIQGLPT PLDSAIKGVQLIASSTNDLGKSEQIFAALNNGILGFGGSAEMVENAIIQLSQSFSNGKVD AQTWNSMINSGLGPALNALAKQMGLTAGQMKEGLSDGSISVEEFQDALIKLNKEGGGGLK SLEQIAKDSTAGIKTGLANMKTAIVRGVANVVTKIDEGLKSAGFGSISEIIADKGAKMEA ALSKFAEMIPPMIKTAKTLYDTLKPYATLLAGLAGSIGTLMLVNKVNAAFKAWREGTEAL SIAQAILNKTMLSNPFVAILTAVVGLVTAFIYLWKTNEGFRDAVKNIWKNIQEVISSAAD VVVKAWNSTMEFFSNMWDGTKEAFSNAGTWMKEAPGNAADWVKNKWNGTKEFFSGLWNST KEGSKNTWENIKQSAADSAKSVGESFKNGFDNVKDWFKGVGKSISDVFTTAFDFVWKYIG PYVTGIKNAFKMVVNAMKANIENVKMIAENVVTILKNVLLAPILFITSMITGGWEEAKEN MIAVWDNIAEAAQTIWFGIKNIFYNTVTAISYSVTSIFNGLMLTIKKIWIDVKLFFTLLW IDIKYGAINVWIEIKYSIIETWINIKFEAIRIWESLKTWFFETVENIKNGVIDGWNSLKQ GTVDTFNATVQWSKDTWNNFKQWIVDLVTGIKDGIINGWENLKQGTVNIFNNLVQGAKNA WNNLKRSVSDTVENVKQTFNDMRHIDLFEIGKNIIQGLVNGIGSMIGAVNKKIKEVAGNI KEKIKGALGIHSPSRWMRDMIGKNIVLGVVAGIDQEKGTLDKSVKKMTDLPTELPNFSTT GRYINQQGAQTESLAKNKGNATTNIGGDTFNINIQAMGKLNEKQLMDMAKDLVKYIQIVK NRDSDATGGAFGGI >gi|308151732|gb|GL476290.1| GENE 110 106666 - 107016 521 116 aa, chain - ## HITS:1 COG:no KEGG:EF2004 NR:ns ## KEGG: EF2004 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 204 100.0 7e-52 MASKFQQKIKLMIKDGSKYTTKQFTSAEFLPGSVMDTGTDLQIRLEEATKTNDMEAIRPI LRECYDFIADVIFEKQFTGQEYIDGMDARELLKITAQLLGSVTSGYDAIYSEQKKK >gi|308151732|gb|GL476290.1| GENE 111 107069 - 107917 1067 282 aa, chain - ## HITS:1 COG:YPO2116 KEGG:ns NR:ns ## COG: YPO2116 COG5492 # Protein_GI_number: 16122351 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Yersinia pestis # 198 279 224 305 306 63 46.0 4e-10 MAKMKNVSVISVEKPTWFPLKDETGAFPVYGTPITIGTAVSIKPDVTTETTPDYGDSVVQ DQYVAFGGAEVTLETNGYQNEVLAEITGGKKLKGGVLRSADDIASDGAFAYRRRKSNGKY RYTIFYKGKFALTSDETSTLEGSSVSYTHPEWTGSFVDVPGLGYMYSVDEDDEGVDLEMI KNWFTEVMDPRKENTTAVTGVTLDQTELNLKVGQTATLTPTITPDNASNKKYQFRSESEA IGTVTPIQGKVTAVGEGTTEIVVTTEDGNFTAKCTLNVTTAD >gi|308151732|gb|GL476290.1| GENE 112 107918 - 108292 237 124 aa, chain - ## HITS:1 COG:no KEGG:EF2006 NR:ns ## KEGG: EF2006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 220 95.0 1e-56 MYDKILKMLTDTIKQFSNAPIYLDDVMQSSEPFYFVLSLEESLTDNVGQNVQNKAYNVDI ALVDSKKDKQLVTSLTESCGAFFNVLNLDGNELFPEDYQTFKTDGIQHINFNVAFPQLIE WSEK >gi|308151732|gb|GL476290.1| GENE 113 108295 - 108639 305 114 aa, chain - ## HITS:1 COG:no KEGG:EF2007 NR:ns ## KEGG: EF2007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 10 114 28 132 132 184 99.0 9e-46 MKVSSKYILREGAAMVNDSLAKIYQLIVPMTPIKSGDLRRGYRIIKARKLSSGRIVGALI NNEKYFRYVNDGHRTKNGGFVKGRFMLQKSNKLANATYIPKRFKQMAIIIVKKG Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:24:49 2011 Seq name: gi|308151731|gb|GL476291.1| Enterococcus faecalis TX4000 genomic scaffold Scfld117, whole genome shotgun sequence Length of sequence - 166292 bp Number of predicted genes - 177, with homology - 173 Number of transcription units - 77, operones - 42 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 461 - 491 1.1 1 1 Tu 1 3/0.050 - CDS 497 - 1993 2198 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 2022 - 2081 4.1 - Term 2044 - 2080 4.1 2 2 Op 1 2/0.100 - CDS 2087 - 3100 550 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 3 2 Op 2 1/0.150 - CDS 3097 - 3993 1129 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 4091 - 4150 5.5 - Term 4087 - 4150 23.2 4 3 Op 1 11/0.000 - CDS 4155 - 6311 1338 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 6344 - 6403 2.2 5 3 Op 2 10/0.000 - CDS 6405 - 6950 662 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 6 3 Op 3 2/0.100 - CDS 6969 - 8357 981 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 8376 - 8429 9.0 7 4 Op 1 . - CDS 8443 - 8922 361 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein 8 4 Op 2 . - CDS 8967 - 9446 500 ## EF0261 hypothetical protein - Prom 9474 - 9533 5.5 - Term 9626 - 9692 10.0 9 5 Op 1 1/0.150 - CDS 9701 - 9964 388 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 10 5 Op 2 2/0.100 - CDS 9979 - 10899 867 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 11 5 Op 3 2/0.100 - CDS 10915 - 11568 795 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 12 5 Op 4 7/0.000 - CDS 11584 - 15123 3741 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 13 5 Op 5 . - CDS 15143 - 15709 672 ## COG0193 Peptidyl-tRNA hydrolase - Prom 15777 - 15836 8.3 + Prom 15925 - 15984 7.5 14 6 Tu 1 . + CDS 16045 - 17028 1200 ## COG0039 Malate/lactate dehydrogenases + Term 17091 - 17149 20.0 15 7 Tu 1 . - CDS 17255 - 18745 1650 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 18776 - 18835 14.4 - Term 18919 - 18979 12.7 16 8 Tu 1 . - CDS 19023 - 20528 1650 ## COG1705 Muramidase (flagellum-specific) - Prom 20646 - 20705 8.3 - Term 20653 - 20690 -0.7 17 9 Op 1 . - CDS 20763 - 21275 647 ## COG1827 Predicted small molecule binding protein (contains 3H domain) 18 9 Op 2 . - CDS 21286 - 22131 902 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 19 9 Op 3 . - CDS 22136 - 22849 690 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 22869 - 22928 6.1 + Prom 22939 - 22998 5.7 20 10 Tu 1 . + CDS 23022 - 23318 364 ## EF0248 hypothetical protein + Term 23319 - 23370 10.6 + Prom 23720 - 23779 3.5 21 11 Op 1 34/0.000 + CDS 23877 - 25460 2083 ## COG0765 ABC-type amino acid transport system, permease component 22 11 Op 2 . + CDS 25472 - 26212 279 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 26213 - 26272 20.1 - Term 26207 - 26251 8.1 23 12 Tu 1 . - CDS 26257 - 26826 612 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 26924 - 26983 8.5 + Prom 26920 - 26979 8.9 24 13 Op 1 . + CDS 27015 - 27506 412 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 27511 - 27570 3.7 25 13 Op 2 . + CDS 27597 - 28952 1641 ## COG1114 Branched-chain amino acid permeases + Term 28965 - 29018 15.1 + Prom 28999 - 29058 3.4 26 14 Tu 1 . + CDS 29085 - 29396 543 ## COG0393 Uncharacterized conserved protein + Term 29406 - 29464 14.2 - Term 29399 - 29443 8.2 27 15 Op 1 8/0.000 - CDS 29447 - 30196 860 ## COG0101 Pseudouridylate synthase 28 15 Op 2 34/0.000 - CDS 30215 - 31009 750 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 29 15 Op 3 15/0.000 - CDS 31009 - 31878 440 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 30 15 Op 4 . - CDS 31854 - 32693 1154 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 32779 - 32838 7.4 - Term 32841 - 32883 9.1 31 16 Op 1 . - CDS 32895 - 34070 1256 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 32 16 Op 2 . - CDS 34086 - 35285 1296 ## EF0235 hypothetical protein - Prom 35338 - 35397 7.7 - Term 35473 - 35526 1.0 33 17 Op 1 50/0.000 - CDS 35560 - 35943 618 ## PROTEIN SUPPORTED gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 34 17 Op 2 32/0.000 - CDS 36017 - 36955 1076 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 35 17 Op 3 48/0.000 - CDS 37036 - 37425 654 ## PROTEIN SUPPORTED gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 36 17 Op 4 . - CDS 37453 - 37818 606 ## PROTEIN SUPPORTED gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 37 17 Op 5 . - CDS 37838 - 37954 210 ## PROTEIN SUPPORTED gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 38 17 Op 6 6/0.000 - CDS 37987 - 38205 311 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 38333 - 38392 6.9 - Term 38240 - 38273 2.0 39 17 Op 7 28/0.000 - CDS 38416 - 39066 829 ## COG0563 Adenylate kinase and related kinases - Term 39109 - 39145 5.7 40 17 Op 8 53/0.000 - CDS 39153 - 40451 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 41 17 Op 9 48/0.000 - CDS 40452 - 40892 731 ## PROTEIN SUPPORTED gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 42 17 Op 10 50/0.000 - CDS 40940 - 41119 286 ## PROTEIN SUPPORTED gi|29374869|ref|NP_814022.1| ribosomal protein L30 43 17 Op 11 56/0.000 - CDS 41134 - 41634 817 ## PROTEIN SUPPORTED gi|29374868|ref|NP_814021.1| ribosomal protein S5 44 17 Op 12 46/0.000 - CDS 41655 - 42020 599 ## PROTEIN SUPPORTED gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 - Prom 42057 - 42116 3.5 - Term 42088 - 42129 4.1 45 17 Op 13 55/0.000 - CDS 42172 - 42708 909 ## PROTEIN SUPPORTED gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 46 17 Op 14 50/0.000 - CDS 42740 - 43138 660 ## PROTEIN SUPPORTED gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 47 17 Op 15 50/0.000 - CDS 43174 - 43359 333 ## PROTEIN SUPPORTED gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 48 17 Op 16 48/0.000 - CDS 43378 - 43917 896 ## PROTEIN SUPPORTED gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 49 17 Op 17 57/0.000 - CDS 43943 - 44254 517 ## PROTEIN SUPPORTED gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 50 17 Op 18 50/0.000 - CDS 44290 - 44658 591 ## PROTEIN SUPPORTED gi|29374861|ref|NP_814014.1| ribosomal protein L14 51 17 Op 19 50/0.000 - CDS 44716 - 45003 476 ## PROTEIN SUPPORTED gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 52 17 Op 20 50/0.000 - CDS 45006 - 45194 296 ## PROTEIN SUPPORTED gi|29374859|ref|NP_814012.1| ribosomal protein L29 53 17 Op 21 50/0.000 - CDS 45184 - 45618 753 ## PROTEIN SUPPORTED gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 54 17 Op 22 61/0.000 - CDS 45621 - 46277 1112 ## PROTEIN SUPPORTED gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 55 17 Op 23 59/0.000 - CDS 46344 - 46697 564 ## PROTEIN SUPPORTED gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 56 17 Op 24 60/0.000 - CDS 46713 - 46991 486 ## PROTEIN SUPPORTED gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 57 17 Op 25 61/0.000 - CDS 47034 - 47864 1431 ## PROTEIN SUPPORTED gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 58 17 Op 26 61/0.000 - CDS 47904 - 48194 471 ## PROTEIN SUPPORTED gi|29374853|ref|NP_814006.1| ribosomal protein L23 59 17 Op 27 58/0.000 - CDS 48194 - 48817 1033 ## PROTEIN SUPPORTED gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 60 17 Op 28 40/0.000 - CDS 48843 - 49472 1059 ## PROTEIN SUPPORTED gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 61 17 Op 29 . - CDS 49494 - 49838 576 ## PROTEIN SUPPORTED gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 62 18 Op 1 . - CDS 49948 - 50082 48 ## PROTEIN SUPPORTED gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 - Term 50086 - 50134 9.5 63 18 Op 2 . - CDS 50151 - 51317 1325 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases - Prom 51467 - 51526 7.0 - Term 51540 - 51574 -0.3 64 19 Tu 1 . - CDS 51589 - 52413 1082 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 52434 - 52493 3.1 - Term 52499 - 52541 7.7 65 20 Op 1 30/0.000 - CDS 52594 - 53781 1486 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 53862 - 53921 7.2 66 20 Op 2 51/0.000 - CDS 53932 - 56013 2272 ## COG0480 Translation elongation factors (GTPases) - Prom 56036 - 56095 1.9 67 20 Op 3 56/0.000 - CDS 56097 - 56567 806 ## PROTEIN SUPPORTED gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 68 20 Op 4 . - CDS 56623 - 57036 706 ## PROTEIN SUPPORTED gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 - Prom 57192 - 57251 5.1 + Prom 57295 - 57354 3.9 69 21 Op 1 . + CDS 57381 - 58061 942 ## COG0120 Ribose 5-phosphate isomerase 70 21 Op 2 . + CDS 58103 - 58678 596 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 58679 - 58733 12.5 + Prom 58749 - 58808 5.9 71 22 Tu 1 . + CDS 58853 - 59539 862 ## COG0588 Phosphoglycerate mutase 1 - Term 59518 - 59560 -0.5 72 23 Tu 1 . - CDS 59588 - 60775 1373 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 60803 - 60862 5.5 73 24 Op 1 20/0.000 - CDS 60904 - 61908 1114 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 74 24 Op 2 35/0.000 - CDS 61905 - 62825 665 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Term 62853 - 62881 -0.0 75 24 Op 3 . - CDS 62912 - 63712 259 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 63777 - 63836 9.4 + Prom 63694 - 63753 8.5 76 25 Tu 1 . + CDS 63950 - 64888 1184 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 64894 - 64934 7.1 - Term 64881 - 64921 7.1 77 26 Op 1 1/0.150 - CDS 64927 - 65634 975 ## COG0813 Purine-nucleoside phosphorylase 78 26 Op 2 4/0.050 - CDS 65652 - 66470 1098 ## COG0005 Purine nucleoside phosphorylase 79 26 Op 3 . - CDS 66487 - 67653 1413 ## COG1015 Phosphopentomutase - Prom 67693 - 67752 5.6 - Term 67852 - 67886 -0.4 80 27 Tu 1 . - CDS 67955 - 68548 422 ## COG3548 Predicted integral membrane protein - Prom 68581 - 68640 6.9 - Term 68767 - 68803 7.0 81 28 Op 1 26/0.000 - CDS 68816 - 69769 1286 ## COG1079 Uncharacterized ABC-type transport system, permease component 82 28 Op 2 24/0.000 - CDS 69769 - 70902 1211 ## COG4603 ABC-type uncharacterized transport system, permease component 83 28 Op 3 15/0.000 - CDS 70895 - 72463 2211 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 72564 - 72623 3.8 - Term 72568 - 72611 7.1 84 29 Op 1 2/0.100 - CDS 72669 - 73754 1541 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 85 29 Op 2 3/0.050 - CDS 73808 - 74881 1378 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 74904 - 74963 3.3 86 30 Op 1 3/0.050 - CDS 74977 - 75372 419 ## COG0295 Cytidine deaminase 87 30 Op 2 7/0.000 - CDS 75410 - 76072 943 ## COG0274 Deoxyribose-phosphate aldolase 88 30 Op 3 1/0.150 - CDS 76100 - 77401 1783 ## COG0213 Thymidine phosphorylase - Prom 77426 - 77485 6.6 89 31 Tu 1 . - CDS 77542 - 78549 982 ## COG1609 Transcriptional regulators - Prom 78627 - 78686 10.4 + Prom 78584 - 78643 8.4 90 32 Tu 1 . + CDS 78709 - 79722 937 ## COG1816 Adenosine deaminase + Term 79727 - 79764 7.1 - Term 79713 - 79750 7.1 91 33 Op 1 . - CDS 79755 - 80363 783 ## COG2813 16S RNA G1207 methylase RsmC 92 33 Op 2 . - CDS 80378 - 80965 716 ## COG2755 Lysophospholipase L1 and related esterases - Prom 80995 - 81054 4.0 + Prom 81002 - 81061 5.6 93 34 Tu 1 . + CDS 81120 - 82043 986 ## COG1072 Panthothenate kinase + Prom 82088 - 82147 5.5 94 35 Tu 1 . + CDS 82355 - 83917 1813 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 83919 - 83982 19.1 95 36 Op 1 . - CDS 83985 - 85178 841 ## COG0582 Integrase 96 36 Op 2 . - CDS 85205 - 85405 245 ## SAV0393 hypothetical protein - Prom 85449 - 85508 9.4 + Prom 85290 - 85349 6.9 97 37 Tu 1 . + CDS 85485 - 85688 107 ## CD0510B conjugative transposon protein (partial) - Term 85834 - 85862 -0.2 98 38 Op 1 . - CDS 85901 - 86131 250 ## smi_1339 polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) 99 38 Op 2 . - CDS 86128 - 86550 313 ## SAV0395 hypothetical protein + Prom 86885 - 86944 6.7 100 39 Tu 1 . + CDS 87081 - 87434 315 ## smi_1336 transcriptional regulator, Tn916 - Term 87448 - 87501 8.0 101 40 Tu 1 . - CDS 87602 - 87676 80 ## - Prom 87713 - 87772 3.0 102 41 Op 1 . - CDS 87790 - 88566 585 ## CD0824 putative lantibiotic ABC transporter permease 103 41 Op 2 . - CDS 88581 - 89339 457 ## CD0823 putative lantibiotic ABC transporter permease 104 41 Op 3 3/0.050 - CDS 89332 - 90255 265 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 90317 - 90376 4.0 105 42 Op 1 40/0.000 - CDS 90378 - 91304 380 ## COG0642 Signal transduction histidine kinase 106 42 Op 2 . - CDS 91308 - 92003 645 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 92097 - 92156 5.1 - Term 92216 - 92255 1.0 107 43 Op 1 . - CDS 92265 - 93203 697 ## SAV0399 hypothetical protein 108 43 Op 2 . - CDS 93220 - 94242 177 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein 109 43 Op 3 . - CDS 94239 - 96200 955 ## SAV0401 hypothetical protein 110 43 Op 4 . - CDS 96251 - 98704 1946 ## smi_1330 ATP/GTP-binding protein 111 43 Op 5 . - CDS 98688 - 99083 252 ## SAV0403 hypothetical protein - Term 99104 - 99140 3.4 112 44 Op 1 . - CDS 99154 - 100179 278 ## gi|314937367|ref|ZP_07844704.1| hypothetical protein HMPREF9525_00050 113 44 Op 2 . - CDS 100251 - 100751 622 ## smi_1327 hypothetical protein 114 44 Op 3 . - CDS 100813 - 101592 468 ## smi_1326 hypothetical protein 115 44 Op 4 . - CDS 101634 - 101804 184 ## smi_1325 hypothetical protein 116 44 Op 5 . - CDS 101852 - 102124 270 ## lmo1110 hypothetical protein 117 44 Op 6 1/0.150 - CDS 102121 - 103305 1130 ## COG2946 Putative phage replication protein RstA - Prom 103342 - 103401 2.3 - Term 103314 - 103362 3.6 118 45 Op 1 . - CDS 103487 - 104890 934 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 119 45 Op 2 . - CDS 104912 - 105685 427 ## smi_1322 hypothetical protein 120 45 Op 3 . - CDS 105695 - 106072 480 ## smi_1321 hypothetical protein 121 45 Op 4 . - CDS 106093 - 106407 364 ## smi_1320 hypothetical protein - Prom 106614 - 106673 7.3 + Prom 106894 - 106953 3.4 122 46 Tu 1 . + CDS 107024 - 107155 59 ## + Prom 107171 - 107230 10.3 123 47 Tu 1 1/0.150 + CDS 107258 - 108565 1130 ## COG5492 Bacterial surface proteins containing Ig-like domains + Prom 108567 - 108626 36.1 124 48 Op 1 . + CDS 108658 - 109641 801 ## COG5492 Bacterial surface proteins containing Ig-like domains 125 48 Op 2 . + CDS 109651 - 110028 222 ## EF0122 hypothetical protein + Term 110125 - 110177 4.1 + Prom 110103 - 110162 4.6 126 49 Tu 1 . + CDS 110195 - 110740 674 ## EF0120 hypothetical protein + Term 110744 - 110797 15.6 - Term 110731 - 110785 17.1 127 50 Op 1 . - CDS 110789 - 111577 913 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 128 50 Op 2 . - CDS 111579 - 112544 937 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - Prom 112575 - 112634 4.4 + Prom 112551 - 112610 6.8 129 51 Op 1 . + CDS 112642 - 114054 1166 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 130 51 Op 2 . + CDS 114051 - 114494 443 ## COG4815 Uncharacterized protein conserved in bacteria 131 52 Tu 1 . - CDS 114534 - 115802 1370 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 115829 - 115888 7.1 132 53 Tu 1 . - CDS 116231 - 118717 444 ## PROTEIN SUPPORTED gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 - Prom 118787 - 118846 8.4 - Term 118886 - 118947 4.6 133 54 Tu 1 . - CDS 118949 - 119965 1031 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 120135 - 120194 6.1 + Prom 120058 - 120117 5.0 134 55 Op 1 . + CDS 120145 - 120480 527 ## EF0110 ArsR family transcriptional regulator 135 55 Op 2 . + CDS 120477 - 121157 595 ## COG0693 Putative intracellular protease/amidase + Term 121160 - 121204 11.0 - Term 121143 - 121196 13.4 136 56 Op 1 . - CDS 121248 - 122699 1487 ## COG1288 Predicted membrane protein 137 56 Op 2 . - CDS 122747 - 123436 393 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 138 56 Op 3 8/0.000 - CDS 123464 - 124396 1342 ## COG0549 Carbamate kinase - Prom 124418 - 124477 3.4 - Term 124420 - 124462 9.4 139 57 Op 1 7/0.000 - CDS 124502 - 125521 1459 ## COG0078 Ornithine carbamoyltransferase 140 57 Op 2 1/0.150 - CDS 125550 - 126776 1429 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 - Prom 126941 - 127000 19.4 - Term 127018 - 127070 20.4 141 58 Tu 1 . - CDS 127073 - 127561 519 ## COG1438 Arginine repressor - Prom 127717 - 127776 5.3 142 59 Tu 1 . + CDS 127804 - 128283 417 ## COG1438 Arginine repressor + Term 128353 - 128387 3.1 + Prom 128369 - 128428 8.4 143 60 Tu 1 . + CDS 128449 - 129363 681 ## COG2267 Lysophospholipase + Term 129368 - 129407 8.6 - Term 129356 - 129395 8.6 144 61 Op 1 . - CDS 129400 - 130671 1386 ## COG0172 Seryl-tRNA synthetase 145 61 Op 2 9/0.000 - CDS 130698 - 131591 1225 ## COG1760 L-serine deaminase 146 61 Op 3 1/0.150 - CDS 131606 - 132313 860 ## COG1760 L-serine deaminase 147 61 Op 4 . - CDS 132288 - 133394 1424 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 133526 - 133585 7.1 + Prom 133395 - 133454 9.9 148 62 Tu 1 . + CDS 133651 - 134391 620 ## COG2964 Uncharacterized protein conserved in bacteria - Term 134356 - 134406 18.1 149 63 Op 1 . - CDS 134423 - 135208 758 ## EF0095 putative lipoprotein - Prom 135236 - 135295 5.0 - Term 135301 - 135343 6.4 150 63 Op 2 . - CDS 135364 - 136125 973 ## COG2116 Formate/nitrite family of transporters - Prom 136222 - 136281 6.9 - Term 136231 - 136278 11.1 151 64 Op 1 . - CDS 136302 - 139334 1897 ## EF0093 cell wall surface anchor family protein 152 64 Op 2 . - CDS 139349 - 139588 381 ## EF0092 hypothetical protein - Term 139776 - 139840 20.5 153 65 Op 1 . - CDS 139924 - 141429 1372 ## EF0091 hypothetical protein - Prom 141450 - 141509 4.2 154 65 Op 2 . - CDS 141511 - 142422 1074 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 142469 - 142528 8.3 - Term 142630 - 142688 18.2 155 66 Tu 1 . - CDS 142699 - 148797 6398 ## COG4932 Predicted outer membrane protein - Prom 148854 - 148913 3.8 156 67 Op 1 . + CDS 149508 - 150995 1106 ## EF0086 hypothetical protein 157 67 Op 2 . + CDS 150989 - 151882 841 ## EF0085 hypothetical protein 158 67 Op 3 . + CDS 151943 - 152473 284 ## EF0084 hypothetical protein + Term 152511 - 152577 21.0 - Term 152558 - 152611 2.1 159 68 Op 1 . - CDS 152629 - 152808 334 ## EF0083 hypothetical protein 160 68 Op 2 . - CDS 152829 - 154064 1427 ## COG0477 Permeases of the major facilitator superfamily - Prom 154223 - 154282 7.1 - Term 154372 - 154414 10.3 161 69 Op 1 . - CDS 154431 - 154673 499 ## COG2261 Predicted membrane protein 162 69 Op 2 . - CDS 154697 - 155257 1011 ## COG1302 Uncharacterized protein conserved in bacteria 163 69 Op 3 . - CDS 155316 - 155828 771 ## COG1302 Uncharacterized protein conserved in bacteria 164 69 Op 4 . - CDS 155841 - 156032 335 ## EF0078 hypothetical protein 165 69 Op 5 . - CDS 156045 - 156617 669 ## EF0077 hypothetical protein 166 69 Op 6 . - CDS 156630 - 157523 175 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 157603 - 157662 10.7 + Prom 157589 - 157648 7.0 167 70 Tu 1 . + CDS 157797 - 158450 767 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 158456 - 158501 15.0 168 71 Op 1 . - CDS 158493 - 159410 772 ## EF0073 Cro/CI family transcriptional regulator 169 71 Op 2 . - CDS 159490 - 159582 68 ## - Prom 159829 - 159888 16.4 - Term 159903 - 159957 15.6 170 72 Op 1 . - CDS 159998 - 161236 1433 ## EF0071 putative lipoprotein 171 72 Op 2 . - CDS 161384 - 162295 953 ## EF0071 putative lipoprotein - Prom 162358 - 162417 4.6 + Prom 162232 - 162291 3.6 172 73 Tu 1 . + CDS 162313 - 162387 56 ## + Term 162593 - 162655 3.0 - Term 162381 - 162417 -0.1 173 74 Tu 1 . - CDS 162473 - 163168 744 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 163337 - 163396 6.1 + Prom 163301 - 163360 6.7 174 75 Tu 1 . + CDS 163393 - 163821 368 ## EF0068 hypothetical protein + Term 163895 - 163936 3.2 - Term 163871 - 163932 11.0 175 76 Op 1 29/0.000 - CDS 163945 - 164961 1446 ## COG2255 Holliday junction resolvasome, helicase subunit 176 76 Op 2 . - CDS 164974 - 165630 786 ## COG0632 Holliday junction resolvasome, DNA-binding subunit - Prom 165652 - 165711 4.7 177 77 Tu 1 . - CDS 165835 - 166227 310 ## gi|315168283|gb|EFU12300.1| Abi-like protein Predicted protein(s) >gi|308151731|gb|GL476291.1| GENE 1 497 - 1993 2198 498 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 498 1 497 499 709 72.0 0 MAEEQQAHLEDLNDQMLVRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTKEELS EMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFKHADLGDFFG VTGQIMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDR FMKRSQIISEIRRYLDGNGYVEVETPVLHNEAGGAAARPFITHHNALDMDLYLRIALELH LKRLIVGGMEKVYEIGRVFRNEGIDTTHNPEFTMLEAYTAYTDYQDVMDLTEGIIRNAAE KVLGTTDITYDGQAVDLGSPFKRLHMVDAVKEQTGVDFWQEMTIEEARALAKEHNVEITD AMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLAKKNPEDGRFTDRFELFIIGKEFA NAFTELNDPIDQRERFEEQEKEREQGNDEAHGVDEDFIEALEYGLPPTGGLGIGIDRLVM LLTDAQSIRDVLLFPTMR >gi|308151731|gb|GL476291.1| GENE 2 2087 - 3100 550 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 327 22 347 353 216 37 5e-55 VGGKTMWKIGDVEIPNRVVVAPMAGISNAAFRVTVKEFGAGLVVCEMISDKGIKLRNKKT LEMLYIDEREYPLSVQIFGGDKETLVEAAKFVEENTQAAIIDINMGCPVNKIIKAEAGAK WLLDPNKVHEMVHAVSSAVSLPVTVKMRTGWDEDHLYAVDNALAAEQAGASAIAMHGRTR VQMYEGTVNWDVLKEVKKHLTIPFMGNGDVKTPEDAKRMLEYVGADGVMIGRAALGNPWM IQRTKEYLETGELMPEPSPAEKINIAKVHLQRLVDLKGEKIAVREFRQHASYYLKGISRA AKVKVAINQVETQQAVVDLLDAFVEKISKVAVTTIEE >gi|308151731|gb|GL476291.1| GENE 3 3097 - 3993 1129 298 aa, chain - ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 293 2 291 291 351 58.0 1e-96 MEDYLVKALCYKGSIRAYAISATETVSEAQRRHDTWSSSTAALGRTLIGALLLGATLKGD DKLTVKVQGNGPAGAIIVDSNGRGETKGYIKNPHVSLKLNATGKIDVRGAVGNEGIFTVI KDLGLKETFSGQTPIVSGEIGEDFTYFMAVSEQVPSAIGLGVLVDTDESVKAAGGFMIQV MPGADESTIDFIEQRLAEVPPISQLLENGETPEQVLYRLLGEDEVEILEKMPVQFKCDCS KEKFATALIAVGIDELNAMIDEDHGAEAVCQFCNNKYHYSEEELIELRDEAIRNTKQK >gi|308151731|gb|GL476291.1| GENE 4 4155 - 6311 1338 718 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 122 659 94 635 636 520 50 1e-146 MNKKNNGMKNGLYYVLVVLAMVMVVYFIFGNNNQQSPDIDYSTFQQQLEDGKVKDMTIQP TNGVYRIEGQYKEKQEVKDTGGLSLWGSTQASSKGFTTTVLPSDTTLAGIQDAAQNNKVK LVVKEQSTSGAWLSLLFSFLPLVIIFFFFYMMMSQQGGGGGGGGRVMNFGKSKAKEADKK ANRVRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAKAV AGEAGVPFYSISGSDFVEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAGMG GGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPDVK GREAILRVHAKNKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDASDV DEAEDRVIAGPAKKDRVINKKEREMVAYHEAGHTIVGLVLSRARVVHKVTIIPRGRAGGY MIALPKEDQFLMTKEDMFEQIVGLLGGRTAEEIIFGVQSTGASNDFEQATGIARSMVTEY GMSDKLGPVQYEGNHQVFVGRDYGQTKAYSEQVAFEIDQEVRRILMDAHTKAHEIIEAHR EQHKLIAEKLLEYETLDAKAIKSLFETGKMPEGADSDYPSEKEAQTFEEAKRALEEKEAQ KQVEEKQDFEEAKKELHDEAEEVKVESEQTEKEVQSEEKKDSDSNSEYDRNNYEDRYK >gi|308151731|gb|GL476291.1| GENE 5 6405 - 6950 662 181 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 2 178 1 177 179 255 74.0 3e-68 MIEKDIEKVLISKEEILAKSAELGKQLTEKYQGKNPLVVGILKGAVPFMADLTREINTYL ELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRHILIVEDIIDSGRTLAYLVDLFRYRKA ASVKIVTLLDKPEGRVVDIKADYVGFDVPNEFVVGYGLDYAETYRNLPYIGVLKPEVYES N >gi|308151731|gb|GL476291.1| GENE 6 6969 - 8357 981 462 aa, chain - ## HITS:1 COG:SPy0013 KEGG:ns NR:ns ## COG: SPy0013 COG0037 # Protein_GI_number: 15674260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Streptococcus pyogenes M1 GAS # 2 443 4 407 428 202 31.0 1e-51 MFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTLMEQVAEKEQLQLVVAHVNHQLRE ASAQEAQYLATYCQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMT AHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELYQFAQRQAFV YFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSE AVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQ PQGSVMLEQQWQLAKSYDWLCLEQKQVALREEVTHLLVPGAGIYLSETEWLGLIATDKPF PLPEEINQWTGQLLAIPLITATPLTVRHRQSGDRITLKPGFTKKLSRVFIDQKVPNEARE SAWVITDEQEEIIWVPKFANSYLSIPLETDKIHYRLLFKTKE >gi|308151731|gb|GL476291.1| GENE 7 8443 - 8922 361 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 134 134 143 49 4e-33 MSIEVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKV TSVGDDGKIGLSIRKAQEPAEGQQPKREFQRRENNYENRDRNPRAGGKKPFNKPQANNNN NKQDFDSLMSSFLKDSDDRLSSLKRNTEGKRGGRGGRRG >gi|308151731|gb|GL476291.1| GENE 8 8967 - 9446 500 159 aa, chain - ## HITS:1 COG:no KEGG:EF0261 NR:ns ## KEGG: EF0261 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 159 1 159 159 199 100.0 2e-50 MGKNEKNSKKVAALENDYTKEQYVEFQKQQKQLIFRRRRLAAIFLVAFIIFAFSGIQLMK DYHRLGAFKQERADAIAESVAVDKKVKDLKKDVALLKDDDYVAKLARSRFLLSKEGEQIY PTPEQMKKTQTSGAEESKSSSEKNSQSQSSTETTKSSAE >gi|308151731|gb|GL476291.1| GENE 9 9701 - 9964 388 87 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 87 17 103 105 97 71.0 7e-21 MRLDKFLKVSRIIKRRTVAKEVADKGRIQINGVLAKSSSTVKIGDLVKIQFGNRILEVEV LQLNDSTKKEDATKMYEIKSETRVSEE >gi|308151731|gb|GL476291.1| GENE 10 9979 - 10899 867 306 aa, chain - ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 18 304 243 524 529 125 29.0 9e-29 MPQTTVLFKRLMIEGGLVSLYSAFLILFQLIDSFKVKNALMLFGLSDLAAKVDKGVYDRG QPLVQLGLVIALALSSTFLPGLTKYFMKKDRQQFLQVAKIFLRLTTTLASAASIGLMMLL PYMNFTLFKDYKGNDVLGVYVLSIAFMAIIQTYQSIEQSRNRFKGPLVAAGVGLLVKLLT TGFFTIRWGTLGASWSTILGLLATLFVLVRQSDAAINCFVRERNFLKKLLLSLAIMMLSL LVYQGIISILFQGVHHRSQAFFVTVLGVAVGGTVFISTIIKLELFTIREWLSLPYGAKIL RMRQKK >gi|308151731|gb|GL476291.1| GENE 11 10915 - 11568 795 217 aa, chain - ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 213 1 215 529 184 50.0 8e-47 MAQKEMQRMMQGAVVLTIASFIAKVLSAFYRVPFQNFVGDEGFYVYQQVYPIYGIAMTLA LSGLPQFISKIVAEQPDIRSQKQVLRQLYPYVLWLAIACWAFFFFGSQEIAISMGDAALQ PLMEVVSFTFLLVPILSFYRGNFQGHLLMVPSGISQVMEQFVRVGVILVAALSYHYFGGS IYQTGTVAMSGALAGGVLAVLVLWYYNRKILSGSTEY >gi|308151731|gb|GL476291.1| GENE 12 11584 - 15123 3741 1179 aa, chain - ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 27 1166 28 1168 1179 1182 53.0 0 MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMT RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQKTTLLDYL PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ KVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT GRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT ISLKLPKDCKEAVWIQEIATFTTALRQEKYKHSQETDSL >gi|308151731|gb|GL476291.1| GENE 13 15143 - 15709 672 188 aa, chain - ## HITS:1 COG:SP0005 KEGG:ns NR:ns ## COG: SP0005 COG0193 # Protein_GI_number: 15899954 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 187 3 189 189 223 57.0 2e-58 MKVIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVK PLTFMNESGRSVGPLLTYFGVDEEDLIVIYDDLDLEVGKIRLRQKGSAGGHNGIKSLIAH LGTNVFPRIKIGIGRPSKNDTVIHHVLSIFPKETHEEMLLAVKKAADAALYACEGHTFVE TMNQFNGK >gi|308151731|gb|GL476291.1| GENE 14 16045 - 17028 1200 327 aa, chain + ## HITS:1 COG:SPy1151 KEGG:ns NR:ns ## COG: SPy1151 COG0039 # Protein_GI_number: 15675128 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 6 326 3 324 327 473 75.0 1e-133 MTAAAGNKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIIDINVPKTEGDALDLSHALA FTSPKKIYAATYDDCHDADLVVLTAGAPQKPGETRLDLVHKNLKINKEIVTTIVDSGFNG IFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQAIAELVDVDARNVHAYILG EHGDTEFPVWSHANVAGLQIYEWVKNNPDVDEEAMVNLFFNVRDAAYTIIEKKGATFYGI AVALARITKAILNDENSVLPLSVYLEGEYGQNDIYIGAPAIINRQGVKQVIEIPLTDAEQ EKMEASASALKEVIETAFAKFEAEEAK >gi|308151731|gb|GL476291.1| GENE 15 17255 - 18745 1650 496 aa, chain - ## HITS:1 COG:FN0454 KEGG:ns NR:ns ## COG: FN0454 COG1012 # Protein_GI_number: 19703789 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Fusobacterium nucleatum # 6 496 1 491 491 622 60.0 1e-178 MSKKEINQVVASSYQLYINGEWTTGSGNKMIASYNPSNGEKLAEFVDATNADVDRAVEAA QEAFQTWKDVDVVTRSNLLLKIADLIEENQEHLAMVETLDNGKPLRETQSIDVPASADHF RYFASVIRGEEGSVKEFDKDTLSIVVKEPIGVVGQIIPWNFPLLMGAWKLAPALAAGNTV VIHPSSSTSLSLLELFKIFDQVLPKGVVNLITGRGSDSGNYMLAHPGFDKLAFTGSTEVG YTVAKAAADRLIPATLELGGKSANIIFEDANWERALEGVQLGILFNQGQVCCAGSRVFVQ SGIYDQFVEALKEKFEQVNVGFPWEKDVEMGAQINEHQLEEILKYVEIGVKEGATLITGG QRLTENGLDKGAFLAPTLLANGTNTMCVAQEEIFGPVATVIKFETEEEVIRLANDSEYGL GGAVFSQDINVALRVARGVRTGRMWVNTYNQLPAGAPFGGYKKSGIGRETHKSMLDAYTQ MKNIYIVTKEEADGLY >gi|308151731|gb|GL476291.1| GENE 16 19023 - 20528 1650 501 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 27 364 149 475 502 155 31.0 3e-37 MKKQFALFSTLLLLGSSMPVGAFAEGNNLVAENSSVAETTAEATTAEATETTATSETTEA TEESTTETESSTEPSESTTTESTETSGTETTDSTTDSTSTSTTESTTDSTSTSTTESTTD STSTSTTESSTTPTTTPSSSKEQPKPGTSTSESKQPAKPVTPTAPAEKPVEQPAASTPQP EIVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILE SGSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMED YAKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGKYATDKDYHKKLNALIKTYDLTYY DKEKATVEPMESNFPAYNGKNYDTFNSYAWGNCTQYVYNRITQLGKRVDLTMGNGQDWGE TGRARGYKVSRTPKAGAAVSFPAGVLGADNTYGHVAFVEKVFKDGSILISEMNVKGLNVV STRTISADETHLMNYIVPKDK >gi|308151731|gb|GL476291.1| GENE 17 20763 - 21275 647 170 aa, chain - ## HITS:1 COG:SPy1427 KEGG:ns NR:ns ## COG: SPy1427 COG1827 # Protein_GI_number: 15675342 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 173 135 41.0 3e-32 MDGEIRRREIVKRLRETEKPISATRFAKAFDVSRQIIVGDVALLRATGVEIVATARGYML EQPLEGIERKIACQHTPEQTREELSVIVAKGGEVVDVSIAHPLYGELIGSLRIQSEKDID KFMDKYQKEHATLLSVLTGGVHLHTIRCADEETFQEIKEALRKKSILFEG >gi|308151731|gb|GL476291.1| GENE 18 21286 - 22131 902 281 aa, chain - ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 6 185 3 183 183 216 57.0 3e-56 MEEFKSEKEKMIAGALYFASDPELVADRKKAREQMALINQQPDTYIRRQLIEETFGKVGV GTYIEPMIQFDYGYNISVGKNFYANFNNVFLDVCPIEIGDNCMFGPNVQLYTAEHPLQAA KRNSGMESGKRIIIGNNVWIGGGAIVLPGVTLGDNVVVAAGAVVTKSFPENCVIAGNPAR IIKELTEDDAPTTSLEQQRAKINQIDKELVRLLEQRMDVVAEIAAVKKKAGHAVFDSERE QQVLETILNHVENAEYEETLSETFQGIMDASKRFQEKHLGE >gi|308151731|gb|GL476291.1| GENE 19 22136 - 22849 690 237 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 17 233 12 229 229 268 55.0 6e-72 MQDITQAEAIHWLATQQKITFLTGAGISTASGVPDYRSLKGVYQGIQQPEYLLSRTCLKT EPEKFYQFVKTLYHPDAQPNIIHQKMAQLEQMKRGKIVSQNIDGLHRKAGSQEVVDFHGN LYECYCQTCGATVPWQDYLLSDRHADCHGQIRPAITLYEEGLSEEAIEKAIQAVASADLI VIVGTSFQVHPFCDLIHYKQPTATILAINQTPLFLQQPYYFLEAKAETIFAELTIKE >gi|308151731|gb|GL476291.1| GENE 20 23022 - 23318 364 98 aa, chain + ## HITS:1 COG:no KEGG:EF0248 NR:ns ## KEGG: EF0248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 134 100.0 1e-30 MVAFIIYWAAIIACIAWGVLSIWFSVFYLSRKENGNLWAFAFFNVIAIIALAIVLLVYKT WDFGILTYSSLIYTILASLGVLTVLQAILGREPKAVKA >gi|308151731|gb|GL476291.1| GENE 21 23877 - 25460 2083 527 aa, chain + ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 287 510 2 221 239 300 65.0 5e-81 MNKKVFSFSLLLVTLFSLLGMTTNASAEENGEFRVGMEAGYAPFNWSQKNDAHGAVPIQG NSYAGGYDVQISKKIADGLGRKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERKKEIA FTNPYYESQFVVIVKKDGKYANAKNLKDLADAKITAQLNTFHYGLIDQIPNVNKQQAMDN FSAMRTALASGMIDGYVSERPEGITATSVNKELKMLEFPKENGFDASAEDSQVAVGMRKG DPDIEKVNKILAGISQDERTKIMDQAIKDQPAATDSDEQKTGLINDFKNIWNQYGDMFLR GAGLTLFIALIGTVVGTTLGLLIGVFRTIPDSENPVARFFQKLGNLILSIYIEVFRGTPM MVQAMVIFYGLALAFGISLDRTVAALFIVSVNTGAYMSEIVRGGIFAVDKGQFEAAQAIG MTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNAASGANFQFF QTFTIVGIMYLVMTFVITRILRVVERKMDGPSAYVKVEELTEEGKES >gi|308151731|gb|GL476291.1| GENE 22 25472 - 26212 279 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 226 1 223 305 112 30 1e-23 MSAIIEIEHLRKSFGENEVLKDINMNVNKGEVVTIIGSSGSGKSTLLRCINLLEKPTDGK IIYNGKNVLERGYSLPKYRTHLGMVFQSFNLFNNMNVLENCTSGQMTVLKRNKEEAKKIA LENLEKVGMARFIDAKPAQLSGGQKQRVAIARALSMDPDVLLFDEPTSALDPEMVGEVLK TMKNLAHTGLTMVIVTHEMEFARDVSDRVIFMDKGVIAEEGTAEDIFVHPKEARTKEFLH RILTKN >gi|308151731|gb|GL476291.1| GENE 23 26257 - 26826 612 189 aa, chain - ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 204 51.0 6e-53 MKKMAVYCGASLGNEPIYQQAAVALAAWMKENHYDLVYGGGNVGLMGAVADTLLAEGGEV IGVMPTFLMEREIAHNGITKMHTVSDMHARKKKMIELADVYLALPGGPGTLEEISEVISW GRVGEHMNPCILYNVNGYYDLLAAFFDKMVETNFLTAADRAKIFISDSLEEIGAFIDSYE PPMIRQYKK >gi|308151731|gb|GL476291.1| GENE 24 27015 - 27506 412 163 aa, chain + ## HITS:1 COG:lin2246 KEGG:ns NR:ns ## COG: lin2246 COG0454 # Protein_GI_number: 16801311 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 161 1 157 157 105 35.0 3e-23 MSTSLTIRLVAEADWPALHALDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQ LAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQGQGIGGSLLSYVKDMAQISGIHKLSLRVM ATNQEAIRFYEKHGFVQEAHFKEEFYINGHYCDDYQYAYFIEK >gi|308151731|gb|GL476291.1| GENE 25 27597 - 28952 1641 451 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 428 1 428 449 457 59.0 1e-128 MQKKLVWRDYLYVGSMLFGLFFGAGNLIFPVHMGQEAGASVFLANLGFLATGIGLPFLGV IAMGVSKSSGVFDLASRINRRYALIFTLLLYLTIGPFFALPRLATTSFEIGLAPFVPKDL QWLVLAGFSALFFLAVWLFSRKPSKILDYVGKFLNPLFLALLGILIVLAFVKPLGHVASA AVGENYISSPFFKGFTEGYNTLDALASLAFGIVVVSTLRNMGVEKPGDIAKGMIKSGAFS VVLMGVIYTLLAYMGTMSIGAFPISENGGIALAQIANYYLGLPGSILLAFIVVLACLKTG IGLSTAFSETFEEMFPKVSYQKFLAIVVILPAIFANVGLTNIIQFAVPVLMFLYPLAITL MLLVIISPIFKHRREVYQATTYITLIAAVLDALNSAPAFIKDTAFVTTLLEKAGQYLPLF TIGMGWVVPATVAFLISWVWVMISKKDPILD >gi|308151731|gb|GL476291.1| GENE 26 29085 - 29396 543 103 aa, chain + ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 5 104 108 92 53.0 1e-19 MLVTTTERISGQEYEIIGEVFGLTTRSKNMFKDLGAGLKSVVGGEIKGYTDMQREARDQA IERLKAEASKLGADAVVMMRFDSGTIGTDMQSVVAYGTAVKYI >gi|308151731|gb|GL476291.1| GENE 27 29447 - 30196 860 249 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 248 1 248 249 320 63.0 2e-87 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG QVIHFDYPQERPLEKMRFALDTQTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIGKP RSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHVNE TGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGL YLAEVKYEN >gi|308151731|gb|GL476291.1| GENE 28 30215 - 31009 750 264 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 318 63.0 6e-87 MNKLIFGRYIPGDSFIHRLDPRAKLLASFYFIGIIFLANNWQSYVLIAAFTAFAISLSKI SARFFIRGVRPLLWLILFTVALQTLFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLII FMSTLLTLTTAPLELSDAIEYLLRPLRVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNA QRARGVDFGEGNLLQKMKAIVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILH WHLRDTIVMFGFVLLTIGLFVLRT >gi|308151731|gb|GL476291.1| GENE 29 31009 - 31878 440 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 278 132 396 398 174 38 3e-42 MDIRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPT KGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEE AKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG RKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRAGAPQEVFQETQWL KEKQLGVPTAAEFAEKLVAKGFSFEQLPLTADQLADQLLKKMQEAGEAK >gi|308151731|gb|GL476291.1| GENE 30 31854 - 32693 1154 279 aa, chain - ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 272 1 272 277 317 58.0 2e-86 MQPIIELNNIQFNYQPEDASPALKDVSFSIQQGEWVAIIGHNGSGKSTLAKTINGLLLPA AGTIKVGGKELNEANVWDIRRMVGMVFQNPDNQFVGSTVEDDVAFGLENQGIPRDEMVER VHDALERVRMLDFAKREPARLSGGQKQRVAIAGVVALRPDIIILDEATSMLDPEGRAEVI ATIQKIKEESNLTVISITHDIDEAANANRILVMRQGQLTNEGTPEKIFSAGEALVEMGLD LPFPEKLKVALKERGVVVPTNYLTEEGMVDWLWTSVLNK >gi|308151731|gb|GL476291.1| GENE 31 32895 - 34070 1256 391 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 387 4 388 393 565 71.0 1e-161 MKKIKALVKQHAQEMIAFRRDLHQHPELQFEEFRTTEKVAAVLDQLGITYRKTEPTGLIA EIVGGKPGRVVALRADMDALPVQELNEDLAYKSLEAGKMHACGHDSHTAMLVTAAKVLKE IQEELQGTVRLIFQPSEENAQGAKAMVAQGAMTGVDDVFGLHIWSQMPVGTASCRVGSSF ASADIFSVDFKGRGGHGAMPNACIDAAVIASSFVMNLQTIVSRETDPLDPVVVTIGRMDV GTRFNVIAENARLEGTVRCFSVATRNRVEQALQRYAEQTAAIYGGTASLDYQYGTLPVIN DEQDALFAQTLIKENFGEAALRQEEPTTGGEDFSYYTEHASGCFALVGSGNPEKDTEWAH HHGRFNIDEDAMAMGAELYAQYAFEYLKTHF >gi|308151731|gb|GL476291.1| GENE 32 34086 - 35285 1296 399 aa, chain - ## HITS:1 COG:no KEGG:EF0235 NR:ns ## KEGG: EF0235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 399 1 399 399 659 99.0 0 MSQMFAFSLLMVILYIGDVVSIKTKAWIPSVFVCGVLFILGYWTIFPQNIVEVAGIPTVV ATLLMYLLITNMGTLLSVKELVNQWKTIVIALSGILGIIALLLAVGTFIFDLKTVLVAIP PLVGGLVSSLVMSEAAQSAGLASLSVLAILIYVIQGFAGYPLTSIVLKKEGKRKLQEYRA GTWQPVHEQEGQETGAEPDVPKLFEKVPKRYHTDYSRILRLALVATLAYYVSVWTAPFVT ISPFVLCLCFGVIATSLGFLEKQPLQKANSFGFAILGLMLFVFDGLKQATPEMLMDLFLP MIGIIVIGVIGMYIFSAIVGRVLGVSKEMAFAVSLTALYGFPADYIITNEVIQSLTEDEQ EQAALTSHLMPPMLVAGFVTVTIVSVILAGIFSSILLSL >gi|308151731|gb|GL476291.1| GENE 33 35560 - 35943 618 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 [Enterococcus faecalis V583] # 1 127 1 127 127 242 99 7e-63 MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARR QAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPM VVIEFVK >gi|308151731|gb|GL476291.1| GENE 34 36017 - 36955 1076 312 aa, chain - ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 431 74.0 1e-121 MIEFEKPRIEKIDENRDYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAITNIQIDGVL HEFSTIPGVREDVTQIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILN KDLVICSVAEGATFHARLTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVRRVNYQVEN TRVGRRDDFDKLTMEIWTDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAEIMVEKEE TQKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKVRNLGRKSLEEVKLK LHDLGLGLRKDD >gi|308151731|gb|GL476291.1| GENE 35 37036 - 37425 654 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 [Enterococcus faecalis V583] # 1 129 1 129 129 256 100 5e-67 MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTP FAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|308151731|gb|GL476291.1| GENE 36 37453 - 37818 606 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 [Enterococcus faecalis V583] # 1 121 1 121 121 238 100 2e-61 MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEI DKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKK K >gi|308151731|gb|GL476291.1| GENE 37 37838 - 37954 210 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 [Enterococcus faecalis V583] # 1 38 1 38 38 85 100 1e-15 MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG >gi|308151731|gb|GL476291.1| GENE 38 37987 - 38205 311 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 124 81 3e-27 MAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGDKVTVELSPY DLTRGRITYRFK >gi|308151731|gb|GL476291.1| GENE 39 38416 - 39066 829 216 aa, chain - ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 1 213 1 214 215 300 68.0 9e-82 MNLILMGLPGAGKGTQAEKIIDTYGIPHISTGDMFRAAMKNETALGLEAKSYIDKGELVP DEVTNGIVKERLAEPDTDKGFLLDGFPRTLDQAKALDTMLKELNKKIDAVIDIHVEEDVL IERLAGRFICRTCGATYHKLFNPPKVEGTCDRCGGHEFYQREDDKPETVKNRLAVNIESS APILAFYKEQGLMHTIDGNREIDTVFSDVKKIIDEN >gi|308151731|gb|GL476291.1| GENE 40 39153 - 40451 762 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 432 19 439 447 298 38 1e-79 MFKLLKNAFKVKDIRSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVS GSAMQNFSIFSMGVSPYITASIIIQLLQMDIVPRFVEWSKQGEVGRKKLNQATRYLTIVL GVAQSMGITAGFNSLSQTGIVNNPTLGTFVMIAVILTAGTMFVTWMGEQITEKGIGNGVS MIIFAGIISRLPGAVKEIYEDYFVNIESSRIWQSVIFIAILVIAILVIVTVVTFFQQAER KIPIQYTKRVSGAPTSSYLPLKVNAAGVIPVIFASSLIATPNAILQAFSSKFAGENWYDI MTKIFSYNTVPGAIIYTVLIVAFTFFYAFVQVNPEKLAENLQKQGSYIPSVRPGKGTEEY VSGVLMRLSVVGSIFLGLVALLPIIAQMVWNLPQSIGLGGTSLLIVIGVALETTKQLEGL MMKRQYVGFINK >gi|308151731|gb|GL476291.1| GENE 41 40452 - 40892 731 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 [Enterococcus faecalis V583] # 1 146 1 146 146 286 100 6e-76 MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRR LPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKK LTVKAAKFSKSAQEAIEAAGGSIEVI >gi|308151731|gb|GL476291.1| GENE 42 40940 - 41119 286 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374869|ref|NP_814022.1| ribosomal protein L30 [Enterococcus faecalis V583] # 1 59 1 59 59 114 100 2e-24 MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV >gi|308151731|gb|GL476291.1| GENE 43 41134 - 41634 817 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374868|ref|NP_814021.1| ribosomal protein S5 [Enterococcus faecalis V583] # 1 166 1 166 166 319 100 6e-86 MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAI RKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGV ADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEIIG >gi|308151731|gb|GL476291.1| GENE 44 41655 - 42020 599 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 [Enterococcus faecalis TX0104] # 1 121 1 121 121 235 99 1e-60 MKIVITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASAS ALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE F >gi|308151731|gb|GL476291.1| GENE 45 42172 - 42708 909 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 [Enterococcus faecalis TX0104] # 1 178 1 178 178 354 99 1e-96 MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKE MKTIHGTTRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEG VTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKTGK >gi|308151731|gb|GL476291.1| GENE 46 42740 - 43138 660 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 [Enterococcus faecalis V583] # 1 132 1 132 132 258 100 9e-68 MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVI RVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KNIGGEVIAYVW >gi|308151731|gb|GL476291.1| GENE 47 43174 - 43359 333 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 61 1 61 61 132 98 8e-30 MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKAS W >gi|308151731|gb|GL476291.1| GENE 48 43378 - 43917 896 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 [Enterococcus faecalis V583] # 1 179 1 179 179 349 100 4e-95 MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALI TGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKK AFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRELLAQLGMPFQK >gi|308151731|gb|GL476291.1| GENE 49 43943 - 44254 517 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 [Enterococcus faecalis V583] # 1 103 1 103 103 203 100 4e-51 MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVE APIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK >gi|308151731|gb|GL476291.1| GENE 50 44290 - 44658 591 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374861|ref|NP_814014.1| ribosomal protein L14 [Enterococcus faecalis V583] # 1 122 1 122 122 232 99 9e-60 MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKA VIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VL >gi|308151731|gb|GL476291.1| GENE 51 44716 - 45003 476 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 [Enterococcus faecalis TX0104] # 1 95 1 95 95 187 98 2e-46 MEGGQTRMTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDEN NTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII >gi|308151731|gb|GL476291.1| GENE 52 45006 - 45194 296 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374859|ref|NP_814012.1| ribosomal protein L29 [Enterococcus faecalis V583] # 1 62 1 62 62 118 100 2e-25 MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQ AN >gi|308151731|gb|GL476291.1| GENE 53 45184 - 45618 753 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 [Enterococcus faecalis V583] # 1 144 1 144 144 294 100 2e-78 MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRL ASHKLPVKTKIVKREEMGGESNEG >gi|308151731|gb|GL476291.1| GENE 54 45621 - 46277 1112 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 [Enterococcus faecalis V583] # 1 218 1 218 218 432 99 1e-120 MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAA NRVNISIHTAKPGMVIGKGGSEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIA RQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARSEGYSEGTVPLHTLRAD IDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK >gi|308151731|gb|GL476291.1| GENE 55 46344 - 46697 564 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 [Enterococcus faecalis TX0104] # 1 117 1 117 117 221 100 1e-56 MQMSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMS AVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK >gi|308151731|gb|GL476291.1| GENE 56 46713 - 46991 486 92 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 [Enterococcus faecalis V583] # 1 92 1 92 92 191 100 1e-47 MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPV YIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR >gi|308151731|gb|GL476291.1| GENE 57 47034 - 47864 1431 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 [Enterococcus faecalis V583] # 1 276 1 276 276 555 99 1e-157 MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGP EADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGE VRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK >gi|308151731|gb|GL476291.1| GENE 58 47904 - 48194 471 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374853|ref|NP_814006.1| ribosomal protein L23 [Enterococcus faecalis V583] # 1 96 1 96 96 186 100 8e-46 MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRP KFKRMGKYAGYTKKRRKAIVTLTEDSKEIQLFEAAE >gi|308151731|gb|GL476291.1| GENE 59 48194 - 48817 1033 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] # 1 207 1 207 207 402 100 1e-111 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN VSVLDVVSANKVLATQTALTQIEEVLA >gi|308151731|gb|GL476291.1| GENE 60 48843 - 49472 1059 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 [Enterococcus faecalis V583] # 1 209 1 209 209 412 100 1e-114 MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVL SNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQ GAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKVD VERNVILIKGNIPGAKKSLITIKSAVKAK >gi|308151731|gb|GL476291.1| GENE 61 49494 - 49838 576 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 [Enterococcus faecalis TX0104] # 1 114 1 114 114 226 100 5e-58 MSTFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSL YTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL >gi|308151731|gb|GL476291.1| GENE 62 49948 - 50082 48 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 [Lactobacillus fermentum ATCC 14931] # 1 40 14 54 208 23 39 6e-53 RMKRIEKQNKCFSKQEKILSKKRRKSLLTLSFHSIIKKVLFTGV >gi|308151731|gb|GL476291.1| GENE 63 50151 - 51317 1325 388 aa, chain - ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 386 8 386 391 402 52.0 1e-112 MLEKETYSQLFKWSFSKKTQVTYWDGTVKEYGQGSGDPVFKIVFNEKIPVKDLLNNASLT LGEAYMDRKIEIEGDIQALIYDVYNQKDSFLHNAKFIKWLPKESHSKKRSQEDIHSHYDL GNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDKLFIKEGDTLLDIGCGWGTL ILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGLQDRMTVKLMDYRDLKGESFDHITSVG MFEHVGAENLHEYFDVVQRNLAPKGTALIHGISRQQGGAKNAWINRYIFPGGYIPGVTEL VGHMTENDLQVIDLESLRRDYQLTLEHWTKNFHNIETEIVDEKGERFYRMWDLYLQACAA SFQASNIDVIQYLLVHPDNNDIPMRRIG >gi|308151731|gb|GL476291.1| GENE 64 51589 - 52413 1082 274 aa, chain - ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 269 3 271 271 291 54.0 1e-78 MEKVLTIAGSDSTGGAGIQADLKTFEEYGVFGFSSLTSIVTMDPTTGWSHEVTELPETLL EKQLISVFAGGPVAALKTGMMGNEQNIKMASKYIKQEKIQKVVIDPVIACKGTAQILQPK SVEGLKNDLLPLALVATPNLIEAGILAGLGEISSVAEMEEAAKRIVQMGAKHVVVKGGHR LAGEKALDLFYDGHTAHLLENELYPTDYNHGAGCTFSAAITAGLAKGYSVLEAVTLAKKF VAAAIKHGIQVNPYVGHVWHGAYIHAEQRMRKKA >gi|308151731|gb|GL476291.1| GENE 65 52594 - 53781 1486 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 577 70 1e-163 MAKEKFDRSKSHVNIGTIGHVDHGKTTLTAAIATVLSKHGGGEAQSYDSIDNAPEEKERG ITINTSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPYIVVFLNKMDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDESYEEKILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVG DEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATI TPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVAM DVELIHPIAIEDGTRFSIREGGRTVGSGVVTEIVK >gi|308151731|gb|GL476291.1| GENE 66 53932 - 56013 2272 693 aa, chain - ## HITS:1 COG:SPy0273 KEGG:ns NR:ns ## COG: SPy0273 COG0480 # Protein_GI_number: 15674452 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pyogenes M1 GAS # 1 691 1 691 692 1185 87.0 0 MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERG ITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVW RQATEYKVPRIVFCNKMDKIGADFFYSVESLHDRLQANAHPIQIPIGAEEDFTGIIDLIK MKAEIYTNDLGTDIQETDIPEDYLEKAQEWREKLVEAVAETDEDLMMKYLEGEEITEEEL VAGIRQATINVEFFPVLAGSAFKNKGVQLMLDAVLDYLPSPLDIDAIKGIDTKTDEETTR PADDEAPFASLAFKVMTDPFVGRLTFFRVYSGVLESGSYVLNASKGKKERIGRILQMHAN TRQEIDKVYSGDIAAAVGLKDTTTGDTLCALDAPVILESIEFPDPVIQVAVEPKSKADQD KMGVALQKLAEEDPSFRVETNVETGETVISGMGELQLDVLVDRMKREFKVEANVGAPQVS YRETFRAATKAEGKFVRQSGGKGQYGHVWVEFTPNEEGKGFEFENAIVGGVVPREYIPAV EKGLEDSMNNGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALKAAAKNANPVIL EPMMKVTITVPEDYLGDIMGHVTSRRGRVEGMEAHGNSQIVNAMVPLAEMFGYATTLRSA TQGRGTFMMVFDHYEDVPKSVQEEIIKKNGGNA >gi|308151731|gb|GL476291.1| GENE 67 56097 - 56567 806 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 [Enterococcus faecalis V583] # 1 156 1 156 156 315 100 1e-84 MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLE VFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERL AKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW >gi|308151731|gb|GL476291.1| GENE 68 56623 - 57036 706 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 [Enterococcus faecalis V583] # 1 137 1 137 137 276 100 4e-73 MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGV NDRKQSRSKYGTKRPKA >gi|308151731|gb|GL476291.1| GENE 69 57381 - 58061 942 226 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 2 222 3 223 224 263 62.0 2e-70 MNLKQMVGIEAAKYVEEGMIVGLGTGSTAKFMVDEIGRRVKEEGLSIVGVTTSKETEKQA LALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKS KMVDDLGAFPLPVEVVPYGSRQLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLEK ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDGPKTLHVPAR >gi|308151731|gb|GL476291.1| GENE 70 58103 - 58678 596 191 aa, chain + ## HITS:1 COG:STM2772 KEGG:ns NR:ns ## COG: STM2772 COG1961 # Protein_GI_number: 16766084 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 178 1 179 190 103 34.0 2e-22 MKRIGYARTTIIEDDLKNQLTTLQSFGCDDIFQETFDPQAEISVLDEVEKLLSAGDTLIV CKLHHLGKTTRQLTDFMKMLKEKQVDFVSISEGIDTHLPTGEAYFQLMESLSAMECALIK ERTLVGLHKARENGKVGGRPKIDGRTVRKIRALYYENKETIQFISNKCGVSVGTCYKYIN LPETDVERLYS >gi|308151731|gb|GL476291.1| GENE 71 58853 - 59539 862 228 aa, chain + ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 3 228 2 227 227 334 73.0 8e-92 MPKLVFSRHGLSEWNALNQFTGWADVDLAPEGVEEAKEGGRKIKEAGIEFDVAYTSVLTR AIKTCNYLLEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTL PPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDNKTVLVA AHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVYELNDDLTVKEKYYL >gi|308151731|gb|GL476291.1| GENE 72 59588 - 60775 1373 395 aa, chain - ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 386 1 386 389 434 55.0 1e-121 MENFNFYVPTDIRFGKDRLDELPAVLDQFGKNVLLVYGGGSIKRNGLYQQITDLAQKNGH TLIELSGVEPNPRIETVRKGIELCKENQVDVILAVGGGSTIDCSKAIAAGFYSEEDIWTV IAARKGYTGPALPIVTILTLAATGSEMNAGAVISNLETNQKLGFGGPNMIPKVSFLDPTN TFTVPQNQTAAGSADIFSHLIENYFSISTGTDVQDFVSEGLMRTVIKNCPIALENPEDYD ARANLMWASSLALNGLTGRGKQGVWSCHPMEHELSAFYDITHGIGLAILTPRWMNYVLSE QTVGKFAQFARNVWGIVEQEEEVAAKKGIQALYDYFVACGIPMTLPEVGIEADKFEEMAQ QAVDHSAIAEKAYVPLDAADIVAIYKDCLTESQFI >gi|308151731|gb|GL476291.1| GENE 73 60904 - 61908 1114 334 aa, chain - ## HITS:1 COG:SA0604 KEGG:ns NR:ns ## COG: SA0604 COG0609 # Protein_GI_number: 15926326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 10 332 14 337 338 241 41.0 1e-63 MTQKKVSRWVAILIVGIILTACISLTQGELSVSVMDLKALLLGQGSQAKQLLVWDFRLPR IVLAVLAGAALGLSGAILQGITRNPLADTGILGINAGAGLAVILFISFVETTSITTFALP LVALVGGLLAAVGILVIAYHHRLGLTPVRMVLAGVILSTGISTLTLLITSKIDTEKYRFV TMWQAGSIWGSNWFFVGALLPWLVIGFFFAMKRHRLLDILQLGDETAISVGIAVKKERIV SLLLAVMLAASAISVTGGINFLGLLAPHIARKCGFTQQKQVLPLAALFGSLLLLVSDTIG RLLPGNGEMPAGIIVAIIGAPYFLYLLIKTSDSL >gi|308151731|gb|GL476291.1| GENE 74 61905 - 62825 665 306 aa, chain - ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 3 301 38 336 341 259 46.0 3e-69 MFGATSVSIQTIIESFTHFDATNQAHQVIQTVRLPRILGAAFVGASLAVSGALAQGITQN PLADSGLLGINAGAGLGLALVFAFLPQASYWWLLVVSFLGAGVSVALIYYLSNHSIRGAS PMRLTLVGAGISALFLSFSQFLAIQFNLSQELTFWFLGGVSVISWAQLKIVVPIFLGAFA LAVLISPSVTILRFGDDATIGLGRNPQRIRLFASITILLLSGLSVALVGSVSFVGLVVPH VMRTVSGENYRRLIPFSALGGALLVLVADLIARMVNPPFETPFGIITALIGIPFFLYLFR KGGQLG >gi|308151731|gb|GL476291.1| GENE 75 62912 - 63712 259 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 227 2 226 245 104 30 3e-21 MNYLEAEDLTTGYGRQVISEALNCSFEAGTITSIIGPNGCGKSTLLKTLARILPAEKGKV FIKNQELQHFSSKEVAQELAILSQTPENTIDLSVFDLVSFGRYPYQSGWKSVTTEDQEYI QWALELTGLTELARESVAILSGGQRQRVWIAMALVQDTDILILDEPTTYLDPAHQLEILN VLKRINQEHQKTIVMTIHDINLASRFSDRVIAMKEGKIINEGTPQEVITVTGLADVFAIQ AEISYHSQTQRPLVLSYELMEMELDG >gi|308151731|gb|GL476291.1| GENE 76 63950 - 64888 1184 312 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 22 311 19 310 313 97 26.0 3e-20 MKLLKKTVLIGTTLLLGSFLLAACGNTNKEANNADKTHEVTDTLGNKVTVPAKPKRIIAS YLEDYLVALGEKPVAQWTVGQGSIQDYLAKELKDVPTISYDLPYEAVLKFEPDLLLISSS ALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVLDKKEQAKKVLEDYDTLTKGVQ EDLGKKDASKSAAVLWVTNNQVFMVSDNRSSGTVLYQDLGLQVPKLVEEISKNATADWNQ VSLEKLAELDADHIFLVNSDESAPLFQEAIWKNLPAVKNNQVHTYDKKSSWLYNGPIANT QIVEDVKKALLN >gi|308151731|gb|GL476291.1| GENE 77 64927 - 65634 975 235 aa, chain - ## HITS:1 COG:L156559 KEGG:ns NR:ns ## COG: L156559 COG0813 # Protein_GI_number: 15672913 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Lactococcus lactis # 4 234 5 233 234 311 67.0 6e-85 MSVHIEAKPGEIADKILLPGDPLRAKYIAETFLENPVCYNQVRGMLGYTGTYKGQRVSVQ GTGMGMPSAGIYAHELINSYDVKKLIRVGTCGSISEKVNVRELVIAQAAATPSSAIRNDF PKYDFPQIASFDLLLKSYEIAKAKGFTTHVGNVLSDDVFYKDSLDDVFRLGRYGVLAIEM EAAMLYYLAAKFDVEALAIMTVSDSLVTGEETTAEERQTTFNEMIEVGLETAIAN >gi|308151731|gb|GL476291.1| GENE 78 65652 - 66470 1098 272 aa, chain - ## HITS:1 COG:SPy0892 KEGG:ns NR:ns ## COG: SPy0892 COG0005 # Protein_GI_number: 15674917 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Streptococcus pyogenes M1 GAS # 3 272 2 269 269 341 64.0 7e-94 MTTLTNHLNETTEFLKEKGVQQADFGLILGSGLGELANEITDAIAIPFSEIPHFSVSTVV GHAGQLVYGTLSGKKVLAMQGRFHYYEGHSMQTVTYPVRVMAALGIHSMIVTNAAGGVNE TYTPGNLMLINDHINFTGDNPLIGENDEEIGPRFPDMSHAYTQEYREVAKKVAAEQNIDL KEGVYMGFSGPTYETPAEIRMSRTMGADAVGMSTVSEVIVAVHSGMKVLGISCITNLAAG MQSSLNHAEVVETTERVKGQFKELVKATLAAL >gi|308151731|gb|GL476291.1| GENE 79 66487 - 67653 1413 388 aa, chain - ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 2 388 5 392 392 545 69.0 1e-155 MFKRVHLIVLDSVGIGEAPDAEKFGDVGSDTLGHIAKEAGLTIPHLEKLGLGTIAPLTGV KAVADHDGYATKLEEISVGKDTMTGHWEIMGLNIKKPFRVFPNGFPEELLKQIEDFSGRK VVCNKPYSGTAVIDDYGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYKICQYVRDI TKDEPYMIGRIIARPYVGEPGNFTRTSNRHDYALDPFGHTVLDSLKENGNDVIAVGKIND IFNGQGITEAIRTKSNMDGVDQLLTVMNKDFTGLSFTNLVDFDALYGHRRDVKGYAKAIE DFDGRLPEIMAAMAEDDLLLITADHGNDPTFPGTDHTREYVPLLAYSKKMTKQGSLPQGF YSDISATIAENFEVPATENGQSFLNQLQ >gi|308151731|gb|GL476291.1| GENE 80 67955 - 68548 422 197 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 190 1 185 188 87 32.0 2e-17 MNKTRVEAFSDAVIAIIMTIMILEIKTPQVGVLAGLIENIPYFLSFIVSFIFICIAWYNH HYIMSVTHWFSKKAFWANNFWLFSMAFIPVATAWVSEFWWMRAPVYFYLVVYTVWDFAYF LLTRIIYEDNVVKDPQGAAKLRKSKSYSKATKIIHLCLFAIGYIGIYFYPPIGIGVILSE AVIWYLNVPKEGDRLEC >gi|308151731|gb|GL476291.1| GENE 81 68816 - 69769 1286 317 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 318 318 395 68.0 1e-110 MDLATISSIITQTLVYATPLILTALGGTFSERSGVVNVGLEGIMVMGAFSSVVFNLTFAD TFGAATPWIACLVGGVVGIVFSLLHAVATINLRADHIISGTVINLMAPALGVFLVKVIYQ KGQTDMITQSFGYFSFPGLSKIPVIGELFFAKTSLPAFVAILIAILAWFVIYKTRFGLRL RSVGEHPQAADTLGINVYLMRYSGVLLSGFLGGMGGAVFAQSIAGRFGITTIAGQGFISM AAMIFGKWNPLGAMGAALFFGFAQNLSIAGENLPIISEIPKVYLQAAPYVLTILVLVVFF GKSSGPKANGKNYVKTK >gi|308151731|gb|GL476291.1| GENE 82 69769 - 70902 1211 377 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 349 2 345 352 342 58.0 9e-94 MNNRSEKIRNILVPVLSVIMGFLLGAIIMVIFGYDPVAGYQAMFETAFQGKKSIGEIFVT AAPLIFTALGFSVANSAGFFNIGLSGQALCGWVASIWVALSMPDAPRMIALPVAIIVGAV AGALAAAIPGFLRAYFGTSEVIVTIMLNYILLYTGNHIANNVMKPSIMANKGITKMIGAN ASLRSPFLTSISDGSRLNIGIFLAFIFLILVWFLMKKTTLGFEIRSVGLNPFASEYAGMS SKRTIILSMMISGTLAGLGGAVQGLGTFQNFFIQNTSLSIGFDGMAVSLLGAGSSIGILL SALLFGMLKLGGQGMPLIAGVPTELVDVVIAAIIFFVGISYLIRFLLAKASGSKKEVAIV ETIEAAPDKNNQEGGDI >gi|308151731|gb|GL476291.1| GENE 83 70895 - 72463 2211 522 aa, chain - ## HITS:1 COG:SP0846 KEGG:ns NR:ns ## COG: SP0846 COG3845 # Protein_GI_number: 15900733 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 5 512 4 511 511 673 71.0 0 MSQEENVIEMRKITKEFGTFKANDQIDLQVKPGEIHALLGENGAGKSTLMNILSGLLEPT SGEIYMNGEKVNITSPTAANRLGIGMVHQHFMLVEAFTVTENIILGSEPTHGGILDRKKA KKEIEEVSKQYGLDVNPNAYIRDISVGMQQRVEILKTLYRGANVLIFDEPTAVLTPQEID ELMIILKELTDEGKSIILITHKLDEIKKVADRCTVIRRGQSIGTVNVKDVSSQQLADMMV GRSVSFKTEKKPAQPKETILSIKDLVVKESRGLDAVKNLSLDVRAGEVVGIAGIDGNGQT ELIQALAGLTKVENGSIHLNEKEITNRKPREITEMGVAHVPEDRHKYGLVLEMTLAENIG LQTYYQKPYSSTGILNYRMINKHARELIEEYDVRTPNELVPARALSGGNQQKAIIAREVD RDPDLLIVSQPTRGLDVGAIEYIHRRLIEQRDKNKAVLLVSFELDEILNVSDRIAVIHAG EIVGIVDPKETTENELGLLMAGYSLEEARAELSKVEAGETVE >gi|308151731|gb|GL476291.1| GENE 84 72669 - 73754 1541 361 aa, chain - ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 39 359 35 350 350 297 58.0 3e-80 MKKAKLFGFSLIALGLSVSLAACGGGKGKTAESGGGKGDAAHSAVIITDTGGVDDKSFNQ SSWEGLQAWGKEHDLPEGSKGYAYIQSNDAADYTTNIDQAVSSKFNTIFGIGYLLKDAIS SAADANPDTNFVLIDDQIDGKKNVVSATFRDNEAAYLAGVAAANETKTNKVGFVGGEEGV VIDRFQAGFEKGVADAAKELGKEITVDTKYAASFADPAKGKALAAAMYQNGVDIIFHASG ATGQGVFQEAKDLNESGSGDKVWVIGVDRDQDADGKYKTKDGKEDNFTLTSTLKGVGTAV QDIANRALEDKFPGGEHLVYGLKDGGVDLTDGYLNDKTKEAVKTAKDKVISGDVKVPEKP E >gi|308151731|gb|GL476291.1| GENE 85 73808 - 74881 1378 357 aa, chain - ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 23 356 22 350 350 291 53.0 1e-78 MKQAKFLGLGLVAVALTIGLAACGGNSKKNANTKGDPQHSVVMVTDTAGIDDKSFNQSAW EGMQEWGKEHKLPEGPQGYAYIQSNEASDYTSNIDQAISSQFKTIFGIGYLLKNAVVDAA DANPETNFVLIDDTVNGKNNVASATFRDNESAYLAGVAAANTTKTNKVGFIGGVEGPVIG RFQAGFEEGVADAGKKLGKDIQITSTYAGTFADASKGRALASSMYQAGADIIYHAAATTG QGIFQEAKALNETGSKDKVWVIGVDRDQNEDGKYTTKDGKDDNLTLASTIKGVNIAVKKI SDLALEDKFPGGEHLTYGLKDGGVDLTTEALSDQAKTAVKEAKEQIISGDVKVPDQP >gi|308151731|gb|GL476291.1| GENE 86 74977 - 75372 419 131 aa, chain - ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 6 128 5 127 129 171 67.0 4e-43 MTVKQEWLDCAVEALAHAYVPYSNFPVGACLVTTDGKMYQGVNIENASFGLTNCAERTAI FKAISEDERTFQHLVVAGNTEAPISPCGACRQVMAEFFDPQMPVTLVGKDGATKTMTVEA LLPYSFTDKDF >gi|308151731|gb|GL476291.1| GENE 87 75410 - 76072 943 220 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 216 1 215 220 282 68.0 4e-76 MELNRMIDHTILKPEATEAAVQKIIDEAKEYNFFSVCINPCWVAFASEQLADTDVAVCTV IGFPLGANTPEVKAYEAADAIKNGANEVDMVINIGALKSQQYDYVRQDIQGVVDAAKGKA LVKVIIETALLTDEEKVKACELAKEAGADFVKTSTGFSTGGAKVADIRLMRETVGPDMGV KASGGVHNAEEALAMIEAGATRIGASTGVAIVSGATGEGY >gi|308151731|gb|GL476291.1| GENE 88 76100 - 77401 1783 433 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 541 69.0 1e-154 MRMVDIIEKKRDGHQLTSEEIQFIINGYTDGSIPDYQVSAFLMAVFYQDMTDEEITQMTL AMVHSGEIVDLSSIEGIKVDKHSTGGVGDTTTLILAPLVASVGVNVAKMSGRGLGYTGGT LDKLEAIPGFKVELTEERFIQLVNDTKVAVIGQSGDLAPADKKLYALRDVTATVDSIPLI ASSIMSKKIAAGADAIVLDVTTGEGAFMKDLASARRLAETMVRIGKLANRQTMAVISDMS QPLGEAIGNSLEIVEAIETLQGNGPEDLVEMCYVLGSQMVVLAKKAETLDEARALLEEAL TSGRALAKFKEMIENQGGDSSVVDQPEKLLTATYQFDLPAKETGVVQKIVANEIGVAAML LGAGRATKEDTIDFAVGLKLHKKVGSPVEKGESLLTIYANREDVTEVEQLLYKNIEIGPT GEEPILIHDIITE >gi|308151731|gb|GL476291.1| GENE 89 77542 - 78549 982 335 aa, chain - ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 335 1 333 336 320 47.0 2e-87 MKLTIKEIADMAGVSVTTVSQILNNKGSRFSEKTRNKVLAVFAENHYKPDYFASNVINRH SKTIGMIVPDVTDFFFSKVIEGVETYLNSLGYMILLCNSKHDSEQAMQYVSELIHRSVDG IIFATPNVLPENHILKDRREHPIPVILVDRGINPRDSGRLIVKEYEGAYQAVHHLIQQGH QHIGMLRESAGYYRLTERVTAYQHALQDNNLPFRPHYVCAGELNLHGGYAAAKEVLKNEE ITAIFCGNDEMAMGAYQAIEEAGKKIPDDISVVGFDGLEISEYLVPSLTTVYQPSFDIGY YAAKFLVEAIADPTGKVPNKVFDATFIARKSTKPI >gi|308151731|gb|GL476291.1| GENE 90 78709 - 79722 937 337 aa, chain + ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 6 335 15 347 352 289 43.0 6e-78 MEESRVRQLPKIELHCHLDGSIRPTTLRTIAEKQNIPLPQDEQALKELVVAPEKCTDLND YLTRFDFVLTCLQTAEALQAAAYDVISQAAEDGVAYIEVRFAPSQHTEKGLRLPEIVTAV LTGLKQGEEDFGVKSNALLCGMRHDQQQAIEKIVHLAHDFRETGVVGFDLAGNEVDFPPY TFEDVLALANQLSIPLTLHAGECGCGKNVADAVTLGATRIGHGIALKDTPEYLALLKEKK VLLEMCPTSNFQTGTVKTLAEYPFQQFIEAGLAVCINTDNRTVSDTTLTKEFMKLATWYQ LSYDEMKQLTKNALAGAFLSPDEKKLLNQKIDQAYLF >gi|308151731|gb|GL476291.1| GENE 91 79755 - 80363 783 202 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 199 4 200 201 229 57.0 2e-60 MANHYYTENPELAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPA GRLLDVGCGYGPIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYET LNETTYAAIVSNPPIRAGKKVVHGILTGAFPLLKVGGTLTVVIQKKQGAPSAEKKMAEVF GNVEIVTKDKGYYILRSVKEAE >gi|308151731|gb|GL476291.1| GENE 92 80378 - 80965 716 195 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 191 8 189 191 103 40.0 2e-22 MRKIVLFGDSITAGYLDEAVSPVLVDLVKRDIVAMGLEEVAVINAGMPGDTTEDGLKRLN KEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRR PERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGA LIVREIKGRLKPKQA >gi|308151731|gb|GL476291.1| GENE 93 81120 - 82043 986 307 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 347 56.0 1e-95 MDDKMNYYPISREEWHGFYHDGKAPLTEAELDNIKSVNDQISLKDVQEIYVPLTHLIHLY MKEFESLTLSKGLFLHEYVSVPPFIIGIAGSVAVGKSTTARLLQRILARTFKRRNVQLIT TDGFLYPNKVLEEQGIMDRKGFPESYDMEKLINFLNEVKSGKDEIKAPVYSHSVYDVIEG EYELIQQPDILIVEGINTLQLPANQQIYVSDFFDFSIFVDADPALIEKWYLERFGALLDT AFLDPNNYYYQYAIGKREDAFAMARNVWKTVNLPNLEEYILPTRGRADIILHKTENHLID QIYLRKY >gi|308151731|gb|GL476291.1| GENE 94 82355 - 83917 1813 520 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 520 1 316 316 565 86.0 1e-161 MTNVADLTSVEKIIVLDFGSQFNQLITRRIREFGVFSELLSHRTTAEEIRKIAPKGIIFS GGPNSVYDKDAFSIDPEIYELGIPILGICYGMQLMTHNLGGKVEPAANREYGKAELEILG DATLFQGTPAKQTVWMSHGDLVTEIAPGFEKVGTSNDCPIASIEDANRKFYGVQFHPEVR HSEYGNDLLRHFAFDVCGCTGDWSMENFIDMEVAKIREQVGDKKVLLGLSGGVDSSVVGV LLQKAIGDQLTCIFVDHGLLRKGEAEQVMESLGGKFGLNIIKVDAKERFLSKLVGVSDPE QKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQGTLYTDVIESGTETAQTIKSHHNVGGLP EDMQFELIEPLNTLFKDEVRALGTELGMPDAIVWRQPFPGPGLGIRVLGEITEDKLQIVR DSDAILREEIAAAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVTSIDGMTADF ARIPWDVLQKISVRIVNEVAHVNRIVYDITSKPPATVEWE >gi|308151731|gb|GL476291.1| GENE 95 83985 - 85178 841 397 aa, chain - ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 6 363 3 365 368 165 31.0 1e-40 MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLLMKPEELSEN KDKMTFNHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLK LSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVI SLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWKDIDFDSGVLTINKTLYYKNQSDYR FVEPKTKASVRHIVLDECTLNYLSKWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIERYA KLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVAN KLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ >gi|308151731|gb|GL476291.1| GENE 96 85205 - 85405 245 66 aa, chain - ## HITS:1 COG:no KEGG:SAV0393 NR:ns ## KEGG: SAV0393 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 66 1 66 66 115 98.0 6e-25 MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHTYYQSRKLDRVPREAVEEILGIRFS NENRSE >gi|308151731|gb|GL476291.1| GENE 97 85485 - 85688 107 67 aa, chain + ## HITS:1 COG:no KEGG:CD0510B NR:ns ## KEGG: CD0510B # Name: orf5 # Def: conjugative transposon protein (partial) # Organism: C.difficile # Pathway: not_defined # 6 55 1 50 61 69 68.0 3e-11 MTREEYPSNRTALAKLTGISPLHDFHVAVPIVCDATNARTVAIREYHYHDKKVMATILLK IVYEVLT >gi|308151731|gb|GL476291.1| GENE 98 85901 - 86131 250 76 aa, chain - ## HITS:1 COG:no KEGG:smi_1339 NR:ns ## KEGG: smi_1339 # Name: pnpA # Def: polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) # Organism: S.mitis_B6 # Pathway: not_defined # 1 76 1 76 76 136 93.0 3e-31 MKTTYPKLPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRG RMETKLITKILAFEIK >gi|308151731|gb|GL476291.1| GENE 99 86128 - 86550 313 140 aa, chain - ## HITS:1 COG:no KEGG:SAV0395 NR:ns ## KEGG: SAV0395 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 140 21 160 160 238 92.0 5e-62 MKPSSFQETIENQFDYICKQAIEDERKDYFKHLSRLSKKEVSFSEIDNYLVTSFSTVDTY VTDFQLFTLYGLRINVESDLLSEALRHLPENKRNIILLHYFMDMSDVEIAELLNVNRSTV YRHRISGLAMIKEFMKECKE >gi|308151731|gb|GL476291.1| GENE 100 87081 - 87434 315 117 aa, chain + ## HITS:1 COG:no KEGG:smi_1336 NR:ns ## KEGG: smi_1336 # Name: not_defined # Def: transcriptional regulator, Tn916 # Organism: S.mitis_B6 # Pathway: not_defined # 1 116 1 116 117 205 93.0 6e-52 MRKKEDKYDFRAVGLAIKEARIKRGLTREQVGTIIEIDPRYLTNIENKGQHPSTQVLYDL VSLLHVSIDEFFLPTDNLIKSTRRLQIEKYMDNFTDQELSLMEALAIGINEARNIKD >gi|308151731|gb|GL476291.1| GENE 101 87602 - 87676 80 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVTGCFALSVAIKLELNYFKLRY >gi|308151731|gb|GL476291.1| GENE 102 87790 - 88566 585 258 aa, chain - ## HITS:1 COG:no KEGG:CD0824 NR:ns ## KEGG: CD0824 # Name: not_defined # Def: putative lantibiotic ABC transporter permease # Organism: C.difficile # Pathway: not_defined # 1 245 1 247 260 236 52.0 5e-61 MFQLIITEFIKLKRQSIIWIGIIAVFISAILAAFQSNSNEGDVTYEVFYNNVIWNNFSLA FPFMIVLIGGYLINREYTDQTLKTMLTVPVSFRKMLIGKMIVIGILSLLFGIASFIISIL LSMIFGFGGFSAPILFKALYQITAIGFFNYLAVLPIIAYFSRKKDSFFAGVGLAFFYGVC GIFAAGRNLNDVYPITSGLGLTQYTNIDLSATNPIIGISSLMLMIFLTALLIFKSPKYEK VMAGSEKKTRRKEKRKKA >gi|308151731|gb|GL476291.1| GENE 103 88581 - 89339 457 252 aa, chain - ## HITS:1 COG:no KEGG:CD0823 NR:ns ## KEGG: CD0823 # Name: not_defined # Def: putative lantibiotic ABC transporter permease # Organism: C.difficile # Pathway: not_defined # 1 251 1 252 253 157 45.0 6e-37 MLDLVICEFAKLKRLKFVQLSILAAFLFPIPITFFMYADGMTFDHLFRANFMYGSLLLLP CVLGIVASMLFFMEQDNETLKNLVTIPVSRESIVLAKLAVIIILSIVYSVANLFVSILGG LIVSGVEDILYRLLISILLGILIGIATLPIILVIVYFNKSFIFSIIVSFLYASTGFAITL FFSASPESINAVASILPISIVFKWYLTLFPVEEALSYVLPYTSSTLETFIIMVIYAVVFV SLSAIVYKKNEI >gi|308151731|gb|GL476291.1| GENE 104 89332 - 90255 265 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 6 303 12 310 318 106 27 6e-22 MSNYIIETKNLTKQYGEQKSVANLSIHVRKGSIYGLLGRNGAGKTTTMKMLLGLTKPTLG EAKIFNQDIKNDMKSILPRVGSLIESPGFYPNLTGTENLKIFARLRGVPNQEAVRNVLDL VGLPYNDKKLFSQYSLGMKQRLAIALTLMHDPEVIILDEPINGLDPIGIAEIRSFIRDLC DKQGKTILISSHILSEIEQLADDIGIINNGELLEEGSLEELKQKNNKYIHFIVSNTSEAA LILENDFQISDFQIIDNRQLKIYDTSLSVATINRTFILRDLEVSEARLQEDTLEDYFKRV TGGVGIA >gi|308151731|gb|GL476291.1| GENE 105 90378 - 91304 380 308 aa, chain - ## HITS:1 COG:CAC0831 KEGG:ns NR:ns ## COG: CAC0831 COG0642 # Protein_GI_number: 15894118 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 16 293 66 351 366 123 32.0 4e-28 MEMLIPLFIVAFICSVMLNLIFIMKITRFKQQIHHISQVLSDIKQGNSKRRILVKNHELV ASLAFKMNEIVYHYDNQLINLKKNEELNKHLMTSLSHDVRTPLTTLIGYLHAVRKGIVTG QEKDSYIDIACRKAGDLKEYTDELFDWFKIQSDDYPFTFEETDITEMTRSILIDWIPIFE EAKIDYDFAIPEQKILAMIDRESYRRVINNLVQNIIAHSHATEISLTIKKQSNMLTIRIK DNGVGISSEDLPHIFENLYTGDKSRSNKGSGLGLAIVQQLIQKMDGSISVQSELNDGTIF FITLQTTS >gi|308151731|gb|GL476291.1| GENE 106 91308 - 92003 645 231 aa, chain - ## HITS:1 COG:CAC0564 KEGG:ns NR:ns ## COG: CAC0564 COG0745 # Protein_GI_number: 15893854 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 231 6 233 233 181 42.0 1e-45 MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD GFQVLEKIRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRY TNFNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQI FEKVWQEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRFSKDV >gi|308151731|gb|GL476291.1| GENE 107 92265 - 93203 697 312 aa, chain - ## HITS:1 COG:no KEGG:SAV0399 NR:ns ## KEGG: SAV0399 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 29 312 37 320 320 423 85.0 1e-117 MIIKIERTEKKKKTEKPKKSKQPRKQRKVPTIKVGTHKKLTFVLWVLLIGSVGFGIYKNV TAIDTHTIHETEIIEQQVVDTNQVERFVESFARVYYSWEQAQEKMDTRNEKLTHYLTEEL QTLNAEMIRKDIPTSSSVNNIQVWQVSQINENDFEVLFSVEHVITEDKDKKTISSSFHVV VHVDESNNMVIIKNPTMSKKPQKSDYQPQPLENNHSVDTETADEINSFLETFFQLYPTAT EKELTYYVSNHALPVINKEYVFEELVNPIYTQKDNHVLVNVVVKYLDQETKATQLSQFEL MLEKQDNWKIIK >gi|308151731|gb|GL476291.1| GENE 108 93220 - 94242 177 340 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 221 325 240 340 348 72 37 1e-11 MKLKITVICSGIFFLFFFLLLFMVIFFADDTDSGGNNKDSSVPQSGVTVSQEVLAHRPLV EKYGKEYGIEDYVSYILAIIQVESGGTAEDVMQSSESLGLPPNSLRTEESIKQGVKYFSE LLASAEQQGVDTDSVIQSYNYGGGFLNYVANHGKTYTYELAEQFSKEKSGGQKADYPNPI AIPVNGGWRYNYGNQFYVQLVSQYLTATSPTEFDDETVQVIMDEALKYEGFPYVFGGASP TTSFDCSGLIQWAYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTH VGIYVGDNRMFHAGDPIGYTDLNTSYWQDHLIGARRVIHD >gi|308151731|gb|GL476291.1| GENE 109 94239 - 96200 955 653 aa, chain - ## HITS:1 COG:no KEGG:SAV0401 NR:ns ## KEGG: SAV0401 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 653 19 675 675 1154 92.0 0 MGVILLLLGTLGNAVQATGLVDETIDTSNEYSKYGLNHYQLDYYVDNSWGWLPWNWSDGI GQSVMYGLYAITNFIWTISLYLSNATGYLVKEAYALDFISQTSQAIGENMQTIAGITPNG FSSSGFYVGFLLLFILIVGIYVAYTGLVKRETTKAIRAVLNFVVVFILSASFIAYAPDYI EKINDFSKDVSTASLDIGTKIVLPDTDSQGKDSVDMIRDSLFSVQVKQPWLLLQYGSTDI ETLGEDRVEKLLATSPDTNNGEDRENVVIEEIENHDNTYLTLPKTISRLGTVFFLFVFNI GISIFVFLLTGIMIFSQVLFIIFAMFLPISFLLSMLPSFDGMGRRAITKLFNVIMTRAGI TLIITVAFSISTMLYSLSASSPFFMIMFLQIVTFAGIYFKLGDLMSLFSLQSNDSRNMSK QVFRRPRQFMNRQTRRFQRNMSRVFRGKAGSTKQKTMTTKQNRINTANHTRQNERVTPAL SNSKKQQSGIGQRLGEKTAHVLDTKNRLVDKGKQAKQQIQATPTHVKYAVHQGKANVTHN LTDFKQSMATTKAQRKQQRMNQQEQKRKNIAQKRLALDKAKEKRRKENPTLPVQKKQQNL SKRQQTVTPVVSQNIDRQTHQRPWKKEQKQKTPPKQFNPRKLNKRTDKRGQQT >gi|308151731|gb|GL476291.1| GENE 110 96251 - 98704 1946 817 aa, chain - ## HITS:1 COG:no KEGG:smi_1330 NR:ns ## KEGG: smi_1330 # Name: not_defined # Def: ATP/GTP-binding protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 817 1 817 817 1541 96.0 0 MAHPIKYIEDNLVFNHDGEVFAYYELIPYNYSFLSSDEKVQVHDNFRQLIAQNRDGKIHA LQLATESSIRATQEQSKKEITGRLKEIAYEKIDEQTEALVSMIGDNQVDYRFFIGFKLLL NEQEVSVKNIGKDIQKAFAEFFHGVNHKLMGDFVSMPMSEIERFSKMEQLLESKLSRRFH IRPLGKDDFGYIIAHLYGQTGIPFDDYDYHLPKRYEDKKVLVKKYDIIKPTRCLIEEKQR YLRMEQEDTTTYVAYFTINSIVGELDFPNSEIFYYQQQQFTFPIDTSMNVEIVANKKALS TVRNKKKELKDLDSHAWESDNETSTNVVDALESVDELETNLDQTKESMYKLSYVVRVSAK NLDELKQRCDEVKDFYDDLSIKLVRPFGDMLGLHNEFIPSSKRYINDYIQYVTSDFLAGL GFGATQMLGENSGIYVGYNLDTGRNIYLQPSLASQGIKGSVTNALASAFIGSLGGGKSFS NNMLVYYSVLFGGQAIIVDPKAERGKWKETLPDIAHEINIVNLTSENDNKGLLDPYVILK LPKDSESLAIDILTFLTGISSRDSEKFPVLRKAIRSVTQSEQRGLLLVIDELRKEDTPIS NSIADHIESFVDYDFAHLLFSDGNVTQSISLEKQLNIIQVADLVLPDSNSSFEEYTTMEL LSVAMLIVISTFALDFIHSDRSIFKIVDLDEAWSFLQVAQGKALSMRLVRARRAMNAGVY FVTQNADDLLDEKMKNNIGLKFAFRSTDLVEIKKTLEFFGVDKEDENNQKRLRELENGQC LVSDIYGRVGVMQFHPIFEELLHAFDTRPPVRNEGEK >gi|308151731|gb|GL476291.1| GENE 111 98688 - 99083 252 131 aa, chain - ## HITS:1 COG:no KEGG:SAV0403 NR:ns ## KEGG: SAV0403 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 128 15 142 145 230 94.0 1e-59 MKKIRSYTSIWSVEKVIYAINDLQLPFPITFTQMTWFIVSLFVVIIFGSLPPLSLIDGAL LKYLGIPVVLTWFMCQKTFDGKKPYGFLKSIITYALRPKITYAGKQIRLNKEKMNESITI VRSEQLNGTPH >gi|308151731|gb|GL476291.1| GENE 112 99154 - 100179 278 341 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|314937367|ref|ZP_07844704.1| ## NR: gi|314937367|ref|ZP_07844704.1| hypothetical protein HMPREF9525_00050 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9527_02005 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9523_01249 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9526_00197 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9524_00211 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9524_00211 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9526_00197 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9523_01249 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9527_02005 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9525_00050 [Enterococcus faecium TX0133a04] # 1 341 11 351 351 643 99.0 0 MVIIDVYGKITKIKLSDKLKLYISNVSDDWKESIIEDMLQEIRQQKVDMADNLKRYGKTF QTEYSISYLKEIVHANVEDYTKYNLDSIESCLQCLVDNMICLFFDYEYQDMPFFDWTSNC FDGRFCEEDYAEKVMYFSNFVNHDIQNGIHMNCIYTSNMNPKEHTRILSNLSFRIDSNFK GCRTTDDYITELKKMGNRIDSILKSENDYYKLDYIMNGIYSDNSYNQNHYLKTFTLLELV LLKPNQNTNEIDKLLIPYLDKKYGEVSSEVAKLLRQMRNKIGHGDFKGFNEKAEKFAQKF MKHFHFDYTEYSRLNWVLLHTCCLLDDLLRITIFQQLKVTK >gi|308151731|gb|GL476291.1| GENE 113 100251 - 100751 622 166 aa, chain - ## HITS:1 COG:no KEGG:smi_1327 NR:ns ## KEGG: smi_1327 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 164 1 164 166 288 95.0 8e-77 MELKVYVANLGRYNEGELVGSWFTPPIDEEEMAERIGLNENYEEYAIHDFELPFDVDEYT PISEINRLCEAIQEIEGTPIYNELKEIQGMWFSSLEELLENKENIHCYSECDSMEDVARY YVEETGQLGEVPSNLQNYIDYQALGRDMEIEGNYLITSHGVFEYSN >gi|308151731|gb|GL476291.1| GENE 114 100813 - 101592 468 259 aa, chain - ## HITS:1 COG:no KEGG:smi_1326 NR:ns ## KEGG: smi_1326 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 259 1 259 259 473 96.0 1e-132 MKGSMNMFTNDQFKSLLIKTLERKSSSNYYEGGNEIVSKMKISEVTLDETNEFTYYKGYK RDWNTLCTYLKIRAPFDDLDFFESHKDLLTQTASSIYDKQGDNVLVDTILVPLPENYEVI NFSQLKISDVISQAIEDAESFMSNGEYQRAFDRVHTAFHGYLIEILKKYEITVPRDENLS KLYSRIQQLIEKEIQPTELADIVKTTIRSSNGMISSLNEARNRHSLAHPNTNIIGKREAK LIIGISSTVTDYISGYLDK >gi|308151731|gb|GL476291.1| GENE 115 101634 - 101804 184 56 aa, chain - ## HITS:1 COG:no KEGG:smi_1325 NR:ns ## KEGG: smi_1325 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 56 18 73 73 69 98.0 5e-11 MVLLAIVVIGLFLGFKREFSKLIGFLIIALIAVGLVFNAAGVKDVLLNLFNRIIGA >gi|308151731|gb|GL476291.1| GENE 116 101852 - 102124 270 90 aa, chain - ## HITS:1 COG:no KEGG:lmo1110 NR:ns ## KEGG: lmo1110 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes # Pathway: not_defined # 1 90 1 96 96 83 55.0 3e-15 MSLLTEELKKLGFQAYIQNTGKYTSLIIEGKRQAGDTIYTYDFYKVRFYKNYTSRITVYG EHLTPFQLLKRVKSYIYYREKYLKERRTIT >gi|308151731|gb|GL476291.1| GENE 117 102121 - 103305 1130 394 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 64 393 25 351 352 258 42.0 1e-68 MENEKIWIKELKEKRLAYGVSQNKLAVASHITRPYLSDIETGKAVPTQQVKEDLLNALER FNPDNPLEMLFDYVRIRFPTNDVSQIIGEVLRLNMDYMLHEDFGYYSYPEHYRFGDIVVL VSHDVSKGVLLELKGKGCRQFENFLLAQHRSWYGFFQDCMEHKGIFKRLDLAINDKTGIL NIPELAKKCKQEECISVFRSFKNYRSGELVHRDEKPDMGNTLYIGSLKSEVYFCIYEKDY EQYVKNDIALEDAEVKNRFEIRLKNDRATQAMKDLLEHQNAEKTAFEIINRYIRFADKDE TKRRSDWQTNERWEWFIGKNRGALRLTIQPEPYSFERTLNWLHHQVAPTLKVASILDILN GTTIISTMIHEAKLTEKHEKLIEQQHLGMEDLIT >gi|308151731|gb|GL476291.1| GENE 118 103487 - 104890 934 467 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 7 465 13 467 480 374 43.0 1e-103 MPLLHDRRKRIKANDKDLVYHFVLISLLIVFLVVLLPFHWRTLQSVNWQTVQLDTFFYQL HTPYFWSSILTAFFVCGLISWLYYHYRIDSIKQLEHRQKLARMILENHWYEAEETQSEGF FKDLSSKKTKQRIRHFPKMYYRMKDGLIHIHVEITLGKYQDQLLHLENKLETGLYCELVE KTLKDSYVEYVLLYDTIGNRIGIEDVVAQDGRVKLMESVYWEFDSLPHMLIAGGTGSGKS YFILTLIESLLHTNAKLYILDPKNADLADLGAVIDNVYYRKDDMLACISQFYDDMIARSE TMKQHPNYKTGENYAYLGLPANFLIFDEYVAMMDMLGRDSAQVMNKLKQIVMLGRQAGFF LILACQRPDAKYFSDGIRDNFNFRVALGRMSEMGFGMMFGSDTQKQFFLKPIKGRGYVDT GKSVISEFYTPLVPKRYDFLGEIGKVIQKKQSEPVPHEVKGTGSDLL >gi|308151731|gb|GL476291.1| GENE 119 104912 - 105685 427 257 aa, chain - ## HITS:1 COG:no KEGG:smi_1322 NR:ns ## KEGG: smi_1322 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 257 1 257 257 499 98.0 1e-140 MTNTPLILKEIPKDEAISFIRQYHYSKILPRLCKYFLGIFSEEKLLGVVELGWGTQPLQT IRKLFPDSSLQTTDYLEIGKMCFLPEMNQTNYFGSQALSALIKWLKEHTDCHFLYTLADG IEGKCGYVYQASNFFYCGYFKTSVYRDKQSWEKIHPRSARFLLEENARFEQVEKKHWLSQ AFCEYKGIEKINGRMFRYLYPLTKEAKKLLGHTLYRRHYYPKEKDLRFEKRIAYRKYEAI SQPTFDKQARIYNTQLF >gi|308151731|gb|GL476291.1| GENE 120 105695 - 106072 480 125 aa, chain - ## HITS:1 COG:no KEGG:smi_1321 NR:ns ## KEGG: smi_1321 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 125 1 125 125 221 99.0 7e-57 MRLAEGIVIEKDQTFGTLKFSALRREVRIQNEDGSVSEEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNAEVELINPVADTVATATFRGADVDWYVKADDLVLKGQTKPHQKYKKEA SESEK >gi|308151731|gb|GL476291.1| GENE 121 106093 - 106407 364 104 aa, chain - ## HITS:1 COG:no KEGG:smi_1320 NR:ns ## KEGG: smi_1320 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 104 1 104 104 199 97.0 2e-50 MELKYVIPNMEKTFGQLEYAGEGNIEQRRVNGRPTILSRSYNLYSTIQRADDIVVILPSE AGEKHFESDEKVRLINPRITAEGYKIGNRGFTNYIMHADDMVKA >gi|308151731|gb|GL476291.1| GENE 122 107024 - 107155 59 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNFFSSLLTVTDQPSSTQQRLGQLSGLVSLLIGLLLVIFSIIL >gi|308151731|gb|GL476291.1| GENE 123 107258 - 108565 1130 435 aa, chain + ## HITS:1 COG:CAC2367 KEGG:ns NR:ns ## COG: CAC2367 COG5492 # Protein_GI_number: 15895634 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 19 420 232 589 752 193 30.0 4e-49 MKKSVITSSMLAVLLLGFLVTPISAYALERSKGTTEETVASETSLTEQQMSSGVTEEMNP SFINSQEETETTSTSSTSDSTTEVSTSEVTTVNDTENSSDDTETTLETSQSNEDTPVAPA KAEEKVPDINYQTHIQDIGWQGVVKNGEISGTSRRSLRLEGIKMNISNSDLAGSVEYRTH VQEIGWQGYVKDNQLSGTSGKSLRLEAIQIRLTGEIANAYDVYYRVHIEDKGWLNWAKNS ESAGSQSAAKRLEAIQIKLVKKGEAAPEGNGKAFLIGNEAKRPDEIKPNVNYQTHVQEIG WQGFVKNGEIAGTSGKNLQLEAIKINLSDAALAGNIEYSTHIQNIGWQDYKANGALSGTT GKNLQLEAIKIKLAGDVSRYYDVYYRVHIQDKGWLNWAANGAPAGSQAASKHLEAIQIKV VRKGETAPKGSGKAF >gi|308151731|gb|GL476291.1| GENE 124 108658 - 109641 801 327 aa, chain + ## HITS:1 COG:CAC3279_1 KEGG:ns NR:ns ## COG: CAC3279_1 COG5492 # Protein_GI_number: 15896524 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 1 128 46 172 482 122 48.0 8e-28 MQNIGWQGVVKNGEIAGTSGKNLQLEAIKINLSDAALAGNIEYSTHIQNIGWQDYKANGA LSGTTGKNLQLEAIKIKLAGDVSRYYDVYYRVHIQDKGWLNWAANGASAGSQAASKHLEA IQIKIVRKGETAPKGSGKAFLVGDEARTPAEIANRLRAERLKKKPYYYSQRDPQWINTYI GNYTIGAAGCVPTSLSMILRGSYGYNVNPVSVATRMASYGGLNQRYFGASATDLVITAQS YGRSIKVINDVSTLNAYLSEGYPVILYQNVGIGHAIVVHEYKNGYTLTYDPYGRQFYSGW VSTQALWNTPSNDPIDWTEGRPCFVIL >gi|308151731|gb|GL476291.1| GENE 125 109651 - 110028 222 125 aa, chain + ## HITS:1 COG:no KEGG:EF0122 NR:ns ## KEGG: EF0122 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 125 1 125 125 105 99.0 8e-22 MKKKLIVLLLALFLTACSNNTGGKNSDASSTEVSTKQQTTQSSKKDSSNPDTTPTSTSSI TIETTENLKNRELNPTDDVSKTRRQLYEQGINSSTITDKELKEYISEAKEQKKDVIDYIK QKINQ >gi|308151731|gb|GL476291.1| GENE 126 110195 - 110740 674 181 aa, chain + ## HITS:1 COG:no KEGG:EF0120 NR:ns ## KEGG: EF0120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 181 1 178 178 343 99.0 1e-93 MEKMYRSPYEAYPYLSSKPEDLRCDFELMTDELASMTGLLRGYVQQLDVPEQPALTEELA KICELIYHVNPTTRTKLTVTEEEIAWLLERVNAMNELTYEENRPFVLPMGTICSSYAHIL RAKAKDIVRLLYRMDYGGKKIDPQLYDVVNLLSGYFFMLALYLNQLENGEEVPFVSRNYS I >gi|308151731|gb|GL476291.1| GENE 127 110789 - 111577 913 262 aa, chain - ## HITS:1 COG:PA3578 KEGG:ns NR:ns ## COG: PA3578 COG0384 # Protein_GI_number: 15598774 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 1 260 1 260 261 236 49.0 3e-62 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALR WFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILP ERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTAS GDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK ENRVIIGGTAKLFAKGEAYLFV >gi|308151731|gb|GL476291.1| GENE 128 111579 - 112544 937 321 aa, chain - ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 55 320 65 330 339 159 33.0 8e-39 MDIISYERVIQQLSFSEAIQVMKRCFAELQKGKISQSERHVEVLPDGENQNLFALMPAYL GKNRFFGAKIITAFPENPQKNLASHLGQILLFDSSTGRPVAMMDANAITWLRTAAVSALA TDYLAAPKAKSIALIGAGQQASSHLAALQSVRAIEKVFIYDRTAERARKLIAKQQHNYPE CTFIGCSSVQEAVQEAEIICTLTSSHDAFLEEKDVLPNAHINAIGTFTPTSRELTSDLVK NSQVFVDEYAAALKESGDLLIPISEGAFSAEKIVGSLGELVTGKVKLKAEQKGRTIFDAV GLAVEDLCCAEYIYQKIQGEN >gi|308151731|gb|GL476291.1| GENE 129 112642 - 114054 1166 470 aa, chain + ## HITS:1 COG:BS_ydeF KEGG:ns NR:ns ## COG: BS_ydeF COG1167 # Protein_GI_number: 16077585 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 462 4 464 465 259 33.0 1e-68 MPINSYENYALSWRPVKERLTRPYYQSLVQQLEADILSGALQKNVKLPSQRELADYLDLN FTTIGQAYKHAMEKGLLYTNIGSGTFVSPNAFHSITISTNQVADHLIDLGLVSSFDMCNQ RILPFIESVSKNAALNSLLNYRDPLGTHFQRATAAEWLQTQGVRTNAEEVAIVSGVQNGL AVTLAAAFSPGQRIAVDRYTYSNFIELAQLYHLEIVPIGYDSEGMDPEHLLQECKKKKIH GIFLMPACNNPIGFQMSSARRMTLAEIIQQEHLWVIEDDIHSFLTTYAQQAVLPTFQELL PQQTIYLAGMTKFVCTGLRIAYLVFPPLLRQEIERAIFNINVKTSGFDAEIVTQVLRSPV AEELVIEKLALTKQANDLFDTIFGLARPSNPLPYYRTIPLSTEKTAPKIEQEFLQNGVRL FHSSRFTVQNQPDAFLRISLASNQLEVLAKGLTIIQELLPTLNEKKGHSL >gi|308151731|gb|GL476291.1| GENE 130 114051 - 114494 443 147 aa, chain + ## HITS:1 COG:lin1093 KEGG:ns NR:ns ## COG: lin1093 COG4815 # Protein_GI_number: 16800162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 145 6 145 151 140 47.0 1e-33 MNSLPILEKAVGAITLLSEEKQNAEYESFLCQVNESQQLIRSRLAKKTPKKEGYFVAFWE KNQQNQNEAFDATEAPEMLAIVIADQEKQGLFLLPKECLIQQKILKTHQQKGKMASRFYP SWCQNLNQTAKKTQKWQLTYFTDLSKY >gi|308151731|gb|GL476291.1| GENE 131 114534 - 115802 1370 422 aa, chain - ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 297 412 18 134 137 99 44.0 1e-20 MSNENIVLARNTEHAPKHPLAAQTVAFSHYNHLSAQLPIEPTSGQLVEGGIRAQATQCLK NIQAVVESINHVMSDIVRMTIFVKDMRDVAAVEEVYAAFFTHYYPAKTVIAVADLPLGAS VQMETLVSNGEGTIPNAPQAGDLIKLTNQTVQAPIDALASQTVAFSHYNNLSAQLPIDPQ TGRVVAGCVKTQTKQCLKNIKAILTSIDVPFDDIVKVNIYLKDLSKLEAVNQVYAAFFPD SGIARTVNYMPARTVIAVADLPMGAAVQVEAVVSHGDGTPPQAIEDRHGLIIEANNTDYA PKCPFSTQTVAFSHYNHLSAQLPLDPKTNALVAGGIKEQTTQCLENIKAIIESVDHSLAD LVKVNIFVKEIEELAAVDDVYQTYFPEGTPAKRVIGVTDLPKGAQIQIEAIAGNAEGTPP IG >gi|308151731|gb|GL476291.1| GENE 132 116231 - 118717 444 828 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] # 620 824 1 209 539 175 40 1e-42 MVFKVGNNLSTRKGENRETIVSWLGLSLLVGLAFILFSLFHQPMVSQANEPTQEKHFMVY YRAWRDKTMQGVNTTLPDENWLTMHDIPYGIDIVNVFSYVPKGQEALAQPFYDTLKNEYA PALHARGVRLVRGIDYSELLKVPYAGTTPTEAEFDAYAKELLTKFVDDLGIDGLDIDMET RPSEKDIVLSNGVIRALSKYIGPKSGTDRPFLYDTNAEYLPPLQDVSDCFDFLAYQQYGS DDQRTQRALNNLSPVLNGERFVPGLTFPEEQDRNRWYDTKEPYMESNMYKVARYSYENNL GGMFLYALDRDGRTYNEDDLNQIKPSNLLWTKTAIAESKGVSLGEMKAAAQHYLKRISYA NADLEAQNKAAEAVTQATTLYDVNKAILGGDYGQGISNTYDAELEKGLLAIDLTTLYRAL DQAVTAIEKAENYTPETIQALQTTKETVATELAGKTYTAAQVTTWQTEVQTALDNLKEKQ TQPLKSVFSIDAGRKYFSVEQLEELVAKASQNGYTDVQLILGNDGLRFILDDMSVNVNGK KYNHNRVSKAIQRGNNAYYNDPNGNALTQKEMDRLLAFAKARNINIIPVINSPGHMDALL VAMEKLAIKNPAFDGSKRTVDLGNQKAVNFTKAIISKYVAYFSAHSEIFNFGGDEYANDV DTGGWAKLQSSGRYKDFVAYANDLAKIIKDAGMQPMSFNDGIYYNSDDSFGTFDPEIIIS YWTAGWSGYDVAKPEYFVQKGHKIFNTNDAWYWVAGNVDSGIYQYDDALANMSKKAFTDV PAGSPNLPIIGSIQCVWYDDPRRDYDFERIYTLMDTFSENYREYMVVK >gi|308151731|gb|GL476291.1| GENE 133 118949 - 119965 1031 338 aa, chain - ## HITS:1 COG:mll2116 KEGG:ns NR:ns ## COG: mll2116 COG0604 # Protein_GI_number: 13471972 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mesorhizobium loti # 1 332 1 333 334 297 49.0 2e-80 MMKAALIHKYGQKELSIEEVPLPTIHDNDVLVKIIAASINPIDLKTKDGKVKMLLNYQMP LILGSDFAGIVVSVGKKVQNFRLGDAVYGRVPKNRVGTFAEYIAVDQAAVAMKPKNLTFE EAAAIPLVGLTSYQALHDIMNVQPGQKVLIQAGSGGIGTIAIQLAKLAGAYVATTTSSRN KEWVQALGADEVIDYRTQNFEEVLSDYDYVFDTMGGTILEKAFSVVKPQGKVVTLSGIPN ERFAKEYGLPLWKQWAFKIATRKIHRLEQDTDVSYHFLFMRPDGEQLALLTEFIEQGKLQ PIIDRVIPFSQIQEAVDYSLTGRAQGKIVVKIADVDHD >gi|308151731|gb|GL476291.1| GENE 134 120145 - 120480 527 111 aa, chain + ## HITS:1 COG:no KEGG:EF0110 NR:ns ## KEGG: EF0110 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 187 100.0 1e-46 MKELEEIQTEFTALSDFLIALGDEKRQAIIIALLEDQACVGRRVTELTEATQLSRPAVSH HLKILKQAKLIDCRSEGTKNYYSLSHDTTKIEQLQQLLTHITSIMPGRKQA >gi|308151731|gb|GL476291.1| GENE 135 120477 - 121157 595 226 aa, chain + ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 221 3 224 235 181 43.0 7e-46 MKKILVVLTNVSRYHGTEEPTGLWLGEATEFVEEVTKAGFSVDYVSPQGGYVPLDPRSMK YVDSSIMAVYESADFQERALAHSLSLEEIDPDEYAAIYFTGGHGVMWDFPDNPQLQAITR SLYEQGKYLTSVCHGIAGLLNVKDASGNYLIADKTITGFTTAEEILAMKKAVVPFLNETI AKEHGATFAKKRPYKEFAYQDGRIITGQNPFSVRAVARLLIQQLSK >gi|308151731|gb|GL476291.1| GENE 136 121248 - 122699 1487 483 aa, chain - ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 478 497 285 37.0 1e-76 MAEKKKKNKKQLSSFSILFIILIVLGIVTVLLNGQPFTPREIDGKMVDHVVGAKLSDIIM APFNGFKDAIEINIFILVLGGFLNIVTQTGALEAGIQSVVKKLKGNELKIIPILMILFSI GGSTYGMAEETIPFYGLLSATMVAAGFDTFVAVGTVLLGAGSGVIGSTVNPFSTGVAMDA LRGIGIQPNTGIILIVGAILWAASTSYSIFIVMRYAKKVKADKGSTILSLQEQEDMEKTY GQAASKEMPFTNRHKKILMVFAFCFVIMIVSLIPWNDFGVTIFKGWTSVLTGNSFGDWYF GDLAMWFFLLGIIAALIGRFTEKETIEAFIDGAKDMLSVVLIIVVARGASVLMSKTYLDS FILDKAAGLLQGLSPVLFVIGAFVLYLGLSFLIPSTSGLAYVSIPVMGALAKNIGLSPEV MVMIFASGCGLINLITPTSGVVMGGLEISKVQYATWTKFMAKPMIVLGLINLIILIGAML LFS >gi|308151731|gb|GL476291.1| GENE 137 122747 - 123436 393 229 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 12 224 15 222 226 139 36.0 5e-33 MIEKIITKNNQDFQYFSESELTELRNESFVRSYKKGQVLFYPGDPRNHLILLVSGVIKIE KNDRSGNFSYLHFMKKQALFPRIGLFQDEVHYDSAIAYTDIEVVFVPVKLFERFLQNNPQ QLIHWIQEQSVLLKESMIKIQKGTTNDACERIVTSLAMLLNDLGERIDNRERVAITCPIT INDIARMSGTTRETASSVMKKLVQMNRISYSHKFLTFLDTPFFIDRLSN >gi|308151731|gb|GL476291.1| GENE 138 123464 - 124396 1342 310 aa, chain - ## HITS:1 COG:SPy1541 KEGG:ns NR:ns ## COG: SPy1541 COG0549 # Protein_GI_number: 15675439 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pyogenes M1 GAS # 3 295 4 301 316 352 66.0 5e-97 MGKKMVVALGGNTILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLL QQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPAD EAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIK NDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSG DEIVGTVVTK >gi|308151731|gb|GL476291.1| GENE 139 124502 - 125521 1459 339 aa, chain - ## HITS:1 COG:SPy1544 KEGG:ns NR:ns ## COG: SPy1544 COG0078 # Protein_GI_number: 15675442 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 339 1 337 337 551 78.0 1e-157 MNSVFQGRSLLAEKDFTRAELEYLVDFSIHLKELKKKGIPHHYLEGKNIALLFEKTSTRT RSAFTTAAIDLGAHPEYLGANDIQLGKKESVEDTAIVLGSMFDGIEFRGFSQEVVEDLAK YSGVPVWNGLTDQWHPTQMIADFMTVKENFGRLEGITLVYVGDGRNNMANSLLVTGAILG VNVRICAPKELFPSDEVVNYAKEFAKESGAELMITDDVAKGVKGANVLYTDVWVSMGEED KFEERVNLLKPYQINMAMLEKTENMDGDLIVLHCLPAFHDTKTQYGEMVAEKFGITEMEI TDEVFRSKYGRQFEEAENRMHSIKAIMAATLGNLFIPRV >gi|308151731|gb|GL476291.1| GENE 140 125550 - 126776 1429 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 408 3 409 409 555 67 1e-157 MSHPINVFSEIGKLKTVMLHRPGKELENLMPDYLERLLFDDIPFLEKAQAEHDAFAELLR SKDIEVVYLEDLAAEALINEEVRRQFIDQFLEEANIRSESAKEKVRELMLEIDDNEELIQ KAIAGIQKQELPKYEQEFLTDMVEADYPFIIDPMPNLYFTRDNFATMGHGISLNHMYSVT RQRETIFGQYIFDYHPRFAGKEVPRVYDRSESTRIEGGDELILSKEVVAIGISQRTDAAS IEKIARNIFEQKLGFKNILAFDIGEHRKFMHLDTVFTMIDYDKFTIHPEIEGGLVVYSIT EKADGDIQITKEKDTLDNILCKYLHLDNVQLIRCGAGNLTAAAREQWNDGSNTLAIAPGE VVVYDRNTITNKALEEAGVKLNYIPGSELVRGRGGPRCMSMPLYREDL >gi|308151731|gb|GL476291.1| GENE 141 127073 - 127561 519 162 aa, chain - ## HITS:1 COG:SPy2150 KEGG:ns NR:ns ## COG: SPy2150 COG1438 # Protein_GI_number: 15675892 # Func_class: K Transcription # Function: Arginine repressor # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 139 145 78 34.0 7e-15 MNKQTRQSLIKKIIQTTVIHSQNELLKELKKREINVAQATISRDLWELKVVKALDESGEM RLTIFEQFTSLEERKKEQLIQAIREVVTKVERVAFLLVVHTLPDNATLFSAVLDEVSLCE KKCSVAGFDTVIIVSSSEEKAQELEQYFQQFIQPTPLSKSNA >gi|308151731|gb|GL476291.1| GENE 142 127804 - 128283 417 159 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 152 1 145 149 96 35.0 2e-20 MNRLKRQTMIKRLVTENEIHTQSELLALLEKENIHTTQATISRDIRELNLNKVDNGQGEA YYRILNNSALRPKYKTDEERLVDIIIETGVSLTQIEFTNLLTVLPGNGQAIGVLIDRIRI HNPHILGCIAGDDTILILSKNKEDALEVNNYFQQYLYHP >gi|308151731|gb|GL476291.1| GENE 143 128449 - 129363 681 304 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 299 1 299 306 204 39.0 2e-52 MTEQFILTSNDQQTQLNVRHWPCPSPKAVVQLIHGMAEHIQRYDEFARFLNQLGFAVIGH DHLGHGESVQPSAPIYGFFGEQGPENVVTDIHQVKQWAVNRYPQLPYFMMGHSMGSFALR NYLQDYPVTVQGVIFMGTGTSPLPLTAALPFIKKMAEKQPKKPAPFIDKLAFGSFSKKFP EASSFNWLSKNQANVADYENDPLMGFVFTNNGFATLFSLVKRANQKNWYQAIPKELPILI ISGAEDPVGDFSKGPAKIQKQLKHAGFQHVTLRLFPTLRHEILLETEKATVFQEIGHWLT DLTN >gi|308151731|gb|GL476291.1| GENE 144 129400 - 130671 1386 423 aa, chain - ## HITS:1 COG:SPy1742 KEGG:ns NR:ns ## COG: SPy1742 COG0172 # Protein_GI_number: 15675591 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 422 1 422 425 608 70.0 1e-174 MLDMKKIRQNVEVVQKKLKTRGVDEEVLLRFLALDEERRALLVKVEELKKHRNQVSGEIA QLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAA NVEVRRWSTPKTFSFEPKPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNF MLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESDLTLIPTAEVPLTNYY NNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFSDAEHSYEELE KMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQ ARRALIRYRDKTGHVQYAHTLNGSGLAVGRTVAAILENYQNEDGTVTIPEVLRPYMSGLT KID >gi|308151731|gb|GL476291.1| GENE 145 130698 - 131591 1225 297 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 289 1 289 299 304 62.0 1e-82 MYLSIEEFIDKAEKTGKKISDLMIEQEMERSQKSYEEIWTQMGQNLDVMDAAVKRSQEGA GVFSPTGLTGGDAARLKKYRAAGKTLSGDLMMSAVQAALGTNEVNAAMGVVCATPTAGAS GTLPGVLTAIKNTLNLTRDQQIRFLFTSSLFGMVTANNAMIAGAVGGCQAEVGSASAMAA AAAVEAAGGTPRQSSEAFAMALGNLLGLVCDPVAGLVEIPCVKRNTVGAGNALIAADMAL AGIVNKIPADEVVEAMNKVGRQLPRELRETGLGGLAGTATGQRMKNEIFEKVKFTIV >gi|308151731|gb|GL476291.1| GENE 146 131606 - 132313 860 235 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 17 212 1 195 220 164 44.0 1e-40 MNTAMAINKPKKVNKVMNYKSCFDIIGPIMIGPSSSHTAGALAIGLAARKLFGGTPEKIV IKYYESFADTHKGHGTDFAIIGGILGLAADDANVTQSIELAEEQGIEIQFLEMSEESPVK HANTACVTLSDATHEIHLTGISVGGGTIEVKYIELDGFNVQLHGPLPILLVINQEEQAMQ AFKDTLQKNNIQVNAVSRYVEGDQILFIFDLDSAPISSVKEQLFSLDDTSKIILL >gi|308151731|gb|GL476291.1| GENE 147 132288 - 133394 1424 368 aa, chain - ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 333 1 333 347 275 49.0 9e-74 MKTLSGILMLVLVLCGMSLFSFKAPRGKKSLSALSGAACATFLPEAFLRYAVGGVFHLDY VSQIGETMGSLGGLAAGALVPLAFGISPVFSIILGLSLIKVSLLPAFITAYLLSFVVEQM QKRIPEGIDLLVVILVIPVAASLVAGFIQPVVLGVLEVIGGTILSAVDGNPYVMGAILGA IIPIVGMTPLSSMVLTALIGLTGVPMAVGALTCYGSSIVNAALFKKLKLGTASTPLAVAI EPLTQVDIISSNPIPIYATNLFSGMVSGIVVTFFGLKVPVTGMATPWAGLLVTLGNNAIQ TTLLAVAIITVVSLMFGFLGALVFKRYRIEAVDNTPEFEGTTEVTSEKEKEAVKTKGGVT YEHSYGHQ >gi|308151731|gb|GL476291.1| GENE 148 133651 - 134391 620 246 aa, chain + ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 218 23 230 240 166 38.0 4e-41 MESYLRLSEVDKQILHSHALMLDGLGNFFGSTHEVILHSLENLESSAIKVINGHFSNRKE GAPITDMALKMLSQVESEHDYAVKPYYNKNQKGVILKSSTIPVIGENDRIIGLICINMHL EMPLIDYLQDLLPSGQQNDMSQELKNSEHFSDNIDELITTSLTKVKQAVESDPNVSHLNQ NKEIVIRLYDQGIFNLKDSVIKIADRLGISKNTIYLHIVFQKIPSIYISAIIKKKKLKNI KATNAN >gi|308151731|gb|GL476291.1| GENE 149 134423 - 135208 758 261 aa, chain - ## HITS:1 COG:no KEGG:EF0095 NR:ns ## KEGG: EF0095 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 392 99.0 1e-108 MKKIALFSMLTFSVLSLSLAGCGNKKTASTNDSKPKQETKKATQKSSSQQEMKSSHSSVT GQNSNVTGENPSENATQPSAGTDETNEVPQNQAPDTNITITNVVFNPERNEINGTTLPNA TITATVVGDASAQAGVFYADANGNFTVISPRAGATTQLIATVDQRNSAPVQIDIPSSGQE AALSFSNITIDPKQGTISGKTAPNATILVSRADDARVILASFTADAQGNFTASNLVPGTK NRLDVTLNGEIGAPYLFDLPN >gi|308151731|gb|GL476291.1| GENE 150 135364 - 136125 973 253 aa, chain - ## HITS:1 COG:L195318 KEGG:ns NR:ns ## COG: L195318 COG2116 # Protein_GI_number: 15672950 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Lactococcus lactis # 1 253 1 253 264 317 65.0 1e-86 MYTPDEILSISIENGQKKIQKPLVAKLILGFIGGAMISLGYLAYVRVSASIPADLASVQA LVGAAVFPIGLIVILMAGGELITGNMMAVSTAWFAKKVSFRELLVNWVTITLANMVGALF VAYFFGHYLGLTSSGAYLNQVLSLAEHKVAATWLQAIISGIGCNWFVGLALWLCYGAKDA AGKLLGIWFPVMIFVAIGFQHSVANAFIIPAAIFEGGVQWGDFFRNFIFVYLGNIIGGAI FVSGFYYLSYRKH >gi|308151731|gb|GL476291.1| GENE 151 136302 - 139334 1897 1010 aa, chain - ## HITS:1 COG:no KEGG:EF0093 NR:ns ## KEGG: EF0093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 736 1 736 1055 1285 98.0 0 MKKTILILLFGLLTVVGLPMVTEAAEPVDATDATIFGAQAMVPNSTEDQTDKLQTLLSQT AKEGRALFLPQGSYALSKDIAISSNYQLIGDTTGATILHNATGAPIQLTDTTYGTKTNVR LQNIAFDGINVTLKLTNQLTLANNIFYNPLKGFVVNLNADIGVKISGNIFMRDTAHMQPK IDFNRAIYIGGYSTPSRFQYMSDVDIVDNLFGLKVTELDAIKSTSRSDLAATITRLQTAI EAGAISVPNEQNYLSTGVNSFNMLKDVTVQHNFFYSPYDNEDLNGLVGDHAIYFRGAQNI TVVGNHLRGLQNGPAGGFKFKSGRNITIMNNYLRNTGLIMYGTPEIGLAETQAEGAISEL SNWLVANNIFDWKYWNNQYAIGMEYNRHTGNNNVFNGVFINNQFVNYHNIPQNRRRELLI ASGGGFRPETSFVKDNTRDDGLKNGQLLVENWTEADYRLMPATWESLISPTLYEQYKNTP IPVRNTLATPVATTIVQGQSIDPQQLVANTNDADEAVPTAKIVNPEVLNEIGQQKVTVQL TYETGSLVTVNVPVTVEAPAKKLDLSQLQTVYASIGEANQYTVYSWQLFTAIGPKTIVPS YYQQATQLLAEGQVSGDKTQEQVDQLTSNLQSAMKVLVKKADITLKRTEAENELASVHKL DESVYTKDSWQAMQEALIDTTTGEGSSKQLQQLLAWSDEELLEPTLGGFKTPADAQKRIN QLTQTIKTALLLLVEKSTETTSNTSESSTSSTTSETSNTSESSTPSMTSESSSTSESSTS STTSESSSTSESSTPSMTSESSSTSESSTSSTTSESSSTSESSTPSTTSETSNTSESSTP STTSETSSTSESSTSSTTSETSNTNESNTPSTTSKTSSTSESSASSTTSATNSTSESSTP SPVNESSQNKGQNSVIYAVESNQDPNDAQSNSKPSAKASQTKESVAENQATKQIQTNQES SGTVKKADNTTKIAKKKFPKTGEQSSTVVSFLGLSFLSLAIATYCFKVKR >gi|308151731|gb|GL476291.1| GENE 152 139349 - 139588 381 79 aa, chain - ## HITS:1 COG:no KEGG:EF0092 NR:ns ## KEGG: EF0092 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 114 97.0 1e-24 MKKRMEQIEEILSCEENSAGVRLKELVEALELEVTNQNLLKVTSILHMNPKFKKIYAYED SRVITLYQLLQNKPLEVTE >gi|308151731|gb|GL476291.1| GENE 153 139924 - 141429 1372 501 aa, chain - ## HITS:1 COG:no KEGG:EF0091 NR:ns ## KEGG: EF0091 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 501 1 501 501 928 98.0 0 MKWDEYVDIFDTDVVSKIIILRNLPINEGWIDINELAEELQLNKKSVKKYVELLKDDITY YAVDNDASLAFEKGHGYRLNLASSQAFQKLYTAIFRDSLTYQVMEDLFWGRFNGIVPATA KYHTSDATIRRLLKGFTEILAPLGLVINKSTWKIEGNEAYLRHFAYTIFMDLIRDTWPFD YIQETEVAQTVQKMMAFFNVEVAETVTRRVKYMVAISKVRSAQGAEYRPSAEQETYLEGN KHYQAFIEEMTATTLFLNKNDLTFVYFFLLANDQFYQDEATAQAILAHFDETEAPVYMLT HLVQHFLLEEIHMTPQLEKIRPQIFYYLFATHLFAELYYVQNVKMYNVFWNKVKEKYPVL LEELSQGLNQLYEQTGNELFTNKEFLALRYSSVLALSNDLIHREQKIVLGLKSGLPVLEE ERVKLSIENNFRRFYALEVLRYSEASKEEWQNIDLLLVTSLTDVETGHPEIFLLSSELTF EQYNRLNQKIVKINEKRTTSL >gi|308151731|gb|GL476291.1| GENE 154 141511 - 142422 1074 303 aa, chain - ## HITS:1 COG:SPy1158 KEGG:ns NR:ns ## COG: SPy1158 COG1597 # Protein_GI_number: 15675134 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 300 303 188 32.0 9e-48 MKKMMVLYNETSGSSESKEIAERFKKAAEARGEAVILQPSNPDIDPEEMRKNAKENQVGV LVVIGGDGTIHHAVQNFKDTIRDYQIGIIPGGTVNNFARVLSIPLKEEDAFETILAGQTT PVDFGMVNQDVMISTLTIGLLADTAANVTQQEKQKYGPLAFTKQFFRLLMKKKKYKLKID GDERRWHGKDQLLTMTMTNSAGGFTNFDANATPDDGEVHIIILPKLVFYKFVYYLPKIIR GQLNEIPGVVYFSGSQFKISGEKDKKVQTRTDGDPTDDLPIKVTVEAGGLNVFVPETSTS TKE >gi|308151731|gb|GL476291.1| GENE 155 142699 - 148797 6398 2032 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 15 2031 11 1982 1983 1150 37.0 0 MRKNGPMVNRWLYGLMCLLLVLNYGTPLMALAEDVNSDGQLTLGEVKQTSQQEMTLALQG KAQPVTQEVVVHYSANVSIKAAHWAAPNNTRKIQVDDQKKQIQIELNQQALADTLVLTLN PTATEDVTFSYGQQQRALTLKTGTDPTESTAITSSPAASANEGSTEEASANSSVPRSSEE TVASTTKAIESKTTESTTVKPRVAGPTDISDYFTGDETTIIDNFEDPIYLNPDGTPATPP YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAEGNVYGTYTI SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQEDLPPVVIPIVP DTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNPTVTETWPTGNTFKSVKVYELVMN LDGTIKEVGRELSPDEYTVDKNGNVTIKGDTNKAYRLEYQTTIDEAVIPDGGGDVPFKNH ATLTSDNNPNGLDAEATVTATYGKMLDKRNIDYDEANQEFTWEINYNYGEQTIPKDQAVI TDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGKDYKVVINGDGSFAIDFLHDVTG AVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSEGDGTASQQNIIKNTGAVDYQNSTIGWT LAVNQNNYLMENAVITDTYEPVPGLTMVPNSLVVKDTTTGAQLTLGKDFMVEITRNADGE TGFKVSFIGAYAKTSDAFHITYTTFFDVTELDANNPALDHYRNTAAIDWTDEAGNNHHSE DSKPFKPLPAFDLNAQKSGVYNAVTKEITWTIAVNLSNNRLVDAFLTDPILTNQTYLAGS LKVYEGNTKPDGSVEKVKPTQPLTDITMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDE KVIEGSASYDNTASYTNQGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGA QSVLDDVVITDTLSPNQVLDPESLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNE TGQQKIVVKMAHIEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVV DIDHSGGHATGTKGKIQLKKTAMDETTILAGAHFQIWDQAKTQVLREGTVDATGVITFGG LPQGQYILVETKAPEGYTVSDELAKGRVITIDEETSAEGAQPTIIKNDVNKVILEKTDEK GKKLVNARFKLEHAVTTPFTHWEELPLAPDRTNANGQLEVDSLKPGLYQFTEIEAPTGYL LDTTPKRFIVTQNTSGQIRDVHVKMLNYQGSAELIKKDQAGNPLAGAEFSVLDTTGQAVR EHLVSDANGKVTVTDLAPGKYQFVETKAPAGYLLNTESSAFTIAASDRGKPATVIATANF VNYQGAAKLIKKDVNGHLLSGATFKVLDAKGQTIQTGLTTNSQGKIIAEHLAPGKYRFVE TKAPTGYLLNTAPVPFEIAEKNAGKPAVVVASDNFVNYKGAFQIVKTNSADQPLAGAVFE LYDHNKQSLGITATSGKDGKIIFRDLAPGTYYYKEIKAPKLLDGADYIIYPELVKVEIRG DFKGDPEIFQLGAFANFKGRAVFKKIDANANPLPGTIFKLYRIENGEKIFEREVTAEKDG SLAMDDLGAGSYELDEMDATDGYIVNKQPIYFVVKKNSNDKQPLDELEFVNYQAEVTGRK VNEQGQTLAGAVFAIYNVDNQNQPQGSPITFLNRAGEKVSEITTDKTGEIYAKGLNEGHY VLVETKAPTGYLLDTTPHPFDVTAQLGKEQPIALGDLINYQGTAQLTKENETGEALAGAV FKVIDETGQTVAGQANLMSDKQGKVIAKNLAPGTYRFVETQAPTGYLLNETPSASFTIAK DNQGKPATVVLKAPFINYQGAAKLVKIDQQKNALAGAEFKVTDAETGQTVARSLRSDNQG LVQVNHLQPGKYTFVETKAPDGYQLSKQAVTFTIAATAKDKPELVDAGTFVNEKQTVSKK TKPNQPTTKQAARDTGWLGLPKTNTQVNYFFVFIGLMLVGLASWLFYKKSKK >gi|308151731|gb|GL476291.1| GENE 156 149508 - 150995 1106 495 aa, chain + ## HITS:1 COG:no KEGG:EF0086 NR:ns ## KEGG: EF0086 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 495 1 495 495 916 100.0 0 MYNLLTKQEIQLLSLIEYLYDSKEKVPMQVLRRKYEFSHYNINNLLNQLTLLISRVNTHE NVHIRIINNQQSIELVADENIPIELMKEAVVRGSLTYMLALDLLLKRYTSAKDFCEEHFI NFSIFKQVSDRLNNHLARFNCYLNLKRREKICGNEKDFRSFFYSLFFISGTSLVPFLSKT NQAQLQNFIEIIKNRYPYFTYTDLRKLKLIMSIGLLRYQSGFTITNYPEVAAINLAFPYS EFQLLVNDCFIDEQKEPDTWQAEIHFYYDFFSTLTMYSLVQMETINFANLAIMGMDNSPH ATWIFEKCTQLQLDLSAIEVVFLLVNLSNASERLIHFPVEEELSYEVANVSLYEKQYPNV SRTTNYFLKRLPFDKQHPLDALFKETIFLIIRSVLLNKQIPVKILLHSSINQIQENWLAK EINNYCDVPLKFVNHIQEVPDLVITDKNNPLFHASKTFYWHPVPYLDEYYNLKQVVRKIY FAKLRGENSLEGIGC >gi|308151731|gb|GL476291.1| GENE 157 150989 - 151882 841 297 aa, chain + ## HITS:1 COG:no KEGG:EF0085 NR:ns ## KEGG: EF0085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 297 1 297 367 502 100.0 1e-141 MLTGLLDVPYRKSFALLEELLERREAEEQTLAISTLATQLKMQQNTILQSVALLQTEIEK NGWENLFSLSANAKEITFWFAPYFQLSFLMPYFVKKSFAYQVLTYAFNHNAIDSKHFEKV LEISSSTFTRKIGQLNQWLQKYQIEINLKRTNVLVGKEKDIRIFFMMLFWNNYSEGDWPL HTITKKEVHSLFRRLKHSVSFNTTQDFTKDLIFSAVILARWKEGFFIKETFVEEEAIVNP FVNLSEFELFFKEEALHQVPTKFIQKEGLFAFFLLTISVSYATQDVLEIPAARMHMV >gi|308151731|gb|GL476291.1| GENE 158 151943 - 152473 284 176 aa, chain + ## HITS:1 COG:no KEGG:EF0084 NR:ns ## KEGG: EF0084 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 50 176 1 127 127 221 98.0 1e-56 MTFHEYLYLYTSIQNLSVFFKTFVTIANPFVQESFLKEALQKNPSLYKDVKRLTIEMLPT LMGNEKLLVDCLFILFCTLKTKSLPPIRVLVRTNQSNLILDTLYEKLSKAVDKKLIFVAS PEKPFDVIITDIFSEVSVKSTVPTYYVDFSASIGELAQSLENLNTQIVTKQSPRHF >gi|308151731|gb|GL476291.1| GENE 159 152629 - 152808 334 59 aa, chain - ## HITS:1 COG:no KEGG:EF0083 NR:ns ## KEGG: EF0083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 77 100.0 2e-13 MPNDERILNVLQQTLTEIQRMNTRLAKIETELADVDQHHATLDHYLQELELVTENNNVM >gi|308151731|gb|GL476291.1| GENE 160 152829 - 154064 1427 411 aa, chain - ## HITS:1 COG:lin1217 KEGG:ns NR:ns ## COG: lin1217 COG0477 # Protein_GI_number: 16800286 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 391 4 386 401 467 67.0 1e-131 MTEQTPTKLLNKGFISITVINFIVYLVYYLLMVIIAVIAQDSLHATLGQAGLASGIYIIG TLLARLFMGKLLELIGRKQVLRYGALFYLLTTVAYMYMPSMGILYLVRFLNGFGYGTVST ATNAIVTAYIPKNKKGEGINYYGLSTSLAAGIGPFIGMLLLNVSNFHVIINFSIILILLT TIACFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLSFLSSYV KVIDLVDVSTFFFIVYAVVITLTRPSTGRIFDVKGERYVMYPSYIFLTLGLFLLSMTTSG WMLLVSGGLIGLGYGTFMSNGQAVCLQESPSPHRIGIALSTYFIGLDLGLGVGPYVLGEL RNFMSFQQMYFLAGCIPIVCTILYMVFHKAKNDAKDLSLETIEEIEHGSEL >gi|308151731|gb|GL476291.1| GENE 161 154431 - 154673 499 80 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 79 1 79 82 68 69.0 3e-12 MGFIWALIVGGVIGAIAGAITKKGSSMGIIANIIAGLVGSTIGQAILGTWGPSLAGMAIV PSIIGAVILVAIVSWILGRK >gi|308151731|gb|GL476291.1| GENE 162 154697 - 155257 1011 186 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 184 202 167 55.0 1e-41 MSNEKFNNVPKPAGNGPHTPEDHAIKGELTFEDKVVQKIIGLALENVDGLLTVDGGFFSN IAEKLVNTDNVTAGIDTEVGKKQVAVDMDIVVEYGKDIQDIYEKMKELISREVKKMTHLD VIEVNVNVVDIKSKEEYEEDSETVQDKVTGAAKSTGEFASEQTEKAKKAVNKGTEQVKEN MEPRVE >gi|308151731|gb|GL476291.1| GENE 163 155316 - 155828 771 170 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 170 23 184 202 149 51.0 2e-36 MENANVSIVKGELTFEDKVIQKIIGIALEEVDGLLTVDGGFFSNLRDKMINSEDVTTGIH TEVGKKQVAVDMDIVAEYGKDIETIYDQMKEVITREVQQMTHLEVIEVNVNVVDIKTQAE YQEESETVQDKLGNAAEATGSFMSKQTNKAKHAVTKGKTKVKENTAPRVQ >gi|308151731|gb|GL476291.1| GENE 164 155841 - 156032 335 63 aa, chain - ## HITS:1 COG:no KEGG:EF0078 NR:ns ## KEGG: EF0078 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 79 100.0 5e-14 MVEWIKQYAVPLIGGLVGLVFAILFLSIGFFKTLLVVLLTGLGIWLGLYLEQTGIVKNYF HHK >gi|308151731|gb|GL476291.1| GENE 165 156045 - 156617 669 190 aa, chain - ## HITS:1 COG:no KEGG:EF0077 NR:ns ## KEGG: EF0077 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 190 1 190 190 314 99.0 1e-84 MNKVVKILLLLGSLILMALFGAVAITTWSADTAWQPPDNVQWFLQDNEYARQAIFWVALV LLGIMLFLFLFILLFPRRKGTFELKEEQGKLVLHRKAIEGFVRSSLQDSDFLEAPTIRVK TTKRRIKVNVKGTLKRTADLIGQTEAWSKTMEERLARLVGTGHKITIDVHFEDIQSMKRP QQQQTQARVE >gi|308151731|gb|GL476291.1| GENE 166 156630 - 157523 175 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 54 270 7 223 259 72 26 2e-11 MTEPNLKDPRKLFYSDGFPQQDQETPALQDKMVPKPDCGEDSYVGNHKLENRRVLITGGD SGIGRAAAIAFAREGADIALHFFPGEEKDAEEVAHYIREAGRKVVLLPADLRDKQAPEKL VAQAHEALGGLDTLVLNAAQQISCAAIEELPMEQVIDTFHVNIIAMFGIVKAAVPHLPAG SSIVTTTSVQAFNPSEHLLDYAATKASIANFTVGLAKQLAPKGIRVNGVAPGPIWTPLQL DHGQPIEELPEFGQHSLLERAGQPAELAPVYVFLASNDASYVTAQVYGVTGGEAINL >gi|308151731|gb|GL476291.1| GENE 167 157797 - 158450 767 217 aa, chain + ## HITS:1 COG:lin1218 KEGG:ns NR:ns ## COG: lin1218 COG0664 # Protein_GI_number: 16800287 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Listeria innocua # 2 216 3 218 219 275 64.0 6e-74 MRNVLQDYLDEHSFRVVVKKKKNYLTYEGLQDRYAYILKSGIIKTSVISKDGREFNLRYI NNLEIVSLLRDEYSEFIDAPFNIRIESPQAELYQIDRVQFWRDINNSKDLQMYVKEYYRD RLMHSMKKMQQMLMNGKFGAVCTQIYEMYDSFGVETEEGILIDFVVTNEEIAHFCGITSA SSVNRMMQQLKELGAIELRNRKILIKDLDMIRDNIIV >gi|308151731|gb|GL476291.1| GENE 168 158493 - 159410 772 305 aa, chain - ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 564 99.0 1e-159 MDVLGALKYFRKKKKIAQKDVLPKKGKQTYRRIEIGEAKLSYEDLMTALQSLGITFNEFF FMVSDTRIMASSEVKHQIECCQMGLNNTSEKKNLIHYFYQLERNPHKNALEMSIYTDIKL TFSNDWEEIPEFDETDRMVILALISSKSYYTYCDYQMVTNPAALFSENEVLQILEQMFPV KDAELRDTQTLNVAYGFYLNIITGELYKKNYAKAREYLALVSVTTIPAEIYYIHFNLRYL KNLTYYLYTGKMRYYKEVIAVIDMIESFGDVRLAEGMKKEMLQLTAGRTFNLEKGQFPLN IVTEK >gi|308151731|gb|GL476291.1| GENE 169 159490 - 159582 68 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIKILQYYNYGNNKNEYFEIFINVFADFV >gi|308151731|gb|GL476291.1| GENE 170 159998 - 161236 1433 412 aa, chain - ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 409 354 762 779 780 99.0 0 MSYKWFIGMWAWDSWKADVATADFNPELAKNNMRALFDYQIQKDDTVRPQDAGAIIDAVF YNQDSARGGEGGNWNERNSKPPLAAWAVWHIYQETKDKEFLKEMYPKLVAYHNWWYTNRD HNKNGIAEYGSMVSDAHWQKDDKDQIIKDKNGQPKVDDDAVIEAAAWESGMDNATRFDKE GVGKGDVGVKVFENKNKGKVVGYSINQESVDLNAYLYAEKGYLASIAEELGKKEDYKNYQ KEAKKLKKYIQENMFDEKTGFFYDLQINEDGSKTKLLVNRGKGTEGWLPLWAKVATKEQA AAVKKNMMNQEMFNTFMPFPTASKDNEKFAATKYWRGPVWLDQALFGVEALQNYDYTKEA KEMTQKLFLHAEGLMGEGPIHENYDPLTGKGLSTKNFSWSAAAYFYCIKTPY >gi|308151731|gb|GL476291.1| GENE 171 161384 - 162295 953 303 aa, chain - ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 779 563 98.0 1e-159 MKGLSKKKRMSTWLALGITVVSCFALSGEVQASVERTKVDEFANVLDVSASPTERTNGVY DTNYFNNFSDLGAWHGYYLPEKSNKELLGGFAGPLIIAEEYPVNLAASLNKLTVKNKKTG DTYDLSQSNRMDLSYYPGRLEQTYELDDLTIHLALIFVSNRTALIQTTLENTGEEPLSLE ASWTGAVFDKIQEGTETLDIGTRLTAKDNDIQVNFGEVREMWNYFATKDTKYTIHHADKV STKIDNRNYTATAEPIELKPKQTYNTYTTESYTFTKEEEAKEQQQAPEYTKNAARYFKEN KQR >gi|308151731|gb|GL476291.1| GENE 172 162313 - 162387 56 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIALYTLIYYQQGLCQMECIPFYY >gi|308151731|gb|GL476291.1| GENE 173 162473 - 163168 744 231 aa, chain - ## HITS:1 COG:BB0644 KEGG:ns NR:ns ## COG: BB0644 COG3010 # Protein_GI_number: 15594989 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Borrelia burgdorferi # 4 228 6 229 232 245 58.0 6e-65 MNKEIKGALIVSCQALADEPLHSSFIMSKMALAAKQGGAKGIRANSVVDIRAIRKEVDLP IIGIIKRDYPDAEVYITATMREVDELMAVQPEIIALDATHSKRPNGETLATFFKRIKEKY PNQEWMADCSTLEEMIEAAELGFDYIGTTLVGYTPQSENQRIEQNDFELLREAKKHFTTP IIAEGMIDTPAKVQRVLELGAYSVVVGSVITRPQKITEKFVEATKIKQNQA >gi|308151731|gb|GL476291.1| GENE 174 163393 - 163821 368 142 aa, chain + ## HITS:1 COG:no KEGG:EF0068 NR:ns ## KEGG: EF0068 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 142 4 145 145 260 97.0 1e-68 MTEYIYLASEQPLSTGSITLNGLSKPTGNLLNKEFFFFINDFEGDPPGKFSYSNYLKTLN YQVCSMCSLPSDNQNIETPSAVALLGYIRNHFKNTCTTKLYILSALNGFENKPISKTVTR KLSDLSYKDLYYQEMKLLKIIR >gi|308151731|gb|GL476291.1| GENE 175 163945 - 164961 1446 338 aa, chain - ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 334 3 331 332 466 71.0 1e-131 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDYLEGHKN >gi|308151731|gb|GL476291.1| GENE 176 164974 - 165630 786 218 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 15 217 1 197 197 191 53.0 1e-48 MEHMYAISNWKGDNMYEYIIGKVTFVSPYYIVVETNGIGYQISVDNPYRYSGKMDTDIKL YLHQVVREDAQLLFGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGED VTYLTKFPGVGKKTAQQMILDLKGKLGELESSEAAVAAMTATEALTTSNQALAEALEALS ALGYSDREIKRITKQLEALGETTTDVYLSNALKFMMKR >gi|308151731|gb|GL476291.1| GENE 177 165835 - 166227 310 130 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315168283|gb|EFU12300.1| ## NR: gi|315168283|gb|EFU12300.1| Abi-like protein [Enterococcus faecalis TX1341] # 1 130 195 324 324 273 99.0 4e-72 MILGIPKEIADEGITNMFTDIIFLCHSYRNRAAHGGRMYNYRSAKAVIRYSENFHPRANI TQAEYRKGKGISCLGTLFHALTWMDNKVALARLQAGVSVALDQHLKVYPEDYDLVLSESN INPKFLQLSR Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:28:17 2011 Seq name: gi|308151730|gb|GL476292.1| Enterococcus faecalis TX4000 genomic scaffold Scfld118, whole genome shotgun sequence Length of sequence - 1932 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 431 - 1813 996 ## COG0550 Topoisomerase IA + Term 1817 - 1854 5.3 Predicted protein(s) >gi|308151730|gb|GL476292.1| GENE 1 431 - 1813 996 460 aa, chain + ## HITS:1 COG:BH3387 KEGG:ns NR:ns ## COG: BH3387 COG0550 # Protein_GI_number: 15615949 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus halodurans # 32 434 284 695 721 233 36.0 8e-61 MLAFVSSKQAKIGNQEGIIADVQTKEKKTNSPSLFSLSSLQSKVNQLYKATASQTLKATQ GLYEAKLLSYPRTDTPFITENEFAYLKANFGKYSGFLGLDLEMVQTEPRKRYVDGSKVQE HHAIIPTKQVPTESALAKMDDLQRKIYALVVKTTVAMFLPDYLYEETKIQTKVADLLFQS IGKTPKQEGWKILFKQQTKEEKEDVQTLPLVIIGERAEVDVKSVEKETQPPKAFTEGTLL TAMKTANKTVDDEEAIKILQEVEGIGTEATRASIIEALKQKKYIQVIKNKLVVTEKGKLL CQAVESKHLLTSAEMTAKWETYLKKIGKREGNQENFITNIKKFIVHLLEAVPNDIEKLNF SDYQEQKEKEAEKSIVGKCPKCGNNIVLKKSFYGCSNYPECKFTLAEHFRKKKLTKTNVK ELLEGKETLVKGIKNKEKKPYNAVVKIGEKGYIDFISFSK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:28:18 2011 Seq name: gi|308151729|gb|GL476293.1| Enterococcus faecalis TX4000 genomic scaffold Scfld119, whole genome shotgun sequence Length of sequence - 968 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 125 - 968 222 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|308151729|gb|GL476293.1| GENE 1 125 - 968 222 281 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 277 116 390 391 268 48.0 7e-72 MSEIADLIEKMYGHHYTPQTMSNITKSFTEEVTAFKGRELHDRYAAIYMDATYILLKRKT VAKEAIHIAVGIRPDGSKEVLSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGM VGAISRFYPKARFQHCCVHVSRNISHKVRVDDRKEVCDDFKMVYQASSKEVALEARGAFA EKWKTSYPKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNE ESMERFLVSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLI Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:28:19 2011 Seq name: gi|308151728|gb|GL476294.1| Enterococcus faecalis TX4000 genomic scaffold Scfld128, whole genome shotgun sequence Length of sequence - 810 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 75 - 332 330 ## COG3316 Transposase and inactivated derivatives 2 1 Op 2 1/0.000 + CDS 339 - 503 189 ## COG3316 Transposase and inactivated derivatives 3 1 Op 3 . + CDS 568 - 756 100 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|308151728|gb|GL476294.1| GENE 1 75 - 332 330 85 aa, chain + ## HITS:1 COG:pli0012 KEGG:ns NR:ns ## COG: pli0012 COG3316 # Protein_GI_number: 18450298 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 85 1 85 226 153 98.0 7e-38 MSHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQ IWKKKNKKSFYSWKMDETYIKIKGK >gi|308151728|gb|GL476294.1| GENE 2 339 - 503 189 54 aa, chain + ## HITS:1 COG:pli0028 KEGG:ns NR:ns ## COG: pli0028 COG3316 # Protein_GI_number: 18450311 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 48 89 136 226 93 97.0 1e-19 MYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPLYYKCL >gi|308151728|gb|GL476294.1| GENE 3 568 - 756 100 62 aa, chain + ## HITS:1 COG:pli0028 KEGG:ns NR:ns ## COG: pli0028 COG3316 # Protein_GI_number: 18450311 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 62 165 226 226 121 98.0 3e-28 MIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGI PA Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:28:42 2011 Seq name: gi|308151727|gb|GL476295.1| Enterococcus faecalis TX4000 genomic scaffold Scfld159, whole genome shotgun sequence Length of sequence - 78338 bp Number of predicted genes - 71, with homology - 68 Number of transcription units - 37, operones - 17 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 263 - 306 12.6 1 1 Tu 1 . - CDS 308 - 1321 1021 ## COG0657 Esterase/lipase - Prom 1345 - 1404 5.9 + Prom 1399 - 1458 7.8 2 2 Tu 1 . + CDS 1487 - 2032 580 ## COG1335 Amidases related to nicotinamidase + Term 2211 - 2237 -1.0 - Term 2198 - 2224 -1.0 3 3 Op 1 23/0.000 - CDS 2229 - 2912 988 ## COG1346 Putative effector of murein hydrolase 4 3 Op 2 2/0.000 - CDS 2909 - 3328 543 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 3359 - 3418 7.6 - Term 3427 - 3475 13.4 5 4 Op 1 9/0.000 - CDS 3480 - 4208 868 ## COG3279 Response regulator of the LytR/AlgR family 6 4 Op 2 . - CDS 4219 - 5958 1618 ## COG3275 Putative regulator of cell autolysis - Prom 5978 - 6037 7.4 - Term 5992 - 6043 9.2 7 5 Op 1 22/0.000 - CDS 6050 - 6868 986 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 8 5 Op 2 32/0.000 - CDS 6881 - 7552 729 ## COG2011 ABC-type metal ion transport system, permease component 9 5 Op 3 . - CDS 7549 - 8271 366 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 8436 - 8495 6.7 - Term 8428 - 8497 5.0 10 6 Tu 1 . - CDS 8633 - 9025 295 ## COG1765 Predicted redox protein, regulator of disulfide bond formation - Prom 9094 - 9153 5.7 + Prom 8998 - 9057 5.3 11 7 Tu 1 . + CDS 9232 - 9501 457 ## PROTEIN SUPPORTED gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 + Term 9545 - 9574 0.4 + Prom 9520 - 9579 2.5 12 8 Op 1 . + CDS 9612 - 9761 247 ## PROTEIN SUPPORTED gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 13 8 Op 2 . + CDS 9777 - 10751 1023 ## COG0523 Putative GTPases (G3E family) 14 8 Op 3 . + CDS 10786 - 10908 150 ## 15 8 Op 4 . + CDS 10929 - 12464 1539 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 12475 - 12524 10.1 - Term 12462 - 12512 14.1 16 9 Tu 1 . - CDS 12522 - 13496 1059 ## COG0042 tRNA-dihydrouridine synthase - Prom 13566 - 13625 7.6 17 10 Op 1 45/0.000 - CDS 13688 - 14458 833 ## COG0842 ABC-type multidrug transport system, permease component 18 10 Op 2 . - CDS 14451 - 15386 963 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 15460 - 15519 4.0 + Prom 15374 - 15433 4.0 19 11 Op 1 9/0.000 + CDS 15643 - 16062 598 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 20 11 Op 2 13/0.000 + CDS 16075 - 16566 728 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 21 11 Op 3 13/0.000 + CDS 16583 - 17398 1095 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 22 11 Op 4 . + CDS 17395 - 18222 918 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 23 11 Op 5 . + CDS 18370 - 20889 2186 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 20942 - 20986 13.1 - Term 20926 - 20973 2.3 24 12 Tu 1 . - CDS 21036 - 21596 360 ## gi|229547362|ref|ZP_04436087.1| conserved hypothetical protein - Prom 21638 - 21697 4.0 - Term 21681 - 21720 8.1 25 13 Tu 1 . - CDS 21746 - 21856 58 ## - Term 22252 - 22299 1.8 26 14 Op 1 . - CDS 22352 - 24424 967 ## Acid345_4269 hypothetical protein 27 14 Op 2 . - CDS 24415 - 25323 451 ## SUN_2432 hypothetical protein 28 14 Op 3 . - CDS 25320 - 27953 1374 ## Acid345_4267 endonuclease 29 14 Op 4 . - CDS 27946 - 29397 512 ## Acid345_4266 hypothetical protein 30 14 Op 5 . - CDS 29390 - 30547 402 ## COG0270 Site-specific DNA methylase - Prom 30782 - 30841 9.0 - Term 31431 - 31475 11.8 31 15 Op 1 59/0.000 - CDS 31567 - 31959 653 ## PROTEIN SUPPORTED gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 32 15 Op 2 . - CDS 31973 - 32518 930 ## PROTEIN SUPPORTED gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 - Prom 32550 - 32609 4.3 - Term 32584 - 32619 4.0 33 16 Tu 1 . - CDS 32638 - 33105 575 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 33157 - 33216 5.9 34 17 Op 1 . - CDS 33233 - 33952 586 ## EF3234 putative lipoprotein 35 17 Op 2 . - CDS 34036 - 35556 1512 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 35577 - 35636 7.4 + Prom 35536 - 35595 7.3 36 18 Tu 1 . + CDS 35665 - 36357 231 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases + Term 36370 - 36408 4.2 - Term 36349 - 36401 12.1 37 19 Op 1 58/0.000 - CDS 36406 - 40059 4609 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 38 19 Op 2 . - CDS 40226 - 43840 849 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 43900 - 43959 9.8 39 20 Op 1 . - CDS 44211 - 44552 353 ## COG2337 Growth inhibitor 40 20 Op 2 . - CDS 44552 - 44782 282 ## gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein - Prom 44852 - 44911 4.6 - Term 45147 - 45180 3.1 41 21 Tu 1 . - CDS 45188 - 45403 296 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain - Prom 45423 - 45482 4.6 + Prom 45234 - 45293 6.6 42 22 Tu 1 . + CDS 45542 - 46534 1041 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase + Term 46559 - 46604 14.1 - Term 46614 - 46647 -0.9 43 23 Tu 1 . - CDS 46798 - 47436 560 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 47568 - 47627 7.5 + Prom 48045 - 48104 2.0 44 24 Tu 1 . + CDS 48124 - 49740 1336 ## COG1316 Transcriptional regulator + Term 49745 - 49794 5.1 + Prom 49903 - 49962 9.4 45 25 Tu 1 . + CDS 50012 - 50155 151 ## EF3247 hypothetical protein + Term 50246 - 50287 8.1 + Prom 50558 - 50617 10.6 46 26 Tu 1 . + CDS 50768 - 50872 121 ## + Term 50948 - 50986 5.0 - Term 51006 - 51063 14.7 47 27 Op 1 . - CDS 51067 - 52059 1041 ## EF3250 hypothetical protein 48 27 Op 2 . - CDS 52087 - 54942 2196 ## EF3075 hypothetical protein 49 27 Op 3 . - CDS 54923 - 55291 320 ## EF3076 cell wall surface anchor family protein - Term 55554 - 55602 11.0 50 28 Op 1 1/0.143 - CDS 55678 - 56625 959 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 51 28 Op 2 1/0.143 - CDS 56639 - 57706 1203 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 57748 - 57807 6.2 - Term 57844 - 57898 9.4 52 29 Tu 1 . - CDS 57962 - 58891 1260 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein - Prom 58946 - 59005 6.3 + Prom 58953 - 59012 6.3 53 30 Tu 1 . + CDS 59169 - 61115 2171 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 61190 - 61241 12.2 + Prom 61556 - 61615 5.8 54 31 Op 1 3/0.000 + CDS 61644 - 62066 530 ## COG5341 Uncharacterized protein conserved in bacteria 55 31 Op 2 2/0.000 + CDS 62078 - 62635 616 ## COG4769 Predicted membrane protein 56 31 Op 3 . + CDS 62673 - 63659 918 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 63664 - 63707 9.9 57 32 Tu 1 . + CDS 63726 - 63974 298 ## PROTEIN SUPPORTED gi|229547905|ref|ZP_04436630.1| acetyltransferase including N-acetylase of ribosomal protein family protein 58 33 Tu 1 . + CDS 64661 - 65473 550 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 65611 - 65669 12.1 - Term 66312 - 66376 22.3 59 34 Op 1 . - CDS 66388 - 67179 930 ## COG0294 Dihydropteroate synthase and related enzymes 60 34 Op 2 . - CDS 67172 - 67765 212 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 61 34 Op 3 2/0.000 - CDS 67769 - 68329 697 ## COG0302 GTP cyclohydrolase I 62 34 Op 4 17/0.000 - CDS 68332 - 68817 540 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 63 34 Op 5 . - CDS 68818 - 69180 465 ## COG1539 Dihydroneopterin aldolase - Prom 69212 - 69271 4.6 + Prom 69211 - 69270 4.6 64 35 Tu 1 . + CDS 69358 - 70131 542 ## COG1396 Predicted transcriptional regulators + Term 70194 - 70244 11.1 - Term 70190 - 70223 5.4 65 36 Op 1 . - CDS 70246 - 71595 466 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 66 36 Op 2 . - CDS 71682 - 72080 551 ## EF3271 hypothetical protein 67 36 Op 3 . - CDS 72103 - 73242 988 ## COG2856 Predicted Zn peptidase 68 36 Op 4 . - CDS 73220 - 73885 704 ## EF3273 hypothetical protein - Prom 73927 - 73986 8.8 - Term 74022 - 74062 -0.9 69 37 Op 1 5/0.000 - CDS 74148 - 75701 2040 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit 70 37 Op 2 2/0.000 - CDS 75702 - 76796 1378 ## COG3535 Uncharacterized conserved protein 71 37 Op 3 . - CDS 76816 - 78084 1510 ## COG1457 Purine-cytosine permease and related proteins - Prom 78106 - 78165 11.1 Predicted protein(s) >gi|308151727|gb|GL476295.1| GENE 1 308 - 1321 1021 337 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 60 334 50 318 347 152 31.0 7e-37 MKRKIVRFILWLLGILVVICLGVFLAFQLSPKPGAWVINQLFAGEVEIKDSASYDKALPN VQFQENQTYPSSRKKNTFDLYYPQTSKQAVPVVLWVHGGGYVGGDKSGMKEFATRLVADS SVAFISMNYELAPDAPYPSQLQQVNELVQFLLEKKQAYPMLDLSKLFIGGDSAGAQIALQ YATVQTNANYAKELGMTAALPASHLKGTLSYCGPVDLKQMANQQSDNRFMKFFVKTVAWS LLGTKDWQTSAELQEVSLVDKVTKEFPPTYLTDGNSFSFQEQGLALVQRLKTLNVPVSAL FFKDKKATITHEYQFDYQTKEAKQCYQETVQFVNTYK >gi|308151727|gb|GL476295.1| GENE 2 1487 - 2032 580 181 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 180 3 181 183 240 60.0 1e-63 MKALISIDYTNDFVATDGKLTTGAAGQAIETALVQQTKHYFDNGDFVVFAIDGHDPLDRY HPENKLFPPHNVLGTDGRNLFGSLADFYQAHKNEASVYWMDKRHYSAFSGTDLDIRLRER GITELCLTGVCTDICVLHTAVDAYNLGYQLMIPEHAVASFDEQGHEWALRHFKQTLGATI L >gi|308151727|gb|GL476295.1| GENE 3 2229 - 2912 988 227 aa, chain - ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 1 226 5 230 231 241 66.0 8e-64 MNPYVGIIISLAVFGIGTWLFKKSKGFFLFTPLFVAMILGVVVLKVTGISYEQYNEGGKY ISFFLEPATVAFAIPLYKKRDVLKKYWLEILTALTIGSFGSLVAVYFAGKVIGMDNHLVA SILPQAATTAIAVPISQTVGGIASITAFTVIFNGVLTYALGRIALKWFKINNPIAKGLAL GAAGHALGVAVGMEMGETEAAMASISVVVVGVVTVLVVPFFATVIGL >gi|308151727|gb|GL476295.1| GENE 4 2909 - 3328 543 139 aa, chain - ## HITS:1 COG:BS_ysbA KEGG:ns NR:ns ## COG: BS_ysbA COG1380 # Protein_GI_number: 16079943 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 3 134 4 135 146 112 58.0 3e-25 MEKKVYSFLQQAAVFAIIMLIANGLAFISPIPMPASVIGMVLLFIGLCTKVVKLEQVEGL GNSLSTVITFLFVPSGISLVNSLGIMQQFGVQIVFVILVATLALLATTGWTGAFLLHMKD ARKEKEPAATKKAKGEVRA >gi|308151727|gb|GL476295.1| GENE 5 3480 - 4208 868 242 aa, chain - ## HITS:1 COG:BS_lytT KEGG:ns NR:ns ## COG: BS_lytT COG3279 # Protein_GI_number: 16079944 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Bacillus subtilis # 1 239 2 239 241 202 45.0 4e-52 MHVLIVDDEPLAREELSYLVSQHPQVTSVAEADSVAEAMEEMMDQKPDLLFLDIHLTDES GFDLAEKLTHLKKAPYLVFATAYDQYALKAFQVNAKDYILKPFEEEKITQVIEKASKEMA QAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEERQLSIFVDQQIYKMTGTLNS IEQKLPATLFIKTHRSFILNRTKIQEIQPWFNNTLQVILTNGSKVPVSRSYVKEFKEKLG LS >gi|308151727|gb|GL476295.1| GENE 6 4219 - 5958 1618 579 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 568 1 569 584 622 56.0 1e-178 MVELFILMMERVGLIILLAFLLVNVPYFKRVLLSREKMSSKVQLILIFGLFAIISNFTGI EIAKNQIVPNNLLTYLSSNASIANTRTLVIGVSGLVGGPIVGSTVGLIAGFHRVIQGGGH SFFYVPASLIVGLIAGFLGSRMAKQTVFPSAGFSAIVGACMEMIQMIFIFFFSGDLADGA TLVRFIALPMILLNSVGTFIFMSILTTTLKQEEQAKAVQTHDVLELAAETLPYFREGLNK NSSKKVAEIIKHYTKVSAISMTNSHQILAHVGAGSDHHIPELEVITELSREVLRTGQMTI AHAKEEVGCSDPNCPLQAAIVIPLFSHQQIVGTLKMYFTDPAQLTHVEEQLAEGLGTIFS SQIELGEAEVQSKLLKEAEIKSLQAQVNPHFFFNAINTISALMRKDSEKARKLLLQLSKY FRGNLQGAVQTTIPVSQELEQVKAYLSLEQARFPNRYQVTFDVEEAVASEKVPPYAIQVL VENTIKHAFGSRKENNQVRVVVKAKQHKLHVDVYDNGQGIPEERRLLLGKTTVTSEKGTG TALENLSRRMANLYGSEGCFLIENLETGGSHVHLEIPME >gi|308151727|gb|GL476295.1| GENE 7 6050 - 6868 986 272 aa, chain - ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 34 272 24 257 257 142 38.0 6e-34 MKKFYLATFAVIATVILAACGGNKQADQKEDKEITVAVQLESSKDILEIAKKEAEKKGYK INIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYSKE YQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFE SIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDEEASKHYALQVVTRKGEKD SEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF >gi|308151727|gb|GL476295.1| GENE 8 6881 - 7552 729 223 aa, chain - ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 12 222 6 216 219 120 42.0 3e-27 MTFSETFAEYWPSMLIGLKETGIMMSISMAICLLVGLPLGLGLFLANPKVKGHQPWLYWV LNFIVTVIRSFPYLLFVIALIPVTRSVLGKAFGPIPSSVPLSIVAIAIFARLVEQVLLDV PEEIYFLANSLGTSKVQYIWHFLLVEARSGLVLAYTTTTVSMVSYSTVMGVVGGGGIGDF AVRVGYQRYEYGIMYVAIVIMIALVFILQMLGNFIAQKLDKRK >gi|308151727|gb|GL476295.1| GENE 9 7549 - 8271 366 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 230 245 145 36 6e-34 MIELVNVSKVYQETHALKNIHFSVQPGEIVGIVGKSGSGKSTLLRLLNLMEQPSEGEIRI DGRNVQTFSKKEVRQQQQQMGMVFQHYNLLENLKIYDNVALPLKLLKEKQPEKIERLLTF VDMDHKAEAYPAQLSGGEKQRVSIARALSRNPKWLLCDEATSSLDEENTESVVRLLHKTH QEFRPTIFFVSHELETVKRLCNRILVMEKGQLIGEFLNNPQQYEEEPLSYLEKVERSLRP >gi|308151727|gb|GL476295.1| GENE 10 8633 - 9025 295 130 aa, chain - ## HITS:1 COG:lin0902 KEGG:ns NR:ns ## COG: lin0902 COG1765 # Protein_GI_number: 16799975 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 129 1 126 126 83 35.0 9e-17 MVERLTIIRGVEKFELQTKTARWVLAKEEGYSPVQMLVSAIGACGGYVYQSVLENSHIPF EFEKIEVTYSREVERRAQPLKQVTILFYVSVPEDFQARATRCLKLVSPNCPVIQSLAERI TVEETVVFKK >gi|308151727|gb|GL476295.1| GENE 11 9232 - 9501 457 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 89 1 89 89 180 100 2e-44 MAKKSKIAKAKKQQAMIAKYAPIRQALKEAGDYEGLSKLPKDAHPSRLKLRDQTDGRPRG YMRKFGMSRIRFRELAHQGLIPGVKKASW >gi|308151727|gb|GL476295.1| GENE 12 9612 - 9761 247 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 99 100 4e-20 MRQTITLACAETGERLYLTSKNKRNTPEKLQLKKYSPKLRRRALFTEVK >gi|308151727|gb|GL476295.1| GENE 13 9777 - 10751 1023 324 aa, chain + ## HITS:1 COG:BMEI0036 KEGG:ns NR:ns ## COG: BMEI0036 COG0523 # Protein_GI_number: 17986320 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Brucella melitensis # 3 318 5 360 388 165 30.0 1e-40 MGIPITIVSGFLGAGKTTLINHALAQSPFPKEEIIIIENEFGQTGVDHALLLQTTERIIQ LNNGCMCCSLRGDLLASLSAILEVYQEEQQTVAQVILETTGIADPQPIIQTILTTPHIKN HFYIDSLLTVVDGHHWQQQLQETEAIKQLALADRLFFSVKEPADSTQLPTFQETLRTINP FADILSFQANEPLLASDFFQLNKFTATLTEHEMTHSPHEHAHEHHHHTFHSLTLTASSAL NEPLFTRWLDWLMYTHQEKLYRFKGILALQEHDLAIAMQGVNQQVAFQMTNHPPQETTIV LIGKELETKKIQETFQTLNKIATP >gi|308151727|gb|GL476295.1| GENE 14 10786 - 10908 150 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKTDLSSAYRRLKSPNIKTRKRALKIIKEHKRNKQKKIA >gi|308151727|gb|GL476295.1| GENE 15 10929 - 12464 1539 511 aa, chain + ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 322 322 322 52.0 1e-87 MKKFTLPLLAALSLILFGACGKTNTSDKTADGKEKLSIVTTFYPMYDFTKNIVGDEGDVK LLIPAGSEPHDYEPSAKDMATIHDADVFVYHNENMESWVPKAAKGWKKGAPNVIKGTENM VLLPGSDEDGHDHDHEHGEEGHHHELDPHTWVSPHRAIQEVTNIKEQLVKLYPKKAKTFE TNAEKYLTKLTALDKEFQTALKDAKQKSFVTQHAAFGYLALDYGLKQVPIAGLTPEQEPT AGRLAELKKYVTDNQIRYIYFEKNANDKIAKTLADEANVQLEVLNPLESLTQKQMDNGED YLSVMKENLTALKKTTDTAGKEVQPETSEKTEKTVANGYFKDSEVAERTLTDYAGNWQSV YPLLKDGTLDQVFDYKAKLKKDKTPAEYKTYYDAGYQTDVDHINITDSTIEFLVDGKPQK FTYKATGYKILNYAKGNRGVRFLFETDDANAGRFKYVQFSDHNIAPTKAAHFHIFFGGDS QESLFNEMDNWPTYYPSDLSKQEIAQEMIAH >gi|308151727|gb|GL476295.1| GENE 16 12522 - 13496 1059 324 aa, chain - ## HITS:1 COG:BS_yfjN KEGG:ns NR:ns ## COG: BS_yfjN COG0042 # Protein_GI_number: 16077870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Bacillus subtilis # 1 320 1 320 325 490 76.0 1e-138 MSKNFWATLPKPFFVLAPMEDVTDVVFRHVVKEAGAPDVFFTEFTNSDSYCHPEGKDSVR GRLVFTEDEQPMVAHIWGDKPEFFREMSIGVAEMGFQGLDINMGCPVPNVAERGKGSGLI LRPEVAAELIDAAKAGGLPVSVKTRIGFTEMAEMEAWITHLLEQDIANLSIHLRTRKEMS KVDAHWEVIPQIMSIRDRVAPQTTITINGDIPDRQKGLELAEQYGVDGIMIGRGIFKNPY AFEKEPKTHTPQELLGLLRLQLDLQDKYAELVPRSIVGLHRFFKIYVKGFPGASDLRAQL MNTKSTDEVRQLLATFEAEHGVLD >gi|308151727|gb|GL476295.1| GENE 17 13688 - 14458 833 256 aa, chain - ## HITS:1 COG:lin0673 KEGG:ns NR:ns ## COG: lin0673 COG0842 # Protein_GI_number: 16799748 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 256 1 256 256 373 84.0 1e-103 MFSLYFTALKSLAVKETNRYLRIWVQTLVPPVITTSLYFVIFGKMIGGRIGDMGGFSYME FIVPGLIMMSAITSSYANVSSSFFSQKFQKNIEEILVAPVPTHVIIWGFVIGGVGRSILV GALVTIISLFFVPLHVVSWLMVIMTLLMTAILFSLAGLLNGIFAQSYDDVSIVPTFVLQP LTYLGGVFYAISMLPPFWQAVSKVNPIVYMISGFRYGFLGVQDVPIGISMTILILFIVVL YGICWYLVETGRGLRS >gi|308151727|gb|GL476295.1| GENE 18 14451 - 15386 963 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 301 1 303 311 375 65 1e-103 MTDALVIQDLRKVYASGVEALRGIDLTVEEGDFYALLGPNGAGKSTTIGIVTSLVNKTSG KVKIFGYDLDTEMVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAMKRSEKY LKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWAFLQ ELNAQGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKHLLAKLQFETFIFDLAPYT QAPVIEGYQSVFEDELTLAVEVERNQGVNHLFEQLSQQGIKVLSMRNKSNRLEELFLKIT EDTYQREDQHV >gi|308151727|gb|GL476295.1| GENE 19 15643 - 16062 598 139 aa, chain + ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 140 141 146 56.0 9e-36 MKRKFLIASHGNLAKGFQSSLDILADKGKELAVINAYVTPEDYTPIIQTFLQSLGAEEQA IILTDLYGGSVNQKIVQEVMTTKPDNVFIISNANLAIALSLIFLKEGEKLTKEDIQAAIA EAQIQFVELNPSNEEENFF >gi|308151727|gb|GL476295.1| GENE 20 16075 - 16566 728 163 aa, chain + ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 163 163 222 77.0 2e-58 MITQVRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEVMQMTLKMAVPNGMKLLIRS VDDAIDVFNDPRGKDKRIFVIVNSVADATKIAKNVTDIESVNVANAGRFDKSDPATKTMV FPSVQLNPEELEAAKELASLTHVESYNQVLPTNSKLSLKQAVN >gi|308151727|gb|GL476295.1| GENE 21 16583 - 17398 1095 271 aa, chain + ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 271 1 263 263 342 80.0 4e-94 MLMHATMAALAVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGVLMGASLEAIFLG NVNIGGVIAAEPVTATTLATTFAIISNVEQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFA PSLDKAAREGNQKMVVTLHYGTWIIYYLIIASISFIGILAGSGPVNLFVESIPQNLMNGL SAAGGLLPAVGFAMLMKLLWDNKLAVFYILGFVLTAYLQLPAVAVAVIGTVICVVSAQRD VEFRDILKRKPAASSAVEGSAKEIEEEDFFA >gi|308151727|gb|GL476295.1| GENE 22 17395 - 18222 918 275 aa, chain + ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 264 275 422 80.0 1e-118 MKLKENLSKEEKKMMRSVFWRSWTMNASRTGATQYHAVGVMYTLLPVINRFYKTKEERAE ALVRHTTWFNATMHINNFIMGLVASMEKQNSEDENFDASSITAVKASLMGPLSGIGDSFF WGILRVIAAGIGISLASTGSPLGAIVFLLLYNVPAFLIHYYALYSGYSIGESFIQKMYES GGMKILTKVSSMLGLMMMGSMTASNVKFKTILEVSVKGSEDVVKIQDYLDQLFVGIVPLA VTLLAFWLLRKKVNVNVVMFGIMFLGILLGLLGIC >gi|308151727|gb|GL476295.1| GENE 23 18370 - 20889 2186 839 aa, chain + ## HITS:1 COG:STM0571_1 KEGG:ns NR:ns ## COG: STM0571_1 COG1221 # Protein_GI_number: 16763948 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 21 309 28 337 460 248 42.0 3e-65 MRLETYQHLVDILETSNTPMSTQEIATKIQLSRSVTSLYLNKLLEKGEVQQTGKKPVYWQ LTRATTPTTDVFRQYIGSQGSAKKAIEQCKAAMLYPPLGMPLLIHGASGVGKSFLAKLIY EYLKNEQIIGLEKFYTFNCADYANNPELLSSILFGHTKGAFTGAESEKQGLLAQANNSVL FLDEVHRLSNENQEKLFQFMDTGTFRPIGEEGKMVHSKVRLLFATTENPKKVLLPTFYRR ISVIVSLPNFKERPIRERIAILKNLFHREAKRMTKDINVDEEIFTALLENDEPGNVGSLS NKVQLLCASQLRKTLPNQPVVIGDATQPMITIPLDKEVLEEDTLSSDIFATFEALFTKEK TLAHLKTELTQFIKYCLDDEITLENDYFLQNLVTEVQTKNKLIINQPEQTEKPMKDVAKL LKILPPTFNEIMLLPVQAQLKEHYPRTVSLVKNLVSPLPEEYRFLTEVLLSVLLSGEISE TIPYQALLVAHGESTATSIQAVANKLCGTYIFDAINMPLTSSVRDIVAEVKDWLSQRDTS QGVIMLVDMGSLTQLYKSLKPQILGELLVINNLTTAYALEIGHQLMNEQLFYGIAKTAEK KFKTDVQYFEGFSVEKNIIVSSISGLDIAKQIKQICQKYLYTDIKVITLKYKDLVNTLDI ANAEENYLKETSLILTTSYLDNHTNVASVNLLDMLDEDAGTQLMEPFQNLMHPNNIDSMI NEFVHFFSKEGLSEKLEFLNPDVIIKQVENVTKNIEKRFDLTLSGKMKFNLMMHNALMVE RTMLGVEDYEVPANLEELTINQKPFFQNAKNIFYTLEQFYRIEISNWELYVIYEILSSR >gi|308151727|gb|GL476295.1| GENE 24 21036 - 21596 360 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229547362|ref|ZP_04436087.1| ## NR: gi|229547362|ref|ZP_04436087.1| conserved hypothetical protein [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T11] hypothetical protein HMPREF9509_02524 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T11] hypothetical protein HMPREF9509_02524 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_02407 [Enterococcus faecalis TX4000] # 1 186 1 186 186 375 100.0 1e-102 MSSVVCQSCGANAFKWYDTADQVVECKYCHSKQAFIKGMGVESAIKVVGGKEEAETDSEY QERIIHQFGLKDQVIEVKNYSLIDIPLTFIVWLYLDILLGALFICGGFLSKNYRAWYANL LRWHFYGWRYTKSATEKEKASQRIRGSLLIKWLLQEDPNKTKKLIMVGVSILFTVLFVYT TGNGAA >gi|308151727|gb|GL476295.1| GENE 25 21746 - 21856 58 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIIHVVVEILLLVHIYKKGLSLYGVSLKYEDFLGN >gi|308151727|gb|GL476295.1| GENE 26 22352 - 24424 967 690 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4269 NR:ns ## KEGG: Acid345_4269 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 51 690 8 646 654 345 35.0 4e-93 MELKDFHQSFIQQVNEHRQLTGSTFEEAFFENYVDYLVENDEIIGEPNFLHFEMPLSRNQ KACISGFAYNEFDGILYLMIVDDIDFSYEVPTLLLADAERLYKRARNFFLHSEEISKYGE ESNEAVNLAKSIYTRKKNDQNQFYELTSVKVFILTDKPLSRTFKRMEDEQIQEVKISTMI VGIERILSLSESRKGKVDLEIDLNNFQLIPAIKANETDEYESYLCNINGYTLAKLYNDYG SRLIESNVRSFLQTRGKVNKGIRLTILKEPEKFFAYNNGLTCTAKSILFKNNTISEIIGL QIVNGGQTTASLANVLVNEKDGAEKLQEVSVPMKLNVIKNMDIEDELVPAISRYANSQNK VSDVDLASNHPFHKKIEELSRKISTPAADGFSHGTYWYYERAAGQYAQETYKMPTSQRKN FLDRNPKNQMFKKSDFAKYFNIYQKRPDIASKGGQAAFKAFSTWIIQIWDKDSNLVNQEF YKEMVSNIIMFKELDKLTKCGAGSNGYKANINAYTLAYLYWYLEEKMNMKFNYLKIWQQQ SVPQLVLEFMDDISYEIRDILTRVEGNVTEYAKRIVAWDDVKSMVTINRDYDLSSITISK DDVAQLKKTARNNEKFESDFLDTASVYKRLDENPKYYTDMLIFIDGHCKEFLPKERNVIA MLASNKFISDKQSKIALQAIEKAELEGFGI >gi|308151727|gb|GL476295.1| GENE 27 24415 - 25323 451 302 aa, chain - ## HITS:1 COG:no KEGG:SUN_2432 NR:ns ## KEGG: SUN_2432 # Name: not_defined # Def: hypothetical protein # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 61 287 75 303 323 90 28.0 1e-16 MRTDSFVLVPQINATRVYIGIDSRGMESIAIDFACKPDFELVTNKISSRIVSLSDTQRLF ISLVDDDSTTKEIFETFSNDIITSIEVATTEVEVLVIIANRFKYWTELFKRSERTYDEKW IQGFCGELWFLDNVLIDKLGSDMAIRSWIGPEKGNQDFITSDKIFEIKTKLQQANSIRIS NENQLSRDMYLTVIELSRSSEVAANSFNLYKLIASIYAKIKNPKILGEFNRKLLELDLFP TTKAKMYDKYSYEFISLVYFRINRDFPFIDHEDVPSAIIQYSYELSLDNITESKLSEEEV WN >gi|308151727|gb|GL476295.1| GENE 28 25320 - 27953 1374 877 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4267 NR:ns ## KEGG: Acid345_4267 # Name: not_defined # Def: endonuclease # Organism: A.bacterium # Pathway: not_defined # 41 851 39 871 899 429 34.0 1e-118 MVDYELIEKHFNTAKIAIESEKKQTPKDVEAHLNLFKTTIFGMNDDTFNELVNRVLSIVP VSLEPAMTLSKPSPKWFTESRADRGSKRFDAYEQYLQNVLGYSSNVVTTIGNSMDTIMNN IGDPTFEGEFVKKGLVIGDVQSGKTGNFIALMNKAADAGYNMIVITTGTIEKLRRQTQVR IEEGFFGYFTATRNRESKTKTVKDFGNTEQTLALTNADKDFNLKTANPVGFGSAPIVAVI KKNKKSIEDLAEWLENNNQQDINRLGKIDRSILFIDDEADNATVNTKKTEDPTTINLGIR AILNLFQRASYVGFTATPFANIMIDHKNKDDLFPSSFIQVLDTPTNYMGASTIFPEKDEG GIYHSILISNDDAEDYIPIVIPKEDRATFEVQGLPPSMEEAICVFFLQNAIRDLRGDQKK HRSMLINVSHLNRIQDQIKLLVDAYVGELKRQIRHYILDTEKSIHLDMKAIFKEKFNNIP ESWEDVYPTLYKSTDTIETHVINNANKGFQYEDYPNGARVIAVGGFALSRGLTLEGLSTS YLYRNTLMYDTLMQMGRWFGYRPRYDNIVYLYMPERSVDWYYQILQAMNDLKKQIKEMIN EKKTPEDFGYYIREAENRDEATILITARNKMRSARNHDVTIRISGDYKETSKLSINVASR NSNLIEKWFEKNKLLFDSDLLIKDAPKEVAERLLLEYAYGSYNQLNLSVSKEALNNFDKF DIKIGARLGASIDFNSIKEKSRTRAFRYVKEFDLIAFGNSRIGSVRDGQYGLTKQQKEFA KSFKTEKEYFSDFYSNERNPLIVIFPVSLPEPKNADKISHDFWEKNKDNVFWALSLGIPN SDLAPISYKTKMNTVLQQQLLTQRELEAEDEIEEDIE >gi|308151727|gb|GL476295.1| GENE 29 27946 - 29397 512 483 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4266 NR:ns ## KEGG: Acid345_4266 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 7 469 36 507 529 347 39.0 7e-94 MSSFYELVPDASNLIESQRSVGYTFETAIADIVDNSVSANATRIDINFNNQQKYVSILDN GYGMSKIELLQAMKYGSRSIYDLRTQDDLGRFGLGLKMASFSQCRKLTVVSIKDGEYSGA VWDLDVVKKKNAWIVQILNDEEIRNTHRFSELGILSSGTLVIWEKFDKLEQYADFKFNFD ESLEKTENHLSLVFHRFLQENQIDIFFNQRAIDFVDPFFISNKATQPKSSDVIFENSRNA RIDIKPYIVPYQKRLSQKERHVLKKFEHCKLGPGLYIYRNRRLIAWGKWFRLVRPNELAN LARIQIDIPNTIDDLWEIDVKKSQLNIPTSLRTQLRNVITKSIGESERVYKYRGTKRNKD NLQYVFDRVEKDNKVAYYLNMENPLIKQLQENLSDSDIIIFKALLKQIEEHLPLDSIQYD LASNKGFEENEDTDDEIYEEIMLLLSNQTTEKSKKLLLNSLKYSEVYSKKIALLARIERE LNG >gi|308151727|gb|GL476295.1| GENE 30 29390 - 30547 402 385 aa, chain - ## HITS:1 COG:UU528 KEGG:ns NR:ns ## COG: UU528 COG0270 # Protein_GI_number: 13358092 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Ureaplasma urealyticum # 118 376 16 294 299 157 39.0 3e-38 MLKVVEAFSGIGAQKQALEKLNIEHEIINTIEWDINAIYAYDIMHHNDNSPSKLSKHEII ERLANVTLSPDGKKPFSDNGLYRIKEEKLQKLYAAIRRNNNLCDITQVSGDMIPDDTDLL TYSFPCQDLSIGSVWYNKDNDGIRKGAKTRSGLLWEIERILRERIMINVPLPKFLLMENV NAITSPKHNPNFVQWQEELESMGYTNKVYKGLNALDFGVPQSRSRTFMLSIRNKDIEPEE ISNLNYNIQSNLGDYLRFNHKEEIIEATPNYTPSRIKIYNQNRLLAKNGVVKADFTNTIS TKQDRNPNAGVILQDDRMRYLTPRETFLLMGFPECKFEKLMKSNEGNSYFTNSHLYRMSG NSIVVDVLTKIFQEIERLKGIYFNE >gi|308151727|gb|GL476295.1| GENE 31 31567 - 31959 653 130 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 [Enterococcus faecalis V583] # 1 130 1 130 130 256 99 3e-67 MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGA YDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKK ARKASQFSKR >gi|308151727|gb|GL476295.1| GENE 32 31973 - 32518 930 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 [Enterococcus faecalis TX0104] # 1 181 1 181 181 362 99 3e-99 MIEGKILNGIVCPTMSPGNSSVCQTSKTKLEERNVRTTYMAKAGEVERKWYVVDATDVPL GRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLK SVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNL I >gi|308151727|gb|GL476295.1| GENE 33 32638 - 33105 575 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 174 51.0 8e-44 MKFEKTKEILNQLVADLSQFSVVIHQTHWYMRGPEFLTLHPQMDEYMDQINEQLDVVSER LITLDGSPFSTLREFAENTKIEDEIGNWDRTIPERMEKLVAGYRYLADLYAKGIEVSGEE GDDCTQDIFIANKTDIEKNIWMLQAKLGKAPGIDA >gi|308151727|gb|GL476295.1| GENE 34 33233 - 33952 586 239 aa, chain - ## HITS:1 COG:no KEGG:EF3234 NR:ns ## KEGG: EF3234 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 239 1 239 239 339 97.0 7e-92 MKKQLLPLFLLFIGALASCSAPSRSGEKAAQQLVDYFIYQEKPATFSQTFREPKVLAEHL QTSRQQFQKQFFNSLKEMNAEVTETEAQKLSAELLAQVKKKASYQLVATKELNGQATITF QIKGLDFVTAIEDTTTALLQQTQQATQALDMQHTLAVLKKEIQQINVSHEPVELPLTVKQ VEGQWYLPAAEQLRLNQFFLAFVTGKEDTDQLTEALDTILTQAEQKVVTADEKTAISGN >gi|308151727|gb|GL476295.1| GENE 35 34036 - 35556 1512 506 aa, chain - ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 506 1 507 513 416 41.0 1e-116 MEKLAIGVDVGTTQAKAVAFQANGTVVASSYVRYPLIQETEGMAEQDPETLFQAVVNCIR TVTQQVKNQPIGLISFASAMHGLIAMDAQGRPLTQVITWADTRASDYAEALKETPAAQLF YQLTGMPVHPMAPLYKIRWLQENQPAVAQSAAKFIGIKDYIFYRFFGEYWTDYSSASGMG LFNIHTRQWESSILAYLSIEEEQLPKVAPSTFIFPALAPSWQEMLGVEEETVLVLGGADG PLSNLGLGALGMGVATLTVGTSGALRYIVEEPFLHPQGETFCFALDEQHWVIGGASSNGA VALDWASQTIFAEERQQAIRNGTNLYDPIMAKIATVPAGANGLLFHPYLLGERAPLWNAE ANASFIGLRKNHHAGHLARAVVEGICFNLKTILEDLKQLGGPVQEIRATGGFADSPVFRQ IMADVLGETLSFTDSTEASALGAVLLGWQGLGQLPNLQAAAQQVLIHETVTPRADQLLVY QELYPVFQETQQVLAQSYQKLAEFRK >gi|308151727|gb|GL476295.1| GENE 36 35665 - 36357 231 230 aa, chain + ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 3 223 7 236 254 92 30.0 7e-19 MFFLNLFLIGACFGSFLCLVAERLPVGRSLWWPPSHCQGCHQPLQLYELIPVVSILLQRF RCRKCQQPVAKSYLLAELVMGSLTASCFSAGLTIDALILWWWLTSAFTLSLIDYWYLVVE PKILYPSFFVLCLLKVAGQHSFYLLTGLFCFCFFQAVLHYFPEAMGRGDLLLLGLWGCFL QVPQLLMLLFFASSYGLIYGYSCKFLGYPVEQTLPFVPFLSLGLLTISCL >gi|308151727|gb|GL476295.1| GENE 37 36406 - 40059 4609 1217 aa, chain - ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1202 1 1201 1201 1930 79.0 0 MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEEVIYFASYVVIEPGDTTLEKKQLLTEREYREKREQYGQAFKAAMGAEAVKQLLD NVDLDGEVAQLKEELKTASGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE MAIELFKPFVMRELVQREIATNIKNAKRKIERGEDEVWDILEEVIQEHPVLLNRAPTLHR LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWQNGYVHLHSRIGVQ TTLLGDKPFTDWQKERILITTVGKIIFNEIMPVEFPYLNEPTDYNLTVQTPDKYFVEAGT DIPTHIKEQELVLPFKKKNLGNIIAEVFKRFHITETSKMLDRMKDLGYKHSTYAGMTVGI ADIMVLHEKQAIIDAAHKQVETITKQFRRGLITDDERYERVIGVWNGAKDEIQQKLIESM EARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLEIEAIREGNEIIEPLD ERLLGRYTRKSVVHPETGAIIIGADQLITEDLAREIVDAGIEKVTIRSVFTCNTKHGVCK HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF EARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYTARMKVAEGDIIH RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIR VMDPGDTEILPGTLMDIAEFKDRNYDTLVAGGVPATSRPVLLGITKASLETNSFLSAASF QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNMEPKEVGVASENVYSIS DIEAQMAAEDAMKNINK >gi|308151727|gb|GL476295.1| GENE 38 40226 - 43840 849 1204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 725 1140 906 1387 1392 331 43 6e-90 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIDDFQG NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT EMGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV DPETGEIIVEKGTVLTHQIMETLGEYIDNGLNSVTYYPSEDAVVTEPMTIQVIQVLSPKD PERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGELL QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP LGELTYKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK VNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMARL QSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP WVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDKYMVTKFRRSNSGTSY NQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVG KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS RMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGE PFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV LDIEEAEIELRDMDDDDDDLITVDALTKFAEQQSAKQLEKEAESVVKEEAQDVVQEIETA EDRD >gi|308151727|gb|GL476295.1| GENE 39 44211 - 44552 353 113 aa, chain - ## HITS:1 COG:DR0417 KEGG:ns NR:ns ## COG: DR0417 COG2337 # Protein_GI_number: 15805444 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Deinococcus radiodurans # 7 105 5 103 117 77 36.0 8e-15 MNVEKKYIPKKGDIVWIDFDPAAGKEIQKRRPGLVVSRYEFNRKTMFAAICPITSTIKNI PTRYTLPDDIETQGQVVISQLKSLDFTERKLSQIEHLPLKDMAKIDQIIEYIF >gi|308151727|gb|GL476295.1| GENE 40 44552 - 44782 282 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307288305|ref|ZP_07568301.1| ## NR: gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX1302] # 1 76 44 119 119 150 98.0 3e-35 MLTTKSRRQGSSVVLTLPTDNGKKPKVDQEYIVMYSDDGTITLVPKIQDPFSEGPEGEYY EKDEWHDLAPEGRELF >gi|308151727|gb|GL476295.1| GENE 41 45188 - 45403 296 71 aa, chain - ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 76.0 1e-21 MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG MNVLDFLLGGG >gi|308151727|gb|GL476295.1| GENE 42 45542 - 46534 1041 330 aa, chain + ## HITS:1 COG:SPy1362_2 KEGG:ns NR:ns ## COG: SPy1362_2 COG0340 # Protein_GI_number: 15675294 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pyogenes M1 GAS # 81 321 2 235 240 198 44.0 1e-50 MSTKSQVLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNKGYRLE KSDVLSAEGIQLALWPQTPPLTITVPETSESTMTDAKRAILDQTPDNTLIVADMQEMPRG RFGRPFFATPGKGIYMSMVLQPNQNFEEIAQYTVIMAVAVARAMDALAGVQTEIKWVNDL YLNGKKVCGILSEAMSNVETGQISNVIIGMGINFSITETEFPEDIRQKVTSLFPDGEPTA TRNELVANIWNHFYQILDERSTKDFLEEYRQRSFVIGKDVAFTQNGQDFRGVATTINGNG ELIVQLPDGTAKTLSSGEISLDQIGEWRRG >gi|308151727|gb|GL476295.1| GENE 43 46798 - 47436 560 212 aa, chain - ## HITS:1 COG:L11456 KEGG:ns NR:ns ## COG: L11456 COG3397 # Protein_GI_number: 15673933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 211 1 206 220 149 40.0 3e-36 MKKMMLFIIAVGATMISVFALGDAQQSYAHGYVDSPVSRVKNAEANGFGWGPGQDSSQPE IITTPQGIEAPTKLLDTGQLNGRLPSAGLASYSKLDEQTATRWVKSNITTGENNFKWVMT AKHKTNRFRYYMTKPGWNPNAPLTMDEMELIGIVGQPIGQDLPPGQGFMVNDTETHRIKI PADRKGYHVIYAVWDINDTINSFYQAIDVNVQ >gi|308151727|gb|GL476295.1| GENE 44 48124 - 49740 1336 538 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 237 530 10 304 304 207 41.0 6e-53 MQTSNKKFPLYALTTLGFTFLTLLVAASPNWFQQMDEAIYHIKWQLNAPLLTAVNLLAKT ATIGPMLLFFLLLMVYLLRKKEKILAFWAVSNLLAVGFLGSVFKHVVGRARPNLGALADR SSASFPSGHSLLAMALVCTILIILAYLHVEKTKGIKIFLLTYLVLIVLGRLILRVHYPSD VIAGMLLSYSWINFSFQIVQRYLPAPEPEEAEVPTQRRRRHSRKRKSLFVVFSLTLLFLG TLSVSAYGVSMYRNLQKTANTMYKPRKSSTKSPDLAKGEPVSFLIMGIANDSKRKTDYRS NALMVVTVNNQLQKTTITSIPRDYYVEMAGTNGEYNKINAAHVFGGADMQIKTVENVLHI PINHYFSIDMDAMKDLGDAVGGVTVDNAFAFDAEGIHYPKGKQHLGGWEALQYARMRYED PEGDYGRQRRQREVLIELTNKLLSFNSLLKYQEILDVIGEHGETDLSFDQMMAMLKKYTP ALKTIETDQLKGYDYTGDGVTGIEGISYQLVEESERQRVENAIKEQMNLSTKDTEQSQ >gi|308151727|gb|GL476295.1| GENE 45 50012 - 50155 151 47 aa, chain + ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 81 97.0 1e-14 MHVFPKFRERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK >gi|308151727|gb|GL476295.1| GENE 46 50768 - 50872 121 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIAEALALMISFGSFIATLIFGILEAVKKDNKK >gi|308151727|gb|GL476295.1| GENE 47 51067 - 52059 1041 330 aa, chain - ## HITS:1 COG:no KEGG:EF3250 NR:ns ## KEGG: EF3250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 14 330 327 645 645 423 69.0 1e-117 METSKTPSYSVTYNDQDDLTVVYKEGTISADLTMRGAVDVIDNGAPMEYWEVLLKNTGEV PLTSIKINPTTDWMSGISTPTELFILGTGQNAKARPITKEQWEAGFDIPLDSSLPVGGQL TINLIGTKVTGQPGQVLKAAVEVTGNFGNLKASDTVRIKDLDQEIKEPTGEGFISVPTFD FGQVGVASATKQHGLKKAADYYGNGTRNPYVRISKTQPNWSLTAQLSQPKSATDSLPTAT RLLLGAAPVSSFSNYNQPTELKNAIGTTNAIHLTANNAATSIIANQQFTGSDVYQLDFTF DNIKLEVPANQGTAGQQYQAAVTWNLVTGP >gi|308151727|gb|GL476295.1| GENE 48 52087 - 54942 2196 951 aa, chain - ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 328 951 451 1089 1426 513 51.0 1e-143 MKQIKFKQLATFGLCCSLLGNSLTGVTAVAETVTIESSPTAESTKESPKERTETSEATTE TSREEATQETEKQEKGKEAETEAAQVGVEQEETETSEVIQPDSVLLPASGIGVQAGNLAS VHEQVASMGIPTRGRVTITVPDIRLGIGLNSLDKVTLNTADFDIVAKGRTVTTRGLAGGN FQSYLGTVIDFGTSKTNNSLDILIPSRTITAKYTAPYVFDGSVYYMNPINLTVPKYIKAI SIKDNQTYNTFYIRRGFTYGVYAGSVNPTITKKSEVNYELSSDVSYNVSGDTLTRIFYSR VDNVNPEGQNSFQVSLPKQDIVVNVENRKVTENFKDVNGTAIPAPTDFTQGKQTSITNND YTFTQEGTLPDTYTADGKTYKFKGWYKGKTKPETLETSKTPSYKVTYDDNDDLNVVYGET EAFEFPALTYQFGFVDESGQRVDASTIGLTYDNWYGELLTDNVADWQTITLEKGQVAPTK NNLKEITYPAQALERVAGRTSQYSAANLTFTLPKYYEKISVYNKTGTFDSAYPFPNIQVS SGSSIGSNAAKNFELKEAGSQSFVFNQPTAAAPVDIQVPAYLREVVYNPASTPTEAVYYT IDKPVYYYLTNRKVTENFVDASGAKITAPTGFKQGKQTVIDSDDFTYTQEGTLPYIYKIN NKPYVLKGWYKGKEKPEKLNQITKEKPNISYPVSYDDQDDVTVVYDELKLAGNTIQFGFV NEQGNYIPPTSKFNVSTDIGEVTNATYAKLQTVNSTINGNYLSLTIPAYNPTGGIGQGTE YYGSRNSIVTIPNYYKPPTLTPPSNYNGTVYPTATGVVDYHDAATYAYLPSRLNLTPVSS SQTNYRLPQAIWTDEETKTAFSSLYKMNATSTSDTTMGLAEIYATGTVNYYLENRRVTEN FVDDTGAKITPPTDFTQGKQPVIDSDNFTYTSAKALPASYTADGKSYVLQG >gi|308151727|gb|GL476295.1| GENE 49 54923 - 55291 320 122 aa, chain - ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 85.0 1e-43 MKKKRYLMIVCLLSSPSFFINVEASDGGSSSVGIEFYQNPTTPAPKDAPPKTDAPATDPK GPAGPPQGDQRSGGSTQTTTTGSKLPSTGSKSQANLSILGLALIGLVGIVHRKKERHETD KI >gi|308151727|gb|GL476295.1| GENE 50 55678 - 56625 959 315 aa, chain - ## HITS:1 COG:L112353 KEGG:ns NR:ns ## COG: L112353 COG1575 # Protein_GI_number: 15673645 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 313 1 313 319 303 54.0 2e-82 MSLNVFLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWCNTLVFFIGMVVFDMATTAINN YMDFKKAKSDVYKYEENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFLVLGG ICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLTVYLNVVTNPPFYLTVDFASGAF HLDGNLWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPAGIVLFQ VLALAGYLVILFGFISGIYQWPVLITFATLPVIWKNIQTFKQELPQPKSFRHSIKNLLVF NGTYALGLLISALLG >gi|308151727|gb|GL476295.1| GENE 51 56639 - 57706 1203 355 aa, chain - ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 3 340 2 348 360 376 56.0 1e-104 MKKKLLLMVSVLAVLFVAAACSSKPEAKINTEPYSDRQTMLGTYVQIRIYDDGKEDVLPK AFARVKELGDKITVNQPGSEIDEINQEAGVKPVKVSDDLYPLLKKAYEYSKDSRGGFDMA IGPITSMWHIGFDDARKPSQAEIDQALKLVDYTKVKFNDKEQTVYLEEKGMQLDLGAIAK GFITDEVVKVLKDNGVTTAIVDLGGNVYVLGHSPRGKDMDWTVGIQDPNKARNTVLGQVK ESNKTLVTSGIYERYLKVDGKTYHHLFDRETGYPFDNDIAGVTIITDKSIDGDGLSTAVF SMGVKKGLEYVESLKGTDAIFVTKDDKVYISKDIEGNFEIGKDSGYTMGNRADLK >gi|308151727|gb|GL476295.1| GENE 52 57962 - 58891 1260 309 aa, chain - ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 307 1 296 299 223 50.0 5e-58 MKVNKFVKGFAAIALFSLVLAGCGADKKDNTTNSSSVASSETKKSTESSAPAKKVAGGDL KDGTYKLEEKNEKNGYRAVFEMTVKDGKITESKYDNINADGKSKTEDTKYEESMKAKSGV GPKEYIKQLNDSFVKAQSASGVEVVTGATHSSESFQNYAQQLIQAAQAGNTDTIEIDNGA TLKDGTYSLKEKNDSNGYHTTFSMTVKDGKVTESNYDNVNADGKSKKDDTEYESKMKDVT GVGPKEYIETLNKEFVKAMGEEEGSPAGVEVVTGATHSTHSFINYAQQLVNAAEKGDTTE IVVDNIVTK >gi|308151727|gb|GL476295.1| GENE 53 59169 - 61115 2171 648 aa, chain + ## HITS:1 COG:L41335 KEGG:ns NR:ns ## COG: L41335 COG1252 # Protein_GI_number: 15672811 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Lactococcus lactis # 1 648 1 666 667 717 57.0 0 MTKQNIVVVGAGYAGVSATKFLAKKFKKDTDVTITLIDRHSYHTMMTELHEVAGGRVEPE AIQYDLQRLFSRKKNVKLVTDTVTGIDKENKVVKTLAGSYPFDQLILGMGGEPNDFGTPG VKENGFTLWSFDDAVKIRHHIEATVAKAAIEPDAEVRKAMLTFVVCGSGFTGIEMVGELI DWKDRLAKDAKIDPDEITLMVVEAMPTILNMLSRNDAAKAERYLEKKNVQLLLNSPIVEV AADHIKLKDGSEVPTHTLIWTAGVKATSDAADFGLEAARGSRLVANEYMQAKGYEDKNIY IIGDLVYYEETPNTPTPQIVQAAEQTGHTAAANIVADIKGGEKHAFKGNYQGFMVSIGAK WGVANLFDKIHLSGFLAIIMKHIVNLKYFFDIRSGYYMFQYIMHEIFHIKDDRSVARGHT SRYGNVLWSVPLRVFYGMVWLVESMKKIVGNGDYLKPSTWFGDGSWFTDKVVFPFPWLQE QVTTGASQATETATTAASGAADAAASGGADAATQAAHFGLSYAYGETPMQVFDHMPKWFE SVMKFMMPNQEVALFMQKFMTIVEVCIALALIAGLFTWLSSAATIGLTIAFCLSGMFYWV NIWFIFVAFALMNGSGRAVGLDRWVIPWIQRKLGKAWYGTPKARYGGK >gi|308151727|gb|GL476295.1| GENE 54 61644 - 62066 530 140 aa, chain + ## HITS:1 COG:L178600 KEGG:ns NR:ns ## COG: L178600 COG5341 # Protein_GI_number: 15673322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 140 10 133 135 102 45.0 2e-22 MTIKEFIKKSRLKTWDVIIIAILVLGSFLPLVVFAMQNRGQEAATYQAVLKVDNKVIKVF DLKKDGPHYTYKYEAKDGDYNLIEVDGDRIRVKEANCADLVDVRRGWISKPGETPIACLP HNLFITVEASDGSEDGSLIY >gi|308151727|gb|GL476295.1| GENE 55 62078 - 62635 616 185 aa, chain + ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 169 1 169 180 205 63.0 3e-53 MSKLHKNIYIAMLVAQGVIIGLIENMIPYPFAFAPGAKLGLANLITIIAIFTMRKRDSFF LVCLRLILTTLLGGTLSTFFYSASGALLSYFGMLLVKQLGPKRVSIIEISAVGGFLHNVG QLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGIAANYLLQHVQTLRKFQLNYEQTTKHK WSQFF >gi|308151727|gb|GL476295.1| GENE 56 62673 - 63659 918 328 aa, chain + ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 327 1 325 326 332 48.0 4e-91 MNIHPMWNTYPTLSKELTTTLRLMEQAVQIDNQEIQAAVHDMIHSGGKLLRPAYQLLFSY FGEQRDPKKATALAASIELLHTATLVHDDIVDEADTRRGLPTLRSRFGNSTAVYTGDYLF VCCFKLLSDYSSSLKSIQLNSRSMEKVLTGELGQMDNRYNFEVTIDQYLKNISGKTAELF ALSCFVGAYESGTSQRFAKRCGEIGENIGLAFQIIDDILDYTQTADAIGKPVLEDVRQGV YSLPLIYALEANREILLPLLMKKEALTDEETQEIYRLVHELGGVEKTQELATHYTEKALK EISKLPETKAQAKEQLYEITQTILTREN >gi|308151727|gb|GL476295.1| GENE 57 63726 - 63974 298 82 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229547905|ref|ZP_04436630.1| acetyltransferase including N-acetylase of ribosomal protein family protein [Enterococcus faecalis ATCC 29200] # 1 74 1 103 204 119 60 4e-47 MIEFKNILDSLVERGATMTFLQWYSHTTLSEMWAFYEKTITHHPYYLAICLKDKENSCPI GYVKAEMNDSHDFGTSKGVSSA >gi|308151727|gb|GL476295.1| GENE 58 64661 - 65473 550 270 aa, chain + ## HITS:1 COG:RP259 KEGG:ns NR:ns ## COG: RP259 COG1680 # Protein_GI_number: 15604129 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Rickettsia prowazekii # 18 198 143 319 414 85 29.0 9e-17 MEMPVVAFFPDLLIPKAITVKHLLTMSSGLPDYPTELFLNSLKKIKEQRPELNEKLQEFY AEFATAEQISFNKLKTIIATKPMDFQVGTRVSYSNTNYYLLGLIIEKVSGLSFEKFVTQK ILSPLSMVKTSFATQNSIARSYRNIDNELHEFPNTYQLLSADGCMVSTINDLSKWLQAVL KGEILSPESWDQVFNLYLKEYNCGWMKLGDWFYHDGQYLGFYCEIFLHRKAGLGKVMLYN REATSELDQYSMDERSNWRNLIRDWSFSQN >gi|308151727|gb|GL476295.1| GENE 59 66388 - 67179 930 263 aa, chain - ## HITS:1 COG:slr2026 KEGG:ns NR:ns ## COG: slr2026 COG0294 # Protein_GI_number: 16329867 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Synechocystis # 1 259 21 287 289 198 41.0 1e-50 MIDLKKNYQIMGIVNTTPDSFSDGGSYTTVDVAYQHALHLLEAGADILDIGGQSTRPGYE EVSPQVEADRVLPLIKKIRETSLAPISVDTYYPEVAEAAIQAGATMINDIKGLDTPGMAE VLAQYPEVQVVIMHSRKRQSLSLKEELHQFYTEKIEQCQKYGLSLEKICFDPGIGFHKTV AENLQLLKDPNAFRYQDYPLLYGVSRKRTIGALTNEPEPANRDFGSAAASLYAAQQGVEI LRVHNVQGLKQTFDVWRALSEKE >gi|308151727|gb|GL476295.1| GENE 60 67172 - 67765 212 197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 186 6 196 207 86 29 5e-16 MEIIVGTNNQGKLKEMQSGLKDPAIQLVSYRKYTTSQEQPAETGTTYAENAYLKARFFQQ LIGRPVLGDDGGLTLTAFPDLLGIHTSRFFHSANPEEQNRELLHLFEGQQSTRELTLSAT LVYVLDDDKLLQTEATLTGELVEPRGTGGYGFDPIIYLPDRGKTLAELSTSERMKISPRM RALRKMIQQIKEQCDND >gi|308151727|gb|GL476295.1| GENE 61 67769 - 68329 697 186 aa, chain - ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 1 174 1 174 190 203 60.0 1e-52 MEQEKQAQIEQAVTTILEAVGEDTQRAGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLFDS LNEGEMVLVKDIAFYSMCEHHLLPFYGKVHVAYLPEGGKVLGLSKLPRLVEHCAKRPTVQ EDLTVTIARKLQENIPVKGIAVAIEAEHMCMTMRGVKTPQSSTKTFQFTGLFKEQEWKNQ FLMEIR >gi|308151727|gb|GL476295.1| GENE 62 68332 - 68817 540 161 aa, chain - ## HITS:1 COG:SMc00465 KEGG:ns NR:ns ## COG: SMc00465 COG0801 # Protein_GI_number: 15965562 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Sinorhizobium meliloti # 5 148 12 155 174 122 42.0 3e-28 MIGYVALGSNVGDPYANLVKARNYLNEDTQIQVVASSKLYETDPYGYTDQDDFLNAVLKI DTSYTAEELLAVTQGIEQAMKRKKLIHWGPRIIDIDILLLGGQSVALPHLQVPHQELTKR SFVLIPLSDVYAEEQLLGAPIATWIQRSGNQEEVRVSEKEW >gi|308151727|gb|GL476295.1| GENE 63 68818 - 69180 465 120 aa, chain - ## HITS:1 COG:lin0257 KEGG:ns NR:ns ## COG: lin0257 COG1539 # Protein_GI_number: 16799334 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Listeria innocua # 1 119 1 118 124 85 39.0 2e-17 MDKIRINNLKFFTKNGVLAEEKRLGQQVEIDLEMQLSLAEAGRTDDVTQTVNYAEVNELI AQRVNNHSYDLIEGLASAILDDISADYQEQLNKIIIKIRKYSVPMPGLFDNIEIEMEREV >gi|308151727|gb|GL476295.1| GENE 64 69358 - 70131 542 257 aa, chain + ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 64 1 64 107 65 40.0 1e-10 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE LIQGSPYFKKPQVVGKIYNLKKGILFCIIWTCFSLLLTGFGYQPFWLFSAIIFIGLLLVF PIIFSDYWIINQQDIMVHQFSRNPILKIIECIKNSSTQIKIPYSEIESIEIIYTKKIRAS AFDSSPDYFYLLVTYNNQTTKLYLDIYAKRFLPQFIAFLSRQRITIIDKSEIIELLVSDT SLYQHFNEKNVATDNRK >gi|308151727|gb|GL476295.1| GENE 65 70246 - 71595 466 449 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 443 1 442 458 184 29 2e-45 MKTYDYIVIGGGSGGIASANRAGMHGANVLLIEGNEIGGTCVNVGCVPKKVMWQASSMME MMERDTASYGFDVEIKNFSFKQLVENREKYIDFLHGAYNRGLDSNNIERIHGYATFTGEQ TIEVNGTEYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAGYIAAE LAGTLHGLGAETHWAFRHERPLRSFDDMLSEKVVERYQEMGMQIHPNATPAKIEKTAQNE YVITFENGESITTDAVIFGTGRQPNTDQLGLENTKVALDEKGYVKVDKFQNTTQNGIYAV GDVIGKIDLTPVAIAAGRRLSERLFNGQTDLYLDYNLVPTVVFTHPPVATIGLTEKAALE EYGEDQVKIYRSSFTPMYFALGEYRQKCDMKLICVGKEEKIVGLHGIGIGVDEMLQGFAV AIKMGATKADFDNTVAIHPTGSEEFVTMR >gi|308151727|gb|GL476295.1| GENE 66 71682 - 72080 551 132 aa, chain - ## HITS:1 COG:no KEGG:EF3271 NR:ns ## KEGG: EF3271 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 258 96.0 4e-68 MAKLFAYQIGQNPRIQTDLLVDPQLFEDEHGCAGGVDFGLADCVQTGMFTDIEVIKRYLH EATYVFINGDFDRLSYLEIGIALSLGKTLYVITMNPNVTKEDLGISFDNATIEFLSPSAF TERIHETEAAEN >gi|308151727|gb|GL476295.1| GENE 67 72103 - 73242 988 379 aa, chain - ## HITS:1 COG:MT2073_2 KEGG:ns NR:ns ## COG: MT2073_2 COG2856 # Protein_GI_number: 15841500 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 139 323 65 237 279 102 30.0 2e-21 MNERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQ FPRSFFSADTFELYSGATFFRSRSAATKKVRDMQKERLKYVQEVYKVLATYVNFPKVCLP ELIEKSIYEITEEEIVKKAEELRKIWGLDLISPVPNLIQLAEQNGVIISEANMSNPTLDA VSRWMIGRPFIMLTDNHESAVRRRFNVAHELGHILLHNGVESIHEYSQTELKNIIEYQAN LFAAHFLLPSAAFSDSLLSISLEYYIDLKKYWKVSLQSMIQKTYTLALINDDQRLYLNKR IAKNKWKTKEPYDEQLTIEQPEVFQKVYHMILEHQVIPASQLNQAFKLPKEEIEKILGTA IQTEQDKTEIVLELLRSNK >gi|308151727|gb|GL476295.1| GENE 68 73220 - 73885 704 221 aa, chain - ## HITS:1 COG:no KEGG:EF3273 NR:ns ## KEGG: EF3273 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 65 221 1 157 157 318 99.0 8e-86 MSILKEHLKRNCDARMVGVLSLSIREAYRYLMELTERESIFQRAEMKKVWGHVRHGLVDV GLKQVLTSSAIPHEIADKASSRYVNGHTYLMIETKGAILTPAKVLSEASVPKKALFRNRG SLLNKQYNLFDKPEDLNEYYDANQPPFLLLTYGGSNHQLRFVRLGLPDIGVGRWIDQIDI TQAPVLLKNPEEVRKDLHLTFTSTADELIRRGLENEREVDF >gi|308151727|gb|GL476295.1| GENE 69 74148 - 75701 2040 517 aa, chain - ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 731 74.0 0 MYKIGIDVGGTNTDAVILDHQLNLIHSVKVPTTDDIQTGIASALNKVLAESAVDPTKVTH AMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPKDLVATLSETYALAHGGYE YDGQPLTALDEEELRGILASWRGEVEAIAVIGVFSSLKNDQELFVQALAKEVLGADVPVS CSSMIGSVGLIERENATILNAALHKVIKVTSEGFEQALEQEKIHHAQVYLCQNDGTLMSL TYAKQFPILTIACGPTNSIRGASYLAGLKDAVVLDVGGTTSDIGVLVDGFPRESSLAVDV GGVRTNFRMPDIVSIGVGGGSLVREQPDGSVTVGPDSVGYRITQEALVFGGTQLTTTDIA VRLGHAQVGDPSKVAHLDQAFAEKVYQKIGELVSEAIDRMKTSSADVTVVLVGGGSIIIP EELTGVKALIRNENGAVANAIGASIAQISGQYEQIYVYSKIQRDAALTDAQEKAVQQAEL AGAVPGTIELVEVEETPLAYHPENATRLRVKVVGNMY >gi|308151727|gb|GL476295.1| GENE 70 75702 - 76796 1378 364 aa, chain - ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 364 1 363 366 565 76.0 1e-161 MRYLDAEAIENIATGAAFLGTGGGGDPYIGKMMALSAIEENGPVKLVSPEEIAAEDFFLP AAMMGAPSVAIEKFPKGDEFVRVFEKLGKYLDQETIAGTFPMEAGGVNSMIPIVVAAKLG IPLVDCDGMGRAFPELPMVTFHLNGMSATPMAITDEKGNIGIMETIDNTWTERLARVQTV EMGASALVSIYPATGKQLQDYGIHNIVTLSEEIGKVIRGTYADEQEKRQALVEVTDGFEL FQGKILDVEREVKGGFNLGRVKLSGLNSDAGSEAVVHFQNENLIAEKDGQVIAMTPDLIC MVDLETLTPVTTESLKYGKRVQVMGLKANAAWRTKKGIETVGPRYFGYEMDYQPLENLVA KEDK >gi|308151727|gb|GL476295.1| GENE 71 76816 - 78084 1510 422 aa, chain - ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 2 420 4 422 427 507 68.0 1e-143 MKLKNEQQQSWLSLAFVWAGAMISVPGLIIGGTLVAGMPLWEALLTGFIGYGIIVILMIL QGIQSSDLQEPSVKVASQVFGIQGSQKIISIILAIACLGWFGLQANVSGGAFTNFLKIYG IDLPVSLSSLIWGIIMLISALYGIKILKILNYFAVPVLVLVCLYGLVASLRNNGWGAVSQ YTPQTAGSFMSGLSMTVGSFALGAVIAGDYSQYVSSRKDVVKAATLGILPTGLLMIGVGA VLTIASNTADITEVFMNLGFPVLGIIALILATWTTNAVNAFSGGLALINVFDIPKEKEKV AVGAAGAIGTLLAVVGILNYFTPIMSVLSAMVPPVAGVMIAAYWLINKGDRTKWQPTHGV NKLGVFSWLIGAAVGGIPVIMSFFPNAPQLPNQPLIGIVLSFVIYYFGAKRQQTNTESLE ME Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:30:53 2011 Seq name: gi|308151726|gb|GL476296.1| Enterococcus faecalis TX4000 genomic scaffold Scfld179, whole genome shotgun sequence Length of sequence - 100041 bp Number of predicted genes - 105, with homology - 96 Number of transcription units - 38, operones - 26 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 24 - 113 78 ## 2 1 Op 2 . - CDS 106 - 474 629 ## PROTEIN SUPPORTED gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 3 1 Op 3 . - CDS 471 - 815 235 ## gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 4 1 Op 4 . - CDS 829 - 1011 408 ## EF2010 hypothetical protein 5 1 Op 5 . - CDS 1040 - 1927 1084 ## EF2011 hypothetical protein 6 1 Op 6 . - CDS 1941 - 2564 719 ## EF2012 hypothetical protein - Prom 2633 - 2692 3.6 7 2 Op 1 . - CDS 2694 - 2777 142 ## 8 2 Op 2 . - CDS 2782 - 3126 288 ## EF2013 hypothetical protein 9 2 Op 3 . - CDS 3167 - 3376 146 ## gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 10 2 Op 4 . - CDS 3385 - 5142 1135 ## EF2015 minor head protein, putative 11 2 Op 5 . - CDS 5117 - 6604 1093 ## EF2016 portal protein 12 2 Op 6 2/0.000 - CDS 6616 - 7884 570 ## COG1783 Phage terminase large subunit 13 2 Op 7 . - CDS 7877 - 8680 504 ## COG5484 Uncharacterized conserved protein 14 2 Op 8 . - CDS 8727 - 9449 519 ## gi|281416360|ref|YP_003347494.1| hypothetical protein - Prom 9474 - 9533 4.4 15 3 Tu 1 . - CDS 9553 - 9630 57 ## - Prom 9660 - 9719 6.6 - Term 10120 - 10157 -0.4 16 4 Tu 1 . - CDS 10166 - 10780 450 ## EF0126 hypothetical protein - Prom 10821 - 10880 8.7 - TRNA 11014 - 11086 79.6 # Asn GTT 0 0 - Term 11268 - 11304 -1.0 17 5 Tu 1 . - CDS 11311 - 11727 278 ## EF2024 ArpU family transcriptional regulator - Prom 11825 - 11884 5.3 - Term 12311 - 12349 0.4 18 6 Op 1 . - CDS 12458 - 12574 83 ## 19 6 Op 2 . - CDS 12634 - 12822 145 ## EF2128 hypothetical protein 20 6 Op 3 . - CDS 12839 - 13057 268 ## EF2128 hypothetical protein 21 6 Op 4 . - CDS 13075 - 13374 407 ## SH1788 hypothetical protein 22 6 Op 5 . - CDS 13375 - 13677 357 ## gi|229545388|ref|ZP_04434113.1| hypothetical protein HMPREF0349_0605 23 6 Op 6 . - CDS 13681 - 14643 617 ## EF2130 DnaD domain-containing protein 24 6 Op 7 3/0.000 - CDS 14657 - 15547 1112 ## COG3723 Recombinational DNA repair protein (RecE pathway) 25 6 Op 8 . - CDS 15550 - 16491 801 ## COG5377 Phage-related protein, predicted endonuclease 26 6 Op 9 . - CDS 16488 - 16589 172 ## 27 6 Op 10 . - CDS 16589 - 16816 249 ## EF2843 hypothetical protein 28 6 Op 11 . - CDS 16816 - 17139 384 ## gi|229545382|ref|ZP_04434107.1| hypothetical protein HMPREF0349_0599 29 6 Op 12 . - CDS 17183 - 17368 301 ## gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 30 6 Op 13 . - CDS 17359 - 17553 190 ## gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 - Prom 17765 - 17824 8.0 + Prom 17511 - 17570 7.0 31 7 Tu 1 . + CDS 17606 - 17788 183 ## EF2036 hypothetical protein + Term 17789 - 17819 1.3 - Term 17740 - 17783 -0.3 32 8 Op 1 . - CDS 17828 - 18550 670 ## COG3646 Uncharacterized phage-encoded protein 33 8 Op 2 . - CDS 18589 - 18900 205 ## EF2038 hypothetical protein 34 8 Op 3 . - CDS 18912 - 19103 222 ## EF2039 hypothetical protein - Prom 19162 - 19221 7.8 + Prom 19312 - 19371 9.2 35 9 Op 1 . + CDS 19394 - 19738 350 ## COG1396 Predicted transcriptional regulators 36 9 Op 2 . + CDS 19752 - 20390 385 ## EF2041 hypothetical protein + Prom 20429 - 20488 6.2 37 10 Op 1 . + CDS 20508 - 21272 501 ## EF2795 LysM domain-containing protein 38 10 Op 2 . + CDS 21287 - 21616 398 ## LCABL_12950 prophage Lp2 protein 7 + Term 21637 - 21674 1.1 39 11 Tu 1 . + CDS 21691 - 22839 419 ## COG0582 Integrase 40 12 Op 1 . - CDS 22867 - 23310 275 ## MPTP_1391 late competence protein ComGD, access of DNA to ComEA 41 12 Op 2 6/0.000 - CDS 23307 - 23582 406 ## COG4537 Competence protein ComGC 42 12 Op 3 24/0.000 - CDS 23582 - 24496 741 ## COG1459 Type II secretory pathway, component PulF 43 12 Op 4 . - CDS 24585 - 25553 812 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 25696 - 25755 6.6 - Term 25600 - 25638 6.2 44 13 Tu 1 . - CDS 25794 - 27122 1393 ## COG0531 Amino acid transporters - Prom 27227 - 27286 7.5 - Term 27354 - 27407 8.0 45 14 Tu 1 . - CDS 27412 - 28485 1263 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 28516 - 28575 6.4 - Term 28554 - 28608 11.6 46 15 Op 1 36/0.000 - CDS 28609 - 30438 1660 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 47 15 Op 2 1/0.000 - CDS 30428 - 31177 1046 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 31201 - 31260 8.2 - Term 31232 - 31285 12.1 48 16 Op 1 3/0.000 - CDS 31295 - 31996 826 ## COG2188 Transcriptional regulators - Prom 32043 - 32102 13.3 - Term 32073 - 32119 9.5 49 16 Op 2 . - CDS 32127 - 34550 2636 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 34571 - 34630 4.8 - Term 34748 - 34801 8.4 50 17 Op 1 . - CDS 34864 - 36075 1646 ## COG1252 NADH dehydrogenase, FAD-containing subunit 51 17 Op 2 . - CDS 36104 - 37009 802 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 52 18 Tu 1 . + CDS 37131 - 38111 1087 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 38146 - 38203 9.6 - Term 38140 - 38185 6.5 53 19 Op 1 14/0.000 - CDS 38191 - 39954 234 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 54 19 Op 2 5/0.000 - CDS 39954 - 41687 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 55 19 Op 3 31/0.000 - CDS 41692 - 42705 1057 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 56 19 Op 4 . - CDS 42702 - 44120 1540 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 57 19 Op 5 . - CDS 44122 - 44184 83 ## - Prom 44212 - 44271 5.1 - Term 44205 - 44239 0.4 58 20 Tu 1 . - CDS 44280 - 44378 65 ## - Prom 44411 - 44470 3.0 - Term 45010 - 45043 4.7 59 21 Op 1 . - CDS 45050 - 45913 855 ## COG3708 Uncharacterized protein conserved in bacteria - Prom 45933 - 45992 3.3 60 21 Op 2 . - CDS 45998 - 48079 1930 ## COG0550 Topoisomerase IA - Prom 48107 - 48166 4.8 - Term 48152 - 48202 5.6 61 22 Op 1 . - CDS 48210 - 48575 300 ## COG4699 Uncharacterized protein conserved in bacteria - Prom 48599 - 48658 4.7 62 22 Op 2 . - CDS 48673 - 49242 749 ## COG1309 Transcriptional regulator - Prom 49276 - 49335 6.4 + Prom 49281 - 49340 8.3 63 23 Op 1 3/0.000 + CDS 49375 - 49890 593 ## COG1881 Phospholipid-binding protein 64 23 Op 2 . + CDS 49907 - 51145 1166 ## COG0477 Permeases of the major facilitator superfamily - Term 51229 - 51271 -0.1 65 24 Tu 1 . - CDS 51325 - 52449 1380 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 52515 - 52574 5.9 - Term 52612 - 52668 11.3 66 25 Op 1 . - CDS 52675 - 53019 449 ## EF2071 hypothetical protein 67 25 Op 2 2/0.000 - CDS 53087 - 54232 1170 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 54258 - 54317 3.9 - Term 54321 - 54372 9.4 68 25 Op 3 . - CDS 54389 - 55363 1324 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 55537 - 55596 7.0 + Prom 55490 - 55549 7.6 69 26 Op 1 42/0.000 + CDS 55576 - 56325 189 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 70 26 Op 2 12/0.000 + CDS 56322 - 57191 1002 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 71 26 Op 3 . + CDS 57178 - 58104 1286 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 58113 - 58170 17.0 - Term 58100 - 58157 17.0 72 27 Op 1 . - CDS 58159 - 59697 1629 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 73 27 Op 2 . - CDS 59845 - 59952 124 ## - Prom 59972 - 60031 3.3 - Term 60015 - 60057 4.0 74 28 Op 1 . - CDS 60067 - 61260 1683 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 75 28 Op 2 22/0.000 - CDS 61275 - 62108 1104 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 76 28 Op 3 32/0.000 - CDS 62128 - 62808 938 ## COG2011 ABC-type metal ion transport system, permease component 77 28 Op 4 . - CDS 62816 - 63895 1036 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 63925 - 63984 3.2 + Prom 63864 - 63923 6.6 78 29 Tu 1 . + CDS 64000 - 64137 74 ## + Term 64251 - 64304 -0.8 + TRNA 65079 - 65151 79.5 # Thr GGT 0 0 + Prom 65080 - 65139 78.1 79 30 Op 1 . + CDS 65309 - 66799 848 ## EF2146 hypothetical protein + Prom 66922 - 66981 6.2 80 30 Op 2 . + CDS 67012 - 67191 166 ## EF2147 hypothetical protein + Term 67246 - 67286 8.1 - Term 67234 - 67274 8.1 81 31 Op 1 . - CDS 67279 - 68244 1090 ## EF2148 hypothetical protein - Term 68335 - 68363 -0.9 82 31 Op 2 . - CDS 68420 - 68710 483 ## EF2149 hypothetical protein 83 31 Op 3 . - CDS 68759 - 70039 1450 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 70112 - 70171 7.7 - Term 70206 - 70259 15.1 84 32 Tu 1 . - CDS 70308 - 72116 2170 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Term 72455 - 72506 6.1 85 33 Op 1 34/0.000 - CDS 72559 - 73377 948 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 86 33 Op 2 3/0.000 - CDS 73389 - 75095 278 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 75128 - 75187 1.9 87 33 Op 3 . - CDS 75196 - 75747 480 ## COG4720 Predicted membrane protein - Prom 75791 - 75850 7.8 - Term 75911 - 75966 13.1 88 34 Op 1 6/0.000 - CDS 75977 - 77332 1765 ## COG1109 Phosphomannomutase 89 34 Op 2 7/0.000 - CDS 77325 - 78488 1416 ## COG4856 Uncharacterized protein conserved in bacteria 90 34 Op 3 1/0.000 - CDS 78485 - 79369 901 ## COG1624 Uncharacterized conserved protein - Prom 79398 - 79457 6.4 - Term 79510 - 79549 7.1 91 34 Op 4 . - CDS 79566 - 83255 4027 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - Prom 83316 - 83375 7.8 - Term 83472 - 83523 14.5 92 35 Op 1 5/0.000 - CDS 83555 - 84895 1496 ## COG0174 Glutamine synthetase 93 35 Op 2 . - CDS 84938 - 85321 439 ## COG0789 Predicted transcriptional regulators - Prom 85343 - 85402 7.6 - Term 85462 - 85510 8.7 94 36 Op 1 2/0.000 - CDS 85524 - 86765 580 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 95 36 Op 2 . - CDS 86769 - 87698 830 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 96 36 Op 3 . - CDS 87699 - 88445 656 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 88491 - 88550 4.4 - Term 88499 - 88536 3.3 97 37 Op 1 . - CDS 88554 - 90365 967 ## EF2164 hypothetical protein 98 37 Op 2 . - CDS 90362 - 91327 956 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 91351 - 91410 8.1 99 38 Op 1 . - CDS 91429 - 92850 846 ## EF2166 hypothetical protein 100 38 Op 2 . - CDS 92921 - 93838 514 ## Avi_3137 hypothetical protein 101 38 Op 3 . - CDS 93861 - 94685 544 ## COG3475 LPS biosynthesis protein 102 38 Op 4 . - CDS 94688 - 96082 514 ## EF2169 hypothetical protein 103 38 Op 5 12/0.000 - CDS 96098 - 97078 900 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 104 38 Op 6 . - CDS 97080 - 98138 1057 ## COG0451 Nucleoside-diphosphate-sugar epimerases 105 38 Op 7 . - CDS 98152 - 98856 209 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 - Prom 99043 - 99102 6.3 Predicted protein(s) >gi|308151726|gb|GL476296.1| GENE 1 24 - 113 78 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKSDLRMKSNADKVIANLKKMTPIAEKV >gi|308151726|gb|GL476296.1| GENE 2 106 - 474 629 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 [Enterococcus faecalis TX1332] # 1 122 1 122 122 246 99 3e-64 MNEAEILAATYFDTCVIERMSDIENTESGITEQVYFPIHVGKLPCAFSQGSMGNLPVIEN KEAFNISYEEQKLFLEPNIKVKKGDRITITQGTGQKHVLFSKKPFYYPSHIEVVLSGSSI DE >gi|308151726|gb|GL476296.1| GENE 3 471 - 815 235 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545407|ref|ZP_04434132.1| ## NR: gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02457 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9497_00013 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9508_00392 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_01915 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9511_03130 [Enterococcus faecalis TX0630] hypothetical protein EF62_2371 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 114 1 114 114 193 100.0 4e-48 MVDEKKEEIVEKIQLMLPNASEDRILSVLNLVIFEINSYNTCKIDIAWDEFEQLIIEVIY KALKNEIDKSVASVKRGDTSISYVVESKDIQSLMKNYSSAIKRILGCDSGVFFY >gi|308151726|gb|GL476296.1| GENE 4 829 - 1011 408 60 aa, chain - ## HITS:1 COG:no KEGG:EF2010 NR:ns ## KEGG: EF2010 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 91 98.0 9e-18 MATAKKEVTYRVLDKKNFVGFMHPKTKKFITANENNEFVVSEDDKEAIEILERAADTFKV >gi|308151726|gb|GL476296.1| GENE 5 1040 - 1927 1084 295 aa, chain - ## HITS:1 COG:no KEGG:EF2011 NR:ns ## KEGG: EF2011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 295 1 295 295 545 99.0 1e-154 MKKSSLNNLEYLDISQEVNALQVPNTPFLSYLLGAGKVEAAKSTEIKWREYGMNNDDSSA QLEGGEYADAESDRTWFNNYTEIFRKSTSVSGTLDAINVDGVGNELNSQVALRATEMKID LNRKLIVGVKADESGSKGRQMNGILNLISSTNKVETAAAGAVTRKDIDALFKTMLQKGYM GEKLCLVAPDMQELMTDQLDEKSTKIVQFGDKLTFGLQLGNIVSNYGSGIALIEPNLPNG TIAAIDTNYVKLRPLREWRAEELAKTTDSRRIGLVGEYSIEYKASNSGAILNLKA >gi|308151726|gb|GL476296.1| GENE 6 1941 - 2564 719 207 aa, chain - ## HITS:1 COG:no KEGG:EF2012 NR:ns ## KEGG: EF2012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 207 1 207 207 298 96.0 1e-79 MKPNLLPMDLQMFAEGEGATDFTFDDFKAFVESNEEAQKFVQSQSQSAADKQLEAWKQNN LEKIKETTIKEYEESKKNKTPEQIKLEELQAEFEAEKALRVTSDNKAFVAEKIAGLDWDG DLKDSISQFMLNNLVSSDTEFTKKAVEGFTELLEAINDKHAEAIKNVEMTKAFGNKSQQT NMVTGNQTKSFENPEAALGQKLQAFID >gi|308151726|gb|GL476296.1| GENE 7 2694 - 2777 142 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDPYDYLDADYEEHLLREEKQLKSDES >gi|308151726|gb|GL476296.1| GENE 8 2782 - 3126 288 114 aa, chain - ## HITS:1 COG:no KEGG:EF2013 NR:ns ## KEGG: EF2013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 9 114 1 106 106 196 94.0 3e-49 MLKFGGEVMKGLFEAVLNLEVTNGTEKAYKKVFEQENERYLTKHTLRDGNGNIVKDGLES VWSGNYCHVDILYSIPGRKSKLTISIVSRTLQNVKDAVTDYQMLGAELVHKNWK >gi|308151726|gb|GL476296.1| GENE 9 3167 - 3376 146 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545402|ref|ZP_04434127.1| ## NR: gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein [Enterococcus sp. 7L76] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0312] # 1 69 5 73 73 111 100.0 1e-23 MQHLEFSFGSLNGDYSEQTLENFEYMFNRLEEDNLGYVHFDNVSEFYFNGITNEDKRVLK ETIIANSKK >gi|308151726|gb|GL476296.1| GENE 10 3385 - 5142 1135 585 aa, chain - ## HITS:1 COG:no KEGG:EF2015 NR:ns ## KEGG: EF2015 # Name: not_defined # Def: minor head protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 634 645 93.0 0 MTKKKTTASERYWEKRRGLEDKARLKLEKKTLNELESVFERALVKIQRQLLSQADLHDIT QSERLEDFSKRDQEKYRKYIEKNYEKLMESDEAYKQFIDEYFPSFDYAKVNRLLQLRADI FSTLAGEAISSDVNGKFNNDLENITKRIYNSNSNTLMQLLGGSAPGLSKKELENILNYPW SGKTFSSRLWGNISSLEQRLSNSIINSLASGEGVLEALRTMKNDGVVSGMFKLEQGKFNR SIENLVRTEYSHFAVEGVRKSLKDVGIKQTQSWSAEDERVCSICGRRHGKEIKDDWHPPY HGRCRCTEIPMVPEISDDIDKLYEEMFGDLLDEFASKQWGIKLNHPKSTTIANRFSLSKL TEENIGDTERINDIINRTKDVISNYKNETGIDVIKLFEDKKFADKNNPYTDEKSKFIRYL LKNNGFDGLPQKVTDVDDLIPVYRGIVDFKYGDDTSQDQIDRFLRSHFDISGARSSANGR GSYFTSAKFKAQEYANNGNNGQLITAYLLEKINLLDDSIFLKEREAFRKIADNFGEDAKY YAFLLSKNFLMDTQKDIYALISGYDGIQKGAIYNILNRTMLGVKK >gi|308151726|gb|GL476296.1| GENE 11 5117 - 6604 1093 495 aa, chain - ## HITS:1 COG:no KEGG:EF2016 NR:ns ## KEGG: EF2016 # Name: not_defined # Def: portal protein # Organism: E.faecalis # Pathway: not_defined # 1 494 1 489 490 840 90.0 0 MFQNNLSLKRYKRVRTKYSTQINEEVFDPNDFITEMKPFFDDRERKYKAYTSEQNEIDRR PKPNTEIIKVNNKLHAGLYNTIIDQAADHFTGIPIKWDYDITEQRKSILQKMGSKVKDLF SGNVRNETKTPEEFDRLTELVNDMRFAMLDSDTARFQGACGVAFRLLEPVETVEGWQLWA SNIEPWKAEKYENADIFIREKYDTHQKKFFEEMKVITKKRICIYSRYVESNLVSASGTFK LIEEVENPLETFYLSEFKNNTNRYCDFEVAEELSDAFDRSLSDQQNEVEQFKLAYMAISG SRLDEKEAQRMMEQLGIINLPDPQAKVGYVTKDINKDFNEYHLDKLKKLYYTVTKSIDFN DEVFKSNSSGEARKWQIIALEAKTNTKEQYFKEGLKEAAETMSAFIKFRDKLDVDVSKIV FTFSRSLPTDIGYLADALPKLSPFVSKRTIINQIPFVKDPDYEMDLMNLEQGQDYPSGEY DELGGAGNDEEENNG >gi|308151726|gb|GL476296.1| GENE 12 6616 - 7884 570 422 aa, chain - ## HITS:1 COG:lin0105 KEGG:ns NR:ns ## COG: lin0105 COG1783 # Protein_GI_number: 16799183 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Listeria innocua # 12 419 24 443 443 140 26.0 5e-33 MSKKLSEFLPKAFHTTWRIALNSNILHVVEKGGRGSGKSSGIAHIIVQLIMRYPVNAVAI RYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMKITYKPRGNYIVFRGAQNPERIKSL KDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNPPKRRQSWVNK KYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFD NLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISN REFANKAKSKGYISDRIAADSAEPKSIAELNSEHGMPRVFGVKKGPDSVEYGEEWLGDLD FICIDPLRTPNIAKEFENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSEDMDKNNVRFI QY >gi|308151726|gb|GL476296.1| GENE 13 7877 - 8680 504 267 aa, chain - ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 253 294 155 42.0 6e-38 MARKRDPRRDQAKETWLKSNGKKVLKELANELNVSDSQIRKWKSIDKWADELKGNVTNSK SNVTNKGGAPPGNKNAVGNKGNKSASPPKRNKNAVKTGEYETIFADLLSDEEKDIYSKLN DDPFFILDEEIRILKIRQYRMLKRIKDAEAGLNDEEVERLQQLRKVKEPSVIDGKMVTVK REVLKDVQVTRKTFRKLDDILAIEEALTRISNQLTKAIKQQNALLANDAKLQLLKVQTEK VKASLDATNGDMDMPVFIDDISGDEYE >gi|308151726|gb|GL476296.1| GENE 14 8727 - 9449 519 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281416360|ref|YP_003347494.1| ## NR: gi|281416360|ref|YP_003347494.1| hypothetical protein [Enterococcus phage phiFL1A] conserved hypothetical protein [Enterococcus phage phiFL1A] conserved hypothetical protein [Enterococcus phage phiFL1B] hypothetical protein HMPREF9496_02467 [Enterococcus faecalis TX4000] # 1 240 1 240 240 422 100.0 1e-116 MENNSKSADDKVIKNYEETLSIIFKKIPDSNEPLIYMVASEIGFEILDLKLSINALLESA CYAGILALSRTMVENYIYLMYILEQDSFKRSKAYQLNMYRDIKKQYEAQKKNKKLQQMSE QDQSFNEQIVLYEQNEPKIIEYLEELDSLYGHRLVPWYNDDEETKGIYKLFERLDKSDWY DGIYRYLCMESHGNNGLKHFEMLEDGTAKLKPTTLDEKQISSITCSILDKTKKELEKLII >gi|308151726|gb|GL476296.1| GENE 15 9553 - 9630 57 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSYWYVSLTHEYPQPNRSTDSVRV >gi|308151726|gb|GL476296.1| GENE 16 10166 - 10780 450 204 aa, chain - ## HITS:1 COG:no KEGG:EF0126 NR:ns ## KEGG: EF0126 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 6 195 13 198 205 83 31.0 4e-15 MSLNSLLLLLIFGGIAIIGYFVKDLPNLFRELAVEESRGKNEREIQKEAFFRQIKGSDID EAFNYWTSLMVDMDNKINQIGTASGKKEFVKMQQKVLMYGSNGTVTILSSMMQHVYRRGE LKNTVKVSFGDQDSTKENIQNYMLMFYIAYLISSLKKDFTGYSIDPIEILLIKINDIDSH KNKPLFEQAEKNVRKELKKLGVTI >gi|308151726|gb|GL476296.1| GENE 17 11311 - 11727 278 138 aa, chain - ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 237 97.0 1e-61 MILLLKEVDFRQTKANARNVLKSFRRLERIAGRSLIDLKSPIITEMPKSQSHGNKTEDAL VQLADAEAERDAILSALMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYK >gi|308151726|gb|GL476296.1| GENE 18 12458 - 12574 83 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKFKEFNIQLFDVHIYIKRLSSFKTNKNSIKKLTSFR >gi|308151726|gb|GL476296.1| GENE 19 12634 - 12822 145 62 aa, chain - ## HITS:1 COG:no KEGG:EF2128 NR:ns ## KEGG: EF2128 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 80 138 141 103 89.0 3e-21 MKLERKYCDKKSDLDNYFKAVTDAAEGILYKNDGQIAVMVCQKLYSMRPRTELEITSLEE QV >gi|308151726|gb|GL476296.1| GENE 20 12839 - 13057 268 72 aa, chain - ## HITS:1 COG:no KEGG:EF2128 NR:ns ## KEGG: EF2128 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 141 94 74.0 9e-19 MRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKAYLRKAKPELIEKGAIFAHV TFYVPAHISIKF >gi|308151726|gb|GL476296.1| GENE 21 13075 - 13374 407 99 aa, chain - ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 99 4 102 104 102 54.0 5e-21 MNELVKLVEEWAKEKHLDKAEPEKQMLKVIDEVGEVGAALARNNENDLRDGIGDVVVTLI ILAMQNNMDLYECLNQAYCEIKNRQGKMVNGVFVKEADL >gi|308151726|gb|GL476296.1| GENE 22 13375 - 13677 357 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545388|ref|ZP_04434113.1| ## NR: gi|229545388|ref|ZP_04434113.1| hypothetical protein HMPREF0349_0605 [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] hypothetical protein [Enterococcus phage phiFL3A] hypothetical protein HMPREF9521_01590 [Enterococcus faecalis TX2134] hypothetical protein HMPREF0349_0605 [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus phage phiFL3A] hypothetical protein HMPREF9521_01590 [Enterococcus faecalis TX2134] conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 100 1 100 100 169 100.0 8e-41 MIEMRVLDYRITSDDRQVIVNKARRNEHGELTILTDKDGTQKESLALIGYYGNLSKALVA IERDYVLSSGKTIQTVKEYKKELESIHSKLKRELDFGEEF >gi|308151726|gb|GL476296.1| GENE 23 13681 - 14643 617 320 aa, chain - ## HITS:1 COG:no KEGG:EF2130 NR:ns ## KEGG: EF2130 # Name: not_defined # Def: DnaD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 257 283 204 46.0 6e-51 MARPAKEGLDYFPLDVGIFEDEKIEAIAGEFGIKGELAVIKLLCAIYKKGYFILWDDLSQ ATLLKRLPGVSKEMLNQIVNRLVLWGFFDKELFDSVKVLTSENIQATFFEATKRRKTPKP TKYIVNVNSNSQSETVNADINTQSKVKESKVNKSKVNKKETESSINPSSPETSVEKAFFE EPLGEEKLTELIRYYSQNVSPATPVNITDLQYDLADFDGYLELLKEAVNICARNNERRYS YFAGILKNWRANGVKTYADYLNNERERADKKTQNKQYQNKPVRQEKVPEWMNQANGEEEK LSPEEQAEFERQMQELLGGE >gi|308151726|gb|GL476296.1| GENE 24 14657 - 15547 1112 296 aa, chain - ## HITS:1 COG:lin0085 KEGG:ns NR:ns ## COG: lin0085 COG3723 # Protein_GI_number: 16799163 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Listeria innocua # 1 253 1 239 271 256 54.0 5e-68 MATNETLKNQLSQQNQKQVPANQLGLKGLMNTPTMKRKFEEVLHENANAFMSNVMTLVSN DSYLAESEPMSILSGALTAATLNLGLDKNLGYAYLVPFNTKNKQTGKWERKAQFILGYKG YIQLAQRSGKYKALNVIEVYEGELLSWNRLTEEFEFDPNGRQSDDVIGYVGYFELLNGFK KTVYWTKQEIEAHRIANSKDKEKTKLSGVWATDYNAMARKTVLRNMLSKWGILSIEMQEA TTSDEKVQQMQEDGNIISETEVEENTTMKTAEVINEADSDSLNQTDLFDTKNPPLE >gi|308151726|gb|GL476296.1| GENE 25 15550 - 16491 801 313 aa, chain - ## HITS:1 COG:BH3544 KEGG:ns NR:ns ## COG: BH3544 COG5377 # Protein_GI_number: 15616106 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus halodurans # 5 313 10 317 320 274 46.0 1e-73 MIQSTLSMSHQEWLEDRRKGIGGSDVATILGLNQYKSAYQLWLEKTGQVELKDTESEPAY WGNVLEEVVAKEFQERTGKKVRRRNQVFEHSLHPFLRANIDREVVRENAILECKTANQFL AKEWAGDEVPLSYLCQVQHYMNVLNKDYCYIAVLIGGQKFIWKRVERDQELIDVLTEQLV DFWENNVIKGVEPIIDGSKATADFLKDKYSDIEETQTTLPASFDELLDQKNEMKKTKKEL DVAIRKIENEIKSELGKRNASIGITKKHIVEWKEIPTKRLNSKKFAEKYPQIAEDEEIYM VTTPRRLIEKEIK >gi|308151726|gb|GL476296.1| GENE 26 16488 - 16589 172 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPEFDSLGARQEPPEEKEVLELTWEYDEEEDER >gi|308151726|gb|GL476296.1| GENE 27 16589 - 16816 249 75 aa, chain - ## HITS:1 COG:no KEGG:EF2843 NR:ns ## KEGG: EF2843 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 74 105 68.0 8e-22 MIEVRGLGNDIYELMLANAQNNIIQSVRTSASYGNTSCVVSSKGATKPFLDQLQMQGVDY IELEDEKIKLFWEGL >gi|308151726|gb|GL476296.1| GENE 28 16816 - 17139 384 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545382|ref|ZP_04434107.1| ## NR: gi|229545382|ref|ZP_04434107.1| hypothetical protein HMPREF0349_0599 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01538 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02927 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_0599 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02927 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01538 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX0645] hypothetical protein EF62_2395 [Enterococcus faecalis 62] # 1 107 1 107 107 177 100.0 2e-43 MNDKIQNLLMELVKECRKGKVAIVLSTVDSEMMEASSVLLAGSLPEQAIAFSELFEKFKE EALAHDCDCPQCKQIKESFIGAESSSTKQNNEEKLDILLKDFLRGEL >gi|308151726|gb|GL476296.1| GENE 29 17183 - 17368 301 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545381|ref|ZP_04434106.1| ## NR: gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein EF62_2396 [Enterococcus faecalis 62] hypothetical protein HMPREF9520_03429 [Enterococcus faecalis TX1467] # 1 61 1 61 61 97 100.0 4e-19 MYVAIGEASRETYVIGETQAEVMRKLFEEYPYVSADKNVYPERLSIVQKEPRTSANEQGK Y >gi|308151726|gb|GL476296.1| GENE 30 17359 - 17553 190 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545380|ref|ZP_04434105.1| ## NR: gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_03430 [Enterococcus faecalis TX1467] # 1 64 1 64 64 123 100.0 3e-27 MKAIRETRLVGAFLLMIVLGVLLKSHFSMPILATLSAPFFIHWFFNWDEAKYQYSKKGGD KKCM >gi|308151726|gb|GL476296.1| GENE 31 17606 - 17788 183 60 aa, chain + ## HITS:1 COG:no KEGG:EF2036 NR:ns ## KEGG: EF2036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 62 79 88.0 3e-14 MFFVIKRASDKKYYFLIKTEENEIIASSKTYYYKSSVLEIIESIKNDMNPKAIIVDTTFN >gi|308151726|gb|GL476296.1| GENE 32 17828 - 18550 670 240 aa, chain - ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 124 29 144 239 75 38.0 7e-14 MDNLVIMKNQQAVTTSLQVAETFNKNHRDVLAAIDDLKEGVAENYADLFYEDSYIHPQNK QKYRQIIMNRDGFTLLAMGFTGQKALKFKLKYIEAFNQMEELLKTQSNLPMNNTELLLEA ALKHERGLTLVNQRLDKLETETTINRSQQRKIQGLVSSTVIKVLGGKKTSAYKDSSIKQS AFSNCYKQLKALFDVASYIDIPKVRYEEALTLIPKWKPDLELQARIDMANGNGDMFKEVS >gi|308151726|gb|GL476296.1| GENE 33 18589 - 18900 205 103 aa, chain - ## HITS:1 COG:no KEGG:EF2038 NR:ns ## KEGG: EF2038 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 183 98.0 2e-45 MENFLDTSSKNFLYNIIEKILRKMFEQVINEASQGLNERAEYLDIKQLSSRYSMSVPEVE QNFVKDKRMQIIEKRKPGTSKGKRYWPAKEAIKICNDIMNHWD >gi|308151726|gb|GL476296.1| GENE 34 18912 - 19103 222 63 aa, chain - ## HITS:1 COG:no KEGG:EF2039 NR:ns ## KEGG: EF2039 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 84 71.0 1e-15 MPDTSVSRQKIRDYFESKGISLVSVATYFDIPRQDLIDYLNGKNKSKKAHETLLAIIDFY KIR >gi|308151726|gb|GL476296.1| GENE 35 19394 - 19738 350 114 aa, chain + ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 112 1 107 107 72 41.0 2e-13 MITFERIKNLAKQKDKSLQQVARELKYGENYFYSLNAGKQPTAEKLQEIANYFNVSVDYL LGRTDNPNSDNLEEDEIATFFRVNTEDLTESEKDQLREELKEYLEFMKSRLKNK >gi|308151726|gb|GL476296.1| GENE 36 19752 - 20390 385 212 aa, chain + ## HITS:1 COG:no KEGG:EF2041 NR:ns ## KEGG: EF2041 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 212 4 215 216 395 96.0 1e-109 MYLDYDTYFEYHDQTYIIIEKVANYYGIELKELRWKHYKDYMIDVENVDIIPYSFGDVSR KIFSGNIIRFHDKCGISYNSTMVKGRQNFSILHESAHYFFDMNKECKSQSFSDLITGKGY TSEDEPKEIRANIFASLALINNEALKECLQKQMSFRQICEEFEMSAAALYVRLYDFLTKI FLLNPCLARSAINQYRYNYDSTKLISYVKMVL >gi|308151726|gb|GL476296.1| GENE 37 20508 - 21272 501 254 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 183 254 286 354 354 85 68.0 1e-15 MKKIVTLSLSLLLLTACSNETKQVSKQNSSSTTITSEKKDISDSKKINSSSSESSTIHYS STQTDETTQMELGGSTYSQILETYTQKLTTTTPILIEELRNEGEPIKGNVSALAEVLNSK IGKLADISNAGISEMASIQLSNKDDYSLYESWANKLTDVYTAEANKLTDLYTELAAVNTE ISTSQQPLPSTQSSSAIEQPQSSEVEQPVYDKVRSGEGARQVAERNGLTLEQLFALNPGI DTSVFYPGQPLRIK >gi|308151726|gb|GL476296.1| GENE 38 21287 - 21616 398 109 aa, chain + ## HITS:1 COG:no KEGG:LCABL_12950 NR:ns ## KEGG: LCABL_12950 # Name: not_defined # Def: prophage Lp2 protein 7 # Organism: L.casei_BL23 # Pathway: not_defined # 2 106 3 110 116 102 48.0 4e-21 MKKIKYFIYTLLLLIVFTACGTKEVKPDYTSKEAETALNNGEDLTGKTVQFTVDKYVPDG SLGYTIQTGDHLNFVSSKNPDVRTGDKVIAKIKKVENLMGSWIITFDKK >gi|308151726|gb|GL476296.1| GENE 39 21691 - 22839 419 382 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 63 379 49 368 368 113 25.0 8e-25 MAKLNWSKKYKYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQY DLETQNTSFIENKQLTIDEWIKVWIPYAQDNWSVSTKQNIESAIKFHISPLIGNQKLSSL NKITYKREFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKFDLSNNV RSFSKKELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTR GDYGENKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPI KQSRITYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVY SDVLKEEEKETADMMDKLIENL >gi|308151726|gb|GL476296.1| GENE 40 22867 - 23310 275 147 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1391 NR:ns ## KEGG: MPTP_1391 # Name: not_defined # Def: late competence protein ComGD, access of DNA to ComEA # Organism: M.plutonius # Pathway: not_defined # 6 134 10 134 134 77 37.0 2e-13 MNKSAGFTLMETLASLTIVCFMTMLPTLAIHRWQETLKIEQFLATVEKQLRFAQQQAIVL EETQEVWFFEEQQSFSFPDKLNQSARRTSLAVPEKMTVSGPSKLSFLHSSGNNGRLVKYI FTWTEKKQQLILQFQMGSGRAFIYQWF >gi|308151726|gb|GL476296.1| GENE 41 23307 - 23582 406 91 aa, chain - ## HITS:1 COG:SP2051 KEGG:ns NR:ns ## COG: SP2051 COG4537 # Protein_GI_number: 15901871 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 9 92 108 84 63.0 6e-17 MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYT LEKNRTPSLNELVKEGYITKEQLDKYTAEKQ >gi|308151726|gb|GL476296.1| GENE 42 23582 - 24496 741 304 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 17 300 77 353 357 174 36.0 2e-43 MKKSNALPQHSITFLVEGFSSGIALQALVEELGFSTMVSAQLSFATAHGDLVGTLQAISE HFFQTEKYRQQFYKIISYPLLLIVFLILVIVGIRQFLLPQLMENDANSYSKNIGILLIVY SPYILVTLVFVLSFSFFILNRYLKHQSAIQRAFIYLKLPIIRGLYREYVSAFFALEWGKL LAQGLEMKEVIDLMRHTTNYPLMKELAGAISEGLLVGETLHRQLAAYPFFTKALGLMIQQ GEVKGKLGKELMVYSNVCFQVFFKKIERVITLVQPFIFIIIACLIIGVYGAMLLPIYGNM EGVL >gi|308151726|gb|GL476296.1| GENE 43 24585 - 25553 812 322 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 5 271 2 266 313 251 50.0 1e-66 MTENVKKLAHQLIEWGVLHGAQDVYFLPNDTEIAIFFRTGMQRTPYTQVSAEIGEKLIFH FKFIGGMDVGERRKAQLGATTYLIGETKQRLRLSSVGDFQNRESLVIRFLHRFGEQAEHF FFPHQLNEIEASCQKRGLYLFSGPVGSGKTTTMYRVAKKRSGEQQVIAIEDPVEIEEKRF LQLQTNEKIQLTYEALIKVCLRHHPDILIIGEIRDGETAQAVIRAALTGHTIFATIHARN LLGVQRRLIELGGPEHELAECLQGIIYQQILTTTINKEQVAGILYDYFFFKGAVIKSSWQ KNLRKAWAYGFITEKTYFQAIE >gi|308151726|gb|GL476296.1| GENE 44 25794 - 27122 1393 442 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 437 5 437 440 422 60.0 1e-118 MEKKQLKREITTFGALSTVMGTVIGAGVFFKAASVVGHAQSASLAIFAWVLGGALTICAG LTSAELATAIPETGGAVKYIEYTYGKLAGFLLGWAQSIIYYPANISALSIIFSTQLINLF HLSANLLIPIAILAGTSITIINLLGTKIASLVQSTTLVVKLIPIALISLVGLFTPGQVAV SLFPVETTANTGFLVAFSGALVATMFAYDGWLGVGNVAGEMKRPERDLPKAIIFGLLLIT LIYALINFVFLKTLPIEQIAGNLNAASDASVAIFGPIGGKIVTIGILISVYGALNGYTMT GIRIPYALALDNLMPFSRQFQKLSKRFVVPYVAGIFQLAVAIIMMFFGTFDLLTDMLVFV MWLFNLLIFLAVFILRKREPELKRPYKVPGYPIIPIIASLGGIFILVTTSITQPILAFIG IGITLLGIPVYLVNKQKTKPKT >gi|308151726|gb|GL476296.1| GENE 45 27412 - 28485 1263 357 aa, chain - ## HITS:1 COG:L184159 KEGG:ns NR:ns ## COG: L184159 COG0820 # Protein_GI_number: 15672161 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Lactococcus lactis # 3 355 10 363 365 553 75.0 1e-157 MQKESIYGLTREQLVDWFLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEEN FSLNPLKQVIVQEAQDGTVKYLFELPDKNMIETVLMRQEYGLSVCVTTQVGCNIGCTFCA SGLLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYVNVMNFLRTI NDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTLIMRINRSFPI EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS EHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ >gi|308151726|gb|GL476296.1| GENE 46 28609 - 30438 1660 609 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 603 1 620 622 257 32.0 4e-68 MNFNQFVIRNTIRNKHLYLAYFLSTMFSVMIFFTFTGFVFHPALANGLNPKAQMGMTAAA IIIYGFSFLFVLYSMDVFIQSRKKEFGTLMIQGMSPKQLKKMIFIENLVIGFFATIFGSI LGVGFSQFILWISNLLMHLGLGFYLPVMPFIITVISFAVLFLVISFFIQFRLPKATLQEL LKAGEMGKGEIKSSKVKSFLAVLLLIVGYGIALVAKGQLVLMVMFPVILLVILGTKFLFD QLSVSVIERLKRKPKIFWKKTNMVVLSDLAFRMKDNARSFFLVSVISTVAFAAIGTLYGV NEMIFKGISSVPYELTLSDSTNPENQEMKQFATKTFQEKNIQFDQIDYTMYKTSAGIQLI KTSEYNKLAKFIDEPTLTGEKVVNLSQKDAPSAASVDVKSVQLGNDQVLNIDKTEETNVL PTFGGVVVIPDSTSTDGIKAETETIWQPKAGTNREELIKAENIIGDKYPMLVGTAAMSAA ITQYYTPVLFVGLFIGIVFFVSAGSFLYFRLYSDMNTDVEKFKMIYKLGLTKKELKKMIY QQVGILFFTPIVVSFIHGAVALKAMYAVLDQPMQLAGWEVLGVFLLIQVVYYLIARTFYF KKVYHLVKD >gi|308151726|gb|GL476296.1| GENE 47 30428 - 31177 1046 249 aa, chain - ## HITS:1 COG:BS_yxdL KEGG:ns NR:ns ## COG: BS_yxdL COG1136 # Protein_GI_number: 16081015 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 249 4 252 257 278 54.0 6e-75 MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGE ILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQ LAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVM GLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIIQNGNQKEFYDLIMVKLA EIEGVDNEF >gi|308151726|gb|GL476296.1| GENE 48 31295 - 31996 826 233 aa, chain - ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 6 187 33 206 265 76 28.0 4e-14 MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEELFNVSKITIRRAIEMLATEEFV EKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGE EVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEV ATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA >gi|308151726|gb|GL476296.1| GENE 49 32127 - 34550 2636 807 aa, chain - ## HITS:1 COG:SPy0458 KEGG:ns NR:ns ## COG: SPy0458 COG1674 # Protein_GI_number: 15674577 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 792 3 798 801 684 50.0 0 MAQKRSTNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLR LVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSG SQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGI FLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQ QKLQERERMEQAAADRLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKP QREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQ TFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPG KSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAG STGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQ ALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMM VASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRT IIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMP TDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVI GPSEGSKPRKVFLQAESEEAAPETPEQ >gi|308151726|gb|GL476296.1| GENE 50 34864 - 36075 1646 403 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 402 1 402 403 345 44.0 6e-95 MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKIT YNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQE HALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFA EIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVY QDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDC SAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALG IVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH >gi|308151726|gb|GL476296.1| GENE 51 36104 - 37009 802 301 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 298 301 286 53.0 2e-77 MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDN YNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMG LYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFL VALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAV GLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWW L >gi|308151726|gb|GL476296.1| GENE 52 37131 - 38111 1087 326 aa, chain + ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 1 326 1 326 326 306 46.0 4e-83 MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLG DEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGTVTIQSQYGKDVAVYTGDLLF TEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELF SLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGV YTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAIT DIQQLPDGTAKETLLSLTELLLHRSF >gi|308151726|gb|GL476296.1| GENE 53 38191 - 39954 234 587 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 312 568 91 354 398 94 27 2e-18 MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLP ENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTK YRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVV VFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANV RALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLID AFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQEKKV LNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYI GVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVAQLPEGLQTMVDEAGLR FSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQ GVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE >gi|308151726|gb|GL476296.1| GENE 54 39954 - 41687 173 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 560 15 228 245 71 27 2e-11 MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLF FIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEG ISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQS KADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILS TFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDG KNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGR KKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPY IFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIQTLIGESGRMLSGGQAQR VALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDY ILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ >gi|308151726|gb|GL476296.1| GENE 55 41692 - 42705 1057 337 aa, chain - ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 331 331 357 61.0 2e-98 MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVW LLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTL SIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNY IALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLT VIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLK IMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY >gi|308151726|gb|GL476296.1| GENE 56 42702 - 44120 1540 472 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 446 1 451 491 543 60.0 1e-154 MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFL LSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDK MNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWY EFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQM KALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSG SVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPS LYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITS NVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE >gi|308151726|gb|GL476296.1| GENE 57 44122 - 44184 83 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEMNNSGKLVSLCGGKLGRK >gi|308151726|gb|GL476296.1| GENE 58 44280 - 44378 65 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIEEREEILVAPKKIVRNASVLFGFCLRKLYT >gi|308151726|gb|GL476296.1| GENE 59 45050 - 45913 855 287 aa, chain - ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 124 284 1 161 163 133 40.0 5e-31 MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFVAGMSLAEYIKKRRLAEA NLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWTGQAPSEVMKTQIQKTFPKFSFYIDIKG GQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDVYPHQV VNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQE TWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK >gi|308151726|gb|GL476296.1| GENE 60 45998 - 48079 1930 693 aa, chain - ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 2 584 1 615 618 458 42.0 1e-128 MVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQ TWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILE YVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALT VKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKER QEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSL YETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKV TDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFH QNKVVVAGWKTTAEQPLSTVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLG TPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAIAS GQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVC TNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMT KHEERRLMKKYSQPDEPEESALAQALKAAMNQE >gi|308151726|gb|GL476296.1| GENE 61 48210 - 48575 300 121 aa, chain - ## HITS:1 COG:L100735 KEGG:ns NR:ns ## COG: L100735 COG4699 # Protein_GI_number: 15673831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 119 1 119 122 99 43.0 1e-21 MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNY LTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKV I >gi|308151726|gb|GL476296.1| GENE 62 48673 - 49242 749 189 aa, chain - ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 185 2 183 187 170 50.0 1e-42 MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVD LLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIH ETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIED FIASLEVAR >gi|308151726|gb|GL476296.1| GENE 63 49375 - 49890 593 171 aa, chain + ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 1 170 3 165 168 113 38.0 1e-25 MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGF PFIHWLAANVPVTNEIPEGFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYL GLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQRLAKAKFEFLY >gi|308151726|gb|GL476296.1| GENE 64 49907 - 51145 1166 412 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 16 411 4 399 402 422 53.0 1e-118 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWS GITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLL QGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFF ITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNN SISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLI LAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQ ATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKEKNDD >gi|308151726|gb|GL476296.1| GENE 65 51325 - 52449 1380 374 aa, chain - ## HITS:1 COG:SPy2188 KEGG:ns NR:ns ## COG: SPy2188 COG0482 # Protein_GI_number: 15675922 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 373 373 563 77.0 1e-160 MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVA KVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLG ADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR AIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYT IGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPM PKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGL IDRAYQDEKELQYV >gi|308151726|gb|GL476296.1| GENE 66 52675 - 53019 449 114 aa, chain - ## HITS:1 COG:no KEGG:EF2071 NR:ns ## KEGG: EF2071 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 208 100.0 5e-53 MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKI TITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE >gi|308151726|gb|GL476296.1| GENE 67 53087 - 54232 1170 381 aa, chain - ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 381 5 381 382 410 56.0 1e-114 MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQA KPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYL PVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQA YGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENL AGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLH FKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGN TPEEIATFSEVLVAVIQQLKK >gi|308151726|gb|GL476296.1| GENE 68 54389 - 55363 1324 324 aa, chain - ## HITS:1 COG:SPy1123 KEGG:ns NR:ns ## COG: SPy1123 COG0462 # Protein_GI_number: 15675103 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 324 1 323 326 416 61.0 1e-116 MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVY IIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVAN MLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSG VQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEV LMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELM GEALLRIHENKPMSPLFRLEPKGE >gi|308151726|gb|GL476296.1| GENE 69 55576 - 56325 189 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 226 17 227 245 77 28 3e-13 MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKE RDVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAA MAALKMVQLEDYAQRQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMD ILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLG DLLIQGVAK >gi|308151726|gb|GL476296.1| GENE 70 56322 - 57191 1002 289 aa, chain + ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 282 3 280 280 285 67.0 7e-77 MIAAFIDGLFRYQFLQNALLTSVIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSY MFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDL YHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYA LMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFF SYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI >gi|308151726|gb|GL476296.1| GENE 71 57178 - 58104 1286 308 aa, chain + ## HITS:1 COG:lin1961 KEGG:ns NR:ns ## COG: lin1961 COG0803 # Protein_GI_number: 16801027 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 15 305 14 308 310 347 61.0 2e-95 MKKFSLFFLTLLAGLTLAACGNQAAEKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPI GTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNV TPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSK LHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDT IKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTK IHDGLMSK >gi|308151726|gb|GL476296.1| GENE 72 58159 - 59697 1629 512 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 512 518 429 44.0 1e-120 MSILTIEHLTHRFGEKVLYEEASLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTI QWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQA GKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDV LLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGN VEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLAP PGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKS TLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPNEQLTPLDYLSDRFPDTTIKERRSH LARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAI HVYPGTVFLVSHEADFYEEIVDRVIDIEELVK >gi|308151726|gb|GL476296.1| GENE 73 59845 - 59952 124 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFVLTDKLTRKVAPDSLRTDEALLWSRAINFFIA >gi|308151726|gb|GL476296.1| GENE 74 60067 - 61260 1683 397 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 9 397 5 390 393 266 38.0 4e-71 MSTITIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGE TGVLATIEGGLGAGKTILLRADIDALELPDATGAAYASKNPGLNHACGHDGHAAALLGAA KVLKKHQDTFSGTVKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVAT KGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGI GVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAA ANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPE NPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE >gi|308151726|gb|GL476296.1| GENE 75 61275 - 62108 1104 277 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 271 32 281 286 211 50.0 9e-55 MKKFSKLIGLIGVLAFTIAGCASGSAKDTKTETVKLGVVGTKNDEWESVKDRLKKKNIDL QLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKL KDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITE LDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIVVAREEDQEN KLYQKVVEEYQQEETKKVIAETSKGANVPAWETFGKK >gi|308151726|gb|GL476296.1| GENE 76 62128 - 62808 938 226 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 226 1 230 231 183 53.0 2e-46 MYQLFEKYFPNVVQLKQEFLQSTWETLYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNP PLYSVLEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIEN ALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAG GLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH >gi|308151726|gb|GL476296.1| GENE 77 62816 - 63895 1036 359 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 345 5 354 354 362 55.0 1e-100 MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAG TVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKSERRQK ISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQIL ALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDF IRTATHIDQALTTILEYPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYG NVEIVQNVPIGHLIVVLSGDEAQRQQALAYLAKQGVRTNVLNLSANEEKAEFTGDLKKE >gi|308151726|gb|GL476296.1| GENE 78 64000 - 64137 74 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPPHVQNLLTQIPFSSTEQYVRYPSSITGAPVAALCLTLGALAQ >gi|308151726|gb|GL476296.1| GENE 79 65309 - 66799 848 496 aa, chain + ## HITS:1 COG:no KEGG:EF2146 NR:ns ## KEGG: EF2146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 857 99.0 0 MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDF GTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIIIDQKISWGSSLV ATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQ ASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIG GSQALPSLHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLSNSKINLGLS FLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLT SLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAVLTDDLKNVVTNERKKVYLNTFFKN STVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNH FYDIYTNNKEIFVFMK >gi|308151726|gb|GL476296.1| GENE 80 67012 - 67191 166 59 aa, chain + ## HITS:1 COG:no KEGG:EF2147 NR:ns ## KEGG: EF2147 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 5 63 63 87 100.0 2e-16 MRTRQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ >gi|308151726|gb|GL476296.1| GENE 81 67279 - 68244 1090 321 aa, chain - ## HITS:1 COG:no KEGG:EF2148 NR:ns ## KEGG: EF2148 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 503 98.0 1e-141 MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMGEA DEALALAEAFQESYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTKKITLAQQKTLEQ QLMQVEEAYQQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMN QALSYFAREWFIEELALLQFSEPLTFLWYDNQPQAVLLEGKTGPLNTPIYSEICTELRNR LENDDPIMLQHLEEEIRLHLTYLYPLAETVISDPTIWVLGYLATYYPEYIEKELTEAKGR QIDAVQNVQQAIRTAFTQIML >gi|308151726|gb|GL476296.1| GENE 82 68420 - 68710 483 96 aa, chain - ## HITS:1 COG:no KEGG:EF2149 NR:ns ## KEGG: EF2149 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 146 97.0 3e-34 MENQVEVMTYAQLKEIMQVLEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVA DVLTNESFAGYSLEEKAEKMNAEGDLETAIIIRNLY >gi|308151726|gb|GL476296.1| GENE 83 68759 - 70039 1450 426 aa, chain - ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 18 422 3 407 410 276 36.0 6e-74 MLIYLTKKDCELFDMDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGV KREGQLIAACILSKKKVKIGYAFDIDGGILMDYTDKKCVEAFFTGLKKYVKKNDGLYLTF TPNKQICLRDFNGGEVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEE DLWKSYGKDAKYDIKKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVY EEFGERAKFMVAELNFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDE VRTVRKRIDEAKEMKTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKML TYTVENNIPKYNFYGVDGVFDGSDGVLKFKQSFGGHVEELMGNFQWKAKPMKYALYHALK TIKEKV >gi|308151726|gb|GL476296.1| GENE 84 70308 - 72116 2170 602 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 602 1 602 602 744 63.0 0 MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLT PEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLI GDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNIIYVAKNKSPLL IGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLD LNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTLDEALLEKINQCDRIYIIACGT SYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQV NELGHPSLTLTNVAGSTLSREADDTLLLHAGPEIAVASTKAYTAQIAVLAILAKAIGEER QTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEA ALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGAR NIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVT VE >gi|308151726|gb|GL476296.1| GENE 85 72559 - 73377 948 272 aa, chain - ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 2 272 7 277 277 310 58.0 3e-84 MLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNIKWHQI SFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFNLVLKY FCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISLAQQAR GYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQQPFHL RDFSVMLLALCLLGISFWLFHVNGGRFYNPFQ >gi|308151726|gb|GL476296.1| GENE 86 73389 - 75095 278 568 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 305 556 134 384 398 111 31 1e-23 MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNI YEGEIQGTATVAGENIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQA EMKKAVQKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRA GQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTL TQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGETVLPKMTQWSVQPSSVSAVKGAEL LRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKIL WEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNIL HICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEE LNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLF TFAKALGLENPLLFTEKFVAYDREVRFG >gi|308151726|gb|GL476296.1| GENE 87 75196 - 75747 480 183 aa, chain - ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 183 3 184 184 234 67.0 4e-62 MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLI GLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFG NIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSL SKD >gi|308151726|gb|GL476296.1| GENE 88 75977 - 77332 1765 451 aa, chain - ## HITS:1 COG:SPy1038 KEGG:ns NR:ns ## COG: SPy1038 COG1109 # Protein_GI_number: 15675035 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 450 451 606 71.0 1e-173 MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLE QALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGF KLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVC LDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGL AFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEI GLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGK KLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPL LRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE >gi|308151726|gb|GL476296.1| GENE 89 77325 - 78488 1416 387 aa, chain - ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 312 3 314 318 146 33.0 7e-35 MRKASQKSWFNGLLSLLFALLLFFNANATGNNPSNSGSSQTYSETLNNIPVQVQYDKDKY YVSGFEESVNVHLRSANRIQLNMESNADTRNFQVVADLTKLPLGTSEVPLTVRGLSSAVT AEIEPKTVTVTIEKRVTKKFDVEAQLSDNIEKEGYKVKNISVDPKTVEVTTGEETAKAID KVIAPVSSAKQTIDTIKQTVNVQALDAKGQVLSIENPAPQVKVTVGLTAPTKDVPLNVSM TGTPPAGIAHYNYSLSTYQVRVSGPQSILDTLESIEVPVDISDIRKETKQSVTIPVNGEY VVTPDEVDVSLSPVYNQQQSSNTNETSEEPASSTTVGSGSQAVQPSTSSQVESNTSETTS EGSTVESTTAGSTENTENQVTKENQNG >gi|308151726|gb|GL476296.1| GENE 90 78485 - 79369 901 294 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 30 268 14 253 273 288 59.0 6e-78 MSFQLNQLLDLNYWQQVISTDFLSKDFVINIIDILVVWYLVYKLIMLVRGTKAVQLLKGV AVFIIIRILSEIIGLHTLSWLMNQVIMYGVIAAVVIFQPEVRRGLEHLGRSSFFRPNKGA QQEDERIIQAFDKAIQYMSKRKIGALITIERNTGLDEYIETGIDLDADITGELLINIFIP NTPLHDGAVIIKNEKIAVASAYLPLLESNLIPKEFGTRHRAAVGISEVSDAITIVVSEET GDVSLTLNNELIPGLTQEEYLTILRKELISESSEDKKSALQHFIDDVTKGVKRK >gi|308151726|gb|GL476296.1| GENE 91 79566 - 83255 4027 1229 aa, chain - ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 1 416 1 414 414 614 70.0 1e-175 MRKMKTMDGNAAAAYISYAFTELAAIYPITPSSTMAELVDQWSAEGKKNIFGQPVKVVEM QSEAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVASRALTTNAL NIFGDQGDVMAARQTGFAMLSESSVQEVMDLAPVAHLASIEASVPFMNFFDGFRTSHEIQ KVAVLDYEELAPLVNQEKLAEFRRRSMNPNHPSVSGMNQNPDIHFQQRETINPYYEKLPG IVQKYMKEINRLRGTNYDLVTYYGAEDAEEVIVTMGSVAQTIEQTVDYLQEQGRKVGFLN VHLYRPFPVETFLEKIPQSVKAIAVLDRTKEPGAGGEPLLLDVQSAMYEADIRPTIIGGR YGLGSKDVLPNQIVAVFDELMKERSAMKKRFTIGIDDDLTYTSLEVGKPLDLTNPKTYQA KFWGFGSDGTVGANKSAIKIIGDHTDKYAQGFFYYDSKKSGGLTVSHLRFGETPIRSTYL IEHSDFVACHTAAYLHTYDLVKGLKKGGTFLLNTIWNDEQLARFLPNQLKRYLAENEIQF YTINAVKLASEVGLGGRINTAMETAFFKLAQIMPFEQVLPILKDEALKSYGHKSMKVVEK NIQAIDKTVELLHQVPVPAEWKTLEVQPRKRSENVSDFVHEIVEPINRQEGNALSVATLA KNGMTDGRMPLGTAAVEKRGVALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTE APEGFIVRDLRGADGLKYRIQVSVKDCTGCGLCVEACPAKGKALVMRPYEEEKEQAMNWA FAMTLRQKENPAKPNTVLGSQFNKPLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATG CSSIWGAAAGVTPYTTNEQGQGPAWSNSLLEDNAEFGYGMLLATQARRERLASKMTKAFS VASDSLRLLMEDWIAHLSESEGTQQRAAKLRAALLEEKTNQPLLEAIYDDQDLFVKPSQW MIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGK YASKKDLGMMAMTYENVYVAQIASGANQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLAG GMSQTLKEAKDAVHSGYWSLYRYNPLLREKGKEPMILDFKKPDFSLMKEFMRQQVRFASL ESSQPDTAELLFNKTINDAKRRFYNYARLAGQEEKIRAKLEKQSEPEITAPENEKPRVKK ERVVDPEAKARRAARRAERAAKRKQRGQD >gi|308151726|gb|GL476296.1| GENE 92 83555 - 84895 1496 446 aa, chain - ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 7 446 5 444 444 714 75.0 0 MTRKAKTAEEIKHIAEEENVRFLRLMFTDIMGTIKNVEVPVSQLDKVLDNKMMFDGSSIE GFVRIEESDMYLYPDLSTWMIFPWESDHGKVARLICDIYNPDGTPFAGDPRGNLKRALAD MKELGFTSFNLGPEPEFFLFKLDENGEITTDLNDKGGYFDFAPTDLGENCRRDIVLELES LGFEVEASHHEVAPGQHEIDFKYADVVDACDNIQTFKLVVKTIARKHGLHATFMPKPLFG INGSGMHCNMSLFNEEGNVFYDESGEMGLSQTAYHFLGGLLKHARAYTAVCNPTVNSYKR LVPGYEAPVYVAWSGRNRSPLIRVPESRGLSTRLELRSVDPSANPYLTMAVLLQAGLDGI RNELTPPPAVDRNIYVMNEEERQHAQIEDLPSTLHNAIKELRKDQVMIDALGRHIFANFV EAKRMEWAAFRQTVSEWEREQYLELY >gi|308151726|gb|GL476296.1| GENE 93 84938 - 85321 439 127 aa, chain - ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 112 123 144 67.0 5e-35 MREKELRRSMSVFPIGTVMKLTDLTARQIRYYEEQGLIHPERSEGNRRMYSLNDIDVLLE IKDYLSDGLNMAGIKRVYEMKLEEQKNTAEATRPLTDADVRQILYDEILSQGGLTQQNPF QSNVPRL >gi|308151726|gb|GL476296.1| GENE 94 85524 - 86765 580 413 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 390 30 406 425 228 38 1e-58 MTTHEKVILVGVETEKNYQTFSASMEELANLTETANGEVVFVLTQKRPQVDRQTVIGKGK LEELIQLTDAYEADIVIFNHELTPRQNQLLSEALAVRVIDRVQLILDIFALRARSKEGKL QVELAQLDYLLPRLAGQGKQLSRLGGGIGTRGPGETKLESDRRHIRNKILGIRRELKEVT AHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAGTYSEDQLFATLDPLTKKWQLP QGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHERTVQTLM KELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKISEDKERLVQAIRAQMMELLEP YQLEISPTDGQLLSELRRMTLMISEEYAENENRYIVKGFAKKKSKWLAESEKE >gi|308151726|gb|GL476296.1| GENE 95 86769 - 87698 830 309 aa, chain - ## HITS:1 COG:L15012 KEGG:ns NR:ns ## COG: L15012 COG0324 # Protein_GI_number: 15672608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Lactococcus lactis # 3 297 5 288 294 280 53.0 3e-75 MEKVLVIVGPTAVGKTALSIALAKKFNGEIISGDSMQVYRSLDIGTAKVTETEKEGIPHY LIDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSREIDD SPEIRETYNLFAEEKGNQALWQLLQQKDPLAANSIHFNNRKKVIRALEVFDKTGYSILTP KEKPARLYDYYLLGLETDRALLYERINQRVDQMMTEGLLEEAKQMFQQPHAQAAQGIGYK EFFPYFSGEQSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWNLVQQPTDLPKLEKEVA EWLQQKESE >gi|308151726|gb|GL476296.1| GENE 96 87699 - 88445 656 248 aa, chain - ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 247 34 281 281 223 45.0 3e-58 MTDIIAHRGSKGTHPENTCIAFREAVRVGAEGIELDVHLSKDGYLIVMHDETVDRTTDGH GEIQQLTLNELKQLDAGSWFQKNPSVQCVPTLEDVLNCLVEEQFNGFLNIELKTDIIHYE GIEKKVVQQMKQKKWPFRYLYSSFYFPSLVKLKKADPKTEIAFIYESAEDLSQAGPAFAL VDSLHPKMSWVLAHEKELIAIGKPLRPWTVNRMEEMENCFQLKLAGVHTDFPEEAKFARQ NWQEEGET >gi|308151726|gb|GL476296.1| GENE 97 88554 - 90365 967 603 aa, chain - ## HITS:1 COG:no KEGG:EF2164 NR:ns ## KEGG: EF2164 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 603 1 603 603 1060 97.0 0 MKVKLNKKKIFICSIIITFLVMLTLNNLTPLLADDYEYLYKTKSWMTILIDEYNQYMTWT GRSVVHIIARIFLLLPKGIFNVFNALAYTIVTYLVYRLTLQKQDEKYNSFRFIIIQVLFW LFTPAFGEVFLWETGSANYLWGSLIILSFLYVYHREIIEEHVFTKTKLMIFLMFALGILA GWCNENTSGGALLIVLGYLGWQFYTKRKLSLWMFTGVAGNAIGLALMALAPGNKIRATYF ARSTWSLPRKAMTGIITIFEQMKENLSLFLVILILLLVLYAYISQDKKRVYLSVVYFISG MATMLVLAISPAALDYGRSYYGAVLFLIIAFSMSLPNYKVNIRFSPIYSVLYVILACTFF MNVMVGVSDIFLSKLDLTKQYSYLVEQEKKGNINPVFPDISYSNTTKYSAYSNHLSHVKT NSDAQVNRSVAKYYGLESVRSVSEKDWDNIYRNGNPELMNIFNLNDYLQKLIDTQYTILL SGYGNQVYLSQAEESLLKDLGLGVKFEGNNAWTLSAVISKDNKTVETNAELSRLSGKFEA LNYDVFSSYTNYENQTFASVKINDTEMSRNKKGLNFVIIDNNTNKVIDSVNFDITEKNAP GMR >gi|308151726|gb|GL476296.1| GENE 98 90362 - 91327 956 321 aa, chain - ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 3 315 6 313 313 387 64.0 1e-107 MRNFLITGGAGFIGSTLANYYSKDNQVVVIDDLSMGQTENLNTSENITFIEGSVTDQQLM EKVLREYQFDYIFHLAAIASVADSVARPVETHQVNFESVLQLLELIRKYQKDLKRLVFAS SAAVYGDEPTLPKQEESVIRPLTPYAVDKFASEKYVLNYCHLYDVPTSAVRFFNVYGPNQ NPNSPYSGVISIVMDSYKRLLANQEVTFNIFGDGKQSRDFVFVEDVVQALNLVAHSDQSL GEVYNVGTGKATDLNELISSLNDIMKVTLPVEYKEARAGDIKDSLADISKLRAIGYEPKY SIQSGLDKYVNYELKAEGKQR >gi|308151726|gb|GL476296.1| GENE 99 91429 - 92850 846 473 aa, chain - ## HITS:1 COG:no KEGG:EF2166 NR:ns ## KEGG: EF2166 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 769 97.0 0 MNEKAKSVVKNLYYTVAANFATLGISVLLNLFVPKLLGVREYSYWQLYVFYASYVGFFHL GWIDGIYLKIGGEEYENLDKRNLGSQFWYLAIFECCISAFVILWAYFFMPKEYQGIILIL TAIVSVITIAKTFILYVFQSTNRIKEYAQLSRNDRYLYVLFIAIYFALGGRDFYWLIIMD ILSKLIITVWGMFRVKDMLRVNMMNLKEVTPEIVDNINIGSKLMLSSIASMLIMGTIRFF VQQRWTIETFGKLSFTLSLSNMFLTFINAVGIVMFPLLRRTNKERLPSLFVTLRGVFVPL TYAILLLYVPVKFVLGMWLPEYSESLKFMGILFPIVIYEGRMSLLINTYLKTLRKEKTIL FVNVLTLALSLILSLFVIFVVGNLNLTVGLILVSLAFRCNLAEIFLCKDMNVKIGNSTVL ETLVTLLFIFSNLWFGGSLYSFISYGIVYIIYFLFIHKSFVNNAKNLKYLVKG >gi|308151726|gb|GL476296.1| GENE 100 92921 - 93838 514 305 aa, chain - ## HITS:1 COG:no KEGG:Avi_3137 NR:ns ## KEGG: Avi_3137 # Name: not_defined # Def: hypothetical protein # Organism: A.vitis # Pathway: not_defined # 83 295 88 310 330 96 30.0 2e-18 MDYTRMMIITLDEKSVLFSTDAQKLGVHVEKYFSKRPFVVKLLNQLDKRIDTTFARFFYG EWKKNLSKIDFILLNSHYFSRPLIKYLNRKYPYIRIAIWYSNPVEKDTPISYYADLNCEL WSFDIGDCEKYQMHFNNQFIDETKVVAGQADSKYQSDVCFIGVDKQRLSYLLELEAYFVE CNLNPFIYVVDSSKNSYSNYDYKKPIPYSELIKYEANTSAILDVVQENQHGISLRPLEAL FLNKKLITNNRTVLNMDFYEKENVFLLNGQNMSEILTFLKVPMKPVSETVKEKYSFKGWL NNFFI >gi|308151726|gb|GL476296.1| GENE 101 93861 - 94685 544 274 aa, chain - ## HITS:1 COG:L15884 KEGG:ns NR:ns ## COG: L15884 COG3475 # Protein_GI_number: 15672196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Lactococcus lactis # 1 274 1 273 278 165 39.0 8e-41 MKPLTIKEIQETSTEILVYIDNICRQNNIEYSIYYGSLIGVERHQGYIPWDDDLDIVLTR PNYDRLINILSKDKNYLLLSLETRKNYRYTFAKLVDTRTCVKSKQFYNSEDPELGVFVDI FPIDGFPATSSERLDFGRQCELYRENMLATLNNSYAISKSRWKAYLKRVFLYPRYRKLLK QGDYDFWKRKFMDKVTTYPIESSIECGYIEFINEEWGVFPKEWFDHYEDVLFAGNKVRAI KDRKLFLSLRYGNYMELPPISEQVTHHPYTFYWK >gi|308151726|gb|GL476296.1| GENE 102 94688 - 96082 514 464 aa, chain - ## HITS:1 COG:no KEGG:EF2169 NR:ns ## KEGG: EF2169 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 458 6 460 467 292 37.0 2e-77 MWVNNFLEKTKLPFLIIFEFMLLLRTISLYSLLPSKVDTLVFGLISIWAMVYILNQMFFI LKNKRFKQFDPMLVIFIVMLFFVTLIHYQTYFIANLKLVIWQAIFLLVIYQIGKEQDKKT FKVLEKILLIVWGFLVVIAICMFFIQYSYTAPLDKIYNGLRIGFFENRLYGVFADPNFAA TISVVSMILSVSLLFQTTLKKWKWLLIMNTLIQWIYITLSGSRTAFVELMVIIFVGSFFV VYQKTTEKKLGLQLLYSIITSIGMVFFAYIATKLIERGMLAILDLLNNVEYKSTTNVSKN SPDVSLDRPDVENKTDISNNRFGLWKSSFEIFQSNIWFGTSPRNLVTYAQHYLPNTLIAV KQQTSHNFFFYTLATTGLAGTIPLILFLINKILTTLQVLFSKRINIFNDNFLRNVLIVLT ILVSAMFLTELILVNKIGTFLFWLYLGSVSSQLVKNNNKFLFWR >gi|308151726|gb|GL476296.1| GENE 103 96098 - 97078 900 326 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 322 6 326 328 229 40.0 4e-60 MPKISIIVPVYNVEKYLEKCVRSILAQTFTDFELILVDDGSPDSSGAMCDQFAEQDQRVK VIHKENGGLSDARNAGIELATGEYLGFVDSDDYIADDMYELLYTNIVKEDADLSICGIYD VYEGKEPVEKQQQYIVLDKVAAMKMILEAKVVSVHAVNKLYKKEIFEDIRYPVGMITEDG AVILSILEHTEKIVIDTQQKYYYFHRANSISSNLFSKKDLDTINVWKENEKYILDRYPEL SNVVHTRVCWANFIVLDKMMNSKLNNEEKKIQKEIVTFLRKNFKFIMKNQYFTMPRKVGA IALQIGVPYYKMIAILEEKHRKTKNE >gi|308151726|gb|GL476296.1| GENE 104 97080 - 98138 1057 352 aa, chain - ## HITS:1 COG:SMb20239 KEGG:ns NR:ns ## COG: SMb20239 COG0451 # Protein_GI_number: 16263977 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 28 344 11 314 346 132 30.0 1e-30 MLFTDDNYLSDVERVLEKTPDWTKVTNKSVFITGASGMIGTFLIDVLMYQNKTRNANISI WAMGRTLSRLEERFTSYLEDPLFHIVIGDVTEEIQIAEACDYVLHCASNTHPKSYASDPI GTIMTNIAGTQHILDYAVKANSEKVLFLSTVEIYGENRGDLDKFTEDYCGYIDCNTLRAG YPEGKRASESLCQAYIQKYGIDVVIPRISRTFGPTMLLSDSKASSQFIMNAVHKENIVLK SAGTQLYSYAYVADIVSALLFLLVKGQKGEAYNVSNEHCDITLRTFAETLANVAGTKVIH GEATAQEKQGFSKATKALLDNQKIYALGWRPLYDSMEEPLKHTIKILEGSGN >gi|308151726|gb|GL476296.1| GENE 105 98152 - 98856 209 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 4 234 6 228 234 85 27 1e-15 MITALIIAGGVGKRMGQEIPKQFIMVEEKPIIIYTLESFQKHPLIDRILVVCKKGWEQTL DAYAKEYHIDKLQWIIPGGNSGQESINNGVNFLKEHSNPEDTIVIHDGIRPLVDELVLSD VIVKCQEYGNAVTSLPYNEQIFVKETEETTRQYINRETLRRVSTPQAYKFEKLTWAYEKA FRENIGISESSYTNTMMVDLGETLYFALGSDKNIKLTTQDDLQLFKGFLKMKEE Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:34:56 2011 Seq name: gi|308151725|gb|GL476297.1| Enterococcus faecalis TX4000 genomic scaffold Scfld182, whole genome shotgun sequence Length of sequence - 146685 bp Number of predicted genes - 148, with homology - 143 Number of transcription units - 74, operones - 43 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 312 - 360 -0.1 1 1 Tu 1 . - CDS 471 - 581 122 ## - Prom 825 - 884 11.2 - TRNA 743 - 815 81.5 # Lys CTT 0 0 + Prom 796 - 855 6.1 2 2 Op 1 . + CDS 892 - 1122 201 ## EF0480 excisionase, putative 3 2 Op 2 . + CDS 1166 - 2335 878 ## COG0582 Integrase + Term 2392 - 2443 4.1 4 3 Op 1 . - CDS 2634 - 2771 228 ## EF0477 hypothetical protein 5 3 Op 2 22/0.000 - CDS 2778 - 4928 2374 ## COG0370 Fe2+ transport system protein B 6 3 Op 3 . - CDS 4925 - 5398 580 ## COG1918 Fe2+ transport system protein A - Prom 5580 - 5639 8.1 + Prom 5647 - 5706 7.1 7 4 Op 1 11/0.000 + CDS 5901 - 6125 361 ## COG0695 Glutaredoxin and related proteins 8 4 Op 2 18/0.000 + CDS 6127 - 6504 257 ## COG1780 Protein involved in ribonucleotide reduction 9 4 Op 3 24/0.000 + CDS 6485 - 8644 2235 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 8660 - 8696 3.3 + Prom 8679 - 8738 4.7 10 4 Op 4 . + CDS 8845 - 9810 1068 ## COG0208 Ribonucleotide reductase, beta subunit + Term 9817 - 9854 6.0 - Term 9797 - 9847 13.1 11 5 Op 1 8/0.000 - CDS 9850 - 11136 1119 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 12 5 Op 2 . - CDS 11181 - 11750 725 ## COG1704 Uncharacterized conserved protein - Prom 11779 - 11838 5.9 - Term 11932 - 11985 8.4 13 6 Op 1 . - CDS 12051 - 12752 1057 ## COG1285 Uncharacterized membrane protein - Prom 12774 - 12833 7.0 - Term 12779 - 12839 20.1 14 6 Op 2 . - CDS 12848 - 13549 1127 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 13581 - 13640 9.9 - Term 13616 - 13662 5.4 15 7 Op 1 . - CDS 13679 - 14887 1428 ## COG1316 Transcriptional regulator - Prom 14966 - 15025 5.6 16 7 Op 2 . - CDS 15037 - 16017 1043 ## COG0253 Diaminopimelate epimerase - Prom 16128 - 16187 8.0 - Term 16104 - 16143 8.6 17 8 Tu 1 . - CDS 16207 - 16815 755 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 16863 - 16922 5.8 + Prom 16798 - 16857 7.4 18 9 Tu 1 . + CDS 17009 - 17818 868 ## EF0462 hypothetical protein + Term 17823 - 17857 6.2 - Term 17811 - 17845 6.2 19 10 Op 1 . - CDS 17852 - 18271 539 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 20 10 Op 2 . - CDS 18281 - 19270 971 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 21 10 Op 3 2/0.036 - CDS 19283 - 20173 1060 ## COG2103 Predicted sugar phosphate isomerase 22 10 Op 4 . - CDS 20188 - 21039 585 ## COG1737 Transcriptional regulators 23 10 Op 5 1/0.071 - CDS 21056 - 21532 704 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 24 10 Op 6 . - CDS 21563 - 21859 427 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 25 10 Op 7 13/0.000 - CDS 21867 - 22382 604 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 26 10 Op 8 . - CDS 22375 - 23178 1140 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC - Prom 23215 - 23274 6.9 + Prom 23175 - 23234 8.8 27 11 Tu 1 . + CDS 23339 - 24118 542 ## COG0730 Predicted permeases + Term 24123 - 24167 2.1 - Term 24111 - 24153 5.5 28 12 Tu 1 . - CDS 24162 - 24563 585 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 24618 - 24677 8.2 + Prom 24673 - 24732 6.3 29 13 Tu 1 . + CDS 24784 - 26310 1514 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 26426 - 26470 7.4 + Prom 26476 - 26535 7.2 30 14 Tu 1 . + CDS 26562 - 27260 703 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 27265 - 27317 13.1 - Term 27244 - 27315 9.4 31 15 Op 1 3/0.000 - CDS 27317 - 28420 1198 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 32 15 Op 2 15/0.000 - CDS 28421 - 29245 709 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 33 15 Op 3 10/0.000 - CDS 29233 - 30966 1619 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 34 15 Op 4 . - CDS 30966 - 32333 1532 ## COG1169 Isochorismate synthase 35 15 Op 5 2/0.036 - CDS 32330 - 33787 1233 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 36 15 Op 6 . - CDS 33792 - 34607 1058 ## COG0447 Dihydroxynaphthoic acid synthase - Prom 34676 - 34735 7.0 + Prom 34680 - 34739 11.4 37 16 Tu 1 . + CDS 34862 - 35152 231 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Term 35124 - 35176 6.0 38 17 Tu 1 . - CDS 35222 - 35821 874 ## EF0443 LysM domain-containing protein - Prom 36013 - 36072 7.0 + Prom 36214 - 36273 13.8 39 18 Op 1 . + CDS 36327 - 36437 68 ## + Prom 36443 - 36502 4.1 40 18 Op 2 . + CDS 36572 - 36646 60 ## 41 18 Op 3 . + CDS 36639 - 38120 1513 ## COG3104 Dipeptide/tripeptide permease + Term 38133 - 38172 5.2 + Prom 38129 - 38188 5.5 42 19 Tu 1 . + CDS 38227 - 38427 354 ## EF0439 immunity protein PlnM, putative + Term 38428 - 38463 -0.5 - Term 38451 - 38496 6.2 43 20 Op 1 . - CDS 38511 - 39347 809 ## COG1082 Sugar phosphate isomerases/epimerases 44 20 Op 2 . - CDS 39349 - 40269 802 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 40302 - 40361 3.9 45 21 Op 1 4/0.000 - CDS 40479 - 40769 326 ## COG3254 Uncharacterized conserved protein 46 21 Op 2 5/0.000 - CDS 40787 - 41635 1096 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 47 21 Op 3 6/0.000 - CDS 41663 - 42949 1632 ## COG4806 L-rhamnose isomerase 48 21 Op 4 . - CDS 42946 - 44448 1459 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 44472 - 44531 8.8 + Prom 44417 - 44476 7.7 49 22 Op 1 . + CDS 44577 - 45017 373 ## EF0432 AraC family transcriptional regulator 50 22 Op 2 . + CDS 45093 - 45449 311 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 45454 - 45497 8.2 - Term 45442 - 45484 9.6 51 23 Op 1 11/0.000 - CDS 45597 - 46892 1089 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 52 23 Op 2 . - CDS 46928 - 47209 145 ## PROTEIN SUPPORTED gi|239995925|ref|ZP_04716449.1| ribosomal protein S3 53 23 Op 3 11/0.000 - CDS 47194 - 47403 117 ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3 54 23 Op 4 . - CDS 47418 - 48428 591 ## PROTEIN SUPPORTED gi|90020579|ref|YP_526406.1| ribosomal protein L22 55 23 Op 5 1/0.071 - CDS 48446 - 49552 1292 ## COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - Prom 49635 - 49694 4.0 - Term 49719 - 49777 17.1 56 24 Op 1 9/0.000 - CDS 49782 - 50570 200 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 57 24 Op 2 . - CDS 50592 - 51431 992 ## COG3717 5-keto 4-deoxyuronate isomerase 58 24 Op 3 8/0.000 - CDS 51444 - 52451 1050 ## COG0524 Sugar kinases, ribokinase family 59 24 Op 4 1/0.071 - CDS 52456 - 53103 917 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Prom 53156 - 53215 17.0 - Term 53196 - 53261 18.7 60 25 Op 1 . - CDS 53264 - 54016 891 ## COG1414 Transcriptional regulator - Prom 54036 - 54095 7.0 61 25 Op 2 . - CDS 54147 - 54614 525 ## EF0421 MerR family transcriptional regulator - Prom 54683 - 54742 8.9 + Prom 54656 - 54715 6.5 62 26 Op 1 . + CDS 54757 - 56232 1748 ## COG0477 Permeases of the major facilitator superfamily 63 26 Op 2 . + CDS 56232 - 56936 710 ## EF0419 hypothetical protein - Term 56931 - 56984 5.3 64 27 Op 1 36/0.000 - CDS 56991 - 58220 276 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 65 27 Op 2 24/0.000 - CDS 58217 - 58924 263 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 66 27 Op 3 . - CDS 58937 - 60091 1416 ## COG0845 Membrane-fusion protein - Prom 60339 - 60398 10.2 + Prom 60220 - 60279 8.8 67 28 Op 1 . + CDS 60436 - 61074 459 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 61090 - 61122 1.1 68 28 Op 2 . + CDS 61153 - 62268 995 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 62288 - 62339 -0.9 - Term 62233 - 62290 10.6 69 29 Op 1 15/0.000 - CDS 62335 - 63489 1556 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 70 29 Op 2 . - CDS 63504 - 63941 636 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 71 29 Op 3 . - CDS 63956 - 65728 2158 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 65900 - 65959 5.9 72 30 Tu 1 . + CDS 65974 - 66069 149 ## + Term 66111 - 66146 4.3 - Term 66090 - 66145 6.1 73 31 Op 1 5/0.000 - CDS 66339 - 66773 455 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 74 31 Op 2 4/0.000 - CDS 66784 - 68817 1855 ## COG3711 Transcriptional antiterminator 75 31 Op 3 . - CDS 68808 - 70550 1453 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 70598 - 70657 6.1 + Prom 70587 - 70646 11.4 76 32 Tu 1 . + CDS 70734 - 71567 621 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 71467 - 71508 -0.6 77 33 Op 1 1/0.071 - CDS 71619 - 72254 821 ## COG0778 Nitroreductase 78 33 Op 2 . - CDS 72259 - 72693 518 ## COG1846 Transcriptional regulators - Prom 72731 - 72790 4.2 - Term 72773 - 72833 10.1 79 34 Tu 1 . - CDS 72845 - 74248 1689 ## COG1757 Na+/H+ antiporter - Term 74587 - 74623 -0.8 80 35 Op 1 3/0.000 - CDS 74838 - 75479 874 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 81 35 Op 2 6/0.000 - CDS 75495 - 76439 1226 ## COG3817 Predicted membrane protein 82 35 Op 3 . - CDS 76436 - 77122 806 ## COG3819 Predicted membrane protein 83 35 Op 4 . - CDS 77137 - 77238 80 ## - Prom 77471 - 77530 9.7 + Prom 77177 - 77236 5.7 84 36 Op 1 . + CDS 77315 - 77830 459 ## EF0397 hypothetical protein 85 36 Op 2 . + CDS 77846 - 79030 1259 ## COG0628 Predicted permease + Term 79036 - 79101 11.2 - Term 79032 - 79076 11.5 86 37 Tu 1 . - CDS 79082 - 80209 1408 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 80230 - 80289 10.3 - Term 80556 - 80591 5.1 87 38 Tu 1 . - CDS 80617 - 81984 1715 ## COG3883 Uncharacterized protein conserved in bacteria 88 39 Tu 1 . - CDS 82441 - 84735 1464 ## EF0392 hypothetical protein - Prom 84966 - 85025 7.9 - Term 85121 - 85169 13.6 89 40 Op 1 . - CDS 85185 - 86408 1910 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 90 40 Op 2 . - CDS 86433 - 87788 1840 ## EF0389 hypothetical protein - Term 87801 - 87853 1.1 91 40 Op 3 . - CDS 87854 - 88915 1370 ## COG2055 Malate/L-lactate dehydrogenases - Prom 88943 - 89002 1.6 92 41 Op 1 . - CDS 89005 - 90225 1183 ## COG1301 Na+/H+-dicarboxylate symporters 93 41 Op 2 1/0.071 - CDS 90232 - 91170 1303 ## COG0549 Carbamate kinase - Prom 91220 - 91279 2.2 94 42 Op 1 . - CDS 91305 - 92558 1653 ## COG0477 Permeases of the major facilitator superfamily 95 42 Op 2 . - CDS 92568 - 93401 610 ## EF0384 hypothetical protein 96 42 Op 3 . - CDS 93394 - 96405 3871 ## COG0074 Succinyl-CoA synthetase, alpha subunit - Prom 96468 - 96527 6.7 + Prom 96443 - 96502 6.1 97 43 Op 1 . + CDS 96528 - 98120 1084 ## COG2508 Regulator of polyketide synthase expression 98 43 Op 2 . + CDS 98095 - 98907 735 ## COG0657 Esterase/lipase + Term 98911 - 98962 16.2 - Term 98902 - 98945 11.9 99 44 Op 1 . - CDS 98946 - 100157 1440 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 100 44 Op 2 . - CDS 100209 - 101012 964 ## COG0666 FOG: Ankyrin repeat - Prom 101060 - 101119 4.9 - Term 101122 - 101167 7.1 101 45 Op 1 . - CDS 101186 - 101305 116 ## EF0376 hypothetical protein 102 45 Op 2 . - CDS 101384 - 102229 808 ## EF0376 hypothetical protein - Prom 102345 - 102404 13.3 - Term 102381 - 102420 6.2 103 46 Tu 1 . - CDS 102448 - 103413 1103 ## EF0375 hypothetical protein - Prom 103503 - 103562 7.8 - Term 103524 - 103578 14.6 104 47 Tu 1 . - CDS 103598 - 104575 1317 ## EF0374 putative lipoprotein - Prom 104649 - 104708 9.0 + Prom 104556 - 104615 11.0 105 48 Op 1 40/0.000 + CDS 104761 - 106242 1635 ## COG0642 Signal transduction histidine kinase 106 48 Op 2 . + CDS 106239 - 106931 717 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 106944 - 106987 7.2 - Term 106925 - 106982 15.3 107 49 Op 1 3/0.000 - CDS 106983 - 108128 1208 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 108153 - 108212 6.0 - Term 108198 - 108237 8.4 108 49 Op 2 . - CDS 108254 - 109990 2141 ## COG4477 Negative regulator of septation ring formation - Prom 110101 - 110160 8.3 109 50 Tu 1 . - CDS 110176 - 110862 862 ## COG0637 Predicted phosphatase/phosphohexomutase - Prom 110892 - 110951 8.0 + Prom 110959 - 111018 5.3 110 51 Tu 1 . + CDS 111049 - 112401 1525 ## COG0527 Aspartokinases + Term 112409 - 112444 6.0 111 52 Op 1 . - CDS 112424 - 112960 609 ## COG4696 Uncharacterized protein conserved in bacteria 112 52 Op 2 . - CDS 112977 - 113810 810 ## COG1801 Uncharacterized conserved protein 113 52 Op 3 . - CDS 113861 - 114595 898 ## COG3884 Acyl-ACP thioesterase - Prom 114642 - 114701 8.1 + Prom 114720 - 114779 7.8 114 53 Op 1 1/0.071 + CDS 114870 - 115454 770 ## COG3397 Uncharacterized protein conserved in bacteria 115 53 Op 2 . + CDS 115497 - 116543 1132 ## COG3469 Chitinase + Term 116554 - 116596 5.0 116 54 Op 1 12/0.000 - CDS 116639 - 116950 574 ## COG2076 Membrane transporters of cations and cationic drugs 117 54 Op 2 . - CDS 116947 - 117282 406 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 117412 - 117471 7.8 + Prom 117459 - 117518 8.5 118 55 Op 1 4/0.000 + CDS 117565 - 118539 1248 ## COG0346 Lactoylglutathione lyase and related lyases 119 55 Op 2 . + CDS 118561 - 119181 663 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family + Term 119214 - 119245 3.5 - Term 119175 - 119234 19.1 120 56 Tu 1 . - CDS 119248 - 120576 1422 ## COG3579 Aminopeptidase C - Prom 120675 - 120734 6.5 + Prom 120641 - 120700 6.4 121 57 Op 1 . + CDS 120726 - 121115 437 ## COG1725 Predicted transcriptional regulators 122 57 Op 2 . + CDS 121115 - 122485 1036 ## EF0300 hypothetical protein + Term 122486 - 122541 13.1 - Term 122480 - 122521 8.2 123 58 Op 1 . - CDS 122530 - 122736 299 ## EF0299 copper transport protein CopZ 124 58 Op 2 1/0.071 - CDS 122758 - 125244 3288 ## COG2217 Cation transport ATPase 125 58 Op 3 . - CDS 125260 - 125700 423 ## COG3682 Predicted transcriptional regulator - Prom 125768 - 125827 5.2 - Term 125722 - 125779 3.6 126 59 Op 1 . - CDS 125829 - 126992 1460 ## COG0475 Kef-type K+ transport systems, membrane components 127 59 Op 2 . - CDS 127013 - 128380 1069 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 128450 - 128509 2.1 128 60 Tu 1 . - CDS 128512 - 129054 507 ## COG0262 Dihydrofolate reductase - Prom 129202 - 129261 10.5 + Prom 129219 - 129278 8.8 129 61 Tu 1 . + CDS 129301 - 130029 666 ## COG1737 Transcriptional regulators + Term 130071 - 130123 18.3 + Prom 130149 - 130208 4.0 130 62 Op 1 8/0.000 + CDS 130236 - 131570 1231 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 131 62 Op 2 . + CDS 131597 - 133027 1439 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 133029 - 133074 13.7 - Term 133016 - 133062 10.1 132 63 Op 1 8/0.000 - CDS 133064 - 134200 1590 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 133 63 Op 2 . - CDS 134214 - 135131 1087 ## COG0031 Cysteine synthase - Prom 135153 - 135212 3.5 - Term 135154 - 135199 10.6 134 64 Tu 1 . - CDS 135221 - 135358 204 ## EF0288 hypothetical protein - Prom 135385 - 135444 4.5 - Term 135475 - 135522 12.5 135 65 Tu 1 . - CDS 135527 - 136087 837 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 136116 - 136175 5.0 + Prom 136199 - 136258 6.3 136 66 Tu 1 . + CDS 136442 - 137089 724 ## EF0286 fibronectin-binding protein, putative + Term 137097 - 137131 6.2 - Term 137085 - 137119 6.2 137 67 Tu 1 . - CDS 137131 - 138066 1122 ## COG0167 Dihydroorotate dehydrogenase - Prom 138124 - 138183 12.9 - Term 138161 - 138211 7.2 138 68 Op 1 8/0.000 - CDS 138244 - 138678 713 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 139 68 Op 2 . - CDS 138680 - 139918 1522 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Prom 140129 - 140188 7.8 140 69 Tu 1 . + CDS 140216 - 140968 1026 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 141008 - 141064 7.4 141 70 Op 1 . - CDS 141067 - 141465 383 ## EF0281 hypothetical protein 142 70 Op 2 . - CDS 141510 - 142445 1204 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 142496 - 142555 5.1 143 71 Op 1 . - CDS 142588 - 143262 834 ## COG1418 Predicted HD superfamily hydrolase 144 71 Op 2 . - CDS 143275 - 143787 255 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 145 71 Op 3 . - CDS 143800 - 144291 530 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 144317 - 144376 2.6 + Prom 144301 - 144360 6.2 146 72 Tu 1 . + CDS 144430 - 144996 322 ## COG2169 Adenosine deaminase + Term 145026 - 145070 1.7 - Term 144967 - 145010 6.9 147 73 Tu 1 . - CDS 145014 - 145757 600 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 145786 - 145845 9.6 - Term 145813 - 145868 16.8 148 74 Tu 1 . - CDS 145979 - 146221 89 ## gi|307292471|ref|ZP_07572321.1| hypothetical protein HMPREF9509_02758 - Prom 146241 - 146300 4.5 Predicted protein(s) >gi|308151725|gb|GL476297.1| GENE 1 471 - 581 122 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNEIANITIIRETLQNYTANEISKHTGLNLSTIKN >gi|308151725|gb|GL476297.1| GENE 2 892 - 1122 201 76 aa, chain + ## HITS:1 COG:no KEGG:EF0480 NR:ns ## KEGG: EF0480 # Name: not_defined # Def: excisionase, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 119 98.0 3e-26 MDFQDYEKIFESYPSILKITDLTKMLNIGKNKAYNLLKDKSIENIKIGARYKIPKKAVIE YILKIQDEGKNHVIIE >gi|308151725|gb|GL476297.1| GENE 3 1166 - 2335 878 389 aa, chain + ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 139 385 147 388 399 120 31.0 5e-27 MKLRANIIEKRGTLQVIVSYKDSNGKIRQKWKDTKLKKKGNKKRAEKIRDEFLLELESQL AMECECANPDLLFYDYLLNYLEVSKKQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKP YHLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQV YNQHEILKLLDILSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENP ENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTM EDGRLMKPQYVTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYS TTANLYTHLTAGVKERAAEALENAFGFKE >gi|308151725|gb|GL476297.1| GENE 4 2634 - 2771 228 45 aa, chain - ## HITS:1 COG:no KEGG:EF0477 NR:ns ## KEGG: EF0477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 75 100.0 6e-13 MATIILSILIFGTAGIITYRRIKKGESCEDCQTACPVKKEQSSQE >gi|308151725|gb|GL476297.1| GENE 5 2778 - 4928 2374 716 aa, chain - ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 816 56.0 0 MTQQIALAGNPNSGKTTTFNMLTGANQYVGNWPGVTVERKEGVAKKDKTLIIQDLPGIYS LSPYTPEEIVARDYLLEDQPSVILNILDVTNLERNLYLTTQLIETGLPVVCALNMMDLLE KNGQTLNSEKLSYGLGVPVVEISALKNRGLDHALKQSKQRANAIETEVIYPSYDNRLEAA LAEIVDILGNTVPETQQRWYSLKLFERDVRTKEQLLLSSFQEKEIEEVIQITEKIFQDES EAIIINERYAFIARLIALCATKKTEMTFTHSDKIDRVVTNRWLALPIFAFVMWLVYYLSI QTVGTMGTDWLNDVFFGEWVPQFVGNWLAQWQVAPWMQSLILDGIIAGVGAVLGFLPQLA VLFLCLGFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENER DRRMTIMVTTFMPCSAKLPIIALIAGAFFPNQSWVSPSAYFLGVASIVLSGIALKKTKHF LGDPAPFIMELPAYHLPQLRSVVRHAYERCRSFVKKAGTIIFVSSILIWFMSHYSVTFQP VPESQSILAFLGKGLAVLFIPLGWGNWQGAVATITGLIAKENIIGTLGILFGNVKDVSEN GVEVWGALQHTFTPVAAYSFLTFNLLCAPCFAAIGAIRREMGDLKWTLGAIGYQCGLAYM VSFVIYQLGHVLVEKGTLTLGTFLAMGVVLAGFYFLIRKPKPGKESVQAITSLERG >gi|308151725|gb|GL476297.1| GENE 6 4925 - 5398 580 157 aa, chain - ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 1 151 1 148 152 102 36.0 4e-22 MITLAQAEVGKVYTVESVQADVQTKKHLNNLGVVAGQAVVLVNYQNQNGIVLLHNSRIAL TDTILQAIHVEERSANEKVWVSLDTLKVGERATIVGIHGQGAVKRRLMDMGLTKGTVIFI RKVAPLADPIEINVRGYELTLRKSEAELILVEKEESE >gi|308151725|gb|GL476297.1| GENE 7 5901 - 6125 361 74 aa, chain + ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 73 2 72 72 85 53.0 2e-17 MNVKIFSKNNCIQCKMAKRFLSENNIAFEEINIDAQPDAIDWLKEQGFQSVPVITSEATT VVGFRPDQLKQLAS >gi|308151725|gb|GL476297.1| GENE 8 6127 - 6504 257 125 aa, chain + ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 1 121 1 129 140 112 43.0 1e-25 MKLVYFSVTGQTRRFIKKLDLPAYELEPANPFFEINEPFILVIPTYDAEITEVVNDFLDY KSNQELLVGVAGGGNRNFAELFVYTAKDIARDYHVPLLYSFEFSGTDEDVETFKKVVEEI ESKRN >gi|308151725|gb|GL476297.1| GENE 9 6485 - 8644 2235 719 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 719 1 719 719 1145 77.0 0 MSLKEIKDVSYFKLNNEINRPVDGQIPLNKDKEALAAFFKENVEPNTRKFSSAEEKINFL MKEDFIETEFIKKYSMDFIEKLYAFLDEQHFQFKSFMAAYKFYSQYALKNNAGTEYLETY EDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDD MNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSN QLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDM YLFSPYSVEREYGVPYSYVDITKEYDNLVANPNIRKRKIKARDLENEISKLQQESGYPYI INIDTANKNNPIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLM ESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYG SEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKF DKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRM IEERQEKKIGKIYYPAPYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMR SEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRTFTDDAEEIGSNQCESCVI >gi|308151725|gb|GL476297.1| GENE 10 8845 - 9810 1068 321 aa, chain + ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 319 1 319 320 529 85.0 1e-150 MATYYEAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRTLSDLEKTTVGYVFG GLTLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDI FEWTNTNKHLQYKAERINEIYKNGTPLEKKIASVFLETFLFYSGFYTPLYYLGNNKLANV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELY DDLGWTEEVKTFLRYNANKALMNLGMDPLFADTANDVNPIVMNGISTGTSNHDFFSQVGN GYLLGTVEAMKDDDYLYGLDK >gi|308151725|gb|GL476297.1| GENE 11 9850 - 11136 1119 428 aa, chain - ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 118 308 28 223 253 90 30.0 4e-18 MDKKVEKIQEKVRLFYKKHQRNTTIVVVISLSMILILGMAAWYEGKGISYEAKQTALREK QHALQKKRDDILAGKMTEASTQTTINNFSKQEITGENELVTITGTNGQLNINDANIYVSD NAGIVSNQLKQKMFQLNQQLLENANGAQFMLITVPALPSGESVESYSNKIANQLGVGDRE KNNGVVFLMAIEDRESRLEVGYGLESILTDSYADDIINNEEVKEAFRDEDYNTGLNKIID QVSAAINSKTAQVDNELTNIQAELNTNTTKRNVLLMASIAGMLICAVYILQILRTRKLVK KMYQDYLNCLPTKAVLNNSEQTKKVLNKMKKTSFYCLYLNGATLFATKGKIRRATKRGSL LSIYPNAKKQSFGRLLVGDTLYSYDGSVLTYAYLNSQYNPSNHSSSGSGSGGSFGGGSFG GGGASGSW >gi|308151725|gb|GL476297.1| GENE 12 11181 - 11750 725 189 aa, chain - ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 188 32 193 193 138 46.0 6e-33 MNKKNKFLSIIVVVVVIIGAFVMKAYNQLITLDNKVEAEWSQVENVMQRRADLIPNLVSS VQGSMTQEKEVLKEITEARKAYAGAKSSSEKGQANEQIEKGLGNFVTVLNEDYPKLASSE NVKTLMTQLEGSENRISVERRNYIQAVETYNQQISKFPDKIIAKLLGFEKKTNYVATEQG KEVPQVKFK >gi|308151725|gb|GL476297.1| GENE 13 12051 - 12752 1057 233 aa, chain - ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 3 229 13 242 244 139 37.0 3e-33 MLQLTIPEIILRLVLAMVMGGAIGFERQYKNRPAGMRTHILVCMGAAIIALIQSQIAINA LKDALANPALTGVIRSDQARLIAQVVSGIGFLGAGTIIVTKQSVTGLTTAASLWTVAGLG IAVGMGYYTIALTSFIGVLFALTIVKRIIHVPTIKKLEIRYQHKQETKEFINQYFEEKHI EIYDVNFNVSWVDDTKIYTNIYTIDLPKGLTYADVIEDLSVSNNVTKLRLINV >gi|308151725|gb|GL476297.1| GENE 14 12848 - 13549 1127 233 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 4e-80 MQIIRVANAEEGGKKAFELIKEGMNNGAKVLGLATGSTPETLYKEMTASDVDFTEMTSVN LDEYVGLGGEDEQSYRYFMNKHLFDKKPFKETFVPNGKAEDLDAASAEYEKIIDAHPVDI QILGIGQNGHIGFNEPGTPLDSLTHVVELTESTINANKRYFDKVEDVPTRAVSMGIGSIM KGKKMILMAYGEAKAEAIKGMIDGPVTTDMPASALQNHQDVVVIIDDAAASKL >gi|308151725|gb|GL476297.1| GENE 15 13679 - 14887 1428 402 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 305 2 303 304 232 42.0 8e-61 MKLWKKVVLGFLSVLLVVVAGVCAYGIKMYSDANSTINGIYQSVNRKSNKGATANIDAQE PFSVLLMGIDTGDLGRTEQGRSDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLN HAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTLDGITV PAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKNVRKVMSFDGVSKYRKILDAV EANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLR KQLGLKEHASEREKDLAFYNQFSYAVTDTALIGESGDSSANSSTSSSSTADTTAGQTEYN GNTQQAAEGAYDPNTYVDPNTYTDPNAYADPNTYVDPNAPQY >gi|308151725|gb|GL476297.1| GENE 16 15037 - 16017 1043 326 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 3 325 4 323 329 279 46.0 6e-75 MNVMMQKVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGT HGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAE EVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFTAVAVPNPHLVAFVDHET LNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMCASS LLYTLLKDGVFYEKITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDLLNG AFEKITITETNEQKHYQEFLQTLSQK >gi|308151725|gb|GL476297.1| GENE 17 16207 - 16815 755 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 202 1 201 201 295 67 8e-79 MTYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKYPELGEKSVEDLISD MNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFK TAATGRFGSGWAWLVVNNGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPD YIEAFWNVVNWDKVNELFAAAK >gi|308151725|gb|GL476297.1| GENE 18 17009 - 17818 868 269 aa, chain + ## HITS:1 COG:no KEGG:EF0462 NR:ns ## KEGG: EF0462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 269 1 269 269 499 100.0 1e-140 MNTLQLFKQAFFSVSELRHAKKMAFWKVILYAVFLSAILALPITKQVFSVLQEVQQDGQK IAEKLPDFSIENGTLQTKAKESGFIYQTDSIIFTFDPDGKRTAADVQKDLIGNAFGLAFL QDEFVVALPNSGATESILGTDQFIFPYSKGTLDGVNAQSIKTALSEAAIPWWTKLIVFLV AIYPVLIGLVLDLLIAAIGASLYSKLRFYSLRLIDCLKIITYCATVPVILSAILNFVNPM FNDGILVILLSLFFFFVTTKNEPRNIPGS >gi|308151725|gb|GL476297.1| GENE 19 17852 - 18271 539 139 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 134 134 69 36.0 2e-12 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVP TLVLADLKGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVSPVENVDELAVYLTQIGQ SAVTTIDLPELTDEEEFEE >gi|308151725|gb|GL476297.1| GENE 20 18281 - 19270 971 329 aa, chain - ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 11 329 6 326 335 169 33.0 5e-42 MNQIAIQETIQRLINQQVVSGVAWGTITEDSLSEQYTGFLGNTSPFARQKVSSASLYDLA SLTKVIGTTNRMLQLIDTNQLTFSTTVGEILPDYQGLSCSIGELLLHQSGLPADVVDKKN VTKKSLQEIILTHSLSERGKTTYSDLGYYLLGEIIQVLDRCSLEESFQTYLFQPMNLQHT SFTVSDFAQAVPTEITKQRGVIQGVVHDSKAYQLKAPIGSAGLFAILPDLLTFVQCFMNN RYPTGKPLFSEKMFTALWSMNQGGRTFGWEVKKTQAGVDYLYHTGFTGTAIGMKKETKEA LILLTNRIHPTREERGFLKARTKIYQQYF >gi|308151725|gb|GL476297.1| GENE 21 19283 - 20173 1060 296 aa, chain - ## HITS:1 COG:BS_ybbI KEGG:ns NR:ns ## COG: BS_ybbI COG2103 # Protein_GI_number: 16077238 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Bacillus subtilis # 1 295 5 299 304 282 53.0 7e-76 MNLEGLTTEARNETTKKIDQVSTLEMVTLINQEDQKVAQAIEKVLPQIATAIDAAAERFK KGGRLIYCGAGTSGRLGALDAIELTPTYSVSPERAFGILAGGEKAMYQAIEGAEDSKELA IEDLTQHQLTARDVVIAIAASGRTPYAVSAIEYGKKVGALTISVTCNNQSPMNQLAEIGI APIVGPEVITGSTRMKAGSAQKMVLNMFSTGIMVKVGNIYQNLMVNVQPTNEKLIQRATN IIKEAAEIEESQAKEYLEAAQLEVAPAIVMAKAHVDFQKAKQLLAEHDGRISEVLA >gi|308151725|gb|GL476297.1| GENE 22 20188 - 21039 585 283 aa, chain - ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 283 1 283 283 124 28.0 2e-28 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVQSLSDEVLLVPNNEHLIRVGAI SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKEK >gi|308151725|gb|GL476297.1| GENE 23 21056 - 21532 704 158 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 148 6 151 162 141 54.0 4e-34 MTIVHARVDERLIHGQVATVWTNTVGAQRIMVVNDAAVKDQLQIGALKMAKPAGVKLSIL SKRKAIEKILAGNYDEEKVFLITKDIADMAALIDGGVPLQSFNVGNISQKEGSRAIKKSV ALTDEDIQTVRRLTDNGMTITAQMIPSEPNEAILTFIK >gi|308151725|gb|GL476297.1| GENE 24 21563 - 21859 427 98 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 2 88 186 272 275 73 47.0 1e-13 MFTQGVAILGLTVVGGLIPSVITYKLDLTYKMGDVTLSVQEMLDKILPALIPLGIVLLSY WLLGKKKMNSTRLIFVLILIGMVLGNLQPMLAWVGGLF >gi|308151725|gb|GL476297.1| GENE 25 21867 - 22382 604 171 aa, chain - ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 162 1 165 271 133 41.0 2e-31 MTNKLTKKDINKVYVRNLFGYQWGWNYEKMQGLGYAWVMMPALKRLYSEDPVAMKKALKT HLGFMNTTPAMSHLIVGADMALEEEVGIEDEMAITGLKTGLMGPFAGVGDTIFIAIYRAI VFSIAAYMAQGGQVVGLLIPLIAGAVVLWVRYKFTWIGYHQGKKNCDRICG >gi|308151725|gb|GL476297.1| GENE 26 22375 - 23178 1140 267 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 267 267 216 47.0 3e-56 MTVSIGIILILCLYTVVGVLDQISIQIGPYTPLFAATFTGLVLGDVQTGLMIGATLQLMT LGVATYGGATVPDFLSGAIMGTAYAIISGKGAEYGIGVAVPIGLLLTQLDILGRMANTFF QHKADRYAEEGNYKGVERCNVLGIFPWTISRVIPVFIGLAFGEQVVNAINNWIPIWVMNG LKAAGAILPAMGIAILMRYLPIKTYWPYFIIGFVLLAYGAQFFSVLGVALVGLALAAIYV MNHNKGGAATTSGTVIYEDDEEVEIDD >gi|308151725|gb|GL476297.1| GENE 27 23339 - 24118 542 259 aa, chain + ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 252 3 243 246 67 26.0 3e-11 MRVLLIYFITIFLSNTVGALSGMGGGVIIKPVLDFLGFHSLNSIAFYSSVAVFVMSISST YKQYQNGVQIEWKKAASISFGSLVGGMLGDLLLNQAIALAPNEEKVQLIQYIIMLLTLVL VLLYNQFSNWHLHLNGLSIFLIVGLGLGILSTFLGIGGGPINVACLILFFGMDIKSATVY SIITIFFSQLAKLGNIGLTTGFAVFDLTMLWAIIPAALFGGYVGGLFSKKLSQQRVAQIY SLVVFLVILLNMYNLWTVI >gi|308151725|gb|GL476297.1| GENE 28 24162 - 24563 585 133 aa, chain - ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 1 132 1 137 138 152 59.0 1e-37 MKKIYETTIINTGGRAGEVHSPDKSFSYAVASPGVKKENTTNPEQLFAAAYSACFNGALE LVMDQEKVEGKSTVTARVSLFQGEDGFSVGAELEVHIDGVDQAKAEELVKKAHEICPYSK ATRNNIDVKLTVI >gi|308151725|gb|GL476297.1| GENE 29 24784 - 26310 1514 508 aa, chain + ## HITS:1 COG:lin0373 KEGG:ns NR:ns ## COG: lin0373 COG0365 # Protein_GI_number: 16799450 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Listeria innocua # 7 507 6 508 508 644 59.0 0 MTHLLDYQPLNLYTNYQEAAEKTPTVPIIFDESLPAFPALGLETTYGESHQEILKRAYQL AALGVKKGDKIIIYKSPKFDTYLLAVAASYLAAVPVMVSYHLPFETIEVFVDRLEDPYIL FDDVTAEKVQAVRNSSANKKLSVASLLEADATEVPQDELTKDEIAYMTHTSGTTGIPKLI CHSNHSMGWRTKWQKTIFTKIAEKKLVGFHISPVHSRFNIGVSSLMAMGFPMMPLANASS EKVAEMFSTYQPIAVETHPNNFVQWVRLTKEKPEAFASVHYYHSTFDAINNATMVAFLKA SAANEPIFLQVYGQSECGPMILRAHTLESLKDSDARDMGVGLEDLTQARITDEKGQVLSA MTDGHIQFLSKGRALTYYKEDARFAENVYGEWWDSGDYGMLDERGHLFLKDRQVDLIENI DSNLAIEDHLLDALDFLEEVIIVRGKENEPQPILAVVPGEEMDWDAWWTQVADLPHLNEP IIMAFDEIPHTATMKVQRLQLEKWLKEQ >gi|308151725|gb|GL476297.1| GENE 30 26562 - 27260 703 232 aa, chain + ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 225 1 209 213 212 50.0 5e-55 MKILIKQDFDTMSEWAKMLLLSTMSQDKRVNLSITASKTPALVYQKLASIVKNSSDFDNV HYYNFDEIPVPHQKEGITLTDLRTLYLTPAEISEQNIHPLTVENFQQQEQRIADAGGLDL MLIGLGADGHFCGNMPTTTHFKNETYQVTVTGSEPWFVPEMMQPGMTFVTMGPASIMKVK HLVLIVNGEQKAQMVKQVLQGPVTETYPASILQLHPNLTVLLDEAAASQLEK >gi|308151725|gb|GL476297.1| GENE 31 27317 - 28420 1198 367 aa, chain - ## HITS:1 COG:lin2664 KEGG:ns NR:ns ## COG: lin2664 COG4948 # Protein_GI_number: 16801725 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 1 362 1 362 374 374 50.0 1e-103 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET LVTERFIIQQHLIPLLLTEALEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSL TEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGYDVEPVALIRQH FPNLSLMVDANSAYTLADLPQLQRLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDE NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRA LNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKY SQYQKIM >gi|308151725|gb|GL476297.1| GENE 32 28421 - 29245 709 274 aa, chain - ## HITS:1 COG:BS_ytxM KEGG:ns NR:ns ## COG: BS_ytxM COG0596 # Protein_GI_number: 16080133 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 25 270 27 271 274 191 40.0 9e-49 MERLIRGMQYHYQWLTPFDAKRTTVVCLHGFTGTLATFAAVFPSQTPYNVLGIDLPGHGA TASLVAPERYTMKQVCHDLAELTESLNLPCFCLLGYSMGARTALGFALHYPQKVQHLLLE SGSPGLTTAAERQARICQDHRLAERILEEPLVDFIDFWQELPLFQTQKALSVAQQMAIRQ ERLSQSAFGLASSLWYMGTGAQESYWERLVELQPIPTDLLVGGEDQKFIGIAKKMQARQP LLRLTIFPEAGHCIHLEQPTIFYEKVTALLEGAV >gi|308151725|gb|GL476297.1| GENE 33 29233 - 30966 1619 577 aa, chain - ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 2 565 3 573 580 506 45.0 1e-143 MNHQETMTDYLTAFIEGLKNSGVEQAVISPGSRSTPLALLLHRETAIQTFVDVDERSAAF FALGLSKASQKPVVLLCTSGTAAANYYPAICEANISHVPLVVLTTDRPHELRQVGAPQAM DQLQMYQNHVKLFVEMALPEATEEMLNYAYWQGAKGAAFAQQTPAAPVHLNFPLREPLLP DLERKTKSSQQTALFAGQSILSTEQVQQLADQWYQKNGVLVVGGSHTEEEAALFIQLAEA LQWPLLADPLANIVTHGQNSEVVIAHSDLFLNVATLPQEPEVVVRFGSLPISKNIMLWLK RLATTETAFYFVDENGQWQEQLKKSQTVIQAKETTFVEQLLTVVKPTEATWLAQWLLLEK TVSEVLLETLNATELNETTASLAVHQTMKENGQLFVSNSMAIRYLDRFMDSRPYRMFGNR GINGIDGIISTALGMSAVAPTQQNVLLIGDLALYHDMNGLFLAKRYQLPLTIVLLNNNGG GIFSFLSQRTLREDDFEPLFGTPLDLDFSLVAELYGASYQEVKTIAELKQILQTAAEEPQ FQVIEVKGNRQENVHLYESILAEIGRRVERQGISWNG >gi|308151725|gb|GL476297.1| GENE 34 30966 - 32333 1532 455 aa, chain - ## HITS:1 COG:lin1784 KEGG:ns NR:ns ## COG: lin1784 COG1169 # Protein_GI_number: 16800852 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Listeria innocua # 2 453 4 459 462 310 37.0 3e-84 MKLPDELRQAYQKNARQFSWVFPLETEQTALAIFAAGEKAYQGERFFWQTPKKDFALVGF GYETILKGAETETHQLNNFLKKESATRFQNMSISGTGALLFGGLPFDTEQTPTEAWGELG EGWFYLPSILFTFSGSRIYGTLNFSGSSEQEVEERWSTLVAQFDRLLATCEELPAVAETK IDKEEVAVTEWLQAVNETVAVLREDGPLKKVVLARQLAVSSPEKIRSNQVLVNLMAQQQN TYLFALEAKDTSFIGATPERLLLGTKETFATACIAGTIKTGQTPEETKALGAQLLQDRKN TGEHQIVVERLAKELAKMTTSENSIQAPIILENRDVQHLYVPISGQRKPGISFLESVMQL HPTPALGGEPKELAVEWIRQYEPGSRGLYGAPIGWISGNDDSGEFAVALRSGVFAGQQGV LYAGCGIVADSQAELEREETKIKFQPMLRGIGGQV >gi|308151725|gb|GL476297.1| GENE 35 32330 - 33787 1233 485 aa, chain - ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 3 474 6 463 469 378 42.0 1e-104 MTWLNKQVQKRPDHPAFYFQDESWTFLEVQQEVSHWVATYQQVLAPEEKRVALFSKNSKE LYFSILALWELGKELLFLNTHLTLAELTFQLKDAQVKTIIGAPETQALLEEISFVDVQPM VKKQHSLSHQEFQQPSDLESVASIMYTSGTTGQPKGVLQRFKNHLASARGTQENMGITAE DCWLCAVPLFHISGLSIVVRQLVLGCSIRLYDKFDEQQVTQDLQEGRGTVISVVATMLQQ LLSVYPEAGYRASFKGMLLGGGPIAPDKLAQCEEKGIPVIQSYGMTETCSQVVALKFEDA ALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNQRQPEKWTADDWF KTGDMGYLDAQGYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWG AVPVAYVISDQELTLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEERE AFLIR >gi|308151725|gb|GL476297.1| GENE 36 33792 - 34607 1058 271 aa, chain - ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 271 4 272 272 461 81.0 1e-130 MRNWTTIKEYDEILFEQAGKVAKITINRPHVHNAFTPKTVMEMIDAFNISRDKEDVGVII LTGAGDQAFCSGGDQKVRGNGGYVGEDNIPRLNVLDLQRLIRVIPKPVIAMVKGWSIGGG NVLQLVCDLTIAAENAKFGQTGPNVGSFDGGYGSGYLARVIGHKKAKEVWFMCKQYSAQE ALDMGWINTVVPLEQVEDVTMEWAEEMLTKSPIALRMIKASLNADTDGLAGVQQLAGDAT LLYYTMAEAQEGRDAFKEKRTPDFDQFPKFP >gi|308151725|gb|GL476297.1| GENE 37 34862 - 35152 231 96 aa, chain + ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 96 31 123 123 74 35.0 4e-14 MHKQPYGLVHGGLNGILIETACSLGANENVPENTFAVGIDLQVNHLRSVHDGSLTVIATP DHSGKTLQVWEAKIYNADHQLTSVGRCTLTNRQKKQ >gi|308151725|gb|GL476297.1| GENE 38 35222 - 35821 874 199 aa, chain - ## HITS:1 COG:no KEGG:EF0443 NR:ns ## KEGG: EF0443 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 312 99.0 5e-84 MKSIKTILLGTTLAAGLGLFLGTDANAESLYTVKAGDTLSTISHQFAGDNSLIQKIASDN KLPNLDLIFEGEQLVIRSEKEIANTPAPAVEVAPVQQVVEQPVAQPVQQEVQQPVAQEVA QPAAPAASSDAKEWIAQRESSGSYDATNGQYIGRYQLSASYLNGDYSPANQERVADQYVA GRYGSWDAAKSFWLANGWY >gi|308151725|gb|GL476297.1| GENE 39 36327 - 36437 68 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQKELNKKILYFACYLFILILFKKGTAKATMKTKY >gi|308151725|gb|GL476297.1| GENE 40 36572 - 36646 60 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLHLSHFIIKYSEYYKNWSFIYE >gi|308151725|gb|GL476297.1| GENE 41 36639 - 38120 1513 493 aa, chain + ## HITS:1 COG:L104437 KEGG:ns NR:ns ## COG: L104437 COG3104 # Protein_GI_number: 15672684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Lactococcus lactis # 5 493 2 497 497 511 55.0 1e-144 MSDKEQLEKLDKSFLGQPKGLATLFFTEMWERFSYYGMRAILMYYIYDTVANGGLGLPKA TALAIMSIYGSMVFMSSIIGGWVSDRVLGSRKTVFIGGLLIIAGHIVLATPFGVPALFVS IMLIVFGTGMLKPNVSGMVGHLYSKTDLRRDAGFSIFYMGINIGALIAPLVVGTLGQEYN YHLGFSVAAVGMFFGLLQYYFQGRKSLAGIGQAPTNPMSKEEQKKFAKAFMLAIVVALLI FGGAYVTGHLTIDFFINTISVLGILLPVYYFSKMLTSKDVTAEEKPKVLAYLPLFLAAIV FWSLEEQGSSILALFANERTQTSLFGFPIAASWFQSLNPVFVVILTPIFVTLWTKLGKRQ PSTVVKFSLGLVFAGLSFVLLMLPGLLYGTEGRVSPLWLFFSFFIMIVGEMCLSPVGLSI TTKLAPKAFEAQTVAIWLLADAASQAINAQIARFYTPGTESAYFGIVGLVAVVAGILLFI VKKPIQNLMGDVR >gi|308151725|gb|GL476297.1| GENE 42 38227 - 38427 354 66 aa, chain + ## HITS:1 COG:no KEGG:EF0439 NR:ns ## KEGG: EF0439 # Name: not_defined # Def: immunity protein PlnM, putative # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 90 100.0 1e-17 MRYLIGGIFLLISIWQFIVTGRTFSYLKKEGGKRTSPFILLGLWSSLVFAIISFAVAIAS FFYVSF >gi|308151725|gb|GL476297.1| GENE 43 38511 - 39347 809 278 aa, chain - ## HITS:1 COG:mll1734 KEGG:ns NR:ns ## COG: mll1734 COG1082 # Protein_GI_number: 13471685 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mesorhizobium loti # 19 219 17 218 304 90 28.0 3e-18 MLTLAVRAHDVGTKISPVELAKKIAETNITSIQFALGISYPEYASAAVLSPGLGSQLKNI FEDEKITISVLSCYINLIHPDLEEREKRLHQFETYIRYASMFGAKIVATETGSIYETIYY TEDNYTEEAYEEVLFSVRRLCREAEKYGIIVGIEPGINHPIHTIEKMQRLIDEVASTNLG IILDPTNLIRVDIDKTYLEIVEEAFECFGEKIVAFHLKDFIIRNQQIFPVAIGEGQVPLK ETIQFLNKHKPGLFTIFEETPFEKIASAYQKVSQYHSI >gi|308151725|gb|GL476297.1| GENE 44 39349 - 40269 802 306 aa, chain - ## HITS:1 COG:CAC2818 KEGG:ns NR:ns ## COG: CAC2818 COG2207 # Protein_GI_number: 15896073 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 16 281 8 275 279 151 29.0 2e-36 MKSVKEIRKSQVNSMISDQYEIFHVKDMVSPEKTIYHYHDFYEVHCTLKGVATFFLDGHQ FDVEAGTVLLIHYHDLHRIIKQSTDNFERMYIFLTPDFLQQRSSKRTNLSACFQHFGQRR SKVIKVDVAKLANYLTPLDHSPLPEEYGADVRYEQQLLDFLIYLNQLVLKEENESQPKQM IENERIEAMITYISQNLDQPLTLEQMEKNFFVTKYYVTREFKKHTGFTFHQFVLKKKLLY AKQLLKEYRSASDVYLKCGFKSYPHFLKSFKKEFNMTPKEFLVKHKNNQIIHFDHYEESI KKVRLE >gi|308151725|gb|GL476297.1| GENE 45 40479 - 40769 326 96 aa, chain - ## HITS:1 COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 96 8 103 104 104 52.0 3e-23 MQVYPDQHAEYQRRHEKLWPEMRQMLKEHGVIKYQIFLNPETSTLFGYLEIEDEARWEQI ALTPINQKWWNYMEDIMETNPDCSPVTTELRKVFEL >gi|308151725|gb|GL476297.1| GENE 46 40787 - 41635 1096 282 aa, chain - ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 5 272 4 271 273 421 70.0 1e-118 MKKMNVLQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMK FDATKLAGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELP SHFMSHIARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGV GIIPWLVPGTNEIGVATAEKMKESRLVLWPQHGIYGAGRDMDEVFGLIETAEKAAEVYTY VCAQGGVRQTISDADLWRLAEAFGVTPKVGYLEEKVSKRRKL >gi|308151725|gb|GL476297.1| GENE 47 41663 - 42949 1632 428 aa, chain - ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 2 416 5 420 420 677 73.0 0 MTTITQKYEEAKEKYASIDVDTEAVLEKMADVKISMHVWQGDDVRGFLSEDELSGGISVT GNYPGVARSPQQLRQDLEKAISLIPGKHKLNLHAIYLDTEERVDLNELEPKHFEPWVTWA KENGLGLDFNPTFFSHPMYRDGFTLAHPNPQVRDFWIEHGKRSRRIAEYFGRELGQVAVN NFWVPDGFKDNPVDRLTPRKRLMASLDEIFSEEIDPAYTVDAVESKLFGIGSEAYTVGSH EFYMGYGLTRNKLICLDAGHFHPTEVISNKLSSLSLFGEGMLLHVSRPVRWDSDHVVIMD DELQEIAKELVRNDLLGKTHVGLDFFDATINRVAAWVIGTRNTQKALMKAMLEPTNVLKE AELMGDFTTRLALTEELKDFPFADIWNYYCQENHVPIGLDWLTDVQEYEKVILPTRQLPT GKDSCRFS >gi|308151725|gb|GL476297.1| GENE 48 42946 - 44448 1459 500 aa, chain - ## HITS:1 COG:BS_yulC KEGG:ns NR:ns ## COG: BS_yulC COG1070 # Protein_GI_number: 16080172 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 17 492 3 476 485 519 53.0 1e-147 MTTINKVKKEQVEKRTYLAVDIGASSGRIMKSQRLANGQITIEEIHRFKNGFHQKDGYQR WDMASLVHELLLGLQKVKQLGIKECFIGIDTWGVDYCLLDQSGQLLDEPIAYRDGRTEAA VTNFSKGYSLEKLYQQTGIQVQPFNTIFQLFVEEKERLAAASQLLLIPDYLGYVFTGKAV IEATNASTTQLLNAGTKQWESELLDFLGIDETLFPTLVEPGTILGDLQTAAFPDYDLPNA TLITITSHDTASAILGTPGIGDDWAYISSGTWSLLGIETTVTTISAEAFQENYTNEWGAQ NTIRFLKNIMGMWLIQEVARHQNYQYSYAELAALAEKEPAFQQFIDVNDPRFLNPGNMIT ELQAYCRETQQTVPESPGELARCIYDNLALCYSVELEKLAQLTGIERKITTLHVVGGGSN NRLLNQLTADVANVTVKAGPGEATALGNLLMQMIATGELKDIPAARTCIQTSFPTEIYQA NPIDSTIKNRYQAFMKRSSL >gi|308151725|gb|GL476297.1| GENE 49 44577 - 45017 373 146 aa, chain + ## HITS:1 COG:no KEGG:EF0432 NR:ns ## KEGG: EF0432 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 139 1 139 290 276 100.0 3e-73 MDYWEKADYSWSDDSKRHILTPSSKSRTLFYYIQEIGQFKASRPYYTERAHLPSYLIKFT LNGTGELRYRYHTYSLQRGDLFFIDCRDYQYYQATSEDPWEMDWIHFEGGNSGAFFQEFM KNGSPVFSTNQLPEDNPIHLIIQQLL >gi|308151725|gb|GL476297.1| GENE 50 45093 - 45449 311 118 aa, chain + ## HITS:1 COG:BH1958 KEGG:ns NR:ns ## COG: BH1958 COG2207 # Protein_GI_number: 15614521 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 16 115 405 505 516 83 44.0 8e-17 MQKYRQDFTYETIPSLVLEMKAYIDQHFKETISLEDLAQLFHLNKYQLNKEFSKYIGLPP IKYQISKKISYSKDLLRYSNQTVKEIAVDVGLENYAYFSRLFKKRTGLTPSQYRKSGF >gi|308151725|gb|GL476297.1| GENE 51 45597 - 46892 1089 431 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 7 427 6 426 435 424 48 1e-117 MALEAGIILFVVFAVLLVVGMPIGMSIAASSIATLLLVIPFEAAAFTSAQKMVSSLNSFS LVAIPFFIFSGVIMNNGGIAQKLVNFSMLFVGRVPGALAHTNVLGNALFGSISSSAIAAS TAIGGVLIPQQVNEGYDRKFATAVNIASAPTGMVIPPSTAFIMYSLVAGGASISSLFLGG YLVGSLWALGIMVVAYVIAKRHNYPTVAKAKKGEVSKVLREAVPSVLLIVIIIGGILTGL FTAIEASAIAVAYSLLISMFYYKTVKINDLPKMLKEAVLMSGTIMFLLATSSMMSFAMAF TGIPEAISTAILGITDNKYLILLLVNVVLLFVGMFMDVGPAILIFTPIFLPIVMNVGVDP VHFGLFAIMNLCVGSITPPVGTGLYVGASVGGVKAEQMLKPLVPFYLVILAILLLITYVP ELVMWLPNLIS >gi|308151725|gb|GL476297.1| GENE 52 46928 - 47209 145 93 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239995925|ref|ZP_04716449.1| ribosomal protein S3 [Alteromonas macleodii ATCC 27126] # 1 87 65 153 161 60 33 5e-17 KKGHLAVTLLSEKLQGKQKRFLEFIVQLLFLLFAGVIMIFGGWNGVVITLGQISPSLAIP MGYVYLAVPVAGVLMFIYSLMNLLELFTQSKDS >gi|308151725|gb|GL476297.1| GENE 53 47194 - 47403 117 69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1 62 1 62 164 49 35 1e-16 MKGFRKFLNRLLEILGSIILAAMVLVVLYQVFARTVLKNPSTLTEEFVRFALVWLAMLAS AYVVGKRDI >gi|308151725|gb|GL476297.1| GENE 54 47418 - 48428 591 336 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020579|ref|YP_526406.1| ribosomal protein L22 [Saccharophagus degradans 2-40] # 1 334 4 331 331 232 37 8e-60 FMKKRKVLFTAVMILAGLQLLSGCGKTEASASDTVVLRYAYASNSQPVIDSMKKFGELVE EKTDGKVQIEYFPDGQLGGETELIELIQTGAIDFAKVSGSALESFSKDYSVFAIPYIFDN EKHFFKVMDNQALMQPVYDSTKKLGFVGLTYYDSGQRSFYMSKGPVTSPDDLKGKKIRVM QSETAIKMVELLGGSPVPMGSSEVYTSLQSNLINGAENNEFVLYTAGHGGVAKYYSYDEH TRVPDIVIMNEGTKERLTAKQEQAIEEAAKESTAFEKTVFKEAVEEEKKKAQAEYGVVFN QVDSEPFQKLVQPLHESFKNSSEHGELYQAIRQLAD >gi|308151725|gb|GL476297.1| GENE 55 48446 - 49552 1292 368 aa, chain - ## HITS:1 COG:STM1911 KEGG:ns NR:ns ## COG: STM1911 COG4225 # Protein_GI_number: 16765253 # Func_class: R General function prediction only # Function: Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins # Organism: Salmonella typhimurium LT2 # 1 367 11 378 379 454 56.0 1e-127 MIIKQEQFIPKDTVETTIDLLIRNLTTIKDNTGEFLLDFDGLKVDDKSWTIWNWPQGVGL YGIYKNYRNTKSEKALQVVNDWFEGRMQEGAPPKNVNTMAPLLTMAYLYEDTKDSKYIPY LEQWAEWVMEEMPRTNEGGLQHATYGPENKNQLWDDTLMMTVLPLAKIGKLLNRLDYLEE AKHQFLIHIKYLQDKKSGLWYHGWTFEGNHNYAEALWARGNCWITIAIPEIIEILELPKG DSLREFLLSTLNAQVAALAKYQDESGLWHTLINDSNSYLESSATAGFAYGILKAVHKKYI SSEYEEVANKAIAGLLNEIDETGEVQHVSVGTGMGDNLDFYRTIGMTAMPYGQSLTILCL TELLVSYC >gi|308151725|gb|GL476297.1| GENE 56 49782 - 50570 200 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 252 4 238 242 81 26 2e-14 MEFKMNDFQLDGKVALITGAVYGIGFEIAKSLAEAGATIVFNNLSPESVEQGLENYRAAG IEARGYVCDVTDEEQVQAMVAQIKEEVGSIDILVNNAGIIKRIPMVEMSAEEFRQVIDVD LNAPFIMAKAVIPDMIEKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYG QYNIQCNGIGPGYIETPQTAPLREPGHPFNEFILGRTPANRWGTPADLAGPAVFLASNAS DFVNGHILYVDGGILAYIGKQP >gi|308151725|gb|GL476297.1| GENE 57 50592 - 51431 992 279 aa, chain - ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 4 279 1 276 276 320 53.0 2e-87 MQNMETRYTHSPADIRHYSTEQLRDEFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEEL EIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSEN PDNPAKFYISCVPAHHKYPNVKISIDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQM GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAIS PSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVAMDQLK >gi|308151725|gb|GL476297.1| GENE 58 51444 - 52451 1050 335 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 3 335 2 339 339 225 40.0 1e-58 MGKVVTLGEIMLRLSTPVGIRVAQTENFAVHYGGGEANVAISLANYGHQVTFASKVPDNS LGEAAKKHLSRYGVSTEFVRTGGTRLGTYYLETGTGERAASVVYDRAYSSFAQIEEMEWD LHELFSGVEIFHISGITAALSKNWQSMTVALVKAAKQAGCQVSFDINYRGKLWSQKEASV ALKAILPFVDICSAGVLDARYLLEIPEPEEELEDALTWYYRKMQERYPNIQVFYSTKRQV HSATDNELIGTLWYKGAYYTSKCHRLQPIVDRVGAGDAFAGGVLHGILAAYDPQTCIDFA TAASALKHTVHGDCNQFSQKEVLAFLATGSGKINR >gi|308151725|gb|GL476297.1| GENE 59 52456 - 53103 917 215 aa, chain - ## HITS:1 COG:SP0317 KEGG:ns NR:ns ## COG: SP0317 COG0800 # Protein_GI_number: 15900249 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 206 1 206 209 221 53.0 6e-58 MKRVSILQKLENAGVIAVVRGKTKEEALKASQAIVAGGMRGIELTFTVPQATEVIQELVA LYQKNPDVVIGAGTVLDATTARLAIVAGAEYIVSPSFDEETAKICNLYQVPYLPGCMTIT EMKEALKSGADIIKLFPGSVYGPSVISAFKAPLPQLNIMPTGGVSLENMAEWFDAGVTAV GVGGNLLAPAATGDFEKVREVAQAYMEKFQAIKGV >gi|308151725|gb|GL476297.1| GENE 60 53264 - 54016 891 250 aa, chain - ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 11 250 4 244 246 123 34.0 3e-28 MKETKPYGTVLLKAAKIMDCLSLQPDQTLQEIAKNTEMTASTAIKILETLTLIGYVQKDT NKTYRLGTKLIRYANQSVEQIDLAEIAVPYLENLQNTVDETIHLGILNNNEILYINKLEP KNQTIRMSSKVGITRPLYNSAMGKAVLAEFSEEQVQQYLDTQTLIPYTENTITNPLRLKK ELKQVQQTGVAYDDEEIEQDIFCSGVSLMKDGEIAGAFSVSMPKYRLTEENKTTINQALL ATKAAIEAKL >gi|308151725|gb|GL476297.1| GENE 61 54147 - 54614 525 155 aa, chain - ## HITS:1 COG:no KEGG:EF0421 NR:ns ## KEGG: EF0421 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 5 155 1 151 151 288 100.0 4e-77 MWSKMIQRLLNEENLLIGISELSEIAEVSPRQLRYWEEKGYISSIAKDANGPRKYRLHTV VKVHWIKRFLDEGYTLQSAVEKAEEQHRNVGMTKKIFSQMFHGISEVCPNYVAIDLGDFD EEQKLYVVFNETTEVSEYLLIPKDADVSDELKKRK >gi|308151725|gb|GL476297.1| GENE 62 54757 - 56232 1748 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 484 7 487 493 518 61.0 1e-146 MTSQQPVDIHGKPYNRSLLVGVLLIGTFCTILNQTLLTTALPTLMKEFDISASSVQWLTT GFLLVNGIMIPISAWLINKFSSKKLYITAMSTFLIGTIICFVAQDFGMLLTGRLVQAAGV GVSMPLLQTIMLSIFPPEKRGAAMGTTGIVIGLAPALGPTLSGWIIDSYTWRDLFGMVIP IVVLVLILASFLMKNVIQLSNPSIDVLSVILSTLGFGSLLYGFSSVGDKGWGSPQVYGFL IVGAIVLCLFTYRQLHLEQPFLELRVFKSKVFTVAAILSGVTNMAMIGAEMVLPLYIQNI RGESAFHSGLMLLPGALVMGLMMPVTGRIFDKIGARRLAITGMFILTAATLPFAFLTKAT PIIYIIVLYAIRMFGISMVMMPVTTSGMNALPMNLLSHGTAVNNTFRQVASSIGTAVLIS VLTNVTKDGLPASDLLKTAPLTYRDQATNATLNGYHAAFFVATIFGVLGLAITFFLNKKE AMPVKEVGAMK >gi|308151725|gb|GL476297.1| GENE 63 56232 - 56936 710 234 aa, chain + ## HITS:1 COG:no KEGG:EF0419 NR:ns ## KEGG: EF0419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 427 99.0 1e-118 MIIFLLILCVLGFAYTNVFGRKVWHKCCMVIFGLGFLASLSLIVLNDKDHFGMTEVTQDK TFELKSSSSSKDGPNMLLYQPLGDGSEKVYLYNTPDKKKLQKTGTENVTNTVQKDAQKST LVQKTTKWSYQESWAKTLFGLADNDNQFAKQENTFNVASDWLVLSADQAKKLGEYMEQHA ADIKKEGTETVGKKMMAAMMANPSMSQEEQAKLTEQYTKEFQQELIQKILSDMK >gi|308151725|gb|GL476297.1| GENE 64 56991 - 58220 276 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 12 407 15 410 413 110 26 3e-23 MIANLFVSTFLSLKAHKLRVFLTMVGIIIGITSVVTISALGEGMKRQVVKASSAVNADVL KIHYTMSDGSSDNFMSYEEPDYTFSRVDLKKLQDIQGIESIYPQYGESMMGGGDNLFVPM DYFGAQANLSITSTKGQNDILYGRDFQPSDANTDAIVLNHDIFEAQIRLDDPSQLIGKAV SIGGYMYKVIGILAPKDLDSLGMNDDWATAMSSFVSRESYNKLAKTKAISGINIKVREGA DREAILGQAITILSENHPEVKGTFKENDQDQQLQQQMEEMVTGMTMFLMAITAISLLVGG IGVMNIMYVSVTERKREIGIRRAIGAKPRVILFQFLMEAAFITLIGGLIGVGCGYLLATV VGGYISITPIITPSIFAISTLVSVFTGIFFGIIPAIGASRMDPIKAIYN >gi|308151725|gb|GL476297.1| GENE 65 58217 - 58924 263 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 232 7 217 311 105 32 9e-22 MEANNTNQPLIELRDINKFYPVGKEKLHVLKELNLTIHQGEFILIMGKSGSGKTTLMNII GFLDRLTDGSYHFSGTDVSKLSENKKSAFRNEYLGFIFQQFFLINSLNVSQNVQLPCVYE GKKSRAEKKAIAEKYLKIVGLETKAKSKVTELSGGQQQRVAIARSLVNDPLLIMADEPTG ALDSETGTEIMELLKELNEQGKTIVMVTHDEDMKKYASRVIHMKDGRFLEEEVIR >gi|308151725|gb|GL476297.1| GENE 66 58937 - 60091 1416 384 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 73 364 76 377 377 76 28.0 8e-14 MGAVAVIAVGGIVTVNALNKNAQQVAVKQAPKDDWGIDYFDVPDLQQIYINGVIQPEQME AFARDQKITKDPEIKVKNGDVVDAGTELFTYEDEAVTKEIEAQQNSLAKLETKRANIYNK WNRAIDKFNKTKEEDRTMSGDDLNEQYQTEVDAVDEEITFTNETLADLGAKQYISTKANF KGRVSIPEVKDANSPILRLTSEDLYLAGKVNEKDLTKISVGQKAKLTSVSNNVVVDGSIS YIDDNPPEGNSDAASGNPEGGTTMSSYSVKIALANLDKVKNGYHMQATIDLGDLGAIELP KKAIQKEGEQAYVLVNDFGTIIRRDVQVGQENGDKMAIESGLESADRVVISSKKPVKVGD IVESDAAIASDESATNESMTDASK >gi|308151725|gb|GL476297.1| GENE 67 60436 - 61074 459 212 aa, chain + ## HITS:1 COG:YLR290c KEGG:ns NR:ns ## COG: YLR290c COG0702 # Protein_GI_number: 6323321 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Saccharomyces cerevisiae # 2 89 4 95 277 68 36.0 1e-11 MKVIIFGGSGFLGQQIAKILVQRQHQVISVSRHGKPATLSASWSHQVQWVCSDVTRDTNW QEQVQRADWVIDTVGILFENPRKKKTYQRLILTPVKKISSFLAQQKKPAKFLFISANTVP FPLRKYMDAKLAAEELIHQEVAEAVIFYPSLLVGQERTGTILFSKCIYFFKKIPFLKNLF IGYDPVPVAEMAQEIVHVLEGGNSIYTHRRTL >gi|308151725|gb|GL476297.1| GENE 68 61153 - 62268 995 371 aa, chain + ## HITS:1 COG:L125707 KEGG:ns NR:ns ## COG: L125707 COG0665 # Protein_GI_number: 15673855 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Lactococcus lactis # 1 365 2 366 373 399 56.0 1e-111 MKKIAIIGGGIIGMTLANYLDPQKFDITVYDEGLGQATKASAGIISPWLSKRRNKKWYQL AREGAALFPKLVKDFQLTEDIYRQSGTVILRPAAALADLAHLAEERKQTAPEIGEITMLS AVQTAKFLPLLKETPSLFISGGGRLDGPAYLNHLQKRAEAKGVTFCSQRAHFRQLNQGWE IVTNSEKKSVDFLALTPGPHLKELLATLNLSVDIRPQKGQLLVFETPFTNSQQWPVAMLD GEADLIPFNQGKILLGATHENEQAWDLEETVSAFQQLTSGTAPFLKEAEQLFKQPMHYRV GTRAYTSDFAPFFGPLPEMPHLVVASGLGSSGLTTGPFIGYQLAEYFNTGAFKGELYQKP LSQYVKNNPSL >gi|308151725|gb|GL476297.1| GENE 69 62335 - 63489 1556 384 aa, chain - ## HITS:1 COG:L33416 KEGG:ns NR:ns ## COG: L33416 COG0246 # Protein_GI_number: 15672006 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 3 380 4 385 385 417 57.0 1e-116 MNAVHFGAGNIGRGFIGEILAKNGFHITFVDVNETIIQALKERKSYTIELADASHQQINV ENVTGLNNMTEPEKVVEAIAEADLVTTAIGPNILPRIAELIAQGIDARAEANCQKPLDII ACENMIGGSTFLAEEVAKYLKNPAYAEQWIGFPDAAVDRIVPLQKHEDPLFVQVEPFCEW VIDDTNRKAKEIQLEGVHYVADLEPYIERKLFSVNTGHATVAYTGALLGYQTIDEAMQDA LVVAQLKSVLQETGKLLVAKWNFDEQEHAAYIEKIIQRFQNKYISDAITRVARTPIRKLG AQERFIRPIRELQERNLVSPHLLAMIGIVFNYHDPEDEQSRQLQEMLDQESVDTVIAEVT GIEDPETVKNIKQNVERYARPQVA >gi|308151725|gb|GL476297.1| GENE 70 63504 - 63941 636 145 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 140 8 139 143 174 65.0 6e-44 MENLTNISIELNQQFNTKEEAIRFCGEKLVEAGCVEPAYIEAMIERDQLLSVYMGNFIAI PHGTEEAKKLVKKSGICVVQVPEGVNFGTEEDEKIATVLFGIAGVGEEHLQLVQQIALYC SDMDNVVQLADALSKEEITENLAIA >gi|308151725|gb|GL476297.1| GENE 71 63956 - 65728 2158 590 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 7 584 2 585 589 605 58.0 1e-173 MEQVPEKNKVSIKAKVQRLGSTLSSMVMPNIGALIAWGVLTALFIPDGYLPNKAFATMVG PMLTYLIPLLIGYTGGKVIAGDRGAVVGAIATMGVIVGTDIPMMLGAMIMGPLGGFTIKK FDQYFQHRIKAGFEMLVNNFSAGLIGFALALLGFSAIGPIVDALTAAMARGVEIILNAHL IPLTSIFIEPAKVLFLNNAINHGILTPLGTEQVLSAGKSILFLLEANPGPGLGVLLAFMF FGKGAAKSSAPGAIIIHFLGGIHEIYFPYVMMKPLLFLSVIAGGATGSLVFQTLDAGLRA PASPGSIIAILAMTPMGSYLPVILGVLAATAVSFAVSAVILKADAKEESDEFAQKVKETQ AAKAASKGLTVTNGSASLSGIQQIIFACDAGMGSSAMGASILRKKVQEAGLVQTVTNRAI NNLTDEGNTLIVTQAELQERAKQKAPNATFVAVENFLNSPRYDEIVAELSGTKEKNDAQP TVSKATPASEIEGDLANVNEILLVHDDRVGSATMGMKVLEEILDKEKISMPIRKININEL TQQTQALIVTKAELTEQARKKAPKATHLSVKSMVNPQKYETVVSLLKESA >gi|308151725|gb|GL476297.1| GENE 72 65974 - 66069 149 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYEIVTKILVPIFVGIVLKLVTIWLEKQNEE >gi|308151725|gb|GL476297.1| GENE 73 66339 - 66773 455 144 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 139 2 139 143 124 43.0 6e-29 MFEITAEQIMLNQSYASWEEALAASGELLLKNQLVTPDYVKAMYQRQQKVSVYIGNFVAL PHAEGQDEQVLKEGICFIQVPDGVNFGTEADRKIATLLFVVALKSQRQLSMLQELAFFCS DLENIQRLSDCRTIDEAQKILAQA >gi|308151725|gb|GL476297.1| GENE 74 66784 - 68817 1855 677 aa, chain - ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 676 1 689 694 235 27.0 2e-61 MFLTTRETVLLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVAR GRFSIQADEAAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISN TTFYADIKQLETRIARIPLTISRNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELT TNDHFFFQFIHAEHLAFAQKIVQPEVETLFPALSDRKLQHLILMLTIAMDRVTAGFYLAD ETYTGQMNKAFLNCSKRLFSKVAAETKQLYAVSEIVFFASLLSDFSNSFDEDFFDEHFDT QLAYEVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRAVLQEEDLTNPILERIMNQ YQEIAAALRQALPQIFPQKNLSEEEIAYMVLHFANSLERSPKIMEVDIAGFSPSGLASTS MLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVISTSLLPGYNGKYKLISPLLLDDE IRQLKEEFKRISHEKRSLRKAPVKKIGGEESYETVVAFMEEISKLLETFFIADLNNQADL AETVQQALAQLSADLITDSAIVCQQLMKRYEQAPIGIPQTEMALFHTSSTAVTQPVFCIF NLAQPLMIEGMDKKPMQLQRMLLMLAPMPIDETIGKILGKISGAIIMNDLNTEIFHSGNE AIVYQLLSSLLIEEMKG >gi|308151725|gb|GL476297.1| GENE 75 68808 - 70550 1453 580 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 22 570 11 582 589 372 39.0 1e-103 MKEKEMHSLFFKHKFVKVTPYLRRFGHRLSGMIMPNLSIFIAWSLLSLVAGYTTGNLRLA LSEVETIMIRVVLPILIGFTGGKMFEEQRGGVVAAIATVGVIVSTDVPQLFGAMFIGPLA GYTFAKIEQILLPKVKEGYEMLTKNFLAGIVGGLLCCFGILVVAPAVESASFWLYQFSSW LIEANLLPLVHVFLEPLKVLFFNNAINHGLLTPLGLEGASQTGQSILFLLETNPGPGVGV LVAFLLFGPVGQRKTAGGATMIQLIGGIHEIYFPFVLMDPRLFLAVIAGGMSGTLVFQIF NVGLSAPASPGSLVAILANAPTDARLAVFSGIFVSFLCSFAIASLLLKRQRGIEPVSMIK MKEEDQVETVTPNYQQILFVCDAGMGSSAMGASLLSRQLKAVDLEIPVTYQSVHQMKWQP KTLVVIQAELKQLAQKYVPEKDMVSVQNFLEIKSYYPQVLAKLTASSQEQSSLGSESTET NPTKQIQKLVFLYAENVRGSQTMGMELLRQQAAKQGVAIEVSKEPLETVFFTKETTYVVT RELAQAYHLDLTQQNLYVVTSFLNKKEYQEWLEGGADRCF >gi|308151725|gb|GL476297.1| GENE 76 70734 - 71567 621 277 aa, chain + ## HITS:1 COG:lin2847 KEGG:ns NR:ns ## COG: lin2847 COG0561 # Protein_GI_number: 16801907 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 277 1 277 279 304 54.0 1e-82 MAIKAIVMDIDGTLLTSEKKISPKTRQALVVAQKQGLSLILASGRPTNGMRPLADELEMA HYNGHLLSYNGACVTHHGSQQQLFNQTISKSLSQQILEHLKQFDVIPMINDETFMYVNDV FHNTLHLETGDFNIIEYESRGGNFQLCEWRDLAARLNFPLNKILIAGEPAYLQKYHEAIY APFKETVTAAFSAPFYFEFTAKNIDKARSLEKLTLQLGITAEEVIAFGDGHNDYTMLEWA GTGIAMENAVDELKSIATEVTLSNDNDGIAVALTNFL >gi|308151725|gb|GL476297.1| GENE 77 71619 - 72254 821 211 aa, chain - ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 16 211 1 196 196 289 73.0 2e-78 MTTYTTNDFSEIVFGRKSVRVYDETHKISHEEMLTMIQEATTAPSSVNMQPWRFVVVESE AGKEKLKPLIRFNTRQNETSSAMLLIFGDLNCHERGEEIYNQAYASGKMPKEVRDQQLAA IIPHYESLSREQMNDIVKIDASLAAMQFMLVARAHGYETNPIGGFEAEKLAETFGLDQER YVPVMILSVGKGMETGYESVRLAPEKITTFE >gi|308151725|gb|GL476297.1| GENE 78 72259 - 72693 518 144 aa, chain - ## HITS:1 COG:L102062_1 KEGG:ns NR:ns ## COG: L102062_1 COG1846 # Protein_GI_number: 15673454 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 109 1 107 160 100 55.0 6e-22 MSLSLREVSQLLCQLKVLDQKITKVFEEQVGLSLTRYELLMILKERQPCLQTEIQEHLKI DSGAVTRHLKILEEKQYVTRQRNPENNREVLVHLTEKAQQELQQCTAKQQTVTEIIPSTF TKDDCRQLKELLTKLDQSITTKEV >gi|308151725|gb|GL476297.1| GENE 79 72845 - 74248 1689 467 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 458 14 458 459 288 36.0 1e-77 MKEKQKKKTVSVREASIVLLIIVAAIATGVIGLKISPNITILFVIALILGYAMFRKVPFD QMHKGIVDGLKPGIIPIFIFILVGALIAVWIQAGIIPTIMVFGFKMISVKWFVPSVFIVC AIVGSAVGSAFTVMSTIGIAFFGIGSTLGLNPALVVGAIVSGSVFGDKMSPLSESTNLAA AIVEADLFKHIKNLMWSTVPAFIVSLILFMILGQTYANTSLTEVVQVIQVLEDHFTISIW SLLPLALMLICAWRKIPAIITILLNIIVAVIMIIIQNPKVSLQALGNTLENGFVSQTGNA QIDQLLSRGGIMSMMPTVALIILTLSLGGLLMELGLISAVMEVVSQKMSSTPKLILSTLL TGIGVNIFIGEQFLSVILPGNAFKEVYKKEGLDPTVLGRTLEDGGTVINYLIPWGIAGSF VAGTFGVPTLTYLPFVFFSLLSPVFSMVSAFTGLGIKRLSVEPVTEK >gi|308151725|gb|GL476297.1| GENE 80 74838 - 75479 874 213 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 214 214 237 55.0 1e-62 MKVVVTGFDPFGGEAINPAFEAVKKLPAEIAGAEIIKVEVPTVFGTSGEKVAEAIETHQP DMVICVGQAGGRQTVTVEKVAINLAEARIPDNAGQQPSDVPLVEDGATAYFTNLPIKAMV KNCHDHQLPAAISYTAGTFVCNDIMYHLLHLINTKYPTIRGGFIHVPFLPEQTIDKPTFA SMSLEAITDSLFYMIEAAVKTQEDIQLQGGTTH >gi|308151725|gb|GL476297.1| GENE 81 75495 - 76439 1226 314 aa, chain - ## HITS:1 COG:SPy0507 KEGG:ns NR:ns ## COG: SPy0507 COG3817 # Protein_GI_number: 15674612 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 313 8 305 308 207 41.0 2e-53 MSFFTDPSIDLSAKLLEVLYIFMGIILLYTSFRSFRDKTNQHAYGTSLFWGILGILIGFG RFIPPVACGVLIFVMTIPAILQKVTKGESRLPSKEYMEKMSQKLGMKIFIPALSIGVFAI LFATLTTLGALVGVGVGVFVAIFIMMFFSKNNTPKVFFDDAAEMLETVGPLSTLPMLLAC LGAVFTSAGVGEIISKGVSAVVPAGNVNVGIIIYAVGMVIFTAIMGNAFAAITVMTVGIG VPFVFSLGADPALVGMVALTCGFCGTLLTPMAANFNIVPVAMLEMKDKYGVIKNQLPIAL FMLIFQIVYMILFK >gi|308151725|gb|GL476297.1| GENE 82 76436 - 77122 806 228 aa, chain - ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 220 1 221 229 128 38.0 8e-30 MDLLPLLGVLIVIVGFALKFDAILIVMVALIVTAFTGGLGLTSMLETLGTTFVNNRGMAI FIIIMLATGTLERNGLKESAATLIKRFKKVSAGVIIDIYGVFRIIFAAFNVSFGGVAGFV RPIILPMALGTIESKNLPMVPEYEEELKGMASAMENICWFFGQVLFVGGAGALLVQSTLK DLGYEVTLGKLALVEVPVALVALISASIYFTLKEKRLRKKYYGQEGLK >gi|308151725|gb|GL476297.1| GENE 83 77137 - 77238 80 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLETVSLEKITLKIKKVLQMSENWHIMESEILF >gi|308151725|gb|GL476297.1| GENE 84 77315 - 77830 459 171 aa, chain + ## HITS:1 COG:no KEGG:EF0397 NR:ns ## KEGG: EF0397 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 171 1 171 171 248 99.0 6e-65 MFQTFRENFRRHTLLRDAVFIVIGSAIVFNPGAFFQFAGYLIAGYLMLLGLINIYDDYKI KKQTGSWGLGFVTGLIFVVLAVAFLFFAPVIVSILPFLLGISIVINGLVQLTFALNTRQT GALIYSILVLIAGAVLVFNPFKSLLVLMQVFGFILIFMGVIEIIGHFRNKA >gi|308151725|gb|GL476297.1| GENE 85 77846 - 79030 1259 394 aa, chain + ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 6 383 18 393 402 265 35.0 1e-70 MDKESTKWIRFLGGKNLLYTLTILCLIAVTIFLFNTVSFIFKPIFVIFSAVLGPVLFGII LFYLLNPMVKRLEKKIPRVWAIAILYVLIIALLVLAGLQLFPIIQDQTEELIKQFPSFWK STLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAGDYLQTGAQGLGSVFSAVS STFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDEYSQIANIQIGDYLKGQVIA SLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIAFIPGLIIAFQDSTFMVVKF VIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLVLLVMGELFGLMGVIFGIPMYCLVKVT VIYLFRKFKQRYNRFYGDNGEYEHTNFTKDQYLK >gi|308151725|gb|GL476297.1| GENE 86 79082 - 80209 1408 375 aa, chain - ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 1 375 1 365 367 363 49.0 1e-100 MSSQIPFTVDHVGSFLRPETIKKARKKVQAGALSQAELRLIEDEEIKALVAKQKAGGLRG ITDGEFRRGFWHIDFLEGLNGVTGYIPETGYNQTFHGKAAPAYNIRVVDKISFPAQHPFL EDFSFLKEVVEVGDGTVAKATIPSPTMILRQEILSNDGTSRIQTIYPEIGDFYKDLAQTY KDAIAAFYERGCRYLQFDDTNWAFLADQTKQEELRAKGIQPEEIAQVCTTIINEALDGKP EDLTVTTHICRGNHASSWLFSGGYEPIAKELFATNYDGFFLEYDSDRAGDFSPLRHWQNN GSKVVLGLVTSKFPELEETEQVKARIEEAQQFVPLENLSISPQCGFASTEEGNRLTEKEQ WRKVQLLQEIAREVW >gi|308151725|gb|GL476297.1| GENE 87 80617 - 81984 1715 455 aa, chain - ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 270 1 269 270 105 37.0 3e-22 MKKRLFASVLLCSLTLSAIATPSIALADNVDKKIEEKNQEISSLKAKQGDLASQVSSLEA EVSSVFDESMALREQKQTLKAKSEQLQQEITNLNQRIEKRNEAIKNQARDVQVNGQSTTM LDAVLDADSVADAISRVQAVSTIVSANNDLMQQQKEDKQAVVDKKAENEKKMKQLEATEA ELETKRQDLLSKQSELNVMKASLALEQSSAESSKAGLEKQKAAAEAEQARLAAEQKVAAE KAKQAAAKPVQAKAEVKAEAPVASSSTTEAQAPASSSSATESSTQQTTETTTPSTDNSAT ENTGSSSSEQPVQPTTPSDNGNNGGQTGGGTVTPPTPEPEQPTPAPSADPTINALNVLRQ SLGLRPVVWDAGLAASATARAAQVEAGGIPNDHWSRGDEVIAIMWAPGNSVIMAWYNETN MVTASGSGHRDWEINPGITRVGFGYSGSTIVGHSA >gi|308151725|gb|GL476297.1| GENE 88 82441 - 84735 1464 764 aa, chain - ## HITS:1 COG:no KEGG:EF0392 NR:ns ## KEGG: EF0392 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 764 1 764 764 1422 98.0 0 MKRSKWKELIVTGICHILVFPILIQTTVFAETLPSTKQVREGTNHSLTAEKAKSEQPQTK DKLHDEEPLALPKSELIDNEANVTSQTIRERIETPNLTYRYGFINEEGQPVNANEILLQY HSWQGNSPNGINVWEGESQPVTASTVANLKEVVIPSEKVAVYSDMSTVLAASNQTFFLPR YYTSLSLYNKKGEIDPNYPLPTISDASGNQYPTTISQFELEKMSAQQYSQKTGVTFNISE SQKLIVPLYNQVKVDSSNQSGLLNYFKFSGPVYYHVTNRKVTEHFVDTQGKPIPPPPGFR QGKQTLIERDPYAFKQNGLLPSSYEIDSKTYQFQGWYKGKTKPENLEKSVTPSYDITYDD NDDLTVVYKEVPQKNYTFEDVNGVEIAPPSDFIQDHQQPITTDGFRYLAEKKLPQQYSVN GKTYLYQGWYQDKTKQESLEKTKRPINSPVFNEMNDITAVYKEITAKAEMQIEGLVKVMP SGYIQIWQIMLTNVGEVPLKKINLKPASGWSPGLARPIQVTIRVGSEPNKIVPITDENWR VGIALNTEVPIGQTATIMMTTIATGESDQVLQAAVEMNGNFSAVHAADTVRIQPKNQEIV APDKEGFISTPTFDFGKVAISSNTQQHGLKQAADYYENGQENPYLRLKKSQPNWALTAEL SPFEGRVDQLSSMTKLLLGTTNVSGFIQYNQPTETKVALGKTTAIQLVANGVASHIVANG QFDESDVYQFDFSFDQIKLEIPANQGRKDQTYQAMVTWNLVTGP >gi|308151725|gb|GL476297.1| GENE 89 85185 - 86408 1910 407 aa, chain - ## HITS:1 COG:SMa2371 KEGG:ns NR:ns ## COG: SMa2371 COG0402 # Protein_GI_number: 16263735 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Sinorhizobium meliloti # 2 403 3 407 432 241 34.0 1e-63 MDLLIKQVRLQDGEALQDVAIKEGKIIEIAPVITGDAKEVIEADGRVLIPGFVESHLHLD KALIADRKPNKSGTLKEAIEVTAELKPTFTEEDIYDRAKRALEMLIVHGTTALRTHAEFD PAQGFTGFKTIMRLKEEYKELIDMQVVAFPQEGIFKAPGTEQMMYEAMDMGADVVGGIPY NDAPAKKHIDLVFEIAKKYDKDVDLHQDFADEADDMSIEYLCEKTIAEGYQGRVSVGHLT ALHALPEAELAPIIAKMAEANISVMALPATDLHLGARGDQYNVRRAVTPIRKLRDGGVNV CIATNNIRNAFTPYGTGDIVQTAMLAIPVGHLGGADDLKTVLPMVTTSPARAMGLEGYGV AVGNKADLVLLDTKVVEHAIIDIPERLYVIKNGRVTVKTDKKVEIIR >gi|308151725|gb|GL476297.1| GENE 90 86433 - 87788 1840 451 aa, chain - ## HITS:1 COG:no KEGG:EF0389 NR:ns ## KEGG: EF0389 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 451 1 451 451 663 100.0 0 MKKSSKVALIFAFLVSIFVPVAAFADEIGDVVAPTGIMALVVIIPLIVVLVLLFMKVDMI IAGLIGGVLAMLIGGIGLEEANKQMLEAIPMMLGITVPIINSAVAMAVFKAGSYSAALTL AKRGTKGKVEYVSAFIVILLAAATYMSGIGGGSAMVIAPLAFAAVGVVPELIAAMSLAAA VSFTTSPASLESSIVSKLGDISVGSYVSTMRPYWLFFVALAIVLAFWGTKHRNVGFKESA DDEFDKKSNGELFKITLPAIFLLFAVIFGPIVNDLIGFAFFTPLVYMILTLVLIFLCTDF SMNKSVEAMVDGSTYILTRLFQVGIFLAFINVIAQTGTFAVIAGVAENAPAFIVVPVAIL TGILIGIPAGAYVGSVLTLVLPVAVSLNFPPLALGFVAMGVGLGSQMSFVNITMQALSSG FQIPILDVVKGNVKWLSIASVLLLVIGLIFG >gi|308151725|gb|GL476297.1| GENE 91 87854 - 88915 1370 353 aa, chain - ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 7 353 3 349 349 405 55.0 1e-113 MEEMVVVTPEKLEKLMKQKLEAAGLHSEHAEEVARHLTFADASGIHSHGAVRMDYYAERI AKGGITIDPELSFEKTGPSTAIFHGDNGVGQFVCNEALAAAVDLAKESGLAYVGVSQTSH SGTLSYYVKKAAEQGMVALSMCQSDPMVVPFGGTSNYFGTNPIAFAAPRAGHEPVVFDMA TTVQAWGKILDARSRDVEIPDTWAVDEKGQPTTDPYEVRGLLPISGPKGYGLMMMVDVLA GSLLGLPFGKHVSSMYADLTEKRNLGQMFLVIDPSRFTDSERFKENINQMVEELHCVPTA EGFQQVYYPGEIGQLNYQKAMSEGIEIPQSIYDYLVSEIVHYDKYGGQGAFAK >gi|308151725|gb|GL476297.1| GENE 92 89005 - 90225 1183 406 aa, chain - ## HITS:1 COG:RC0223 KEGG:ns NR:ns ## COG: RC0223 COG1301 # Protein_GI_number: 15892146 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Rickettsia conorii # 9 403 6 399 399 186 29.0 9e-47 MKKPSMITQIAIAVVVGILVGLLIPASGNYLKIVGDVFLRLMQMAIPILILGQIVQAVGS INPKELTSLGGRTIAVFGISSLAAALWGVLMAVIFNPGYGVKMTGFQDASIKAQEISITD TILNFVPKNIFDSLTQGSIIQIIVFALFFGLALNKYLQSHPETQLFQIIVDFNEVIITVI RYVMYLAPLGIFALIASTISHLGLQIILPLVKYLLVYGLGTILFLGIWILVITLYCKVSP LRLITNMKNMSVMALATTSSAITLPVALEETETKLGLSKRITNLVLPLGMSLNSNGSAMH MAFTVMTIAQMYQLDFDITKMIYLAITATFVSLANAVVPGAGLVSLAVIVPQMGLPIESI AIFAGVEWFVGMLRTILNVNSDVYSAILVAKSVDEIDYTVFNSSNK >gi|308151725|gb|GL476297.1| GENE 93 90232 - 91170 1303 312 aa, chain - ## HITS:1 COG:L92850 KEGG:ns NR:ns ## COG: L92850 COG0549 # Protein_GI_number: 15674015 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 5 308 6 312 314 305 53.0 8e-83 MSLNVIALGGNAILDTDPTDEGQKAVVNHAAKYIAEFVAKGEQVIVCHGNGPQVGNLLLQ QKAGESEKNPALKLDTCVAMTQGSIGYWLQNALTNEFEKRNIAKPVISVVTQVRVDKEDP SFKKPSKPIGPFYTKEEADAEAAKDGSTYVEDAGRGYRKVVPSPMPKEIVEKEAVRALVE ADVLTICSGGGGIPVVAEDGQYVGVEAVNDKDFSARVLAENVDADRLIILTGVDNIYINY NQPDQKALEQISVAEAEEYIKEGHFAAGSMLPKIEAALDFVKGDDKRKAIITSIENLENI DKEAGTVISQKG >gi|308151725|gb|GL476297.1| GENE 94 91305 - 92558 1653 417 aa, chain - ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 405 11 399 415 219 34.0 9e-57 MENSKKNQAVQVSNSYWIKVVAIFFVGWILMYATRTIFNPVMGVIGEQFGLSNTQLGLAN SIFFLTYAVAQIPFGMIGDKIGRKLVIAVGFIVLAISTYFSGLATTFVMFLVIRAIAGIG QGAYYGPQYALSTEAIPASKRTIGNAIINSGMAFGTSGGYLLSSKLVLENGEHWSKPFFI MAIPTFIVGILFYTILKEKVIRPGEEAARAAAEEGPQEKISLKEIFSNRNLLAAFILCFT SIYANFVIITWLPQFLIAERGFTGASVGFISSLVPWASIPGALIFARLNDKTGATKKLVF TLVPLAILSVFAIAFVTNRTLLISVLILYGLTGKLALDPIMVTFVTKHAPKAALGTTLSA YNFIGMSGSILAPYVTGYLADTAGSMQVGFYLSCVLLVIGLLAFAFLAKDESKPKLG >gi|308151725|gb|GL476297.1| GENE 95 92568 - 93401 610 277 aa, chain - ## HITS:1 COG:no KEGG:EF0384 NR:ns ## KEGG: EF0384 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 467 100.0 1e-130 MNNQLVISDYIFPIHQYGKMGTIHSVFERSFNLKVQDQLINVANFHNYLSSFGMFLPDQL FQEIFPYVQQGNKVKITENQLTFYSTVGVKTIQLTPAEVVSLNITHFKLEKDQLRLLRDR LLARNLERRIGLPLDERAKHIFKKMSQKQKVWTLSEWQEVTNYLIGRGKGLTPSGDDILV AYQTILFILADERAAALAATLSAANLSTTDVSKGYIASSAKGYVNSLLYQLLLDLENHRD NRVDENIDRIIQIGHSSGKDMSFGMLLALQSVELDEK >gi|308151725|gb|GL476297.1| GENE 96 93394 - 96405 3871 1003 aa, chain - ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 579 1 555 555 370 38.0 1e-101 MLHTVILKNNYQDSINLMLLTNKINALDGVTMSQIMMGTDANKDILNNTNLLTDEANSAS ANDMMIVVDSEKENIMEEVMPAIDEFLDDLSAKGTSEETQAATSWSEAFDLLPEANVALF SIPGEYGAPEMERALKNDLHVFSFTDNVSIEDEVRLKKLAHEKGLLMMGPDCGTGIISSI PIAFTNVVSPGNIGVVGASGTGIQEVTTIIDRLGGGVVHAIGTGGRDLSDKVGAITVKDA IVALENHEPTDVITVISKPPAKEVRDEVVELLQSISKPVVAIFLGEKPTSHEGKVYLAHT LEETAKIAVDLANDVAVKKNYFEALAKPAVPTLPEDKVVKGLYSGGTLASEAGMLISEAL DLGGLVKAEGYVLKSHGYEVIDLGDDMYTQGRPHPMIDPDVRIEKIREYAQDEKTGIILF DVVLGYGAHEDMVGALLPAIEEARATAKEAGRDLYFVATVCGTTKDPQNYQSSVDRLKEG GVLVAESNAKAVQLALLLKGIEISEDDKEVVAYNGPTVDVPKPGEKVMELLTTKPRIINV GLQSFTESIVDYGGETVQFNWRPRANGNKKMIKILDALEDYSEQIEAENHKVTDKIKNAQ PFLVDVVPAKSVIPELNDDAQKTLLHAGPPIQWSEMTGPMKGACIGAALFERWADNEEDA LKIFEAGEVRFIPCHHVKAVGPMGGITSGNMPVFVVENRLEGNEAYCILNEGIGKVLRFG AYSQEVVDRLDWIKDVLGPTIAKALKLSEEGLNLNVLIARSITMGDEFHQRNIAASLNFL KELSPLIIKTDIPEDQKYEVIKFLADTDQFFLNVMMATGKAIVDGARKDTNGTIVTTMTR NGVNFGVRIAETGDQWHTAPVNTPKGLYFTGFSEEDGNPDVGDSAITETVGVGAMAMVAA PGVTRFVGAGGFEDALATSNEMAKICEGHNPTFSIPTWDFQGTCLGIDIRKVVELGITPI INTGIAHKNAGVGQIGAGTVRAPLGCFEKALEAYAEKLGITVE >gi|308151725|gb|GL476297.1| GENE 97 96528 - 98120 1084 530 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 520 1 528 531 102 22.0 1e-21 MKLRELLSIGDLKKGKILTKEIGLDNEVDSAMVLEAIDIENWSRKNQLILTSFYALHDLP EKELEIFFVKMRRIGISGLILKTDRFIKMIPEWFIELCFNYEIPLIKITQDISYEKILFT IYEPLLNYQSHVLRTYYDVRQRFTKLERHYPTVETIMQEFYDIIKLPFALKMLDKHLEIS DGDLPHDAIVLSREKLKNSEFTKNDYSLLTLYSHANPKKQLALEVSIFNSYSTNCLLLVY LQDEKVKETDLVIIENAIDVLQEKFNTENLLKKERYTRLNNLADAILQNTPQNPDELNSL LREVQMQELDSYQAIAFSTKDTNTQLMKERIIALLRTLRVKYIFFDQLNYSAVLFNFNES DGKITKLQLSRLLAELLEENDTLTVAVSSLKSREGIKELLIECLDILRFNETFYNGPIVT LADIGVFKNFIREDQLENLDELIPRALYQLAENNYDLFETLYSFFQNNRNYKQTSEAMFL HSKTIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRRRALEKQSNTR >gi|308151725|gb|GL476297.1| GENE 98 98095 - 98907 735 270 aa, chain + ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 14 267 19 269 275 105 29.0 1e-22 MKNNQTLANGATVTIYPATTESTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLAL DYLLAPNTKIDHILGTLTETFQLLNEAIIQNQPFGLCGRSAGGYLMLQLTKQLQTLNLTP QFLVNFYGYTDLEFIKEPRKLLKQAISAKEIATIDQTKPVWDDPFLSRYLLYHYSIQQAL LPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKVV YYLEHDFLKQTNDPSVITLFEQLDSWLKER >gi|308151725|gb|GL476297.1| GENE 99 98946 - 100157 1440 403 aa, chain - ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 2 401 53 455 460 226 35.0 9e-59 MNYWLKNVRIETGYQKEGDWLSGTVTKEVAIEVTDGVFTKIIPNEELVEEPRLTIIDGHH QLILPGLIEKHCHFDKSKLGVPWYPVTPAKSIVERVEAEIPYLDSLELSLTERANHLIDL ELPHGATAFRTHVDVEPMTDLRYFDEVQALAQTKPFAVEIVVFPQHGLLRSDSVELVDQA LAKGADFIGGVDPYSLDGDYKKSLAETFRLADKHGVGVDIHLHDRHEAGTTTIKEIIRLT KEYGLQDKVFISHAFGLNDFIGEERAEVYDALAAEKIHINSSVPITPNTIPPIMELLRHG VNVHLGCDNIYDCWSPYGDGSLQEKLARLGELFNVKDQDALTQLLGLVTDGVTTLDEQGQ ANWPQVGAEATYLLTEAECAAAFVARQTPVEISVVKGTTLYQK >gi|308151725|gb|GL476297.1| GENE 100 100209 - 101012 964 267 aa, chain - ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 75 263 19 204 210 147 44.0 1e-35 MNKKILMGLLSVVTIPLLAACQGGETPSAASKNSQTVTTQSSAKTESTSTTRSVAQTTSK EEVKEPMKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKNATPDLNKHNRYGGNALIPAA EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK DNSGRTAMDYANQKGYTEISKILAQYN >gi|308151725|gb|GL476297.1| GENE 101 101186 - 101305 116 39 aa, chain - ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 39 309 347 347 77 97.0 1e-13 MNDNRFTYTRMGKDNEGNDIQVYVEHEPYQGTFNPEFTF >gi|308151725|gb|GL476297.1| GENE 102 101384 - 102229 808 281 aa, chain - ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 347 531 100.0 1e-149 MKKKIVGTITLLALSALLVGGAGGALTAEAYVPQSVDNPNNLGDLPEYLRSVGIRQDEGL SEKDWAGTRVYDRNGNDLTDENQNLLHAIKFDATTSFYEFFDKETGESTGDEGTFFMTAG ITDVSRLVIISETKNYQGVYPLRTLYQDTFTYRQMGKDKNGNDIEVFVENKATSGPVYGR PQPYPNNRPRTLEFTNGRRAMTEQTGQIDVNRQGDEIIGKTSFDGTPQLLWNGTKVVDKD GNDVTSANQNFISLAKFDQDSSKYEFFNLQTGETRGDYGYF >gi|308151725|gb|GL476297.1| GENE 103 102448 - 103413 1103 321 aa, chain - ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 578 98.0 1e-164 MKKKVLSSITLVTLSTLLIAGYASPAFAGHAANPNSATANLGKHQNNGQTRGDKATKILS GTDWQGTRVYDAAGNDLTAENTNFIGLAKYDGETDFYEFFDKNTGETRGDEGTFFVTGDG TKRILISRTQNYQAVVDLTEVSKDKFTYKRLGKDKLGNDVEVYVEHIPYHGKKLAFTNGR EALTNQTGKIVTNKSGDKILGTTLWNGTKVVDKNGNDVTAANQNFISLAKFDPNTSKYEF FNLQKGETRGDFGYFQVVDNNKIRAHVSIGTNRYGAALELTELNNDRFTYTRMGKDNAGN DIQVFVEHEPYQGTYHPAFTF >gi|308151725|gb|GL476297.1| GENE 104 103598 - 104575 1317 325 aa, chain - ## HITS:1 COG:no KEGG:EF0374 NR:ns ## KEGG: EF0374 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 325 1 325 325 503 99.0 1e-141 MKKKKVFSALTLLTFSTLLIAGCAGGANSATDKSSAASSSTAVSSSAEAAKEQSKGQELT EILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFV TDDGEKRILISDTQNYQAVVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDEKLTF TNGRKDLETETGKIVTSEPGDDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTS KYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGAALELTELNDKRFTYTRMGKD NNGKEIKVFVEHEPYEGDFTPDFTF >gi|308151725|gb|GL476297.1| GENE 105 104761 - 106242 1635 493 aa, chain + ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 488 157 493 498 206 37.0 1e-52 MTIKRRFFISYISAIIITLASVLAVLSLASYITLGTVPSLPQAYRMMNKQRPLTANEEES YLALDQLLKKSPKLLDTPLSKELKETIQTIEAKGLSVIIRKNARFPYYSDNLVEKSLSVH IPNYEMNNIMPTGTLDNAGRLYHYVKSDFHYLDGSNGSFIVLKRESSLFEFFTRWIIWMI LLIILVAIAAAWLINKRLTKTTIEPLEALEKATKTLGKDAQKENPFTPTSHQTVSTEVKQ LQLSFEQMWQDLEEANAEREKYEANRKELIANISHDLKTPITSIIGYVEGLMDGVANTEE KKQRYLTVIHEKSLGLNDLIEELFLYSKLDLDRAVFTMEKTNFTRFIAHILEEYRLEQEL VITSVLPTEALYVQMDPTQMNRVITNLIQNSIKFADPTKEQLAFTISLTHNQTDLVLTIT DNGIGIDKKELPYLFERFYRVDKSRTPTVKGSGLGLSIVKQIIDYHQGTITVTSKKGDGT NVIITLPLLEDEK >gi|308151725|gb|GL476297.1| GENE 106 106239 - 106931 717 230 aa, chain + ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 228 4 228 230 249 57.0 3e-66 MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD GFEICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRY QLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEEL FESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFNR >gi|308151725|gb|GL476297.1| GENE 107 106983 - 108128 1208 381 aa, chain - ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 477 61.0 1e-134 MIYFDNSATTPIYPQALDTYVKTSQRIIGNPSSLHDLGNQANRLLQQARKQIAELINVSA NEIYFTSGGTEGDNWVLKGTAIEKREFGNHIIISAVEHPAVTETAEQLVELGFELSYAPV DKEGRVKVEELQKLIRKETILVSVMAVNNEVGTIQPIKKISEVLAEFPKIHFHVDAVQAI GKVNYSEWLTDRVDFATFSAHKFHGPRGIGFMYWKQGKRLAPLLTGGGQENNQRSGTENV PAIVAMAKALRLHLENEQQRPQHVATLRSYLLKALEEFQNVTVFSQDNEHFAPHILCFAL KGIRGEVLVHALEEKQIYISTTSACSSRKKMASSTLYAMHVPGELATSAVRISLDESNTM AEIEQFMIVFNQLYQKFSRVN >gi|308151725|gb|GL476297.1| GENE 108 108254 - 109990 2141 578 aa, chain - ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 20 574 19 574 576 397 40.0 1e-110 MKNNWIIILVLVIVIIAAVLYLIGYFMRKKNQEQLDELEVRKEALFDLPVFEEIDDIKKM HLVGQSQNSFREWNQRWVELSTRSFAELESQIYEVENQNEIFRFMKAKKAVVEANETMTE MEAEVEVIRNGLKELRESEERNSLEVQKALDVYEELSKSLKDDKASFGPAYSEIQKQLRN VEIEFTQFVTLNTSGDPIEAREVLEDAERHTYELEDLMKRIPPMYEELNETFPDQLKEIE EGYNQLLADDYVFPEQNFAEEIQHAKKRVENSMADLEKTEIAAVEVANRDTATAIDALYE VMEREIEAKKYVVTNQKIIDDYISHSLKNNRQLMIELDHVSQSYTLNNNELGRSRGFQTE IEEIIRRQKDLEPRMKEHTVPYSEIQAFYKECYKILDDIENQQLEIDASLKELRKGEKVA QEKVDEYEFRLRSIKRYVEKQRLPGLSADYLEFFYVATDRIEDLSRALNKMRINMDEINR LCDLCEDDLELLDKKTKDLVNAAALTEQMMQYANRYRHTHETIRAALDKSMYLFSTEFRY QDALDEIGTALEAVEPGAFKRIEDFYFKNINNPNLTAI >gi|308151725|gb|GL476297.1| GENE 109 110176 - 110862 862 228 aa, chain - ## HITS:1 COG:L150333 KEGG:ns NR:ns ## COG: L150333 COG0637 # Protein_GI_number: 15672725 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 7 219 5 217 222 172 42.0 3e-43 MTESKTAIIFDMDGVLVDSEAYYYERRKAFLAEFDLTIEGLILPELVGADMRSLWQKIEQ VNKKELDIAFLNEQYIAYKKAHPIDYLAVLDENAKRVLQFLKRQGYKIGLASSSTKDAIE EVLTVGQLSSYFDAVVSGEDFEESKPAPDIYLHTLQELAVAPQECIAIEDSEKGIASAKE AGLEVWAMRDEHFGMDQSQADAFLTQLSDICKKISENRIDESSESTPS >gi|308151725|gb|GL476297.1| GENE 110 111049 - 112401 1525 450 aa, chain + ## HITS:1 COG:SP0413 KEGG:ns NR:ns ## COG: SP0413 COG0527 # Protein_GI_number: 15900332 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 454 564 62.0 1e-160 MNVVKFGGSSLASAPQLQKVLQIVKEEPRRTFVVVSAPGKRTPQDIKVTDLLIQYYQRYL NNEEIESTISAIIRRYEDLFDELHLDKAVLADIAISIRQLATLPKENNAFLFDYFLASGE DNNAKVVASFFNQNGLDARYISPKELGLLVTPEPGNARILPKALEKISAYRETQQILVIP GFFGYTEAGEICTFSRGGSDITGSIVAAGVQADLYENFTDVDGIYVAHPGIIEQPQTIQE LTYREMRELAYAGFAVLHDEALMPAYRANIPVVIKNTNNPHHPGTLITTSRKVKHAPVVG IASDQGFASIYISKYLMNRELGFGRRLLEVLEKLALSYEHMPSGIDDITIVLREDQLTTE IENRLMAQLQEVLAPDELRITHHLSMIMIVGEGMRQRIGVTAESTMALAKEKINLEMINQ GSSEVSIMFGIKKEQEEKAIKALYRTFFHD >gi|308151725|gb|GL476297.1| GENE 111 112424 - 112960 609 178 aa, chain - ## HITS:1 COG:L143879_2 KEGG:ns NR:ns ## COG: L143879_2 COG4696 # Protein_GI_number: 15672719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 14 170 21 176 184 170 56.0 1e-42 MSEKQSPYEMACAFHEVFNPQQPEQPTAFSPELASRRAEFKVEELVEFLYSAADNDQVLF QQLVNGLKKSVDKAEQKVLAKGKPVSDPLVEEVDALVDLLYFTYGSFCLMGVNPTKIIEI VHQANMGKLFPDGQPHYDPETNKVLKPENWEQDFAPEAKIKAEIQRQLKITETNEKDE >gi|308151725|gb|GL476297.1| GENE 112 112977 - 113810 810 277 aa, chain - ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 277 2 279 281 261 46.0 9e-70 MIRLGLTSFSEHDYLTGKKRATLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFR FVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENV AYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFY PYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF >gi|308151725|gb|GL476297.1| GENE 113 113861 - 114595 898 244 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 239 245 176 39.0 3e-44 MGKKHTSSYEVAYYDGDFTGAMKIPALLAVVIKVSEEQTELLGRDAAYVARFGLGWVITN YEIEIHRLPKVGEKVAITTQAMSYNKYFCYRNFWVHDEEGNECVFVKSTFVLMDQKNRKI SSVLPEIIAPFDSEKITKIYRHEKIEKVTEGNFLPYRVRFFDIDGNQHVNNAIYFNWLLD VLGYDFLTTHQPKKILVKFDKEVEYGQEVESHYEIVEQENQLKTRHEIRIDGQTYCEANI DWTN >gi|308151725|gb|GL476297.1| GENE 114 114870 - 115454 770 194 aa, chain + ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 193 7 191 294 171 47.0 1e-42 MKKSLLTIVLAFSFVLGGAALAPTVSEAHGYVASPGSRAFFGSSAGDNLNTNVGRAQWEP QSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWD YYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGD TVNAFYQAIDVNIQ >gi|308151725|gb|GL476297.1| GENE 115 115497 - 116543 1132 348 aa, chain + ## HITS:1 COG:lin1996 KEGG:ns NR:ns ## COG: lin1996 COG3469 # Protein_GI_number: 16801062 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Listeria innocua # 11 347 13 349 352 453 66.0 1e-127 MKLKKIIPAFLLLSTVAVGLWLTPTQASADAADTMVDISGKKVLVGYWHNWASKGRDGYK QGTSASLNLSEVNQAYNVVPVSFMKSDGTTRIPTFKPYNQTDTAFRQEVAQLNSQGRAVL LALGGADAHIQLVKGDEQAFANEIIRQVETYGFDGLDIDLEQLAITVGDNQTVIPAALKI VKDHYRAQGKNFIITMAPEFPYLKPGAAYETYITSLNGYYDYIAPQLYNQGGDGVWVDEI MTWVAQSNDALKYEFLYYMSDSLIHGTRGYLQIPNDKLVLGLPANRDAAGSGYVVEATPV AKTFDQLAKDGNPIRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLVK >gi|308151725|gb|GL476297.1| GENE 116 116639 - 116950 574 103 aa, chain - ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 104 105 84 46.0 3e-17 MSWLYLVIAGCFEIFGVGSIKLFTTKKDLRSLLILILAFSGSFLFLYLGMRQLPMGVSYA VWTGIGTAGGAILGMLLGESKDLRRIFFIFLIIVSVIGLKLIG >gi|308151725|gb|GL476297.1| GENE 117 116947 - 117282 406 111 aa, chain - ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 84 49.0 5e-17 MSKAWLKVIFGAFCEVIWVIGMKHSITWWEILGTVIAIFISFYALIKAGEELPVGTAYAV FVGLGSAGTIVTDHFLFHTPLGIGKVLFLLLLLIGVIGLKMVTGNKEEETR >gi|308151725|gb|GL476297.1| GENE 118 117565 - 118539 1248 324 aa, chain + ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 7 316 7 316 319 412 62.0 1e-115 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD MTFFDFSGLPKGTKGTNTISRTSFRVKDDAALDYWVSRFNEYAIDHGEIQERFGKKYLEF EDFDNQRYQLISDEKNQGVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL GFKLIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADEEALRFWI EKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEKLSLPPFL EPKRAGIEEFVRPFDTSDANVQRN >gi|308151725|gb|GL476297.1| GENE 119 118561 - 119181 663 206 aa, chain + ## HITS:1 COG:L81206 KEGG:ns NR:ns ## COG: L81206 COG1853 # Protein_GI_number: 15672060 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Lactococcus lactis # 1 205 1 195 196 180 45.0 2e-45 MIHYNSNELSAKTAYKFLSGSIIPRPIAWVTTQDTATGVVNAAPFSFFNAAAAEIPLATL SILRPDKAPKDTARNILATKELVIHFVNEDVLTQMNQTSAPLAAEISEIDTFGIETIASQ TVAVPAIKAAPIRMEARLHQYVPIANHEGQIITDLFIVEITDFYFDSAVFDEEHQYILPK KLQPIARLAGNDYTTLGEIREVRRPT >gi|308151725|gb|GL476297.1| GENE 120 119248 - 120576 1422 442 aa, chain - ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 442 1 443 445 561 61.0 1e-160 MTAIEPKLTEKFHQDFLNNNKQNALQRSVVKNGISASGESVQGAVNNVPVFSVDLATGKV ANQKQSGRCWMFAALNTFRHRMLNAFQLKDFELSQNYTFFWDKYEKSNYFYENIIATADQ PLTSRKVAFLLATPQQDGGQWDMIVSIFDKYGVVPKTAMPESSNSSNSRDLNNYLNKKLR KDATILRSLIEKGASAEEVQKNKEAMLQEIYNFLAISLGTPPETFDFEYRDEEKNYHLDQ NLTPQTFFEKYVGVNLHDYVSIINAPTEDKPFNKTYTVEMLGNVVGGKEVKYLNVEMAAF KKLAAAQLEQGESVWFGCDVGQSSTRDTGIMALDVYDMNDLFDIDFTMTKAERLDFGESL MTHAMVLTGVDIVDGQTTKWKVENSWGEKVGENGFFVMSDAWMDEYTYQIVVHKDLLTDE QKKAWEQAPTVLAPWDPMGALA >gi|308151725|gb|GL476297.1| GENE 121 120726 - 121115 437 129 aa, chain + ## HITS:1 COG:CAC0599 KEGG:ns NR:ns ## COG: CAC0599 COG1725 # Protein_GI_number: 15893888 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 124 1 125 125 104 44.0 4e-23 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELVPNESLPSIRQLADEIGVNMMTVSKAYNKL KQSGYIVTDRRNGTKIAAKLPATAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKIYQ NFDSKGRAL >gi|308151725|gb|GL476297.1| GENE 122 121115 - 122485 1036 456 aa, chain + ## HITS:1 COG:no KEGG:EF0300 NR:ns ## KEGG: EF0300 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 456 1 456 456 822 98.0 0 MAVFFYFILVSVAFFMAFTMGIYANPHKNIILENTLPEDKLQDPSVQAIRKRYKKRLVQL AAVFSVLSLPLLFIPYDSILLFLFLLLLFSFIGSGYYLQIVYIRKMAALKMQNGWLLPKR PLLIDTQLVLNKNQKLISFWWFLPAIILTFAGGFYSLQTAIGSWILFLITVLMLSLFIGG YYFIARLPVKPLTSDSKINQQINDLFRHHWSVLMVLSALVFAPLTILPTLTIVIDYTVAM ALTFCYFILLFVYVGFLFYYLFSMRKKQDQFVLQAGDYRYGDDDQYWRYGIYINPKDPKT MVPDRIGMNLSINLGRPAGKIILAATGILTIAVLFFATVPMFINDFSSHAFQATIENKQI ELSAPLAKTRSIPFNQITAVSLIDDLPQERIRTMGAATDSYLTGEFKVAGKPAYLLIYTK SHPILKIETREKVYYYTAREGQETTKIYQEIKAKLP >gi|308151725|gb|GL476297.1| GENE 123 122530 - 122736 299 68 aa, chain - ## HITS:1 COG:no KEGG:EF0299 NR:ns ## KEGG: EF0299 # Name: copZ # Def: copper transport protein CopZ # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 102 100.0 3e-21 MEKTVKIDGMKCDGCVQAVTEKFSGIDGVTNVAVHLADQTAVVTADREVSQDELNTTLAD TKFKVVSE >gi|308151725|gb|GL476297.1| GENE 124 122758 - 125244 3288 828 aa, chain - ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 817 1 814 818 941 63.0 0 MESKTFDIEGMSCASCAQTIEKATAKLPGMAKASVNLATEKLSVTYDQTEVTEEEIKEAV SDAGYKAISPAQQRTFAIEGMSCASCAQTIEKAVNQLSGVQQAIVNLATEKLVVSYDDHQ VTSAEIIKAVTDAGYQATEEVAAGATADQDREKKQKHIAEMWQRFWISAVFTVPLLYIAM GHMVGLPLPAFLNPMTHATTFAMVQLILTLPVLYVGREFFTVGFKALFKGHPNMFSLVAL GTSAAFVYSLYGTVMIFLGDTSFTMALYYESAGVILTLITLGKYFEAVSKGKTSDAIKKL MGLAPKTAHILRDGAEIEVPVDAVQLDDIVIVRPGDKIPVDGVIVSGSSSVDEAMLTGES LPVEKKVGDAVIGASINKNGSFQFKATKVGKETALAQIIQLVEDAQGSKAPIAQLADKIS GVFVPIVIGLAILSGLAWFFLGQESWIFALTITISVLVIACPCALGLATPTAIMVGTGKG AENGVLIKSGDALETTHKIQTIVFDKTGTITEGKPVVTDILVADSALSEAELLTLAASAE QGSEHPLGEAIVGAAKERQLPLAEGSDFSAIPGHGIRVTVNERVLLLGNIKLMKEEAIEL STFVQQADRLAEEGKTPMFVAKDGSFAGIIAVADTVKDSSQTAIARLHKMGIEAVMITGD NKRTAEAIAKQVGIDRVLSEVLPEDKALEVKKLQAEGKKVAMVGDGINDAPALAQADVGI AIGSGTDVAMESADIVLMRSDLMDVPTAVELSKATIKNIKENLFWAFAYNTLGIPVAMGV LHLFGGPLLSPMIAAAAMSFSSVSVLLNALRLKGFKPSTVKKTSGSQK >gi|308151725|gb|GL476297.1| GENE 125 125260 - 125700 423 146 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 144 1 139 144 100 35.0 1e-21 MAKDKLATITDAEWEVMRVIWTQGKTTSREVHTLLNEKKEWKSTTVKTLLSRLTDKGLVG TEKVGNKYIYYPLVEERRSVETVADELLAKVCSRKVGSVVETILTESQLSYDDLDRLEEL LKEKRKTAVESVPCNCIPGQCQCHLI >gi|308151725|gb|GL476297.1| GENE 126 125829 - 126992 1460 387 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 7 384 7 379 379 239 43.0 8e-63 MEFLGILCLILITTTLAGVACKRVGIPAVIGQLLVGIVLGPAMLNIVHQDVFVHDFSEIG VIMLMFIAGMECELELLKKYAKPSVMVAILGIVLPVGFTMLIGQLFAFSWKEAFFLGLVL AATSVSISVEVLRELNVLSSKEGATILGASVVDDIVVVIILSVAVGMIGASTGGNTEVSF IVKLIEQGLFFIGIFFLVRFIAPYLLRLSQKMNIGSSVIIMSLIICLGMAYLADLVGLSS VVGAFFAGIAVGQTDAKTEIDFNIEAIGYAVFIPVFFASIGLSVTFNTLGKDLPFILVMT IMAILTKLLGGAWGAKMVGFSNTSSLMVGAGMVSRGEMALIIAQIGYQSKLLSEAYYTSM IVVIILTTLVAPFLLKYFVKKQESALQ >gi|308151725|gb|GL476297.1| GENE 127 127013 - 128380 1069 455 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 2 455 5 445 445 285 41.0 1e-76 MKHQIKKRLYISPVQTIVLGFFLLIVVGTILLMMPFSAQAGQKTQWIDAFFVATSAVCVT GLSPLNTAEHWSPIGQVIIMILIELGGLGFLTVATIFFSLLRKKASLSVRMLYQEALNVS EVSGVFRLMKYIMKFAAIIQLLGAFLLSFQFVPTFGWKKGLFFSLFHAVSAFCNAGFDLL GDSMVPYQNSPYLLLVISFLIIAGGLGFIVWRDIFAMIKGYKNKIKHRVSIHTRLALTVT ATFLVLGTVIFYISEYRHFPADMSFWQRLVNSWFLSVTPRTAGFYSVDYLKMSNPGLIVT ILWMFIGGTSGSTAGGLKTTTFGVLFLQFRAIFKGKQRVEFHERTIPERVVLQAFTLFFL ATFLCVTASVILSFTETLPLKNGIEYIVFEVISAFGTVGLTMGLTPDLTVFGKLVIIFLM FVGRVGVYTVLLSLIKKGLESQSKVQYPKESVMIG >gi|308151725|gb|GL476297.1| GENE 128 128512 - 129054 507 180 aa, chain - ## HITS:1 COG:BS_ywjB KEGG:ns NR:ns ## COG: BS_ywjB COG0262 # Protein_GI_number: 16080775 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 176 1 173 174 122 39.0 3e-28 MAREVILFIAASIDGFIADKAGGVAWLEENIRGDEEDRSYDEMYEKIDTVVMGRTTYDQV TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV VQPLLAADLIDTFILTTIPLFLGEGIALYETMAKSIPVRLKQVYQKNELVYSIYQRENKN >gi|308151725|gb|GL476297.1| GENE 129 129301 - 130029 666 242 aa, chain + ## HITS:1 COG:L17893 KEGG:ns NR:ns ## COG: L17893 COG1737 # Protein_GI_number: 15672394 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 241 2 241 248 208 42.0 9e-54 MFDLEKVQTLNELEMLVYHYVLEHLHQIPQQTIRQLATSCHVSTSTILRFCNKMGYAGFS ELKYAVKEEAKQTQTFENFYDATVHVDAFLKKLNQETYYEMLRPAIQMIVQARHVAFTGI GTSGILGSYGSRYFANLNINSYSIADPFTPIPKRGFENTLALILSVSGETNEMIKQMTDF KTAGAKVLSITNNQHSTIARLADYNISYYMPDERSPFADKSVNTTTQIPVIALIELLAHQ AS >gi|308151725|gb|GL476297.1| GENE 130 130236 - 131570 1231 444 aa, chain + ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 5 426 7 444 450 410 51.0 1e-114 MNEWINEKLLPPVLKFVNTKAITALRNGMLYTMPFTIVGSVFLLLANFPVTAISEWVNAS GLAVYFNQAYGASFAIMSLFAVIGIAYSYVKSEGFEGLPAGMIAMVVFILFMSSEVKDAV SGAVVGNVINKDWTAGKGMITAIIVGLLVGVVYSWFLRHDIRIKLPEAVPENVANSFTAL IPASVIVTGAMLIFILLDKVFNTTFFDFIYEVLQSPLQGVTDSLGGALLLGFVIPLFWFF GVHGSTIVGGIMGPILQANSLENTEILKSGKDLTLANGGHIVTQQFLDQFLTVTGAGMTI GLVVFMVFFAKSAQFKQLGRLSIGPAVFNINEPIVFATPIVMNPIMAVPFIITPIVSSVV TYFSLYTGLVPLFTAVQVPWTTPPIISGLLVGGWQAALLQVVVLTMSFFIYLPFAKKMDA LNYAEETNQPITEETLEKVEAQNV >gi|308151725|gb|GL476297.1| GENE 131 131597 - 133027 1439 476 aa, chain + ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 476 3 478 478 773 76.0 0 MSILKNDFLWGGAVAAHQLEGGWDQGGKGVSVADVMTAGAHGVPRKITAGVLPDEHYPNH EAIDFYHRYQEDIQLFKELGLNCFRTSIAWTRIFPNGDEETPNEEGLRFYDALFDECLKN GIEPVVTLSHFEMPYHLVTNYGGFRNRQVIDFFVKFAEVCFTRYQKKVKYWMTFNEINNQ ANYEEDFAPFTNSGIAYQEGEDREAIMYQAAHYELVASARAVKIGHAINPDFQIGCMIAM VPIYPYSCNPEDMMMSVSAMQKRYWFTDVHVRGHYPSAIQCYLKRKNISLDVTEEDLTDL ANGCVDYIGFSYYMSFAVKGAEKAPTFDYNEAKDLVRNPYVATSDWGWQIDPMGLRYAMN WFNDRYELPLFIVENGFGAIDELEPDGTINDTYRIAYLREHIEMMKEAVAYDGIDLMGYT PWGFIDLVSASTGEMKKRYGFIYVDKDNDGHGTLERRKKKSFAWYQQVIATNGEEL >gi|308151725|gb|GL476297.1| GENE 132 133064 - 134200 1590 378 aa, chain - ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 5 377 6 378 380 530 71.0 1e-150 MKFNTKLIHGGISKDTTTGAVSVPIYQTSTFEQNGVGQPKEYEYSRSGNPTRHALETLIA ELEGGSHGFAFSSGLAGIHAIISMFGPEDHILLGDDVYGGSFRLLDKVFVANGLSYTIVN ASDLSTIEAAIQPNTKALFLETPSNPLLKITDIEAAAKLAKKHQLLTIVDNTFATPYFQR PLALGADIVVHSGTKYLGGHSDVVSGLVVTNNPESAEKIAFLQNAIGAVLGPHDSWLVQR SLKTLGVRMAAHAQNAQKIAEFLEAHPAVATVYYPGLASHPGHEIAQKQMSGFSGMISFE LAKDEQVVPFVEALEIFTLAESLGGVESLIEVPAIMTHASIPKENREAVGIKDGLIRLSV GIEAVEDLLADLEKGLQA >gi|308151725|gb|GL476297.1| GENE 133 134214 - 135131 1087 305 aa, chain - ## HITS:1 COG:HP0107 KEGG:ns NR:ns ## COG: HP0107 COG0031 # Protein_GI_number: 15644737 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Helicobacter pylori 26695 # 1 304 2 305 306 394 67.0 1e-109 MIAQSILDTIGATPLFEFTSEQYPMPEGTKIYAKLEYLNPGGSVKDRLGVHLLKEAMKTG KINQATTIIEPTAGNTGIGLALAASQLGLKTIFVVPEKFSQEKQQLMQALGAKIVPSPTE QGIVGAITSAQDLAKEIPNSYVPLQFENPDNPAAYYEGLGPEIVQDLGGKITSFVAGLGS GGTFAGVGRYLKEKNSKTQLWGVEPEGSILNGGPAHGHEIEGIGVEFVPPFLKQIPVDGF YTISDEDGFFWVKQLAKKSALLVGSSSGAAFAAALREARRLPAGSTIVTIFPDGSDRYLS KNIYS >gi|308151725|gb|GL476297.1| GENE 134 135221 - 135358 204 45 aa, chain - ## HITS:1 COG:no KEGG:EF0288 NR:ns ## KEGG: EF0288 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 71 100.0 1e-11 MTKKQASLFLETESCCCMVQNSAAYSFVMGKTSVISEKLPNTIPL >gi|308151725|gb|GL476297.1| GENE 135 135527 - 136087 837 186 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 258 74.0 4e-69 MIAASDLKAGMTFEQDGKLIKVMEASHHKPGKGNTVMRMKLKDVRTGSTTDTTMRPDEKV KKAHIDTKPVQYLYSQDDMAIFMDLETYEQYEVPTALIEEELKYLLENMEVKIQFYGEEV IGLTLPTTVILRVAETQPSIKGATVTGSGKPATMETGLVVNVPDFVEADELLEINTAEGT YLKRAK >gi|308151725|gb|GL476297.1| GENE 136 136442 - 137089 724 215 aa, chain + ## HITS:1 COG:no KEGG:EF0286 NR:ns ## KEGG: EF0286 # Name: not_defined # Def: fibronectin-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 215 1 215 215 419 99.0 1e-116 MNPTIQPYQFNIIKEQVAVLLNTYTSVNDATTVKTVQALCVEKINGLFPEEHPAVTILLD KVMDRRLTRARAEKYLDELKETVLPFKEPSTPQVTKVFRKVKKLKIPEWENMDLRNNTYV GWNDAGTQKKFILAYRENKLIGVHGTLSPTIVKGVCSICQTITNVSMFLATTKSGGDGTY TKKGNYICHDSDTCNQQLTQPEYLEAFMENVKAVK >gi|308151725|gb|GL476297.1| GENE 137 137131 - 138066 1122 311 aa, chain - ## HITS:1 COG:L192589 KEGG:ns NR:ns ## COG: L192589 COG0167 # Protein_GI_number: 15673534 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 311 2 311 311 438 67.0 1e-123 MDISVEFSGHKLANVLMNASGIHCMTIKEMDELAASQAGAFVAKTATPNPRQGNEEPRYF DTPLGSINSMGLPNLGIDYYLDYQIARQKEFPEELRFLSVSGMNYEENIAILKKVQESEY TGVTEFNLSCPNLPGKPQIAYDFELTEKLLTEVFQFFTKPLGVKLPPFFDIAHFDAMAEI LNKFPLVYVNSINSIGNGLYIDSDKEEVVIKPKGGFGGLGGEYVKPTALANVRAFAQRLK PEIKIIGTGGITCGKDVFEHLLCGATLVQVGTQLHQEGPQVFERLAKELQEIMVAKGYES IEEFRGKLKEM >gi|308151725|gb|GL476297.1| GENE 138 138244 - 138678 713 144 aa, chain - ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 2 142 4 143 151 197 71.0 6e-51 MKKVMTATEIMEMIPNRYPICYIDYVDEIIPNEKIIATKNVTINEEFFQGHFPGNPTMPG VLIIEALAQVGSILILKMDQFEGETAYIGGINKAKFRQKVVPGDVLKLHFEIVKLRDFVG IGKATAYVEDKKVCECELTFIVGR >gi|308151725|gb|GL476297.1| GENE 139 138680 - 139918 1522 412 aa, chain - ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 2 410 3 411 411 441 56.0 1e-124 MKRVVITGMGAVTPLGNTVKEFWHNLVDGKLGIGKITKFDSEDTGVALAGEVKEFDPSAV LERKEQKRMDLFSQYGLVAALEAWEMSGLTEATIDPTRLGVIVGSGIGGMTTLQDQVRVM DKKGAKRVTPFFVPMVIANMAAGNISIRLGAKGPSQTIVTACASATNAIGEAFRTIKYGL ADMMVTGGTEATICEIGIAGFAALNALNTTEDATRASIPFDKERKGFVMGEGAGMLILEE LEHAQKRGATIYGEIVGYGSNCDASHMTAPLKDGSGAAAAMEMAIAEAGITPEQIGYINA HGTSTPANDAAETTAIKRVFGERASQIPISSTKSMTGHLLGAAGGIEAIACVQTLQEGKA HPTVGYQVADPDCDLDYVTEGARDITADYTISNSFGFGGHNGVICLKKWEEN >gi|308151725|gb|GL476297.1| GENE 140 140216 - 140968 1026 250 aa, chain + ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 1 250 1 250 250 337 71.0 1e-92 MFLQNKNVVVMGVANKKSIAWGCAKALKDQGANVIYTYQNERMKKQVVKLADENDLLVEC DVASDASIQAAFETIKNEVGTIDGLVHAIAFAKKEELSGNVSDITRDGFLLAQDISSYSL LAVTHYAKPLLNPGSGIVTLTYLGSERAIPNYNMMGIAKASLETAVKYLAFELAADKIRV NGISAGAIKTLAVTGVKDYDQLISISNERTPDKTGVTIEEVGNTCAFLVSELASGVVGDI IYVDKGVHLT >gi|308151725|gb|GL476297.1| GENE 141 141067 - 141465 383 132 aa, chain - ## HITS:1 COG:no KEGG:EF0281 NR:ns ## KEGG: EF0281 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 248 97.0 8e-65 MQEAIITSTVDLTSGGCNACGLVEDTVYTLAMNGVDIPLDGLTVAHLVSAVVARNGFKQE LKMDMLDDEYILYRKEDTAVTFKEAYNHLSYDNGSEKIQSKNKLEDLPKLFEQVNQILTT VFGIGTVNFIIE >gi|308151725|gb|GL476297.1| GENE 142 141510 - 142445 1204 311 aa, chain - ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 1 310 1 310 314 392 69.0 1e-109 METKKSSGMFAVIAALIANILVAISKFVGFALSGSTAMMNESIHSVVDCSNQVLLLFGNK RASRGQSALHQFGEGRAKYFFSTIVATMLFFGGGALGVMEAIQKLLHPSHEVENVAIVIG ILIFGLLVEGSSLRVAMKEIKELNTEKLSLLKFLRESRHSEILIIFTEDFCAVIGLCLAL VGTLLTMVTGIAAFDAISGLLIGLLLMCAAIFLAKEFYSLIIGESVTATDLAKIKTAFDR ADVEKLIDVKTVHLGPTEILVAAKIDVVEPMEEDAPDVVNAIERDIRSKMPDKKIYIYIE VDDYDVNYVRK >gi|308151725|gb|GL476297.1| GENE 143 142588 - 143262 834 224 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 11 222 3 213 215 216 51.0 2e-56 MFENESLSFEEQTIIQAAERYVQQELANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCI LTALLHDIGDEKFNESEEAGLLKVQQWLEANNVSTEQTNHILSIIANMSFKGGNTGKTVT TLEGKVVQDADRLDAIGAIGIARVMAYSGNKGRLIHDPHKQPREQLTQEEYRNGEDTAIM HFYEKLLKLKEQMNTNYGRLLAEKRHQFMELYLEEFYQEWDGHR >gi|308151725|gb|GL476297.1| GENE 144 143275 - 143787 255 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 162 20 172 185 102 33 8e-21 MNNYQWYTEQWGKPTREDDLLFLLLTVGVFQVGLSWKAAAGKKVAFMKNFCQMKPEKVAA LLPDEVDRIVADPDMIRNRRKIEATIKNAQAILKVQEEFGSFANYLWQFVKNVPVLSIYE EAYQVPRTQFLSDNVAKDLKKRGFSFVGPIVTNMFLKASGIIQVEILNPE >gi|308151725|gb|GL476297.1| GENE 145 143800 - 144291 530 163 aa, chain - ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 3 162 2 152 160 157 51.0 1e-38 MAKKIYYAQQEWQNDHYYLGVTDAGLAFVGSANQSIEELKNWYPQAQLEASEKKTAPYKE ALISYLNQHSTTFACPIDIEGTPFQKEVWQALQEIPYGETITYQEISEKIGRPRAVRAVG TAIGKNPLLMVIPCHRVIGSKGQLTGYRGGLAMKQALLTFEQS >gi|308151725|gb|GL476297.1| GENE 146 144430 - 144996 322 188 aa, chain + ## HITS:1 COG:lin2345 KEGG:ns NR:ns ## COG: lin2345 COG2169 # Protein_GI_number: 16801408 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Listeria innocua # 3 185 2 184 184 190 48.0 1e-48 MKTTYRLTQKRWEAIQNNNTQFDGDFFYGVTTTKIFCRPSCPSRVPNKNHVLIFKTAQEA LTLGFRPCKRCQPTGQVVPNEEWVAQIKQFIDRHSAEPLSLDYLAQACHGSPFHLQRTFK EQTKQTPLAYLTSIRIRQAQELLLHSPLTIQQIAKKVGFQTAAYFATTFKKETGVTPSVY RSKNEPKK >gi|308151725|gb|GL476297.1| GENE 147 145014 - 145757 600 247 aa, chain - ## HITS:1 COG:L130660 KEGG:ns NR:ns ## COG: L130660 COG0596 # Protein_GI_number: 15673278 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 6 241 9 245 249 217 49.0 2e-56 MKNRTKSRWKKIVLGLGLFLVILVIGLTIFIKNSTYQATDSALKISQSATQEKNYDYYTN GQKNDTALIFYPGALVAPASYSEWAQEVATKGYDVYVVHFPLNLAVLAPNAAEQIIKDHP QQNFVLAGHSLGGVMASRFVAENEQRIKGMIYLASYPDEKGALNKQDLPVLSITATNDGV LNWTSYQKAKQFLPKDTQYVSIEGGNHAGFGNYGVQKGDNKATISNEQQQTEISQLIVAW LQSRPNK >gi|308151725|gb|GL476297.1| GENE 148 145979 - 146221 89 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307292471|ref|ZP_07572321.1| ## NR: gi|307292471|ref|ZP_07572321.1| hypothetical protein HMPREF9509_02758 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_02758 [Enterococcus faecalis TX0411] # 1 80 1 80 80 93 100.0 6e-18 MARKQRFIVKSMLLSFLILGVLSFIFKEYIFENVGLLRASLALIVFFIGEYIYLDYTLSN NRALLICSVLIFLLSASLLF Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:37:45 2011 Seq name: gi|308151724|gb|GL476298.1| Enterococcus faecalis TX4000 genomic scaffold Scfld199, whole genome shotgun sequence Length of sequence - 156991 bp Number of predicted genes - 152, with homology - 148 Number of transcription units - 75, operones - 39 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 4.7 1 1 Op 1 . + CDS 132 - 4982 4807 ## EF3188 hypothetical protein 2 1 Op 2 . + CDS 5002 - 5391 241 ## EF3187 cell wall surface anchor family protein 3 1 Op 3 . + CDS 5348 - 6082 1034 ## EF3186 hypothetical protein 4 1 Op 4 . + CDS 6087 - 6887 1014 ## EF3185 hypothetical protein 5 1 Op 5 . + CDS 6888 - 7646 1045 ## EF3184 hypothetical protein + Term 7667 - 7720 9.4 + Prom 7673 - 7732 5.2 6 2 Tu 1 . + CDS 7797 - 8831 1031 ## EF3183 cell wall surface anchor family protein, putative + Term 8863 - 8908 11.8 + Prom 8842 - 8901 2.1 7 3 Op 1 . + CDS 8936 - 9421 469 ## EF3182 hypothetical protein 8 3 Op 2 . + CDS 9405 - 10856 1039 ## EF3181 hypothetical protein + Prom 10877 - 10936 6.4 9 4 Op 1 . + CDS 10977 - 11474 509 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 10 4 Op 2 . + CDS 11499 - 12383 830 ## EF3179 hypothetical protein + Term 12397 - 12437 7.1 + Prom 12427 - 12486 2.7 11 5 Tu 1 . + CDS 12513 - 13649 1447 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 13655 - 13701 8.1 - Term 13634 - 13697 6.4 12 6 Tu 1 . - CDS 13702 - 14493 797 ## EF3177 hypothetical protein - Prom 14517 - 14576 3.2 + Prom 14560 - 14619 7.4 13 7 Op 1 . + CDS 14657 - 15040 384 ## COG3304 Predicted membrane protein + Prom 15044 - 15103 2.4 14 7 Op 2 2/0.278 + CDS 15129 - 15554 558 ## COG1959 Predicted transcriptional regulator 15 7 Op 3 . + CDS 15622 - 16242 898 ## COG2910 Putative NADH-flavin reductase + Term 16249 - 16308 21.5 - Term 16237 - 16296 22.3 16 8 Tu 1 . - CDS 16321 - 17529 1516 ## EF3173 hypothetical protein - Prom 17618 - 17677 8.3 + Prom 17623 - 17682 6.5 17 9 Op 1 5/0.000 + CDS 17721 - 18965 212 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Prom 18969 - 19028 4.8 18 9 Op 2 . + CDS 19079 - 20125 1578 ## COG0468 RecA/RadA recombinase + Term 20154 - 20205 1.9 19 10 Op 1 . + CDS 20231 - 20326 56 ## + Term 20353 - 20385 3.2 + Prom 20359 - 20418 7.2 20 10 Op 2 . + CDS 20522 - 22078 2185 ## COG1418 Predicted HD superfamily hydrolase + Term 22107 - 22161 17.1 + Prom 22149 - 22208 6.6 21 11 Op 1 . + CDS 22238 - 23035 974 ## COG1692 Uncharacterized protein conserved in bacteria + Term 23036 - 23094 5.1 22 11 Op 2 . + CDS 23124 - 23495 645 ## EF3168 hypothetical protein 23 11 Op 3 6/0.000 + CDS 23496 - 26072 3015 ## COG0249 Mismatch repair ATPase (MutS family) 24 11 Op 4 . + CDS 26104 - 28236 1927 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 25 11 Op 5 . + CDS 28261 - 28626 379 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 26 11 Op 6 . + CDS 28623 - 28814 174 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation + Term 28820 - 28871 3.1 + Prom 28854 - 28913 3.5 27 12 Op 1 . + CDS 28947 - 29384 565 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Prom 29445 - 29504 4.9 28 12 Op 2 . + CDS 29559 - 30530 1164 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 30532 - 30589 10.4 - Term 30526 - 30570 7.1 29 13 Tu 1 . - CDS 30582 - 31115 218 ## EF3161 hypothetical protein - Prom 31314 - 31373 8.2 + Prom 31319 - 31378 3.7 30 14 Tu 1 . + CDS 31398 - 31523 171 ## + Term 31632 - 31674 1.2 - Term 31806 - 31842 2.5 31 15 Tu 1 . - CDS 31875 - 32468 319 ## EF3160 hypothetical protein 32 16 Op 1 11/0.000 - CDS 32928 - 33578 809 ## COG0637 Predicted phosphatase/phosphohexomutase 33 16 Op 2 . - CDS 33593 - 36304 2157 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 36346 - 36405 4.8 34 17 Tu 1 . + CDS 36599 - 37312 707 ## COG2188 Transcriptional regulators + Term 37406 - 37469 21.4 + Prom 37579 - 37638 6.4 35 18 Op 1 . + CDS 37708 - 38361 612 ## EF3155 hypothetical protein 36 18 Op 2 . + CDS 38457 - 39155 760 ## EF3155 hypothetical protein + Term 39163 - 39207 7.1 - Term 39152 - 39195 6.1 37 19 Tu 1 . - CDS 39196 - 39645 719 ## COG1970 Large-conductance mechanosensitive channel - Prom 39874 - 39933 7.7 + Prom 39696 - 39755 5.5 38 20 Op 1 14/0.000 + CDS 39854 - 41122 1202 ## COG0612 Predicted Zn-dependent peptidases 39 20 Op 2 3/0.056 + CDS 41115 - 42419 1478 ## COG0612 Predicted Zn-dependent peptidases + Prom 42445 - 42504 5.1 40 21 Tu 1 . + CDS 42587 - 43453 841 ## COG1426 Uncharacterized protein conserved in bacteria + Term 43465 - 43522 5.1 + Prom 43469 - 43528 7.2 41 22 Op 1 . + CDS 43578 - 43790 169 ## gi|255970662|ref|ZP_05421248.1| predicted protein + Prom 43808 - 43867 5.2 42 22 Op 2 . + CDS 43889 - 44467 331 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 44502 - 44552 3.1 + Prom 44931 - 44990 4.5 43 23 Tu 1 . + CDS 45012 - 45728 460 ## EF3146 hypothetical protein + Prom 46081 - 46140 5.0 44 24 Tu 1 . + CDS 46269 - 46721 53 ## EF3145 hypothetical protein - Term 46748 - 46799 1.1 45 25 Tu 1 . - CDS 46855 - 47742 636 ## COG1737 Transcriptional regulators + Prom 48047 - 48106 13.8 46 26 Op 1 . + CDS 48152 - 49051 931 ## COG1023 Predicted 6-phosphogluconate dehydrogenase 47 26 Op 2 . + CDS 49064 - 50065 1005 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 48 26 Op 3 . + CDS 50080 - 51186 1059 ## COG0371 Glycerol dehydrogenase and related enzymes 49 27 Op 1 13/0.000 + CDS 51292 - 52035 871 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 50 27 Op 2 1/0.333 + CDS 52056 - 52928 1233 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 51 27 Op 3 9/0.000 + CDS 52950 - 53456 637 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 52 27 Op 4 . + CDS 53534 - 53986 751 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 53 27 Op 5 . + CDS 54010 - 55083 1209 ## COG1312 D-mannonate dehydratase 54 27 Op 6 . + CDS 55088 - 55741 818 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 55748 - 55785 3.1 + Prom 55808 - 55867 5.5 55 28 Tu 1 . + CDS 55908 - 56378 559 ## COG4405 Uncharacterized protein conserved in bacteria + Term 56382 - 56439 -0.1 + Prom 56380 - 56439 5.0 56 29 Op 1 . + CDS 56554 - 56772 415 ## COG4443 Uncharacterized protein conserved in bacteria 57 29 Op 2 . + CDS 56789 - 57673 1130 ## COG1561 Uncharacterized stress-induced protein 58 29 Op 3 . + CDS 57729 - 58034 488 ## EF3130 hypothetical protein + Term 58039 - 58079 7.4 - Term 58026 - 58067 10.1 59 30 Tu 1 . - CDS 58078 - 59559 1617 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 59636 - 59695 5.0 + Prom 59688 - 59747 4.4 60 31 Op 1 25/0.000 + CDS 59782 - 60396 839 ## COG0194 Guanylate kinase 61 31 Op 2 3/0.056 + CDS 60401 - 60703 526 ## COG1758 DNA-directed RNA polymerase, subunit K/omega + Term 60725 - 60772 8.3 + Prom 60769 - 60828 5.2 62 32 Op 1 4/0.056 + CDS 60858 - 63290 2770 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 63 32 Op 2 26/0.000 + CDS 63317 - 63811 625 ## COG0242 N-formylmethionyl-tRNA deformylase 64 32 Op 3 20/0.000 + CDS 63804 - 64745 1338 ## COG0223 Methionyl-tRNA formyltransferase 65 32 Op 4 3/0.056 + CDS 64751 - 66130 1413 ## COG0144 tRNA and rRNA cytosine-C5-methylases 66 32 Op 5 17/0.000 + CDS 66132 - 66881 778 ## COG0631 Serine/threonine protein phosphatase 67 32 Op 6 7/0.000 + CDS 66878 - 69034 2356 ## COG0515 Serine/threonine protein kinase + Term 69073 - 69112 -0.4 + Prom 69041 - 69100 4.1 68 32 Op 7 10/0.000 + CDS 69283 - 70176 896 ## COG1162 Predicted GTPases 69 32 Op 8 6/0.000 + CDS 70200 - 70853 956 ## COG0036 Pentose-5-phosphate-3-epimerase 70 32 Op 9 . + CDS 70850 - 71494 599 ## COG1564 Thiamine pyrophosphokinase + Term 71498 - 71549 18.0 - Term 71514 - 71564 6.0 71 33 Tu 1 . - CDS 71597 - 71785 318 ## PROTEIN SUPPORTED gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 - Prom 72017 - 72076 9.1 72 34 Op 1 9/0.000 + CDS 72070 - 72960 248 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 73 34 Op 2 . + CDS 72962 - 74194 1176 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 74260 - 74307 9.4 + Prom 74747 - 74806 4.4 74 35 Op 1 9/0.000 + CDS 74921 - 75751 303 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 75 35 Op 2 . + CDS 75753 - 76472 496 ## COG3279 Response regulator of the LytR/AlgR family + Term 76481 - 76526 3.2 + Prom 76538 - 76597 10.1 76 36 Op 1 9/0.000 + CDS 76684 - 77046 644 ## COG1302 Uncharacterized protein conserved in bacteria 77 36 Op 2 4/0.056 + CDS 77129 - 78805 2428 ## COG1461 Predicted kinase related to dihydroxyacetone kinase + Term 78834 - 78883 15.6 + Prom 78819 - 78878 6.0 78 37 Tu 1 . + CDS 78923 - 80959 2186 ## COG1200 RecG-like helicase + Prom 80975 - 81034 6.4 79 38 Tu 1 3/0.056 + CDS 81062 - 82063 1394 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme + Prom 82086 - 82145 4.0 80 39 Tu 1 . + CDS 82200 - 82439 406 ## COG0236 Acyl carrier protein + Term 82456 - 82494 5.0 + Prom 82628 - 82687 8.5 81 40 Op 1 44/0.000 + CDS 82736 - 83743 601 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 82 40 Op 2 6/0.000 + CDS 83743 - 84687 1081 ## COG4608 ABC-type oligopeptide transport system, ATPase component 83 40 Op 3 49/0.000 + CDS 84687 - 85649 1150 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 84 40 Op 4 5/0.000 + CDS 85677 - 86600 1100 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 85 40 Op 5 . + CDS 86629 - 88407 2444 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 88514 - 88567 12.5 + Prom 88647 - 88706 7.3 86 41 Op 1 6/0.000 + CDS 88737 - 89429 956 ## COG0571 dsRNA-specific ribonuclease 87 41 Op 2 1/0.333 + CDS 89450 - 93028 4521 ## COG1196 Chromosome segregation ATPases 88 41 Op 3 2/0.278 + CDS 93053 - 93880 1182 ## COG0561 Predicted hydrolases of the HAD superfamily 89 41 Op 4 . + CDS 93883 - 95211 1005 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 + Term 95339 - 95383 -1.0 + Prom 95258 - 95317 24.8 90 42 Op 1 . + CDS 95426 - 95911 692 ## COG3542 Uncharacterized conserved protein 91 42 Op 2 . + CDS 96031 - 96429 478 ## COG3607 Predicted lactoylglutathione lyase + Term 96438 - 96502 5.6 - Term 96424 - 96461 7.3 92 43 Tu 1 . - CDS 96509 - 97405 1187 ## COG1284 Uncharacterized conserved protein - Prom 97431 - 97490 7.0 93 44 Tu 1 . - CDS 98000 - 98500 468 ## COG1335 Amidases related to nicotinamidase - Prom 98529 - 98588 5.7 + Prom 98473 - 98532 4.2 94 45 Tu 1 . + CDS 98671 - 100941 2551 ## COG2918 Gamma-glutamylcysteine synthetase + Term 100950 - 100998 11.0 95 46 Tu 1 . - CDS 100918 - 101019 57 ## - Prom 101101 - 101160 6.0 - Term 101538 - 101577 6.0 96 47 Tu 1 . - CDS 101644 - 102096 585 ## COG5506 Uncharacterized conserved protein - Prom 102122 - 102181 5.0 + Prom 102198 - 102257 4.2 97 48 Op 1 11/0.000 + CDS 102281 - 103228 1061 ## COG4606 ABC-type enterochelin transport system, permease component 98 48 Op 2 10/0.000 + CDS 103225 - 104190 700 ## COG4605 ABC-type enterochelin transport system, permease component 99 48 Op 3 5/0.000 + CDS 104187 - 104942 274 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 100 48 Op 4 . + CDS 104981 - 105934 1240 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 105945 - 105982 3.2 101 49 Op 1 . + CDS 106377 - 108020 1755 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 102 49 Op 2 . + CDS 108042 - 109262 1336 ## COG2195 Di- and tripeptidases + Term 109264 - 109316 17.1 + Prom 109269 - 109328 3.0 103 50 Op 1 . + CDS 109348 - 109905 273 ## PROTEIN SUPPORTED gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase 104 50 Op 2 . + CDS 109940 - 110551 834 ## COG4493 Uncharacterized protein conserved in bacteria + Term 110614 - 110679 20.0 + Prom 110791 - 110850 4.5 105 51 Op 1 . + CDS 110916 - 111278 322 ## EF3076 cell wall surface anchor family protein 106 51 Op 2 . + CDS 111265 - 115545 2822 ## EF3075 hypothetical protein + Term 115566 - 115622 14.5 + Prom 115738 - 115797 7.4 107 52 Tu 1 . + CDS 116040 - 119924 3263 ## EF3074 hypothetical protein + Term 119966 - 120001 5.4 - Term 119924 - 119968 13.2 108 53 Op 1 . - CDS 120000 - 120536 622 ## COG0681 Signal peptidase I 109 53 Op 2 . - CDS 120598 - 121146 752 ## COG1268 Uncharacterized conserved protein - Prom 121191 - 121250 8.1 - Term 121232 - 121264 2.3 110 54 Tu 1 . - CDS 121307 - 121918 1045 ## PROTEIN SUPPORTED gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 - Prom 122096 - 122155 11.1 111 55 Op 1 . + CDS 122243 - 123046 777 ## COG2116 Formate/nitrite family of transporters + Term 123059 - 123104 9.2 112 55 Op 2 . + CDS 123119 - 123772 647 ## COG4912 Predicted DNA alkylation repair enzyme 113 55 Op 3 . + CDS 123782 - 124558 722 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 124564 - 124609 12.0 - Term 124552 - 124595 12.4 114 56 Tu 1 . - CDS 124603 - 125166 871 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 125196 - 125255 8.5 + Prom 125157 - 125216 5.8 115 57 Op 1 26/0.000 + CDS 125410 - 125715 512 ## PROTEIN SUPPORTED gi|229547505|ref|ZP_04436230.1| ribosomal protein S15 + Term 125723 - 125771 7.1 + Prom 125791 - 125850 3.1 116 57 Op 2 . + CDS 125902 - 128016 1685 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase + Term 128029 - 128078 6.4 + Prom 128108 - 128167 6.4 117 58 Op 1 19/0.000 + CDS 128198 - 129058 1021 ## COG1792 Cell shape-determining protein 118 58 Op 2 2/0.278 + CDS 129055 - 129564 488 ## COG2891 Cell shape-determining protein + Term 129587 - 129631 7.1 + Prom 129578 - 129637 10.3 119 59 Tu 1 . + CDS 129869 - 131317 1862 ## COG3883 Uncharacterized protein conserved in bacteria + Term 131338 - 131401 13.7 + Prom 131347 - 131406 8.2 120 60 Op 1 . + CDS 131495 - 132064 600 ## COG1309 Transcriptional regulator 121 60 Op 2 . + CDS 132105 - 132575 605 ## COG0394 Protein-tyrosine-phosphatase 122 60 Op 3 . + CDS 132664 - 132894 365 ## EF3057 hypothetical protein + Term 132904 - 132945 7.5 - Term 132884 - 132941 13.1 123 61 Tu 1 . - CDS 132942 - 133676 795 ## COG3764 Sortase (surface protein transpeptidase) - Prom 133790 - 133849 7.2 + Prom 133774 - 133833 7.3 124 62 Tu 1 . + CDS 133910 - 134695 663 ## EF3055 hypothetical protein + Term 134696 - 134743 6.1 + Prom 134717 - 134776 7.5 125 63 Op 1 . + CDS 134800 - 135426 691 ## COG3212 Predicted membrane protein + Prom 135488 - 135547 5.4 126 63 Op 2 . + CDS 135589 - 136164 583 ## COG3859 Predicted membrane protein + Term 136219 - 136268 10.5 - Term 136196 - 136267 16.6 127 64 Tu 1 . - CDS 136284 - 136646 386 ## EF3052 hypothetical protein - Prom 136696 - 136755 8.1 + Prom 136753 - 136812 5.5 128 65 Op 1 . + CDS 136872 - 137639 819 ## EF3051 hypothetical protein + Term 137651 - 137698 3.2 129 65 Op 2 . + CDS 137716 - 138267 442 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) + Term 138286 - 138333 13.5 - Term 138274 - 138321 13.5 130 66 Tu 1 . - CDS 138336 - 139088 530 ## COG1737 Transcriptional regulators - Prom 139144 - 139203 10.4 + Prom 139155 - 139214 2.8 131 67 Op 1 . + CDS 139260 - 140048 969 ## COG3394 Uncharacterized protein conserved in bacteria + Term 140065 - 140122 8.3 132 67 Op 2 . + CDS 140135 - 141229 562 ## EF3047 hypothetical protein + Prom 141253 - 141312 1.8 133 68 Op 1 9/0.000 + CDS 141376 - 141813 549 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 134 68 Op 2 . + CDS 141840 - 142316 602 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 135 68 Op 3 . + CDS 142362 - 143513 1247 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 136 68 Op 4 13/0.000 + CDS 143538 - 144311 1004 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 137 68 Op 5 . + CDS 144301 - 145119 901 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 145124 - 145174 13.0 - Term 145107 - 145168 10.0 138 69 Tu 1 . - CDS 145186 - 146841 1830 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 146933 - 146992 7.6 139 70 Op 1 . - CDS 147044 - 147154 67 ## 140 70 Op 2 . - CDS 147160 - 147501 442 ## COG5584 Predicted small secreted protein - Prom 147553 - 147612 8.6 + Prom 147633 - 147692 5.6 141 71 Op 1 1/0.333 + CDS 147808 - 148884 1242 ## COG1363 Cellulase M and related proteins 142 71 Op 2 . + CDS 148896 - 149210 509 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 149290 - 149333 -0.9 143 71 Op 3 . + CDS 149358 - 149813 710 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 149814 - 149876 19.0 + Prom 149824 - 149883 9.4 144 72 Op 1 1/0.333 + CDS 149917 - 150648 816 ## COG2188 Transcriptional regulators 145 72 Op 2 . + CDS 150663 - 151073 478 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 146 72 Op 3 . + CDS 151085 - 151828 932 ## COG0434 Predicted TIM-barrel enzyme 147 72 Op 4 13/0.000 + CDS 151831 - 152304 574 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 148 72 Op 5 13/0.000 + CDS 152326 - 153096 1154 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 149 72 Op 6 . + CDS 153080 - 153904 1012 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 153935 - 153975 1.1 + Prom 153912 - 153971 3.2 150 73 Tu 1 . + CDS 154008 - 154628 844 ## COG0073 EMAP domain + Term 154818 - 154852 1.5 - Term 154627 - 154664 8.0 151 74 Tu 1 . - CDS 154696 - 155994 1567 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 156030 - 156089 8.6 + Prom 156307 - 156366 4.2 152 75 Tu 1 . + CDS 156395 - 156874 527 ## COG1576 Uncharacterized conserved protein Predicted protein(s) >gi|308151724|gb|GL476298.1| GENE 1 132 - 4982 4807 1616 aa, chain + ## HITS:1 COG:no KEGG:EF3188 NR:ns ## KEGG: EF3188 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 1616 1 1554 1554 2585 99.0 0 MKKKIAVLLATCLLVQPFLSVSAWAIEGEQQTERTQTQPKTAETSTSEATKESSAHSIEQ SSMTESSAITEKVTTSSTETKPSEEQKQITLTFETTDQALFLNDAKSYQVVKEKNQPLRT EELPKWANSEENATFVGWSYQGKTYTNEELLQLEFSEDTQLTAVFKQKLTRMARAVSIDQ SIADTIAPADKTKVIVVPSPAGDGAAYKEYASTEAGLKEALFDLYQQGNNGDFTLYIGNN ITTSAATTAKVIPDTVTASNMTFYALQGKVNHLVITGNSADPISMDQTAPTGSKTLGFNQ NISFGSNITLRNLNYTGTNMYLNGYSLNLNGGSSGNGLTVYGGTDTGDVSGNPTLTVNST GTGTWNFYGGNQNGGNLAGNPTIVINNTRSGLNTLSGGANIGTVTGNTSLVVNDSGGRIA SIYGGGYGTNATNTANVTGNVSTKVAITNAATGFQLSTYYGGVQYGNIGGKVTNDISGYG RWYTAGQRFIGGSSRGDIGTNRATDGITTNLNTQLYSAGRADFEGGNQYSGTIIGDITNV VTARTNSAGGINDFNGGAGNNVSKFNKSQIGASNEATYDAYTPQQRAELAKSAAAFKVFG NISSKLVSGSFNNGAIYSTAAGRGGYIEGNTTIEVGTANGDGSLGGDGMAYSGAKPTSLD YSTTNKSRGNNSGWDIVGGGGYPASNDTWDIYIKGDTKTVLNNTIARWTYGGSFSGVVEG NTSNTLNGGIADTLEGTGYQAARVYGNGQTIVNNGQVDWFLSGGGWNDAKNVGNVGVTVY EGVINASMGASYGASGGHTITGNSDNRIYGGNFSGTPRTGANGFSGGITNAGSLLGNAKL LIDLRNYNGEFKLPGNTYITGGRPYGQNTTLGTDESNTITLNIFTKTGVESLNGASIYGD GGTNAAYTKNGKITMNIQAAGSSIGNLYATQYSNISGGKILRDVTANVQGAVSINGLSGG SSTDNFTNAIVNASSNKVAFNFGTNVDGTNNYQTEPLNATGLGVVNFTELNVTNGIKLMA NGGNIKNGVSATAANHSTTYNEFGSIHLSKNAGIGITNTANLISASKLTVQDHATLETIP GTGKVNIADFEAVDPTKDELLWIKPTTDTTALVDSTGTWFGNVKAYQVLTINPTVNNATK LTPTTFHGIEKATGKTFIGDNDVTKGANGYGIAIPGSIIDYEVETPGIVAGAGTISHDVK EVKAGNAPLTLQAWGTEVAGQKVQKGRLMIPTSSALTPTLSFLPDEVTGSWLHQGTVKSS EVGSAIEQIPEQKDTTPLSWKATNMNYSYQMKVQFSNKVELSGQSVIVTEDEAAQLTTVD KVIEMLGAKGRPFFKTSLKETDLPQIQAPLAEKTVSRTHDIQLEAGTSGDNLQNKTVHLV VVKNESVLAKDRSFALYATSAHLKLKEANGLTNSDELAQWTQATVIFADGRANQTPSLDS ATFQAIQQAKPEELAKTVPANYQFTEAGETLNKKVNVSISGELTLEKVPKTIDFGKQKIS AKPEVYWPTLSDDLVVQDTRGTESTPWKLNVQVTNPLTNGTDQLEDLSLVTDKGEFLLNK GDTVVTENEGSGSGSYTINQGWGAANQRGLKLSVPVEKQKVGEFKGTLSWSLVMAP >gi|308151724|gb|GL476298.1| GENE 2 5002 - 5391 241 129 aa, chain + ## HITS:1 COG:no KEGG:EF3187 NR:ns ## KEGG: EF3187 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 210 99.0 2e-53 MKKYLLLSCFLGLFSFCHSDTAFGEAAYENSGVVSFYGTYEYPTEESTTATSNSSTTTEP TKPADGGASSVLSSGVYESRQGRLPATGTTNQAPFIYLGISLITIGILFIKRRREDEKNS ISSSRDCRI >gi|308151724|gb|GL476298.1| GENE 3 5348 - 6082 1034 244 aa, chain + ## HITS:1 COG:no KEGG:EF3186 NR:ns ## KEGG: EF3186 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 405 99.0 1e-111 MKKTVLAVVGIVGFSGVLATQQAFAEDINVNYTSNGAITFEPDTDPTKPVNPTNPDEKVE PEDPTDPTGPKPGTAGPLSIDYASSFQFGAQKITSDTKDYYAQIQTFKDGTTGPNYVQVT DKRGTQEGWTLSAVQNAQFKTAQNEELVGAALSIANAGVTSIVDAAYAPTPTAAHTFVPG TEVELVKAEDGKGMGTWVYRFGKDATEGATAVKLNVPGKAIKLAKEYRTTLTWTLKSVPT NVGG >gi|308151724|gb|GL476298.1| GENE 4 6087 - 6887 1014 266 aa, chain + ## HITS:1 COG:no KEGG:EF3185 NR:ns ## KEGG: EF3185 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 457 99.0 1e-127 MKKTVVYSLLFGTMLLGATVPAEAATVVFDSEQSIVFTPSTDGTDPVNPENPDPEKPVRP VDPTNPDGPNPGTPGPLSIDYASSLDFGSNEISNKDQTYFARAQTYKNPDGSASELATAN YVQVSDLRGTNAGWVLKVKQNGQFRNAETLHKELTGATVAFTEPSVRSNATDVLPPTATA NIQLDAAGAETVVMQAPEKTGAGTWITLWGQAEKVTEKNQQGQQVNATITRAISLTVPGK TPKDAVQYKTTLTWLLSDVPVNNGGK >gi|308151724|gb|GL476298.1| GENE 5 6888 - 7646 1045 252 aa, chain + ## HITS:1 COG:no KEGG:EF3184 NR:ns ## KEGG: EF3184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 252 367 100.0 1e-100 MKKTKVMTLMATTTLGALALVPMSALAVDGGEYQTNGAIQFAPNTNPTNPVDPTNPDPDK PITPVDPTDPTGPKPGTAGPLSIDYASSLSFGEQTITSKNMTYYAETQKYKDNAGADQEG PNFVQVSDNRGTETGWTLKVKQNGQFKTEANQELTAAKVTLSNGRVVSASQSAKPTTAPA TIELNPTGAESVVMAAGDKEGAGTYLMSWGDSVDTAKTSISLEVPGSTTKYAKKYTTTFT WTLTDTPANTGN >gi|308151724|gb|GL476298.1| GENE 6 7797 - 8831 1031 344 aa, chain + ## HITS:1 COG:no KEGG:EF3183 NR:ns ## KEGG: EF3183 # Name: not_defined # Def: cell wall surface anchor family protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 344 14 357 358 603 100.0 1e-171 MLFGWIGVEAHASEFNFAVTPTIPENQVDKSKTYFDLKMAPGAKQTVEIQLRNDTDEDIT IENTVNSATTNLNGVVEYGQNGIKPDKTLRFNLKDYVEAPKEIILPKHSQKTLPLTITMP KDSFDGVMAGGITLKEKKKETTTSADQSKGLAINNEYSYVVAIILQQNETKVQPDLKLLG VKPGQVNARNVINVSLQNPQAAYLNQLHLINTVSKGGETLYQSDTEDMQVAPNSNFSYPI SLKGERLTPGKYVLKSTAYGVKDEKGTYQVKGANGEERYLYKWEFTKEFTISGDVAKELN EKDVTIKGTNWWLYLLIALIILALLLLIFFLYRKKKKEEEQQSE >gi|308151724|gb|GL476298.1| GENE 7 8936 - 9421 469 161 aa, chain + ## HITS:1 COG:no KEGG:EF3182 NR:ns ## KEGG: EF3182 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 219 100.0 3e-56 MRKKYLFLFSSLLIFTAVEIEPIQTLATPIYNPLEPTEEIQPKPESITPQEKSEPEQPAP TPPEDQKTTVPSEEKKPSPKKKDKPVEKPAMSKEKKKQTKETTAHPLQVNKDFVFPNGLG AGGDEESESYLAAVGYFLSGNGLYGKKMDVREVYDIDDVFK >gi|308151724|gb|GL476298.1| GENE 8 9405 - 10856 1039 483 aa, chain + ## HITS:1 COG:no KEGG:EF3181 NR:ns ## KEGG: EF3181 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 483 1 483 483 867 99.0 0 MMFLNKVDKRKIALFQLLENAPMLTESKETVMQELELSEFIVNKTVAELNADFIEFGLSE DFQIVSDGIFLTLNESGTETSATLIDCYIKESLRFAMFQDFFFQRFDSVNEFALEHFVSH TLAYKEFKELKKMLENYQITINKEFHLVGNETNLREVTTLVFLQLYQRDFSLYGKKVLEQ IRNFELFFSEKVHLNQRAGYAQAKCFHFLAVSLVRTQQQFYVEKKVDSQVLKQLAGDNQQ NVFDWLESLQIPEPQRTNEGNYLLLFLIAEEWLQVASAALCQRFAEIQQLNRDLLSYLKI QFQLSEEVLQGFEQKVTIVHFKLFHFPIEANYSYRKMDITYFAETYTEYFSASRQFIQEQ KTNPAVWDARQFLFYRYLLLMVDALPLKKVLAPITLCVDFSFGEAYNRMIQKNIEKITEW NIIFKAHVDESVQLILSDIHFVDWPEITQIIWLAPPRPVDWSHFIKTLSALRPHSGEENK KSS >gi|308151724|gb|GL476298.1| GENE 9 10977 - 11474 509 165 aa, chain + ## HITS:1 COG:BS_sigV KEGG:ns NR:ns ## COG: BS_sigV COG1595 # Protein_GI_number: 16079766 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 161 2 157 166 86 33.0 2e-17 MVFDGWKRKKQIRALETLVDTKYEKMYRIAFNYTHSKEDTLDVIQESFEKALKAIQKGPD INDFDAWFFRILLSVATDYWRKKKREAVHIEKDEHVLALLNNPQRSFLEIEEIINQLDSP NREIILLKFFEGFTLKEIALILDINENTIKTKMYRSLNELRSLLN >gi|308151724|gb|GL476298.1| GENE 10 11499 - 12383 830 294 aa, chain + ## HITS:1 COG:no KEGG:EF3179 NR:ns ## KEGG: EF3179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 526 98.0 1e-148 MEDFVKSVVKNFSKEYRQQPLPTDLQAEVKARFHKEKKRYTWLRFRNRSLQSSLVVACGF VLSVNLFPGFSEAARNIPVLDKIVQLVTIKTLTAKKQESEVNIDVPKIQTSQESSVADTL NKKYLKEAQTEFQQVKGQLFDGSRVSVTGDYEKVVDDRRFLVVKRTFTEIKGSSATTTKY DNIDKRANVVVSLPLIFKNDFYIDVISSEIKQQISDQMKNDSNKIYWSEKEDAPSDVQPF KKIKKDQPFYINGKHQLVIVFPQGEIAPYYMGTPEFVIPNQVIENELAAPNYLK >gi|308151724|gb|GL476298.1| GENE 11 12513 - 13649 1447 378 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 377 1 378 378 382 55.0 1e-106 MEKSEKISILQDVVKIKSVNGNEEEVAIYLQNLLKKYEIPSELVSYAPNRSSLVAYLGEN REKVLGFSGHMDVVSEGDESQWTFPPFAAHIERNKLYGRGATDMKSGLVAMVLAMIELKE KEVPLNGAVKFLGTVGEEVGELGAGQLTEKGYADDLSALVIGEPTNYNLMYAHMGSINYS VVSHGKEAHSSMPEEGINAINNLNEFITEANQQMAEVTANYENPELGRTIHNVTVIKGGT QVNSIPGQAALQGNIRSIPEFSNDQVIALLQKIVDELNKKEKHQLELTIDYNKIPVKAEK DSALIQAIQAQFDQPLPLVTSAGTTDLAEFTKSDNTFDCVVFGPGVTTTAHQVDEYVEID NYLDMIDKYQAIAKSYLN >gi|308151724|gb|GL476298.1| GENE 12 13702 - 14493 797 263 aa, chain - ## HITS:1 COG:no KEGG:EF3177 NR:ns ## KEGG: EF3177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 488 99.0 1e-136 MDLHLTVDLKKTKTLIDLADQAHLIIEQTTKLPKKEAAILFLLRDNQLVALGLAEEKATY KEVSFDHSILLKPTWDTELAYLAQAFLDDAKESGLTLEATPTTVKIPKSAVATVTNYKET VTFILERFGYSLFKKPAPKKARPAKARHKWTKEVSQIPFYIDTRQSKATVFWQKRNEMLI KAGATMMPEAPLNKDGSVGFSARFGEKLRDERKGQFKDFVTTEDIVLKSVNEVGLFLYFA GTNSWLELVDENGKTLNEWTVVE >gi|308151724|gb|GL476298.1| GENE 13 14657 - 15040 384 127 aa, chain + ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 119 2 130 143 95 44.0 2e-20 MKTLGNILWFIFGGFFGGLSWLFAGVIWCITIIGIPIGLQCFKLAGLSFWPFKKRVVYSD SGVSLVVNIIWLIISGLPLAIGHCISGLLLCLTIIGIPFGQQSFKLAKLALMPFGARVVS TNDFYFE >gi|308151724|gb|GL476298.1| GENE 14 15129 - 15554 558 141 aa, chain + ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 135 2 132 133 115 49.0 2e-26 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA NKNTLLKKPEEISLYEIYTAVELERDIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKME EELKSITLADVIHEIEVKRDK >gi|308151724|gb|GL476298.1| GENE 15 15622 - 16242 898 206 aa, chain + ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 204 1 208 213 192 50.0 3e-49 MKVAVLGATGKEGQLLLAEAKRRGMDVTAIVRNASKITDGTPTIEKDVYQLTTEDIQAFD VLISALGFPDVQDFPKSTKHLIEILTNQKTRLFVVGGAGTLYVDPEHTTQLKDTPSFPAE IQPLASAMGEALNLLKEAQNIHWTYISPAAMFDAEGPATGHYEVAGEELTTNSQGDSYIS YADYAVAMLDEVESNAHPNQRISVYQ >gi|308151724|gb|GL476298.1| GENE 16 16321 - 17529 1516 402 aa, chain - ## HITS:1 COG:no KEGG:EF3173 NR:ns ## KEGG: EF3173 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 402 20 401 401 457 99.0 1e-127 MSVVLGLLGLLGLLVSGGLTIKALIKKQPKKQYGYAALASAALFIGGVATTDSSPTLSLD AESIETDANGSATIKGEYDGNSKLTANGKEVKTKDKTFAYKVKLSDEKTQKITFVAEKKD TKVEKSVEVTPSKEFIASITDSEQELAKTEKALAYAEKQPSQKNYDEAATLVSSLSQEYE EYNDRLEKIKEAVPVDEAVTTAEKSKSKSDYQAAEKLVAAAPVGKEGFQQRLTTVQTAIA EKEKNEQLVASATAAVEKAEQEPTNEAYYYNEAIKQIDALNSPNQALTKRVAVVKTQLDA HKEKQRKEAEAQKLAAEKAQKEQAEAAAKAQAEAEAQQAAQAPAEVETAAAEAPSGNALI KGSRNGIYHVPGSRYYNRTTNPVAWFSTVEEAEAAGYRAPKQ >gi|308151724|gb|GL476298.1| GENE 17 17721 - 18965 212 414 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 268 406 759 898 904 86 38 8e-16 MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRS DLIVLCGGLGPTEDDLTKQVVAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLA IEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMFQQAARPLLIDAFPQEEQLIS RVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIF KGGFVTYSQETKENFLGISHELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDP LEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVMRGLDLLRRRIINKK >gi|308151724|gb|GL476298.1| GENE 18 19079 - 20125 1578 348 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 346 2 344 348 508 79.0 1e-144 MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRI IEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDT GEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGS INKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQG RENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEELPLDE >gi|308151724|gb|GL476298.1| GENE 19 20231 - 20326 56 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSEPIHIKQLSQTADYAAFVLKFKQFVTAET >gi|308151724|gb|GL476298.1| GENE 20 20522 - 22078 2185 518 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 518 3 520 520 608 73.0 1e-174 MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK >gi|308151724|gb|GL476298.1| GENE 21 22238 - 23035 974 265 aa, chain + ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 264 267 380 67.0 1e-105 MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGV DVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTF MVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQT NDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACIL EIDDQTGQAKMIEPIQISEDRPFQE >gi|308151724|gb|GL476298.1| GENE 22 23124 - 23495 645 123 aa, chain + ## HITS:1 COG:no KEGG:EF3168 NR:ns ## KEGG: EF3168 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 170 100.0 2e-41 MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQF AHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEK EGN >gi|308151724|gb|GL476298.1| GENE 23 23496 - 26072 3015 858 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 858 2 859 860 991 60.0 0 MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNAD DPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSK GLEAKANNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSG IPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSL SHIQKAVEYQPDYFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWL DRPLIQERQIKMRQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQL RTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDG YNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEG KYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAK TISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNP ETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIA GQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLF STHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPL LERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLL EMTPLDALNMLHQLQKRI >gi|308151724|gb|GL476298.1| GENE 24 26104 - 28236 1927 710 aa, chain + ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 710 1 651 660 679 52.0 0 MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDN GEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEE GSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLAL SHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLP EVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVH PTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLST EQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAPPVPES TSVAEETSAYETSSAAADSANHWETASNEQQIIAEETKITEVSDSEPSLRSSEAADEVFQ EEMKLHPEFDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFI IDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLE DFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKAN HYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH >gi|308151724|gb|GL476298.1| GENE 25 28261 - 28626 379 121 aa, chain + ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 3 113 5 115 189 95 45.0 2e-20 MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSP EALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGKKSAPRQFIQ P >gi|308151724|gb|GL476298.1| GENE 26 28623 - 28814 174 63 aa, chain + ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 1 63 124 186 189 79 53.0 1e-15 MTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLLK EFN >gi|308151724|gb|GL476298.1| GENE 27 28947 - 29384 565 145 aa, chain + ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 144 3 142 145 197 65.0 7e-51 MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYD AGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCIN AAALRFVPVADLEKEGYGEYLSLFK >gi|308151724|gb|GL476298.1| GENE 28 29559 - 30530 1164 323 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 318 1 317 318 462 75.0 1e-130 MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVY VIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVAN MIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAAN ALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGEL IGDAIKRIHENKPVSPLFGTKNK >gi|308151724|gb|GL476298.1| GENE 29 30582 - 31115 218 177 aa, chain - ## HITS:1 COG:no KEGG:EF3161 NR:ns ## KEGG: EF3161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 133 186 100.0 3e-46 MSLIAIKNNEKALIIFDSVLSLIIIIVLSVFYKKIVKKKKQAIFKSLLLAIGMFLFSIIL NLLFSRIPTPENQHYINEVRNVAPVLMALHTRLFSPIIEELLTRGIFMNLFFIKNTSRSV LCKIFFSGLFFGLSHGLLPSISMLFYCGMGWVLASTYYFCNNNLTYPLAIHLLLNNL >gi|308151724|gb|GL476298.1| GENE 30 31398 - 31523 171 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKITERPIVKILIKILMFALCFYAGIKFVDFIFPLVGFKQ >gi|308151724|gb|GL476298.1| GENE 31 31875 - 32468 319 197 aa, chain - ## HITS:1 COG:no KEGG:EF3160 NR:ns ## KEGG: EF3160 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 51 197 1 147 147 283 100.0 3e-75 MIEKKDFDTIRKAFLIYDTNFNNHMFTYTYQHRKTKKLLEMNVQFEAGNFMHLCGVDYYQ IDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTTGQKLQVIPLLEMLISPGVRICD GGKFYNLQYEKAIRSGKMIVALTCKENNKKYVPQSLLSLINQPRKSQSKSLTESHEVIKI SKSELNSTSVIEVYDKF >gi|308151724|gb|GL476298.1| GENE 32 32928 - 33578 809 216 aa, chain - ## HITS:1 COG:ECs1896 KEGG:ns NR:ns ## COG: ECs1896 COG0637 # Protein_GI_number: 15831150 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli O157:H7 # 4 209 5 208 219 198 51.0 7e-51 MTIGFIFDLDGVITDTAKFHYQAWKALADSLGISIDETFNETLKGISRMDSLDRILAHGH RENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLQQAQAQHIPCAVASASKNA PLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLK AAGIYAVGLSASQPLIGADMQVSEMTELSVDALLNR >gi|308151724|gb|GL476298.1| GENE 33 33593 - 36304 2157 903 aa, chain - ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 880 6 746 769 518 39.0 1e-146 MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIV ADFPADFFSPEETLALVPKAVIQAFAEQLNTPLLTAAEQAAAPNLLAAFEEKRQYLAWHL DYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQ VVENEDFVNAPDNQHIALKIGDTTDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQ QIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQ VTALSAKENKTVIEVCTNQSNLSVRETSLITGDFFEKEAITIQEEAEKIAQVVTVMAHQG TRYTLEKQVFVQASHAEQSWQVPFTPRDSFAAAAQESARAWQTLWQQANITVTGDLMSQK LLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTA KQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQ RHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGP DEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTSSADLAR MQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYK VAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQL AEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQNEL SICPNLPEHWQALAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEV HYQ >gi|308151724|gb|GL476298.1| GENE 34 36599 - 37312 707 237 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 2 235 5 237 237 228 52.0 9e-60 MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQ GKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAP VWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITV EPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL >gi|308151724|gb|GL476298.1| GENE 35 37708 - 38361 612 217 aa, chain + ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 217 2 232 232 182 51.0 1e-44 MKKKIMASLLVGSAVVGASLAPLSAQATTTGNTPVDVEFEGGTIEGLETSFDLIYLPTAF TFPATKISDDLSAIPQLRAISSSLYIGDLRGTKEGWHVTGEVKEMNNGTDKLSGGINFGL RASYAQYNDSQKGYVPSATLNGINIADDPTAPSFVGTTMNIGGGASTIVTASVGKGQGTW VSTLNDVSLNVTTPMQQLKKGAYTGTVTWNLVAGPSI >gi|308151724|gb|GL476298.1| GENE 36 38457 - 39155 760 232 aa, chain + ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 2 232 232 216 54.0 5e-55 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVSVGVEGGVLPDQGDNTGGSVDPDPT KPNTDFDLLAIPRSFNFPLTKINDDLSAIKENSTTYRALMVGDVRGTKEGWHVTGEIAEM KNGADKLDGQFNFGMTPYYALFYAGTGLYLGMSNQNGMSIADDPTAPSFVGTNMTIGGGA TTLINATVGKGQGTWSGRIDNMTLNVTTPYQQLKKGAYTGNITWNLVAGPSI >gi|308151724|gb|GL476298.1| GENE 37 39196 - 39645 719 149 aa, chain - ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 1 133 18 157 157 93 43.0 1e-19 MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDAL GALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSE DYLKEIRDLLAAQTPPAETVKTDSTFTEK >gi|308151724|gb|GL476298.1| GENE 38 39854 - 41122 1202 422 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 421 2 408 418 311 44.0 1e-84 MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKL SERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQ AGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEE TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVI EERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYY ASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYIL ALDNAGAWLEKEYLNQLMPQTMLTAEEWIARINAVTISEIQEVAKRLELQAIFFLEGETE ND >gi|308151724|gb|GL476298.1| GENE 39 41115 - 42419 1478 434 aa, chain + ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 429 1 427 428 451 54.0 1e-126 MIKKDYAQIKETLYTETLANGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIE VPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLD FVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIA EITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEET AADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVTVNLLLQLLFGNTSQNYLA LYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSL LKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETFIREEG LSRFYMYPKGETEQ >gi|308151724|gb|GL476298.1| GENE 40 42587 - 43453 841 288 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 285 4 299 311 99 27.0 9e-21 MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYA SAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSL IGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKPKESSQAPESSTQSSTPPSSSSEPEK KTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETQTT ALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR >gi|308151724|gb|GL476298.1| GENE 41 43578 - 43790 169 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970662|ref|ZP_05421248.1| ## NR: gi|255970662|ref|ZP_05421248.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02433 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01777 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00799 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01962 [Enterococcus faecalis TX1302] conserved hypothetical protein [Enterococcus faecalis 62] hypothetical protein OG1RF_12411 [Enterococcus faecalis OG1RF] # 1 70 85 154 154 115 100.0 1e-24 MLKIVNKKFNLITIFSIALLVMGFLIVGLQLYFYFIYGSKFLDSITLIGMINLGLGYYQL FLKKGKNISE >gi|308151724|gb|GL476298.1| GENE 42 43889 - 44467 331 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 187 484 668 904 132 40 1e-29 MNLPNKLTVLRIFMIPIFIIIVSVPMDWGTISFGDTTLAVTQLVGAIIFAVASFTDWLDG KIARAQGLVTNFGKFADPLADKMLVMTAFIVLVGQGKVPAWIVAIIVCRELAVTGLRLLL VEHGEVMAAAWPGKVKTATQMVAIILLFINNIPFSALHLPLDQIMLYACLIFTIYSGVDY FAKNKDVFKGSM >gi|308151724|gb|GL476298.1| GENE 43 45012 - 45728 460 238 aa, chain + ## HITS:1 COG:no KEGG:EF3146 NR:ns ## KEGG: EF3146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 238 426 100.0 1e-118 MGEAKVTKTFRLTELVASDLSCKDLFDELIAVLEILDVEVVNKKIVYFYKRNVKSKQEKL EVCFTRESILHLIGISYYDINERETSKSRMKSKYAIEFYRDFKRNKLNFSKCWVESTRKV KDKLQVLKYIKSIKTDVVRIGADGQLRTIPMTNTISTPKIGLGIGLYHDHPEFSIPRSCL NLAQDKEAKQHTSFRNACRCTKIWIYERTEQGTWKLEDRQEFFKKIQAEKSKKKRRKK >gi|308151724|gb|GL476298.1| GENE 44 46269 - 46721 53 150 aa, chain + ## HITS:1 COG:no KEGG:EF3145 NR:ns ## KEGG: EF3145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 150 1 150 150 211 100.0 9e-54 MSGDETKEIMNYEHFFTYKDIIISLLIFFGLLYVIRLESVTKYFSLVIVAIVWFNPILVQ LFDKHTITVSIVVTQMVMHFLFIPLFLLTLLIISITEKEDRLFCLPIIFSVFLVCSQATW LYEYNLLFRVVDIWMILMILFVRIKNINPE >gi|308151724|gb|GL476298.1| GENE 45 46855 - 47742 636 295 aa, chain - ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 288 5 280 282 151 33.0 2e-36 MKNHYLDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKK IGYSGFQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNAT QFLTKELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFV TKLTSEDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEE GLFRAESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS >gi|308151724|gb|GL476298.1| GENE 46 48152 - 49051 931 299 aa, chain + ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 282 47.0 6e-76 MDIGFIGLGKMGLNMALNVHEQGWPIIGFDVTKEARATAREQGLSVVDSLPELLKALNKR KVIFLSTPAGQITNQLVAELVEQLAPEDIIVDSGNSNFHDSVANAQLAKEKGIYFIDCGT SGGIKGAREGACLMVGGAPEAVKVLTPFFEDLACEQGYLYAGKSGAGHYLKMVHNGIEYV MMQAMGEGFNLLEAAEYDFALEKVADVWNHGSIIEARLMGLAKEVFAENPTLANLEGKVV ANGEAKWMIEEALRLEMPVPTTALSLFTRNESMLANHFSNKVVASLRQGFGGHEVVKSQ >gi|308151724|gb|GL476298.1| GENE 47 49064 - 50065 1005 333 aa, chain + ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 37 325 26 311 527 171 35.0 3e-42 MLKKQKIAIVNSSSFGQIFPEHLTRLEKIGTVKHFTVDSEIGGKELAECLQGYTIIIASV TPFFTKEFFEHKDELLLISRHGIGYNNIDLDAAKQHETIVSIIPALVERDAVAENNVTNL LAVLRQTVAADASVKADQWEKRANFVGRTLFNKTVGVIGVGNTGSCVVETLRNGFRCDVL AYDPYKSATYLQSYGAKKVDLDTLLASADIICLCANLTEESYHMIGSAEIAKMKDGVYLS NSARGALIDEEAMIAGLQSGKIAGLGTDVLEEEPGRKNHPYLAFENVVMTPHTSAYTMEC LQAMGEKCVQDVEDVVQGILPQRAVQEVSRYVS >gi|308151724|gb|GL476298.1| GENE 48 50080 - 51186 1059 368 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 4 361 5 358 368 250 37.0 3e-66 MLTDLKVKVGPQFYRYHEGALTSVPSLFKEYHAQRILVVHGTVSFEKAQPFLPFLADSEY QFFYHTYTGECSYFGAEQISQQIKEHQIDFLLGVGGGKLADLVGYSAHLNNLNFGLVPTL ASNCAPWTPLAVMYQENGAAEGKTEHFFRQAAFLITDPKLLLDAPRDYFVAGLADTLAKW YESETILRQAHLQGEPFLQLAGATAKLSQEAIMRDSKAALAAMDEGKLTPEFVHLSEIVF AVSGLVGGFGDKYARNAAAHAMHDAMSKFLPKSHDYLHGEKVAYGIFYQLALEKRWAIID ALIPFYQELNLPMSLRQMGLYPEEEAVLDAMVQFIDSKEKVHLIPIEISEERLRQGIEEL EKYIQNQG >gi|308151724|gb|GL476298.1| GENE 49 51292 - 52035 871 247 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 225 28 249 249 121 33.0 1e-27 MRFSPLMTGLVAGLVMGDVPKAMIVTAALQMIYMGVFSPGGSMPAEPSIAAAIAVPVALL GNLKPEAAIAVAVPVGLLGSYLYQFRFFINTFLGKYTDRAVAELNSKKIARSIIWYPTIA SFILFVPLVFFALYLGAPVIADIIKALEGTVVIHVLEVVGGGLAAIGIATTVYVIGRKDF LVFFFLAYFMSIVFKSLEITMVTYAIFGVIIALIFVQVQKGKPVAESAGSASATTDFDDD DDYDDGF >gi|308151724|gb|GL476298.1| GENE 50 52056 - 52928 1233 290 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 20 290 21 286 286 168 36.0 1e-41 MTETTEKVVPKTTNLAPEEITNKDVTKAYLRWHFANEIPHSFERYLAPSLLYAMMPLLKK LYKDDEQLKAAYMRQLLFFNTQLSWGGGVITGLMASMEQERAKEEHEGREIMMQDDLMYN TKAGLMGALAGIGDAIDSGTVQYIFIAIAVPWAQQGSALGAIFPFVAFALYQVLLGVFFA RQSFKMGRNATGLMQSAGIQKAIEMLSVLGLFMMGILAGNYVKVSSTLQFKLSGREFVVQ DILDQIVPGLLPLAVVMGVYWFYTKKGLKVTQALLWLTGILIVLATVGIL >gi|308151724|gb|GL476298.1| GENE 51 52950 - 53456 637 168 aa, chain + ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 4 151 3 147 164 66 30.0 3e-11 MGVVNLARVDERLIHGQVMVTLSQKSGVNSIFVVDKVVAKDKFMRDLYKSAGSRTGQKTI VITPEKAKFYWDEYQFKEYNCILIAKTVSVIYDLVKHGVPMKELNIGGIAQKNPEKDLLV TKSVYLNKEDAEKLKELHEVYGVEDIYFQATPSAPKTSLKEVLGKFNL >gi|308151724|gb|GL476298.1| GENE 52 53534 - 53986 751 150 aa, chain + ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 131 1 127 157 71 34.0 6e-13 MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDG VLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQ AIVAQGKESVQAWDISMTSFEDEEDEDDDF >gi|308151724|gb|GL476298.1| GENE 53 54010 - 55083 1209 357 aa, chain + ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 1 356 1 358 360 423 55.0 1e-118 MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYE NEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEE DLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPAN GITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAE LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKQNRK >gi|308151724|gb|GL476298.1| GENE 54 55088 - 55741 818 217 aa, chain + ## HITS:1 COG:VC0285 KEGG:ns NR:ns ## COG: VC0285 COG0800 # Protein_GI_number: 15640313 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Vibrio cholerae # 12 197 5 190 201 136 39.0 2e-32 METKVEKNQLYQQLATCKLLPLYTATDLRYLPQVESVLVENELPFIEVTFRSQLALPAIK QLAASGNLIVGAGTVRTLKEAQEAVANGAQFIVSPAIVPEVIDFCLANEVPIFPGTATPG EIQRALAYGLRVVKFFPADIYGGLKAIKSLSGPFYDVQFLPTGGIDETNFIEYVEAKEVL AVGGSFILSEKMLQEDEASARQHVQSLLTKIKERQAK >gi|308151724|gb|GL476298.1| GENE 55 55908 - 56378 559 156 aa, chain + ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 24 149 27 151 153 102 42.0 3e-22 MLKNVEVFWKNFLDKHELDMLMPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKM EEEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGEGDLTLDYWYEEH ARFFKEELAPYQLQFYPDMLLVCQSFEVVDLYTEKE >gi|308151724|gb|GL476298.1| GENE 56 56554 - 56772 415 72 aa, chain + ## HITS:1 COG:L114363 KEGG:ns NR:ns ## COG: L114363 COG4443 # Protein_GI_number: 15672295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 69 1 69 72 84 62.0 6e-17 MKEEFSYEILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNE EFAELSKTIKSM >gi|308151724|gb|GL476298.1| GENE 57 56789 - 57673 1130 294 aa, chain + ## HITS:1 COG:lin1942 KEGG:ns NR:ns ## COG: lin1942 COG1561 # Protein_GI_number: 16801008 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Listeria innocua # 1 294 2 291 291 181 37.0 1e-45 MKSMTGFGKKTIQNENYQLDIEVKSVNQRFLDIQLRMPKELNAYELVIRQVIKRTLKRGR VEVYVNLQKIGNNQKEVRVQWDLIDQLLTSVDQHLKENYPEATFDAGDTVNHLLKQNDFV EIVEAEIVDQTFEPFLVQAFEAAIASLDQSRVQEGTQIKQVLLDYVAVLTQSIQELQAFV GVFEQEYRQRFEAKLNEWLGSQVDETRLLTEMAILLEKGDIHEELDRLDIHIDKLHQLLD ETEPVGRELDFLIQEMNREVNTIGSKSSPIEIKNSVVQMKTTLEKIREQIQNVE >gi|308151724|gb|GL476298.1| GENE 58 57729 - 58034 488 101 aa, chain + ## HITS:1 COG:no KEGG:EF3130 NR:ns ## KEGG: EF3130 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 181 100.0 9e-45 MTEVKAMTKFYDVTFQELSGRSVVKTEVASDREPFDVWQDACASYSETELNIQINEDTFV TLNRHFVVRIDVKEVDGPVDKQVRRRDELMNVVNTLSNMGL >gi|308151724|gb|GL476298.1| GENE 59 58078 - 59559 1617 493 aa, chain - ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 33 415 20 400 431 229 37.0 8e-60 MNKKGLRNIARIKPFTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPK AAIVVDADSGEILWSQQPDSAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDI SKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAE LGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITN KPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLI EVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGV VPKGSQPTFKLVAGQVQVDTPLTLLNSTVQAPKVAYQEVKPKQTTAEAAEESNEHSGDTT VAEPNHFIPKSIATSVLVLFGLIFSVITRQLQKRLERQKKHGKESSKTASMRTIFLSAAV LSFLCAVGLFLLF >gi|308151724|gb|GL476298.1| GENE 60 59782 - 60396 839 204 aa, chain + ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 286 72.0 2e-77 MSERGLLIVLSGPSGVGKGTVRKAIFDSEENDFQYSISMTTRKQREGEVDGVDYYFRSRE EFEAMIEAGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGAKQVKDKVPDGVF IFLTPPDLAELKSRIIGRGTDEMSVIEERMAVAREEIEMMALYDYAVVNDEVPLAVQRIK DIIASEHFRVDRVIGKYIKMLEEM >gi|308151724|gb|GL476298.1| GENE 61 60401 - 60703 526 100 aa, chain + ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 81 1 79 104 73 61.0 6e-14 MMLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV ISDPNPEEKRERLRIEREERKRQREQEQKELENRLRDEKN >gi|308151724|gb|GL476298.1| GENE 62 60858 - 63290 2770 810 aa, chain + ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 806 1 793 797 868 54.0 0 MQKVAKVIVDVPTMQTDQPFTYLVPENLNEQLAVGMRVEVPFGNGNRHVQGFVLAIEPVA ATVLDETNVQLKELVAVLDLKPVLNTEMLALADYMKEKTFAFKITCLQTMLPSVMRADYQ KYIYLTDELSEELQDQLFYGLEEISWDQAQERGLLPQLMALRKQQKVDIRYEVTTRNKVK MVRFIQAAKEFEQLEEIRLGLRKGAKKKEQLLYYLQRLGTEKITAVKEMKELGFSTALLN EAAKNGWLTFIEKEAYRDPFANQTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEG ITGSGKTEVYLQVIAEVLNQGKTAIMLVPEISLTPQMVQRFKSRFGEHVAVMHSGLSQGE KYDEWRKIERGEAEVVVGARSAIFAPIENIGVIIIDEEHEASYKQEETPRYHARDLAIWR SEYHHCPVVLGSATPSLESRARAQKNVYQRLRLTQRANQAATLPTIDVVDMRQEVENGNV SSFSMSLQEKLQERLEKNEQSVLLLNRRGYSSFVMCRDCGYVLPCPNCDISLTLHMDSKT MKCHYCGHEERIPYRCPNCGQDKIRYYGTGTQKVEEELQTLLPDSRILRMDVDTTRRKGA HEKILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQ VSGRAGRAEKPGEVIIQSFNPEHYAIQLAKAQDYEDFYTKEMYIRHRGDYPPYYFTVQIT ASHPEENEAAKQMFQIATKLKQGLSPQAILLGPTPNAIMRVNNRYFYQVIIKYKQEPMLQ PLLKEILTDTQRATARGLKLSIDAEPMNFI >gi|308151724|gb|GL476298.1| GENE 63 63317 - 63811 625 164 aa, chain + ## HITS:1 COG:BS_def KEGG:ns NR:ns ## COG: BS_def COG0242 # Protein_GI_number: 16078635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 5 159 6 159 160 136 51.0 2e-32 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI EIDEESGHFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVT AYGYLARAFQHEIDHLNGELFIDKMIEKIAPEDLEAYMEEHFDD >gi|308151724|gb|GL476298.1| GENE 64 63804 - 64745 1338 313 aa, chain + ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 338 56.0 7e-93 MTKIVFMGTPAFSVPILESLIEAGYDVQAVVTQPDRPVGRKKVITPTPVKEAALKHNLLV LQPEKISGSPEMEKVIDLAPDLIVTAAFGQFLPEKILKAPKLGAINVHASLLPKYRGGAP VHYSIIEGEKETGVTIMEMVKKMDAGAILAQRAIPITKQDDVGTMFEKLSILGKELLLET LPKLIAGEITPIPQVEEEATFSPNIAREQERIDWQKTAEAIDNQVRGMRPWPTAFTTYQG TNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLN GVGQNVAEKDKVD >gi|308151724|gb|GL476298.1| GENE 65 64751 - 66130 1413 459 aa, chain + ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 11 452 4 448 450 418 49.0 1e-116 MAEKIPKKLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKSELSEKDGRLFTELVYGTI SRKLLLEYYLTPFVKKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKRRGNP GIGKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLS LFEKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCL TIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKL INENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTA NDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVA NENVQAVVKEQELVLYPHQYMTDGFFICCMRKVSSNEVK >gi|308151724|gb|GL476298.1| GENE 66 66132 - 66881 778 249 aa, chain + ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 247 1 246 246 216 45.0 4e-56 MEINVQSDVGRKRNTNQDYANVFENQQHITFAVLADGMGGHQAGDVASQMAVNNLGESWS NASVDSAEKSAQWLIQAIQKENEKIYERGQSKPEYLGMGTTVVGAILLPDSFVLANVGDS RAYLVRDQHMLQLTEDHSLVNELVKSGEITREMAANHPRKNVLTRSLGMPGTVEVDVTNH EWLPNDYLLLCSDGLTNMVPETKILEILETSDPLESKLSQLVAQANEAGGLDNITVLVIH FDEQKEENQ >gi|308151724|gb|GL476298.1| GENE 67 66878 - 69034 2356 718 aa, chain + ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 4 282 3 281 342 388 70.0 1e-107 MIEIGKKLNGRYHIIGSIGSGGMANVYLAHDLILDRDVAVKVLRFDFQNDQAAIRRFQRE ALAATELVHPNIVSVYDVGEEDGLQYLVMEYVKGMDLKRYIQTHFPIPYSTVVDITQQIL SAVAMAHEHRIIHRDLKPQNILIDEHGTVKITDFGIAIALSETSITQTNTMLGSVHYLSP EQARGSMATNQSDIYAVGIILYEMLTGNVPFDGESAVTIALKHFQEEIPSVKMFDPGIPQ SLENVVRHATAKDPSDRYKTANEMAEDLYTSLSASRLNEPAWEPTALLGETKVLTPIPED IAEPEETTPVEVPEDIADDILAEQPPKKNRKKLWIGLAIAALIALAIGGLAFAMSGGKDV EVPDVTNETKAAASQALQSAGLKVDSETKKIPDDKIEEGKVVKTDPEAKSSVKKGRSVTL YISSGTEKIEMADYTNESYESAVEALKKLGFSEDQITTKKEYSDSVSTDSIIKQKPAAGK KVDPKKDKVTLTVSEGPEAVTLPSYAGYSYTNAVNALAQLGISESQITRVDQASDTVEPG LVITQDPAPGGTVTPKNGQVTLYVSKGSDKVTLSDYSGISYDNAVSRLIALGIPESQIKR VDEESDKVEKDTVISQEPASGTAVDPKNDTITLHVSKGSDSVTVPDISGYSPKAAEDSIN NAGLKINEQGLSGSGDGQVVERTSPSAGSKVKKGDSVTVYYSKVNDSKSTTSESSTSN >gi|308151724|gb|GL476298.1| GENE 68 69283 - 70176 896 297 aa, chain + ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 2 291 291 329 53.0 3e-90 MVYLKGQIRKALSGFYYVYADGETYQTRARGNFRNRKITPLVGDEVLFESDNLTDGYVLE ILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRFLVSLEYKDIEPVIYLTKVDLLD EPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFPERLTVFMGQSGAGKSTLLNQIS PELQLATAEISQSLGRGKHTTRHVELIPLYDGLVADTPGFSAIDFLEMEAVELPKQFPEF VAAASHCKFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENRRPVYKKKS >gi|308151724|gb|GL476298.1| GENE 69 70200 - 70853 956 217 aa, chain + ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 3 216 218 272 64.0 3e-73 MKLAPSILSADFANLERDIRLVEELGADYIHVDVMDGQFVPNITLGPNIVSAIRPVTKLP LDVHLMIVQPENYINAFAEAGADIITVHQEATPHIHRALQMIKNAGVKAGVTINPGTPLS MIENVLDLADQVLVMTVNPGFGGQSFIENSLEKIAQLKEWKETKGYTYEIEVDGGIVPET AARCKEAGAEVFVAGSYIYNAENPQERIDALRAVLDK >gi|308151724|gb|GL476298.1| GENE 70 70850 - 71494 599 214 aa, chain + ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 1 213 1 208 210 174 45.0 8e-44 MSRVLLVAGGNPSDWPTIEPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHF VQETAETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPR FQGVLRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQD VPYPTSYASNEFIEEAAAFSFDAGMIAVIQSKDK >gi|308151724|gb|GL476298.1| GENE 71 71597 - 71785 318 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 [Enterococcus faecalis V583] # 1 62 1 62 62 127 100 4e-28 MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIE RV >gi|308151724|gb|GL476298.1| GENE 72 72070 - 72960 248 296 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 247 11 257 312 100 28 5e-20 MSLEIKKLKKKMNEQEIIKGINLTIPEGEIYGFLGANGAGKTTIFRHILGIYSPDEGEIT WQGRKVDRFDAKEVGYLPEERGLYPKRTVRQQLTFFGKLRKMKKKEIEKSILFWLDFFKI QKNVDRKISELSKGNQQKIQFIASIIHGPKLVILDEPFSGLDPINANQLKEAILFLKENS ATIIFSSHQMANVEEICENICMMKKGEVLVEGNLKEIKDETDKRKVIVQADFDREILKQD FEIESYKEENDVISFYVKDECTAKKIQKFIFQSENIQQFRIEPISLNDIFLERVGE >gi|308151724|gb|GL476298.1| GENE 73 72962 - 74194 1176 410 aa, chain + ## HITS:1 COG:BS_yhaP KEGG:ns NR:ns ## COG: BS_yhaP COG1668 # Protein_GI_number: 16078054 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Bacillus subtilis # 11 406 11 418 419 164 30.0 2e-40 MKNIVTIALETYKQKVVSKVFVIILLVLMVGTFLGMNYEGILKKEEPSKETILVVSNNQE TVTMLKEVGKGTNLNFVDGGQKLSDAEKELKDRASKTILKIEKSSAGLYEGKIYYEGALQ YNVSEQLQSLVTTVNQSIKLNQLNIDAAQQQFLNESTRLSLESLAGNQDNSVQTLILVYI VGFILYIAVMLFSTMVAQDIAVEKSSRVMEILLTTITPVQHLIGKIVGIGLVGVTQAAAI FGAAYASYGIFGDSTGVFDFLSEGKNSQAIILAIICFVLGYLLYSVTAAILGSVVSSVQE VQQLMYILIIPLFIAMFMVMILAAGLGSNQATIISSYIPYLSPIVMYARYMLGDASLNAF AVAMGINLVFTAILAFLGKSVYQGGVFIYSGDKLINVFKKAFKSGKYYVR >gi|308151724|gb|GL476298.1| GENE 74 74921 - 75751 303 276 aa, chain + ## HITS:1 COG:lin0043 KEGG:ns NR:ns ## COG: lin0043 COG2972 # Protein_GI_number: 16799122 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 1 269 162 430 431 151 31.0 1e-36 MIIYYTSLILGKYLGNNKEIIVVNSIFLTLYLVVSLISFIVYLSSLKNKYDIQQKGTEYL ENQRYMEAMEKQFKEIRKFRHDYKNILNSLEDFIVSGDYESLNDYYFSKIKKASKCIDQN GFKLEAIGNIRVREVKSLLVSKLISTQEKGMDVQLEVTEPIEELAIDSISLVRILGVFLD NSIEEIEFLGEGKLVIAVYKDASAVHIIIQNSCRKNLPKFHLLKQRGFSLKGTDRGMGLS NVQELLQSLNNVQLATSISDGWFTQKLTIENNRRCE >gi|308151724|gb|GL476298.1| GENE 75 75753 - 76472 496 239 aa, chain + ## HITS:1 COG:CAC0081 KEGG:ns NR:ns ## COG: CAC0081 COG3279 # Protein_GI_number: 15893377 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 239 1 239 241 204 45.0 1e-52 MISIIICEDDWRQRQMLETYVKNYIMMESLDMELVFSTGNPLEVLEFVKSQSRIIGLYFL DVDLQHEMSGLTLAAKIRDYDNLGKIVFVTTHGELSYLTFTYKVEALDYIIKDNKEHLQQ KICENIQLAHERITSERGDTKKLFKFKDGDTIRSVDMTTIIFFESSSVSHKIVLHLENGE IEFYGSLKEIEEQSNDFYRCHKSYLINRKHISKVIKSERIVEMSNGERCLVSVRAMKNL >gi|308151724|gb|GL476298.1| GENE 76 76684 - 77046 644 120 aa, chain + ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 142 64.0 1e-34 MAVKIQTPAGTIEITNDVIATVVGGAATDIYGIVGMASKNQIKDNLNDILRRENYSRGVV VRQEDNGIAVDVYTIVSYGTKISEVSRNVQEKVKYNLETLLGVTANSVNVFVQGVRVLPD >gi|308151724|gb|GL476298.1| GENE 77 77129 - 78805 2428 558 aa, chain + ## HITS:1 COG:SP0443 KEGG:ns NR:ns ## COG: SP0443 COG1461 # Protein_GI_number: 15900360 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 558 1 555 555 644 62.0 0 MNVTEISAGQFQEMVQAGATRLHTNAEYVNSLNVFPVPDGDTGTNMNLSMTSGAKAVADS RSEKVGELAGALSKGLLMGARGNSGVILSQLFRGFSKQIPEVTTLNAKDLAAAFTHGVET AYKAVMKPVEGTILTVSREAARSGERKAKETDDCIEVMTAVVAGAKRALAKTPDLLPVLK EVGVVDSGGQGLLFIYEGFLEALSGEFLPTETYEPSPAEMDEMVNAEHHRGVSGHVATED IKFGYCTEIMVRIGEGPTVDSAFDYETFRNYLNELGDSLLVVNDDEIIKVHVHTEHPGEV MNYGQKFGSLVKIKVDNMRLQHETLVERDAQQEALTEKVRVPFAVIAIAAGEGVQELFRS LGASYIISGGQTMNPSTEDILKAVKEVNAEQVIILPNNKNIFMAADQAAEVADVPVAVVP SKTISQGMTAMLAFNDQQSLEENKASMTEMLDSVVSGQVTTAVRDTTIDDVEIKKDDFLG MIDGKIVVSEADRFNASLDTLNRMIDEDTEIVTIIVGEDGSVEEAEKLIAILVSENDELE TELHEGGQPVYPYLFSAE >gi|308151724|gb|GL476298.1| GENE 78 78923 - 80959 2186 678 aa, chain + ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 671 1 668 671 758 56.0 0 MDITDLVSVLPGVGPKRAENLQELGIATIEDLLTYYPFRYDDIQEKDLSEIQDQEKVTLK GLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQPFLKDKVVLSEEIAVYGKWDAKR KSLNGMKILASKGDNEDFAPIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEILPNDLLEKY RLMSRKEAMWAMHFPSNPEESHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDV DRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMT AGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIV VGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITA YGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALD VKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNV PNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPKNEMGVERMKIMTETTNGF VLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASALWQVKEWWQYPAY QGLANRVKPQDEAAQFFD >gi|308151724|gb|GL476298.1| GENE 79 81062 - 82063 1394 333 aa, chain + ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 331 3 330 330 428 70.0 1e-120 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEK IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERP GLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNG TEETKGSELTKKAFELLAADETINFVGNVEARELLNGVADVVVTDGFTGNAVLKSIEGTA MNMMSLLKTAILSEGVKGKMGALLLKNALRGMKDEMDYSKHGGAVLFGLKAPVIKTHGAT GPDAVRYTIRQIHTMLETQVVPQLVEYYEGKAE >gi|308151724|gb|GL476298.1| GENE 80 82200 - 82439 406 79 aa, chain + ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 79 3 77 77 61 57.0 4e-10 MTHEEVLQKVAKIISNHFDIEADQVTDQLNIKDDLNADSISVMEFVLELEDEFGTEISDE DAEKIETVGAAVDYIVSNS >gi|308151724|gb|GL476298.1| GENE 81 82736 - 83743 601 335 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 4 324 8 328 329 236 40 6e-61 MQGNEQLLEVSGLETAFRIKDDYYNAVDDVSFELKKNEILAIVGESGCGKSTLATTIMGL HDPNHTKITGEILYNNLNLTTFNETLYNKVRGNDIGMIFQDPLSALNPLMRIEDQIKESL TYHTKMTAQQKQARAIELLDQVGIPNPERVGKQYPHELSGGMRQRVIIAIAIACKPPILI ADEPTTALDVTIQAQILDLLKDLQEETGSGIILITHDLGVVAEMADRVAVMYAGQFVEVA TAEELFSHPKHPYTRSLLQSIPQENSDEEELHVIEGIVPSLTKLPRKGCRFAPRIPWIDA SEHEENPTLHEVAPNHFVRCTCYKHFHFRDGEGEA >gi|308151724|gb|GL476298.1| GENE 82 83743 - 84687 1081 314 aa, chain + ## HITS:1 COG:L92192 KEGG:ns NR:ns ## COG: L92192 COG4608 # Protein_GI_number: 15673822 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Lactococcus lactis # 1 312 1 312 319 415 64.0 1e-116 MTEIIQIKDLKVHYPIRSGFFNRITDHVLAVDGVDFMIEQGKTYGLVGESGSGKSTTGKA IIGLEKITNGEIIYQGQDVTKPRSRKAIGYNKDVQMIFQDSMSSLNPKKRVLDIIAEPIR NFERLSDQEEKKKVKSLLDIVGMPEDALYKYPHEFSGGQRQRLGVARAVATSPKLIIADE PVSALDLSVQAQVLNFMKNIQQEYGLSYLFISHDLGVVKHMCDNIAIMYKGRFVEIGTRQ DIYTNPQHIYTKRLLSAIPKIDVANREAHKEERRRVEQEYRENHKDYYDENGRVYNLHAI SPTHQVALKNGGAE >gi|308151724|gb|GL476298.1| GENE 83 84687 - 85649 1150 320 aa, chain + ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 348 51.0 5e-96 MWKTILRRLLLMIPQVIILSVLIFLLAKMMPGDPFTGLINPNQDPKVIEAMREAAGLNDP WYEQYFRWIGNALHGDFGHSFIFKLPVSTLIAGRVGNTIALAAVSVIITYLIAIPFGLIA GRYQNSWFDKMVVIYNFFSFAVPLFIFALIMLFIFGYRLDWFPTSGTVTVGLAEGTWPYY LDKLKHLILPGVTQALLGTAVTIQYLRSEVIDVKNMDFVRTARSKGVPTNKIFNRHIFRN AALPIASQLGYEITALIAGSVVIEKIFAFPGIGKLFIDSIIQRDYSVITALVLILGLATL IGTLISDIVMSIVDPRIRIQ >gi|308151724|gb|GL476298.1| GENE 84 85677 - 86600 1100 307 aa, chain + ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 307 19 302 302 301 57.0 8e-82 MELTEEKREEVLQESIPPMGFRMIAREFVKEKMAMFSLILLVIILLAVFIGSLVLDQSAV MHVSILDKYAEPGTVTMNGTKFILGADEGGRDVLGQLIIGARNSILIGFAITIITSIIGV GLGIISGYYGGMIDNILMRIVDFIMILPIMLIIIVFVSVIPKYSIWSFIWIMCAFYWVGK ARLFRSKTLSEGRRDYVSASKTMGTSDFKIMFREIMPNLSSLIITNLTINFAANIGIETT LTFLGFGLPQSVPSLGTLIGYASSGDVLVNKQWVWLPASILILVLMLSINYVGQAFKRSA DARQRLG >gi|308151724|gb|GL476298.1| GENE 85 86629 - 88407 2444 592 aa, chain + ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 45 575 64 588 610 499 47.0 1e-141 MNKKRILGAITLASVLVFGLAACGGGNKGGGNKATETEDISKMPIAVKNDKKAIDGGTLD VAVVMDTQFQGLFQQEFYQDNYDAQYMLPTVQPLFNNDADFKIVDGGPADLKLDEDANTA TIKLRDNLKWSDGKDVTADDVIFSYEVIGHKDYTGIRYDDNFTNIVGMEDYHAGKSPTIS GIEKVNDKEVKITYKEVHPGMQQLGGGVWGSVLPKHAFEGIAVKDMESSDAVRKNPVTIG PYYMSNIVTGESVEYLPNEHYYGGKPKLDKLVFKSVPSASIVEAMKAKQYDIALSMPTDT YPTYKDTEGYQILGRPEQAYTYIGFKMGTFDKETNTVKYNPKAKMADKSLRQAMGYAIDN DAVGQKFYNGLRTGATTLIPPVFKSLHDSEAKGYTLDLDKAKKLLDDAGYKDVDGDGIRE DKEGKPLEIKFASMSGGETAQPLADYYVQQWKEIGLNVTYTTGRLIDFQAFYDKLKNDDP EVDIYQGAWGTGSDPSPTGLYGPNSAFNYTRFESEENTKLLDAIDSKASFDEEKRKKAFY DWQEYAIDEAFVIPTLYRNEVLPVNDRVVDFTWAVDTKDNPWATVGVTAEKR >gi|308151724|gb|GL476298.1| GENE 86 88737 - 89429 956 230 aa, chain + ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 8 228 6 226 229 257 58.0 1e-68 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ >gi|308151724|gb|GL476298.1| GENE 87 89450 - 93028 4521 1192 aa, chain + ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 873 47.0 0 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLKYKQRKKKAEQK LFETEDNLSRVQDIIYELEDQLVPLAAQADAAKKYLALKEELTEIDVNLTVTEIQEAKAI WETKTQELTAIEEKLAGASKQVHDLEGKLVRLRSKRNRLDEQIETEQQQLLQVTEALKQA EGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREELQTLETAIAEKTAQRQTLKEAL ALATKDVEKYSKSSKELMEELRSQYVEVMQEQANTANDLKYLERQYQQETAKNQQSLAKH EALEEQMVEALAMKETLEKEQKVAKQGLQEQLEEYTALKATLEAKRERLAQRQNDMYQAM NQVQQAKARQKSLQEIQENYAGFYQGVKAVLRHKNQLTGIVGAVAELIEVPKEYTLAIET ALGGAAQHIVVENEKDGRAGITFLKQQHSGRATFLPLTTIKPRSVSAMVQNRLAGAPGFV GIASELVRYPEQVQTVIQNLLGVTILAADLTSANQLAKLVNYQYRVVSLEGDVMNPGGSM TGGANKRGNQGSLFSQAQELQTITEQMTQLETQLRSVEQEVQALSQEVKTATERAEMLRS AGEQNRLKQQEIDNKLANQTETITRLIKEKRLFEYESRELHQFLTEYQTKKATLTEQQAN LTATKERLDAEMKQVEQEASQMETFKAQAQERLTTVQAEQAVAAEQCAHFARQKQDKQEQ LDELLIRETAIRQQLQQLSSHSSDHQLTEEGLAAQVAQLAEKQTALQTSLQTARSQRQAL QEEVDELDTKLAEENKRQQQYLADKTQIEVLKNRAEMQLDSSLSYLQEEYSLTFEAAYEA YFPIDDLAQAQQTVKRLKQEIERLGPVNLSAIEQFEQVDERHQFLVSQRDDLLNAKEQLF ETMDEMDQEVKERFKEVFEAIRGQFKVVFPNMFGGGRAELVLTNPEDLLNTGIEIEAQPP GKKLQHLSLLSGGERALTAIALLFSIIRVRPVPFCILDEVEAALDEANVARFGHYLSEFE DGTQFIVVTHRKGTMEAADVLYGVTMQESGVSKIVSVRLEEVKEGGAIEKSN >gi|308151724|gb|GL476298.1| GENE 88 93053 - 93880 1182 275 aa, chain + ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 268 5 269 269 246 50.0 5e-65 MIKLVAIDLDGTLLNSQKEISLRNKQALMAAKQAGVKVVICTGRPLAAIGPYLEELGLQE EGDYSITFNGGLVQKNDTGAIIEKTLMPLEAIHELYQLATTLNMPFDVLSDEVVMQLPSA PNYPSIYSSLNKLLTFESYKLEELTPNRIYNKVVVAIDEAYLNERIKEIPASFYERFEII KTRNNLLEFMPKGITKAYGISLLAKDLGIRAEEIMTLGDEENDLPMIEYAGLGVAMANAI PLVKEAADVVTDTNDQDGVAKAVEKYILTPLEGGQ >gi|308151724|gb|GL476298.1| GENE 89 93883 - 95211 1005 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 127 441 13 326 336 391 62 1e-108 MGFFDKIKKAFSAEKKEEEKQEIIEETVDETPSDESAPAESKETAAEEAQTTPETTAEEV TETADLTDNAEMEKLAGVEEALEEEPEEILTEETQEVVVEAPEEESSVVTPLAEPTDTQV SEEIEESKEEQVQEKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGF DTSLKITEALRQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILF VGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG DPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLV VDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGIN DLEPFNANDFAMGLFKGLLKDV >gi|308151724|gb|GL476298.1| GENE 90 95426 - 95911 692 161 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 155 2 150 153 155 58.0 3e-38 MTEQMWIEKLGLEAHPEGGYFKQTNKSEQLIPTKRGERALHTAILFLLNTESPSHFHRLK ADELWFFHDGQPLTVHCIFPDGTYQAVQLGKDLVQGQQLSFSVPAGTIFGSTVATGFALV SCVVTPGFEFEDFELFTQAELLNDYPQHSEIIQHLAYRELP >gi|308151724|gb|GL476298.1| GENE 91 96031 - 96429 478 132 aa, chain + ## HITS:1 COG:L151700 KEGG:ns NR:ns ## COG: L151700 COG3607 # Protein_GI_number: 15673301 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Lactococcus lactis # 1 130 1 130 137 161 60.0 3e-40 MGTMVFVNFPVADVQRSTAFYEKLGFKKNEEFSTEEASSMMWDDQFWIMLLNHDFYGKFI QEKQIIDAQTTSGALISFSLESAEAVKQFGETAKANGGNCYRVDMGIPEEQMYGLEVQDL DGNSLEPVWMKM >gi|308151724|gb|GL476298.1| GENE 92 96509 - 97405 1187 298 aa, chain - ## HITS:1 COG:SPy2209 KEGG:ns NR:ns ## COG: SPy2209 COG1284 # Protein_GI_number: 15675941 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 282 3 277 290 231 49.0 2e-60 MNKFFTAQRLKDTAYVTVGAFILAISINAVLLPNKLVAGGANGISIVINYVFGISPAIVL YAINIPLLVLCFLLLGKEVGVKTIYGSLIYPFFVGITSGMPVLTHNIFLAALFGGIITGA GLGLVFRGNASTGGTAIISQIVNKYFKVSLGIAILFVDGLVILSAMYAFNADIVLFSLIC LFTIGRVVDMIQVGLVRSKNVMIISPKYVAIQERLLRELDKGVTLVPIEGGYRSAKGMLL MTVIREKDFPRLKEAILEIDEEAFLISMSASEVYGKGFSLKKVADSYGVEATNANNLQ >gi|308151724|gb|GL476298.1| GENE 93 98000 - 98500 468 166 aa, chain - ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 5 164 18 175 176 135 44.0 5e-32 MKNRALLLIDFQKGIESPSQQLYRLPAVLEKVNQRIAVYRQHHAPIIFVQHEETELPFDS DSWQLFEKLDAQPTDFFIRKTHANAFYQTNLNDLLTEQAVQTLEIASVQTEFCVDTTIRM AHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAGRFLTFLSL >gi|308151724|gb|GL476298.1| GENE 94 98671 - 100941 2551 756 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 21 480 21 481 481 390 47.0 1e-108 MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTDHPTVFGNRSYHPYIQTDFSE TQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQ YDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVA RNFLRYRWLITYLFGASPVSEDGYFRVYDDQPQEPIRSIRNSTYGYRNHDNVKVSYASLE RYLEDIHRMVENGLLSEEKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIV EDTVDFLHYFMLYLLWTDEKEEADEWVKTGDIFNEQVALGHPHETIKLIAEGDRIFSEMI DMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFER PYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNY VVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKAFVVKPKSTNYGLGI TIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGD GKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRE NSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGII EANFNPAMHMHVYPYAGQGRRLTMDVLKLLYPEVVQ >gi|308151724|gb|GL476298.1| GENE 95 100918 - 101019 57 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGAPRKRFYKEYRQKIYYEFFGGILFLLNHFWV >gi|308151724|gb|GL476298.1| GENE 96 101644 - 102096 585 150 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 122 132 72 32.0 3e-13 MANDDLQQRLDKGMYGTPLVNPEEQHKYMGTFRERCRLSMTVAEMKDAQNQKHLLEELAK HPEVTVLLNGEISSDLQSTYIKLLNQHGANFKIVNNFVENNPDSLGLLLAEKHAVDEPVI DVTEKYPQATETPKEEPTAKKSFWQKLFHS >gi|308151724|gb|GL476298.1| GENE 97 102281 - 103228 1061 315 aa, chain + ## HITS:1 COG:BH1025 KEGG:ns NR:ns ## COG: BH1025 COG4606 # Protein_GI_number: 15613588 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus halodurans # 1 314 1 314 317 277 51.0 2e-74 MKKIGLFVLLLLFSLLSLVIGVKDIALSQLFQLDAQQQFVLFTTRVPRTLSLIIAGSTMS ISGLIMQQLTQNKFVAPSVAGTTDSARLGILVAMLFFPTAPFLYRTAIAFIFALSGTLLF LALIRLLPSKNQVMVPLVGVMFGNILGSIATFFAYQYQLVQNMSAWLQGNFSTVMKGNYE WLFLMIPLWFVIYLFAYHFTVVGMGEAFANSLGVHYQRIQFLGLTLVALASAIVLLMVGN IPFLGVVIPNLVSLRYGDHMKNTLWLTGICGSLFLLICDILARVLIAPYEIPVSVVVGTL GSILFILLLLRGRKQ >gi|308151724|gb|GL476298.1| GENE 98 103225 - 104190 700 321 aa, chain + ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 12 318 7 313 315 209 41.0 8e-54 MKRPLKKWLSLLLLLAAVVIVSLCYLTYNTYGNWSFALALRGKKLLAFIFVGIAAAFSTI SFQTVTQNHFLTPNILGMDSLYVSVQTVLFFLLGGAQALGQVSLGSFLMNVFLMVFLSTS LSYFLLRKNQSDLFLLLMIGMILGTFFSSISTFLQVIMDPNEYDLLQGKLFASFGNVNSQ YLVFVGVAVLMICGILWRESYRLDVLHLGNHQAQNLGIAVNQFQLVLLCLISSLVGLSTA LVGPITFLGFIVANMSYQFMKTYRHRELFVAGSLIAVFLLVFGQLMVEQVFHLNTPLSVV IQFVGGVYFIWKIIAERKQRT >gi|308151724|gb|GL476298.1| GENE 99 104187 - 104942 274 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 110 29 5e-23 MIQMSDVSKKYGDKFVVSDIDLPISEGKLTAFIGPNGAGKSTLLAMMSRLIPKDTGEIYL DKQEVKTWKQSAFSQKIALLKQANGVQLKLTVRELVNFGRFPYSKGRLKSADHEKVTEAL EQLGLTEMAEEYIDTLSGGQLQRAYIAMILAQDTDYILLDEPLNNLDMNYAVQMMQILKR LVDELGKTILIVLHDINFAASYADEIVAMKGGKLYAHGATEEVIQTSILNDLYEMNIRIC EIEGKRFCLYH >gi|308151724|gb|GL476298.1| GENE 100 104981 - 105934 1240 317 aa, chain + ## HITS:1 COG:BS_yclQ KEGG:ns NR:ns ## COG: BS_yclQ COG4607 # Protein_GI_number: 16077451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus subtilis # 3 317 2 316 317 272 49.0 6e-73 MKKKFLAMMAVSMMGLLMLSACQTNKKTADSATTETTAKTEVTVKDTNGQLTVPKNPQKV VVFDNGSLDTMDALGVGDRVVGAPTKNIPAYLKKYQKVESAGGIKEPDLEKINQLKPDLI IISGRQQDYQEQLKAIAPTIYLAVDAKNPWESTKQNIETLGTIFDKEEVAKEKITGLEKE IADVKKQAEASANNALVVLVNEGQLSAYGKGSRFGLIHDTFGFKAADDKIEASTHGQSVS YEYVLEKNPGILFVVDRTKAIGGDDSKDNVAANELIQKTDAGKNDKVIMLQPDVWYLSGG GLESMHLMIEDVKKGLE >gi|308151724|gb|GL476298.1| GENE 101 106377 - 108020 1755 547 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 545 4 548 549 383 38.0 1e-106 MKLGKKVVGLIATGFLLAACGGTKEAAEKVDSGNLAAEQKISISSPAPISTLDTTQTTDK NTFTMAQHLFEGLYRFDDDSATVPALAKDVKISDDGRKYHFTLREGIKWSNGEPITAQDF VYSWKKLVTPATIGPNAYLLDSVKNSFEIRNGEKSVDELGISAPNDKEFIVELKQAQPSF LAVVSIAWLAPQNQKFVEAQGKDYALDSEHLLYSGPFTLANWDATSDTWTLKKNPEYYDA DQVKLEEVAVSTIKEDNTGINLYQANELDLVRINGQYVQQYQDDPGYVSHPDVANYFLDF NKKEGTPLANVHLRKAIGQAIDKEALTQSVLNDGSKPLNGLIPSKLYANPETDEDFRAYS GEYLKNDVKKAQAEWTKAQADVGKKVKLSLLAADTDQGKRIAEYVQSQLQENLPGLEITI SSQPSNNVNQSRREKNYELSLSGWIAGSSELDSYFNLYAGESSYNYGNYHNAKYDQLVED ARTINANNPEKQFAEYKEAEDILLNQEAAQVPLYQSASNYLINPKLKGISYHLYGDYFHL RNAYLTE >gi|308151724|gb|GL476298.1| GENE 102 108042 - 109262 1336 406 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 4 405 9 410 412 456 55.0 1e-128 MEKLVERFLTYVKVNTRSDANSQTTPTTVGQVVLAKMIETELHELGLADVHYNEQNGFLT ARLPGNQPAAKSIGLIAHLDTADFSAENIRPQVITNYDGQDVLLNQEQGIVLSVAEFPNL KEYQGETLITTDGTTLLGADDKAGIVEILAAVEYFLAHPEVARGDVWLAFGPDEEIGRGA DQFDAPNFPVAFAYTIDSGRVGHFEYETFNAAQAVITIEGTSVHPGTAYGSLVNAIKLGE QLDQSLPQKEVPEQTRGNEGFYLLNKFTGSIEKAELVYIIRDHDQENFQARKQFLEKQVQ RLNALADKPRLTITFQDQYYNMKEIIEKDWTPVELAVQAMESCDIEPIITPFRGGTDGSK ISFMGIPTPNLFTGGENFHGQYEFITVESMAKAVQTIIAIIRLNAN >gi|308151724|gb|GL476298.1| GENE 103 109348 - 109905 273 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 151 1 145 186 109 40 7e-23 MNYPLIFAENQRIETECLILRPVTLADAEDMYEYASDEETVRYVFLKNQTIAETRQNIAK FFMGEPLGKYGIEVKETGKMIGTIDLRVNETNNIGELGYVLNRAFWGNGYMPEAATALVE LGFAKMKLMRIFALHDQDNPASGRVMEKIGFTYEGTLPNARISKGKIVTDVYRGMTLETW QNRQK >gi|308151724|gb|GL476298.1| GENE 104 109940 - 110551 834 203 aa, chain + ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 201 6 203 204 161 41.0 8e-40 MLMFTEKEFAAFEVAGLDERMAVIRAQIQPIFQELDTYFAEQLAPELGTELFVHIAQHRR RTVYPPENTWSALSPNKRGYKMQPHFQLGIWGDYVFMWLSFIDNPKNEKQIAQAFLENQQ LFQALPEDTYVSLDHTVPQITPLMETDLEKALTRFRDVKKGEFEIGRIIPKDSDLWQNPE KARAYMLATYQQLLPLYQLAVAQ >gi|308151724|gb|GL476298.1| GENE 105 110916 - 111278 322 120 aa, chain + ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 185 88.0 6e-46 MKKNRYLIIACLLFSPSFFINVEASDGGSSSVGIEFYQNPRTPAPKDAPPKTDALAADSK EPTGPPQGDQRSGGSTQTTTTGSKLPSTGSKSQANLSILGLALIGLAGMVHRKKGRHEAN >gi|308151724|gb|GL476298.1| GENE 106 111265 - 115545 2822 1426 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1426 1 1426 1426 2410 98.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETITIESSPTVASSAKEATSASSATPESTE SSQETTETSREEVTQETVEQEDTTEIAQEENLLEPSGIQAKIMPRAFVWAATGTTNRTTV RLNDVVDYRMKLENITTDDTNSDIVGPIRIESKLAAGMTRPTSVIIKVGPEEQNVVIGEG SHNANSGGEYFVWTESTRTVTAFINRLHGRTSGNTGYIKTLYFQTRITSGTHNEKKYIDS TIRFNGFGAVNRRNEMTYVDRFSGNLGLKGNLKFYDEDGVASKEQMSLSINPVLFKSTNS RVEGTLLRYPLTMTNAGSGLYRFDTGLKNIGTSNGGSWFFFSNDIAINFATATTNRIDKI VLAPPKATLPDSRTGVMTSRAYTSTTYTRSNYDISTYNFTKATGKTWRITNRSSNSGVST NIMFSDNLVGTTGQFNKGNSGATINYYIYYKKLYENFVNSNGQKITPPSGFTQGKRTVIN SEAYTFKQSGTLPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYNNDDDLTVVY EEIEFFDFPALTYQFGFVDESGKRVDASTIGLTYDKWRGELLTNNVNDWKTVSLEKGQVA PTKNNLKEIAYPAQSLEILSDRSTQYSAANLTFTLPKYYGKISVYNKSGTFDAGYLFPNI QNNNSSEPSVEGLHKNLSSWFELKKSGNQSFVFNKPIPAAPIDVQVPAYLREIVYNPDLI SNTAVYYVIDKPVYYYLTNRKVTENFVDTSGAKITPPTGFTQGKQTAITSDPYTFKQAGT LPDTYTTGGKTYKFKGWYKGKTKTEPLTTTKAPSYGVTYNDNDDLNVVYEEVTAIYPGFY AQFVDEQGKAFTNPLTLSGNYTEFLRKTGTTVFETKGAFYPMVGKRDTTVTNKYKIETTS SLAVPNNYWTAMSADIANRGYALNNLDITNQMKYVDKIETTDTHTTMYDYTGVSDIWGKP NNTSQTELNPIDKTFVKQTDNTFAIKSIWGNGTFSHIVPKMLLLAESGSFSRLFGFDGTP DYKQTVNYKVTRKQVTETFVNTNGTKITPPTGFTQGNKIPMTSNTFKYTAAKALPATYTA GGKTYTFQGWYKGKTKPNALTTSTTPTYNTTFDGNDDMTAMYKEEVPKASVALTRTTAET VTSGGNVTWRATITNTSQAPLTTATIKKSTAWTTGLAAPTAMIVTPAGGTAKTVPVTATT WTNGVSLGTDIPVGKSATVQFTTKATGTAGQVLRAGITTSGNYSGVSASATVRVKDNDQV IVTPTAEGFISVPTFNFGQVGVAGSTQQHSLKKAADYYGNGTRNPYLRIKKTQPNWSLTA QLSQPKSATDSLPTATRLLLGAAPVSSFSNYNQPTELKNAVGTTSAISLNANNTATRIIA NQQFTGSNIYQLDFTFNNVKLEVPANQGVKGQQYQAAVTWNLVTGP >gi|308151724|gb|GL476298.1| GENE 107 116040 - 119924 3263 1294 aa, chain + ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1294 1 1294 1294 2282 98.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAIAETVTSESSPTVANSIKEATPASSARQESTE SSQETTETSQEKVTQETAKQAETKAPLETPEIKTNTTAQPAENSSENDRQTSISPRWVPN NQVIYPRITLAFTNESGQAFADENLTLSGTYTKFGYEDATSLWRPYAVNYPITSSNAGGG QYRVAVNATVPLPYDFFTDLPANYRMNIYAVEQLKIDNTLKYVDSIVAVPDSTLRMTRYS AQQTTELPQFGNHMTPFVLRTRDSIFSKSSENVFSLNTDGNEFLRILSVAPIGTPVEPVL YGFDGTATYRETLNYVVTRKQVTEKFVDANGVAITPPTGFTQNKKTPMTSNDFTFKQSGT LPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLTVVYEAIQEGKGMSS VQVMNKAIQNPVTLPDRMYRVLFINETGGLTFADRYGFTGELVEVADGKVTPIGPVPTNN NSAVKEITIPGRVFDTERPTPLQYGVRNATFTLPKMYKTVTYQPGPNYTGTAYSIPETYR LSLRSGVKSDIDTTGWRIGLDPTTDPQKFTMSGIYWSSMPTNVRLATLLSATITGKGVEP SVYTLDENARMYLYLENRRVTENFVDTNGTKITAPSGFTQGKKTVITSDSYTFKQSGDLP DTYKVGTKTYQFKGWYKGKNKPDTLTTTKAPSYPVTYNDDDDLTVVYEEVVMKTYNLPAK DVYFGYVDEAGNLLNTAGFSVEAELGESDETESTVLGKIQGTDEVMSKLKKLSIPGKSYD FPIDKLKTYGARSVNHTIPKQYKTMSITPLATYMGDKTKYPMTKEIRKNIEAPYTVVSQA DGVEAFKLTNAGTFFRTRRAFWTWDPNNTLYAMGIYSGTVGKNYNLASPEGTIYYYLENR RVTENFVDPSGAKITSPTGFTQGKQTVIDSDNFTYASTKALPDTYTTGDKSYKFKGWYKG KTKPGTLTTTKTPSYAVTYDDKDDMTAVYEEVQPTAEMTVSRLLEVIPNEASMMWIVKLK NTSEVPLTNVKLAPTAKWAAGISPPTQLAVRIGNTPNKIIPVTAEQWQAGVNLDIEIPVN GEALVTVNTAKITGEPRQLLTAEMTASGNFSAVTASNFVRIQGEDQTITPTPVEEGFIST PTFDFGKITINSSTKQYGLKKAADYYGNGTRNPYLRIKTSQPNWQLTAQLSQLTASADSL PTSTRLLLGSADVIAIENYNQVTELTNKVGVTNALTLTSDGTSTPVILNNQFTGNDVYQL DFDFANVKLEVPANQGKINEKYQGTVTWNLVTGP >gi|308151724|gb|GL476298.1| GENE 108 120000 - 120536 622 178 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 21 167 28 182 188 135 48.0 3e-32 MSSLLKRLVQLVLLVVAVLLIRHYVFSPAAVNGSSMEPTLHNNDRLWVTSIKKPQRFDII AFPSPRNGQRVAKRLIGLPGETVEYRDDTLYINGVSLSEDYLASAKRNVSKNENYTQDFT LETLEATQSLTVPEGMYFVLGDNRPRSDDSRYFGFVKQASVEGVLTFRYYPLDKIGFP >gi|308151724|gb|GL476298.1| GENE 109 120598 - 121146 752 182 aa, chain - ## HITS:1 COG:lin0607 KEGG:ns NR:ns ## COG: lin0607 COG1268 # Protein_GI_number: 16799682 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 175 1 175 182 181 61.0 5e-46 MNKASLRSLILAAEFAVIIAVLSQFTIPLGIVPLTGQTFAIGLTATVLGKRTGTYAILIY FLLGLIGLPVYAGMSSGFGVLFGPTGGYLIGFIFNGLLTGYILEKTTFNYTWAIIANIAG ALVTLVFGMIWLKYSANLPWPNAFAGGFAPFIIPGIIKAVAAAYVGILIRQRFMKRFLAH LS >gi|308151724|gb|GL476298.1| GENE 110 121307 - 121918 1045 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] # 1 203 1 203 203 407 100 1e-112 MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHM YGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRL PERDELYPEIDEALVVEYYNQKL >gi|308151724|gb|GL476298.1| GENE 111 122243 - 123046 777 267 aa, chain + ## HITS:1 COG:lin0602 KEGG:ns NR:ns ## COG: lin0602 COG2116 # Protein_GI_number: 16799677 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 5 258 6 259 266 273 67.0 2e-73 MKSGSPLFEQIDKSIDKKVNLFSNSFSRYAVRAMLACLFLTLGTAVAFAIAIKGEGISHG LGKMLYAFMFSWSLVMILYMNAELGTSNMLYMTVGVYRKKVNFSLAAKILFTCILFNLIG GVLFGFLVSLTVPFQDLPKDSFFFTSIAGKLEKTTLQILVEAMFANIVVNTAVLVSMRMK DDAGKVAAIIFIIFIFAFLGFEHVIANFPAFSLAYFASNGAIEAFTAGNVIHNLFWAFIG NFIGGGLIMGLGYAWLDKDNKNLTYFD >gi|308151724|gb|GL476298.1| GENE 112 123119 - 123772 647 217 aa, chain + ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 9 210 19 206 208 119 37.0 5e-27 MDTLQFQKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQLLKESHTWPKEKLCQEIEAY YQKTEREYQYVAIDLALQNVRRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSL RQYSKTNPQWVEELMKELVLSPLAQREGSKYLAKASE >gi|308151724|gb|GL476298.1| GENE 113 123782 - 124558 722 258 aa, chain + ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 258 3 256 256 178 37.0 1e-44 MERKLFAFDIDGTLLNSEKKALDSTREALAKLREQGHLVTLATGRSRYMAQEVIWDLDFT NYVLCNGAAAFVDHEQYYQNLLHAEALERLAQDSDQRGLGFACVGLDDIKKSNQHRAEKM EIAMNSFHFHSPAYDEHFYRQNDIYQALAFYDAEDQCTFEEEYPEFRFIRWHQHSVDVVP KDGSKSATLTYLAKRVGIDAKNIIAFGDGENDREMLSHAGIGVAMGNASPSIQKVATMVT DTNDNDGIWKALKEMKAI >gi|308151724|gb|GL476298.1| GENE 114 124603 - 125166 871 187 aa, chain - ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 187 13 203 203 262 68.0 2e-70 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG LAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRD VPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALK EGVLVIE >gi|308151724|gb|GL476298.1| GENE 115 125410 - 125715 512 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229547505|ref|ZP_04436230.1| ribosomal protein S15 [Enterococcus faecalis TX1332] # 1 101 1 101 101 201 99 1e-50 MTRRIIEKEVEQMAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKK DHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR >gi|308151724|gb|GL476298.1| GENE 116 125902 - 128016 1685 704 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 703 11 701 714 653 49 0.0 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTV NYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVE QDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAG TKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDAD LKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQI AEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTL APLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP SEEDFPYTIRLVAEVLESNGSSSQASICSGTLALMDAGVPIKAPVAGIAMGLVSDGENYT ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEE LTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVS IASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLAN ERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKEK >gi|308151724|gb|GL476298.1| GENE 117 128198 - 129058 1021 286 aa, chain + ## HITS:1 COG:L98749 KEGG:ns NR:ns ## COG: L98749 COG1792 # Protein_GI_number: 15674213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 44 279 44 285 291 165 40.0 1e-40 MKKFNPNKNIIITLILVIILVTIISLTAAQRSEKGKTNVVQGGVNNSVSMVDRVISFPAR VVENGLSSMGNLINTFKENERLKEKIDSYNELAVQNNNYKREIDSLKQELNLNETLANYE KVTANVITRSPDTWQDLLIIDKGTNDGIEAGMAVMAQKGLVGRVIEVNATTAKVELLTSK NVNSNHFPVRVTSANGESFGLLKNYDNKTNALIVSQLTGDATLKEGDVVQTSGLGGNSPA DLAVGTVIKVKPDSFGLDREVYVKPYADVYGISVVTVVKRSAGESE >gi|308151724|gb|GL476298.1| GENE 118 129055 - 129564 488 169 aa, chain + ## HITS:1 COG:L98132 KEGG:ns NR:ns ## COG: L98132 COG2891 # Protein_GI_number: 15674212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 7 169 6 168 175 82 35.0 4e-16 MIRKEYLKYVTPILLFFLMLIDAHLTKSFETWTSNVYFASSHLLLLAFMFAVPNFSKRYL LITSLILGFICDSYYIGIIGIYTVALTISVMLIYTFKEVIQTNLLTGFFGIVIFTTLYEL IAVLIQVAFHLADVSPILFITRVLGPTLLLNMVWYVILSYPLKKLFSVK >gi|308151724|gb|GL476298.1| GENE 119 129869 - 131317 1862 482 aa, chain + ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 270 270 93 31.0 7e-19 MKKSVLSALMVCSITLTSVALPSAAFADEYDTKIQQQDQKINALTSQMSDAEAKVAAIEN DMVETAKQIDTLTAKKNKLSSEVSKLYSEISDLNVRIQKREVQMTKQARDVQVNGQSDSI IDAVLDADSVADAIGRVQAVSTMMSANNELLEQQKEDKATVEKKTKNVEKQIAELEAATK ELNDKTESLKTLKIQQEVAKNDLEAQRSEEQGKKDGFIKQKKEAEKRLAEEQARQRAAAK KAEEQAAAQAQAAAQKAAAEQAQATKAANEAAASAAEEKAATPVVESSKTTESTTTQETT TSSTETESVVTTPVTAAPEKEKEVPVTNPTTPEKGNEAKPGNGGVTSGKQAAINAALADV GNSYATGWNQPGECLVSVRRWLAAGGINFGYGGPNSGYVASGATQVSWSNVQPGDVVQYE SAYSPDSWIGGVHTVLVTGVSGGSVQIVEANNPGGSGYVSSNSNWSPAPPAGFRAVVWRF PG >gi|308151724|gb|GL476298.1| GENE 120 131495 - 132064 600 189 aa, chain + ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 185 7 185 186 196 54.0 2e-50 MSGTHDTKQAIASALIELCEQKDFRKISVQDITKKVGLNRQTFYYHFTDKYDLLRWIYRH DALIYLETDICLENWEEQALKLLKAIKEKSHFYYTTVTSDSEVLLNVFSASTNRLFISLF EQVDVENHLTDKDKQFYANFFSYGCSGVLTKWILEEYPQTPLEMATQLFRLAKDTEFMAY HLYEQEANE >gi|308151724|gb|GL476298.1| GENE 121 132105 - 132575 605 156 aa, chain + ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 172 52.0 3e-43 MVTVLFVCLGNICRSPMAEAIFRQKVQQAGLESTIQVFSAATSHWEVGSQPHKGTRKILE QQGISYQGMRATQIQPSDFKKYDYIIGMDTNNVADLKALAPQEEQPRIHLFMEVVAGKET MDVPDPYYTGDFEETYRLVEAGTSEWLKKIKAQLKD >gi|308151724|gb|GL476298.1| GENE 122 132664 - 132894 365 76 aa, chain + ## HITS:1 COG:no KEGG:EF3057 NR:ns ## KEGG: EF3057 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 16 91 91 109 98.0 3e-23 MNSSYLSYVFELSLYYLLLIMSLPLVYAVTYHLSFSSMYTSEWLMISVFLSPLVLLFAGI RYGFARLKQQERQVMK >gi|308151724|gb|GL476298.1| GENE 123 132942 - 133676 795 244 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 242 44 287 287 218 46.0 1e-56 MRPKKKKRGKNWLINSLLVLLFIIGLALIFNNQIRSWVVQQNSRSYAVSKLKPADVKKNM ARETTFDFDSVESLSTEAVMKAQFENKNLPVIGAIAIPSVEINLPIFKGLSNVALLTGAG TMKEDQVMGKNNYALASHRTEDGVSLFSPLERTKKDELIYITDLSTVYTYKITSVEKIEP TRVELIDDVPGQNMITLITCGDLQATTRIAVQGTLAATTPIKDANDDMLKAFQLEQKTLA DWVA >gi|308151724|gb|GL476298.1| GENE 124 133910 - 134695 663 261 aa, chain + ## HITS:1 COG:no KEGG:EF3055 NR:ns ## KEGG: EF3055 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 499 100.0 1e-140 MLDLIYVHIDVTSNAVLSKGITHSDFVRSIVHHPQNLLLLDPSAEAGEYDMHSGLKIIRG EESVNRYFQSLQRRWMTEEIKWIDFSDVTMLKELTPLEISELLYFGHMKNSLHSPFFYKL QNDFVFFEFADQMTRVYYRYIDEFYRIFADKITRVVLEKVNQKKAFFKRNTPVEKLSPEL LKNMKGILQEGVIFCFQQTEVDKEEYRIPIYLVEDSLSKMKNTSYQKEEILATLVYNSEK RIWHIEQENDFGEIFMLAHEG >gi|308151724|gb|GL476298.1| GENE 125 134800 - 135426 691 208 aa, chain + ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 64 208 60 203 203 89 37.0 6e-18 MKKILYGSMTGLALFLVAGCTSKTPTAVSSTNEQKETVISTTETSSSVQQEATTTSEKTS AVAVSLEKVTTAFEKKYPEAKITSLQLDTDFGRYFYEIEGVDQQKEYQVEVNAETGEFTK EKVETLDADEQNGVKMQEEALDLTNIISREQATTLAEKEAKVGQATDWKLEKELGITYWE VKVKEGQQKIEVKIDAHSGKILTTERDD >gi|308151724|gb|GL476298.1| GENE 126 135589 - 136164 583 191 aa, chain + ## HITS:1 COG:SPy0600 KEGG:ns NR:ns ## COG: SPy0600 COG3859 # Protein_GI_number: 15674683 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 190 1 186 187 116 38.0 2e-26 MARKMDLRIWVEGTVVAAMAMALSFLPIEFANSGLDLSLGMVPLVLYSFRRGLLPGVAAG FVWGMLNIILGTAMKNFLSVPQIIFEYPFAFAFGGMGGVFARKIQLYFQANRLKSAIRTI ILGSVVAVFARWFWHFWAGVLVWGMYAPEGMSPYLYSFVLNGTSTVVNCLYVSLVLGLLA KVAPQLFVPKK >gi|308151724|gb|GL476298.1| GENE 127 136284 - 136646 386 120 aa, chain - ## HITS:1 COG:no KEGG:EF3052 NR:ns ## KEGG: EF3052 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 180 100.0 2e-44 MDQHKATIKSISKLITLSSQHFFSAFLEDSQDQKNKEKERSALLQELQVAAAQKSLVVLQ LKEVPTAHKFETVIGWIVSKNISDNIVVRLQTDEQQLRMIPVASVMKVSTLANRHQRQIH >gi|308151724|gb|GL476298.1| GENE 128 136872 - 137639 819 255 aa, chain + ## HITS:1 COG:no KEGG:EF3051 NR:ns ## KEGG: EF3051 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 505 98.0 1e-142 MSKKPSGYQKKVLTVLLVSFGFGGLLAQFSPMKSGGFSSWFDDSYVKASAESSKTKEPAP VKIEKKVKPLSYGQQVNQEIEKKQYSGHLDLPLELQTDAKWKDTAYGFGNVDKPNTIEIN GCAIVSLAMVGSYMDHQEVTPLDVLAWAKNDFFMEGQGTAWSIFSAYAEMKGYNCQEIGD IETVAAFLKEGHPVIISVKPGYFTTTGHIMVISGVDEKGDFWINDPNDSEEKSHSKRTFT AEEVMNEALNFWAFY >gi|308151724|gb|GL476298.1| GENE 129 137716 - 138267 442 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 180 1 179 185 174 46 2e-42 MERCTWATDTTEEMQAYHDDEWGRPVHEEQQLFELLTLESMQAGLSWAIILNKRETLRAA YDAFDYRKIARYDEKKILALLANPGVIRHRLKIQATITNAQVFQEIQAEFGSFDRYLWNF VDQQPIVNHWQHPEEVPASTELSQQISRALKKRGFKFLGATTVYSFLQAAGLVNDHLETC QYK >gi|308151724|gb|GL476298.1| GENE 130 138336 - 139088 530 250 aa, chain - ## HITS:1 COG:lin0527 KEGG:ns NR:ns ## COG: lin0527 COG1737 # Protein_GI_number: 16799602 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 248 1 247 250 205 45.0 5e-53 MLFLTYDPQLNPTELEIYKYISHNIEKVPYMTIRELADEIHFSKTAIWRFCQKFECEGYT DFKFKLKNYLSERKKTAQPKSLDETMLIHFLQRSSEELLEGRIVQAAELLAKKEFVLFIG EGTSKVLAEFGEIYFSSIYNLSASVSHLFSHPVSKLSEETAKKVGVIALSVSGETQKVRQ NIDYFIEMGIDVIAITNSEKSTIAQLSTVTIPYYITTEKSSIADVTSQLPALFLIEKLAK TVSTMLNECP >gi|308151724|gb|GL476298.1| GENE 131 139260 - 140048 969 262 aa, chain + ## HITS:1 COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6 260 5 249 249 143 36.0 4e-34 MSNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAI GVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSG RRPDHIDSHHNVHGKNEKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEML YQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS QEVKEAIEERGILLANYESLAM >gi|308151724|gb|GL476298.1| GENE 132 140135 - 141229 562 364 aa, chain + ## HITS:1 COG:no KEGG:EF3047 NR:ns ## KEGG: EF3047 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 602 98.0 1e-171 MSKEQPINLNISDFLKVFAVASVILQTVLSYVLTHSPQTEAMNSIGSFYRMSKYSAPMFI FAIIYNMVLKSQAESYLEFLKEKFYELVLPYVVWSSLYLYAFPSLQQRMPYETPLGFLGK VLSGDGAAHLWYAVMMLQFQLFMPYFIWLATRITKNKKVILPIVFFTIGAHILWCFWYQK MIFPYAETSLWYLIDRSGLSYLIYGIFGVIAAKYQGAIFTFLKKTRVALFLLFLFIFWQA VQGNLFDGTQMTPNDLPYLDLLQSAYSLLIIGLVFYLGTQGIAKKIRLLPMVKWIATYAY RSYLANVFVFQLVLKLVHPFLTNQPVSLVILVLYMGTFVGSFGLTVVIEHFFKSIFKLGR LVSV >gi|308151724|gb|GL476298.1| GENE 133 141376 - 141813 549 145 aa, chain + ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 100 1 99 144 79 42.0 2e-15 MIGLILTGHGVFSTGMHQSVSMIAGEQANVQAVPFFNDTGLDVLESNIRKAVDSMLETCP AVVILTDLLGGTPFRISMTVASNYQNVEVLAGTNLPMVLEGLALRTISTNVEDFVSMVTD SARDGIVHKKLEQPQANTQEEADGI >gi|308151724|gb|GL476298.1| GENE 134 141840 - 142316 602 158 aa, chain + ## HITS:1 COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 157 13 169 169 157 48.0 6e-39 MPNILLTRIDNRLIHGQVATQWNGSLGANLILVANDAISEDTMRQQLLNMAAPAEVQTRF FSIKKTIEVIHKASERQKIFLLVDNPVDALRLVEGGVPIEKLNIGNMHMEEGKKQVATAV AVNKTDVDAFKKLQELGVKLSIQRVPSTPEESLDALFS >gi|308151724|gb|GL476298.1| GENE 135 142362 - 143513 1247 383 aa, chain + ## HITS:1 COG:L173068 KEGG:ns NR:ns ## COG: L173068 COG1820 # Protein_GI_number: 15673317 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Lactococcus lactis # 40 382 44 381 382 203 34.0 4e-52 MIIQSKNVWINEQFQPAQVEVSEQRIVAILPYNEKAVDKEYGEKRILPGFIDIHDHGWHG GDANHANHEFIKEWQAYLPEEGITAFLPTTSTTFPKDLEHSFEVIGSFIEEDQGTNGAQI LGIHAEGPMISEEFRGSHNPELLVKPSVETFKKWQELAKGHIKLMTLAPENDVENALTTY CHEHDVVISIGHTAATYEQAMAAVEAGAKSFTHTFNGMEDISHRKPTAVVAALDSEETFA EIIADGVHVDYSLVRVLAKLKGKDYLIAVTDSIWAKGCQPGVYPKPEKGIEMVIDEQNVV RLANGKLARSTNHLNNMVRNLVEKALLPEVIAINSVTKNPARLLNVNESMGEIKLGLLGN FTIIDEKYEVLETLVNGETVYKK >gi|308151724|gb|GL476298.1| GENE 136 143538 - 144311 1004 257 aa, chain + ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 2 218 5 221 259 212 54.0 5e-55 MLVQAILVGIWAGIAGVDKLVLQTHIHRPIVTGLIVGLILGDVNTGLITGATLELVWIGA VAIGGAQPPNVVIGGVIGTALAIITKSDPQVTVGLAVPFAVAAQALITLLYTAMSPIMHK FDAYAKKADTRGIERMSSFLPIILFICYFFVVFLCIFFGADKASSFISILPEWSIHGLSV AGGMMPAVGFAMLLKTMWETSYVPFFIFGFVMAAYLGLDTLAVAGLAVAIALYEFYAQRN NTVTASNNNGGFEEDGI >gi|308151724|gb|GL476298.1| GENE 137 144301 - 145119 901 272 aa, chain + ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 3 268 23 288 292 258 47.0 9e-69 MASEETYNDTISEKVITKKELKKIMFRSYLLQSSFNYERMQAGGWTYSLIPGLKKIHRDK EDLALSLENHLQFMNTNPQLVTFMHGVIIAMEESKESPKSIQAIKTALMGPLGGIGDALF YLTVLPIAAAIGSQLSLEGNILGPIVFLLLFNIPYMAAKIGLINLGYKMGVKAISILSES TKKLSRSATIVGISVVGALIPKSVQLTTTFVFRLKDTKLDLQTQLFDTIMPNLLPLVFTL FCFIMLKKGRTPIALIIFTVIFGLLGSLIGII >gi|308151724|gb|GL476298.1| GENE 138 145186 - 146841 1830 551 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 549 22 556 559 410 42.0 1e-114 MKKSVLFTSLLVLSSLALAACGGGSDDKGASNGGSDNQVYTMVESQEMPSADPSLATDEV SFTTLNNVYEGIYRLDKDNKPAPAGAAEKATVSEDGLVYKVKLREESKWSDGKPVTAADY VYGWQRTVDPATASEYAYMFEPVKNAEKISKGELPKEELGIKAINDHELEITLETATPYF DDLLAFPSFLPQRQDIVERFGKDYTKSSDKAVYNGPFTLTEFDGPGTDTKWSLTKNEEYW DKETVKLDKVAINVVKEAPTALNLYETGEVDDTYLSGELAQQMQNSPDLVQLKAASSFYL EMNQADEKSPLTNANLRRAMSYAIDRDSLAKNILANGSLPSQGFVPVDVAKSPKTGEDFV KEAGSDKLVKYDKKKAVEYWNKAKQELGVSNLTVDLMVDDSEGAKKMGEYLQGSLSDTLE GLKVTVTPVPMAVRLDRTLKGDFQIAVRGWSADYSDPINFLDLLESSTSNNRGRYSNPEY DKFIAASKTTDVNDPEKRWEDLINAEKTVIADMGVVPIYQKAESHLRAPNVKEIIYHPTG AKYDFKWAYKE >gi|308151724|gb|GL476298.1| GENE 139 147044 - 147154 67 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLQKHLFAFVTIFFSSHLFFVKGMFILCQKNQINDE >gi|308151724|gb|GL476298.1| GENE 140 147160 - 147501 442 113 aa, chain - ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 30 108 19 100 103 85 54.0 2e-17 MNEENELTYFKGGLALGVGLGLVGGIASTLFYHKKKTISADLVLENVKAAFLKEGPIEGS WIEFEKKPLRKFAIHSKTYTGGICRIEDDGIVQYEFTADAYTGTVIDIQRLKD >gi|308151724|gb|GL476298.1| GENE 141 147808 - 148884 1242 358 aa, chain + ## HITS:1 COG:SPy0115 KEGG:ns NR:ns ## COG: SPy0115 COG1363 # Protein_GI_number: 15674335 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Streptococcus pyogenes M1 GAS # 6 354 5 352 355 417 56.0 1e-116 MEEKTFQRIKELTELQGTSGFEDDIRAYMKEHITPLVDDVQYDGLGGIFGIKRSKVEAAP RVMVAAHMDEVGFMLTQINDNGLFQVVPLGGWNPYVVSAQRFTLKTSKGNYPCISSSIPP HLLRGTSGQKQLEVSDVLFDAGFSSKEEAESFGVRPGDSIVPQTETIKTANGKNIISKSW DNRYGCTLVLDALETLQNEELGHTLIAGANVQEEVGLRGSKPSVHKFNPDIFFAVDCSAA DDIHTKKGTYGHLGEGTLLRIFDPGLITLPRLREYLLDTAATHNIPYQYFVSKGGTDAGA AHTTNNGVPSTVIGVCGRYIHTHQTMFSIADYEAAREMLLQALRGLDKSTVNTIVYGK >gi|308151724|gb|GL476298.1| GENE 142 148896 - 149210 509 104 aa, chain + ## HITS:1 COG:SP1911 KEGG:ns NR:ns ## COG: SP1911 COG0526 # Protein_GI_number: 15901736 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 103 1 104 105 134 59.0 6e-32 MIYPNSLEELATYVEKGKNVFFFTADWCGDCRFIKPVMPEIEEAFPAFQFIEVDRDQFID VAAEWNIFGIPSFVVIENGQELGRLVNKDRKTKEEISAFLISLG >gi|308151724|gb|GL476298.1| GENE 143 149358 - 149813 710 151 aa, chain + ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 150 4 146 166 125 44.0 2e-29 MEEQMYKNILVGVDGSDQANLAYERAIEVARRNGSRVIVANILENQVYTMMGYSTLNDQL IDQETAAAEELMADCKKYAESVDFHNVETVTMFGSPKEVMSHELPEKYNVDLIMVGQSGL NAVERVVMGSVSSYIIRQAPCDVLIVHSEEK >gi|308151724|gb|GL476298.1| GENE 144 149917 - 150648 816 243 aa, chain + ## HITS:1 COG:CAC3502 KEGG:ns NR:ns ## COG: CAC3502 COG2188 # Protein_GI_number: 15896739 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 3 227 2 226 237 121 33.0 1e-27 MDKLESNKKAPLYQQLYDAILNKVRSGEYQVGEKIPSEEQLMTIYGVSRVTVRNAIKQLV DENILIKRHGKGTFVSMPSYVESMTAGGSFTESGLKMNRKPTTKIISICLKKATGHVAEA LGVEKATEVIVIERLRSLDNMPAIFEIDYFRKEDQFMLDLELTDTSLLDILRQYRGVIAS YFDNIIEIALADEKLAEALAISEEEALVKINQTVVDNDNQILYFNEQYIRSESYKVAIRS YNK >gi|308151724|gb|GL476298.1| GENE 145 150663 - 151073 478 136 aa, chain + ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 124 1 124 140 57 32.0 8e-09 MRRFYIASHGDFSKGIKHSLEMIAGHSAAAVHTYSLYPGESAVDFFGELKKKAEQAPEDE FILMGDLFGASVVTAMMGLTVLENVIVFSGVNLNLALELMLAGSEKLTDEKIQVIIRNAR QGIQRVHIEEIENDDF >gi|308151724|gb|GL476298.1| GENE 146 151085 - 151828 932 247 aa, chain + ## HITS:1 COG:PAB1665 KEGG:ns NR:ns ## COG: PAB1665 COG0434 # Protein_GI_number: 14521266 # Func_class: R General function prediction only # Function: Predicted TIM-barrel enzyme # Organism: Pyrococcus abyssi # 15 247 6 259 259 87 28.0 2e-17 MKKKADFLELFAVEKPIIGVIHLKGKTDQEIQERAKKEIQIYSEHGIDAILMENYYGDYV QLEKALQYVTSLDLPIPIGVNVLNVDPLGFHLANKYHLQFLQIDSVVGHVKPRDEASLQA FFDLYRAKTTAKLIGGVRFKYQPMLSEKSVEEDLKIAQQRCDAIAVTENATGEETSIEKI KLFRKQLPEFPLIVAAGLNDKNVKEQLAICDAAIVGSNFKDTRKDTGDIYAPYVDSFMKI VKELRGE >gi|308151724|gb|GL476298.1| GENE 147 151831 - 152304 574 157 aa, chain + ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 168 55.0 3e-42 MIKMTRVDHRLIHGQVGFTWTKFLEADCILIASNTLVEDPLRMSAMKMAKPSGVKLVMKT IDDSIKALNSGVTDKYKLFILCESVADMYQLVKEVPTIKEVNLGGMKNGETRKQISKAVH LSETDIAQIKELTNEGIELTVQLVPDDQKVAINKLLN >gi|308151724|gb|GL476298.1| GENE 148 152326 - 153096 1154 256 aa, chain + ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 6 241 2 237 259 190 45.0 2e-48 MEVTFIKVLLMFLIAFFAYMHSWFGSTMWNRPIVVAPLVGLALGDLDTGIKLGATLELVF MGAFPVGASNPPDFVSGTIIATAYVIMSGQSISSAVVLAVPIATLVLLIDNLQMTFLLTG ASHLADKEAKRGNIQGVERIQLIAGIGNKVLLALIVALGFYLGVPFIEKVLSYVPDFITH GLDIAAGIIPAIGFAMLARMMVTKKMIPFLLLGFLFAAYLKISVVGIALFGIVIVLLYMN MSDGQTKEAVVDDNEF >gi|308151724|gb|GL476298.1| GENE 149 153080 - 153904 1012 274 aa, chain + ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 8 273 12 277 278 256 46.0 2e-68 MTMNSKNTKSVITKKDFWSVFFRSLTLDASWNYERMQNLAYAYAMAPIIRRLYKNNEEKK AALERHLEFMSVTPHISTLLLGISGAMEEENAKNHEFNSASINAVKTSLMGPMSGIGDSF FWGTLKVIATGVAISLSKQGNIFGPIAFLLIINIPHFALRYICLDKGFKLGAKFFSDVED SGVIEKVTTAASILGLMVIGGMTASNVVFELTAKVGSGKIATPLQEYIDQIMLGFFPALF FLVIYWLLGKKVKTTTLLVGVILLSIFLAALGIA >gi|308151724|gb|GL476298.1| GENE 150 154008 - 154628 844 206 aa, chain + ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 200 208 205 54.0 4e-53 MIFAYNKEHVGDVLLVIVADDQGAENQVKRVGDVARVSLVEAPETVVAWNIFNASALLGD INGTGQVTLTDEQIEKVNTAIKDAGFSETLEKDDTPKIVVGFVKSCKKHPDSDHLSITQT EVDNGEILQIVCGAPNIKAGQKVVVAKPGAMMPDGLMIWPGVLRGEESFGMICSAKELRL PNAPAKKGILELPFDAEVGSAFAVGE >gi|308151724|gb|GL476298.1| GENE 151 154696 - 155994 1567 432 aa, chain - ## HITS:1 COG:SPy2216 KEGG:ns NR:ns ## COG: SPy2216 COG0265 # Protein_GI_number: 15675945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pyogenes M1 GAS # 53 425 35 405 407 324 55.0 3e-88 MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHG DTKVSNVSYNVSSDVTKAVKKVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSG NNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLEVVLSDGTKVKGELVGTDAYT DLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK NESGETININAIQTDAAINPGNSGGPLINIEGQVIGINSVKIVQSTSQVSVEGMGFAIPS NDVVNIINQLEKDGKVTRPALGITMSDLTGISSQQQEQILKIPASVKTGVVVRGVEAATP AEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKMEVTYYRGSKEMKATIDLTIDK SALTQQNNRSNQ >gi|308151724|gb|GL476298.1| GENE 152 156395 - 156874 527 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 219 71.0 2e-57 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYHK Prediction of potential genes in microbial genomes Time: Wed Jul 6 19:41:06 2011 Seq name: gi|308151723|gb|GL476299.1| Enterococcus faecalis TX4000 genomic scaffold Scfld244, whole genome shotgun sequence Length of sequence - 51519 bp Number of predicted genes - 49, with homology - 48 Number of transcription units - 23, operones - 10 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1148 812 ## EF2174 hypothetical protein - Prom 1193 - 1252 9.6 - Term 1403 - 1444 7.3 2 2 Op 1 1/0.143 - CDS 1468 - 2310 613 ## COG3475 LPS biosynthesis protein 3 2 Op 2 . - CDS 2326 - 3159 827 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 3191 - 3250 5.9 - Term 3249 - 3278 2.1 4 3 Tu 1 . - CDS 3279 - 4676 1234 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Prom 4698 - 4757 2.7 5 4 Op 1 . - CDS 4782 - 6083 945 ## EF2178 hypothetical protein 6 4 Op 2 . - CDS 6112 - 8082 1829 ## EF2179 hypothetical protein 7 4 Op 3 11/0.000 - CDS 8116 - 10257 2272 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 8 4 Op 4 4/0.000 - CDS 10269 - 13412 3273 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 9 4 Op 5 26/0.000 - CDS 13402 - 14619 1286 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 10 4 Op 6 . - CDS 14632 - 15426 696 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component - Prom 15497 - 15556 7.0 11 5 Tu 1 . + CDS 15674 - 16015 375 ## EF2184 hypothetical protein + Term 16018 - 16069 12.1 - Term 16006 - 16055 13.3 12 6 Op 1 . - CDS 16062 - 17099 600 ## EF2188 racemase domain-containing protein 13 6 Op 2 . - CDS 17092 - 17457 473 ## EF2189 hypothetical protein 14 6 Op 3 . - CDS 17457 - 18182 864 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 15 6 Op 4 11/0.000 - CDS 18241 - 19083 1145 ## COG1091 dTDP-4-dehydrorhamnose reductase - Term 19099 - 19138 1.0 16 6 Op 5 11/0.000 - CDS 19176 - 20204 1215 ## COG1088 dTDP-D-glucose 4,6-dehydratase 17 6 Op 6 13/0.000 - CDS 20229 - 20801 828 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 18 6 Op 7 1/0.143 - CDS 20814 - 21680 1089 ## COG1209 dTDP-glucose pyrophosphorylase - Prom 21732 - 21791 5.6 19 7 Op 1 . - CDS 21802 - 22515 685 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 20 7 Op 2 . - CDS 22519 - 23346 736 ## EF2196 glycosyl transferase, group 2 family protein 21 7 Op 3 1/0.143 - CDS 23346 - 24128 655 ## COG1216 Predicted glycosyltransferases - Prom 24163 - 24222 8.4 - Term 24144 - 24209 4.2 22 8 Op 1 . - CDS 24256 - 25392 975 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 23 8 Op 2 . - CDS 25373 - 25474 58 ## 24 8 Op 3 2/0.000 - CDS 25503 - 26411 784 ## COG1295 Predicted membrane protein 25 8 Op 4 . - CDS 26427 - 27191 732 ## COG0024 Methionine aminopeptidase - Prom 27218 - 27277 5.5 + Prom 27279 - 27338 6.0 26 9 Tu 1 . + CDS 27366 - 27809 704 ## COG0716 Flavodoxins + Term 27833 - 27885 15.0 - Term 27819 - 27871 15.0 27 10 Op 1 . - CDS 27883 - 28356 459 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - Prom 28400 - 28459 2.4 - Term 28412 - 28470 4.7 28 10 Op 2 . - CDS 28514 - 29086 747 ## COG1309 Transcriptional regulator - Prom 29138 - 29197 4.8 + Prom 29243 - 29302 5.1 29 11 Tu 1 . + CDS 29337 - 30575 1649 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Term 30660 - 30712 15.8 + Prom 30695 - 30754 9.1 30 12 Tu 1 . + CDS 30834 - 31214 480 ## EF2205 hypothetical protein + Term 31228 - 31266 5.4 - Term 31216 - 31254 6.2 31 13 Tu 1 . - CDS 31432 - 31953 570 ## COG0590 Cytosine/adenosine deaminases - Prom 32036 - 32095 3.5 + Prom 31883 - 31942 4.0 32 14 Op 1 . + CDS 32031 - 32882 795 ## COG2508 Regulator of polyketide synthase expression 33 14 Op 2 . + CDS 32939 - 33784 666 ## COG0384 Predicted epimerase, PhzC/PhzF homolog + Term 33791 - 33818 0.1 - Term 33779 - 33806 0.1 34 15 Op 1 . - CDS 33811 - 34149 556 ## EF2209 hypothetical protein - Prom 34172 - 34231 2.5 35 15 Op 2 . - CDS 34233 - 34937 797 ## COG2738 Predicted Zn-dependent protease + Prom 34872 - 34931 5.4 36 16 Tu 1 . + CDS 35136 - 35489 463 ## COG5294 Uncharacterized protein conserved in bacteria + Term 35491 - 35537 11.3 - Term 35479 - 35525 12.1 37 17 Tu 1 . - CDS 35527 - 36531 1210 ## EF2212 hypothetical protein - Prom 36554 - 36613 5.8 - Term 36596 - 36641 13.2 38 18 Tu 1 . - CDS 36659 - 38125 1888 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 38165 - 38224 11.0 + Prom 38180 - 38239 10.5 39 19 Op 1 1/0.143 + CDS 38337 - 38717 567 ## COG0346 Lactoylglutathione lyase and related lyases 40 19 Op 2 . + CDS 38739 - 39221 683 ## COG3832 Uncharacterized conserved protein + Term 39226 - 39272 5.0 - Term 39211 - 39261 12.0 41 20 Tu 1 . - CDS 39265 - 40377 604 ## EF2216 hypothetical protein - Prom 40427 - 40486 10.3 + Prom 40454 - 40513 12.1 42 21 Tu 1 . + CDS 40550 - 42691 2124 ## COG3537 Putative alpha-1,2-mannosidase + Term 42692 - 42746 15.1 - Term 42686 - 42728 7.3 43 22 Op 1 7/0.000 - CDS 42732 - 44213 1677 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 44 22 Op 2 5/0.000 - CDS 44225 - 45937 1669 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 45 22 Op 3 2/0.000 - CDS 45909 - 46544 569 ## COG5578 Predicted integral membrane protein - Term 46561 - 46593 -0.1 46 22 Op 4 14/0.000 - CDS 46615 - 48081 1246 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein 47 22 Op 5 7/0.000 - CDS 48105 - 49028 945 ## COG0395 ABC-type sugar transport system, permease component 48 22 Op 6 . - CDS 49040 - 49978 930 ## COG4209 ABC-type polysaccharide transport system, permease component - Term 50438 - 50490 15.3 49 23 Tu 1 . - CDS 50535 - 51518 955 ## EF2224 cell wall surface anchor family protein Predicted protein(s) >gi|308151723|gb|GL476299.1| GENE 1 2 - 1148 812 382 aa, chain - ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 364 8 377 893 194 37.0 5e-48 MKRINKISVITMLMLTALVPSSSIVYAIDASSSESAEEVISTDTAETLNSTSSSGETSTE SSSSTSSSVPSETKNSLDTSDAKDTWQSKDAEETSETTSSSEANKKDEDEIVITEDMNKP MGSGMKGMRRKRAAYAYGDPISITEANRPPKNFIDVSSWNGSLSVANYQTMKSYGIGGVV VKMTEATTYQNPERFAQVQNANAVGIKVSAYHYSHFTTKDQAIKEANYFADTAINTGLPK DTLMVNDAEEGSMNNGQLTANSIAFANQLKARGFTNVLHYSMAAWFTEGVLSPTQLGTEN IWIAQYPFEPTADQLWHKNEGYAAWQWSSLLTIPGVDIGVGVFDINADYTGRFTSSGGKQ YDDLISQKNYDYNAKVKVASEA >gi|308151723|gb|GL476299.1| GENE 2 1468 - 2310 613 280 aa, chain - ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 5 279 3 275 281 335 58.0 5e-92 MQEMSQTDLKEIQAVTLTMSKYFVQFCQENNLLCYFCGGGCIGAVRSQGFIPWDDDLDFF MPRPDYEKLKKLWPQKADINRYPILVASKTYNDHNSFITIRDTATTFIKPYQEDLDIPHG LPIDIFPLDGAPEGKLRRKIQKFWALIYALFCSQVVPEKHGGLMAIGSKVLLGIFSSSKI RYHIWCFAEKRMTKYSFGSTPYVTELCVGPRYMGNIYHLEDFKSAIFVPFEDTKMPIPVG YKRYLTQVFGDFMQLPPEEDRQPHHEALIVDTKKSYTEYI >gi|308151723|gb|GL476299.1| GENE 3 2326 - 3159 827 277 aa, chain - ## HITS:1 COG:HI1695 KEGG:ns NR:ns ## COG: HI1695 COG0463 # Protein_GI_number: 16273582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Haemophilus influenzae # 7 274 4 267 267 204 39.0 1e-52 MEKVPVSVLLSIYIKERPEYVIACLDSIFNQTVKVDEIVLVEDGPVTEEMTVIVDKYKET YPEVLHVLPLEKNVGLGKALAEGVKACRNELIARMDADDIMKMNRIEKQWQLFQKNPNLV IAGSNIIEFDGNIENVLGYRNLPSSNEDIREFSKRRNPFNHMTVMYKKSDILEVGNYLPM SGFEDYYLWVRLLKKGKEAQNLSEHLVYARTGSDMYARRGGWQYFKSGLKGRKAIYQAGL GSFKDFFVSSSAHVIVSLMPNTLRGKFYEKFLRKEND >gi|308151723|gb|GL476299.1| GENE 4 3279 - 4676 1234 465 aa, chain - ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 450 1 449 461 282 36.0 8e-76 MTSKSEWSNARRIVIILADVLLYNLSIILGFMVKFGREIPSFNFVAYEKSAIYISIFFIF LNLLLGTYIFYNRKISDIIFVTVIGQILMTLTIMIVTFAGRWFTFPRSVLGYSFIIGIIV LSLWRILVYYLYLKVSNERKVVLLGKENQVMRSIQNFMSDKNNKHKVTSVVVSNYYENLK KIIDEIDIVYISSNVDENEKVKLYQLIVKHKKKIFLDTSFENLIMLKPNMMNFEDESIIE VSNFEIQPEENFIKRLFDILVSVCLFVITSPLMLIAAILVKATSPGPVIYKQTRITLDQR EFSILKFRTMSATAEAKSGPVLSTSNDSRVTTVGKYLRALRIDELPQLINVIRGDMSIVG PRPERPFFVDQFNQENPNYYLRHNVRAGITGYAQVYGKYASDYNSKLNFDLLYIKNYSLL LDMKILLQTIKILFDKVSSRGLDESEEREELTMDYCKENAIRIYR >gi|308151723|gb|GL476299.1| GENE 5 4782 - 6083 945 433 aa, chain - ## HITS:1 COG:no KEGG:EF2178 NR:ns ## KEGG: EF2178 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 433 808 99.0 0 MGKVLNRIGRLILLVTMIGSYTMWVVGIDGPVTKYMYANSSILLLIAVILVLLLNCTKLK FIDWLTVALALATWLLFHFTESIRHSTMQTDTMIPLIILLVLCFKVCVFDRVDQTLLLIV SLVALSATLYRMSVELPQLIPADEIFKESNKLESIWINTNTIGATLMFSTMMASSLIKAY RNKVFNLLLLPVYIGGVLGTWVSQSKTSFAILVGFILVDNLLPKRFLQRSKVWLFGFVGV AALGPLLFYLCAESDTVDLFTGRERIWHEFFAKWLSDPQHIKVGMEPFVASWKPLGTHNA FLFTLSNFGVIGYLILFGFLVSMILLIGFRKKTLDRLQVSLLLGFLLIWIHSFMEDILLA PHWMPIVYSFLGLAFYFRPEKKRGRHERPTTPKRRKRVKQTSPVSNEERPIAPVDEEGWD QPEELSRVQRHRR >gi|308151723|gb|GL476299.1| GENE 6 6112 - 8082 1829 656 aa, chain - ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 656 1 656 656 1248 99.0 0 MEQQLTTRKEKQPLRNQAEQSARLVDHLLRWRYLLAAVIFILLVAFKVHGSSLNMWDAYV SEYADGQKSSLIAGEPRGVRSDEWLVQTPFSLSQTQTGLKTHNDVITLNGQDMVVGYNSP AWNLATLAKPFTWGYVLLGKEYGLSWYWNLKLIGLILFSFEIGLIVTRRNKYLALLASVW IPFSSALQWWFVSPVGDLVFFGLGFLVGIYNYFYYHSSVRRRVICAITAVIMASGFVLVI YPALQVPLGYLILLFLILFFLEFRKKIKLDKWDGVLIGGALLMTAIIVGGSLYGSLDSLK AIMDTVYPGKRVSLGGDMPKRDILLFLTNWKMPFQDVPYSNNSEISSFYQLFFVILPLSP FIFYKKIKENIYGFVLFVYCLFNLVWMSVQFPTIFAKLTLWSYVPEQRAMLSFGFAAVLL SLWFIDYLWNRQAKIPMMAWLGALGLNVVLYFFVLYTGNLRLYVTRMDIIGVLVVATVLI VALFKRWRTLFVLVLLGIIMVSGAFVNPISRGVSAVYGKKLAVEVEEINKKDPNQLWVGE RLMYGYLPMLGVHTFNGVAFTPDLEAWKPLDPKGKDTFIYNRYAHINVEVGNQTPVLELM QKDAIIARLSPEKLKEYGIKYAVVYKPLEPLDTPTIHFEKLYGPDQNGAYIYRIND >gi|308151723|gb|GL476299.1| GENE 7 8116 - 10257 2272 713 aa, chain - ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 180 573 1 392 519 213 33.0 8e-55 MNEDIKVIFDSIYRDKATNNLTITGWALDTITKESPTFTINNENQVSAYNIQRVLREDVN QIYQTEPAIEAGFVVTLEGIKQKKVLPFHFQSSAHVVTVDFPLNKKYPVIPGTEDKVTRL WIKAKKGFKYMAKNGISHTIQRAKIEKLRNQASYPNWLARNEVLDIEAMTQEIATFHYQP KISIAMPVYNVEEKWLRLCIDSILNQVYTNWELCMADDASTDPNVKKILTEYQQLDERIR VVFREQNGHISEATNSALAIATGEFVALLDNDDELAINAFYEVVKVLNENPELDLIYSDE DKIDMDGNRSDPAFKPDWSPDLLFGTNYISHLGVYRRSILEEIGGFRKGYEGSQDYDLVL RFTEKTTKERITHIPKVLYYWRMLPTSTAVDQGSKGYAFEAGLRAVQDALVRRGINGHAT HGAANGLYDVYYDIESEKLVSIIIPTKNGYKDVQRCVSSIIEKTTYQNYEIIMADNGSTD PKMHELYAEFEQQLPGRFFVESIDIPFNFSTINNRAAKKAHGEYLLFLNNDTEVITENWL TLMVSFAQQERIGCVGAKLLYPNNTVQHAGVILGLGGVAGHGHYGYPHGDLGYFGRLAIN VNYSAVTAACLLMKKADFDAVGGFEEAFTVAFNDVDLCLKVQALGRDNVWLHEAELYHFE SQTRGYDDKGKKKKRFEQEKVMMEEKWGPLIENDPFYNPNLTRDIPNFSLRID >gi|308151723|gb|GL476299.1| GENE 8 10269 - 13412 3273 1047 aa, chain - ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 554 791 1 239 519 183 38.0 2e-45 MKYDFEMETDESTSVGKIVAQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELY DHVSQFSTDAFYGNIDENDWVEYFAGKTFDYIVFADVLEHLMNPQSALAKVKPFLKPGGQ ILITFPNLAHNSVLIDLFNNRLTWNETGLLDATHKSFYLQEGFEKVFAEVGLYIAKEDFT FNQVGYNEIPTTYEALPVEVQAAFKARPFGEVYQYFFALTAEPVEQPERVTPVNSYNEKN VHILINCGEEKETELDQPVDLQNPETKRFQLKIPEDVQLIKLFPSLTGAIVKLSMTIDGE TVPVAATNAFLVQEDIYYFLDTQVPVIEVTDAQMAGKDLTVDIDYFFEGNYSERENTFIH ALLDERNQFLEEMNKQTETAPMPTGKYKRITLTKFDKMINLTIDDIARDVENNVSVIRGW AYDKQTNYPLRFSIAEASESVTYTVETEYRRDVIDMFELEGDQDYGFVITIKDPEDLPAY TLNIDTKSGQKVQYVVERPNMVQPGTKFDRAWRSIQTRGLMGSVKWYFKRQEKAEAPVDV EAVLAEIKTFQFQPKISVAVPVYNVEEKWLAACVSSLQNQYYENWELCLADDASPSEHIK PMLEKYKELDQRIKVIYREENGHISEATNSALSIATGDFVGFMDNDDELAPQALYEVVKA LNTDPTIDFLYTDEDKITENGRRFNAFYKSDWNPELILNHNYITHFVVVKRDLLEKVGGL NSAYNGAQDYDFVLRATEQATKIKHIPGMMYHWRAIESSTALNPESKGYAYVAGQKAVQA ATERRGLKAQVEIAEFYGSYKINYLYDHVPMVSLIITNDTENMSSYLRQLLEKTAYTNYE ILLPERFENQINIQNDRLRYVSTETRHGMIQAAKGEYVALLNAGLVPTKNDWLKELMNIG QQETSGLVTGRVVDARYRVETVGVSVDTDKGRLLYPEKGTPGKSLGYYYRIALPRNIQAA TEDCLLFNKQLYLNLEGINENLGKEWMGVDLSLQFASAGKRNVYVSYAILKADEKMQNHD KKGSYKELAEKWTAEALVDPYRNPKHL >gi|308151723|gb|GL476299.1| GENE 9 13402 - 14619 1286 405 aa, chain - ## HITS:1 COG:PA1386 KEGG:ns NR:ns ## COG: PA1386 COG1134 # Protein_GI_number: 15596583 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 11 238 13 240 422 242 49.0 1e-63 MSEYAIDIQHITKTYNMYKKPSDRFKEALSPTKKSYHDLFYALDDVTMQIKKGEMIGFVG ENGSGKSTMLKIITGVLTPTSGSMVINGKISALLELGSGFNPEYSGYENIFLNGMVLGFS REEMEERVQDVIDFADIGDHLYQPVKTYSSGMFVRLAFAVAINVDPDILIVDEALAVGDL EFQLKCMEKFTEIKNSGKTILFVSHDVNSIRRFCDRTFWLQHGKVVEYGDTMDVTTNYEN FLKKKSIKTVDREATMKDETPTPDIIEVDHAELLNADYEPLEMVTQDEKVIVKIEYTVKN DQIKKPVCGVAIRTVDNHYVCGLNTLLDGVQIPWKKGRNVFYLEYEKMSLLTGEYYFDIA FFEEHATVPLVYKTKYVTMFITGRYAGEGIVILDHKWKDTTKDEV >gi|308151723|gb|GL476299.1| GENE 10 14632 - 15426 696 264 aa, chain - ## HITS:1 COG:BS_tagG KEGG:ns NR:ns ## COG: BS_tagG COG1682 # Protein_GI_number: 16080624 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Bacillus subtilis # 18 264 17 275 275 143 33.0 3e-34 MFKETFSIFKNIFQNKKLLLQFSFNDFKAKYAGSALGIVWAFLTPLVTVLTYWFVFSVGL RSRAGDNMPFIVYLVTGMVPWFFFSDSLLSATNVFREYSYLVKKVVFNVQILPTSKILSN LYTHLFFILIGFVITTANGYYPSLYSLQLIYYLACLLVFLTAITWITASTQPFLPDIMQF INIIMQTVMWTLPILWQPTGMIATILKINPLYYIVQGYRESYLGGAWFWEHWQYSLYFWG VTIVLLLIGSTVFRRLKPHFSDVL >gi|308151723|gb|GL476299.1| GENE 11 15674 - 16015 375 113 aa, chain + ## HITS:1 COG:no KEGG:EF2184 NR:ns ## KEGG: EF2184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 112 100.0 4e-24 MVLFIIYVFLSSAGLVLFKLGSSSLNIQLQQTIFSMNISLISLLGLFCYLISFILWMLII SRSDVSYIVPLGVACTNIAILIASNLILKETITTNALIGAVVIIVGIVIMNLK >gi|308151723|gb|GL476299.1| GENE 12 16062 - 17099 600 345 aa, chain - ## HITS:1 COG:no KEGG:EF2188 NR:ns ## KEGG: EF2188 # Name: not_defined # Def: racemase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 234 362 100.0 2e-98 MTKNNDVLDAFKFIAALSVVGIHTFPSKSILGSDLKILARFSVPFFFIVSGYFLFKKISF REKEKDKKILFNYIKRILKVYLSWLIFYIPFFIVSIMNFVKGEMDLRGKISFILSILLGY VPRIGVSWYLIALVMSVFIIYYIRSYFGEKVLLTIGIVSFLIGVFTSTYGKWYFDIEWIK QVPFYGSISFSMISTICYVIIGYFLANYVFEKPLNNLFLVLGIVIFSYVGLKEVKFAQQL GVFYDAQNYFTLPIVAVLVVILSFNLENIRIPGSDFLRKSSIIIYLAQNPIKYLLFYAAS QLGIQKLTYDNFKTYVVQVFLLIVFSYIIIKLSELRQFYWLKNLY >gi|308151723|gb|GL476299.1| GENE 13 17092 - 17457 473 121 aa, chain - ## HITS:1 COG:no KEGG:EF2189 NR:ns ## KEGG: EF2189 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 121 1 121 121 185 99.0 5e-46 MLPTVLWLALFLFAIGFFLYIIRGINKNIFLLKNALIWLLISIVLIIFAIFPHVAEWLAM AFGFETTSNFLLSAAVIVLLIMEIKNSVLISKHENRIKTLLQELSIMKSEEKWENREGKN D >gi|308151723|gb|GL476299.1| GENE 14 17457 - 18182 864 241 aa, chain - ## HITS:1 COG:L11285 KEGG:ns NR:ns ## COG: L11285 COG0463 # Protein_GI_number: 15672191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 2 237 5 237 241 250 54.0 2e-66 MKVLLIIPAYNEEENILRTIASIETFKQEVTHFQHELDYVVINDGSTDGTKQILEVNQIN AIHLVLNLGIGGAVQTGYKYALENEYDVAVQFDGDGQHDINSLPILLEPLAEGKCDFSIG SRFIPGNEAAFQSTKMRRFGIRLLSFCIRMASGKTIYDVTSGYRAGNRKVIAFFAKRYPT NYPEPESIVHLIKKRFVIVERPVNMMERLGGVSSIRALASVKYMLEVGSAILIAAFMKEG D >gi|308151723|gb|GL476299.1| GENE 15 18241 - 19083 1145 280 aa, chain - ## HITS:1 COG:L320 KEGG:ns NR:ns ## COG: L320 COG1091 # Protein_GI_number: 15672181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Lactococcus lactis # 1 276 1 281 299 353 64.0 2e-97 MILITGGNGQLGTELRHLLDEQGIEYVSTDSTELDITDADSTLAKVKEIQPSVIYHCAAY TAVDKAEDEGKELDEKVNVDGTRHVAEAAKAVGATLVYVSTDYIFDGTKKEGVYAIDDQP NPLNEYGRTKLLGEQAVQEILDDYYIIRTSWVFGQYGHNFVFTMQKLAETRDQLTVVDDQ FGRPTWTRTLAEFMAFVIAEKAPFGVYHLSNENSCSWYQFAKEILKDTEVEVLPVDSTQF PQKAQRPQYSVMDLSKTEALGFKIPTWQEALAQMLENVQQ >gi|308151723|gb|GL476299.1| GENE 16 19176 - 20204 1215 342 aa, chain - ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 2 342 3 343 346 582 81.0 1e-166 MKKIIVTGGAGFIGSNFVHYVVKNHPEVHVTVLDKLTYAGNEKNLEGLPSDRVELVVGDI ADAELVNRLVAETDAVVHYAAESHNDNSLNDPFPFVQTNLIGTYTLIEACRKNNVRYHHV STDEVYGDLPLREDLPGHGEGEGEKFTAETPYNPSSPYSSTKAGSDLLVKAWVRSFNLQA TISNCSNNYGPYQHIEKFIPRQITNVLSGITPKLYGAGKNVRDWIHTNDHSSAVWAILTK GQIGETYLIGADGEEDNKTVMELILELMGQPVDAYEHVNDRAGHDLRYAIDSTRLREELG WEPEFTNFREGLAETIKWYTENEDWWRADKEAVEAKYAQNGQ >gi|308151723|gb|GL476299.1| GENE 17 20229 - 20801 828 190 aa, chain - ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 6 178 9 180 185 186 55.0 3e-47 MKVIDTKLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRG LHFQKGEAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHG FVTLTPNVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPEKAITSEKDQKHPTLKEFE AENPFIYGEI >gi|308151723|gb|GL476299.1| GENE 18 20814 - 21680 1089 288 aa, chain - ## HITS:1 COG:L197041 KEGG:ns NR:ns ## COG: L197041 COG1209 # Protein_GI_number: 15672176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 285 1 285 289 461 79.0 1e-130 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAAE >gi|308151723|gb|GL476299.1| GENE 19 21802 - 22515 685 237 aa, chain - ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 4 206 10 222 328 114 30.0 2e-25 MISVCIATYNGEKYLAEQLDSILLQVSEEDELIISDDGSTDHTLEILRTYAANYPQIQLL QGPGQGVIANFAFALTHTKGEVIFLADQDDVWLPNKVTTVTEYFETHPDIQVVISDLKIV DADLQVTNPSYFKFRKIKSGFWRNAIKSGYIGAGMAFRQEMKNVILPIPPEVPMHDMWIG LLAARKKQTGFIKEPLVLYRRHGANVSPIITKTSFQQKLNWRVNLLKALHQRLKEQR >gi|308151723|gb|GL476299.1| GENE 20 22519 - 23346 736 275 aa, chain - ## HITS:1 COG:no KEGG:EF2196 NR:ns ## KEGG: EF2196 # Name: not_defined # Def: glycosyl transferase, group 2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 526 97.0 1e-148 MSQRLAVVIVLYQMKMADAPNYLLLKEVVNHPELHLFIYDNSPLPQEDALFLQQNVTYRH NPDNPGLATAYNEAIAFSQANQCELLLLLDQDTEVPASYFDTLIIMPLDPTVAVYVPIVD ANGQQISPVYSDQYVGLKGAKPTAGIANQPLMAINSGTVITAETLRWLEEFSEEFPLDYL DHWFFYQLNQANKKIEVLPIHLKQELSVLDYRTMSPQRYRSIIEAETLFYRRYDQEKFSH HRRHLFLRSSKQFLTVKNRQIWRQTLAEFLKLMKG >gi|308151723|gb|GL476299.1| GENE 21 23346 - 24128 655 260 aa, chain - ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 5 257 4 251 275 109 29.0 5e-24 MQEMVTISIVTYNSRYIFNVLDQLKAELGTDSIYDIHIYDNHSETAYLEKLTTYEPFITI HRAEENQGFGHGHNQVLFNASTKYAIIFNPDVLVTKDVLDRLLDRIKIDKNIAVVSPKVL NEDGTTQYLVRQKLDVFDYMLRFIPFQFVKKIFDKRLSIYECRDLSDTETTDIKMGSGCF MLIDREKFVEIGGFDERFFMYFEDNDLCLRFGKAGYRILYTPFETVVHMYEKGAHKSRKL FKIFMQSMGKFFNKWGWRFF >gi|308151723|gb|GL476299.1| GENE 22 24256 - 25392 975 378 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 4 365 10 397 443 379 53.0 1e-105 MSLFIYEVLIRLFMTFILSLLLTPLVKLLAFRIGAYDAPGERRINTKNMPTAGGLAIYIA FASSCLLIFRSIIPQDYIWPIILAGGMVVLTGLIDDIKEITPMKKTIGILLAALVIYFVA GIRIDFVTLPVVGMIDLRWFSLPLTLLWILAITNAVNLIDGLDGLASGVSIIGLTTIGIT GYFFLHAKTVYIPIVIFILVASIAGFFPYNFYPAKIFLGDTGALFLGFMIAVMSLQGLKN ATFITVITPMVILGVPITDTVYAIIRRLLNKKPISSADKMHLHHRLLSLGFTHKGAVMTI YALALVFSFVSLLFSYSSTVASILLIVFCLIGLELFIELIGLVGEGHQPLMYLLRILGNR EYRQEQMKKRLGKHSKRK >gi|308151723|gb|GL476299.1| GENE 23 25373 - 25474 58 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPEHMFQLVNASVYGIIYPEREESGFDYVTIYL >gi|308151723|gb|GL476299.1| GENE 24 25503 - 26411 784 302 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 10 276 289 176 35.0 6e-44 MKFLDNIKKNQSLMRFIETTQSHMVTAEIGNSSVVVAYYLLLSLFPLLIAVGNVLPYLRI DPNSVLPYIAEAIPKDVYKNLEPAIRSLLTQRSGGLLSVSALAAFWSASQSINALQNAMN KAFGVEQRKNFILVRVVSFLVILLFMVAIVGVVVILGLGQYIIELLQPIFHYSTSVIDTF QALKWPLTTVVLLVIMCLIYAVVPNRKLSLRSILPGAIFSTVGWMLLSQIFGLYVKYFSS RIASYQIIGSFIILMLWLNFAATIIILGAIVNAVVDEYLSGDKEKKQPSFEQRLFRWFKK KK >gi|308151723|gb|GL476299.1| GENE 25 26427 - 27191 732 254 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 361 67.0 1e-100 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPII PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKE GPRILTSQGEELTY >gi|308151723|gb|GL476299.1| GENE 26 27366 - 27809 704 147 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 145 149 173 73.0 1e-43 MTLAKIVYASMTGNTEEIADIVAEAFEDLELEVEIDECTQVDAADFEEADICVVATYTYG DGDLPDEIVDFYEDLQEIDLSGKIFGVCGSGDTFYDDFCKSVDDFEAVFTQIGAKKGADS VKVDLAAEEDDIQRLEEFAKKLATAAE >gi|308151723|gb|GL476299.1| GENE 27 27883 - 28356 459 157 aa, chain - ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 3 157 10 165 170 82 35.0 4e-16 MNRVKDKRLWLSIVGITGLGLLSGLFSVNAREYYQALRLPSFAPPGWLFGPVWLVLYIFM GITFYFILVHPNKQQKKRMITLFILQFIANFFWTFFFFSLQNNLLSVIDISLLWLLLIVQ QWDYLRYKLITRGWLMIPYILWVTFAAALNYSILFLN >gi|308151723|gb|GL476299.1| GENE 28 28514 - 29086 747 190 aa, chain - ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 175 1 174 188 69 27.0 3e-12 MARKKTITKEQILTAAYEVVATEGFSKFTARNIANKMKCSTQPIYLEFKNMDDLRDALFQ KIHKYLAKEVFPVKHTGNTIVDLALNYIHFATSESKLYRALYLEEYGGGKKMQEFSYHYF TEAVKADPEYANLNDVQIDSLHMGTWVVATGVAALMTSGIIHPSEEQIIHLMKDSIEAIL ERDEPIDIDL >gi|308151723|gb|GL476299.1| GENE 29 29337 - 30575 1649 412 aa, chain + ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 412 413 515 62.0 1e-146 MTLENFNENLKKYARLIAETGVNVQDNHTVVLQISVDQAPLARLITEEAYRLGAAEVIVQ WSDETIQREFLAHAATDRIENVPQYKIDQTDDWIAKGASRISVVSSNPDALAGVDAQRVA AFQAANGKALVNLRKATQANKVSWTVVAAASEGWAAKVFPELATSEEQVDALWNEIFKTT RIYEENPVIAWDIHDKKLQEKAAELNEQQFTALHYTAPGTDLTIGLPKNHLWEGAGSYNA RGEEFMANMPTEEVFTAPDSRRVDGYVSSTKPLSYAGTIISGMKFTFKDGKVVDFSAEQG EEALKNLLAIDEGAKHLGEVALVPDPSPISQSGLIFYNTLFDENASNHLAFGSAYAFNLQ GGTEMSEEELAEAGLNRSQTHVDFMVGSDKMNIDGIKEDGTIVPVFRNGDWA >gi|308151723|gb|GL476299.1| GENE 30 30834 - 31214 480 126 aa, chain + ## HITS:1 COG:no KEGG:EF2205 NR:ns ## KEGG: EF2205 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 126 126 231 99.0 5e-60 MGLFDGLLGNATQNNNETAEKELRDVLIPNEKVDMAFTLVRDLIVFTDKRLILVDKQGIT GKKVDYKSIPYKSISRFSVETSGHFDLDAELKIWISSAELPSVSLQFRKDKDIVAIQQAL AAAVLS >gi|308151723|gb|GL476299.1| GENE 31 31432 - 31953 570 173 aa, chain - ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 12 164 2 154 154 193 62.0 1e-49 MGKKETTLTQEEKEFFMREAIAEAKKAEGLAEVPIGAVIVRQGEIIGRGHNLREARQEAT AHAEMYAIQEACRGIENWRLEETQLFVTLEPCPMCSGAMLLARIPEVYYGATDPKAGTAG TLMNLLEDERFNHVAYVEAGVLEEECRLLLVQFFKKLRAKKKEEKLLKNQKKD >gi|308151723|gb|GL476299.1| GENE 32 32031 - 32882 795 283 aa, chain + ## HITS:1 COG:lin2875 KEGG:ns NR:ns ## COG: lin2875 COG2508 # Protein_GI_number: 16801935 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 279 1 282 293 130 35.0 3e-30 MIIENLSQLYPKGYLSKTIGSEATYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPT ITGNHPWFSYLFQQAKLPAEGTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNN MYILVEEQSKNTFQQEEIQGIFLTLDTDFDCTSAVFVGNFYSSEDILRRCFHEEQRIFSE ELNSSSRTTVFSLTDVALHYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNIS STAKDLFMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK >gi|308151723|gb|GL476299.1| GENE 33 32939 - 33784 666 281 aa, chain + ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 279 1 279 282 360 64.0 1e-99 MKITAYVASAFSKNHEGGNKAGVVFMTQPLTRTQKMAIAKELGFAETAFISDSKIADFRL EYFTPKEEVDLCGHATIGAFTIMKHLNKLLQTEYTIETNSGLLAITANGEQLFMEQTVPT FYDTLTLEELSGCFDLNAVATAFPIQIVSTGLKDILVPIKNAQLLQDLQPNFEKIKLLSQ KYGVIGMHLFALSEENIICRNFAPLYDIDEEAATGTSNGALACYLYHHQILQKTNYTFAQ GYTLNAPSEVLVRLNTTPQKTIDQVLVGGRGYYVETKELFL >gi|308151723|gb|GL476299.1| GENE 34 33811 - 34149 556 112 aa, chain - ## HITS:1 COG:no KEGG:EF2209 NR:ns ## KEGG: EF2209 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 132 100.0 5e-30 MKASTKIGIGLSIAAVASVSVAVIASEKIIKKVSHVSNRYKVKKFVDDKFDGNQKLLSIV DDLSDDELDSVLNVVDRVKDGGSKLAEYGEKVKDNTDSLKERFFTFIEDAMK >gi|308151723|gb|GL476299.1| GENE 35 34233 - 34937 797 234 aa, chain - ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 5 228 2 224 230 175 44.0 7e-44 MMPFYFGIDPTYILVIIGIAISGAASAYVNSTFRKYDQVRSSKHVTGTQAAQYILQKEQI NDVGVQQIAGDLTDNYNSGNKMLSLSEATAQSTSVAAIGVAAHECGHAVQDHTNYVPLRL RAAIVPVANIGSTISFPLILIGVLFSWNQTLINIGILAFSLALIFQLVTLPVEFNASRRA LSILSEGGLLTEEEVPMARKVLFAAALTYVAAALSTFLQLLRLVILFGGNNRRD >gi|308151723|gb|GL476299.1| GENE 36 35136 - 35489 463 117 aa, chain + ## HITS:1 COG:L177221 KEGG:ns NR:ns ## COG: L177221 COG5294 # Protein_GI_number: 15672565 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 117 3 116 120 82 38.0 1e-16 MKTLLKILIPIVILAGGSWGVYNYYYGGEAYYTQITTSGEKKDEKTNSGEAMTIYYYQQP AFNKNGEEKTVELNEARDQPLRMKAYLKLKVNPRKGVISWNEVTEKEVPEKALEKLK >gi|308151723|gb|GL476299.1| GENE 37 35527 - 36531 1210 334 aa, chain - ## HITS:1 COG:no KEGG:EF2212 NR:ns ## KEGG: EF2212 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 1 334 334 581 100.0 1e-164 MDIYLKKAILHIIDRETGTPVFSEKELDLTTEYIRTYLTAKISKLSTAQTKTGTLAENSS FVDTLRGIPSDFIKKSQEVTQHWYDVYSGSEDAPSADILFILYELDTVLHVAMIKLNYKE SYTHYVDYEEESVYNKLIINRAILSSKSQKPDEGITVDLDTLAFELLEKRYEFSGEKIWY FSEKVIETQAAPSMEENIKEIKKAVKRIGKKFNEDEFELMASVKEAVYDSIEETGTIDNE QIAEQVFKENVSAKLAYQEEVNESKFVDKTPPVRESREISEKKFGKQKLKMDNGIELIVP LDVYRNGDLIEFVNNPDGTVSIMLKNIEKISNQL >gi|308151723|gb|GL476299.1| GENE 38 36659 - 38125 1888 488 aa, chain - ## HITS:1 COG:lin1223_2 KEGG:ns NR:ns ## COG: lin1223_2 COG1263 # Protein_GI_number: 16800292 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 474 1 383 403 537 74.0 1e-152 MGKFQSDAQQLLKAVGGKENISAVSHCATRMRFVLKDPKKADVPVIEDIPSVKGTFTNAG QFQVIIGNEVPQFYNDFSAISGLEGVSKEEGKAAAKSNLSPVQRVVSVLAEIFTPLIPAL VIGGLILGFRNILEGVPFGFLDGQTIVEVSQFWNGVNSFLWLIGEAIFHFLPVGITWSIT KKMGTTQILGIVLGITLVSPQLLNAYSVATTKAAEIPFWDFGFAQVNMIGYQAQVIPAML AGFLLAYLEIFFRKVIPQAISMIFVPLFALVPTVLAAHVILGPIGWTIGSWVSDIVNAGL TSTFNWLFGAVFGFMYAPLVITGLHHMSNAIDLQLIADFQSTNLWPMIALSNIAQGSAVL AVIFMHRGNKKEEQVSIPAMISCYLGVTEPAMFGINLKYVYPFVAGMIGSAMAGMFATLM GVRATSIGVGGLPGILSIVPQYYLPFLVAMVIAIIVPMGLTYIFRKKGIFNKVDPVDEAT GMLYSEEG >gi|308151723|gb|GL476299.1| GENE 39 38337 - 38717 567 126 aa, chain + ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 1 126 1 126 126 158 61.0 3e-39 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISD QFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGEKMTFFFDPDGL PLELHE >gi|308151723|gb|GL476299.1| GENE 40 38739 - 39221 683 160 aa, chain + ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 155 15 156 160 73 34.0 1e-13 MKDTFRLENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILP DFEETMPFTDYAEEKYLGVTWDTGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAG WSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLEN >gi|308151723|gb|GL476299.1| GENE 41 39265 - 40377 604 370 aa, chain - ## HITS:1 COG:no KEGG:EF2216 NR:ns ## KEGG: EF2216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 370 1 370 370 573 99.0 1e-162 MIVIYFFSTKSQQFFAYVWAIFPVIAFFLVSFYTLDFLFSPSYLIMVPVFTIMFKINYKK DYSFVALLKMSIRQFVISFLAFIASSSFSWSIILNSSVTFLIVYLFYSSATPMRYHSYLM MFTFCQLIQVKGNTFLMQSQVVAFLIGLFLLALTLNAWWQTGLRQLTSLKSRGHVRFFKS IQLNMKQQKLAVINFWHDLQQIFFGITSFKQFLESPDERVQRFRLAIRMSFTITLSFILM WSVGGIKIIWIPMNVFLLLHPVKAEMNTRIKTRFWGTLLGCFLSLFVVNWLQLPLTHLVV SSLIGIFVYSLKPGTVLQVTMATIFGLCLATISLRGMYAAELRVSFVLLAIFVVCLIDLG LFVYQRILRF >gi|308151723|gb|GL476299.1| GENE 42 40550 - 42691 2124 713 aa, chain + ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 1 710 1 715 717 948 64.0 0 MNIQAIDTRHGTANQHSFSNGNCLPYTGVPFGMNFYAPQTTDQKGSWWFHPEDRTFQGYR VTHQPSPWMGDFSHLLMTPVSGSLSELSLFHAQSSYRPEESLFSPVEINLTQLRYQITSQ LIPSMYGGILTIDYQQKDNHLLLTLPGRYQVKQLDDHQVAVKVINYSGCEDPDFSFYFVL HFEQPLTKWFAPSSGEDGKILLSFGNIAQQVVHFSSSFISEKQAQLNLAREISLRSTEML QQGIADWHNYFDRLKVTHENPEHTKTFYHTLYRTFLFPQTFYELDENQQPIHYDTFSQTV RPGVLYTNNGFWDTYKTVYPLFSLISQEKYEEMLEGFLNSYNETGFLPKWLSPDERGLMP GTLIDAVIADAAVKKIRPDLMPQFLEAMKKGATQQSERENYGRQGTLDYLKYGYVPSTYH ESVNHTLDYAYSDFCISQVAKTLNDSETATFYRQQALNYQQLFNPETGFMQAKDTEGNFR PDFLDIRWGKDYAEGSAWQSSFAVYQDFAGLIKLYGSELAFEKKLIQLCNQAPNFNVEGY GFEIHEMSEMAAIDFGQLAISNQPSFHYPFLFSYIGKPEMAQPLLKQLMQTFNASPTGYP GDEDNGSMSAWYIFNSLGFYPVTPGTGEYVIGMPLVQTAEVKLSNGKQLTIQTSPNKVQQ QFIHEIQLNQEKHTAPYFTHQELLNGGTLDYQLGIVPNPQNTAERPFSLSTEK >gi|308151723|gb|GL476299.1| GENE 43 42732 - 44213 1677 493 aa, chain - ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 492 1 491 494 361 43.0 1e-99 MYRVMFVDDEYMILEGLKWIIPWQELGFEIVKTARSAQEALAFLETESIDVLLTDITMPE MSGIELIEQAKKKGHQFISLILSGYQEFDYVKKGMALQVQDYLLKPVNKQELLANIQRIK TELDQQKKSHARVRLYLENGLMRWLNDEISEGEYEELMQQFATIKPGDFTVLLVEAEMPF LETIKELFMKKGQLLFIESWMSTYHQLLLIYKGARQEAFLFIREIEAILAGQGQIFVGES VNEWETVYESYEKVKQLQAIETFYQEFLPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTI QRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNTL YALMQQVLAEVKNKPKIKKYSESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFK KETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF REQYQSNYAGVEE >gi|308151723|gb|GL476299.1| GENE 44 44225 - 45937 1669 570 aa, chain - ## HITS:1 COG:SPy1588 KEGG:ns NR:ns ## COG: SPy1588 COG2972 # Protein_GI_number: 15675475 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 566 6 568 574 360 36.0 4e-99 MKRIFKKLFKKKYLLNRLVQKYSLLLTSIILLTVAALCVYVTYTINLSIDSQKNNAVSQI DSYVTNKNNAATNMINELAGSASKIENMRKYMELSPPEYFDYTYSQWSEDRVSTHFGNNL STLFSTFPDLEEVIIRLDEFDQVLFANRTATNGKKMDMSSIKKHGFQLMRIISDPYTGQP LGELYTVFSSQELLGNQADLLKKSGINAFIYDSAGNQIFSEKAQFTKEEERQLDKRMHTD SDIQQVFHNRYDITEIESSGRSTILLLTSRRVLFQQLFMNYAAILGIGLLLIVILLVGLN RLFKRYSQQVQLILEATRAIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIY TLEIKQRDAHMRALQSQINPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNINQE KTTTLAEEISFCEKYVYLYQMRYPDQFAYKFEIEETIADVEIPKFIIQPLVENYFVHGID YQRQDNAIKVHAYREGEKIIVAVVDNGKGITANRLEEIRARLNQTEIETEQSIGLRNVHE RLQRFFGESYGLTIEGKEGEGTTIRLSFVA >gi|308151723|gb|GL476299.1| GENE 45 45909 - 46544 569 211 aa, chain - ## HITS:1 COG:SPy1589 KEGG:ns NR:ns ## COG: SPy1589 COG5578 # Protein_GI_number: 15675476 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 202 3 200 201 118 37.0 7e-27 MESTGIQRLFYLSWTVIKLNLLFVLFSLAGGIIFGVGPALQMMTDFILEEGMNYQAITVK RAFESWKAHFKRSNCYFLLFLFTLGFVFYNIYLAVQFTGIMWLIITFILFFVSLILVIFY IYMLLYEGSYFISTIDLMKLSFISIFLNLGVFFKVLFGVISIVALTWKMKGLLLFASFAL IMMWCAYVTRKNRQFIDGKLEQNEANLQKTV >gi|308151723|gb|GL476299.1| GENE 46 46615 - 48081 1246 488 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 488 1 491 491 484 48 1e-136 MKKWQKGLAVAGAAALAVGLSACGKSSKDAASKGDDSTPTLLMYRVGDKPDNYDQLIDNA NKIIEKKIGAKLKMEFVGWGDWDQKMSTIVASGESYDISLAQNYATNAQKGAYADLTDLA PKYAKEAYDQLPDNYIKGNTINGKLYAFPILGNSYGQQVLTFNKEYVDKYNLDISKVDGS YESATEVLKEFHKKEPNIAAFAIGQTFFATGNYDFPIGNQYPFAVKTTDTGSPKIINQYA DKDMINNLKVLHQWYKDGLIPTDAATSTTPYDLNTNTWFMRQETQGPMDYGDTILTQAAG KPLVSRPLTEPLKTTAQAQMANYVVANTSKNKEKAVELLGLLNSNPELLNGLVYGEEGKQ YEKVGDDRVKLLKDYTPTTHLSAWNTGNNLIIWPEESVTEDMVKERDKSIEEAKDSPILG FTFVNDKVKTEITNVATVMNRYAASLNTGTVDPEETLPKLMDDLKTAGWDKVQKEMQTQL DEYIQSQK >gi|308151723|gb|GL476299.1| GENE 47 48105 - 49028 945 307 aa, chain - ## HITS:1 COG:L128777 KEGG:ns NR:ns ## COG: L128777 COG0395 # Protein_GI_number: 15673478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Lactococcus lactis # 1 307 1 306 306 411 71.0 1e-115 MKKKKVTSVNVRSFNPTANLIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWP KEFSLEAYRYIFQGAMSQRIIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFF TLFALITMLFSPGMVANYLVMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSI IESARIDGASEMRIFVSIVLPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYL LMKIQNNLEFLSRSTDMGAAAQEGLGVLPSESARMAIVVLSTLPIALTYPFFQKYFVGGL TIGGVKE >gi|308151723|gb|GL476299.1| GENE 48 49040 - 49978 930 312 aa, chain - ## HITS:1 COG:L129753 KEGG:ns NR:ns ## COG: L129753 COG4209 # Protein_GI_number: 15673479 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Lactococcus lactis # 7 312 4 310 310 414 72.0 1e-115 MKKKNGFFQNVWRYKALILMALPGFIWFIFFFYIPVLANVVAFKDFHISPDGFLASLRES PWVGFENFKFLFASKDAWLITRNTILYNVVFLAFNLFFAIAFAIIMSELRNRRLVKVYHT MSLLPYFLSWMVINYFVYAFLSPDKGILNQWITGNGGTMINWYADPRWWPVIFVFLNVWK SLGYNSIIYYASVMGIDPTYYEAAMVDGANKWQQIKNVTIPQILPMMSVLLILNIGGIFR ADFGLFYIVPRNSGALYNVTSVLDTYIYNGLTATGDVGMTAAAALYQSVVGACLLLIANL VVRRIEPDSALF >gi|308151723|gb|GL476299.1| GENE 49 50535 - 51518 955 327 aa, chain - ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 327 1173 1499 1499 489 96.0 1e-137 VNNAKPKLGEAIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSVGDEPKPTSLK ETNGTITAEYPSITDMKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPPEEPEVPVVPE TNAGKLTATKTVNNAKPKLGETIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTS VGDEPKPTSLKETNGTITAEYPSITDMKERSIRFKVIVNEEAKAGEIILNKAKVDDGINP PEEPEVPITPEEPAKNKKETKKVVTDQNKPTKNSKNEIAINKKETSKSSYLPKTGEKVQK IFAYLGVGLILIVLILYVIKRNKEKEE