Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:27:44 2011
 Seq name: gi|223713597|gb|ACDM01000001.1| Escherichia sp. 4_1_40B cont1.1, whole genome shotgun sequence 
 Length of sequence - 25466 bp
 Number of predicted genes - 27, with homology - 27
 Number of transcription units - 16, operones - 5 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        25 -        84    3.9 
     1     1 Tu  1     .       +    CDS        223 -      1611   1051  ## COG0477 Permeases of the major facilitator superfamily
     2     2 Op  1   3/0.889   -    CDS       1608 -      1931    275  ## COG5544 Predicted periplasmic lipoprotein
                               -    Term      1938 -      1975    3.7 
     3     2 Op  2   3/0.889   -    CDS       1977 -      3332   1368  ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes
     4     3 Op  1   3/0.889   -    CDS       3446 -      6106   2370  ## COG1042 Acyl-CoA synthetase (NDP forming)
     5     3 Op  2   3/0.889   -    CDS       6138 -      6662    458  ## COG3148 Uncharacterized conserved protein
                               -    Term      6866 -      6898    5.4 
     6     4 Tu  1     .       -    CDS       6905 -      7324    178  ## PROTEIN SUPPORTED gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein
                               -    Prom      7383 -      7442    6.1 
                               +    Prom      7332 -      7391    3.2 
     7     5 Tu  1     .       +    CDS       7531 -      8568    956  ## COG0566 rRNA methylases
                               +    Term      8747 -      8787    0.1 
                               -    Term      8562 -      8601    5.1 
     8     6 Tu  1     .       -    CDS       8616 -      9305    724  ## COG0692 Uracil DNA glycosylase
                               -    Prom      9476 -      9535    5.9 
                               +    Prom      9367 -      9426    7.3 
     9     7 Tu  1     .       +    CDS       9610 -      9993    527  ## COG3445 Acid-induced glycyl radical enzyme
                               +    Term     10016 -     10051    7.4 
                               -    Term     10004 -     10039    7.4 
    10     8 Tu  1     .       -    CDS      10049 -     10636    489  ## COG1280 Putative threonine efflux protein
                               -    Prom     10673 -     10732    4.3 
                               +    Prom     10654 -     10713    3.8 
    11     9 Tu  1     .       +    CDS      10739 -     11620    525  ## COG0583 Transcriptional regulator
                               +    Term     11628 -     11657   -0.5 
    12    10 Tu  1     .       -    CDS      11829 -     13163   1545  ## COG0513 Superfamily II DNA and RNA helicases
                               -    Prom     13295 -     13354    4.2 
                               +    Prom     13197 -     13256    2.4 
    13    11 Tu  1     .       +    CDS      13295 -     14032    719  ## COG4123 Predicted O-methyltransferase
                               +    Term     14197 -     14234   -0.9 
    14    12 Tu  1     .       -    CDS      14017 -     15639   1289  ## COG0029 Aspartate oxidase
                               -    Prom     15878 -     15937    5.1 
                               +    Prom     15770 -     15829    5.0 
    15    13 Op  1     .       +    CDS      15895 -     16050     80  ## ECBD_1107 hypothetical protein
    16    13 Op  2  11/0.000   +    CDS      16047 -     16622    356  ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
    17    13 Op  3  10/0.000   +    CDS      16655 -     17305    516  ## COG3073 Negative regulator of sigma E activity
    18    13 Op  4   8/0.000   +    CDS      17305 -     18261    707  ## COG3026 Negative regulator of sigma E activity
    19    13 Op  5   4/0.778   +    CDS      18258 -     18737    376  ## COG3086 Positive regulator of sigma E activity
                               +    Term     18748 -     18792   -0.9 
                               +    Prom     18791 -     18850    5.6 
    20    14 Op  1  14/0.000   +    CDS      18935 -     20734   2154  ## COG0481 Membrane GTPase LepA
    21    14 Op  2     .       +    CDS      20750 -     21724   1063  ## COG0681 Signal peptidase I
                               +    Term     21737 -     21782   14.1 
    22    15 Tu  1     .       -    CDS      21774 -     21938     65  ## ECSP_3513 hypothetical protein
                               -    Prom     22092 -     22151    3.2 
                               +    Prom     21775 -     21834    1.8 
    23    16 Op  1  18/0.000   +    CDS      21996 -     22676    630  ## COG0571 dsRNA-specific ribonuclease
    24    16 Op  2  16/0.000   +    CDS      22673 -     23578   1022  ## COG1159 GTPase
    25    16 Op  3   9/0.000   +    CDS      23590 -     24318    638  ## COG1381 Recombinational DNA repair protein (RecF pathway)
    26    16 Op  4   8/0.000   +    CDS      24330 -     25061    973  ## COG0854 Pyridoxal phosphate biosynthesis protein
    27    16 Op  5     .       +    CDS      25061 -     25441    299  ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)
Predicted protein(s)
>gi|223713597|gb|ACDM01000001.1| GENE     1       223  -      1611   1051    462 aa, chain + ## HITS:1  COG:kgtP KEGG:ns NR:ns ## COG: kgtP COG0477 # Protein_GI_number: 16130512 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 31     462       1     432     432     763  100.0  0
MQQMYNISFTKKNKQKRPTKASDYGRRHNGMAESTVTADSKLTSSDTRRRIWAIVGASSG
NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH
GRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS
EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVV
ALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYL
VNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSAL
QNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAE
YVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL
>gi|223713597|gb|ACDM01000001.1| GENE     2      1608  -      1931    275    107 aa, chain - ## HITS:1  COG:STM2653 KEGG:ns NR:ns ## COG: STM2653 COG5544 # Protein_GI_number: 16765973 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Salmonella typhimurium LT2 # 1     107       1     107     107     155   76.0  2e-38
MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFG
LMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVWQLTRH
>gi|223713597|gb|ACDM01000001.1| GENE     3      1977  -      3332   1368    451 aa, chain - ## HITS:1  COG:ECs3452 KEGG:ns NR:ns ## COG: ECs3452 COG1502 # Protein_GI_number: 15832706 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli O157:H7 # 1     431       2     432     452     877  100.0  0
MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQ
DDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVD
VPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMS
DIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSV
TPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGD
KTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKG
MWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRD
LQSIADYPVKVRKLIRRLRRIRIDRLISRIL
>gi|223713597|gb|ACDM01000001.1| GENE     4      3446  -      6106   2370    886 aa, chain - ## HITS:1  COG:yfiQ_1 KEGG:ns NR:ns ## COG: yfiQ_1 COG1042 # Protein_GI_number: 16130509 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Escherichia coli K12 # 1     709       1     709     709    1366  100.0  0
MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAW
PDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQHEDLRACALRHNMR
LLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIAL
GDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRSPA
AQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAAP
AALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILLH
SQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFSE
AGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPSNLTSNTAEAHLLLQQAIAEGATS
LDTHEVQPILQAYGMNTLPTWIASDSTEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVML
YLRTANEVQQAANAIFDRVKMAWPQARVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIM
LGEGGVEWRPEDQAVVALPPLNMNLARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQV
SNLIVDCPEIQRLDIHPLLASGSEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVEL
KNGERCLFRPILPEDEPQLQQFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMA
FVAVRRIDQTEEILGVTRAISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGL
QRLNGITMPNNRGMVALARKLGFNVDIQLEEGIVGLTLNLAQREES
>gi|223713597|gb|ACDM01000001.1| GENE     5      6138  -      6662    458    174 aa, chain - ## HITS:1  COG:yfiP KEGG:ns NR:ns ## COG: yfiP COG3148 # Protein_GI_number: 16130508 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     174      67     240     240     347  100.0  8e-96
MFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLELVQNPDYQPMVVFPASYADEQ
REVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEG
QYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV
>gi|223713597|gb|ACDM01000001.1| GENE     6      6905  -      7324    178    139 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein [Methanocorpusculum labreanum Z] # 55     136      35     115     120 73  46 2e-12
MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVIDFW
APWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVD
MLNGAVPKAPFDSWLNESL
>gi|223713597|gb|ACDM01000001.1| GENE     7      7531  -      8568    956    345 aa, chain + ## HITS:1  COG:ECs3447 KEGG:ns NR:ns ## COG: ECs3447 COG0566 # Protein_GI_number: 15832701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Escherichia coli O157:H7 # 1     345       1     345     345     672  100.0  0
MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
>gi|223713597|gb|ACDM01000001.1| GENE     8      8616  -      9305    724    229 aa, chain - ## HITS:1  COG:ung KEGG:ns NR:ns ## COG: ung COG0692 # Protein_GI_number: 16130505 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Escherichia coli K12 # 1     229       1     229     229     466  100.0  1e-131
MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVI
LGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVL
LLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRH
HVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMPVLPAESE
>gi|223713597|gb|ACDM01000001.1| GENE     9      9610  -      9993    527    127 aa, chain + ## HITS:1  COG:ECs3445 KEGG:ns NR:ns ## COG: ECs3445 COG3445 # Protein_GI_number: 15832699 # Func_class: R General function prediction only # Function: Acid-induced glycyl radical enzyme # Organism: Escherichia coli O157:H7 # 1     127       1     127     127     243  100.0  9e-65
MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVVAVSKLGDIEYREVPVE
VKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIA
RTFTESL
>gi|223713597|gb|ACDM01000001.1| GENE    10     10049  -     10636    489    195 aa, chain - ## HITS:1  COG:yfiK KEGG:ns NR:ns ## COG: yfiK COG1280 # Protein_GI_number: 16130503 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1     195       1     195     195     329  100.0  2e-90
MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGI
SFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQAKPISFWASFALQFVNVKI
ILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRLFRQYGRQLNI
VLALLLVYCAVRIFY
>gi|223713597|gb|ACDM01000001.1| GENE    11     10739  -     11620    525    293 aa, chain + ## HITS:1  COG:yfiE KEGG:ns NR:ns ## COG: yfiE COG0583 # Protein_GI_number: 16130502 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     293      16     308     308     571  100.0  1e-163
MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFSVQLFEKIGRRMCLTRE
GKKLLPHIYELTRVMDTLREAAKKESDPDGELRVVSGETLLSYRMPQVLQRFRQRAPKVR
LSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEP
GRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIELISIESIKRCVAANIGVSYLPRF
AVAKELECGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCVEESFVAG
>gi|223713597|gb|ACDM01000001.1| GENE    12     11829  -     13163   1545    444 aa, chain - ## HITS:1  COG:ECs3442 KEGG:ns NR:ns ## COG: ECs3442 COG0513 # Protein_GI_number: 15832696 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1     444       1     444     444     778  100.0  0
MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV
HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN
VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL
GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH
RDTKNIGKRRKPSGTGVPPQTTEE
>gi|223713597|gb|ACDM01000001.1| GENE    13     13295  -     14032    719    245 aa, chain + ## HITS:1  COG:yfiC KEGG:ns NR:ns ## COG: yfiC COG4123 # Protein_GI_number: 16130500 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Escherichia coli K12 # 1     245      41     285     285     509  100.0  1e-144
MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLAL
MLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLII
SNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTEL
ALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQA
FYLFM
>gi|223713597|gb|ACDM01000001.1| GENE    14     14017  -     15639   1289    540 aa, chain - ## HITS:1  COG:nadB KEGG:ns NR:ns ## COG: nadB COG0029 # Protein_GI_number: 16130499 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Escherichia coli K12 # 1     540       1     540     540    1130  100.0  0
MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDET
DSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTR
EGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVV
GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEF
NQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHE
MKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVD
DHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLP
PWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH
FRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSPGNHYINR
>gi|223713597|gb|ACDM01000001.1| GENE    15     15895  -     16050     80     51 aa, chain + ## HITS:1  COG:no KEGG:ECBD_1107 NR:ns ## KEGG: ECBD_1107 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      51       1      51      51      66  100.0  3e-10
MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFGLGRLYLG
>gi|223713597|gb|ACDM01000001.1| GENE    16     16047  -     16622    356    191 aa, chain + ## HITS:1  COG:ECs3439 KEGG:ns NR:ns ## COG: ECs3439 COG1595 # Protein_GI_number: 15832693 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Escherichia coli O157:H7 # 1     191       1     191     191     360  100.0  1e-100
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA
LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN
LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA
IDNKVQPLIRR
>gi|223713597|gb|ACDM01000001.1| GENE    17     16655  -     17305    516    216 aa, chain + ## HITS:1  COG:rseA KEGG:ns NR:ns ## COG: rseA COG3073 # Protein_GI_number: 16130497 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Escherichia coli K12 # 1     216       1     216     216     329  100.0  2e-90
MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM
AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH
YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY
ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ
>gi|223713597|gb|ACDM01000001.1| GENE    18     17305  -     18261    707    318 aa, chain + ## HITS:1  COG:ECs3437 KEGG:ns NR:ns ## COG: ECs3437 COG3026 # Protein_GI_number: 15832691 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Escherichia coli O157:H7 # 1     318       1     318     318     614  100.0  1e-176
MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY
RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK
RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL
EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP
LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL
PPQTAKRIAENIKFGAAQ
>gi|223713597|gb|ACDM01000001.1| GENE    19     18258  -     18737    376    159 aa, chain + ## HITS:1  COG:rseC KEGG:ns NR:ns ## COG: rseC COG3086 # Protein_GI_number: 16130495 # Func_class: T Signal transduction mechanisms # Function: Positive regulator of sigma E activity # Organism: Escherichia coli K12 # 1     159       1     159     159     294  100.0  5e-80
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV
PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI
ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ
>gi|223713597|gb|ACDM01000001.1| GENE    20     18935  -     20734   2154    599 aa, chain + ## HITS:1  COG:ECs3435 KEGG:ns NR:ns ## COG: ECs3435 COG0481 # Protein_GI_number: 15832689 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Escherichia coli O157:H7 # 1     599       1     599     599    1167  100.0  0
MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVT
LDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM
EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI
PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIF
TPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLF
PVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD
LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVIT
LCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM
VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARS
TVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK
>gi|223713597|gb|ACDM01000001.1| GENE    21     20750  -     21724   1063    324 aa, chain + ## HITS:1  COG:lepB KEGG:ns NR:ns ## COG: lepB COG0681 # Protein_GI_number: 16130493 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Escherichia coli K12 # 1     324       1     324     324     652  100.0  0
MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGDSLDKATLKKVAPKPGW
LETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTL
IETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENA
LPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILT
VPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAI
WMSFDKQEGEWPTGLRLSRIGGIH
>gi|223713597|gb|ACDM01000001.1| GENE    22     21774  -     21938     65     54 aa, chain - ## HITS:1  COG:no KEGG:ECSP_3513 NR:ns ## KEGG: ECSP_3513 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      54       1      54      54      99   96.0  3e-20
MVLLTASLQFQFTGIWGPTLFRVPWQPGGANLKLRGNILYTTTGDVVSHGRFIS
>gi|223713597|gb|ACDM01000001.1| GENE    23     21996  -     22676    630    226 aa, chain + ## HITS:1  COG:ECs3433 KEGG:ns NR:ns ## COG: ECs3433 COG0571 # Protein_GI_number: 15832687 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Escherichia coli O157:H7 # 1     226       1     226     226     422  100.0  1e-118
MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRF
PRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALI
GGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVR
GEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLELE
>gi|223713597|gb|ACDM01000001.1| GENE    24     22673  -     23578   1022    301 aa, chain + ## HITS:1  COG:era KEGG:ns NR:ns ## COG: era COG1159 # Protein_GI_number: 16130491 # Func_class: R General function prediction only # Function: GTPase # Organism: Escherichia coli K12 # 1     301       1     301     301     600  100.0  1e-172
MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY
VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVI
LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF
PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE
GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD
L
>gi|223713597|gb|ACDM01000001.1| GENE    25     23590  -     24318    638    242 aa, chain + ## HITS:1  COG:ECs3431 KEGG:ns NR:ns ## COG: ECs3431 COG1381 # Protein_GI_number: 15832685 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Escherichia coli O157:H7 # 1     242       1     242     242     470  100.0  1e-132
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLRF
GGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHCIQSL
AGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDN
KTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTH
YE
>gi|223713597|gb|ACDM01000001.1| GENE    26     24330  -     25061    973    243 aa, chain + ## HITS:1  COG:ECs3430 KEGG:ns NR:ns ## COG: ECs3430 COG0854 # Protein_GI_number: 15832684 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Escherichia coli O157:H7 # 1     243       1     243     243     438  100.0  1e-123
MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRI
LRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDAC
KRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAAT
FAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE
ARG
>gi|223713597|gb|ACDM01000001.1| GENE    27     25061  -     25441    299    126 aa, chain + ## HITS:1  COG:acpS KEGG:ns NR:ns ## COG: acpS COG0736 # Protein_GI_number: 16130488 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Escherichia coli K12 # 1     126       1     126     126     240  100.0  5e-64
MAILGLGTDIVEIARIEAVIARSGDRLARRVLSDNEWAIWKTHHQPVRFLAKRFAVKEAA
AKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKLGVANMHVTLADERHYACA
TVIIES
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:28:43 2011
 Seq name: gi|223713596|gb|ACDM01000002.1| Escherichia sp. 4_1_40B cont1.2, whole genome shotgun sequence 
 Length of sequence - 172265 bp
 Number of predicted genes - 156, with homology - 156
 Number of transcription units - 75, operones - 38 average op.length -  3.1
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       621 -       655    1.1 
     1     1 Op  1   1/0.897   -    CDS        656 -       916    287  ## COG1145 Ferredoxin
     2     1 Op  2     .       -    CDS        972 -      1820    882  ## COG1737 Transcriptional regulators
                               +    Prom      1836 -      1895    3.7 
     3     2 Op  1   2/0.759   +    CDS       2029 -      2664    500  ## COG0560 Phosphoserine phosphatase
     4     2 Op  2     .       +    CDS       2722 -      3225    458  ## COG0590 Cytosine/adenosine deaminases
     5     3 Tu  1     .       -    CDS       3222 -      4778   1748  ## COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
                               -    Prom      4926 -      4985    4.0 
     6     4 Tu  1     .       +    CDS       5039 -      8923   4409  ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
                               +    Term      8984 -      9013    0.4 
     7     5 Tu  1     .       +    CDS       9526 -     10908    995  ## COG0642 Signal transduction histidine kinase
                               +    Prom     10942 -     11001    1.7 
     8     6 Op  1     .       +    CDS      11073 -     11786    504  ## EcHS_A2708 hypothetical protein
     9     6 Op  2   4/0.517   +    CDS      11776 -     13110   1283  ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
    10     6 Op  3     .       +    CDS      13171 -     13509    503  ## COG0347 Nitrogen regulatory protein PII
    11     7 Tu  1     .       -    CDS      13554 -     14744   1303  ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
                               -    Prom     14782 -     14841    7.3 
                               +    Prom     14948 -     15007    5.6 
    12     8 Tu  1     .       +    CDS      15072 -     16325   1576  ## COG0112 Glycine/serine hydroxymethyltransferase
                               +    Term     16438 -     16474    2.4 
                               -    Term     16474 -     16503    2.1 
    13     9 Tu  1     .       -    CDS      16523 -     17716   1116  ## COG1940 Transcriptional regulator/sugar kinase
                               -    Prom     17741 -     17800    3.6 
                               +    Prom     17630 -     17689    2.9 
    14    10 Tu  1     .       +    CDS      17834 -     21115   3042  ## JW5405 conserved hypothetical protein
                               +    Prom     21124 -     21183    9.9 
    15    11 Op  1  16/0.000   +    CDS      21212 -     22195   1095  ## COG1879 ABC-type sugar transport system, periplasmic component
    16    11 Op  2  21/0.000   +    CDS      22218 -     23729    176  ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16
    17    11 Op  3   3/0.621   +    CDS      23754 -     24752   1171  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
    18    11 Op  4   2/0.759   +    CDS      24827 -     25879   1062  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
    19    11 Op  5     .       +    CDS      25891 -     26763    760  ## COG2017 Galactose mutarotase and related enzymes
                               +    Term     26773 -     26816    4.6 
                               -    Term     26761 -     26804    8.4 
    20    12 Op  1   1/0.897   -    CDS      26811 -     27233    460  ## COG2259 Predicted membrane protein
    21    12 Op  2   6/0.172   -    CDS      27330 -     28532   1059  ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases
    22    12 Op  3   3/0.621   -    CDS      28542 -     29354    808  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
    23    12 Op  4   4/0.517   -    CDS      29351 -     29671    148  ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
    24    12 Op  5   6/0.172   -    CDS      29671 -     30189    351  ## COG5517 Small subunit of phenylpropionate dioxygenase
    25    12 Op  6     .       -    CDS      30186 -     31547   1289  ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
                               -    Prom     31596 -     31655    2.2 
                               +    Prom     31505 -     31564    5.4 
    26    13 Tu  1     .       +    CDS      31683 -     32573    759  ## COG0583 Transcriptional regulator
                               +    Prom     32616 -     32675    2.1 
    27    14 Tu  1     .       +    CDS      32733 -     33872    951  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     34036 -     34100   -0.8 
    28    15 Tu  1     .       -    CDS      33864 -     35048    824  ## COG3711 Transcriptional antiterminator
                               -    Prom     35250 -     35309    5.2 
    29    16 Tu  1     .       -    CDS      35335 -     36189    772  ## COG1073 Hydrolases of the alpha/beta superfamily
                               -    Prom     36227 -     36286    2.0 
    30    17 Tu  1     .       -    CDS      36334 -     37137   1033  ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family
                               -    Prom     37173 -     37232    3.9 
    31    18 Tu  1     .       +    CDS      37256 -     37996   1028  ## COG0565 rRNA methylase
                               +    Prom     38354 -     38413    4.7 
    32    19 Op  1  13/0.000   +    CDS      38448 -     38936    524  ## COG1959 Predicted transcriptional regulator
    33    19 Op  2  20/0.000   +    CDS      39048 -     40262   1706  ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
    34    19 Op  3  14/0.000   +    CDS      40290 -     40676    588  ## COG0822 NifU homolog involved in Fe-S cluster formation
    35    19 Op  4  10/0.034   +    CDS      40693 -     41016    461  ## COG0316 Uncharacterized conserved protein
                               +    Term     41032 -     41071    5.0 
    36    20 Op  1  11/0.034   +    CDS      41112 -     41627    605  ## COG1076 DnaJ-domain-containing proteins 1
    37    20 Op  2  13/0.000   +    CDS      41644 -     43494   2376  ## COG0443 Molecular chaperone
    38    20 Op  3   9/0.034   +    CDS      43496 -     43831    385  ## COG0633 Ferredoxin
    39    20 Op  4   2/0.759   +    CDS      43843 -     44043    376  ## COG2975 Uncharacterized protein conserved in bacteria
                               +    Term     44178 -     44209    3.9 
                               +    Prom     44064 -     44123    1.8 
    40    21 Tu  1     .       +    CDS      44221 -     45504   1499  ## COG0260 Leucyl aminopeptidase
                               +    Prom     45535 -     45594    7.1 
    41    22 Tu  1     .       +    CDS      45646 -     46422    701  ## SFV_2570 enhanced serine sensitivity protein SseB
                               +    Term     46496 -     46522    1.0 
                               -    Term     47182 -     47223    9.0 
    42    23 Tu  1     .       -    CDS      47239 -     48084    841  ## COG2897 Rhodanese-related sulfurtransferase
                               -    Prom     48241 -     48300    2.7 
                               +    Prom     48194 -     48253    4.2 
    43    24 Op  1   1/0.897   +    CDS      48291 -     49388    870  ## COG2373 Large extracellular alpha-helical protein
    44    24 Op  2   7/0.069   +    CDS      49349 -     53251   3589  ## COG2373 Large extracellular alpha-helical protein
    45    24 Op  3   1/0.897   +    CDS      53252 -     55564   1150  ## COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC
                               +    Prom     55604 -     55663    3.7 
    46    25 Op  1     .       +    CDS      55713 -     56144    510  ## COG0105 Nucleoside diphosphate kinase
                               +    Prom     56148 -     56207    2.5 
    47    25 Op  2     .       +    CDS      56294 -     57448   1374  ## COG0820 Predicted Fe-S-cluster redox enzyme
                               +    Term     57453 -     57502   13.6 
                               +    Prom     57585 -     57644    6.0 
    48    26 Op  1  10/0.034   +    CDS      57733 -     58746    596  ## COG1426 Uncharacterized protein conserved in bacteria
    49    26 Op  2  11/0.034   +    CDS      58773 -     59891   1209  ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
                               +    Term     59901 -     59932    4.5 
    50    27 Op  1  12/0.000   +    CDS      60002 -     61276   1488  ## COG0124 Histidyl-tRNA synthetase
    51    27 Op  2   9/0.034   +    CDS      61294 -     61914    672  ## COG2976 Uncharacterized protein conserved in bacteria
    52    27 Op  3   7/0.069   +    CDS      61925 -     63103   1179  ## COG1520 FOG: WD40-like repeat
                               +    Term     63124 -     63165   10.4 
                               +    Prom     63126 -     63185    1.8 
    53    28 Op  1     .       +    CDS      63221 -     64693   2033  ## COG1160 Predicted GTPases
    54    28 Op  2     .       +    CDS      64763 -     64978    143  ## S2728 hypothetical protein
    55    29 Tu  1     .       -    CDS      64975 -     66345   1109  ## COG1570 Exonuclease VII, large subunit
                               -    Prom     66380 -     66439    5.0 
                               +    Prom     66411 -     66470    6.7 
    56    30 Op  1  13/0.000   +    CDS      66507 -     67973   1814  ## COG0516 IMP dehydrogenase/GMP reductase
                               +    Term     67980 -     68015    6.1 
    57    30 Op  2     .       +    CDS      68042 -     69619   1954  ## COG0519 GMP synthase, PP-ATPase domain/subunit
                               +    Term     69648 -     69679    3.4 
                               -    Term     69627 -     69674    6.9 
    58    31 Op  1     .       -    CDS      69712 -     70251    637  ## ECP_2508 hypothetical protein
    59    31 Op  2     .       -    CDS      70267 -     70782    381  ## SSON_2587 putative outer membrane lipoprotein
                               -    Prom     70904 -     70963    9.1 
                               -    Term     71001 -     71042    1.3 
    60    32 Tu  1     .       -    CDS      71096 -     71287    131  ## EcSMS35_2653 hypothetical protein
                               -    Prom     71389 -     71448    7.7 
                               +    Prom     70894 -     70953    8.3 
    61    33 Op  1     .       +    CDS      71132 -     71422    109  ## EC55989_2789 hypothetical protein
                               +    Prom     71443 -     71502    6.5 
    62    33 Op  2     .       +    CDS      71639 -     73882   1542  ## COG2200 FOG: EAL domain
                               +    Term     74088 -     74134    1.9 
                               -    Term     73875 -     73915   10.3 
    63    34 Op  1  11/0.034   -    CDS      73921 -     75462   1463  ## COG0248 Exopolyphosphatase
    64    34 Op  2   4/0.517   -    CDS      75467 -     77533   2012  ## COG0855 Polyphosphate kinase
                               -    Prom     77569 -     77628    2.8 
                               -    Term     77656 -     77687    2.4 
    65    35 Op  1  21/0.000   -    CDS      77705 -     78343    692  ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
    66    35 Op  2     .       -    CDS      78343 -     79380   1238  ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase
                               -    Prom     79424 -     79483    7.0 
                               +    Prom     79610 -     79669    7.5 
    67    36 Tu  1   5/0.310   +    CDS      79705 -     80331    855  ## COG0035 Uracil phosphoribosyltransferase
                               +    Term     80350 -     80382    3.1 
                               +    Prom     80333 -     80392    7.5 
    68    37 Op  1   6/0.172   +    CDS      80417 -     81706   1017  ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18
    69    37 Op  2     .       +    CDS      81756 -     82502    629  ## COG0593 ATPase involved in DNA replication initiation
    70    38 Op  1   6/0.172   -    CDS      82640 -     82999    546  ## COG1393 Arsenate reductase and related proteins, glutaredoxin family
    71    38 Op  2     .       -    CDS      83020 -     84483   1724  ## COG4783 Putative Zn-dependent protease, contains TPR repeats
                               -    Prom     84552 -     84611    3.1 
                               +    Prom     84567 -     84626    4.5 
    72    39 Tu  1     .       +    CDS      84696 -     85757   1446  ## COG0628 Predicted permease
                               +    Term     85761 -     85802    7.3 
                               -    Term     85747 -     85790   11.5 
    73    40 Op  1   1/0.897   -    CDS      85795 -     86643    488  ## COG2116 Formate/nitrite family of transporters
    74    40 Op  2     .       -    CDS      86665 -     88677   1540  ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
    75    40 Op  3     .       -    CDS      88707 -     89120    326  ## SSON_2571 putative protein processing element
    76    40 Op  4   6/0.172   -    CDS      89113 -     89871    489  ## COG3260 Ni,Fe-hydrogenase III small subunit
    77    40 Op  5   5/0.310   -    CDS      89868 -     90413    385  ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
    78    40 Op  6   7/0.069   -    CDS      90423 -     92090   1818  ## COG3261 Ni,Fe-hydrogenase III large subunit
    79    40 Op  7   7/0.069   -    CDS      92080 -     93660   1368  ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
    80    40 Op  8   3/0.621   -    CDS      93665 -     94315    623  ## COG4237 Hydrogenase 4 membrane component (E)
    81    40 Op  9   1/0.897   -    CDS      94327 -     95766   1257  ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
    82    40 Op 10  10/0.034   -    CDS      95783 -     96730    910  ## COG0650 Formate hydrogenlyase subunit 4
    83    40 Op 11   4/0.517   -    CDS      96741 -     98759   1582  ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
    84    40 Op 12   1/0.897   -    CDS      98759 -     99376    305  ## COG1142 Fe-S-cluster-containing hydrogenase components 2
                               -    Prom     99418 -     99477    5.0 
    85    41 Op  1   4/0.517   -    CDS      99629 -    100099    568  ## COG1225 Peroxiredoxin
    86    41 Op  2     .       -    CDS     100099 -    100671    375  ## COG2716 Glycine cleavage system regulatory protein
                               -    Prom    100700 -    100759    6.0 
                               +    Prom    100559 -    100618    3.0 
    87    42 Op  1   9/0.034   +    CDS     100817 -    101695    774  ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase
    88    42 Op  2     .       +    CDS     101712 -    102746    827  ## COG3317 Uncharacterized lipoprotein
                               +    Term    102754 -    102785    3.2 
                               -    Term    102542 -    102572    2.7 
    89    43 Tu  1     .       -    CDS     102657 -    102887     75  ## SDY_2665 hypothetical protein
                               -    Prom    102915 -    102974    3.6 
    90    44 Tu  1     .       +    CDS     102959 -    103672   1163  ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase
                               +    Prom    103766 -    103825    3.6 
    91    45 Op  1   4/0.517   +    CDS     103909 -    104703    868  ## COG2321 Predicted metalloprotease
    92    45 Op  2     .       +    CDS     104757 -    106733   1341  ## COG1444 Predicted P-loop ATPase fused to an acetyltransferase
    93    46 Tu  1     .       +    CDS     106807 -    107505    795  ## COG0400 Predicted esterase
                               +    Term    107597 -    107630   -0.9 
    94    47 Op  1     .       -    CDS     107615 -    107815    351  ## G2583_2995 hypothetical protein
    95    47 Op  2   9/0.034   -    CDS     107843 -    108970   1173  ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
    96    47 Op  3     .       -    CDS     108974 -    109330    362  ## COG1393 Arsenate reductase and related proteins, glutaredoxin family
                               -    Prom    109376 -    109435    5.7 
                               -    Term    109444 -    109489    2.3 
    97    48 Tu  1     .       -    CDS     109569 -    109691     78  ## ECP_2483 hypothetical protein
                               -    Prom    109735 -    109794    2.1 
                               -    Term    109816 -    109864    7.5 
    98    49 Tu  1     .       -    CDS     109869 -    112982   3301  ## COG0841 Cation/multidrug efflux pump
                               -    Prom    113082 -    113141    4.7 
    99    50 Tu  1     .       -    CDS     113146 -    114846   1259  ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific
                               -    Prom    114924 -    114983    2.8 
                               +    Prom    114906 -    114965    2.3 
   100    51 Op  1   3/0.621   +    CDS     115052 -    117031   1526  ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases
   101    51 Op  2     .       +    CDS     117099 -    117674    644  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
   102    52 Tu  1     .       +    CDS     117923 -    118843    665  ## B21_02319 hypothetical protein
                               -    Term    118865 -    118922    5.5 
   103    53 Op  1  13/0.000   -    CDS     118938 -    120941   2324  ## COG0021 Transketolase
   104    53 Op  2     .       -    CDS     120961 -    121911   1007  ## COG0176 Transaldolase
                               -    Prom    122058 -    122117    3.3 
                               +    Prom    122020 -    122079    3.5 
   105    54 Tu  1     .       +    CDS     122200 -    124479   2653  ## COG0281 Malic enzyme
                               +    Term    124495 -    124535   10.0 
                               +    Prom    124541 -    124600    5.6 
   106    55 Op  1   4/0.517   +    CDS     124771 -    125106    393  ## COG4810 Ethanolamine utilization protein
   107    55 Op  2   4/0.517   +    CDS     125119 -    125598    377  ## COG4917 Ethanolamine utilization protein
   108    55 Op  3   4/0.517   +    CDS     125573 -    126274    748  ## COG4766 Ethanolamine utilization protein
   109    55 Op  4   4/0.517   +    CDS     126271 -    127074    868  ## COG4812 Ethanolamine utilization cobalamin adenosyltransferase
   110    55 Op  5   1/0.897   +    CDS     127071 -    128087    842  ## COG0280 Phosphotransacetylase
   111    55 Op  6   4/0.517   +    CDS     128126 -    128419    481  ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein
                               +    Term    128427 -    128464    5.6 
   112    56 Op  1   4/0.517   +    CDS     128526 -    128813    239  ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein
   113    56 Op  2   4/0.517   +    CDS     128825 -    130228    837  ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P
   114    56 Op  3   2/0.759   +    CDS     130239 -    131075    934  ## COG4820 Ethanolamine utilization protein, possible chaperonin
   115    56 Op  4   2/0.759   +    CDS     131065 -    132252   1201  ## COG1454 Alcohol dehydrogenase, class IV
                               +    Prom    132376 -    132435    1.7 
   116    57 Op  1   4/0.517   +    CDS     132469 -    133695   1637  ## COG3192 Ethanolamine utilization protein
   117    57 Op  2   5/0.310   +    CDS     133692 -    135095   1454  ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition
   118    57 Op  3   8/0.069   +    CDS     135107 -    136468   1625  ## COG4303 Ethanolamine ammonia-lyase, large subunit
   119    57 Op  4   6/0.172   +    CDS     136489 -    137376   1022  ## COG4302 Ethanolamine ammonia-lyase, small subunit
   120    57 Op  5   4/0.517   +    CDS     137386 -    138045    715  ## COG4816 Ethanolamine utilization protein
   121    57 Op  6   2/0.759   +    CDS     138058 -    138558    431  ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein
   122    57 Op  7     .       +    CDS     138604 -    139656    999  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Term    139387 -    139420   -0.6 
   123    58 Op  1   4/0.517   -    CDS     139662 -    140561    685  ## COG0408 Coproporphyrinogen III oxidase
   124    58 Op  2     .       -    CDS     140565 -    141434    806  ## COG0860 N-acetylmuramoyl-L-alanine amidase
                               -    Prom    141543 -    141602    4.2 
                               +    Prom    141561 -    141620    4.3 
   125    59 Op  1     .       +    CDS     141648 -    142073    579  ## COG0456 Acetyltransferases
   126    59 Op  2     .       +    CDS     142060 -    142509    302  ## G2583_2964 hypothetical protein
   127    59 Op  3     .       +    CDS     142570 -    143145    466  ## SSON_2521 hypothetical protein
                               +    Term    143201 -    143232    2.1 
   128    60 Tu  1     .       +    CDS     143241 -    144140   1074  ## COG2837 Predicted iron-dependent peroxidase
                               +    Term    144159 -    144208    1.5 
                               -    Term    144152 -    144191    5.3 
   129    61 Op  1   1/0.897   -    CDS     144380 -    145684   1295  ## COG1680 Beta-lactamase class C and other penicillin binding proteins
   130    61 Op  2   9/0.034   -    CDS     145689 -    147113   1601  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
   131    61 Op  3     .       -    CDS     147117 -    148013    828  ## COG2103 Predicted sugar phosphate isomerase
                               -    Prom    148054 -    148113    6.4 
                               +    Prom    147986 -    148045    4.2 
   132    62 Tu  1     .       +    CDS     148177 -    149034    797  ## COG1737 Transcriptional regulators
                               +    Prom    149055 -    149114    3.9 
   133    63 Tu  1     .       +    CDS     149163 -    149954    248  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
                               +    Term    149967 -    150003    5.1 
                               +    Prom    150177 -    150236    4.8 
   134    64 Op  1   7/0.069   +    CDS     150258 -    151274   1398  ## COG4150 ABC-type sulfate transport system, periplasmic component
   135    64 Op  2  17/0.000   +    CDS     151274 -    152107   1007  ## COG0555 ABC-type sulfate transport system, permease component
   136    64 Op  3  17/0.000   +    CDS     152107 -    152982   1142  ## COG4208 ABC-type sulfate transport system, permease component
   137    64 Op  4   5/0.310   +    CDS     152972 -    154069   1386  ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component
   138    64 Op  5     .       +    CDS     154125 -    155114    552  ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9
                               -    Term    155142 -    155178    2.4 
   139    65 Op  1     .       -    CDS     155303 -    156037    541  ## COG4884 Uncharacterized protein conserved in bacteria
   140    65 Op  2     .       -    CDS     156070 -    156444    377  ## JW2412 hypothetical protein
                               -    Prom    156535 -    156594    2.5 
                               +    Prom    156407 -    156466    3.1 
   141    66 Tu  1     .       +    CDS     156549 -    157400    853  ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase
                               +    Term    157406 -    157436    3.0 
                               -    Term    157389 -    157429    5.6 
   142    67 Op  1  10/0.034   -    CDS     157443 -    157952    655  ## COG2190 Phosphotransferase system IIA components
   143    67 Op  2  25/0.000   -    CDS     157993 -    159720   1757  ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
   144    67 Op  3   6/0.172   -    CDS     159765 -    160022    377  ## COG1925 Phosphotransferase system, HPr-related proteins
                               -    Prom    160186 -    160245    5.8 
                               -    Term    160350 -    160377    0.1 
   145    68 Tu  1   8/0.069   -    CDS     160406 -    161377    702  ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9
                               -    Prom    161410 -    161469    4.4 
                               -    Term    161490 -    161522    4.1 
   146    69 Tu  1     .       -    CDS     161562 -    162197    609  ## COG2981 Uncharacterized protein involved in cysteine biosynthesis
                               -    Prom    162362 -    162421    3.3 
                               +    Prom    162321 -    162380    2.7 
   147    70 Op  1   7/0.069   +    CDS     162556 -    163539    724  ## COG3115 Cell division protein
                               +    Term    163571 -    163599    1.3 
   148    70 Op  2   3/0.621   +    CDS     163610 -    165625   2065  ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)
   149    70 Op  3     .       +    CDS     165627 -    165845    278  ## COG3530 Uncharacterized protein conserved in bacteria
                               +    Term    165850 -    165892   -0.5 
                               -    Term    165786 -    165831    3.1 
   150    71 Tu  1     .       -    CDS     165842 -    166840    768  ## COG0385 Predicted Na+-dependent transporter
                               -    Prom    166897 -    166956    5.0 
                               +    Prom    166845 -    166904    3.7 
   151    72 Tu  1     .       +    CDS     166930 -    167856    579  ## COG0583 Transcriptional regulator
                               -    Term    167846 -    167893    2.5 
   152    73 Tu  1     .       -    CDS     167895 -    168659    806  ## ECS88_2597 hypothetical protein
                               -    Prom    168874 -    168933    3.9 
                               +    Prom    168643 -    168702    3.8 
   153    74 Op  1   1/0.897   +    CDS     168908 -    169741    937  ## COG0005 Purine nucleoside phosphorylase
   154    74 Op  2     .       +    CDS     169801 -    171057    925  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term    171066 -    171100    4.3 
   155    75 Op  1     .       +    CDS     171110 -    171268    129  ## EcSMS35_2559 hypothetical protein
   156    75 Op  2     .       +    CDS     171309 -    172193    496  ## COG0583 Transcriptional regulator
Predicted protein(s)
>gi|223713596|gb|ACDM01000002.1| GENE     1       656  -       916    287     86 aa, chain - ## HITS:1  COG:yfhL KEGG:ns NR:ns ## COG: yfhL COG1145 # Protein_GI_number: 16130487 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1      86       1      86      86     153  100.0  6e-38
MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI
VKDPAHVETEEQLWDKFVLMHHADKI
>gi|223713596|gb|ACDM01000002.1| GENE     2       972  -      1820    882    282 aa, chain - ## HITS:1  COG:ECs3427 KEGG:ns NR:ns ## COG: ECs3427 COG1737 # Protein_GI_number: 15832681 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     282      25     306     306     525  100.0  1e-149
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY
KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE
KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD
DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
SISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
>gi|223713596|gb|ACDM01000002.1| GENE     3      2029  -      2664    500    211 aa, chain + ## HITS:1  COG:STM2569 KEGG:ns NR:ns ## COG: STM2569 COG0560 # Protein_GI_number: 16765889 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Salmonella typhimurium LT2 # 1     211       1     211     211     365   91.0  1e-101
MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAAR
WPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITG
SPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYS
GYSDSNQDNPLLYFCQHRWRVTPRGELQQLE
>gi|223713596|gb|ACDM01000002.1| GENE     4      2722  -      3225    458    167 aa, chain + ## HITS:1  COG:yfhC KEGG:ns NR:ns ## COG: yfhC COG0590 # Protein_GI_number: 16130484 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Escherichia coli K12 # 1     167      12     178     178     337   99.0  5e-93
MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEI
MALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV
LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD
>gi|223713596|gb|ACDM01000002.1| GENE     5      3222  -      4778   1748    518 aa, chain - ## HITS:1  COG:yfhD KEGG:ns NR:ns ## COG: yfhD COG4623 # Protein_GI_number: 16130483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein # Organism: Escherichia coli K12 # 47     518       1     472     472     913   99.0  0
MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEIN
GKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQ
PGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVD
DKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNT
LSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAE
EIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYL
QDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQ
KPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTE
LGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN
>gi|223713596|gb|ACDM01000002.1| GENE     6      5039  -      8923   4409   1294 aa, chain + ## HITS:1  COG:ECs3423_1 KEGG:ns NR:ns ## COG: ECs3423_1 COG0046 # Protein_GI_number: 15832677 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Escherichia coli O157:H7 # 1     984       2     985     985    1997   99.0  0
MEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLNAPLNDDEHAQLERLLKY
GPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVNRLERGVAYYIEAGTLTN
EQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTSVDLLGQGRQALIDANLRLGLA
LAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGEQQPKSLFKMI
KNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKVETHNHPTA
ISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVT
ALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIR
ADHVQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRC
QEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDEPGMSPLE
IWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLP
LDVLLGKTPKMTRDVQTLKAKGDALAREGITIADAVKRVLHLPTVAEKTFLVTIGDRSVT
GMVARDQMVGPWQVPVANCAVTTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALT
NIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSM
KTRWQEGNEEREMTSPLSLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGAT
ALAQVYRQLGDKPADVRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAG
HCGIDADIATLGDDRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSG
DRFVITANGQTVFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKL
SFDINEDVAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTG
LEDFHALVACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMM
SNLRELIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRV
EVRDAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHP
ERVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG
>gi|223713596|gb|ACDM01000002.1| GENE     7      9526  -     10908    995    460 aa, chain + ## HITS:1  COG:yfhK KEGG:ns NR:ns ## COG: yfhK COG0642 # Protein_GI_number: 16130481 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 15     460      51     496     496     845  100.0  0
MLAFLLILLPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQY
CVLDDPTLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLHNLAQLQCNNSGPDAAA
AARLEAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTR
MIIGPVKNIERMINRLGEGRSLGNSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLR
HLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQ
ADSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSN
AVHYGAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSG
LGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK
>gi|223713596|gb|ACDM01000002.1| GENE     8     11073  -     11786    504    237 aa, chain + ## HITS:1  COG:no KEGG:EcHS_A2708 NR:ns ## KEGG: EcHS_A2708 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1     237       3     239     239     410   99.0  1e-113
MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIPVYQLADYLSTECSDIW
ALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQNTFKQGILLADAKITPYE
RRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDSELDTLRQQ
HHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDTPHESEKPAPSTHEVTPDEP
>gi|223713596|gb|ACDM01000002.1| GENE     9     11776  -     13110   1283    444 aa, chain + ## HITS:1  COG:ECs3420 KEGG:ns NR:ns ## COG: ECs3420 COG2204 # Protein_GI_number: 15832674 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli O157:H7 # 1     444       1     444     444     837  100.0  0
MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD
EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA
LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA
SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM
PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV
SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI
EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM
AGRNRTEFYKLLSRHELDANDFKE
>gi|223713596|gb|ACDM01000002.1| GENE    10     13171  -     13509    503    112 aa, chain + ## HITS:1  COG:ECs3419 KEGG:ns NR:ns ## COG: ECs3419 COG0347 # Protein_GI_number: 15832673 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Escherichia coli O157:H7 # 1     112       1     112     112     191  100.0  4e-49
MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK
IEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI
>gi|223713596|gb|ACDM01000002.1| GENE    11     13554  -     14744   1303    396 aa, chain - ## HITS:1  COG:hmp_2 KEGG:ns NR:ns ## COG: hmp_2 COG1018 # Protein_GI_number: 16130477 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 150     396       1     247     247     517  100.0  1e-146
MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNA
IAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFSPGQEVLDAW
GKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAV
AEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKREEGGQVSNWLHNHANVG
DVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGD
VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFY
LCGPVGFMQFTAKQLVDLGVKQENIHYECFGPHKVL
>gi|223713596|gb|ACDM01000002.1| GENE    12     15072  -     16325   1576    417 aa, chain + ## HITS:1  COG:glyA KEGG:ns NR:ns ## COG: glyA COG0112 # Protein_GI_number: 16130476 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Escherichia coli K12 # 1     417       1     417     417     811  100.0  0
MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN
LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV
VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL
AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE
VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS
GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA
>gi|223713596|gb|ACDM01000002.1| GENE    13     16523  -     17716   1116    397 aa, chain - ## HITS:1  COG:yphH KEGG:ns NR:ns ## COG: yphH COG1940 # Protein_GI_number: 16130475 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1     397       3     399     399     818  100.0  0
MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI
DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA
LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL
GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH
TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS
GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR
DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI
>gi|223713596|gb|ACDM01000002.1| GENE    14     17834  -     21115   3042   1093 aa, chain + ## HITS:1  COG:no KEGG:JW5405 NR:ns ## KEGG: JW5405 # Name: yphG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1    1093       1    1093    1093    2224   99.0  0
MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQA
VWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWP
QHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNG
NATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVD
ISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAW
DKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIK
LQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLT
IELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSP
FDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHSLNKNPQCGQASLI
RASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACP
TNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLC
QGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDV
FPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADG
WRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENN
LEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQ
HLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRL
AATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEAD
FFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAAL
FTTVMPFIFNRVH
>gi|223713596|gb|ACDM01000002.1| GENE    15     21212  -     22195   1095    327 aa, chain + ## HITS:1  COG:yphF KEGG:ns NR:ns ## COG: yphF COG1879 # Protein_GI_number: 16130473 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     327       1     327     327     605  100.0  1e-173
MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV
QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT
CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK
GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR
NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK
VIQVPIDLYTKTEDGKQWLATHVDGLP
>gi|223713596|gb|ACDM01000002.1| GENE    16     22218  -     23729    176    503 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 262     480       7     219     318 72  25 1e-11
MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSE
RPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNGM
IDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSL
ASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTHH
IVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAG
RSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGIIPWLGVDEN
TVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAASSETPIGTLSGGNQQKVVIGRWVY
AASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLVCDRILLLQHG
TFSQEFHAPVNVDELMSAILSVH
>gi|223713596|gb|ACDM01000002.1| GENE    17     23754  -     24752   1171    332 aa, chain + ## HITS:1  COG:ECs3412 KEGG:ns NR:ns ## COG: ECs3412 COG1172 # Protein_GI_number: 15832666 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     332       1     332     332     492   99.0  1e-139
MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDA
ATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGT
LAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSAL
IMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL
LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGI
NSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
>gi|223713596|gb|ACDM01000002.1| GENE    18     24827  -     25879   1062    350 aa, chain + ## HITS:1  COG:yphC KEGG:ns NR:ns ## COG: yphC COG1063 # Protein_GI_number: 16130470 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     350      15     364     364     724  100.0  0
MLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLY
QGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYG
WQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGL
GPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGG
ADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLF
HMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD
>gi|223713596|gb|ACDM01000002.1| GENE    19     25891  -     26763    760    290 aa, chain + ## HITS:1  COG:yphB KEGG:ns NR:ns ## COG: yphB COG2017 # Protein_GI_number: 16130469 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1     290       1     290     290     596  100.0  1e-170
MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCFPLVPFANRVSGN
RFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLCLVYEHRSGVYHYRVSQAF
HLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCE
QLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPA
FDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEWL
>gi|223713596|gb|ACDM01000002.1| GENE    20     26811  -     27233    460    140 aa, chain - ## HITS:1  COG:yphA KEGG:ns NR:ns ## COG: yphA COG2259 # Protein_GI_number: 16130468 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     140      25     164     164     236  100.0  7e-63
MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAII
AVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSI
AGAFLLLAITGPGAISLDRR
>gi|223713596|gb|ACDM01000002.1| GENE    21     27330  -     28532   1059    400 aa, chain - ## HITS:1  COG:ECs3408 KEGG:ns NR:ns ## COG: ECs3408 COG0446 # Protein_GI_number: 15832662 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1     400       1     400     400     746   97.0  0
MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ
QVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDA
LGERCFTLRHAGDAARLREVLQPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVM
GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS
ANEQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQ
IAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVL
IGAVTLNQGREIRPIRKWIQSGKTFDAKLLIDENIALKSL
>gi|223713596|gb|ACDM01000002.1| GENE    22     28542  -     29354    808    270 aa, chain - ## HITS:1  COG:hcaB KEGG:ns NR:ns ## COG: hcaB COG1028 # Protein_GI_number: 16130466 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     270       1     270     270     510  100.0  1e-144
MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGN
VTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPAETLETGFHELFNVNVLGY
LLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAPKVRV
NGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAILPLQFFPQPADFTGPYVMLTSRR
NNRALSGVMINADAGLAIRGIRHVAAGLDL
>gi|223713596|gb|ACDM01000002.1| GENE    23     29351  -     29671    148    106 aa, chain - ## HITS:1  COG:ECs3406 KEGG:ns NR:ns ## COG: ECs3406 COG2146 # Protein_GI_number: 15832660 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1     106       1     106     106     209  100.0  1e-54
MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGYLEDDATV
ECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLPEAQP
>gi|223713596|gb|ACDM01000002.1| GENE    24     29671  -     30189    351    172 aa, chain - ## HITS:1  COG:hcaA2 KEGG:ns NR:ns ## COG: hcaA2 COG5517 # Protein_GI_number: 16130464 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Small subunit of phenylpropionate dioxygenase # Organism: Escherichia coli K12 # 1     172       1     172     172     320  100.0  1e-87
MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTMRTTVNAQTRDRRKGVQ
PPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNCQISETDIPNVFAVRVNYL
LYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQAVITSHNLSVLF
>gi|223713596|gb|ACDM01000002.1| GENE    25     30186  -     31547   1289    453 aa, chain - ## HITS:1  COG:ECs3404 KEGG:ns NR:ns ## COG: ECs3404 COG4638 # Protein_GI_number: 15832658 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1     453       1     453     453     952  100.0  0
MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFN
TYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELID
VPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSAPGLRDYLGDIAWYLDGMLDR
REGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSHASAVQVLGAKDDGSDKRLGDGQ
TARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWVDGAVSSYYRETYAEAEQRLGEVRA
LRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVEVWAFCITDKAASDEVKAAFENSATRA
FGPAGFLEQDDSENWCEIQKLLKGHRARNSKLCLEMGLGQEKRRDDGIPGITNYIFSETA
ARGMYQRWADLLSSESWQEVLDKTAAYQQEVMK
>gi|223713596|gb|ACDM01000002.1| GENE    26     31683  -     32573    759    296 aa, chain + ## HITS:1  COG:hcaR KEGG:ns NR:ns ## COG: hcaR COG0583 # Protein_GI_number: 16130462 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     296       1     296     296     568  100.0  1e-162
MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAA
GECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLRQPDTL
IELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKEI
TAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTL
IPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA
>gi|223713596|gb|ACDM01000002.1| GENE    27     32733  -     33872    951    379 aa, chain + ## HITS:1  COG:hcaT KEGG:ns NR:ns ## COG: hcaT COG0477 # Protein_GI_number: 16130461 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     379       1     379     379     636  100.0  0
MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLLLGAGLVARFLGSLLIA
PRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIGFNLFFSPLVPLTDALANT
WQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVILALLTLGVASMLLGFLIRPTI
QPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVG
YLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVVRWGIMGATTALPWLIVVQILH
CGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWV
MALVALPAMFLRPKVVPSC
>gi|223713596|gb|ACDM01000002.1| GENE    28     33864  -     35048    824    394 aa, chain - ## HITS:1  COG:ECs3401 KEGG:ns NR:ns ## COG: ECs3401 COG3711 # Protein_GI_number: 15832655 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1     394      40     433     433     756  100.0  0
MATFSELNGVDDDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLR
RGFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFL
CLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMA
LLFSMLRVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALN
RSLFAIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQ
ENDLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA
>gi|223713596|gb|ACDM01000002.1| GENE    29     35335  -     36189    772    284 aa, chain - ## HITS:1  COG:yfhR KEGG:ns NR:ns ## COG: yfhR COG1073 # Protein_GI_number: 16130459 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1     284      10     293     293     587  100.0  1e-168
MALPVNKRVPKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGPDPWSAESVEFTAKDGT
RLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLPERNFNVFMFDYRGFGKSK
GTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGANILDVIGRGDREGIRAVILD
STFASYATIANQMIPGSGYLLDESYSGENYIASVSPIPLLLIHGKADHVIPWQHSEKLYS
LAKEPKRLILIPDGEHIDAFSDRHGDVYREQMVDFILSALNPQN
>gi|223713596|gb|ACDM01000002.1| GENE    30     36334  -     37137   1033    267 aa, chain - ## HITS:1  COG:ECs3399 KEGG:ns NR:ns ## COG: ECs3399 COG0483 # Protein_GI_number: 15832653 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Escherichia coli O157:H7 # 1     267       1     267     267     530  100.0  1e-150
MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYP
QHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPM
RNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECA
DFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYMLTG
NIVAGNPRVVKAMLANMRDELSDALKR
>gi|223713596|gb|ACDM01000002.1| GENE    31     37256  -     37996   1028    246 aa, chain + ## HITS:1  COG:yfhQ KEGG:ns NR:ns ## COG: yfhQ COG0565 # Protein_GI_number: 16130457 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Escherichia coli K12 # 1     246       1     246     246     483  100.0  1e-136
MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNA
HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGL
TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV
DDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQN
KGNKAE
>gi|223713596|gb|ACDM01000002.1| GENE    32     38448  -     38936    524    162 aa, chain + ## HITS:1  COG:ECs3397 KEGG:ns NR:ns ## COG: ECs3397 COG1959 # Protein_GI_number: 15832651 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     162       1     162     162     278  100.0  4e-75
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG
PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGF
LNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKLRA
>gi|223713596|gb|ACDM01000002.1| GENE    33     39048  -     40262   1706    404 aa, chain + ## HITS:1  COG:ECs3396 KEGG:ns NR:ns ## COG: ECs3396 COG1104 # Protein_GI_number: 15832650 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Escherichia coli O157:H7 # 1     404       9     412     412     820  100.0  0
MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD
LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE
VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD
ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR
SGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI
LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF
TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH
>gi|223713596|gb|ACDM01000002.1| GENE    34     40290  -     40676    588    128 aa, chain + ## HITS:1  COG:ECs3395 KEGG:ns NR:ns ## COG: ECs3395 COG0822 # Protein_GI_number: 15832649 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Escherichia coli O157:H7 # 1     128       1     128     128     237  100.0  4e-63
MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT
YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD
YKSKREAK
>gi|223713596|gb|ACDM01000002.1| GENE    35     40693  -     41016    461    107 aa, chain + ## HITS:1  COG:ECs3394 KEGG:ns NR:ns ## COG: ECs3394 COG0316 # Protein_GI_number: 15832648 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     107       1     107     107     207  100.0  3e-54
MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV
KVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV
>gi|223713596|gb|ACDM01000002.1| GENE    36     41112  -     41627    605    171 aa, chain + ## HITS:1  COG:ECs3393 KEGG:ns NR:ns ## COG: ECs3393 COG1076 # Protein_GI_number: 15832647 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Escherichia coli O157:H7 # 1     171       1     171     171     271  100.0  5e-73
MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT
LRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKR
VKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSSAEQLEEKLLDF
>gi|223713596|gb|ACDM01000002.1| GENE    37     41644  -     43494   2376    616 aa, chain + ## HITS:1  COG:ECs3392 KEGG:ns NR:ns ## COG: ECs3392 COG0443 # Protein_GI_number: 15832646 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli O157:H7 # 1     616       1     616     616    1090  100.0  0
MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQ
QQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETA
AGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVL
RLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDD
FDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISREQF
NELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSI
DPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARA
QDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGL
LSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL
ESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRM
DQSVRRALKGHSVDEV
>gi|223713596|gb|ACDM01000002.1| GENE    38     43496  -     43831    385    111 aa, chain + ## HITS:1  COG:ECs3391 KEGG:ns NR:ns ## COG: ECs3391 COG0633 # Protein_GI_number: 15832645 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli O157:H7 # 1     111       1     111     111     207  100.0  3e-54
MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFD
SLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAREH
>gi|223713596|gb|ACDM01000002.1| GENE    39     43843  -     44043    376     66 aa, chain + ## HITS:1  COG:ECs3390 KEGG:ns NR:ns ## COG: ECs3390 COG2975 # Protein_GI_number: 15832644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      66       1      66      66     114  100.0  5e-26
MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLV
WLDEAE
>gi|223713596|gb|ACDM01000002.1| GENE    40     44221  -     45504   1499    427 aa, chain + ## HITS:1  COG:pepB KEGG:ns NR:ns ## COG: pepB COG0260 # Protein_GI_number: 16130448 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Escherichia coli K12 # 1     427      30     456     456     855  100.0  0
MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQ
LSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEE
LGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNP
TGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKR
VKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMII
DAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFA
ELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRT
IANLLTA
>gi|223713596|gb|ACDM01000002.1| GENE    41     45646  -     46422    701    258 aa, chain + ## HITS:1  COG:no KEGG:SFV_2570 NR:ns ## KEGG: SFV_2570 # Name: sseB # Def: enhanced serine sensitivity protein SseB # Organism: S.flexneri_8401 # Pathway: not_defined # 1     258       4     261     261     484  100.0  1e-135
MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGEAVVEDSALDLQHWEKE
DGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETLFLNAKLPTGKEFMPREIS
LLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVKRAFICSIKENE
EAQPNLLIGIEADGDIEEIIQATGSVATDTLPGDEPIDICQVKKGEKGISHFITEHIAPF
YERRWGGFLRDFKQNRII
>gi|223713596|gb|ACDM01000002.1| GENE    42     47239  -     48084    841    281 aa, chain - ## HITS:1  COG:sseA KEGG:ns NR:ns ## COG: sseA COG2897 # Protein_GI_number: 16130446 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1     281      54     334     334     569  100.0  1e-162
MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSD
HTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILG
GGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARF
NAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGS
GVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEPVK
>gi|223713596|gb|ACDM01000002.1| GENE    43     48291  -     49388    870    365 aa, chain + ## HITS:1  COG:yfhM KEGG:ns NR:ns ## COG: yfhM COG2373 # Protein_GI_number: 16130445 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli K12 # 1     350       1     350    1653     671  100.0  0
MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSENASSAKLSVPERQKLAQ
QSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIHVVDKKSGKVDGAWELSDN
LKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTITTRDIQPSVGFASRGSLLPGK
VVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRNSLANWQSDKLLQMADLVYTGRF
DLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAGRYDYSNPATLFTLSDIGVSAHRYH
NRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQATSDAQGHVQLENDKNAHYCWRVKTVR
QRYSI
>gi|223713596|gb|ACDM01000002.1| GENE    44     49349  -     53251   3589   1300 aa, chain + ## HITS:1  COG:yfhM KEGG:ns NR:ns ## COG: yfhM COG2373 # Protein_GI_number: 16130445 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli K12 # 1    1300     354    1653    1653    2570   99.0  0
MARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDAD
GKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYHFTWPLDSNAATGMWHIRANTGDNQYR
MWDFHVEDFMPERMALNLTGEKTPLTPKDEVKFSVVGYYLYGAPANGNTLQGQLFLRPLR
EAVSALPGFEFGDIAAENLSRTLDEVQLTLDDKGRGEVSTESQWKETHSPLQVIFQGSLL
ESGGRPVTRRAEQAIWPADALPGIRPQFASKSVYDYRTDSTVKQPIVDEGSNAAFDIVYS
DAQGVKKAVSGLQVRLIRERRDYYWNWSEDEGWQSQFDQKDLIENEQTLDLKADETGKVS
FPVEWGAYRLEVKAPNEAVSSVRFWAGYSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTI
KLHIAAPTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPVDKTWNRHDLYLSTLVVRPG
DKSRSATPKRAVGVLHLPLGDENRRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVN
VLVSAVDSGVLNITDYVTPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDE
LKRGGKPPVNHVNIVVQQALPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNES
KVIVAAPVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAV
ELAPGVRTTLFIPVRALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVN
YGTALQPGETWAIPADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTAS
GLFPSLYTNAAQLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWL
TAYVMDFLVRAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAA
LVLARQQKAPLGALREIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNS
DERIWLGDYSSSLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFL
AARTIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGY
PQSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLPA
GLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPVTLV
YLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP
>gi|223713596|gb|ACDM01000002.1| GENE    45     53252  -     55564   1150    770 aa, chain + ## HITS:1  COG:pbpC KEGG:ns NR:ns ## COG: pbpC COG4953 # Protein_GI_number: 16130444 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein PbpC # Organism: Escherichia coli K12 # 1     770       1     770     770    1486  100.0  0
MPRLLTKRGCWITLAAAPFLLFLAAWGADKLWPLPLHEVNPARVVVAQDGTPLWRFADAD
GIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLT
MQVARLLDPHPKTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAY
LGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAARNKVLERMAVQGVWSREQVKES
REEPIWLAPRQMPQLAPLFSRMMLGKSKSDKITTTLDAGLQRRLEELAQNWKGRLPPRSS
LAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALDEGLIHP
ASLLQDVPRRTGDYRPGNFDSGFHGPISMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNV
GLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARHGKAGKLRLQPDDPLLERPLMSS
GAAWIIRRIMADEAQPLPDSALPRVAPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPD
GTPVVGQFGFASAVPLLNQVNNILLSRSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNC
RRRLATWLLDGSQPPTLLLPEQEGINGIRFPIWLDENGKRVAADCPQARQEMINVWPLPL
EPWLPASERRAVRLPPASTSCPPYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSG
GAGERWWFLNGEPLTERGRNVTLHLTDKGDYQLLVMDDVGQIATVKFVMQ
>gi|223713596|gb|ACDM01000002.1| GENE    46     55713  -     56144    510    143 aa, chain + ## HITS:1  COG:ECs3380 KEGG:ns NR:ns ## COG: ECs3380 COG0105 # Protein_GI_number: 15832634 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Escherichia coli O157:H7 # 1     143       1     143     143     277  100.0  4e-75
MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFF
DGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSD
SVESAAREIAYFFGEGEVCPRTR
>gi|223713596|gb|ACDM01000002.1| GENE    47     56294  -     57448   1374    384 aa, chain + ## HITS:1  COG:yfgB KEGG:ns NR:ns ## COG: yfgB COG0820 # Protein_GI_number: 16130442 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Escherichia coli K12 # 1     384       1     384     384     790  100.0  0
MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM
TDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVS
SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE
PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDE
IRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLK
DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAG
DVIDRTKRTLRKRMQGEAIDIKAV
>gi|223713596|gb|ACDM01000002.1| GENE    48     57733  -     58746    596    337 aa, chain + ## HITS:1  COG:ECs3378 KEGG:ns NR:ns ## COG: ECs3378 COG1426 # Protein_GI_number: 15832632 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     337       1     337     337     545   99.0  1e-155
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV
LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTP
PASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGA
PAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
>gi|223713596|gb|ACDM01000002.1| GENE    49     58773  -     59891   1209    372 aa, chain + ## HITS:1  COG:ECs3377 KEGG:ns NR:ns ## COG: ECs3377 COG0821 # Protein_GI_number: 15832631 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Escherichia coli O157:H7 # 1     372       1     372     372     711  100.0  0
MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVR
VSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRM
VVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSV
KASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRVSL
AADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDV
SIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGVRKDRLDNNDMIDQLEARIRAKASQLD
EARRIDVQQVEK
>gi|223713596|gb|ACDM01000002.1| GENE    50     60002  -     61276   1488    424 aa, chain + ## HITS:1  COG:ECs3376 KEGG:ns NR:ns ## COG: ECs3376 COG0124 # Protein_GI_number: 15832630 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1     424       1     424     424     860  100.0  0
MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVT
DVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG
RYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDA
LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGL
CKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRAT
PAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKL
MTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR
TLLG
>gi|223713596|gb|ACDM01000002.1| GENE    51     61294  -     61914    672    206 aa, chain + ## HITS:1  COG:ECs3375 KEGG:ns NR:ns ## COG: ECs3375 COG2976 # Protein_GI_number: 15832629 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     206       1     206     206     344   99.0  5e-95
MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNSHQVDSARSASLAYQNA
VTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKNELEKAAAQLQQGLADTSD
ENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIVADLRGEALLSKGDKQGARSA
WEAGVKSDVTPALSEMMQMKINNLSI
>gi|223713596|gb|ACDM01000002.1| GENE    52     61925  -     63103   1179    392 aa, chain + ## HITS:1  COG:ECs3374 KEGG:ns NR:ns ## COG: ECs3374 COG1520 # Protein_GI_number: 15832628 # Func_class: S Function unknown # Function: FOG: WD40-like repeat # Organism: Escherichia coli O157:H7 # 13     392      13     392     392     719   99.0  0
MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFY
SNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG
HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGA
VKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE
IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVD
QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ
KVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
>gi|223713596|gb|ACDM01000002.1| GENE    53     63221  -     64693   2033    490 aa, chain + ## HITS:1  COG:ECs3373 KEGG:ns NR:ns ## COG: ECs3373 COG1160 # Protein_GI_number: 15832627 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Escherichia coli O157:H7 # 1     490      14     503     503     953  100.0  0
MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI
DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKT
DGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWA
QFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS
IYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISD
QDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSG
VGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV
VIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRK
RLMKHIKKNK
>gi|223713596|gb|ACDM01000002.1| GENE    54     64763  -     64978    143     71 aa, chain + ## HITS:1  COG:no KEGG:S2728 NR:ns ## KEGG: S2728 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      71      13      83      83     126   97.0  2e-28
MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL
ISKKRVEFVLA
>gi|223713596|gb|ACDM01000002.1| GENE    55     64975  -     66345   1109    456 aa, chain - ## HITS:1  COG:xseA KEGG:ns NR:ns ## COG: xseA COG1570 # Protein_GI_number: 16130434 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Escherichia coli K12 # 1     456       1     456     456     818  100.0  0
MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC
AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQQKYEQLKAK
LQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPAAVQGDD
APGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFNDERVARAIFTSRIPVVSAVGHET
DVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQSTRQRLEMAMDYYLANRTRRFTQIH
HRLQQQHPQLRLARQQTMLERLQKRMSFALENQLKRTGQQQQRLTQRLNQQNPQPKIHRA
QTRIQQLEYRLAETLRAQLSATRERFGNAVTHLEAVSPLSTLARGYSVTTATDGNVLKKV
KQVKAGEMLTTRLEDGWIESEVKNIQPVKKSRKKVH
>gi|223713596|gb|ACDM01000002.1| GENE    56     66507  -     67973   1814    488 aa, chain + ## HITS:1  COG:YPO2871_3 KEGG:ns NR:ns ## COG: YPO2871_3 COG0516 # Protein_GI_number: 16123063 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Yersinia pestis # 207     486       1     280     281     478   94.0  1e-134
MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIA
LAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAG
YPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRV
EKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRLRVGAAVGAGAGNEERVDALVAA
GVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIG
PGSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMV
GSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGR
VAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRISGAGIQESHVHDVTITKE
SPNYRLGS
>gi|223713596|gb|ACDM01000002.1| GENE    57     68042  -     69619   1954    525 aa, chain + ## HITS:1  COG:ZguaA_2 KEGG:ns NR:ns ## COG: ZguaA_2 COG0519 # Protein_GI_number: 15803031 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Escherichia coli O157:H7 EDL933 # 207     525       1     319     319     658   99.0  0
MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGP
ESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSA
LVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQF
HPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGDDKVILGLSGGVDS
SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAG
ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN
VGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEY
CDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDF
MTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE
>gi|223713596|gb|ACDM01000002.1| GENE    58     69712  -     70251    637    179 aa, chain - ## HITS:1  COG:no KEGG:ECP_2508 NR:ns ## KEGG: ECP_2508 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1     179       1     179     179     176   99.0  3e-43
MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNREIQQEKQ
RRANAQAAANKRAATAAANKKARQDKLDAEASADKKRDQSYEDELRSLEIQKQKLALAKE
EARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGRDLMKSVGKAEENKSDSWFN
>gi|223713596|gb|ACDM01000002.1| GENE    59     70267  -     70782    381    171 aa, chain - ## HITS:1  COG:no KEGG:SSON_2587 NR:ns ## KEGG: SSON_2587 # Name: not_defined # Def: putative outer membrane lipoprotein # Organism: S.sonnei # Pathway: not_defined # 1     171       2     172     172     266  100.0  3e-70
MKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVD
NSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVGAAAGSMVNDKTLVE
GVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS
>gi|223713596|gb|ACDM01000002.1| GENE    60     71096  -     71287    131     63 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_2653 NR:ns ## KEGG: EcSMS35_2653 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      63       1      63      63      94  100.0  8e-19
MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESP
VQR
>gi|223713596|gb|ACDM01000002.1| GENE    61     71132  -     71422    109     96 aa, chain + ## HITS:1  COG:no KEGG:EC55989_2789 NR:ns ## KEGG: EC55989_2789 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      96       1      96      96     186  100.0  3e-46
MLSFFFALMVLPGTDGRVDKTAKEEDKADEQYDTGHATVKSVSFSHTGCLTHKRFLEVCP
TLWTVLTLRHNRTKWSILRYVKKRQWIHILMLWKLI
>gi|223713596|gb|ACDM01000002.1| GENE    62     71639  -     73882   1542    747 aa, chain + ## HITS:1  COG:yfgF_3 KEGG:ns NR:ns ## COG: yfgF_3 COG2200 # Protein_GI_number: 16130428 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 476     747       1     272     272     555  100.0  1e-157
MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFF
SWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRL
ISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGV
PLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTI
FSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSS
SYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLR
IPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITA
LDSHLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQR
RGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELIS
PDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVS
QLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKN
VNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGID
YMQGYLIGKPQPLIDTLNEIEPIRESA
>gi|223713596|gb|ACDM01000002.1| GENE    63     73921  -     75462   1463    513 aa, chain - ## HITS:1  COG:ECs3364 KEGG:ns NR:ns ## COG: ECs3364 COG0248 # Protein_GI_number: 15832618 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Escherichia coli O157:H7 # 1     513       1     513     513    1009  100.0  0
MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEE
AMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNE
EARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGG
VINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPE
RLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREG
VLYEMEGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLE
ALLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHRKAIKLDD
LPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNA
LVLLDLEKEQEYWEGVAGWRLKIEEESTPEIAA
>gi|223713596|gb|ACDM01000002.1| GENE    64     75467  -     77533   2012    688 aa, chain - ## HITS:1  COG:ECs3363 KEGG:ns NR:ns ## COG: ECs3363 COG0855 # Protein_GI_number: 15832617 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Escherichia coli O157:H7 # 1     688       1     688     688    1347  100.0  0
MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRR
IIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEMARNQIFLINERQLSVNQQ
NWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVEIIRGDTIRYALLEIPSDKVP
RFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEME
ASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDSIVPGGRYHNFKDF
INFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFDAIRERDVLLYYPYHTFEHVLELLRQA
SFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTE
AGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADARI
TNEVRRVFNFIENPYRPVTFDYLMVSPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNL
VDKGLVDRLYAASSSGVPVNLLVRGMCSLIPNLEGISDNIRAISIVDRYLEHDRVYIFEN
GGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSN
RYVPRGNRRKVRAQLAIYDYIKSLEQPE
>gi|223713596|gb|ACDM01000002.1| GENE    65     77705  -     78343    692    212 aa, chain - ## HITS:1  COG:purN KEGG:ns NR:ns ## COG: purN COG0299 # Protein_GI_number: 16130425 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Escherichia coli K12 # 1     212       1     212     212     431  100.0  1e-121
MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA
FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT
HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV
ISWFADGRLKMHENAAWLDGQRLPPQGYAADE
>gi|223713596|gb|ACDM01000002.1| GENE    66     78343  -     79380   1238    345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 2     345       7     356     356 481  68 1e-135
MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVL
VSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAS
AVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDV
LIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPLADHLLAPTRIYVKSVLELIEKV
DVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNC
GVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVIE
>gi|223713596|gb|ACDM01000002.1| GENE    67     79705  -     80331    855    208 aa, chain + ## HITS:1  COG:ECs3360 KEGG:ns NR:ns ## COG: ECs3360 COG0035 # Protein_GI_number: 15832614 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1     208      10     217     217     394  100.0  1e-110
MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGP
VEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN
IDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYT
ASIDQGLNEHGYIIPGLGDAGDKIFGTK
>gi|223713596|gb|ACDM01000002.1| GENE    68     80417  -     81706   1017    429 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 3     423       2     428     447 396  47 1e-109
MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFI
CKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLF
PPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFL
AIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIA
EHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRV
YSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDY
NKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVLRPEEVVLD
AEDADITDK
>gi|223713596|gb|ACDM01000002.1| GENE    69     81756  -     82502    629    248 aa, chain + ## HITS:1  COG:ECs3358 KEGG:ns NR:ns ## COG: ECs3358 COG0593 # Protein_GI_number: 15832612 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Escherichia coli O157:H7 # 1     248       1     248     248     493  100.0  1e-140
MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGY
IYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIE
CIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL
SDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIP
FVKEILKL
>gi|223713596|gb|ACDM01000002.1| GENE    70     82640  -     82999    546    119 aa, chain - ## HITS:1  COG:yfgD KEGG:ns NR:ns ## COG: yfgD COG1393 # Protein_GI_number: 16130420 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1     119       1     119     119     207  100.0  4e-54
MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKILGMNSAREL
MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVANGKARIGRPPEQVLEIVG
>gi|223713596|gb|ACDM01000002.1| GENE    71     83020  -     84483   1724    487 aa, chain - ## HITS:1  COG:yfgC KEGG:ns NR:ns ## COG: yfgC COG4783 # Protein_GI_number: 16130419 # Func_class: R General function prediction only # Function: Putative Zn-dependent protease, contains TPR repeats # Organism: Escherichia coli K12 # 1     487       1     487     487     872  100.0  0
MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQL
RGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSAL
FRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMA
ALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPP
EILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGMYNSGRNQLTSDLLDEW
AKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKAN
EAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAE
AALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYDARIDQLRQLQER
FKPYTKM
>gi|223713596|gb|ACDM01000002.1| GENE    72     84696  -     85757   1446    353 aa, chain + ## HITS:1  COG:ECs3355 KEGG:ns NR:ns ## COG: ECs3355 COG0628 # Protein_GI_number: 15832609 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1     353       1     353     353     588  100.0  1e-168
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQ
SIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRR
YPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDK
EQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSL
LLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVL
FSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
>gi|223713596|gb|ACDM01000002.1| GENE    73     85795  -     86643    488    282 aa, chain - ## HITS:1  COG:focB KEGG:ns NR:ns ## COG: focB COG2116 # Protein_GI_number: 16130417 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1     282       1     282     282     507  100.0  1e-144
MRNKLSFDLQLSARKAAIAERIAAHKIARSKVSVFLMAMSAGVFMAIGFTFYLSVIADAP
SSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRGVISWRTWLINALLVACGN
LAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWM
SYCGRSLCDKIVAMILPITLFVASGFEHCIANLFVIPFAIAIRHFAPPPFWQLAHSSADN
FPALTVSHFITANLLPVMLGNIIGGAVLVSMCYRAIYLRQEP
>gi|223713596|gb|ACDM01000002.1| GENE    74     86665  -     88677   1540    670 aa, chain - ## HITS:1  COG:hyfR KEGG:ns NR:ns ## COG: hyfR COG3604 # Protein_GI_number: 16130416 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 8     670       1     663     663    1316  100.0  0
MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK
SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF
NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE
IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL
THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL
QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ
VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD
KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN
VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM
NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE
DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ
RLGISVREVL
>gi|223713596|gb|ACDM01000002.1| GENE    75     88707  -     89120    326    137 aa, chain - ## HITS:1  COG:no KEGG:SSON_2571 NR:ns ## KEGG: SSON_2571 # Name: not_defined # Def: putative protein processing element # Organism: S.sonnei # Pathway: not_defined # 1     137      22     158     158     272   99.0  2e-72
MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE
DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL
DEIVQEPAIYLMARKIA
>gi|223713596|gb|ACDM01000002.1| GENE    76     89113  -     89871    489    252 aa, chain - ## HITS:1  COG:hyfI KEGG:ns NR:ns ## COG: hyfI COG3260 # Protein_GI_number: 16130414 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III small subunit # Organism: Escherichia coli K12 # 1     252       1     252     252     519   99.0  1e-147
MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD
AERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHD
LYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLW
PQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDAPTGNRVNTWLRDADDPRLNSIV
QQLFRVLRGLHD
>gi|223713596|gb|ACDM01000002.1| GENE    77     89868  -     90413    385    181 aa, chain - ## HITS:1  COG:hyfH KEGG:ns NR:ns ## COG: hyfH COG1143 # Protein_GI_number: 16130413 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli K12 # 1     181       1     181     181     306  100.0  1e-83
MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACACACPANALTIQTD
DQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRC
ERPFAPQKTIALAAELLAQQQNAPQNREMLWAQASVCPECKQRATLINDDTDVLLVAKEQ
L
>gi|223713596|gb|ACDM01000002.1| GENE    78     90423  -     92090   1818    555 aa, chain - ## HITS:1  COG:ECs3349_2 KEGG:ns NR:ns ## COG: ECs3349_2 COG3261 # Protein_GI_number: 15832603 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III large subunit # Organism: Escherichia coli O157:H7 # 156     555       1     416     416     823   95.0  0
MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTIAVKINLLPDVVQYLYYQHDGWL
PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE
IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD
ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD
RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD
TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE
LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR
VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF
RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK
EIERYGIDRNRSPLK
>gi|223713596|gb|ACDM01000002.1| GENE    79     92080  -     93660   1368    526 aa, chain - ## HITS:1  COG:hyfF KEGG:ns NR:ns ## COG: hyfF COG0651 # Protein_GI_number: 16130411 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1     526       1     526     526     873   99.0  0
MSYSVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGIILLLILALWVVQTAADA
GEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFH
LFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAFGL
FGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPMHA
WLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVAVA
AFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGSGN
VLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLARNHLL
IIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMMLAMGTHIP
QPVIRILAGASTIVLSGTHDLPAQRSTWHDFLPSGTASVSEKHSER
>gi|223713596|gb|ACDM01000002.1| GENE    80     93665  -     94315    623    216 aa, chain - ## HITS:1  COG:ECs3347 KEGG:ns NR:ns ## COG: ECs3347 COG4237 # Protein_GI_number: 15832601 # Func_class: C Energy production and conversion # Function: Hydrogenase 4 membrane component (E) # Organism: Escherichia coli O157:H7 # 1     216       1     216     216     339  100.0  2e-93
MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSIFATLSCLFAAEQLLIW
SASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLAALIVLLCAFVVQPVKLPM
ATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMENGSHLVLALLAWRAPELVEIG
IATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG
>gi|223713596|gb|ACDM01000002.1| GENE    81     94327  -     95766   1257    479 aa, chain - ## HITS:1  COG:hyfD KEGG:ns NR:ns ## COG: hyfD COG1009 # Protein_GI_number: 16130409 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Escherichia coli K12 # 1     479       1     479     479     830  100.0  0
MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLT
LVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLL
VFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSALKALLITHIGSLGLY
LAAATLFLQTGTFALSAMSELHGDARYLVYGGILFAAWGKSAQLPMQAWLPDAMEAPTPI
SAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALVTILYGFLMYLPQQDMKRLL
AWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKSLFFLVAGALSYSCGTRLLP
RLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGFALSVEYWILLPAMILLM
IESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVLIVMSLISSVIAATWLQ
>gi|223713596|gb|ACDM01000002.1| GENE    82     95783  -     96730    910    315 aa, chain - ## HITS:1  COG:hyfC KEGG:ns NR:ns ## COG: hyfC COG0650 # Protein_GI_number: 16130408 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 4 # Organism: Escherichia coli K12 # 1     315       8     322     322     508  100.0  1e-144
MRQTLCDGYLVIFALAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKR
QEVAPTSSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFA
LSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIAGSTHIEMISNTLAMGWNSPL
TTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMAS
LFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIHHVTWLG
FSLAALAWVFWLTGL
>gi|223713596|gb|ACDM01000002.1| GENE    83     96741  -     98759   1582    672 aa, chain - ## HITS:1  COG:hyfB KEGG:ns NR:ns ## COG: hyfB COG0651 # Protein_GI_number: 16130407 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1     672       1     672     672    1102   99.0  0
MDALQLLTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTL
VARFATPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFFMNI
FIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMI
AFLLMGRESGSLDFASFRTLSLSPGLASAVFLLAFFGFGAKAGMMPLHSWLPRAHPAAPS
HASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDI
KRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAG
AIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQSLFSLSRV
EAVALQLAGPIAMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNTMIVAMLL
LAALCVLIALSASWLAPKIMHIAHAFTNTPPATVASGIALVPGTFHTQVTPSLLLLLLLA
MPLLPGLYWLWCRSRRAAFRRTGDAWACGYGWENAMAPSGNGVMQPLRVVFSALFRLRQQ
LDPTLRLNKGLAHVTARAQSTEPFWDERVIRPIVSATQRLAKEIQHLQSGDFRLYCLYVV
AALVVLLIAIAV
>gi|223713596|gb|ACDM01000002.1| GENE    84     98759  -     99376    305    205 aa, chain - ## HITS:1  COG:hyfA KEGG:ns NR:ns ## COG: hyfA COG1142 # Protein_GI_number: 16130406 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1     205      14     218     218     387  100.0  1e-108
MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCL
QVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLK
DGEENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRLITGDSLQRQMK
EKQRLAASWFANGGEDPLSLTQEQR
>gi|223713596|gb|ACDM01000002.1| GENE    85     99629  -    100099    568    156 aa, chain - ## HITS:1  COG:ECs3342 KEGG:ns NR:ns ## COG: ECs3342 COG1225 # Protein_GI_number: 15832596 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     322  100.0  1e-88
MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDEL
KKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIH
RISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA
>gi|223713596|gb|ACDM01000002.1| GENE    86    100099  -    100671    375    190 aa, chain - ## HITS:1  COG:ECs3341 KEGG:ns NR:ns ## COG: ECs3341 COG2716 # Protein_GI_number: 15832595 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system regulatory protein # Organism: Escherichia coli O157:H7 # 1     190      23     212     212     374   99.0  1e-104
MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNA
ITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDVADSPHLIERFTALFDAHH
MNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQAFKALCTELNAQGSINVVNY
SQHDEQDGVK
>gi|223713596|gb|ACDM01000002.1| GENE    87    100817  -    101695    774    292 aa, chain + ## HITS:1  COG:dapA KEGG:ns NR:ns ## COG: dapA COG0329 # Protein_GI_number: 16130403 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli K12 # 1     292       1     292     292     580  100.0  1e-165
MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVV
MMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFK
AIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDD
FVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLH
NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL
>gi|223713596|gb|ACDM01000002.1| GENE    88    101712  -    102746    827    344 aa, chain + ## HITS:1  COG:nlpB KEGG:ns NR:ns ## COG: nlpB COG3317 # Protein_GI_number: 16130402 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1     344       2     345     345     624  100.0  1e-179
MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPV
TSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQV
VSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLN
LEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLP
MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLAS
GDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSK
>gi|223713596|gb|ACDM01000002.1| GENE    89    102657  -    102887     75     76 aa, chain - ## HITS:1  COG:no KEGG:SDY_2665 NR:ns ## KEGG: SDY_2665 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1      76       8      83      83     133  100.0  2e-30
MRRERLIRTTSDKQISCELPLKSRFPADAHVCVSYQKKGPDDSSPVFLLAKRSLEDSYQR
VVLTLSQSMTFRIDEL
>gi|223713596|gb|ACDM01000002.1| GENE    90    102959  -    103672   1163    237 aa, chain + ## HITS:1  COG:ECs3338 KEGG:ns NR:ns ## COG: ECs3338 COG0152 # Protein_GI_number: 15832592 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Escherichia coli O157:H7 # 1     237       1     237     237     464  100.0  1e-131
MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSK
LAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDL
FLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEF
GLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGVQLD
>gi|223713596|gb|ACDM01000002.1| GENE    91    103909  -    104703    868    264 aa, chain + ## HITS:1  COG:ECs3337 KEGG:ns NR:ns ## COG: ECs3337 COG2321 # Protein_GI_number: 15832591 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Escherichia coli O157:H7 # 6     264      29     287     287     508  100.0  1e-144
MGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFT
SVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDL
SFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRME
LQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQ
RYSWFKRGFDSGDPAQCNTFGKSI
>gi|223713596|gb|ACDM01000002.1| GENE    92    104757  -    106733   1341    658 aa, chain + ## HITS:1  COG:ypfI KEGG:ns NR:ns ## COG: ypfI COG1444 # Protein_GI_number: 16130399 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase fused to an acetyltransferase # Organism: Escherichia coli K12 # 1     658      14     671     671    1293  100.0  0
MKREGIRRLLVLSGEEGWCFEHTLKLRDALPGDWLWISPRPDAENHCSPSALQTLLGREF
RHAVFDARHGFDAAAFAALSGTLKAGSWLVLLLPVWEEWENQPDADSLRWSDCPDPIATP
HFVQHLKRVLTADNEAILWRQNQPFSLAHFTPRTDWYPATGAPQPEQQQLLKQLMTMPPG
VAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASD
EQADWLVVDEAAAIPAPLLHQLVSRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFE
LQQPIRWAQGCPLEKMVSEALVFDDENFTHTPQGNIVISAFEQTLWQSDPETPLKVYQLL
SGAHYRTSPLDLRRMMDAPGQHFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPR
GNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTQDLDYLSVS
FGYTGELWRFWQRCGFVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQ
ALAQWNGETLPVDPLNDAVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALR
GRLQKNASDAQLCTTLKLSGRKMLLVRQREEAAQALFALNDVRTERLRDRITQWQLFH
>gi|223713596|gb|ACDM01000002.1| GENE    93    106807  -    107505    795    232 aa, chain + ## HITS:1  COG:ypfH KEGG:ns NR:ns ## COG: ypfH COG0400 # Protein_GI_number: 16130398 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1     232       9     240     240     459  100.0  1e-129
MKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGNWFAPLFPDALVVSVGGAEPSGNP
AGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGANATALIGFSQGAIMVLES
IKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDPVIDLAHAVAAQEALISAGGD
VTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEALSGGKPGDDDVIEMM
>gi|223713596|gb|ACDM01000002.1| GENE    94    107615  -    107815    351     66 aa, chain - ## HITS:1  COG:no KEGG:G2583_2995 NR:ns ## KEGG: G2583_2995 # Name: ypfN # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      66       1      66      66      85  100.0  7e-16
MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK
KDQPKK
>gi|223713596|gb|ACDM01000002.1| GENE    95    107843  -    108970   1173    375 aa, chain - ## HITS:1  COG:dapE KEGG:ns NR:ns ## COG: dapE COG0624 # Protein_GI_number: 16130397 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1     375       1     375     375     778  100.0  0
MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMDFADTQNFWAWRGQGET
LAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPN
HTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLVGEPSSIEVVGDVVKNGRRGS
LTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIEWDQGNEFFPATSMQIANIQAGT
GSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARGKL
VDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQ
LLARMYQRIMEQLVA
>gi|223713596|gb|ACDM01000002.1| GENE    96    108974  -    109330    362    118 aa, chain - ## HITS:1  COG:yffB KEGG:ns NR:ns ## COG: yffB COG1393 # Protein_GI_number: 16130396 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1     118       1     118     118     246  100.0  6e-66
MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNDFINELGWEALLNTRGT
TWRKLDETTRNKITDAASAAALMTEMPAIIKRPLLCVPGKPMLLGFSDSSYQQFFHEV
>gi|223713596|gb|ACDM01000002.1| GENE    97    109569  -    109691     78     40 aa, chain - ## HITS:1  COG:no KEGG:ECP_2483 NR:ns ## KEGG: ECP_2483 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1      40      36      75      75      62   95.0  3e-09
MGILRKQYTVVKLIYSIAAMTTSGGQILCKYYGPAVMICM
>gi|223713596|gb|ACDM01000002.1| GENE    98    109869  -    112982   3301   1037 aa, chain - ## HITS:1  COG:acrD KEGG:ns NR:ns ## COG: acrD COG0841 # Protein_GI_number: 16130395 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1    1037       1    1037    1037    2040   99.0  0
MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT
VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ
AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS
QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL
QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM
ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ
NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM
SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL
SVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRW
IVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTH
EKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEA
RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAASNQLLALAAENPELTRVRHNGLD
DSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRML
PDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD
IMESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVM
LVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEA
TLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVP
LFFVLVRRRFPLKPRPE
>gi|223713596|gb|ACDM01000002.1| GENE    99    113146  -    114846   1259    566 aa, chain - ## HITS:1  COG:narQ KEGG:ns NR:ns ## COG: narQ COG3850 # Protein_GI_number: 16130394 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Escherichia coli K12 # 1     566       1     566     566    1080  100.0  0
MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL
QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW
YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL
NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL
HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP
ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME
ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL
TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN
AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT
FSQPSGGGTLVSISFRSAEGEESQLM
>gi|223713596|gb|ACDM01000002.1| GENE   100    115052  -    117031   1526    659 aa, chain + ## HITS:1  COG:aegA_2 KEGG:ns NR:ns ## COG: aegA_2 COG0493 # Protein_GI_number: 16130393 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 181     659       1     479     479    1000  100.0  0
MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSAVTCHHCE
DAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHK
CDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLRTARQEHQPWHASTAAQEMPV
MSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCGEHSVCEWTC
PLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTI
GNIERYISDQALAKGWRPDLSHVTKVDKRVAIIGAGPAGLACADVLTRNGVGVTVYDRHP
EIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGV
GTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTA
MDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHV
CGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKW
GRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH
>gi|223713596|gb|ACDM01000002.1| GENE   101    117099  -    117674    644    191 aa, chain + ## HITS:1  COG:yffH KEGG:ns NR:ns ## COG: yffH COG0494 # Protein_GI_number: 16130392 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1     191       1     191     191     373  100.0  1e-103
MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTV
VLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYM
SPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL
LNYLQTSHLMD
>gi|223713596|gb|ACDM01000002.1| GENE   102    117923  -    118843    665    306 aa, chain + ## HITS:1  COG:no KEGG:B21_02319 NR:ns ## KEGG: B21_02319 # Name: ypfG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     306      42     347     347     602   99.0  1e-171
MARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGD
KWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGS
ETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPL
RREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNEL
ELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWP
TLWITR
>gi|223713596|gb|ACDM01000002.1| GENE   103    118938  -    120941   2324    667 aa, chain - ## HITS:1  COG:tktB KEGG:ns NR:ns ## COG: tktB COG0021 # Protein_GI_number: 16130390 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Escherichia coli K12 # 1     667       1     667     667    1360  100.0  0
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFI
LSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLA
NAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGF
YDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGE
KAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKAS
QNTLNAYGPMLPELLGGSADLAPSNLTIWKGSVSLKEDPAGNYIHYGVREFGMTAIANGI
AHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGY
VLKDSGGKPDIILIATGSEMEITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVL
PSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHK
VLGVKGA
>gi|223713596|gb|ACDM01000002.1| GENE   104    120961  -    121911   1007    316 aa, chain - ## HITS:1  COG:ECs3326 KEGG:ns NR:ns ## COG: ECs3326 COG0176 # Protein_GI_number: 15832580 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli O157:H7 # 1     316       1     316     316     635  100.0  0
MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLSQYEHLIDDAIAWGKK
NGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSFDKEKSIEKARHLVDLYQQ
QGVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGR
IYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYETIVMGASFRRTEQILALTGCDR
LTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRL
FAVDQRKLEDLLAAKL
>gi|223713596|gb|ACDM01000002.1| GENE   105    122200  -    124479   2653    759 aa, chain + ## HITS:1  COG:maeB_1 KEGG:ns NR:ns ## COG: maeB_1 COG0281 # Protein_GI_number: 16130388 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1     434       1     434     434     849  100.0  0
MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIEKDPLKAYKY
TARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEVDELDPDKFI
EVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRV
VEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVVCDSKGVIYQGREPNMAETKAAY
AVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKKMARAPMILALANPEPEILPPLAKE
VRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVRAIAELAHAEQS
EVVASAYGDQDLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMESGVATRPIADFDVYIDKL
TEFVYKTNLFMKPIFSQARKAPKRVVLPEGEEARVLHATQELVTLGLAKPILIGRPNVIE
MRIQKLGLQIKAGVDFEIVNNESDPRFKEYWTEYFQIMKRRGVTQEQAQRALISNPTVIG
AIMVQRGEADAMICGTVGDYHEHFSVVKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYV
NDEPDAEELAEITLMAAETVRRFGIEPRVALLSHSNFGSSDCPSSSKMRQALELVRERAP
ELMIDGEMHGDAALVEAIRNDRMPDSSLKGSANILVMPNMEAARISYNLLRVSSSEGVTV
GPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTQPL
>gi|223713596|gb|ACDM01000002.1| GENE   106    124771  -    125106    393    111 aa, chain + ## HITS:1  COG:ECs3324 KEGG:ns NR:ns ## COG: ECs3324 COG4810 # Protein_GI_number: 15832578 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli O157:H7 # 1     111      25     135     135     213  100.0  1e-55
MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL
KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS
>gi|223713596|gb|ACDM01000002.1| GENE   107    125119  -    125598    377    159 aa, chain + ## HITS:1  COG:eutP KEGG:ns NR:ns ## COG: eutP COG4917 # Protein_GI_number: 16130386 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1     159       1     159     159     316   99.0  1e-86
MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYFNHPRWYHALIT
TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGF
EEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE
>gi|223713596|gb|ACDM01000002.1| GENE   108    125573  -    126274    748    233 aa, chain + ## HITS:1  COG:eutQ KEGG:ns NR:ns ## COG: eutQ COG4766 # Protein_GI_number: 16130385 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1     233       1     233     233     456  100.0  1e-128
MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFTITECDESIPVTASVPA
SVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQSLEQGAMQPSFKSVTGKG
GIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAGFMQWENAFFPWTLNYDEIDM
VLEGELHVRHEGQTMIAKAGDVMFIPKGSSIEFGTTSSVKFLYVAWPANWQSL
>gi|223713596|gb|ACDM01000002.1| GENE   109    126271  -    127074    868    267 aa, chain + ## HITS:1  COG:eutT KEGG:ns NR:ns ## COG: eutT COG4812 # Protein_GI_number: 16130384 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization cobalamin adenosyltransferase # Organism: Escherichia coli K12 # 1     267       1     267     267     508  100.0  1e-144
MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLRIKFIDEQGRLFVDDEQ
QQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKMVAKSDPRLGFRAVLDSTI
ALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGCQAIVGLSDEDLHRLSHQPLR
YLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSFEVLRPDILQALNRLSST
VYVMMILSVTKQPLTVKQIQQRLGETQ
>gi|223713596|gb|ACDM01000002.1| GENE   110    127071  -    128087    842    338 aa, chain + ## HITS:1  COG:eutI KEGG:ns NR:ns ## COG: eutI COG0280 # Protein_GI_number: 16130383 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Escherichia coli K12 # 1     338       1     338     338     624  100.0  1e-179
MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALSHGV
AMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCI
AGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPALGFADCSVVPQPTAAQLAD
IALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQF
DAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPM
HDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQTLVE
>gi|223713596|gb|ACDM01000002.1| GENE   111    128126  -    128419    481     97 aa, chain + ## HITS:1  COG:ECs3319 KEGG:ns NR:ns ## COG: ECs3319 COG4577 # Protein_GI_number: 15832573 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli O157:H7 # 1      97      15     111     111     153  100.0  9e-38
MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGA
AAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL
>gi|223713596|gb|ACDM01000002.1| GENE   112    128526  -    128813    239     95 aa, chain + ## HITS:1  COG:cchB KEGG:ns NR:ns ## COG: cchB COG4576 # Protein_GI_number: 16130381 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli K12 # 1      95       1      95      95     176  100.0  9e-45
MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVSG
SSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK
>gi|223713596|gb|ACDM01000002.1| GENE   113    128825  -    130228    837    467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 1     454       1     461     477 327  40 3e-88
MNQQDIEQVVKAVLLKMQSSDTPSAAVHEMGVFASLDDAVAAAKVAQQGLKSVAMRQLAI
AAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTPGVECLSPQVLTGDNGLTL
IENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAPHPAAKKVSQRAITLLNQAIV
AAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGEAVVEAARKHTNKRLIAAGAGNP
PVVVDETADLARAAQSIVKGASFDNNIICADEKVLIVVDSVADELMRLMEGQHAVKLTAE
QAQQLQPVLLKNIDERGKGTVSRDWVGRDAGKIAAAIGLKVPQETRLLFVETTAEHPFAV
TELMMPVLPVVRVANVADAIALAVKLEGGCHHTAAMHSRNIENMNQMANAIDTSIFVKNG
PCIAGLGLGGEGWTTMTITTPTGEGVTSARTFVRLRRCVLVDAFRIV
>gi|223713596|gb|ACDM01000002.1| GENE   114    130239  -    131075    934    278 aa, chain + ## HITS:1  COG:eutJ KEGG:ns NR:ns ## COG: eutJ COG4820 # Protein_GI_number: 16130379 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin # Organism: Escherichia coli K12 # 1     278       1     278     278     564  100.0  1e-161
MAHDEQWLTPRLQTAATLCNQTPAATESPLWLGVDLGTCDVVSMVVDRDGQPVAVCLDWA
DVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRFSHAATSFPPGTDPRISINVLESAGLEV
SHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKKGKVTYSADEATGGHHISLTLAGNR
RISLEEAEQYKRGHGEEIWPAVKPVYEKMADIVARHIEGQGITDLWLAGGSCMQPGVAEL
FRKQFPALQVHLPQHSLFMTPLAIASSGREKAEGLYAK
>gi|223713596|gb|ACDM01000002.1| GENE   115    131065  -    132252   1201    395 aa, chain + ## HITS:1  COG:eutG KEGG:ns NR:ns ## COG: eutG COG1454 # Protein_GI_number: 16130378 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli K12 # 1     395      10     404     404     727  100.0  0
MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQAQTRGLKHLFVMADSFL
HQAGMTAGLTRSLTVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLD
AAKAVTLLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQV
LAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSALNATPFTDSLAIGAIAM
IGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGLANA
MLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRDAINAVSELIAEVGIGKRLGDVGATSA
HYGAWAQAALEDICLRSNPRTASLEQIVGLYAAAQ
>gi|223713596|gb|ACDM01000002.1| GENE   116    132469  -    133695   1637    408 aa, chain + ## HITS:1  COG:eutH KEGG:ns NR:ns ## COG: eutH COG3192 # Protein_GI_number: 16130377 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1     408       1     408     408     663  100.0  0
MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGSGGQFEEGFMAMGALGL
AMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACDMGGFFLAKELAGGDVAAW
LYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLAGIVTIPIGCIAGGLVAMYSG
VQINGQPVEFTFALILMNMIPVIIVAILVALGLKFIPEKMINGFQIFAKFLVALITLGLA
AAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEVIGSISCVLLGAYPMVLLLTRWFEK
PLMSVGKVLNMNNIAAAGMVATLANNIPMFGMMKQMDTRGKVINCAFAVSAAFALGDHLG
FAAANMNAMIFPMIVGKLIGGVTAIGVAMMLVPKEDATATKTEAEAQS
>gi|223713596|gb|ACDM01000002.1| GENE   117    133692  -    135095   1454    467 aa, chain + ## HITS:1  COG:eutA KEGG:ns NR:ns ## COG: eutA COG4819 # Protein_GI_number: 16130376 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Escherichia coli K12 # 1     467       1     467     467     895   99.0  0
MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKREISWQSPVFFTPVDKQ
GGLKEAELKTLILEQYHAAGIEPESVDSGAIIITGESAKTRNARPAVMALSQSLGDFVVA
SAGPHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANYALFDAGKISGTACLNVGGRL
LETDSHGRVVYAHKPGQMIVDECFGAGTDARSLTGAQLVQVTRRMAELIVEVIDGTLSPL
AQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADPFCFADIGPLLATALHDHPRLREMN
VQFPAQTVRATVIGAGAHALSLSGSTIWLEGVQLPLRNLPVAIPIDETDLVGAWQQALIQ
LDLDPKTDAYVLALPASLPVRYAAVLTVINALVDFVARFPNPHPLLVVAGQDFGKALGML
LRPQLQQLPLAVIDEVIVRAGDYIDIGTPLFGGSVVPVTVKSLAFPS
>gi|223713596|gb|ACDM01000002.1| GENE   118    135107  -    136468   1625    453 aa, chain + ## HITS:1  COG:eutB KEGG:ns NR:ns ## COG: eutB COG4303 # Protein_GI_number: 16130366 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Escherichia coli K12 # 1     453      15     467     467     924  100.0  0
MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQERVAAKQVLSEMTVADIR
NNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSE
VVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEG
LSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAP
GGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANF
GADQVTMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMG
CDCCYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLN
LRPSPEFERWLESMGIMANGRLTKRAGDPSLFF
>gi|223713596|gb|ACDM01000002.1| GENE   119    136489  -    137376   1022    295 aa, chain + ## HITS:1  COG:eutC KEGG:ns NR:ns ## COG: eutC COG4302 # Protein_GI_number: 16130365 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Escherichia coli K12 # 1     295       1     295     295     555  100.0  1e-158
MDQKQIEEIVRSVMASMGQAAPAPSEAKCATTNCAAPVTSESCALDLGSAEAKAWIGVEN
PHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGL
LEVRSEISDKNLYLTRPDMGRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEE
ILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSC
YAVYSPRMATTVEADRTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR
>gi|223713596|gb|ACDM01000002.1| GENE   120    137386  -    138045    715    219 aa, chain + ## HITS:1  COG:eutL KEGG:ns NR:ns ## COG: eutL COG4816 # Protein_GI_number: 16130364 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1     219       1     219     219     375  100.0  1e-104
MPALDLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAM
VEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQ
DTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATYGIDAALKSADVQLATYVPPP
SETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQRA
>gi|223713596|gb|ACDM01000002.1| GENE   121    138058  -    138558    431    166 aa, chain + ## HITS:1  COG:eutK KEGG:ns NR:ns ## COG: eutK COG4577 # Protein_GI_number: 16130363 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli K12 # 1     166       3     168     168     288  100.0  3e-78
MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAG
CAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPDAPVIVAESADELLALLTS
VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKPH
>gi|223713596|gb|ACDM01000002.1| GENE   122    138604  -    139656    999    350 aa, chain + ## HITS:1  COG:eutR KEGG:ns NR:ns ## COG: eutR COG2207 # Protein_GI_number: 16130362 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     350       1     350     350     713  100.0  0
MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAWQQIYDQLHPG
KFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGSQCLGSAEI
ATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPDRVLHMLRNQSALEVKEQHKA
ALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMGAMLEEAQPMVTAESISHQSYRR
LLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE
LISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREWG
>gi|223713596|gb|ACDM01000002.1| GENE   123    139662  -    140561    685    299 aa, chain - ## HITS:1  COG:hemF KEGG:ns NR:ns ## COG: hemF COG0408 # Protein_GI_number: 16130361 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase # Organism: Escherichia coli K12 # 1     299       1     299     299     625  100.0  1e-179
MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGGRSRVLRNGGVFEQAGV
NFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYVPTSHANVRFFIAEKPGAD
PVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDEYFYLKHRNEQR
GIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRGRY
VEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYQPKDGSPEAALSEFIKVRDWV
>gi|223713596|gb|ACDM01000002.1| GENE   124    140565  -    141434    806    289 aa, chain - ## HITS:1  COG:amiA KEGG:ns NR:ns ## COG: amiA COG0860 # Protein_GI_number: 16130360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli K12 # 1     289       1     289     289     531  100.0  1e-151
MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVV
LDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEI
AHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATD
KDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVL
VETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR
>gi|223713596|gb|ACDM01000002.1| GENE   125    141648  -    142073    579    141 aa, chain + ## HITS:1  COG:ypeA KEGG:ns NR:ns ## COG: ypeA COG0456 # Protein_GI_number: 16130359 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Escherichia coli K12 # 1     141      38     178     178     294  100.0  3e-80
MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGDVVGTVMG
GYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYER
LGYEHADVLSLGKRLIEDEEY
>gi|223713596|gb|ACDM01000002.1| GENE   126    142060  -    142509    302    149 aa, chain + ## HITS:1  COG:no KEGG:G2583_2964 NR:ns ## KEGG: G2583_2964 # Name: yfeZ # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     149       3     151     151     239  100.0  3e-62
MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASREQGTALLNLFYPDHDN
FWLGLIPGIPAVLAFLLSGRRATFPRTWRVLYFLLLLAQVVLLCWQPWLWLNGESVSGIG
LALVVADIVALIWLLTNRRLRACFNEVKE
>gi|223713596|gb|ACDM01000002.1| GENE   127    142570  -    143145    466    191 aa, chain + ## HITS:1  COG:no KEGG:SSON_2521 NR:ns ## KEGG: SSON_2521 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     191       1     191     191     381  100.0  1e-105
MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQGVGELTASTPLQEQAI
ADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGV
KIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLK
NWKVSKIIWRR
>gi|223713596|gb|ACDM01000002.1| GENE   128    143241  -    144140   1074    299 aa, chain + ## HITS:1  COG:yfeX KEGG:ns NR:ns ## COG: yfeX COG2837 # Protein_GI_number: 16130356 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Escherichia coli K12 # 1     299      10     308     308     615   99.0  1e-176
MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATFEAKFPDAHLGAVVAFG
NNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLRHDVNFSVAQAAMEAFGDC
IEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVIKDGVDAGGSYVFVQRWEHNL
KQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTRVDLKEDGKGLKIVRQSLPYGTA
SGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAMLRFTKPVTGGYYFAPSLDKLMAL
>gi|223713596|gb|ACDM01000002.1| GENE   129    144380  -    145684   1295    434 aa, chain - ## HITS:1  COG:yfeW KEGG:ns NR:ns ## COG: yfeW COG1680 # Protein_GI_number: 16130355 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 1     434      30     463     463     879  100.0  0
MKRTMLYLSLLAVSCSVSAAKYPVLTESSPEKAGFNVERLNQMDRWISQQVDVGYPSVNL
LIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEG
KLHPDDRIAKYIPGFADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQD
KGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRYVEESIYRPLGLTHT
VFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGGVSGHAGL
FSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTF
GTLASPQTYGHTGWTGTVTVIDPVNHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATY
GWVVDQVYAALKQK
>gi|223713596|gb|ACDM01000002.1| GENE   130    145689  -    147113   1601    474 aa, chain - ## HITS:1  COG:yfeV_2 KEGG:ns NR:ns ## COG: yfeV_2 COG1263 # Protein_GI_number: 16130354 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 101     474       1     374     374     655  100.0  0
MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTS
DQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATI
FTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYN
AAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACA
RIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGC
AVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPH
SALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGL
NSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD
>gi|223713596|gb|ACDM01000002.1| GENE   131    147117  -    148013    828    298 aa, chain - ## HITS:1  COG:yfeU KEGG:ns NR:ns ## COG: yfeU COG2103 # Protein_GI_number: 16130353 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Escherichia coli K12 # 1     298       1     298     298     547  100.0  1e-156
MQFEKMITEGSNTASAEIDRVSTLEMCRIINDEDKTVPLAVERVLPDIAAAIDVIHAQVS
GGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGGEYAIQHAVEGAEDSREGG
VNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCRTVGISCNPGSAVSTTAEFAI
TPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGKVFGNLMVDVVATNEKLHVRQVN
IVKNATGCSAEQAEAALIACERNCKTAIVMVLKNLDAAEAKKRLDQHGGFIRQVLDKE
>gi|223713596|gb|ACDM01000002.1| GENE   132    148177  -    149034    797    285 aa, chain + ## HITS:1  COG:yfeT KEGG:ns NR:ns ## COG: yfeT COG1737 # Protein_GI_number: 16130352 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     285       1     285     285     478  100.0  1e-135
MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGA
QGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALL
DYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL
KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLTDSPLRRLAHFTLDTVSGETEW
RSSSMSTRTAQNSVTDLLFVGLVQLNDVESLKMIQRSSELTQRLK
>gi|223713596|gb|ACDM01000002.1| GENE   133    149163  -    149954    248    263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7     251       4     238     242 100  30 6e-20
MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVV
ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNV
TKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRV
NAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESS
YLTGTQNVIDGGSTLPETVSVGI
>gi|223713596|gb|ACDM01000002.1| GENE   134    150258  -    151274   1398    338 aa, chain + ## HITS:1  COG:cysP KEGG:ns NR:ns ## COG: cysP COG4150 # Protein_GI_number: 16130350 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     338       1     338     338     652  100.0  0
MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKL
TIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPADWQSRLPNNSSPFYS
TMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKGKT
EQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKT
NILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITDYYYRVNNPEVMDKLKDKF
PQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLAAGRN
>gi|223713596|gb|ACDM01000002.1| GENE   135    151274  -    152107   1007    277 aa, chain + ## HITS:1  COG:cysU KEGG:ns NR:ns ## COG: cysU COG0555 # Protein_GI_number: 16130349 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type sulfate transport system, permease component # Organism: Escherichia coli K12 # 1     277       1     277     277     439  100.0  1e-123
MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAY
KVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS
VNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT
RWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF
DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH
>gi|223713596|gb|ACDM01000002.1| GENE   136    152107  -    152982   1142    291 aa, chain + ## HITS:1  COG:cysWm KEGG:ns NR:ns ## COG: cysWm COG4208 # Protein_GI_number: 16132224 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Escherichia coli K12 # 1     291       1     291     291     538  100.0  1e-153
MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADP
DMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV
YLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA
ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE
LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH
>gi|223713596|gb|ACDM01000002.1| GENE   137    152972  -    154069   1386    365 aa, chain + ## HITS:1  COG:cysA KEGG:ns NR:ns ## COG: cysA COG1118 # Protein_GI_number: 16130348 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Escherichia coli K12 # 1     365       1     365     365     722  100.0  0
MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR
FHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKL
LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR
QLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQVWREPATRFVLEFMGEV
NRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLRPWEVDISRRTSLDSPLPVQVLEAS
PKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGERLFVGLQHARLYNGDERIETRDEELA
LAQSA
>gi|223713596|gb|ACDM01000002.1| GENE   138    154125  -    155114    552    329 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 24     318       1     304     308 217  39 3e-55
MARFVTCRPDKTRKRRIRQHHVWIEIVSTLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGN
NPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDN
MSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTT
GPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT
EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAV
VVAIICDRGDRYLSTGVFGEEHFSQGAGI
>gi|223713596|gb|ACDM01000002.1| GENE   139    155303  -    156037    541    244 aa, chain - ## HITS:1  COG:yfeS_2 KEGG:ns NR:ns ## COG: yfeS_2 COG4884 # Protein_GI_number: 16130346 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 73     244       1     172     172     355  100.0  3e-98
MKKRFIYHDEKSNKFWWIDYEGDSLAVNYGKVGSIGKFQTKEFDNEEQCLKEASKLIAAK
MKKGYQEDPKFNFMDRYYFDDEEIGLHVKTSHPNFQCHFTDPLYMCCWDEESPFGSDEGA
DALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSN
MITYATAFGQIKVMGKISHKLKKMGLNALARHQLTAKILQWGDGQDSPILQKMIDDLTAF
PHEN
>gi|223713596|gb|ACDM01000002.1| GENE   140    156070  -    156444    377    124 aa, chain - ## HITS:1  COG:no KEGG:JW2412 NR:ns ## KEGG: JW2412 # Name: yfeK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     124       1     124     124     244  100.0  9e-64
MKKIICLVITLLMTLPVYAKLTAHEEARINAMLEGLAQKKDLIFVRNGDEHTCYEAVSHL
RLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDENAQPFLHALIAQTDKTVP
AEGN
>gi|223713596|gb|ACDM01000002.1| GENE   141    156549  -    157400    853    283 aa, chain + ## HITS:1  COG:pdxK KEGG:ns NR:ns ## COG: pdxK COG2240 # Protein_GI_number: 16130344 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Escherichia coli K12 # 1     283       1     283     283     556  100.0  1e-158
MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHY
DTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDL
LIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAA
AKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISHSRVKTDLKGTGDLFCAQLI
SGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPPLAEA
>gi|223713596|gb|ACDM01000002.1| GENE   142    157443  -    157952    655    169 aa, chain - ## HITS:1  COG:crr KEGG:ns NR:ns ## COG: crr COG2190 # Protein_GI_number: 16130343 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Escherichia coli K12 # 1     169       1     169     169     285  100.0  4e-77
MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKM
VAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTV
IEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK
>gi|223713596|gb|ACDM01000002.1| GENE   143    157993  -    159720   1757    575 aa, chain - ## HITS:1  COG:ptsI KEGG:ns NR:ns ## COG: ptsI COG1080 # Protein_GI_number: 16130342 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 1     575       1     575     575    1044  100.0  0
MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTK
AGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDD
EYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFI
TDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMR
AVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFL
FMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAI
RIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAF
DESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPS
VLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNT
NFEDAKVLAEQALAQPTTDELMTLVNKFIEEKTIC
>gi|223713596|gb|ACDM01000002.1| GENE   144    159765  -    160022    377     85 aa, chain - ## HITS:1  COG:ECs3287 KEGG:ns NR:ns ## COG: ECs3287 COG1925 # Protein_GI_number: 15832541 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Escherichia coli O157:H7 # 1      85       1      85      85     129  100.0  2e-30
MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTV
VTISAEGEDEQKAVEHLVKLMAELE
>gi|223713596|gb|ACDM01000002.1| GENE   145    160406  -    161377    702    323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4     312       3     304     308 275  49 1e-72
MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK
PGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM
KGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGG
TLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLD
LKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILP
SSGERYLSTALFADLFTEKELQQ
>gi|223713596|gb|ACDM01000002.1| GENE   146    161562  -    162197    609    211 aa, chain - ## HITS:1  COG:ECs3285 KEGG:ns NR:ns ## COG: ECs3285 COG2981 # Protein_GI_number: 15832539 # Func_class: E Amino acid transport and metabolism # Function: Uncharacterized protein involved in cysteine biosynthesis # Organism: Escherichia coli O157:H7 # 1     211      43     253     253     383  100.0  1e-106
MGGAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIPGI
GQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSLFTMI
PLLNLFIMPVAVCGATAMWVDCYRDKHAMWR
>gi|223713596|gb|ACDM01000002.1| GENE   147    162556  -    163539    724    327 aa, chain + ## HITS:1  COG:zipA KEGG:ns NR:ns ## COG: zipA COG3115 # Protein_GI_number: 16130338 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli K12 # 1     327       2     328     328     476  100.0  1e-134
MQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSKRDDDSYDEDVEDDE
GVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPHP
AQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP
APVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPA
LFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVL
DDQRRMMTPQKLREYQDIIREVKDANA
>gi|223713596|gb|ACDM01000002.1| GENE   148    163610  -    165625   2065    671 aa, chain + ## HITS:1  COG:lig KEGG:ns NR:ns ## COG: lig COG0272 # Protein_GI_number: 16130337 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1     671       1     671     671    1317  100.0  0
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGS
>gi|223713596|gb|ACDM01000002.1| GENE   149    165627  -    165845    278     72 aa, chain + ## HITS:1  COG:Z3676 KEGG:ns NR:ns ## COG: Z3676 COG3530 # Protein_GI_number: 15802943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1      72       1      72      72     123  100.0  9e-29
MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAGKLGELMQITLLIKTEG
LTQLVQPLKRPL
>gi|223713596|gb|ACDM01000002.1| GENE   150    165842  -    166840    768    332 aa, chain - ## HITS:1  COG:yfeH KEGG:ns NR:ns ## COG: yfeH COG0385 # Protein_GI_number: 16130336 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Escherichia coli K12 # 1     332       1     332     332     592  100.0  1e-169
MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIA
GGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTS
MAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHL
SRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLL
AIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFH
QIQLMVCAVLARRYKRQTEQLQAQQESSADKA
>gi|223713596|gb|ACDM01000002.1| GENE   151    166930  -    167856    579    308 aa, chain + ## HITS:1  COG:yfeR KEGG:ns NR:ns ## COG: yfeR COG0583 # Protein_GI_number: 16130335 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     308       1     308     308     575  100.0  1e-164
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLT
DAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYP
DIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVE
DYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGR
EGDPLYQI
>gi|223713596|gb|ACDM01000002.1| GENE   152    167895  -    168659    806    254 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2597 NR:ns ## KEGG: ECS88_2597 # Name: yfeN # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     254       1     254     254     442   96.0  1e-123
MKKHLLTLTLSSILAIPVVSHAEFKGGFADIGVHYLDWTSRTTEKSSTKSHKDDFGYLEF
EGGANFSWGEMYGFFDWENFYNGRHNKPGSEQRYTFKNTNRIYLGDTGFNLYLHAYGTYG
SANRVNFHDDMFLYGIGYNFTGSGWWFKPFFAKRYTDQTYYTGDNGYVAGWVAGYNFMLG
SEKFTLTNWNEYEFDRDATYAAGNGGKEGLNGAVALWWNATSHITTGIQYRYADDKLGED
FYQDAIIYSIKFNF
>gi|223713596|gb|ACDM01000002.1| GENE   153    168908  -    169741    937    277 aa, chain + ## HITS:1  COG:xapA KEGG:ns NR:ns ## COG: xapA COG0005 # Protein_GI_number: 16130333 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Escherichia coli K12 # 1     277       1     277     277     563  100.0  1e-160
MSQVQFSHNPLFCIDIIKTYKPDFTPRVAFILGSGLGALADQIENAVAISYEKLPGFPVS
TVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGS
LRPEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEG
FPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNM
AEGLSDVKLSHAQTLAAAELSKQNFINLICGFLRKIA
>gi|223713596|gb|ACDM01000002.1| GENE   154    169801  -    171057    925    418 aa, chain + ## HITS:1  COG:xapB KEGG:ns NR:ns ## COG: xapB COG0477 # Protein_GI_number: 16130332 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     418       1     418     418     706  100.0  0
MSIAMRLKVMSFLQYFIWGSWLVTLGSYMINTLHFTGANVGMVYSSKGIAAIIMPGIMGI
IADKWLRAERAYMLCHLVCAGVLFYAASVTDPDMMFWVMLVNAMAFMPTIALSNSVSYSC
LAQAGLDPVTAFPPIRVFGTVGFIVAMWAVSLLHLELSSLQLYIASGASLLLSAYALTLP
KIPVAEKKATTSLASKLGLDAFVLFKNPRMAIFFLFAMMLGAVLQITNVFGNPFLHDFAR
NPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLKRFGIKTVMLMSMVAWTLRFGFFAY
GDPSTTGFILLLLSMIVYGCAFDFFNISGSVFVEQEVDSSIRASAQGLFMTMVNGVGAWV
GSILSGMAVDYFSVDGVKDWQTIWLVFAGYALFLAVIFFFGFKYNHDPEKIKHRAVTH
>gi|223713596|gb|ACDM01000002.1| GENE   155    171110  -    171268    129     52 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_2559 NR:ns ## KEGG: EcSMS35_2559 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      52       1      52      52      69  100.0  3e-11
MKDILFSSGVGFGIGALFTIVRLPIPVPNVLPGILSIVFMYVGYLVVKYFMP
>gi|223713596|gb|ACDM01000002.1| GENE   156    171309  -    172193    496    294 aa, chain + ## HITS:1  COG:xapR KEGG:ns NR:ns ## COG: xapR COG0583 # Protein_GI_number: 16130331 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     294       1     294     294     564  100.0  1e-161
MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKELENQLGTQLFIRHSRS
VVLTHAGKILMEESRRLLVNANNVLARIEQIGRGEAGRIELGVVGTAMWGRMRPVMRRFL
RENPNVDVLFREKMPAMQMALLERRELDAGIWRMATEPPTGFTSLRLHESAFLVAMPEEH
HLSSFSTVPLEALRDEYFVTMPPVYTDWDFLQRVCQQVGFSPVVIREVNEPQTVLAMVSM
GIGITLIADSYAQMNWPGVIFRPLKQRIPADLYIVYETQQVTPAMVKLLAALTQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:30:53 2011
 Seq name: gi|223713595|gb|ACDM01000003.1| Escherichia sp. 4_1_40B cont1.3, whole genome shotgun sequence 
 Length of sequence - 222620 bp
 Number of predicted genes - 197, with homology - 197
 Number of transcription units - 100, operones - 44 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -   TRNA          5 -        80   94.3  # Val TAC 0 0
                               -   TRNA        127 -       202   94.3  # Val TAC 0 0
                               -   TRNA        247 -       322   94.3  # Val TAC 0 0
                               +    Prom       463 -       522    5.6 
     1     1 Tu  1     .       +    CDS        581 -      1996   1634  ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases
                               +    Term      2011 -      2056    6.3 
                               -    Term      2005 -      2039    3.5 
     2     2 Op  1     .       -    CDS       2048 -      2440    263  ## JW2394 predicted DNA-binding transcriptional regulator
     3     2 Op  2     .       -    CDS       2442 -      2801    347  ## SDY_2596 hypothetical protein
                               -    Prom      2833 -      2892    5.6 
                               +   TRNA       3022 -      3097   86.5  # Ala GGC 0 0
                               +   TRNA       3137 -      3212   86.5  # Ala GGC 0 0
                               +    Prom      3327 -      3386    3.2 
     4     3 Tu  1     .       +    CDS       3421 -      5610   1718  ## COG2200 FOG: EAL domain
                               +    Term      5617 -      5662    8.5 
                               -    Term      5602 -      5652   11.1 
     5     4 Tu  1     .       -    CDS       5660 -      6862   1655  ## COG1972 Nucleoside permease
                               -    Prom      6936 -      6995    5.0 
     6     5 Tu  1     .       +    CDS       7198 -      8436   1501  ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family
                               +    Term      8521 -      8564    3.9 
     7     6 Tu  1     .       -    CDS       8577 -      8903    292  ## ECDH10B_2555 hypothetical protein
                               -    Prom      8943 -      9002    2.6 
                               -    Term      8942 -      8975    1.3 
     8     7 Tu  1     .       -    CDS       9018 -     10274    981  ## COG0038 Chloride channel protein EriC
                               -    Prom     10449 -     10508    5.0 
                               +    Prom     10384 -     10443    2.5 
     9     8 Tu  1   3/0.625   +    CDS      10478 -     11443   1150  ## COG0837 Glucokinase
                               +    Term     11457 -     11492    5.1 
                               +    Prom     11573 -     11632    3.0 
    10     9 Op  1   7/0.062   +    CDS      11662 -     11988    583  ## COG1445 Phosphotransferase system fructose-specific component IIB
    11     9 Op  2   3/0.625   +    CDS      12010 -     13257   1514  ## COG1299 Phosphotransferase system, fructose-specific IIC component
    12     9 Op  3   3/0.625   +    CDS      13272 -     14357   1179  ## COG0006 Xaa-Pro aminopeptidase
    13     9 Op  4   3/0.625   +    CDS      14357 -     15394    907  ## COG1363 Cellulase M and related proteins
    14     9 Op  5     .       +    CDS      15419 -     17914   2723  ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
    15    10 Op  1   3/0.625   -    CDS      17917 -     18774    635  ## COG2207 AraC-type DNA-binding domain-containing proteins
    16    10 Op  2   9/0.031   -    CDS      18787 -     19521    770  ## COG3279 Response regulator of the LytR/AlgR family
    17    10 Op  3     .       -    CDS      19536 -     21215   1534  ## COG3275 Putative regulator of cell autolysis
                               -    Prom     21312 -     21371    4.7 
                               +    Prom     21368 -     21427    3.9 
    18    11 Tu  1     .       +    CDS      21609 -     22847   1279  ## COG0436 Aspartate/tyrosine/aromatic aminotransferase
                               +    Term     22870 -     22901    4.1 
                               -    Term     23265 -     23305    4.1 
    19    12 Tu  1     .       -    CDS      23339 -     24259    838  ## COG1560 Lauroyl/myristoyl acyltransferase
                               -    Prom     24496 -     24555    2.3 
                               +    Prom     24511 -     24570    4.3 
    20    13 Tu  1     .       +    CDS      24612 -     24854    282  ## JW2374 predicted inner membrane protein
                               +    Prom     25352 -     25411    7.2 
    21    14 Tu  1     .       +    CDS      25502 -     26137    601  ## JW2372 hypothetical protein
                               +    Term     26192 -     26240   10.3 
                               +    Prom     26565 -     26624    8.4 
    22    15 Op  1   4/0.406   +    CDS      26650 -     27900   1104  ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
                               +    Term     27908 -     27936    0.5 
    23    15 Op  2   3/0.625   +    CDS      27954 -     29648   1081  ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
    24    15 Op  3   2/0.812   +    CDS      29718 -     30662    668  ## COG0679 Predicted permeases
                               +    Term     30691 -     30727    2.2 
    25    15 Op  4     .       +    CDS      30736 -     31881    533  ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
                               +    Term     31904 -     31944    4.8 
                               -    Term     31892 -     31930    4.4 
    26    16 Tu  1     .       -    CDS      31937 -     34876   1146  ## COG0642 Signal transduction histidine kinase
                               -    Prom     34946 -     35005    3.4 
                               -    Term     35284 -     35325    3.0 
    27    17 Tu  1     .       -    CDS      35535 -     36149    350  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
                               -    Prom     36263 -     36322    6.9 
    28    18 Op  1  19/0.000   +    CDS      36565 -     37728    637  ## COG1566 Multidrug resistance efflux pump
    29    18 Op  2     .       +    CDS      37728 -     39266    414  ## COG0477 Permeases of the major facilitator superfamily
    30    19 Op  1   4/0.406   -    CDS      39374 -     40702   1106  ## COG3048 D-serine dehydratase
    31    19 Op  2     .       -    CDS      40720 -     42057   1326  ## COG2610 H+/gluconate symporter and related permeases
                               -    Prom     42223 -     42282    5.0 
                               +    Prom     42179 -     42238    6.6 
    32    20 Tu  1     .       +    CDS      42275 -     43210    351  ## COG0583 Transcriptional regulator
                               -    Term     43199 -     43245    2.5 
    33    21 Tu  1     .       -    CDS      43394 -     43594    178  ## JW5387 response regulator inhibitor for tor operon
                               -    Prom     43644 -     43703    2.3 
                               -    Term     43634 -     43659   -0.5 
    34    22 Tu  1     .       -    CDS      43726 -     43905    137  ## gi|191165574|ref|ZP_03027415.1| conserved domain protein
                               -    Prom     43941 -     44000    2.8 
    35    23 Op  1     .       -    CDS      44002 -     44631    433  ## EcHS_A0274 hypothetical protein
    36    23 Op  2     .       -    CDS      44633 -     45040    289  ## ECO26_1570 hypothetical protein
    37    24 Op  1     .       -    CDS      45338 -     45505    180  ## EcHS_A0277 hypothetical protein
    38    24 Op  2     .       -    CDS      45522 -     45836     60  ## LF82_p101 hypothetical protein
    39    24 Op  3     .       -    CDS      45848 -     46330    235  ## SFV_0264 hypothetical protein
    40    24 Op  4     .       -    CDS      46314 -     47216    584  ## COG3723 Recombinational DNA repair protein (RecE pathway)
    41    24 Op  5     .       -    CDS      47213 -     47521    282  ## SFV_0266 hypothetical protein
    42    24 Op  6     .       -    CDS      47606 -     47758     74  ## SeSA_A0612 hypothetical protein
    43    25 Tu  1     .       -    CDS      47877 -     48389    137  ## YE2335 hypothetical protein
                               -    Prom     48465 -     48524    3.6 
                               -    Term     48468 -     48497    0.4 
    44    26 Op  1     .       -    CDS      48602 -     49072    -27  ## ECO26_3378 hypothetical protein
    45    26 Op  2     .       -    CDS      49081 -     49296    125  ## ECS88_2544 regulatory protein N
                               -    Term     49566 -     49608    1.4 
    46    27 Op  1     .       -    CDS      49745 -     50113    141  ## gi|256021954|ref|ZP_05435819.1| hypothetical protein E4_01160
    47    27 Op  2     .       -    CDS      50133 -     50849    252  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
                               -    Prom     50876 -     50935    3.7 
                               +    Prom     50829 -     50888    8.0 
    48    28 Tu  1     .       +    CDS      50956 -     51150    228  ## ECL_03587 Cro protein
    49    29 Op  1     .       +    CDS      51259 -     51537    212  ## EC55989_2636 transcriptional activator protein C1 (modular protein)
    50    29 Op  2     .       +    CDS      51572 -     51718     61  ## ECO111_2710 hypothetical protein
    51    29 Op  3     .       +    CDS      51711 -     52376    172  ## SeSA_A0620 GP59
    52    30 Tu  1     .       +    CDS      52527 -     54365    287  ## EFER_2034 DNA transfer protein from phage
                               -    Term     54266 -     54292   -1.0 
    53    31 Tu  1     .       -    CDS      54390 -     54779    150  ## ECO111_2667 hypothetical protein
                               -    Prom     54948 -     55007    4.8 
                               -    Term     54989 -     55018   -0.2 
    54    32 Tu  1     .       -    CDS      55127 -     55381    104  ## UTI89_C2639 regulatory protein
                               -    Prom     55401 -     55460    4.5 
                               +    Prom     55225 -     55284    4.6 
    55    33 Op  1     .       +    CDS      55409 -     55633    132  ## ECO111_2664 putative transcriptional repressor
    56    33 Op  2     .       +    CDS      55702 -     56580    565  ## COG3617 Prophage antirepressor
                               +    Term     56598 -     56629    2.5 
                               +    Prom     56597 -     56656    3.8 
    57    34 Tu  1     .       +    CDS      56681 -     59047    555  ## UTI89_C2636 endo-alpha-sialidase
                               -    Term     58953 -     58986    1.0 
    58    35 Tu  1     .       -    CDS      59067 -     59738     83  ## COG0110 Acetyltransferase (isoleucine patch superfamily)
                               -    Prom     59860 -     59919    2.7 
    59    36 Tu  1     .       -    CDS      59931 -     61088    369  ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15
                               -    Prom     61118 -     61177    4.4 
                               -   TRNA      61250 -     61324   66.4  # Arg CCT 0 0
    60    37 Tu  1     .       -    CDS      61400 -     62332    924  ## COG2116 Formate/nitrite family of transporters
                               +    Prom     62489 -     62548    4.3 
    61    38 Tu  1     .       +    CDS      62626 -     63381    915  ## COG2853 Surface lipoprotein
                               +    Term     63386 -     63438   11.0 
                               -    Term     63384 -     63416    2.0 
    62    39 Tu  1     .       -    CDS      63563 -     64621    336  ## JW2342 hypothetical protein
                               -    Prom     64651 -     64710    9.9 
                               -    Term     64933 -     64965    5.6 
    63    40 Tu  1     .       -    CDS      64987 -     66327   1259  ## COG2067 Long-chain fatty acid transport protein
                               -    Prom     66428 -     66487    6.2 
    64    41 Tu  1     .       +    CDS      66699 -     66983    369  ## COG3691 Uncharacterized protein conserved in bacteria
                               +    Term     67001 -     67041   11.1 
                               +    Prom     67074 -     67133    4.9 
    65    42 Op  1  20/0.000   +    CDS      67164 -     68474   1418  ## COG0183 Acetyl-CoA acetyltransferase
    66    42 Op  2   5/0.250   +    CDS      68474 -     70618   1669  ## COG1250 3-hydroxyacyl-CoA dehydrogenase
                               +    Prom     70659 -     70718    5.5 
    67    43 Tu  1     .       +    CDS      70836 -     71306    468  ## COG2062 Phosphohistidine phosphatase SixA
                               +    Term     71318 -     71362   10.1 
                               +    Prom     71753 -     71812    8.8 
    68    44 Op  1   6/0.125   +    CDS      71987 -     72550    677  ## COG3539 P pilus assembly protein, pilin FimA
                               +    Term     72558 -     72595    6.2 
    69    44 Op  2  10/0.031   +    CDS      72632 -     75277   2509  ## COG3188 P pilus assembly protein, porin PapC
    70    44 Op  3   7/0.062   +    CDS      75297 -     76049    604  ## COG3121 P pilus assembly protein, chaperone PapD
                               +    Term     76089 -     76126   -1.0 
    71    45 Op  1   4/0.406   +    CDS      76223 -     76561    217  ## COG3539 P pilus assembly protein, pilin FimA
    72    45 Op  2   4/0.406   +    CDS      76558 -     77046    253  ## COG3539 P pilus assembly protein, pilin FimA
    73    45 Op  3     .       +    CDS      77043 -     77582    460  ## COG3539 P pilus assembly protein, pilin FimA
    74    45 Op  4     .       +    CDS      77584 -     78405    141  ## JW2329 hypothetical protein
                               -    Term     78406 -     78457    3.3 
    75    46 Tu  1     .       -    CDS      78476 -     79027    613  ## COG2840 Uncharacterized protein conserved in bacteria
                               -    Prom     79166 -     79225    3.4 
                               +    Prom     78996 -     79055    2.7 
    76    47 Op  1   3/0.625   +    CDS      79193 -     80125   1634  ## PROTEIN SUPPORTED gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase
    77    47 Op  2   7/0.062   +    CDS      80160 -     81245   1160  ## COG0082 Chorismate synthase
    78    47 Op  3   7/0.062   +    CDS      81249 -     82073    500  ## COG3770 Murein endopeptidase
    79    47 Op  4   5/0.250   +    CDS      82073 -     82882    884  ## COG0730 Predicted permeases
    80    47 Op  5     .       +    CDS      82882 -     83430    575  ## COG3101 Uncharacterized protein conserved in bacteria
    81    47 Op  6     .       +    CDS      83464 -     83742    373  ## ECB_02250 hypothetical protein
                               -    Term     83575 -     83616    1.9 
    82    48 Tu  1     .       -    CDS      83863 -     85869   1352  ## COG0665 Glycine/D-amino acid oxidases (deaminating)
                               -    Prom     85894 -     85953    3.7 
                               +    Prom     85933 -     85992    3.5 
    83    49 Tu  1     .       +    CDS      86028 -     87248   1394  ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase
                               +    Term     87328 -     87357    2.1 
                               +    Prom     87335 -     87394    4.5 
    84    50 Tu  1     .       +    CDS      87597 -     88691    986  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     88739 -     88769    1.8 
    85    51 Tu  1     .       -    CDS      88688 -     89683    817  ## B21_02206 hypothetical protein
                               -    Prom     89706 -     89765    3.4 
    86    52 Op  1   5/0.250   +    CDS      89782 -     90918   1197  ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
                               +    Term     90931 -     90971    5.1 
    87    52 Op  2   5/0.250   +    CDS      90984 -     91997   1197  ## COG0136 Aspartate-semialdehyde dehydrogenase
    88    52 Op  3   5/0.250   +    CDS      91997 -     92809    571  ## COG0101 Pseudouridylate synthase
    89    52 Op  4   5/0.250   +    CDS      92892 -     93551    558  ## COG0586 Uncharacterized membrane-associated protein
                               +    Prom     93554 -     93613    4.7 
    90    53 Op  1  15/0.000   +    CDS      93707 -     94621   1029  ## COG0777 Acetyl-CoA carboxylase beta subunit
                               +    Term     94626 -     94671   10.6 
    91    53 Op  2   7/0.062   +    CDS      94691 -     95959   1198  ## COG0285 Folylpolyglutamate synthase
    92    53 Op  3   7/0.062   +    CDS      95949 -     96611    676  ## COG3147 Uncharacterized protein conserved in bacteria
                               +    Term     96740 -     96781    6.4 
                               +    Prom     96775 -     96834    4.8 
    93    54 Op  1  18/0.000   +    CDS      96870 -     97358    420  ## COG1286 Uncharacterized membrane protein, required for colicin V production
    94    54 Op  2   5/0.250   +    CDS      97395 -     98912   1611  ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
    95    54 Op  3   5/0.250   +    CDS      99007 -     99576    484  ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase
                               +    Term     99585 -     99615    3.6 
                               +    Prom     99583 -     99642    2.4 
    96    55 Tu  1   9/0.031   +    CDS      99842 -    100624    950  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
                               +    Term    100742 -    100785    0.2 
                               +    Prom    100675 -    100734    4.3 
    97    56 Op  1  12/0.000   +    CDS     100845 -    101627    925  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
    98    56 Op  2  12/0.000   +    CDS     101717 -    102403    742  ## COG4215 ABC-type arginine transport system, permease component
    99    56 Op  3   6/0.125   +    CDS     102400 -    103116    597  ## COG4160 ABC-type arginine/histidine transport system, permease component
   100    56 Op  4   3/0.625   +    CDS     103124 -    103897    256  ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc)
                               +    Term    103904 -    103941    6.0 
                               +    Prom    104006 -    104065    3.4 
   101    57 Tu  1     .       +    CDS     104094 -    104984    467  ## COG5464 Uncharacterized conserved protein
                               +    Term    105006 -    105067    1.8 
   102    58 Op  1   3/0.625   -    CDS     105032 -    105925    797  ## COG1090 Predicted nucleoside-diphosphate sugar epimerase
   103    58 Op  2   3/0.625   -    CDS     105946 -    106308    422  ## COG1539 Dihydroneopterin aldolase
   104    58 Op  3     .       -    CDS     106365 -    107012    589  ## COG0625 Glutathione S-transferase
                               -    Prom    107041 -    107100    3.9 
                               +    Prom    107061 -    107120    2.0 
   105    59 Op  1   2/0.812   +    CDS     107148 -    107792    486  ## COG0625 Glutathione S-transferase
   106    59 Op  2   3/0.625   +    CDS     107848 -    108399    551  ## COG0622 Predicted phosphoesterase
   107    60 Tu  1     .       +    CDS     108457 -    108999    655  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
                               +    Term    109007 -    109032   -0.5 
                               -    Term    108992 -    109022    3.0 
   108    61 Tu  1     .       -    CDS     109032 -    110552   1639  ## COG1288 Predicted membrane protein
                               -    Prom    110629 -    110688    4.3 
                               -    Term    110664 -    110704    6.8 
   109    62 Op  1  14/0.000   -    CDS     110742 -    112886   2418  ## COG0857 BioD-like N-terminal domain of phosphotransacetylase
                               -    Term    112918 -    112957   10.1 
   110    62 Op  2     .       -    CDS     112961 -    114163   1285  ## COG0282 Acetate kinase
                               -    Prom    114385 -    114444    3.0 
                               +    Prom    114284 -    114343    4.8 
   111    63 Op  1   2/0.812   +    CDS     114501 -    114956    381  ## COG3092 Uncharacterized protein conserved in bacteria
                               +    Term    114982 -    115012   -0.5 
   112    63 Op  2     .       +    CDS     115039 -    115533    645  ## COG3013 Uncharacterized conserved protein
   113    63 Op  3   2/0.812   +    CDS     115526 -    116194    538  ## COG0637 Predicted phosphatase/phosphohexomutase
                               +    Term    116214 -    116243    1.1 
                               +    Prom    116196 -    116255    2.5 
   114    64 Tu  1     .       +    CDS     116281 -    118113   1582  ## COG0471 Di- and tricarboxylate transporters
                               +    Term    118343 -    118378   -0.5 
   115    65 Op  1   6/0.125   -    CDS     118172 -    118771    716  ## COG1896 Predicted hydrolases of HD superfamily
   116    65 Op  2     .       -    CDS     118855 -    120072   1130  ## COG0436 Aspartate/tyrosine/aromatic aminotransferase
                               -    Prom    120124 -    120183    1.9 
   117    66 Tu  1     .       +    CDS     120992 -    121930    870  ## COG0583 Transcriptional regulator
                               +    Term    121974 -    122019    9.3 
                               +    Prom    122412 -    122471    6.5 
   118    67 Op  1  30/0.000   +    CDS     122567 -    123004    500  ## COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A)
   119    67 Op  2   9/0.031   +    CDS     123020 -    123682    727  ## COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases
   120    68 Op  1  15/0.000   +    CDS     123788 -    125578   2218  ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7
   121    68 Op  2  23/0.000   +    CDS     125581 -    126081    467  ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
   122    68 Op  3  12/0.000   +    CDS     126078 -    127415   1443  ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
   123    68 Op  4  18/0.000   +    CDS     127468 -    130194   2833  ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)
   124    68 Op  5  31/0.000   +    CDS     130191 -    131168   1208  ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H)
   125    68 Op  6  28/0.000   +    CDS     131183 -    131725    668  ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
   126    68 Op  7  30/0.000   +    CDS     131737 -    132291    825  ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J)
   127    68 Op  8  26/0.000   +    CDS     132288 -    132590    460  ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)
   128    68 Op  9  30/0.000   +    CDS     132587 -    134428   2285  ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
                               +    Prom    134500 -    134559    1.9 
   129    68 Op 10  22/0.000   +    CDS     134592 -    136121   1815  ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)
   130    68 Op 11     .       +    CDS     136128 -    137585   1858  ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N)
                               +    Term    137609 -    137641    3.0 
                               -    Term    137596 -    137628    3.0 
   131    69 Op  1     .       -    CDS     137669 -    138517    393  ## JW2270 hypothetical protein
   132    69 Op  2     .       -    CDS     138576 -    138998    206  ## JW2269 hypothetical protein
                               -    Prom    139174 -    139233    4.4 
                               +    Prom    138949 -    139008    5.2 
   133    70 Tu  1     .       +    CDS     139207 -    139923    251  ## JW2268 hypothetical protein
   134    71 Tu  1     .       -    CDS     140196 -    140699    632  ## JW2267 hypothetical protein
                               -    Prom    140725 -    140784    4.1 
   135    72 Tu  1     .       -    CDS     140802 -    141722    474  ## COG2234 Predicted aminopeptidases
                               -    Prom    141864 -    141923    8.1 
                               +    Prom    141698 -    141757    8.7 
   136    73 Tu  1     .       +    CDS     141932 -    143638   1108  ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
                               +    Term    143659 -    143704   14.6 
                               -    Term    143644 -    143692    9.2 
   137    74 Op  1     .       -    CDS     143709 -    144917    449  ## B21_02155 hypothetical protein
                               -    Prom    144977 -    145036    4.0 
                               -    Term    145060 -    145086   -0.6 
   138    74 Op  2     .       -    CDS     145108 -    146025    619  ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III
                               -    Prom    146051 -    146110    5.0 
                               +    Prom    146010 -    146069    4.9 
   139    75 Op  1   4/0.406   +    CDS     146090 -    146551    471  ## COG2153 Predicted acyltransferase
   140    75 Op  2   1/0.938   +    CDS     146606 -    146911    527  ## COG4575 Uncharacterized conserved protein
   141    75 Op  3  10/0.031   +    CDS     146990 -    148132    904  ## COG1169 Isochorismate synthase
                               + SSU_RRNA   148128 -    148481  100.0  # AY958844 [D:1..1893] # 16S ribosomal RNA # uncultured bacterium #  Bacteria; environmental samples.
                               +    Prom    148407 -    148466   80.4 
   142    76 Op  1  15/0.000   +    CDS     148545 -    150044   1552  ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   143    76 Op  2   9/0.031   +    CDS     150041 -    150799    602  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
   144    76 Op  3   5/0.250   +    CDS     150814 -    151671    959  ## COG0447 Dihydroxynaphthoic acid synthase
   145    76 Op  4   6/0.125   +    CDS     151671 -    152633   1100  ## COG1441 O-succinylbenzoate synthase
   146    76 Op  5     .       +    CDS     152630 -    153985   1142  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
                               +    Prom    154002 -    154061    4.9 
   147    77 Tu  1     .       +    CDS     154095 -    154361    199  ## B21_02145 hypothetical protein
                               +    Term    154498 -    154541    2.9 
   148    78 Op  1   9/0.031   -    CDS     154355 -    154741    432  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
   149    78 Op  2   5/0.250   -    CDS     154741 -    155076    383  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
   150    78 Op  3   6/0.125   -    CDS     155073 -    156725   1475  ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
   151    78 Op  4   8/0.031   -    CDS     156725 -    157615    826  ## COG0726 Predicted xylanase/chitin deacetylase
   152    78 Op  5  12/0.000   -    CDS     157612 -    159594   1707  ## COG0451 Nucleoside-diphosphate-sugar epimerases
   153    78 Op  6   5/0.250   -    CDS     159594 -    160562    843  ## COG0463 Glycosyltransferases involved in cell wall biogenesis
   154    78 Op  7     .       -    CDS     160566 -    161723    940  ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
                               -    Prom    161761 -    161820    7.4 
                               +    Prom    161806 -    161865    5.8 
   155    79 Tu  1     .       +    CDS     162013 -    162615    238  ## ECUMN_2593 hypothetical protein
                               +    Term    162626 -    162661    5.1 
                               -    Term    162607 -    162650    1.6 
   156    80 Tu  1     .       -    CDS     162654 -    163079    382  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
                               -    Prom    163106 -    163165    7.3 
   157    81 Op  1     .       +    CDS     163358 -    163900    723  ## B21_02135 hypothetical protein
                               +    Prom    163919 -    163978    4.2 
   158    81 Op  2   4/0.406   +    CDS     164000 -    165202   1208  ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
                               +    Prom    165204 -    165263    2.4 
   159    82 Op  1   5/0.250   +    CDS     165422 -    166204    578  ## COG1414 Transcriptional regulator
   160    82 Op  2   7/0.062   +    CDS     166219 -    167424   1140  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
                               +    Term    167432 -    167473    8.6 
   161    83 Op  1   6/0.125   +    CDS     167481 -    168770   1356  ## COG0477 Permeases of the major facilitator superfamily
   162    83 Op  2     .       +    CDS     168788 -    169591    930  ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
                               +    Term    169595 -    169639    4.2 
   163    84 Op  1   1/0.938   -    CDS     169632 -    169817    321  ## COG5464 Uncharacterized conserved protein
   164    84 Op  2   3/0.625   -    CDS     169830 -    170729    815  ## COG5464 Uncharacterized conserved protein
                               -    Prom    170756 -    170815    2.0 
                               -    Term    170868 -    170911    7.6 
   165    85 Op  1   8/0.031   -    CDS     170922 -    172112   1157  ## COG0247 Fe-S oxidoreductase
   166    85 Op  2   9/0.031   -    CDS     172109 -    173368   1177  ## COG3075 Anaerobic glycerol-3-phosphate dehydrogenase
   167    85 Op  3     .       -    CDS     173358 -    174986   1773  ## COG0578 Glycerol-3-phosphate dehydrogenase
                               -    Prom    175092 -    175151    4.5 
                               +    Prom    175080 -    175139    6.4 
   168    86 Op  1   6/0.125   +    CDS     175259 -    176617   1457  ## COG2271 Sugar phosphate permease
   169    86 Op  2     .       +    CDS     176622 -    177698   1160  ## COG0584 Glycerophosphoryl diester phosphodiesterase
                               +    Term    177709 -    177742    4.5 
                               -    Term    177495 -    177538   -0.9 
   170    87 Tu  1     .       -    CDS     177740 -    177946    265  ## COG0583 Transcriptional regulator
                               -    Prom    177966 -    178025    4.1 
                               +    Prom    177917 -    177976    4.5 
   171    88 Tu  1     .       +    CDS     178161 -    178811    557  ## B21_02122 hypothetical protein
                               -    Term    178737 -    178769   -0.9 
   172    89 Op  1   8/0.031   -    CDS     178865 -    179119    156  ## COG0633 Ferredoxin
   173    89 Op  2  24/0.000   -    CDS     179119 -    180249   1560  ## COG0208 Ribonucleotide reductase, beta subunit
                               -    Prom    180397 -    180456    5.4 
   174    89 Op  3     .       -    CDS     180483 -    182768   2783  ## COG0209 Ribonucleotide reductase, alpha subunit
                               -    Prom    182905 -    182964    3.0 
   175    90 Tu  1     .       +    CDS     183512 -    187216   2921  ## COG3468 Type V secretory pathway, adhesin AidA
   176    91 Tu  1     .       -    CDS     187344 -    188066    803  ## COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
                               -    Prom    188093 -    188152    5.2 
                               +    Prom    188116 -    188175    6.4 
   177    92 Tu  1     .       +    CDS     188213 -    190840   3290  ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
                               +    Term    190862 -    190888   -1.0 
                               +    Prom    190855 -    190914    3.5 
   178    93 Op  1   2/0.812   +    CDS     190989 -    192677   1285  ## COG4685 Uncharacterized protein conserved in bacteria
   179    93 Op  2   3/0.625   +    CDS     192674 -    193297    322  ## COG3234 Uncharacterized protein conserved in bacteria
   180    93 Op  3   4/0.406   +    CDS     193231 -    197835   3790  ## COG2373 Large extracellular alpha-helical protein
   181    93 Op  4   5/0.250   +    CDS     197836 -    199485   1131  ## COG5445 Predicted secreted protein
   182    93 Op  5     .       +    CDS     199490 -    200266    602  ## COG4676 Uncharacterized protein conserved in bacteria
                               +    Term    200295 -    200351   12.6 
                               -    Term    200292 -    200329    7.1 
   183    94 Op  1   4/0.406   -    CDS     200340 -    201524   1351  ## COG0183 Acetyl-CoA acetyltransferase
   184    94 Op  2   4/0.406   -    CDS     201555 -    202877   1001  ## COG2031 Short chain fatty acids transporter
   185    94 Op  3  21/0.000   -    CDS     202874 -    203524    520  ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit
   186    94 Op  4   1/0.938   -    CDS     203524 -    204186    594  ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit
                               -    Prom    204264 -    204323    5.2 
                               -    Term    204313 -    204370    2.6 
   187    95 Op  1  13/0.000   -    CDS     204382 -    205767    976  ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
   188    95 Op  2     .       -    CDS     205764 -    207590   1354  ## COG0642 Signal transduction histidine kinase
                               +    Prom    207614 -    207673    1.9 
   189    96 Tu  1     .       +    CDS     207757 -    210606   1964  ## COG0642 Signal transduction histidine kinase
                               +    Term    210618 -    210682    4.2 
                               -    Term    210605 -    210667   11.5 
   190    97 Op  1  12/0.000   -    CDS     210806 -    211456    817  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
   191    97 Op  2     .       -    CDS     211473 -    214145   2481  ## COG0642 Signal transduction histidine kinase
                               -    Prom    214366 -    214425    5.3 
                               +    Prom    214710 -    214769    3.6 
   192    98 Tu  1     .       +    CDS     214884 -    215987   1312  ## COG3203 Outer membrane protein (porin)
                               +    Term    216002 -    216043    5.0 
                               +    Prom    216015 -    216074    2.0 
   193    99 Op  1   3/0.625   +    CDS     216099 -    217154   1294  ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis
   194    99 Op  2   4/0.406   +    CDS     217228 -    218292    650  ## COG2169 Adenosine deaminase
   195    99 Op  3   4/0.406   +    CDS     218295 -    218942    509  ## COG3145 Alkylated DNA repair protein
   196    99 Op  4   3/0.625   +    CDS     219018 -    220661    197  ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P
                               +    Prom    220729 -    220788    5.9 
   197   100 Tu  1     .       +    CDS     220879 -    222525   1835  ## COG0579 Predicted dehydrogenase
Predicted protein(s)
>gi|223713595|gb|ACDM01000003.1| GENE     1       581  -      1996   1634    471 aa, chain + ## HITS:1  COG:gltX KEGG:ns NR:ns ## COG: gltX COG0008 # Protein_GI_number: 16130330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1     471       1     471     471     983  100.0  0
MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDG
MNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSKERLEALREEQMAKGEKPR
YDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPIEFSNQELDDLIIRRTDGSPT
YNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALKAPVPVYAHVSMINGDDGKKLSK
RHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFTREEMIKYFTLNAVSKSASAFNT
DKLLWLNHHYINALPPEYVATHLQWHIEQENIDTRNGPQLADLVKLLGERCKTLKEMAQS
CRYFYEDFAEFDADAAKKHLRPVARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVG
MGKVGMPLRVAVTGAGQSPALDVTVHAIGKTRSIERINKALDFIAERENQQ
>gi|223713595|gb|ACDM01000003.1| GENE     2      2048  -      2440    263    130 aa, chain - ## HITS:1  COG:no KEGG:JW2394 NR:ns ## KEGG: JW2394 # Name: yfeD # Def: predicted DNA-binding transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1     130       1     130     130     250  100.0  1e-65
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
LARLDIDESA
>gi|223713595|gb|ACDM01000003.1| GENE     3      2442  -      2801    347    119 aa, chain - ## HITS:1  COG:no KEGG:SDY_2596 NR:ns ## KEGG: SDY_2596 # Name: yfeC # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1     119       1     119     119     216  100.0  2e-55
MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA
ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK
>gi|223713595|gb|ACDM01000003.1| GENE     4      3421  -      5610   1718    729 aa, chain + ## HITS:1  COG:yfeA_3 KEGG:ns NR:ns ## COG: yfeA_3 COG2200 # Protein_GI_number: 16130327 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 472     729       1     258     258     524  100.0  1e-148
MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFLAWMPLCVMQSILFIFG
WRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRY
VWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYN
MLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDFIA
GYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLNYNQNFLQGVETEYSLAFILAVLIS
FSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLLPNFRALEQAPEQEAGKSFCCLRIDNL
EFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNI
LNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEM
VSGQTTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLP
LIAQFNLSARFDLQVLESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRY
HISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADII
KIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYL
IGRPQPLAD
>gi|223713595|gb|ACDM01000003.1| GENE     5      5660  -      6862   1655    400 aa, chain - ## HITS:1  COG:nupC KEGG:ns NR:ns ## COG: nupC COG1972 # Protein_GI_number: 16130325 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1     400       1     400     400     653  100.0  0
MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGF
SEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRA
IGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMS
IVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLG
EYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMG
VPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIA
GAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
>gi|223713595|gb|ACDM01000003.1| GENE     6      7198  -      8436   1501    412 aa, chain + ## HITS:1  COG:ECs3271 KEGG:ns NR:ns ## COG: ECs3271 COG1914 # Protein_GI_number: 15832525 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Escherichia coli O157:H7 # 1     412       1     412     412     697  100.0  0
MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWAN
LMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGF
KLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLA
QLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVA
IAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGL
SSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGI
ALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL
>gi|223713595|gb|ACDM01000003.1| GENE     7      8577  -      8903    292    108 aa, chain - ## HITS:1  COG:no KEGG:ECDH10B_2555 NR:ns ## KEGG: ECDH10B_2555 # Name: ypeC # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1     108       1     108     108     165  100.0  6e-40
MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYE
WRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH
>gi|223713595|gb|ACDM01000003.1| GENE     8      9018  -     10274    981    418 aa, chain - ## HITS:1  COG:ECs3269 KEGG:ns NR:ns ## COG: ECs3269 COG0038 # Protein_GI_number: 15832523 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli O157:H7 # 1     418       1     418     418     638  100.0  0
MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWII
GVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPE
HPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEV
PLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVA
VWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSD
YFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIV
LVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV
>gi|223713595|gb|ACDM01000003.1| GENE     9     10478  -     11443   1150    321 aa, chain + ## HITS:1  COG:ECs3268 KEGG:ns NR:ns ## COG: ECs3268 COG0837 # Protein_GI_number: 15832522 # Func_class: G Carbohydrate transport and metabolism # Function: Glucokinase # Organism: Escherichia coli O157:H7 # 1     321       1     321     321     659  100.0  0
MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGC
IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG
GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAE
IGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVI
MGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV
HDNPGLLGSGAHLRQTLGHIL
>gi|223713595|gb|ACDM01000003.1| GENE    10     11662  -     11988    583    108 aa, chain + ## HITS:1  COG:ECs3267 KEGG:ns NR:ns ## COG: ECs3267 COG1445 # Protein_GI_number: 15832521 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Escherichia coli O157:H7 # 1     108       1     108     108     169  100.0  1e-42
MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATI
IIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ
>gi|223713595|gb|ACDM01000003.1| GENE    11     12010  -     13257   1514    415 aa, chain + ## HITS:1  COG:ypdG KEGG:ns NR:ns ## COG: ypdG COG1299 # Protein_GI_number: 16130318 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 1     415       1     415     415     704  100.0  0
MAIKKRSATVVPGASGAAAAVKNPQASKTSFWGELPQHVMSGISRMVPTLIMGGVILAFS
QLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSFGGVLFGFAIPMFAAFVAN
SIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPVPSTFIGALIISIVAGYLVKW
MNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTVLTAAGEKGAL
MYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATIIDRR
LTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTAAVWLG
AVQWFPESAIWAWPLVTNLGVYMAGIALGAVITALMVVFLRLMMFRKGKLLIDSL
>gi|223713595|gb|ACDM01000003.1| GENE    12     13272  -     14357   1179    361 aa, chain + ## HITS:1  COG:ypdF KEGG:ns NR:ns ## COG: ypdF COG0006 # Protein_GI_number: 16130317 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1     361       1     361     361     709   99.0  0
MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVE
ARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSAT
PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKAS
FDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESH
PLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHE
DPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGE
A
>gi|223713595|gb|ACDM01000003.1| GENE    13     14357  -     15394    907    345 aa, chain + ## HITS:1  COG:ypdE KEGG:ns NR:ns ## COG: ypdE COG1363 # Protein_GI_number: 16130316 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1     345       1     345     345     675  100.0  0
MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMIC
AHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDV
SAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRE
LHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIG
NGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVM
GPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR
>gi|223713595|gb|ACDM01000003.1| GENE    14     15419  -     17914   2723    831 aa, chain + ## HITS:1  COG:ECs3263_2 KEGG:ns NR:ns ## COG: ECs3263_2 COG1080 # Protein_GI_number: 15832517 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli O157:H7 # 98     683       1     586     586    1113   99.0  0
MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKADAKSSLALIGTGTLFN
DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN
VLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTI
LSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD
ISEQLLHITWPELKPRNKLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTL
ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQK
QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQ
EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR
TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE
VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT
AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ
ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH
PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLAKPIGWQSEMGEVELVI
MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF
>gi|223713595|gb|ACDM01000003.1| GENE    15     17917  -     18774    635    285 aa, chain - ## HITS:1  COG:ypdC KEGG:ns NR:ns ## COG: ypdC COG2207 # Protein_GI_number: 16130314 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     285       1     285     285     574  100.0  1e-164
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYG
NLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPA
RQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGD
FLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARM
ILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
>gi|223713595|gb|ACDM01000003.1| GENE    16     18787  -     19521    770    244 aa, chain - ## HITS:1  COG:ECs3261 KEGG:ns NR:ns ## COG: ECs3261 COG3279 # Protein_GI_number: 15832515 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1     244       1     244     244     483  100.0  1e-136
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLD
GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQ
QQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNI
TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ
LMHL
>gi|223713595|gb|ACDM01000003.1| GENE    17     19536  -     21215   1534    559 aa, chain - ## HITS:1  COG:ECs3260 KEGG:ns NR:ns ## COG: ECs3260 COG3275 # Protein_GI_number: 15832514 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Escherichia coli O157:H7 # 1     559       7     565     565    1123  100.0  0
MLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPV
EGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISG
WINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGF
IVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAI
TNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLW
EKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQS
KINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDY
IAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECG
NRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEI
AFYIPNQRTPVASQATLLL
>gi|223713595|gb|ACDM01000003.1| GENE    18     21609  -     22847   1279    412 aa, chain + ## HITS:1  COG:yfdZ KEGG:ns NR:ns ## COG: yfdZ COG0436 # Protein_GI_number: 16130311 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1     412       1     412     412     847  100.0  0
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
>gi|223713595|gb|ACDM01000003.1| GENE    19     23339  -     24259    838    306 aa, chain - ## HITS:1  COG:ECs3258 KEGG:ns NR:ns ## COG: ECs3258 COG1560 # Protein_GI_number: 15832512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1     306      23     328     328     625  100.0  1e-179
MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRIGAMARPFLKRRESIAR
KNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDSRVRKWFDVEGLDNLKRAQ
MQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQLMEWVQTRGRMRSNKAMIGRN
NLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVENVATTNGTYVLSRLSGAAMLTVT
MVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKIIEKEIMRAPEQYLWIHRRFKTRPVG
ESSLYI
>gi|223713595|gb|ACDM01000003.1| GENE    20     24612  -     24854    282     80 aa, chain + ## HITS:1  COG:no KEGG:JW2374 NR:ns ## KEGG: JW2374 # Name: yfdY # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1      80       1      80      80     115  100.0  5e-25
MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF
MFLAPACGLMIRFMVGYGRR
>gi|223713595|gb|ACDM01000003.1| GENE    21     25502  -     26137    601    211 aa, chain + ## HITS:1  COG:no KEGG:JW2372 NR:ns ## KEGG: JW2372 # Name: yfdX # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     211       1     211     211     325  100.0  5e-88
MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDV
QVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGIS
ESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQK
LLDKKQYYEANLALKGAEDGIIVDSEALFVN
>gi|223713595|gb|ACDM01000003.1| GENE    22     26650  -     27900   1104    416 aa, chain + ## HITS:1  COG:yfdW KEGG:ns NR:ns ## COG: yfdW COG1804 # Protein_GI_number: 16130306 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 1     416       1     416     416     830  100.0  0
MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYF
TMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLI
FGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGL
LAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP
RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHA
RQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVE
QPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQELGYSDDEIAAMKQNHAI
>gi|223713595|gb|ACDM01000003.1| GENE    23     27954  -     29648   1081    564 aa, chain + ## HITS:1  COG:ECs3253 KEGG:ns NR:ns ## COG: ECs3253 COG0028 # Protein_GI_number: 15832507 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli O157:H7 # 1     564       1     564     564    1080  100.0  0
MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYA
AAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEE
LDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEA
LTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQI
PFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQ
LDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMH
EKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTW
GVMGIGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRG
DGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINV
VIDPAAGTESGHITKLNPKQVAGN
>gi|223713595|gb|ACDM01000003.1| GENE    24     29718  -     30662    668    314 aa, chain + ## HITS:1  COG:ECs3252 KEGG:ns NR:ns ## COG: ECs3252 COG0679 # Protein_GI_number: 15832506 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1     314       1     314     314     531  100.0  1e-151
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM
IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI
YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV
LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV
VTAPLWIYVSRLVS
>gi|223713595|gb|ACDM01000003.1| GENE    25     30736  -     31881    533    381 aa, chain + ## HITS:1  COG:yfdE KEGG:ns NR:ns ## COG: yfdE COG1804 # Protein_GI_number: 16130303 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 1     381      14     394     394     796  100.0  0
MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQ
SLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEIN
PRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYL
FSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD
VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKT
QAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPH
VMPGAATLDQHGEQIRQEFSS
>gi|223713595|gb|ACDM01000003.1| GENE    26     31937  -     34876   1146    979 aa, chain - ## HITS:1  COG:evgS_2 KEGG:ns NR:ns ## COG: evgS_2 COG0642 # Protein_GI_number: 16130302 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 313     732       1     420     420     845  100.0  0
MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWLDT
GNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQ
TGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVFVMQKAP
DSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKVKEGELDALVATQLN
SRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPSEVLRLTEKW
IKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFR
KALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEV
TAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINAL
EVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATG
QSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPE
HYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQ
EEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI
SQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV
SMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLF
KPLTLDVLKTHLSQLHQVAHIAPQYRHLDIEALKNNTANDLQLMQEILMTFQHETHKDLP
AAFQALEAGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLLNSV
KEHIAELDQEIAVFCQKND
>gi|223713595|gb|ACDM01000003.1| GENE    27     35535  -     36149    350    204 aa, chain - ## HITS:1  COG:ECs3248 KEGG:ns NR:ns ## COG: ECs3248 COG2197 # Protein_GI_number: 15832502 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     204       1     204     204     392  100.0  1e-109
MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG
IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY
CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS
RLMEKLECKSLMDLYTFAQRNKIG
>gi|223713595|gb|ACDM01000003.1| GENE    28     36565  -     37728    637    387 aa, chain + ## HITS:1  COG:emrK KEGG:ns NR:ns ## COG: emrK COG1566 # Protein_GI_number: 16130300 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     387       1     387     387     711  100.0  0
MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQ
VSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSA
EVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKAL
VMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVV
PARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQN
ATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPA
YTSKALVIDTSPIEKEISNIISHNGQL
>gi|223713595|gb|ACDM01000003.1| GENE    29     37728  -     39266    414    512 aa, chain + ## HITS:1  COG:emrY KEGG:ns NR:ns ## COG: emrY COG0477 # Protein_GI_number: 16130299 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     512       1     512     512     911  100.0  0
MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVIT
SFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMA
GPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVP
MGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIII
LTVVSVISLISLVIWESTSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQ
ETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNKIDMRLLVTFSFLMYAVCYYWRSVTFM
PTIDFTGIILPQFFQGFAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL
TMTLWGRRESLHHSQLTATIDQFNPVFNSSSQIMDKYYGSLSGVLNEINNEITQQSLSIS
ANEIFRMAAIAFILLTVLVWFAKPPFTAKGVG
>gi|223713595|gb|ACDM01000003.1| GENE    30     39374  -     40702   1106    442 aa, chain - ## HITS:1  COG:dsdA KEGG:ns NR:ns ## COG: dsdA COG3048 # Protein_GI_number: 16130298 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Escherichia coli K12 # 1     442       1     442     442     871  100.0  0
MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFA
PYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKAR
GGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA
RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDEN
SRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVH
CFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGF
YTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHL
VWATGGGMVPEEEMNQYLAKGR
>gi|223713595|gb|ACDM01000003.1| GENE    31     40720  -     42057   1326    445 aa, chain - ## HITS:1  COG:dsdX KEGG:ns NR:ns ## COG: dsdX COG2610 # Protein_GI_number: 16130297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1     445       1     445     445     715  100.0  0
MHSQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGTMMGMGPLDMVNAIESGIG
GTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSVDVIMVLVGLICGITLFVEV
GVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALYVANKLGADIGSVIV
YGLLVGLMASLIGGPLFLKFLGQRLPFKPVPTEFADLKVRDEKTLPSLGATLFTILLPIA
LMLVKTIAELNMARESGLYILVEFIGNPITAMFIAVFVAYYVLGIRQHMSMGTMLTHTEN
GFGSIANILLIIGAGGAFNAILKSSSLADTLAVILSNMHMHPILLAWLVALILHAAVGSA
TVAMMGATAIVAPMLPLYPDISPEIIAIAIGSGAIGCTIVTDSLFWLVKQYCGATLNETF
KYYTTATFIASVVALAGTFLLSFII
>gi|223713595|gb|ACDM01000003.1| GENE    32     42275  -     43210    351    311 aa, chain + ## HITS:1  COG:dsdC KEGG:ns NR:ns ## COG: dsdC COG0583 # Protein_GI_number: 16130296 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     311       1     311     311     636  100.0  0
MEPLREIRNRLLNGWQLSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQ
LFVRSHRKVELTHEGKRVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVP
ALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSP
EYAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDL
AVIAAMNHIGVAMGRKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFI
IWLREQVKTTS
>gi|223713595|gb|ACDM01000003.1| GENE    33     43394  -     43594    178     66 aa, chain - ## HITS:1  COG:no KEGG:JW5387 NR:ns ## KEGG: JW5387 # Name: torI # Def: response regulator inhibitor for tor operon # Organism: E.coli_J # Pathway: not_defined # 1      66       1      66      66     137  100.0  1e-31
MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL
LSRANG
>gi|223713595|gb|ACDM01000003.1| GENE    34     43726  -     43905    137     59 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|191165574|ref|ZP_03027415.1| ## NR: gi|191165574|ref|ZP_03027415.1| conserved domain protein [Escherichia coli B7A] # 1      59       1      59      59      94  100.0  3e-18
MSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNEFVKINKEREGNEKS
>gi|223713595|gb|ACDM01000003.1| GENE    35     44002  -     44631    433    209 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A0274 NR:ns ## KEGG: EcHS_A0274 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1     208       1     208     213     398   97.0  1e-110
MSAITKERIKLFIKNPLDNGLTRGEQMELARIALASLEREQIRHEHAKWSDSTFGCVGPI
GPLKHLSKEALEAAAEPDDLSEWADMQFLLWDAQRRAGISDAEITAAMENKLKINMERQW
PEPKDGEPRLHIKEPGNSPVTPDGWISCSDRMPEDTKMLLAFSQGKIVAAYWNWVINPID
YKKYRAFTYLSGYILDDVTHWMPLPEPPL
>gi|223713595|gb|ACDM01000003.1| GENE    36     44633  -     45040    289    135 aa, chain - ## HITS:1  COG:no KEGG:ECO26_1570 NR:ns ## KEGG: ECO26_1570 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     135       1     135     135     247   97.0  7e-65
MNKIDYQALREAAEKAGEDKWQAKKINGDFFVIRHGSYTRQHGYTSYQPIAEIDCKQVRD
FVAKANPATVLELLDELEAAKKRIAELKAREILLPERSSMLHRTDFHDDYQTVMAYKVSE
VIDAIRATGIRIKGE
>gi|223713595|gb|ACDM01000003.1| GENE    37     45338  -     45505    180     55 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A0277 NR:ns ## KEGG: EcHS_A0277 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1      55       1      55      55      87   92.0  2e-16
MRGLAYNPGILPAEMIIRQRVKPMPSREELLKRNSFGSVNDNKYLNAMLRKGGKQ
>gi|223713595|gb|ACDM01000003.1| GENE    38     45522  -     45836     60    104 aa, chain - ## HITS:1  COG:no KEGG:LF82_p101 NR:ns ## KEGG: LF82_p101 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_LF82 # Pathway: not_defined # 1     104       1     104     104     164  100.0  1e-39
MKKTPWEKWEVDFLREVAATMPVEVIAEKLERTEKAVMAKATRIGADIVSRLRGRRWTRA
EVSLFGKFSAEEIAIATCRSIYSVRAMRYKLKKLDEERAGIRIN
>gi|223713595|gb|ACDM01000003.1| GENE    39     45848  -     46330    235    160 aa, chain - ## HITS:1  COG:no KEGG:SFV_0264 NR:ns ## KEGG: SFV_0264 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1     160       1     160     160     253   94.0  2e-66
MSKLYEIANEYAKLMDSDLEPEMIADTIEGMEGEFTDKIEQLLSVIKNESGYAERLKEEA
KSLNERAAVIQNKIDSIKSYIASSLEMVGKKNIRAGIHQVTIRKPSETVEIIDSSALPPE
YLEFETTIKADKLAIKHQLKAGINIPGAQLKVGKPSLLIK
>gi|223713595|gb|ACDM01000003.1| GENE    40     46314  -     47216    584    300 aa, chain - ## HITS:1  COG:recT KEGG:ns NR:ns ## COG: recT COG3723 # Protein_GI_number: 16129310 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Escherichia coli K12 # 2     220      27     251     269      72   28.0  1e-12
MSNIVEFVKQQEQLFCGALTEQTVTWAKESQFAIQYFQKNDYLAKTALANPTSAQNAIIN
VAAIGITLNPASKLAYLVPRDGMVCLDISYMGLLHLAQSTGSIKWGQCKLVYSNDTYESN
GLDSAPTHKYNAFGKRGSIVGGYCTVKTADGDYLTEEMSLAEIKAVEATSKAKNGPWKTF
WEEMARKTIVKRASKYWPKAQRLDNAIHLLNEDEGMHQEPVMPHKSEEDIREDERKRQQE
IMEKAQLLCDEMAQAENMDDLKRYFAEAYRLTSGMKLQQNVQAIYIECKAKLEVASEQTV
>gi|223713595|gb|ACDM01000003.1| GENE    41     47213  -     47521    282    102 aa, chain - ## HITS:1  COG:no KEGG:SFV_0266 NR:ns ## KEGG: SFV_0266 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1     102       1     102     102     181   99.0  6e-45
MILTLNDKREISQIIASFTDEDYERINSEVDRLCKRCDPISEMLRSYKPDEHTKDAIDWL
EDDDCNYQEKAAEWFWDAITERVKAEYAFAIFKRRHIFGEAA
>gi|223713595|gb|ACDM01000003.1| GENE    42     47606  -     47758     74     50 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A0612 NR:ns ## KEGG: SeSA_A0612 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1      50       1      50      50      79  100.0  5e-14
MRNEIAINHQMLRAAQNKAVIARFIGDSKMWLEANKAMKSAINLPWYRRK
>gi|223713595|gb|ACDM01000003.1| GENE    43     47877  -     48389    137    170 aa, chain - ## HITS:1  COG:no KEGG:YE2335 NR:ns ## KEGG: YE2335 # Name: not_defined # Def: hypothetical protein # Organism: Y.enterocolitica # Pathway: not_defined # 10     163       7     169     176     124   43.0  2e-27
MAFIKILELISLSEINNVVKYNPISGEFTWLKSYGARKIGGTAGTITTSGYLRIFINGRH
YAAHRLAWIITFGVEPEGIIDHINGIKTDNRICNLRLATYSQNSMNSKINTLNKSGCKGV
TWKKESRKWAAYGKLNGKKKHLGYFNELEDAKKAYCDFARKHHGEFYRSK
>gi|223713595|gb|ACDM01000003.1| GENE    44     48602  -     49072    -27    156 aa, chain - ## HITS:1  COG:no KEGG:ECO26_3378 NR:ns ## KEGG: ECO26_3378 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     156       1     156     156     298   99.0  6e-80
MTKSWSVPFPESETEHDGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIV
DFKPAPNQWLQEWKQKRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDL
AVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY
>gi|223713595|gb|ACDM01000003.1| GENE    45     49081  -     49296    125     71 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2544 NR:ns ## KEGG: ECS88_2544 # Name: N # Def: regulatory protein N # Organism: E.coli_S88 # Pathway: not_defined # 1      71      60     130     130     115   95.0  5e-25
MQEQRLARKIALKLSGCVRADKAASLGSLRCKKAEEVERKQNRIYYRKPRSEMGVTCVGR
QKMKLGSKPLI
>gi|223713595|gb|ACDM01000003.1| GENE    46     49745  -     50113    141    122 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256021954|ref|ZP_05435819.1| ## NR: gi|256021954|ref|ZP_05435819.1| hypothetical protein E4_01160 [Escherichia sp. 4_1_40B] # 1     122       1     122     122     182  100.0  7e-45
MVGTAIASFLGMLAISTIYGLAHAFIAKSLSEKISQAWAHRSARFMILVVIAIQGISAFI
LYGSSLYLLYQGATFTPYTSDYGTLYDGSEDISMAWIVFGLSMAVSVVADIIKVILVLTF
AD
>gi|223713595|gb|ACDM01000003.1| GENE    47     50133  -     50849    252    238 aa, chain - ## HITS:1  COG:YPO1233 KEGG:ns NR:ns ## COG: YPO1233 COG1974 # Protein_GI_number: 16121519 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Yersinia pestis # 4     234       3     235     240     243   51.0  2e-64
MENKKSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRNALNVE
VASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGSW
CEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAIN
GSLVIAKLSDSNEATFKKLIIDGGNKYLKGLNPAWPLVPINGNCKIIGVAIETKLRLV
>gi|223713595|gb|ACDM01000003.1| GENE    48     50956  -     51150    228     64 aa, chain + ## HITS:1  COG:no KEGG:ECL_03587 NR:ns ## KEGG: ECL_03587 # Name: not_defined # Def: Cro protein # Organism: E.cloacae # Pathway: not_defined # 3      62       4      63      65      75   65.0  4e-13
MIRMTLADYAKIHGQAKAASDFGVIQCAISKAILAGRNIMVTVKPDGSVIGEEVRPFPSN
KKNK
>gi|223713595|gb|ACDM01000003.1| GENE    49     51259  -     51537    212     92 aa, chain + ## HITS:1  COG:no KEGG:EC55989_2636 NR:ns ## KEGG: EC55989_2636 # Name: C # Def: transcriptional activator protein C1 (modular protein) # Organism: E.coli_55989 # Pathway: not_defined # 1      92      30     121     121     162   97.0  3e-39
MQLTSTRKKANAITSNILNRIAVRGQRKVADALGINESQISRWKDSFIPKMGMLLAVLEW
GVEDEELAELAKQVARMLTKEKAPKNGEFFEA
>gi|223713595|gb|ACDM01000003.1| GENE    50     51572  -     51718     61     48 aa, chain + ## HITS:1  COG:no KEGG:ECO111_2710 NR:ns ## KEGG: ECO111_2710 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      48       1      48      48      68  100.0  7e-11
MTKQLSPYQDKIHKHILRDRFLSSFKQPGRFRAELEKVKLMQKEKGHE
>gi|223713595|gb|ACDM01000003.1| GENE    51     51711  -     52376    172    221 aa, chain + ## HITS:1  COG:no KEGG:SeSA_A0620 NR:ns ## KEGG: SeSA_A0620 # Name: not_defined # Def: GP59 # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1     216       1     216     286     399   99.0  1e-110
MSNLATVTHLRPSQRPVERRVAEVEDGYTRLANALYEELIGADLTKNQSKVAHAICRKTY
GYGKKMDRISDSQLAQITRLPRQKVNKAKNELIAMKVILREGQQIGPNKNIEEWQIEGCH
YSGDNVTALVTKSVTKTVTALSPKQGHTKETITKEKRNNKNTMSESVRTECEKSPDRHEE
TDKAFEEIFWCAGMRKAGKKNAASAFRTQFREWRKTIGVGC
>gi|223713595|gb|ACDM01000003.1| GENE    52     52527  -     54365    287    612 aa, chain + ## HITS:1  COG:no KEGG:EFER_2034 NR:ns ## KEGG: EFER_2034 # Name: not_defined # Def: DNA transfer protein from phage # Organism: E.fergusonii # Pathway: not_defined # 1     612       2     613     614    1030   97.0  0
MKVTANGKTFTFPDGTSTEDIGTAIDEYFAGQAVQQQTVNQANNAPTREEPSLMQQAGDW
LTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPY
AQAGETIGGYLVPGVGTAGSMAIGSLAEAANQKGDFAQNAAKNAGVNLATQGVLSAAAKG
IGRGITAIKGDIAPEVAKKIATSESMGVTPMTSDVIPPKNAFTRGLTQDAEGALLGTGSK
RAEQYATRSKLVSNYFDRFGEYNPDDVVKSLTTTLRGRKDAAGAVINDVTNKMGNAAVDT
TNTMNALNTAIARQERLGTSANQSLLTSLRNLREELANPATDLDVTFDLLRQHRTAFRSN
VQGDAMVFPNQAKAATNMVENAMSKDLRNAVAKNLGASDAAKYLKANSDYANVYNKVLNK
NIANKLNKASSEASPELINTVVLSRKPSDVKRIWSALDDKGKDAMRAAYVSKIAEKAGDS
PAKFITEVNKLKSQSGGEIYNTIFSGKHMKELDALHEVLQQTARSDTANVVTQTGQSQAN
RIRTIGATATLGVSMGLEAGFGAMMRLYESKAARNALLRLANTKAGTPAYERALSNAANA
IRPLLATEATQQ
>gi|223713595|gb|ACDM01000003.1| GENE    53     54390  -     54779    150    129 aa, chain - ## HITS:1  COG:no KEGG:ECO111_2667 NR:ns ## KEGG: ECO111_2667 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     129       1     129     129     221   89.0  7e-57
MKLIIAMAFLVFSFSVSAECWVVGDMHGISYSERNNFQPEEDGFSGTFIIKTNGEDASIT
YSGTDAGGMAYKALSKNSIIGIGANGETQRVIDSWVIHPNGTVLMSKTISGYGNMDSTKA
FVGKVKRKC
>gi|223713595|gb|ACDM01000003.1| GENE    54     55127  -     55381    104     84 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C2639 NR:ns ## KEGG: UTI89_C2639 # Name: mnt # Def: regulatory protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      80       1      80      82     124   91.0  1e-27
MARDDPHFNFRMPLEVREKLKLRAEANGRSMNSELLQIVQDALSKPSPITGYRDEAERLA
DQQAEQFKAIVFETLKKIYEKDLK
>gi|223713595|gb|ACDM01000003.1| GENE    55     55409  -     55633    132     74 aa, chain + ## HITS:1  COG:no KEGG:ECO111_2664 NR:ns ## KEGG: ECO111_2664 # Name: not_defined # Def: putative transcriptional repressor # Organism: E.coli_O111_H- # Pathway: not_defined # 22      74       1      53      53      99  100.0  3e-20
MIEALYYILNRSTVDLYCEVNMKGMSKMPQFNLRWPKEVLDLVRKVAEENGRSVNSEIYQ
RVMESFKKEGRIGA
>gi|223713595|gb|ACDM01000003.1| GENE    56     55702  -     56580    565    292 aa, chain + ## HITS:1  COG:Z1818_1 KEGG:ns NR:ns ## COG: Z1818_1 COG3617 # Protein_GI_number: 15801289 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Escherichia coli O157:H7 EDL933 # 1     188       1     188     188     382   98.0  1e-106
MKSIAKAQNDFTIFKFGDSEIRVINKCGEPWFVAKDVCDALDLTNSRKALTALDDDEKGV
TLSYTLGGEQNLSIVSESGMYTLVLRCRDAVNKGSVPHKFRKWVTAEVLPSIRKHGEYVK
GKKTTVEERTPLRDAVNMLVGKKGLRYDDAYNMVHQRFGIDSIDELSIEQIPLAVEYIHR
VVLEGEFIGKQEKKTNELSAKEANSLVWLWDYANRSQALFRELYPALKQIQSNYSGRCYD
YGHEFSYVIGMARDVLINHTRDVDINEPDGPTNLSAWMRLKNKELPPSVHNY
>gi|223713595|gb|ACDM01000003.1| GENE    57     56681  -     59047    555    788 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C2636 NR:ns ## KEGG: UTI89_C2636 # Name: sia # Def: endo-alpha-sialidase # Organism: E.coli_UTI89 # Pathway: not_defined # 1     145       1     158     981     240   78.0  2e-61
MTDITANVIVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNTENQIPVYVENEDGSHVP
VSQPIIINAAGYPVYNGQIAKFVTVQGHSMAVYDAYGTQQFYFPNVLKYDPDQLRTEIFS
DRMLLITPQHYGAKGDGVNDDTVAFIAAANALGDGGKLYIPTGIYNLIGPVNIPPVNMCG
DGQGKTVIVFDNTTSPKDGFVFAAPTKHDVEFGLSHLTIKSKGGNGANAIYTPRGVGLNH
LRPKPTFRFLSFCSETANIDSDEFAQKYGWEWSFNCGDSWQFTIERIDAVGCYQIAKSYN
EQFLDGFIRTAPEEGILSMRVSDITTHNVANFFEIKQKTYFNLTNVDVARSLNGVYDAQD
RVFESNRYAYGESIWTNVIINSQLHPINLDNRFLLIANGLAIHRAGGGYDHGNEWVGIRL
IRPRVCTINGLEISSASGYTTTKKGIIIDGGDANNFINVSFGTLDIGAQIGVTSSIHGAN
QATNFSNISINANVTTLLNIQNARGFNCSQYTASPLYTLANFMVNDDKVNNTFTLTNIDG
KNNYTDNSIYLYNQEASEDTKRWRIDTRTGYTLSTQKDNGAQGNNAIIIRRSGIIVDSIE
LRTKNDSGGYLLHTSPETHFSGLIKPTVDNVNSNGTSAFRWSQVYAGTGSINTSNEELKL
RIEADEKTTESERLAALEIKENIWRFKFKDAVKIKSDGARIHFGVGAQTVGNILRKYGLD
PNNYAFWCYDEWDDIYAPEVLIRSVKNNETGEWYDEEYYTGRQVIIKPAGYQYGIRYEEL
LMFILMFI
>gi|223713595|gb|ACDM01000003.1| GENE    58     59067  -     59738     83    223 aa, chain - ## HITS:1  COG:SA0151 KEGG:ns NR:ns ## COG: SA0151 COG0110 # Protein_GI_number: 15925860 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 36     178      51     189     208     132   46.0  8e-31
MVIDAMLSVQMTPQAKVSFEEQCFFHASGLVVAPINVGAFSYFGANCMLGGFTMGRFCSV
APGVKIGLGEHETGYFSTHPFFFGSKNGFKIPDGIGMQRDLSQQKHGIPRIGHDVWIGAN
AVIRRGITIGTGAVIAAGAIVTKNVEPYSIVGGVSAKHLGYRFEESIIKELLDSQWWEYD
LSSFIGIDTRTPTTFLEQFNAVKDKKKASYKRFTILPSGEIVE
>gi|223713595|gb|ACDM01000003.1| GENE    59     59931  -     61088    369    385 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 48     385      60     405     406 146  28 6e-34
MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL
QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYANELAKMF
DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN
PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS
MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK
KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY
NHAQYLDKRREMMQWWADWIDEKVE
>gi|223713595|gb|ACDM01000003.1| GENE    60     61400  -     62332    924    310 aa, chain - ## HITS:1  COG:yfdC KEGG:ns NR:ns ## COG: yfdC COG2116 # Protein_GI_number: 16130280 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1     310       1     310     310     593  100.0  1e-169
MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALL
WSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTA
VLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVM
KNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILY
LVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAE
NIKKNYKNPA
>gi|223713595|gb|ACDM01000003.1| GENE    61     62626  -     63381    915    251 aa, chain + ## HITS:1  COG:ECs3229 KEGG:ns NR:ns ## COG: ECs3229 COG2853 # Protein_GI_number: 15832483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Escherichia coli O157:H7 # 1     251       1     251     251     514  100.0  1e-146
MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR
DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM
ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADGLYPVLSWLTWPM
SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA
IQDDLKDIDSE
>gi|223713595|gb|ACDM01000003.1| GENE    62     63563  -     64621    336    352 aa, chain - ## HITS:1  COG:no KEGG:JW2342 NR:ns ## KEGG: JW2342 # Name: yfdF # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     352       1     352     352     651   99.0  0
MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGISTCIKHLLELIKNAIRV
NDDPYRFNINNPSVTYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEK
THDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKK
GDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSENARSASAWFESSKA
IMAESFATGSDHQVVNELNGERLREPNDVFKRYGRAIRYDFQVDDAKYKCDHLKEIVSTL
VGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAEYQNEINQPSAPGVNFDDI
>gi|223713595|gb|ACDM01000003.1| GENE    63     64987  -     66327   1259    446 aa, chain - ## HITS:1  COG:fadL KEGG:ns NR:ns ## COG: fadL COG2067 # Protein_GI_number: 16130277 # Func_class: I Lipid transport and metabolism # Function: Long-chain fatty acid transport protein # Organism: Escherichia coli K12 # 1     446       3     448     448     836  100.0  0
MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPA
LITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWG
ASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKI
ERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILY
ELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMW
EVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYY
DDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSV
KINEGPYQFESEGKAWLFGTNFNYAF
>gi|223713595|gb|ACDM01000003.1| GENE    64     66699  -     66983    369     94 aa, chain + ## HITS:1  COG:yfcZ KEGG:ns NR:ns ## COG: yfcZ COG3691 # Protein_GI_number: 16130276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      94       9     102     102     161  100.0  2e-40
MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCK
ITPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR
>gi|223713595|gb|ACDM01000003.1| GENE    65     67164  -     68474   1418    436 aa, chain + ## HITS:1  COG:yfcY KEGG:ns NR:ns ## COG: yfcY COG0183 # Protein_GI_number: 16130275 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1     436       1     436     436     793  100.0  0
MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGELLARSEIPAEVIE
QLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRA
GIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYST
GLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVE
DNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGY
LRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSE
RFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVT
ACAAGGLGAAMVLEAE
>gi|223713595|gb|ACDM01000003.1| GENE    66     68474  -     70618   1669    714 aa, chain + ## HITS:1  COG:yfcX_2 KEGG:ns NR:ns ## COG: yfcX_2 COG1250 # Protein_GI_number: 16130274 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 308     714       1     407     407     792  100.0  0
MEMTSAFTLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSA
KPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQVIAAIHGACLGGGLELA
LACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAL
KLGLVDDVVPHSILLEAAVELAKKERPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKT
QGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVTKDPG
SDAPPAPLNSVGILGGGLMGGGIAYVTACKAGIPVRIKDINPQGINHALKYSWDQLEGKV
RRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIF
ASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQ
GKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVG
IDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPA
IYPLIGTQGQGRISAPQVAERCVMLMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLG
GPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARGESFWKTTATDLQ
>gi|223713595|gb|ACDM01000003.1| GENE    67     70836  -     71306    468    156 aa, chain + ## HITS:1  COG:sixA KEGG:ns NR:ns ## COG: sixA COG2062 # Protein_GI_number: 16130273 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Escherichia coli K12 # 1     156       6     161     161     303  100.0  9e-83
MRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGD
CLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAELCPGETP
PMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKAI
>gi|223713595|gb|ACDM01000003.1| GENE    68     71987  -     72550    677    187 aa, chain + ## HITS:1  COG:yfcV KEGG:ns NR:ns ## COG: yfcV COG3539 # Protein_GI_number: 16130272 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     187       1     187     187     299  100.0  2e-81
MSKFVKTAIAAAMVMGAFTSTATIAAGNNGTARFYGTIEDSVCSIVPDDHKLEVDMGDIG
AEKLKNNGTTTPKNFQIRLQDCVFDTQETMTTTFTGTVSSANSGNYYTIFNTDTGAAFNN
VSLAIGDSLGTSYKSGMGIDQKIVKDTATNKGKAKQTLNFKAWLVGAADAPDLGNFEANT
TFQITYL
>gi|223713595|gb|ACDM01000003.1| GENE    69     72632  -     75277   2509    881 aa, chain + ## HITS:1  COG:yfcUm KEGG:ns NR:ns ## COG: yfcUm COG3188 # Protein_GI_number: 16132272 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     881       1     881     881    1737   99.0  0
MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE
PGKYNLQVQLNKQPLAEEYDIYWYAGEDDVSKSYACLTPELVAQFGLKEDVAKNLQWSHD
GKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTWPDWDPPSRWDDGISGIIADYSITA
QTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNDDDDEFGGDDTQKKWE
WSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGV
AHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDISTASM
PYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDENYQSAAL
GVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYR
FSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQ
TNYNIMLSHYFNMGSIRNMSVSLTGYRYEYDNRADKGMYISLSMPWGDNSTVSYNGNYGS
GTDSSQVGYFSRVDDATHYQLNIGTSDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAG
LSLQGGATLTTHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVN
NYYRNQAYIDLNKLPENAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLQDGSHPP
FGAEVKNDNEQTVGLVDDDGSVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLL
LPCQHKGNVAPVVPDDIKPVIQEQTQQVTPTDPPVSVSANQ
>gi|223713595|gb|ACDM01000003.1| GENE    70     75297  -     76049    604    250 aa, chain + ## HITS:1  COG:yfcS KEGG:ns NR:ns ## COG: yfcS COG3121 # Protein_GI_number: 16130271 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     250       1     250     250     442  100.0  1e-124
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYL
AQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREI
PPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVI
ISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSC
QVDEEQSRKG
>gi|223713595|gb|ACDM01000003.1| GENE    71     76223  -     76561    217    112 aa, chain + ## HITS:1  COG:yfcR KEGG:ns NR:ns ## COG: yfcR COG3539 # Protein_GI_number: 16130270 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     112      59     170     170     206  100.0  1e-53
MIADNVDGTNYRQDAKYTLNCTNSLANDLRMQLKGNTSTINGETVLSTNITGLGIRIENS
ADNSLFAVGENSWTPFNINNQPQLKAVPVKASGAQLAAGEFNASLTMVVDYQ
>gi|223713595|gb|ACDM01000003.1| GENE    72     76558  -     77046    253    162 aa, chain + ## HITS:1  COG:yfcQ KEGG:ns NR:ns ## COG: yfcQ COG3539 # Protein_GI_number: 16130269 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     162       1     162     162     322  100.0  2e-88
MRKTFLTLLCVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYG
RKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTP
LAINATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRVDYQ
>gi|223713595|gb|ACDM01000003.1| GENE    73     77043  -     77582    460    179 aa, chain + ## HITS:1  COG:yfcP KEGG:ns NR:ns ## COG: yfcP COG3539 # Protein_GI_number: 16130268 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     179       1     179     179     335  100.0  2e-92
MNKSMIQSGGYVLLAGLILAMSSTLFAADNNLHFSGNLLSKSCALVVDGQYLAEVRFPTV
SRQDLNVAGQSARVPVVFKLKDCKGPAGYNVKVTLTGVEDSEQPGFLALDTSSTAQGVGI
GMEKTDGMQVAINNTNGATFALTNGNNDINFRAWLQAKSGRDVTIGEFTASLTATFEYI
>gi|223713595|gb|ACDM01000003.1| GENE    74     77584  -     78405    141    273 aa, chain + ## HITS:1  COG:no KEGG:JW2329 NR:ns ## KEGG: JW2329 # Name: yfcO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     273       1     273     273     556  100.0  1e-157
MKILRWLFALVMLIATTEAMAAGHSVDVYYGYNGDSRNIATFNLKIMMPSAVYVGEYKSS
QWLMTGEILQNVSWSGPPPAPSVKLIGYHQNINKASCPGLPSGWNCGYYTFEVIVSAEIE
SYFSCPWLVIMNDSEASPGGVTYQGPDSHDTICPSVSVQPYDVSWNENYVSKSKLLTLQS
TGGVVEKTLSTYLMKDGKLCDSTQMNETGGYCRWVAQMITFTASGCDKAEVSVTPNRHPI
TDKQLHDMVVRVDTSSMQPIDSTCRFQYILNEL
>gi|223713595|gb|ACDM01000003.1| GENE    75     78476  -     79027    613    183 aa, chain - ## HITS:1  COG:yfcN KEGG:ns NR:ns ## COG: yfcN COG2840 # Protein_GI_number: 16130266 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     183       1     183     183     349  100.0  2e-96
MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPVKRLIQEQADASHYFSD
EFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACR
REHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWLPP
ELP
>gi|223713595|gb|ACDM01000003.1| GENE    76     79193  -     80125   1634    310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr. W3110] # 1     310       1     310     310 634  99 1e-180
MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIP
EDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGEL
INNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHG
LIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKL
TRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIA
AREHFAIYKD
>gi|223713595|gb|ACDM01000003.1| GENE    77     80160  -     81245   1160    361 aa, chain + ## HITS:1  COG:aroC KEGG:ns NR:ns ## COG: aroC COG0082 # Protein_GI_number: 16130264 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Escherichia coli K12 # 1     361       1     361     361     696  100.0  0
MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR
EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY
RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC
PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV
KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV
PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR
W
>gi|223713595|gb|ACDM01000003.1| GENE    78     81249  -     82073    500    274 aa, chain + ## HITS:1  COG:mepA KEGG:ns NR:ns ## COG: mepA COG3770 # Protein_GI_number: 16130263 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein endopeptidase # Organism: Escherichia coli K12 # 1     274       1     274     274     521  100.0  1e-148
MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGCIVGADTLPIQSEHYQV
MRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPAGGRFNGGHASHQTGLDVD
IFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEIFSLIKLAAQDKDVTRIFVNP
AIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLPPSGDGCGAELQ
SWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVI
>gi|223713595|gb|ACDM01000003.1| GENE    79     82073  -     82882    884    269 aa, chain + ## HITS:1  COG:ECs3211 KEGG:ns NR:ns ## COG: ECs3211 COG0730 # Protein_GI_number: 15832465 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1     269       1     269     269     450  100.0  1e-126
METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALMAAGMSPANALATNKLQ
ACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQYVQADVLRQILPILVICI
GLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFGPAAGSFYALAFVTLCGFNLA
KATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARMGSRLVLSKGQKLIRP
MIVIVSAVMSAKLLYDSHGQEILHWLGMN
>gi|223713595|gb|ACDM01000003.1| GENE    80     82882  -     83430    575    182 aa, chain + ## HITS:1  COG:yfcM KEGG:ns NR:ns ## COG: yfcM COG3101 # Protein_GI_number: 16130261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     182       1     182     182     379  100.0  1e-105
MNSTHHYEQLIEIFNSCFADDFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHE
ISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQALDWLFCVAAGYPFNVSC
DNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQFPWPEA
LN
>gi|223713595|gb|ACDM01000003.1| GENE    81     83464  -     83742    373     92 aa, chain + ## HITS:1  COG:no KEGG:ECB_02250 NR:ns ## KEGG: ECB_02250 # Name: yfcL # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      92       1      92      92     154  100.0  1e-36
MIAEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQS
LEKAIGAGELSPRDQALVTDMWENLFQQASQQ
>gi|223713595|gb|ACDM01000003.1| GENE    82     83863  -     85869   1352    668 aa, chain - ## HITS:1  COG:yfcK_2 KEGG:ns NR:ns ## COG: yfcK_2 COG0665 # Protein_GI_number: 16130259 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 256     668       1     413     413     830   99.0  0
MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLF
VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPEL
APWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF
APAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREML
CGVMEQTLPLPCSAPWFNRTGSSKREAAISGGGIASALLSLALLRRGWQVTLYCADEAPA
LGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKS
QHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ
QQGLQIYYQYQLQNLSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVA
GQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQ
RLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEA
VSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLL
KGKAVKAG
>gi|223713595|gb|ACDM01000003.1| GENE    83     86028  -     87248   1394    406 aa, chain + ## HITS:1  COG:fabB KEGG:ns NR:ns ## COG: fabB COG0304 # Protein_GI_number: 16130258 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli K12 # 1     406       1     406     406     770  100.0  0
MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLI
DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM
RGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLG
KQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV
EELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGT
STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN
IEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLKD
>gi|223713595|gb|ACDM01000003.1| GENE    84     87597  -     88691    986    364 aa, chain + ## HITS:1  COG:yfcJ KEGG:ns NR:ns ## COG: yfcJ COG0477 # Protein_GI_number: 16130257 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     364      29     392     392     542   99.0  1e-154
MTVGLPLPVIPLFVHHELGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM
LACGLAGGALLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGIVGPKHSGK
VMSWNGMAIYGALAVGAPLGLLIHSHYGFAALAITTMVLPVLAWACNGTVRKVPALAGER
PSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVM
FGWMPDRFGGVKVAIVSLLVETVGLLLLWQAPGEWVALAGAALTGAGCSLIFPALGVEVV
KRVPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILS
FRRG
>gi|223713595|gb|ACDM01000003.1| GENE    85     88688  -     89683    817    331 aa, chain - ## HITS:1  COG:no KEGG:B21_02206 NR:ns ## KEGG: B21_02206 # Name: flk # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     331       1     331     331     518  100.0  1e-145
MIQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIR
HDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYI
RHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLA
AATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLK
QPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFP
PMMDTLQNMATRPALWILLVAIILMLVWLVR
>gi|223713595|gb|ACDM01000003.1| GENE    86     89782  -     90918   1197    378 aa, chain + ## HITS:1  COG:pdxB KEGG:ns NR:ns ## COG: pdxB COG0111 # Protein_GI_number: 16130255 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1     378       1     378     378     743   99.0  0
MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVRSVTKVNESLLAGKPIK
FVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLYDRTVG
IVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQRADILTFHTPLFKD
GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL
NVELLKKVDIGTPHIAGYTLEGKARGTTQVFEAYSKFIGHEQHVALDTLLPAPEFGRITL
HGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPGEFDKLRKNYLERREWSSLYVICDDAS
AASLLCKLGFNAVHHPAR
>gi|223713595|gb|ACDM01000003.1| GENE    87     90984  -     91997   1197    337 aa, chain + ## HITS:1  COG:usg KEGG:ns NR:ns ## COG: usg COG0136 # Protein_GI_number: 16130254 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Escherichia coli K12 # 1     337       1     337     337     643  100.0  0
MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAGEQLRFGGKTITVQDAA
EFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFALEPDVPLVVPEVNPFVLTD
YRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLISASAQGKKAVDALAGQSAKLL
NGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVDEVRKILQDEGLMISASVVQAPV
FYGHAQMVNFEALRPLAAEEARDAFVQGEDIVLSEENEFPTQVGDASGTPHLSVGCVRND
YGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQEYLY
>gi|223713595|gb|ACDM01000003.1| GENE    88     91997  -     92809    571    270 aa, chain + ## HITS:1  COG:truA KEGG:ns NR:ns ## COG: truA COG0101 # Protein_GI_number: 16130253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Escherichia coli K12 # 1     270       1     270     270     556   99.0  1e-158
MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD
AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKAVPDDFHARFSATARRYRY
IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH
INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA
KAEGLYLVAVDYPDRYDLPKPPMGPLFLAD
>gi|223713595|gb|ACDM01000003.1| GENE    89     92892  -     93551    558    219 aa, chain + ## HITS:1  COG:STM2367 KEGG:ns NR:ns ## COG: STM2367 COG0586 # Protein_GI_number: 16765694 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1     219       1     219     219     388   96.0  1e-108
MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA
LASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQF
YEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT
IPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAAK
>gi|223713595|gb|ACDM01000003.1| GENE    90     93707  -     94621   1029    304 aa, chain + ## HITS:1  COG:ECs3200 KEGG:ns NR:ns ## COG: ECs3200 COG0777 # Protein_GI_number: 15832454 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Escherichia coli O157:H7 # 1     304       1     304     304     584  100.0  1e-167
MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNR
LHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPV
VAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKT
SAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK
LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNPEAPREGVVVPPVPDQ
EPEA
>gi|223713595|gb|ACDM01000003.1| GENE    91     94691  -     95959   1198    422 aa, chain + ## HITS:1  COG:folC KEGG:ns NR:ns ## COG: folC COG0285 # Protein_GI_number: 16130250 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Escherichia coli K12 # 1     422       1     422     422     815  100.0  0
MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSLVAARLGVLKPAPFVFTVAGTNGK
GTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDIS
LTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPD
RESIGREKAGIFRSEKPAIVGEPEMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSD
AHGTLENLPLPLVPQPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPRVI
FDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGP
RGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGSFHTVAHVMEVIDARRSG
GK
>gi|223713595|gb|ACDM01000003.1| GENE    92     95949  -     96611    676    220 aa, chain + ## HITS:1  COG:ZdedD KEGG:ns NR:ns ## COG: ZdedD COG3147 # Protein_GI_number: 15802861 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1     220       1     220     220     297   99.0  1e-80
MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKAGDRDEPDMMPAAT
QALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPAPVAPPKPKPVEPPKPKVE
APPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEIVGKLRGAGYRVYTSPSTPVQ
GKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYTPN
>gi|223713595|gb|ACDM01000003.1| GENE    93     96870  -     97358    420    162 aa, chain + ## HITS:1  COG:cvpA KEGG:ns NR:ns ## COG: cvpA COG1286 # Protein_GI_number: 16130248 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Escherichia coli K12 # 1     162       1     162     162     268   99.0  4e-72
MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELV
RNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFL
DSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLPRA
>gi|223713595|gb|ACDM01000003.1| GENE    94     97395  -     98912   1611    505 aa, chain + ## HITS:1  COG:purF KEGG:ns NR:ns ## COG: purF COG0034 # Protein_GI_number: 16130247 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Escherichia coli K12 # 1     505       1     505     505    1027  100.0  0
MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARH
MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKR
RHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMV
AFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEGQLF
TRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVI
PIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRD
KNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATELIAHG
REVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGVYVTKDVDQGYLDFLD
TLRNDDAKAVQRQNEVENLEMHNEG
>gi|223713595|gb|ACDM01000003.1| GENE    95     99007  -     99576    484    189 aa, chain + ## HITS:1  COG:ECs3195 KEGG:ns NR:ns ## COG: ECs3195 COG0163 # Protein_GI_number: 15832449 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Escherichia coli O157:H7 # 1     189       1     189     189     356  100.0  2e-98
MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTLSLETDFSLREVQALAD
VTHDARDIAASISSGSFQTLGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVL
CVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLDDVINQTVNRVLDQFAITLPE
DLFARWQGA
>gi|223713595|gb|ACDM01000003.1| GENE    96     99842  -    100624    950    260 aa, chain + ## HITS:1  COG:argT KEGG:ns NR:ns ## COG: argT COG0834 # Protein_GI_number: 16130245 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1     260       1     260     260     467  100.0  1e-131
MKKSILALSLLVGLSTAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMC
KRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAK
GSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVVAYANQDLVYSDLAAGRLDAA
LQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELR
QDGTYDKMAKKYFDFNVYGD
>gi|223713595|gb|ACDM01000003.1| GENE    97    100845  -    101627    925    260 aa, chain + ## HITS:1  COG:ECs3193 KEGG:ns NR:ns ## COG: ECs3193 COG0834 # Protein_GI_number: 15832447 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 24     260      24     260     260     464  100.0  1e-131
MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELC
KRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAK
NSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAA
FQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMR
ADGTYEKLAKKYFDFDVYGG
>gi|223713595|gb|ACDM01000003.1| GENE    98    101717  -    102403    742    228 aa, chain + ## HITS:1  COG:hisQ KEGG:ns NR:ns ## COG: hisQ COG4215 # Protein_GI_number: 16130243 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Escherichia coli K12 # 1     228       1     228     228     395  100.0  1e-110
MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRLSGLIFEGYTTLIRGVP
DLVLMLLIFYGLQIALNTVTEAMGVGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVP
KGHIEAATAFGFTRGQVFRRIMFPSMMRYALPGIGNNWQVILKSTALVSLLGLEDVVKAT
QLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERRYSVGVKRADL
>gi|223713595|gb|ACDM01000003.1| GENE    99    102400  -    103116    597    238 aa, chain + ## HITS:1  COG:ECs3191 KEGG:ns NR:ns ## COG: ECs3191 COG4160 # Protein_GI_number: 15832445 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Escherichia coli O157:H7 # 1     238       1     238     238     434  100.0  1e-122
MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFLAIGRVSSNKYIQFPIW
LFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGLNCTVLALTLNTCAYTTEI
FAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTA
TVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLISLFRRAEKRWLQHVKPSSTH
>gi|223713595|gb|ACDM01000003.1| GENE   100    103124  -    103897    256    257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 20     232      20     221     223 103  34 8e-21
MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG
SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT
SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLF
GNPQSPRLQRFLKGSLK
>gi|223713595|gb|ACDM01000003.1| GENE   101    104094  -    104984    467    296 aa, chain + ## HITS:1  COG:yfcI KEGG:ns NR:ns ## COG: yfcI COG5464 # Protein_GI_number: 16130240 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     296       1     296     296     584  100.0  1e-167
MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTTLKLEPNSFIDEDLRQY
YSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAAMQNHLDAGYKELPLVLPM
LFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDITVVPDDEIMQHRKMALLELIQ
KHIRQRDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQTGDAQRFRAFIGEIAERAPQEK
EKLMTIADRLREEGAMQGKHEEALRIAQEMLDRGLDRELVMMVTRLSPDDLIAQSH
>gi|223713595|gb|ACDM01000003.1| GENE   102    105032  -    105925    797    297 aa, chain - ## HITS:1  COG:yfcH KEGG:ns NR:ns ## COG: yfcH COG1090 # Protein_GI_number: 16130239 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Escherichia coli K12 # 1     297       1     297     297     607  100.0  1e-174
MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPRVTLWQGLADQSNLNGV
DAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINASDTPPSVLISGSATGYYGD
LGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCLLRTGVVLAPDGGILGKMLPP
FRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDNELRGPFNMVSPYPVRNEQFAHALGHA
LHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRLEEAGFAFRWYDLEEALADVVR
>gi|223713595|gb|ACDM01000003.1| GENE   103    105946  -    106308    422    120 aa, chain - ## HITS:1  COG:ECs3187 KEGG:ns NR:ns ## COG: ECs3187 COG1539 # Protein_GI_number: 15832441 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Escherichia coli O157:H7 # 1     120       1     120     120     211  100.0  2e-55
MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTV
TKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDKLHALRYADSVSMTLSWQR
>gi|223713595|gb|ACDM01000003.1| GENE   104    106365  -    107012    589    215 aa, chain - ## HITS:1  COG:yfcG KEGG:ns NR:ns ## COG: yfcG COG0625 # Protein_GI_number: 16130237 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1     215       1     215     215     442  100.0  1e-124
MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSP
ADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNH
AAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDL
AMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS
>gi|223713595|gb|ACDM01000003.1| GENE   105    107148  -    107792    486    214 aa, chain + ## HITS:1  COG:yfcF KEGG:ns NR:ns ## COG: yfcF COG0625 # Protein_GI_number: 16130236 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1     214       1     214     214     420  100.0  1e-117
MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVP
LLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREER
PTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVL
HGDEVPERLVDYATFQWQRASVQRFIALSAKQSG
>gi|223713595|gb|ACDM01000003.1| GENE   106    107848  -    108399    551    183 aa, chain + ## HITS:1  COG:ECs3184 KEGG:ns NR:ns ## COG: ECs3184 COG0622 # Protein_GI_number: 15832438 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Escherichia coli O157:H7 # 1     183       2     184     184     362  100.0  1e-100
MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVAERLN
EVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQND
VLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVA
INP
>gi|223713595|gb|ACDM01000003.1| GENE   107    108457  -    108999    655    180 aa, chain + ## HITS:1  COG:ECs3183 KEGG:ns NR:ns ## COG: ECs3183 COG0494 # Protein_GI_number: 15832437 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     180       1     180     180     329  100.0  1e-90
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETK
DFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALF
SCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
>gi|223713595|gb|ACDM01000003.1| GENE   108    109032  -    110552   1639    506 aa, chain - ## HITS:1  COG:yfcC KEGG:ns NR:ns ## COG: yfcC COG1288 # Protein_GI_number: 16130233 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     506       8     513     513     921  100.0  0
MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVV
DPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIG
GAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAP
LMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIAT
LIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWV
IWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLV
GFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSG
QAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLK
VGATLLGLLFIMSSVVVIGAQLMGYH
>gi|223713595|gb|ACDM01000003.1| GENE   109    110742  -    112886   2418    714 aa, chain - ## HITS:1  COG:pta_1 KEGG:ns NR:ns ## COG: pta_1 COG0857 # Protein_GI_number: 16130232 # Func_class: R General function prediction only # Function: BioD-like N-terminal domain of phosphotransacetylase # Organism: Escherichia coli K12 # 1     391       1     391     391     752  100.0  0
MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRTGGDAPDQTTTIVRAN
SSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDAEVVLVEGLVPTRKHQFAQ
SLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFGGAKNTNITGVIVNKLNAPVD
EQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHLN
ATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEI
GALLLTGGYEMDARISKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEK
VQEYVANYINADWIESLTATSERSRRLSPPAFRYQLTELARKAGKRIVLPEGDEPRTVKA
AAICAERGIATCVLLGNPAEINRVAASQGVELGAGIEIVDPEVVRESYVGRLVELRKNKG
MTETVAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSV
FFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGS
DVEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTG
NTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ
>gi|223713595|gb|ACDM01000003.1| GENE   110    112961  -    114163   1285    400 aa, chain - ## HITS:1  COG:ECs3180 KEGG:ns NR:ns ## COG: ECs3180 COG0282 # Protein_GI_number: 15832434 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Escherichia coli O157:H7 # 1     400       1     400     400     803  100.0  0
MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARIKWKMDGNKQEAALGAG
AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDESVIQGIKDAASFA
PLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEESYLYALPYNLYKEHGIRRYG
AHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM
GTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGLLGLTEVTSDCRYVEDNYATKEDAK
RAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER
NLAARFGKSGFINKEGTRPAVVIPTNEELVIAQDASRLTA
>gi|223713595|gb|ACDM01000003.1| GENE   111    114501  -    114956    381    151 aa, chain + ## HITS:1  COG:yfbV KEGG:ns NR:ns ## COG: yfbV COG3092 # Protein_GI_number: 16130230 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     151       1     151     151     296  100.0  7e-81
MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLC
WQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVL
APVEGKPDYQALADTLKRAFKQLDKTFLDDL
>gi|223713595|gb|ACDM01000003.1| GENE   112    115039  -    115533    645    164 aa, chain + ## HITS:1  COG:ECs3178 KEGG:ns NR:ns ## COG: ECs3178 COG3013 # Protein_GI_number: 15832432 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     164       7     170     170     318  100.0  3e-87
MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCR
TIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHF
DAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA
>gi|223713595|gb|ACDM01000003.1| GENE   113    115526  -    116194    538    222 aa, chain + ## HITS:1  COG:yfbT KEGG:ns NR:ns ## COG: yfbT COG0637 # Protein_GI_number: 16130228 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1     222       1     222     222     402  100.0  1e-112
MPEEARVRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRH
FMAGKSEADIAAEFTRLEHIEATETEGITALPGAIALLSHLNKAGIPWAIVTSGSMPVAR
ARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAA
GCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQPNGDVIIQ
>gi|223713595|gb|ACDM01000003.1| GENE   114    116281  -    118113   1582    610 aa, chain + ## HITS:1  COG:ECs3176 KEGG:ns NR:ns ## COG: ECs3176 COG0471 # Protein_GI_number: 15832430 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli O157:H7 # 1     610       1     610     610    1085  100.0  0
MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLI
AALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIP
VVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTP
IGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSP
MIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQ
FCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKR
NGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPH
AIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFA
VALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAA
KTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVC
VVMIPMLFPF
>gi|223713595|gb|ACDM01000003.1| GENE   115    118172  -    118771    716    199 aa, chain - ## HITS:1  COG:yfbR KEGG:ns NR:ns ## COG: yfbR COG1896 # Protein_GI_number: 16130226 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1     199       1     199     199     373  100.0  1e-103
MKQSHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAER
IALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLI
DEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFME
IFVPSFHLSLDEISQDSPL
>gi|223713595|gb|ACDM01000003.1| GENE   116    118855  -    120072   1130    405 aa, chain - ## HITS:1  COG:yfbQ KEGG:ns NR:ns ## COG: yfbQ COG0436 # Protein_GI_number: 16130225 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1     405       1     405     405     853  100.0  0
MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPAPFGFDAPDEILVDVIR
NLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGD
EMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNP
TGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSK
TYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRLCANVPAQHAIQTALGGYQSISEFI
TPGGRLYEQRNRAWELINDIPGVSCVKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEK
VLLVQGTAFNWPWPDHFRIVTLPRVDDIELSLSKFARFLSGYHQL
>gi|223713595|gb|ACDM01000003.1| GENE   117    120992  -    121930    870    312 aa, chain + ## HITS:1  COG:lrhA KEGG:ns NR:ns ## COG: lrhA COG0583 # Protein_GI_number: 16130224 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     312       1     312     312     600  100.0  1e-171
MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFAR
HGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLTIGASDESADTILPFLLNR
VSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSAFKALNLRTSPTHWYCAAEYI
LQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPV
EMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPMSAPE
GDDSLLIERDIE
>gi|223713595|gb|ACDM01000003.1| GENE   118    122567  -    123004    500    145 aa, chain + ## HITS:1  COG:ECs3172 KEGG:ns NR:ns ## COG: ECs3172 COG0838 # Protein_GI_number: 15832426 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 3 (chain A) # Organism: Escherichia coli O157:H7 # 1     145       3     147     147     266  100.0  9e-72
MSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARL
RLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGA
LDWTPARSRRERMNPETNSIANRQR
>gi|223713595|gb|ACDM01000003.1| GENE   119    123020  -    123682    727    220 aa, chain + ## HITS:1  COG:ECs3171 KEGG:ns NR:ns ## COG: ECs3171 COG0377 # Protein_GI_number: 15832425 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 1     220       1     220     220     457  100.0  1e-129
MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFG
LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP
KWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER
RPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI
>gi|223713595|gb|ACDM01000003.1| GENE   120    123788  -    125578   2218    596 aa, chain + ## HITS:1  COG:nuoC_2 KEGG:ns NR:ns ## COG: nuoC_2 COG0649 # Protein_GI_number: 16130221 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Escherichia coli K12 # 198     596       1     399     399     845  100.0  0
MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFL
KKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHV
PTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFE
LTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVD
CVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVN
VIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFR
IGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGT
TGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQC
LNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGIN
SYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR
>gi|223713595|gb|ACDM01000003.1| GENE   121    125581  -    126081    467    166 aa, chain + ## HITS:1  COG:nuoE KEGG:ns NR:ns ## COG: nuoE COG1905 # Protein_GI_number: 16130220 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Escherichia coli K12 # 1     166       1     166     166     340  100.0  8e-94
MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD
VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT
TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK
>gi|223713595|gb|ACDM01000003.1| GENE   122    126078  -    127415   1443    445 aa, chain + ## HITS:1  COG:nuoF KEGG:ns NR:ns ## COG: nuoF COG1894 # Protein_GI_number: 16130219 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Escherichia coli K12 # 1     445       1     445     445     922  100.0  0
MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLK
GRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISA
FALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYIC
GEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNIS
KSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFL
TEAHLDLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDG
LPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE
AGIKQPFSNTHLINGIQPNLLKERW
>gi|223713595|gb|ACDM01000003.1| GENE   123    127468  -    130194   2833    908 aa, chain + ## HITS:1  COG:nuoG KEGG:ns NR:ns ## COG: nuoG COG1034 # Protein_GI_number: 16130218 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Escherichia coli K12 # 1     908       3     910     910    1898  100.0  0
MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTR
GRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVM
TGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVY
FGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPG
ERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQ
GAADILRQSKKVIGIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGG
IYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKAREMAAAQKVADWQIAAILN
IGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQ
SKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMG
LGIMGGGSLEEALTELETGRADAVVVLENDLHRHASAIRVNAALAKAPLVMVVDHQRTAI
MENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLL
SREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANIS
VHEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGD
PGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYI
KLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHL
EDLKEAQQ
>gi|223713595|gb|ACDM01000003.1| GENE   124    130191  -    131168   1208    325 aa, chain + ## HITS:1  COG:ECs3166 KEGG:ns NR:ns ## COG: ECs3166 COG1005 # Protein_GI_number: 15832420 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Escherichia coli O157:H7 # 1     325       1     325     325     593  100.0  1e-169
MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQL
VADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFL
MMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIV
NSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG
EYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSF
GWKICLPLTLINLLVTAAVILWQAQ
>gi|223713595|gb|ACDM01000003.1| GENE   125    131183  -    131725    668    180 aa, chain + ## HITS:1  COG:ECs3165 KEGG:ns NR:ns ## COG: ECs3165 COG1143 # Protein_GI_number: 15832419 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli O157:H7 # 1     180       1     180     180     371  100.0  1e-103
MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC
VACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF
EMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDGKDKGEAENEAKPIDVKSLLP
>gi|223713595|gb|ACDM01000003.1| GENE   126    131737  -    132291    825    184 aa, chain + ## HITS:1  COG:ECs3164 KEGG:ns NR:ns ## COG: ECs3164 COG0839 # Protein_GI_number: 15832418 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Escherichia coli O157:H7 # 1     184       1     184     184     317  100.0  7e-87
MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYA
GAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGID
GTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVLSNRKDDSAKRKT
EEHA
>gi|223713595|gb|ACDM01000003.1| GENE   127    132288  -    132590    460    100 aa, chain + ## HITS:1  COG:ECs3163 KEGG:ns NR:ns ## COG: ECs3163 COG0713 # Protein_GI_number: 15832417 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Escherichia coli O157:H7 # 1     100       1     100     100     148  100.0  3e-36
MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQV
MYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG
>gi|223713595|gb|ACDM01000003.1| GENE   128    132587  -    134428   2285    613 aa, chain + ## HITS:1  COG:nuoL KEGG:ns NR:ns ## COG: nuoL COG1009 # Protein_GI_number: 16130213 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Escherichia coli K12 # 1     613       1     613     613    1054  100.0  0
MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTY
SQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYT
NLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVF
LAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA
DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALV
QTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQ
NIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLV
GAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLP
QTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWG
FDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSI
GAVVVLALLMVLR
>gi|223713595|gb|ACDM01000003.1| GENE   129    134592  -    136121   1815    509 aa, chain + ## HITS:1  COG:ECs3161 KEGG:ns NR:ns ## COG: ECs3161 COG1008 # Protein_GI_number: 15832415 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Escherichia coli O157:H7 # 1     509       1     509     509     889  100.0  0
MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGI
PQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNL
MWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQA
SGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPL
HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFY
GAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCG
QLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPV
ITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGF
YPQPILDTSHSAIGNIQQWFVNSVTTTRP
>gi|223713595|gb|ACDM01000003.1| GENE   130    136128  -    137585   1858    485 aa, chain + ## HITS:1  COG:ECs3160 KEGG:ns NR:ns ## COG: ECs3160 COG1007 # Protein_GI_number: 15832414 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Escherichia coli O157:H7 # 61     485       1     425     425     707  100.0  0
MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGA
MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLA
NANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQ
SGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST
FLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGY
SSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLF
SYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAI
GLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRL
AMPLM
>gi|223713595|gb|ACDM01000003.1| GENE   131    137669  -    138517    393    282 aa, chain - ## HITS:1  COG:no KEGG:JW2270 NR:ns ## KEGG: JW2270 # Name: yfbP # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     282       2     283     283     582  100.0  1e-165
MKLIPRSSDISPGIDGICPGPFPPNGFTVLTDAAYGNGDCFGLYWPIGQEHKLPIVCETY
HDEWRIVPAFSSIKKFEEWLEVNDDDPHENGISIEDQDFAANLFRVARKCLSTGRLDDAL
PLLQRATEQLPEVSEYWLALAIQYRRCKKTEAAAQAALNAYLGNWAFGVPDNKVIHLLSQ
AADVPNFQDDPVIQCIKEQGLDLSFGGTKENNNYPLMQMCVDTYFAQRKPLQALTLLHNY
AWIMSSETTAFQERYDFNIDEWRAKFRQLCLEYFGDSRTQFT
>gi|223713595|gb|ACDM01000003.1| GENE   132    138576  -    138998    206    140 aa, chain - ## HITS:1  COG:no KEGG:JW2269 NR:ns ## KEGG: JW2269 # Name: yfbO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     140      19     158     158     270  100.0  9e-72
MTPLERITQLVNINGDVNNPDTPRPLLSLEDFFIDNNIHGSICCNVIPEQSPQAIYHHFL
KIRERNNVSDVLVEITMFDDPDWPFSESILVITTASPEEVQSWFVEEIAPDECWEGWSED
TEHGWVEVPVGMHPVTCWWD
>gi|223713595|gb|ACDM01000003.1| GENE   133    139207  -    139923    251    238 aa, chain + ## HITS:1  COG:no KEGG:JW2268 NR:ns ## KEGG: JW2268 # Name: yfbN # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     238       1     238     238     462  100.0  1e-129
MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN
VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA
DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR
YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL
>gi|223713595|gb|ACDM01000003.1| GENE   134    140196  -    140699    632    167 aa, chain - ## HITS:1  COG:no KEGG:JW2267 NR:ns ## KEGG: JW2267 # Name: yfbM # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     167       1     167     167     323  100.0  2e-87
MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDKRWDFLHFGLTGTSAFD
PAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLESLDRNELRKQFSIKRLNEM
EIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNHALTVIVG
>gi|223713595|gb|ACDM01000003.1| GENE   135    140802  -    141722    474    306 aa, chain - ## HITS:1  COG:yfbL KEGG:ns NR:ns ## COG: yfbL COG2234 # Protein_GI_number: 16130206 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Escherichia coli K12 # 1     306      20     325     325     604   99.0  1e-173
MIIFYQPWVNALPSTPRHASPEQLEKTVRYLTQTVHPRSADNIDNLNRSAEYIKEVFVSS
GARVTSQDVPITGGPYKNIVADYGPADGPLIIIGAHYDSASSYENDQLTYTPGADDNASG
VAGLLELARLLHQQVPKTGVQLVAYASEEPPFFRSDEMGSAVHAASLERPVKLMIALEMI
GYYDSAPGSQNYPYPAMSWLYPDRGDFIAVVGRIQDINAVRQVKAALLSSQDLSVYSMNT
PGFIPGIDFSDHLNYWQHDIPAIMITDTAFYRNKQYHLPGDTADRLNYQKMAQIVDGVIT
LLYNSK
>gi|223713595|gb|ACDM01000003.1| GENE   136    141932  -    143638   1108    568 aa, chain + ## HITS:1  COG:yfbK KEGG:ns NR:ns ## COG: yfbK COG2304 # Protein_GI_number: 16130205 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Escherichia coli K12 # 1     568       8     575     575    1037  100.0  0
MLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEV
QQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLD
VDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELA
PAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKEL
REQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGF
IKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIAD
VGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRV
EHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIR
WKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQ
AKGEDPQGYRAEFIRLIELADGVTDISQ
>gi|223713595|gb|ACDM01000003.1| GENE   137    143709  -    144917    449    402 aa, chain - ## HITS:1  COG:no KEGG:B21_02155 NR:ns ## KEGG: B21_02155 # Name: elaD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     402       2     403     403     765  100.0  0
MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG
KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP
SKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQKIAAN
AKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSLQKIV
NKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPEIIFL
HADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNYADRFKKYSAEEQYEIDFQ
HRLANRNCYLDKYGDANINHYYRNLEIKHSQPKNRASGKRVS
>gi|223713595|gb|ACDM01000003.1| GENE   138    145108  -    146025    619    305 aa, chain - ## HITS:1  COG:elaC KEGG:ns NR:ns ## COG: elaC COG1234 # Protein_GI_number: 16130203 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Escherichia coli K12 # 1     305       7     311     311     627  100.0  1e-179
MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKI
FISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVE
IGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKA
GKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITME
AKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDF
TVFNV
>gi|223713595|gb|ACDM01000003.1| GENE   139    146090  -    146551    471    153 aa, chain + ## HITS:1  COG:elaA KEGG:ns NR:ns ## COG: elaA COG2153 # Protein_GI_number: 16130202 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Escherichia coli K12 # 1     153       1     153     153     315  100.0  2e-86
MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELV
AYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLETCTHHWPDKPVYLGAQAHL
QNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA
>gi|223713595|gb|ACDM01000003.1| GENE   140    146606  -    146911    527    101 aa, chain + ## HITS:1  COG:ECs3154 KEGG:ns NR:ns ## COG: ECs3154 COG4575 # Protein_GI_number: 15832408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      84       1      84     101     146  100.0  8e-36
MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS
YYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR
>gi|223713595|gb|ACDM01000003.1| GENE   141    146990  -    148132    904    380 aa, chain + ## HITS:1  COG:menF KEGG:ns NR:ns ## COG: menF COG1169 # Protein_GI_number: 16130200 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Escherichia coli K12 # 76     380       1     305     356     595   99.0  1e-170
MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWLASQQTYPQFYWQQRNG
DEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDPSQGNLLLPRLEWRRCGGK
ATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQLIELAT
KTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGSSPE
RLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDICQRLQADT
QTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRDLARQFIARH
EPFTREWYAGSAGYLSLQQS
>gi|223713595|gb|ACDM01000003.1| GENE   142    148545  -    150044   1552    499 aa, chain + ## HITS:1  COG:menD KEGG:ns NR:ns ## COG: menD COG1165 # Protein_GI_number: 16130199 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Escherichia coli K12 # 1     499      58     556     556     994   99.0  0
MGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGAN
QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGE
MDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKV
ALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQW
QASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAM
QAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASG
IDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSL
LPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVV
NDTDGAQTLQQLLAQVSHL
>gi|223713595|gb|ACDM01000003.1| GENE   143    150041  -    150799    602    252 aa, chain + ## HITS:1  COG:yfbB KEGG:ns NR:ns ## COG: yfbB COG0596 # Protein_GI_number: 16130198 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1     252       1     252     252     514  100.0  1e-146
MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLYVDLPGHGGSAAISVDG
FDDVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAGLCGVIVEGGHPGLQNAEQ
RAERQRSDRQWVQRFLTEPLTAVFADWYQQPVFASLNDDQRRELVALRSNNNGATLAAML
EATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAAELAADCHVIPRAGHNAHRENPA
GVIASLAQILRF
>gi|223713595|gb|ACDM01000003.1| GENE   144    150814  -    151671    959    285 aa, chain + ## HITS:1  COG:menB KEGG:ns NR:ns ## COG: menB COG0447 # Protein_GI_number: 16130197 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Escherichia coli K12 # 1     285       1     285     285     602  100.0  1e-172
MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQAL
ADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPK
PVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKA
REIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADC
DGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP
>gi|223713595|gb|ACDM01000003.1| GENE   145    151671  -    152633   1100    320 aa, chain + ## HITS:1  COG:menC KEGG:ns NR:ns ## COG: menC COG1441 # Protein_GI_number: 16130196 # Func_class: H Coenzyme transport and metabolism # Function: O-succinylbenzoate synthase # Organism: Escherichia coli K12 # 1     320       1     320     320     624  100.0  1e-179
MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQ
SVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRAAPLCNGDPDDLILK
LADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNP
DYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLTG
SLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV
RRWPGSTLPVVEVDALERLL
>gi|223713595|gb|ACDM01000003.1| GENE   146    152630  -    153985   1142    451 aa, chain + ## HITS:1  COG:menE KEGG:ns NR:ns ## COG: menE COG0318 # Protein_GI_number: 16130195 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 1     451       1     451     451     863  100.0  0
MIFSDWPWRHWRQVRGETIALRLNDEQLNWRELCARVDELASGFAVQGVVEGSGVMLRAW
NTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHI
QLVEGAHAATWQPTRLCSMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLL
SLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL
KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGSPLPGREVKI
VNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGE
GIQPEEVERVIAAHPAVLQVFIVPVADKEFGHRPVAVMEYDHESVDLSEWVKDKLARFQQ
PVRWLTLPPELKNGGIKISRQALKEWVQRQQ
>gi|223713595|gb|ACDM01000003.1| GENE   147    154095  -    154361    199     88 aa, chain + ## HITS:1  COG:no KEGG:B21_02145 NR:ns ## KEGG: B21_02145 # Name: pmrD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      88       1      88      88     171  100.0  8e-42
MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGDLLSPLQNALYCINREK
LHTVKVLSASSYSPDEWERQCKVAGKTQ
>gi|223713595|gb|ACDM01000003.1| GENE   148    154355  -    154741    432    128 aa, chain - ## HITS:1  COG:yfbJ KEGG:ns NR:ns ## COG: yfbJ COG0697 # Protein_GI_number: 16130193 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1     128      95     222     222     206  100.0  6e-54
MGLMWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLS
VFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIF
LPTTKQRY
>gi|223713595|gb|ACDM01000003.1| GENE   149    154741  -    155076    383    111 aa, chain - ## HITS:1  COG:Z3516 KEGG:ns NR:ns ## COG: Z3516 COG0697 # Protein_GI_number: 15802807 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 EDL933 # 1     111       1     111     111     157   99.0  5e-39
MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLALACLGLAMVLWLLVLQN
VPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGSTV
>gi|223713595|gb|ACDM01000003.1| GENE   150    155073  -    156725   1475    550 aa, chain - ## HITS:1  COG:yfbI KEGG:ns NR:ns ## COG: yfbI COG1807 # Protein_GI_number: 16130192 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Escherichia coli K12 # 1     550       1     550     550    1046  100.0  0
MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFE
KPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYL
SLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKG
FLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWV
EHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIM
PLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIAT
FVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALL
VGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGE
LKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQE
RLVLIQYRPK
>gi|223713595|gb|ACDM01000003.1| GENE   151    156725  -    157615    826    296 aa, chain - ## HITS:1  COG:yfbH KEGG:ns NR:ns ## COG: yfbH COG0726 # Protein_GI_number: 16130191 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1     296       1     296     296     613  100.0  1e-175
MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDNMGRHLWRLVKPQFLWK
MLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHEVGLHAWDHHAWQARSGNW
DRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIEAKEAFHLRYNSDCRGAMPFR
PLLESGNPGTAQIPVTLPTWDEVIGRDVKAEDFNGWLLNRILRDKGTPVYTIHAEVEGCA
YQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVVRGNIAGREGWLGCQQIAGSR
>gi|223713595|gb|ACDM01000003.1| GENE   152    157612  -    159594   1707    660 aa, chain - ## HITS:1  COG:yfbG_2 KEGG:ns NR:ns ## COG: yfbG_2 COG0451 # Protein_GI_number: 16130190 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 306     660       1     355     355     766  100.0  0
MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD
NVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWV
LVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAI
KHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKF
TVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQ
GSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP
HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC
VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK
EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI
RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF
RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS
>gi|223713595|gb|ACDM01000003.1| GENE   153    159594  -    160562    843    322 aa, chain - ## HITS:1  COG:yfbF KEGG:ns NR:ns ## COG: yfbF COG0463 # Protein_GI_number: 16130189 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1     322       1     322     322     658  100.0  0
MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVE
ASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEG
YDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHER
STFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLINLMYDLVTCLTTTPLRMLSLLG
SIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYT
DVRARPRYFVQQVIRPSSKENE
>gi|223713595|gb|ACDM01000003.1| GENE   154    160566  -    161723    940    385 aa, chain - ## HITS:1  COG:yfbE KEGG:ns NR:ns ## COG: yfbE COG0399 # Protein_GI_number: 16130188 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Escherichia coli K12 # 1     385       6     390     390     755  100.0  0
MAEGKAMSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQLTGNQHAIAV
SSATAGMHITLMALKIGKGDEVITPSLTWVSTLNMISLLGATPVMVDVDRDTLMVTPEAI
ESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAKGTA
IFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGY
KYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFI
IRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICS
LPLFPDMTTADADHVITALQQLAGQ
>gi|223713595|gb|ACDM01000003.1| GENE   155    162013  -    162615    238    200 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_2593 NR:ns ## KEGG: ECUMN_2593 # Name: ais # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     200       1     200     200     378   99.0  1e-104
MLAFCRSSLKSKKYIIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFR
HAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSA
GKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKDKRDATFKPDYLD
GLVMHVEKGKVYLDGEFVNH
>gi|223713595|gb|ACDM01000003.1| GENE   156    162654  -    163079    382    141 aa, chain - ## HITS:1  COG:yfaO KEGG:ns NR:ns ## COG: yfaO COG0494 # Protein_GI_number: 16130186 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1     141       1     141     141     286  100.0  7e-78
MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWAISGGGVEPGERIEEALRREIREELGE
QLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSANREVKINEEFQDYAWVKPE
DLVHYDLNVATRKTLRLKGLL
>gi|223713595|gb|ACDM01000003.1| GENE   157    163358  -    163900    723    180 aa, chain + ## HITS:1  COG:no KEGG:B21_02135 NR:ns ## KEGG: B21_02135 # Name: yfaZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     180       1     180     180     275  100.0  4e-73
MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGD
VAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYS
PDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF
>gi|223713595|gb|ACDM01000003.1| GENE   158    164000  -    165202   1208    400 aa, chain + ## HITS:1  COG:yfaY KEGG:ns NR:ns ## COG: yfaY COG1058 # Protein_GI_number: 16130184 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Escherichia coli K12 # 1     400       1     400     400     795  100.0  0
MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRERSQH
ADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYFHERGRVMAPSNRKQAE
LPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPPV
CLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPIIELKLTGPASEQQAMEKLWLDVK
RVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQFTGGLLALQLSRAGAPLLACEVVPS
QEETLAQTAHWITERRANHFAGLALAVSGFENEHLNFALATPDGTFALRVRFSTTRYSLA
IRQEVCAMMALNMLRRWLNGQDIASEHGWIEVVESMTLSV
>gi|223713595|gb|ACDM01000003.1| GENE   159    165422  -    166204    578    260 aa, chain + ## HITS:1  COG:yfaX KEGG:ns NR:ns ## COG: yfaX COG1414 # Protein_GI_number: 16130183 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     260       1     260     260     521  100.0  1e-148
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ
ENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESS
ATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEEL
ARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
CARDISRLLGWKSPFDLQAS
>gi|223713595|gb|ACDM01000003.1| GENE   160    166219  -    167424   1140    401 aa, chain + ## HITS:1  COG:yfaW KEGG:ns NR:ns ## COG: yfaW COG4948 # Protein_GI_number: 16130182 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1     401       5     405     405     862  100.0  0
MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATPMSKYRDYEQSRQSFGI
NVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLSATL
YYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMG
FIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFWLMLDCWMSQDVNYATKLAHACA
PYNLKWIEECLPPQQYESYRELKRNAPVGMMVTSGEHHGTLQSFRTLSETGIDIMQPDVG
WCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTMRPQF
DPILLNEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRPYSH
>gi|223713595|gb|ACDM01000003.1| GENE   161    167481  -    168770   1356    429 aa, chain + ## HITS:1  COG:yfaV KEGG:ns NR:ns ## COG: yfaV COG0477 # Protein_GI_number: 16130181 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     429      14     442     442     751   99.0  0
MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQIDTGLSNEAYALGAGIF
FVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWADTEAKFLIVRTLLGAAEAG
FFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFV
IEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQLASEEQQKVTSRLSDALRNGRV
WQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAIPWVAALFGTWLIPRYSD
KTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGT
ALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRT
VAQTDVAHH
>gi|223713595|gb|ACDM01000003.1| GENE   162    168788  -    169591    930    267 aa, chain + ## HITS:1  COG:yfaU KEGG:ns NR:ns ## COG: yfaU COG3836 # Protein_GI_number: 16130180 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Escherichia coli K12 # 1     267       1     267     267     527  100.0  1e-150
MNALLSNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQ
LQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGER
GVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL
SASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
MLYSDALDQRLAMFKSGKNGPRIKGSY
>gi|223713595|gb|ACDM01000003.1| GENE   163    169632  -    169817    321     61 aa, chain - ## HITS:1  COG:ECs3129 KEGG:ns NR:ns ## COG: ECs3129 COG5464 # Protein_GI_number: 15832383 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      61     244     308     308     112   92.0  2e-25
MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANN
H
>gi|223713595|gb|ACDM01000003.1| GENE   164    169830  -    170729    815    299 aa, chain - ## HITS:1  COG:yfaD KEGG:ns NR:ns ## COG: yfaD COG5464 # Protein_GI_number: 16130179 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     299       1     299     299     588   99.0  1e-168
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAY
YSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPL
LFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQ
KHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQK
ERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>gi|223713595|gb|ACDM01000003.1| GENE   165    170922  -    172112   1157    396 aa, chain - ## HITS:1  COG:ECs3128 KEGG:ns NR:ns ## COG: ECs3128 COG0247 # Protein_GI_number: 15832382 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1     396       1     396     396     832  100.0  0
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCK
RCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKP
VRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGK
DLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIAT
SSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCH
MEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEES
GADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>gi|223713595|gb|ACDM01000003.1| GENE   166    172109  -    173368   1177    419 aa, chain - ## HITS:1  COG:glpB KEGG:ns NR:ns ## COG: glpB COG3075 # Protein_GI_number: 16130177 # Func_class: E Amino acid transport and metabolism # Function: Anaerobic glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1     419       1     419     419     809  100.0  0
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDI
HSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLR
STWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLR
NNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLP
CSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADI
PLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGV
TTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>gi|223713595|gb|ACDM01000003.1| GENE   167    173358  -    174986   1773    542 aa, chain - ## HITS:1  COG:ECs3126 KEGG:ns NR:ns ## COG: ECs3126 COG0578 # Protein_GI_number: 15832380 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     542       1     542     542    1050   99.0  0
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY
AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDNLSFQATFIRACEEAGISAEA
IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE
GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI
NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP
VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL
MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP
AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA
GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD
AL
>gi|223713595|gb|ACDM01000003.1| GENE   168    175259  -    176617   1457    452 aa, chain + ## HITS:1  COG:glpT KEGG:ns NR:ns ## COG: glpT COG2271 # Protein_GI_number: 16130175 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli K12 # 1     452       1     452     452     885  100.0  0
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGF
SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI
AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM
AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT
AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY
AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL
IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM
IGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>gi|223713595|gb|ACDM01000003.1| GENE   169    176622  -    177698   1160    358 aa, chain + ## HITS:1  COG:glpQ KEGG:ns NR:ns ## COG: glpQ COG0584 # Protein_GI_number: 16130174 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 1     358       1     358     358     719  100.0  0
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD
YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEG
FDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ
EGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTD
WNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMV
QDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>gi|223713595|gb|ACDM01000003.1| GENE   170    177740  -    177946    265     68 aa, chain - ## HITS:1  COG:yfaH KEGG:ns NR:ns ## COG: yfaH COG0583 # Protein_GI_number: 16130173 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1      68       1      68      68     116  100.0  1e-26
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCME
QLVAIGKI
>gi|223713595|gb|ACDM01000003.1| GENE   171    178161  -    178811    557    216 aa, chain + ## HITS:1  COG:no KEGG:B21_02122 NR:ns ## KEGG: B21_02122 # Name: inaA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     216       1     216     216     432  100.0  1e-120
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYP
FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH
AVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRR
LRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>gi|223713595|gb|ACDM01000003.1| GENE   172    178865  -    179119    156     84 aa, chain - ## HITS:1  COG:yfaE KEGG:ns NR:ns ## COG: yfaE COG0633 # Protein_GI_number: 16130171 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1      84       1      84      84     159  100.0  9e-40
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP
LAFIQPGEILPCCCRAKGDIEIEM
>gi|223713595|gb|ACDM01000003.1| GENE   173    179119  -    180249   1560    376 aa, chain - ## HITS:1  COG:ECs3118 KEGG:ns NR:ns ## COG: ECs3118 COG0208 # Protein_GI_number: 15832372 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Escherichia coli O157:H7 # 1     376       1     376     376     758  100.0  0
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDR
IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHS
RSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNG
KTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA
LHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGL
NKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVG
QIDSEVDTDDLSNFQL
>gi|223713595|gb|ACDM01000003.1| GENE   174    180483  -    182768   2783    761 aa, chain - ## HITS:1  COG:nrdA KEGG:ns NR:ns ## COG: nrdA COG0209 # Protein_GI_number: 16130169 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Escherichia coli K12 # 1     761       1     761     761    1584  100.0  0
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHE
TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLL
EDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL
FSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT
SSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGG
AATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSD
VPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHC
NTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEE
LAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLT
HKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWE
ALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE
HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLT
AYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>gi|223713595|gb|ACDM01000003.1| GENE   175    183512  -    187216   2921   1234 aa, chain + ## HITS:1  COG:yfaL_2 KEGG:ns NR:ns ## COG: yfaL_2 COG3468 # Protein_GI_number: 16130168 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 789    1234       1     446     446     745  100.0  0
MIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASG
GAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAG
GYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYT
STSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDI
SVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTEND
GAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDP
QDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGII
EGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGG
VLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDA
SDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDT
RSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTAS
GTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDG
TVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLT
NTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVN
SITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQ
EVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMER
RDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVG
GYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSE
QEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQG
DDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTG
NISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>gi|223713595|gb|ACDM01000003.1| GENE   176    187344  -    188066    803    240 aa, chain - ## HITS:1  COG:ubiG KEGG:ns NR:ns ## COG: ubiG COG2227 # Protein_GI_number: 16130167 # Func_class: H Coenzyme transport and metabolism # Function: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: Escherichia coli K12 # 1     240       1     240     240     500  100.0  1e-142
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKV
LDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHA
GQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRM
VPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>gi|223713595|gb|ACDM01000003.1| GENE   177    188213  -    190840   3290    875 aa, chain + ## HITS:1  COG:gyrA KEGG:ns NR:ns ## COG: gyrA COG0188 # Protein_GI_number: 16130166 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Escherichia coli K12 # 1     875       1     875     875    1658   99.0  0
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN
KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM
RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT
NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV
YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE
VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV
AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE
LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV
VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY
SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL
TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG
VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN
GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA
EPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>gi|223713595|gb|ACDM01000003.1| GENE   178    190989  -    192677   1285    562 aa, chain + ## HITS:1  COG:yfaA KEGG:ns NR:ns ## COG: yfaA COG4685 # Protein_GI_number: 16130165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     562      17     578     578    1127   99.0  0
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIELNEPDL
FLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKL
FSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKI
NSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRW
QASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDES
ASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWY
EDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRRE
VSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMV
DVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYV
MKLAQMEPGAAWQWLPITWQPL
>gi|223713595|gb|ACDM01000003.1| GENE   179    192674  -    193297    322    207 aa, chain + ## HITS:1  COG:ECs3112 KEGG:ns NR:ns ## COG: ECs3112 COG3234 # Protein_GI_number: 15832366 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     207      10     216     216     426  100.0  1e-119
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVR
FAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQ
YNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLM
TWKDTRWIPNDSNPNFIGIYRLNFLAR
>gi|223713595|gb|ACDM01000003.1| GENE   180    193231  -    197835   3790   1534 aa, chain + ## HITS:1  COG:ECs3111 KEGG:ns NR:ns ## COG: ECs3111 COG2373 # Protein_GI_number: 15832365 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli O157:H7 # 1    1534       1    1534    1534    2985   98.0  0
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLAD
SSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQY
LGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQ
FSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLV
EAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGV
TDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRV
DVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVA
GGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVK
NARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTV
SASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWL
RLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTV
DIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQY
EARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVE
LTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQA
LSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWR
ITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVT
KFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVE
QQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPL
SLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYAD
WQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAI
ARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQY
AWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPP
VVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNI
PVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLP
PGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQ
KGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>gi|223713595|gb|ACDM01000003.1| GENE   181    197836  -    199485   1131    549 aa, chain + ## HITS:1  COG:yfaQ KEGG:ns NR:ns ## COG: yfaQ COG5445 # Protein_GI_number: 16130163 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Escherichia coli K12 # 1     549       1     549     549    1085   99.0  0
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGS
LWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHI
GADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEA
KIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATV
LNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITF
VSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANR
EGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLFWRQAT
AQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYN
EPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIE
TLTRQLLMD
>gi|223713595|gb|ACDM01000003.1| GENE   182    199490  -    200266    602    258 aa, chain + ## HITS:1  COG:yfaP KEGG:ns NR:ns ## COG: yfaP COG4676 # Protein_GI_number: 16130162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     258       1     258     258     516  100.0  1e-146
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADD
QNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISP
DGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGA
LDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETF
IVPMRNAGELTLVKSFDW
>gi|223713595|gb|ACDM01000003.1| GENE   183    200340  -    201524   1351    394 aa, chain - ## HITS:1  COG:atoB KEGG:ns NR:ns ## COG: atoB COG0183 # Protein_GI_number: 16130161 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1     394       1     394     394     655  100.0  0
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAG
LGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSL
APYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELA
LHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAG
TVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKA
LQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILV
TLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>gi|223713595|gb|ACDM01000003.1| GENE   184    201555  -    202877   1001    440 aa, chain - ## HITS:1  COG:atoE KEGG:ns NR:ns ## COG: atoE COG2031 # Protein_GI_number: 16130160 # Func_class: I Lipid transport and metabolism # Function: Short chain fatty acids transporter # Organism: Escherichia coli K12 # 1     440       1     440     440     795  100.0  0
MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAF
GMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVG
AMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGD
TLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERL
EESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAA
RSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSG
GGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMG
YCITALLFSGVIFVIGLTLF
>gi|223713595|gb|ACDM01000003.1| GENE   185    202874  -    203524    520    216 aa, chain - ## HITS:1  COG:atoA KEGG:ns NR:ns ## COG: atoA COG2057 # Protein_GI_number: 16130159 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Escherichia coli K12 # 1     216       1     216     216     426  100.0  1e-119
MDAKQRIARRVAQELRDGDIVNLGIGLPTMVANYLPEGIHITLQSENGFLGLGPVTTAHP
DLVNAGGQPCGVLPGAAMFDSAMSFALIRGGHIDACVLGGLQVDEEANLANWVVPGKMVP
GMGGAMDLVTGSRKVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTELAVFRFIDGK
MWLTEIADGCDLATVRAKTEARFEVAADLNTQRGDL
>gi|223713595|gb|ACDM01000003.1| GENE   186    203524  -    204186    594    220 aa, chain - ## HITS:1  COG:atoD KEGG:ns NR:ns ## COG: atoD COG1788 # Protein_GI_number: 16130158 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Escherichia coli K12 # 1     220       1     220     220     411  100.0  1e-115
MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTG
IGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTP
TGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIAL
AADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQESK
>gi|223713595|gb|ACDM01000003.1| GENE   187    204382  -    205767    976    461 aa, chain - ## HITS:1  COG:atoC KEGG:ns NR:ns ## COG: atoC COG2204 # Protein_GI_number: 16130157 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1     461       1     461     461     911  100.0  0
MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPE
MDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL
QLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKE
LIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT
LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE
DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPG
NIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKR
IIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGIDPADV
>gi|223713595|gb|ACDM01000003.1| GENE   188    205764  -    207590   1354    608 aa, chain - ## HITS:1  COG:atoS_3 KEGG:ns NR:ns ## COG: atoS_3 COG0642 # Protein_GI_number: 16130156 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 331     608       1     278     278     529  100.0  1e-150
MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVLSEKEKKLSAVVNLLNQ
ALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAGYYNKMLDAIITYAPSALY
QNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSMLPIERNGEILGYIWANELTED
IRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTRLPQLP
GEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRH
ELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALEISFPGRDRTIELSVTTSRIHNTHGEM
IGALVIFSDLTARKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSD
PIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARV
DFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDN
GCGIDLSLQKKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI
NPQGNQTV
>gi|223713595|gb|ACDM01000003.1| GENE   189    207757  -    210606   1964    949 aa, chain + ## HITS:1  COG:rcsC_1 KEGG:ns NR:ns ## COG: rcsC_1 COG0642 # Protein_GI_number: 16130155 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 17     716       1     700     700    1439  100.0  0
MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQ
RFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRG
SLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINK
YRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTL
PMGVTILDENGHTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIV
YSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNR
KIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSN
NTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHE
LRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEP
REFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKF
TDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI
CEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQ
FLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGE
WVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLL
ADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI
GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS
>gi|223713595|gb|ACDM01000003.1| GENE   190    210806  -    211456    817    216 aa, chain - ## HITS:1  COG:ECs3106 KEGG:ns NR:ns ## COG: ECs3106 COG2197 # Protein_GI_number: 15832360 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     216       1     216     216     400  100.0  1e-111
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP
GDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKAL
AALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIK
TISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD
>gi|223713595|gb|ACDM01000003.1| GENE   191    211473  -    214145   2481    890 aa, chain - ## HITS:1  COG:yojN_1 KEGG:ns NR:ns ## COG: yojN_1 COG0642 # Protein_GI_number: 16130153 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     700       1     700     700    1286  100.0  0
MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAI
QKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDNS
TLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVD
SRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP
PGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGT
LLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTENVPSTAVNNELRILRAINEEI
VSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTMAEQHQGIIQATINNELYEIR
MFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRMIFMKNIGDALKEPAQSL
AESAAKLNAPESKQLANQADVLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSV
LPAIKRKGLQLLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESS
EDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNI
KTRDGLGTRYSVHIKMLAADPEVEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATC
ITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVL
QLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQT
AHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL
>gi|223713595|gb|ACDM01000003.1| GENE   192    214884  -    215987   1312    367 aa, chain + ## HITS:1  COG:ompC KEGG:ns NR:ns ## COG: ompC COG3203 # Protein_GI_number: 16130152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     367       1     367     367     638  100.0  0
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLG
FKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYD
VTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGE
GFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAE
TYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQ
SKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVA
LGLVYQF
>gi|223713595|gb|ACDM01000003.1| GENE   193    216099  -    217154   1294    351 aa, chain + ## HITS:1  COG:ECs3103 KEGG:ns NR:ns ## COG: ECs3103 COG1477 # Protein_GI_number: 15832357 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Escherichia coli O157:H7 # 1     351       1     351     351     698  100.0  0
MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAE
LKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGA
MDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLY
VDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENA
VQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADA
WDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN
>gi|223713595|gb|ACDM01000003.1| GENE   194    217228  -    218292    650    354 aa, chain + ## HITS:1  COG:ada_1 KEGG:ns NR:ns ## COG: ada_1 COG2169 # Protein_GI_number: 16130150 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Escherichia coli K12 # 1     184       1     184     184     363  100.0  1e-100
MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRENVSFYANASE
ALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLF
KATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFPDSSSYYRKADETLGMTAKQF
RHGGENLAVRYALADCELGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADL
MFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKP
KAVRAVASACAANKLAIIIPCHRVVRGDGTLSGYRWGVSRKAQLLRREAENEER
>gi|223713595|gb|ACDM01000003.1| GENE   195    218295  -    218942    509    215 aa, chain + ## HITS:1  COG:alkB KEGG:ns NR:ns ## COG: alkB COG3145 # Protein_GI_number: 16130149 # Func_class: L Replication, recombination and repair # Function: Alkylated DNA repair protein # Organism: Escherichia coli K12 # 1     215       2     216     216     447   99.0  1e-126
MDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAM
TNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINR
YAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGE
SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
>gi|223713595|gb|ACDM01000003.1| GENE   196    219018  -    220661    197    547 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 326     541     133     357     398 80  32 6e-14
MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSLLVLPEFLGLLLL
LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLAGLTSDVRNITI
AFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAITIWGGFVLVARVYKHMATLRE
TEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDAQEYRHHIIRADTFHLSAVNWSN
IMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLTAQVAFNKLN
KFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGS
GKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVWLFNQLLGPEGKPA
NPQLVEKWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQ
DPHFRREFYQVLLPLMQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR
DAVARTA
>gi|223713595|gb|ACDM01000003.1| GENE   197    220879  -    222525   1835    548 aa, chain + ## HITS:1  COG:yojH KEGG:ns NR:ns ## COG: yojH COG0579 # Protein_GI_number: 16130147 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli K12 # 1     548       1     548     548    1078  100.0  0
MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSATLGTYLRELEPEWSMT
MVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAINEAFQISRQFWA
HQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKE
WAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRND
DNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSE
NPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFSTKFLKNGSLWDL
MSSTTTSNVMPMMHVGLDNFDLVKYLVSQVMLSEEDRFEALKEYYPQAKKEDWRLWQAGQ
RVQIIKRDAEKGGVLRLGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEKVFGDRVSS
PQWQATLKAIVPSYGRKLNGDVAATERELQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQ
KEVADIAL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:33:55 2011
 Seq name: gi|223713594|gb|ACDM01000004.1| Escherichia sp. 4_1_40B cont1.4, whole genome shotgun sequence 
 Length of sequence - 175385 bp
 Number of predicted genes - 152, with homology - 150
 Number of transcription units - 74, operones - 32 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         44 -       532    523  ## COG4574 Serine protease inhibitor ecotin
                               -    Prom       576 -       635    3.4 
     2     2 Tu  1     .       -    CDS        667 -       831     66  ## BWG_1982 hypothetical protein
                               -    Prom       873 -       932    5.2 
     3     3 Op  1  10/0.029   +    CDS       1424 -      1687    332  ## COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase
     4     3 Op  2  10/0.029   +    CDS       1684 -      4170   3236  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
     5     3 Op  3   7/0.059   +    CDS       4177 -      4872    477  ## COG1145 Ferredoxin
     6     3 Op  4   4/0.324   +    CDS       4859 -      5722    669  ## COG0348 Polyferredoxin
     7     3 Op  5   7/0.059   +    CDS       5698 -      6168    497  ## COG3043 Nitrate reductase cytochrome c-type subunit
     8     3 Op  6   3/0.471   +    CDS       6178 -      6780    562  ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit
     9     3 Op  7  14/0.000   +    CDS       6793 -      7416    536  ## COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component
    10     3 Op  8  14/0.000   +    CDS       7416 -      8075    774  ## COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component
    11     3 Op  9   9/0.029   +    CDS       8117 -      8854    744  ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component
    12     3 Op 10   9/0.029   +    CDS       8851 -      9060    277  ## COG3114 Heme exporter protein D
    13     3 Op 11  16/0.000   +    CDS       9057 -      9536    683  ## COG2332 Cytochrome c-type biogenesis protein CcmE
    14     3 Op 12  11/0.029   +    CDS       9533 -     11476   2372  ## COG1138 Cytochrome c biogenesis factor
    15     3 Op 13   5/0.118   +    CDS      11473 -     12030    674  ## COG0526 Thiol-disulfide isomerase and thioredoxins
    16     3 Op 14     .       +    CDS      12027 -     13079   1226  ## COG4235 Cytochrome c biogenesis factor
                               +    Term     13134 -     13187    3.0 
                               -    Term     13247 -     13286    6.2 
    17     4 Tu  1     .       -    CDS      13290 -     13937    860  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
                               -    Prom     14073 -     14132    3.8 
                               +    Prom     14032 -     14091    3.2 
    18     5 Tu  1     .       +    CDS      14257 -     16848   1676  ## COG3468 Type V secretory pathway, adhesin AidA
                               +    Term     16863 -     16898    4.2 
                               -   TRNA      16951 -     17027   78.0  # Pro GGG 0 0
                               -    Term     16899 -     16940    4.0 
    19     6 Op  1   8/0.029   -    CDS      17102 -     18862   1690  ## COG3083 Predicted hydrolase of alkaline phosphatase superfamily
    20     6 Op  2     .       -    CDS      18882 -     19109    303  ## COG3082 Uncharacterized protein conserved in bacteria
                               -    Prom     19181 -     19240    4.6 
                               +    Prom     19166 -     19225    6.9 
    21     7 Tu  1     .       +    CDS      19291 -     20298   1290  ## COG3081 Nucleoid-associated protein
                               +    Term     20388 -     20436    4.6 
                               -    Term     20371 -     20425    6.4 
    22     8 Op  1     .       -    CDS      20437 -     20817    633  ## PROTEIN SUPPORTED gi|26108973|gb|AAN81176.1|AE016763_135 50S ribosomal protein L25
    23     8 Op  2     .       -    CDS      20846 -     22606   1718  ## COG1061 DNA or RNA helicases of superfamily II
    24     8 Op  3     .       -    CDS      22632 -     22889     80  ## gi|466200|sp|P28247|BICB_ECOLI RecName: Full=Putative uncharacterized protein BicB gi|405943|gb|AAA16407.1| bicB/yeiD
                               -    Prom     23001 -     23060    1.7 
                               +    Prom     22635 -     22694    3.5 
    25     9 Op  1   8/0.029   +    CDS      22755 -     23450    799  ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
    26     9 Op  2     .       +    CDS      23478 -     24668   1210  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     24684 -     24713    0.5 
                               +    Prom     24713 -     24772    5.2 
    27    10 Tu  1     .       +    CDS      25001 -     25345    228  ## EC55989_2435 hypothetical protein
                               +    Term     25381 -     25428    3.6 
    28    11 Op  1  11/0.029   -    CDS      25349 -     26938    332  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
    29    11 Op  2  11/0.029   -    CDS      26940 -     27965   1089  ## COG4239 ABC-type uncharacterized transport system, permease component
    30    11 Op  3  11/0.029   -    CDS      27965 -     29059   1383  ## COG4174 ABC-type uncharacterized transport system, permease component
    31    11 Op  4   2/0.647   -    CDS      29060 -     30874   1540  ## COG4166 ABC-type oligopeptide transport system, periplasmic component
    32    11 Op  5   5/0.118   -    CDS      30956 -     32512   1167  ## COG2200 FOG: EAL domain
                               -    Prom     32543 -     32602    4.1 
                               -    Term     32610 -     32647    6.4 
    33    12 Tu  1     .       -    CDS      32693 -     33259    358  ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1
                               -    Prom     33318 -     33377    5.5 
    34    13 Op  1   3/0.471   -    CDS      33671 -     34384    491  ## COG0671 Membrane-associated phospholipid phosphatase
    35    13 Op  2   3/0.471   -    CDS      34423 -     35409    668  ## COG0523 Putative GTPases (G3E family)
                               -    Term     35465 -     35516    2.2 
    36    14 Tu  1     .       -    CDS      35527 -     36993   1194  ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases
                               -    Prom     37024 -     37083    6.3 
                               -    Term     37156 -     37204    5.0 
    37    15 Tu  1     .       -    CDS      37216 -     37788    775  ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
                               +    Prom     37718 -     37777    3.4 
    38    16 Tu  1     .       +    CDS      37943 -     38197    181  ## COG0727 Predicted Fe-S-cluster oxidoreductase
    39    17 Tu  1     .       -    CDS      38194 -     39375   1040  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     39524 -     39583    3.7 
                               +    Prom     39583 -     39642    3.5 
    40    18 Op  1  11/0.029   +    CDS      39743 -     40873   1436  ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain
    41    18 Op  2  19/0.000   +    CDS      40873 -     41811   1009  ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
    42    18 Op  3   4/0.324   +    CDS      41828 -     43519   1998  ## COG1299 Phosphotransferase system, fructose-specific IIC component
                               +    Term     43529 -     43573   11.0 
                               +    Prom     43697 -     43756    4.2 
    43    19 Op  1   8/0.029   +    CDS      43942 -     44883    589  ## COG0524 Sugar kinases, ribokinase family
    44    19 Op  2   4/0.324   +    CDS      44871 -     45809   1113  ## COG2313 Uncharacterized enzyme involved in pigment biosynthesis
    45    19 Op  3     .       +    CDS      45903 -     47153   1542  ## COG1972 Nucleoside permease
    46    20 Tu  1     .       -    CDS      47224 -     47922    539  ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
                               -    Prom     48150 -     48209    6.1 
                               +    Prom     47927 -     47986    3.5 
    47    21 Op  1   3/0.471   +    CDS      48052 -     48993   1084  ## COG1957 Inosine-uridine nucleoside N-ribohydrolase
                               +    Term     49007 -     49050    7.5 
    48    21 Op  2     .       +    CDS      49093 -     50343   1355  ## COG1972 Nucleoside permease
    49    22 Op  1   3/0.471   -    CDS      50450 -     51538    740  ## COG0524 Sugar kinases, ribokinase family
    50    22 Op  2   5/0.118   -    CDS      51541 -     52398    868  ## COG0648 Endonuclease IV
    51    22 Op  3     .       -    CDS      52472 -     53521   1236  ## COG2855 Predicted membrane protein
                               -    Prom     53572 -     53631    9.8 
                               +    Prom     53541 -     53600    9.1 
    52    23 Op  1     .       +    CDS      53620 -     54501    204  ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35
                               +    Prom     54619 -     54678    5.3 
    53    23 Op  2     .       +    CDS      54706 -     56175   1922  ## COG0833 Amino acid transporters
                               +    Term     56197 -     56228    4.1 
                               +    Prom     56207 -     56266    7.1 
    54    24 Tu  1     .       +    CDS      56469 -     58460   2074  ## COG4771 Outer membrane receptor for ferrienterochelin and colicins
                               +    Term     58469 -     58499    2.1 
                               -    Term     58458 -     58485    1.5 
    55    25 Tu  1     .       -    CDS      58492 -     59328    782  ## COG0627 Predicted esterase
                               -    Prom     59572 -     59631    3.0 
                               +    Prom     59410 -     59469    4.7 
    56    26 Op  1   4/0.324   +    CDS      59586 -     60254    728  ## COG0302 GTP cyclohydrolase I
    57    26 Op  2     .       +    CDS      60271 -     61428   1165  ## COG2311 Predicted membrane protein
    58    27 Tu  1     .       -    CDS      61377 -     61580    105  ## ECIAI1_2229 hypothetical protein
                               +    Prom     61468 -     61527    1.9 
    59    28 Tu  1     .       +    CDS      61570 -     62610   1001  ## COG1609 Transcriptional regulators
                               +    Term     62622 -     62651   -0.2 
                               +    Prom     62656 -     62715    5.2 
    60    29 Op  1  16/0.000   +    CDS      62890 -     63888   1382  ## COG1879 ABC-type sugar transport system, periplasmic component
                               +    Term     63897 -     63932    6.1 
    61    29 Op  2  10/0.029   +    CDS      63949 -     65469   1586  ## COG1129 ABC-type sugar transport system, ATPase component
    62    29 Op  3     .       +    CDS      65485 -     66495   1443  ## COG4211 ABC-type glucose/galactose transport system, permease component
                               +    Term     66695 -     66740    0.3 
                               -    Term     66591 -     66634    3.9 
    63    30 Op  1   4/0.324   -    CDS      66738 -     67973   1310  ## COG0167 Dihydroorotate dehydrogenase
    64    30 Op  2     .       -    CDS      67967 -     69205    939  ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases
                               -    Prom     69338 -     69397    5.1 
                               -    Term     69306 -     69347    1.2 
    65    31 Op  1     .       -    CDS      69399 -     69638    236  ## G2583_2688 hypothetical protein
    66    31 Op  2   3/0.471   -    CDS      69641 -     70360    893  ## COG2949 Uncharacterized membrane protein
                               -    Prom     70391 -     70450    3.7 
                               -    Term     70414 -     70442    1.6 
    67    32 Tu  1     .       -    CDS      70510 -     71394    882  ## COG0295 Cytidine deaminase
                               -    Prom     71420 -     71479    4.5 
    68    33 Op  1  23/0.000   -    CDS      71524 -     72219    758  ## COG1346 Putative effector of murein hydrolase
    69    33 Op  2     .       -    CDS      72216 -     72614    394  ## COG1380 Putative effector of murein hydrolase LrgA
                               -    Prom     72635 -     72694    3.9 
                               +    Prom     72772 -     72831    5.0 
    70    34 Tu  1     .       +    CDS      72853 -     73800    986  ## COG0042 tRNA-dihydrouridine synthase
    71    35 Tu  1     .       -    CDS      74173 -     74256     65  ## 
                               -    Prom     74280 -     74339    6.2 
                               +    Prom     74284 -     74343    5.8 
    72    36 Op  1   2/0.647   +    CDS      74480 -     75916   1205  ## COG1538 Outer membrane protein
    73    36 Op  2     .       +    CDS      75969 -     76730    204  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
                               -    Term     76771 -     76797   -1.0 
    74    37 Tu  1     .       -    CDS      76860 -     77438    646  ## COG0586 Uncharacterized membrane-associated protein
                               -    Prom     77539 -     77598    5.2 
                               +    Prom     77516 -     77575    3.1 
    75    38 Tu  1     .       +    CDS      77608 -     78195    634  ## APECO1_4414 hypothetical protein
                               +    Term     78209 -     78254   11.2 
                               +    Prom     78239 -     78298    5.1 
    76    39 Tu  1     .       +    CDS      78408 -     79301   1074  ## COG1686 D-alanyl-D-alanine carboxypeptidase
                               +    Term     79309 -     79345    4.3 
                               -    Term     79245 -     79273    1.3 
    77    40 Tu  1     .       -    CDS      79339 -     81054   1625  ## COG0277 FAD/FMN-containing dehydrogenases
                               -    Prom     81087 -     81146    6.1 
                               +    Prom     81045 -     81104    5.9 
    78    41 Tu  1     .       +    CDS      81250 -     83547   2869  ## COG1472 Beta-glucosidase-related glycosidases
                               +    Term     83552 -     83598    4.2 
                               +    Prom     83552 -     83611    5.0 
    79    42 Op  1  13/0.029   +    CDS      83799 -     84716   1082  ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
    80    42 Op  2  24/0.000   +    CDS      84723 -     85880   1293  ## COG1174 ABC-type proline/glycine betaine transport systems, permease component
    81    42 Op  3  24/0.000   +    CDS      85873 -     86799   1161  ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components
    82    42 Op  4     .       +    CDS      86804 -     87535    887  ## COG1174 ABC-type proline/glycine betaine transport systems, permease component
                               +    Term     87784 -     87823    1.2 
                               -    Term     87337 -     87376   -0.7 
    83    43 Op  1     .       -    CDS      87516 -     87623    187  ## 
    84    43 Op  2     .       -    CDS      87683 -     88414    650  ## COG0789 Predicted transcriptional regulators
                               -    Prom     88501 -     88560    4.4 
                               +    Prom     88465 -     88524    3.5 
    85    44 Op  1   9/0.029   +    CDS      88735 -     90321   1272  ## COG3275 Putative regulator of cell autolysis
    86    44 Op  2   2/0.647   +    CDS      90318 -     91037    897  ## COG3279 Response regulator of the LytR/AlgR family
    87    44 Op  3     .       +    CDS      91084 -     91554    448  ## COG4807 Uncharacterized protein conserved in bacteria
                               +    Term     91560 -     91605    9.2 
                               -    Term     91349 -     91393    4.0 
    88    45 Tu  1     .       -    CDS      91595 -     92056    542  ## COG4808 Uncharacterized protein conserved in bacteria
                               -    Prom     92114 -     92173    1.7 
                               -    Term     92072 -     92102    2.0 
    89    46 Op  1     .       -    CDS      92181 -     94184   1123  ## COG2801 Transposase and inactivated derivatives
    90    46 Op  2     .       -    CDS      94181 -     95317    883  ## JW5350 conserved hypothetical protein
    91    46 Op  3     .       -    CDS      95310 -     97589   1635  ## EcolC_1528 hypothetical protein
    92    46 Op  4     .       -    CDS      97600 -     98688   1003  ## COG0714 MoxR-like ATPases
                               -    Prom     98763 -     98822    7.7 
                               -    Term     98787 -     98831    7.7 
    93    47 Op  1     .       -    CDS      98995 -     99312    108  ## EcolC_1530 hypothetical protein
                               -    Term     99332 -     99365    3.7 
    94    47 Op  2     .       -    CDS      99373 -    103005   2644  ## EcolC_1531 putative regulator
    95    47 Op  3   1/0.882   -    CDS     103015 -    106809   2070  ## COG3831 Uncharacterized conserved protein
                               -    Prom    106889 -    106948    3.0 
                               -    Term    106907 -    106938    2.4 
    96    48 Tu  1     .       -    CDS     106950 -    108983   2358  ## COG0143 Methionyl-tRNA synthetase
                               -    Prom    109013 -    109072    4.4 
                               +    Prom    109028 -    109087    2.7 
    97    49 Op  1     .       +    CDS     109115 -    110224   1138  ## COG0489 ATPases involved in chromosome partitioning
                               +    Term    110263 -    110326   10.0 
                               +    Prom    110345 -    110404    2.8 
    98    49 Op  2     .       +    CDS     110487 -    110768    162  ## JW2099 hypothetical protein
                               +    Term    110795 -    110849   15.2 
                               +    Prom    110922 -    110981    7.1 
    99    50 Op  1   7/0.059   +    CDS     111061 -    111603    450  ## COG3539 P pilus assembly protein, pilin FimA
                               +    Term    111640 -    111674    5.1 
   100    50 Op  2  10/0.029   +    CDS     111683 -    112357    410  ## COG3121 P pilus assembly protein, chaperone PapD
   101    50 Op  3     .       +    CDS     112373 -    114853   1695  ## COG3188 P pilus assembly protein, porin PapC
                               +    Prom    114888 -    114947    4.7 
   102    51 Tu  1     .       +    CDS     115064 -    115903    355  ## ECUMN_2440 putative exported fimbrial-like adhesin protein
                               +    Term    115959 -    115991    3.0 
   103    52 Tu  1     .       -    CDS     115985 -    116323    316  ## COG5455 Predicted integral membrane protein
                               -    Prom    116371 -    116430    3.6 
                               -    Term    116429 -    116459    1.1 
   104    53 Tu  1     .       -    CDS     116542 -    117366    601  ## COG2215 ABC-type uncharacterized transport system, permease component
                               -    Prom    117393 -    117452    3.9 
                               +    Prom    117404 -    117463    5.0 
   105    54 Tu  1     .       +    CDS     117487 -    117759    401  ## COG1937 Uncharacterized protein conserved in bacteria
                               +    Prom    117773 -    117832    3.0 
   106    55 Op  1  12/0.029   +    CDS     118063 -    118770    452  ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family
   107    55 Op  2   2/0.647   +    CDS     118767 -    119567    654  ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
   108    55 Op  3   2/0.647   +    CDS     119632 -    120450    601  ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
   109    55 Op  4     .       +    CDS     120502 -    121248    555  ## COG2188 Transcriptional regulators
                               -    Term    121129 -    121185   11.1 
   110    56 Op  1   5/0.118   -    CDS     121222 -    122187    879  ## COG0524 Sugar kinases, ribokinase family
   111    56 Op  2   4/0.324   -    CDS     122184 -    123188    956  ## COG1397 ADP-ribosylglycohydrolase
   112    56 Op  3     .       -    CDS     123185 -    124462   1429  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    124510 -    124569    3.7 
                               +    Prom    124513 -    124572    4.4 
   113    57 Tu  1     .       +    CDS     124719 -    125771   1172  ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes
                               +    Term    125856 -    125889    5.2 
                               +    Prom    125860 -    125919    3.8 
   114    58 Op  1     .       +    CDS     125999 -    126853    698  ## COG0191 Fructose/tagatose bisphosphate aldolase
   115    58 Op  2   4/0.324   +    CDS     126882 -    128144    959  ## COG4573 Predicted tagatose 6-phosphate kinase
   116    58 Op  3  13/0.029   +    CDS     128154 -    128606    259  ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
   117    58 Op  4  10/0.029   +    CDS     128637 -    128921    335  ## COG3414 Phosphotransferase system, galactitol-specific IIB component
   118    58 Op  5   7/0.059   +    CDS     128925 -    130280   1718  ## COG3775 Phosphotransferase system, galactitol-specific IIC component
   119    58 Op  6   3/0.471   +    CDS     130328 -    131368    718  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
                               +    Term    131374 -    131408    7.4 
                               +    Prom    131393 -    131452    3.0 
   120    59 Tu  1     .       +    CDS     131474 -    132247    514  ## COG1349 Transcriptional regulators of sugar metabolism
   121    60 Tu  1     .       -    CDS     132329 -    133228    633  ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
                               -    Prom    133255 -    133314    3.3 
                               +    Prom    133543 -    133602    7.7 
   122    61 Tu  1     .       +    CDS     133685 -    133960    195  ## ECSE_2357 hypothetical protein
                               -    Term    134114 -    134153    5.1 
   123    62 Tu  1     .       -    CDS     134290 -    135651   1663  ## COG0826 Collagenase and related proteases
                               -    Prom    135726 -    135785    5.1 
   124    63 Tu  1     .       -    CDS     135799 -    136131    373  ## COG3422 Uncharacterized conserved protein
   125    64 Op  1  40/0.000   -    CDS     136311 -    137033    831  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
   126    64 Op  2  10/0.029   -    CDS     137030 -    138433   1310  ## COG0642 Signal transduction histidine kinase
   127    64 Op  3   5/0.118   -    CDS     138430 -    139845   1345  ## COG0477 Permeases of the major facilitator superfamily
   128    64 Op  4  10/0.029   -    CDS     139846 -    142923   3222  ## COG0841 Cation/multidrug efflux pump
   129    64 Op  5  27/0.000   -    CDS     142924 -    146046   3423  ## COG0841 Cation/multidrug efflux pump
   130    64 Op  6     .       -    CDS     146046 -    147293   1301  ## COG0845 Membrane-fusion protein
                               -    Prom    147365 -    147424    3.4 
                               +    Prom    148748 -    148807    3.3 
   131    65 Op  1     .       +    CDS     148837 -    149496    571  ## COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain
   132    65 Op  2     .       +    CDS     149574 -    150254    539  ## ECUMN_2410 hypothetical protein
                               -    Term    150247 -    150293    6.8 
   133    66 Tu  1     .       -    CDS     150319 -    150762    419  ## COG3779 Uncharacterized protein conserved in bacteria
                               -    Prom    150850 -    150909    6.7 
                               +    Prom    150880 -    150939    6.6 
   134    67 Tu  1     .       +    CDS     150981 -    152927   1196  ## COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains
                               +    Term    153151 -    153188   -0.3 
   135    68 Tu  1     .       -    CDS     152940 -    154292   1591  ## COG0443 Molecular chaperone
                               -    Prom    154320 -    154379    4.1 
   136    69 Tu  1     .       +    CDS     154426 -    155283    776  ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
   137    70 Tu  1     .       -    CDS     155321 -    158638   2794  ## COG2202 FOG: PAS/PAC domain
                               -    Prom    158700 -    158759    4.6 
   138    71 Op  1   4/0.324   +    CDS     158956 -    159597    609  ## COG0572 Uridine kinase
   139    71 Op  2   4/0.324   +    CDS     159689 -    160270    682  ## COG0717 Deoxycytidine deaminase
   140    71 Op  3     .       +    CDS     160292 -    162145   1393  ## COG2982 Uncharacterized protein involved in outer membrane biogenesis
   141    72 Tu  1     .       -    CDS     162597 -    164180   1912  ## COG1253 Hemolysins and related proteins containing CBS domains
                               -    Prom    164282 -    164341    5.0 
                               +    Prom    164695 -    164754    6.0 
   142    73 Op  1   6/0.059   +    CDS     164923 -    165978   1074  ## COG1596 Periplasmic protein involved in polysaccharide export
   143    73 Op  2   3/0.471   +    CDS     165984 -    166427    470  ## COG0394 Protein-tyrosine-phosphatase
   144    73 Op  3   2/0.647   +    CDS     166430 -    168592   2516  ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis
   145    74 Op  1   4/0.324   +    CDS     168721 -    169560    722  ## COG0463 Glycosyltransferases involved in cell wall biogenesis
   146    74 Op  2   5/0.118   +    CDS     169563 -    170051    503  ## COG1045 Serine acetyltransferase
   147    74 Op  3     .       +    CDS     170048 -    171265   1149  ## COG0438 Glycosyltransferase
   148    74 Op  4     .       +    CDS     171240 -    172457    883  ## B21_01951 hypothetical protein
   149    74 Op  5   7/0.059   +    CDS     172468 -    173214    649  ## COG0463 Glycosyltransferases involved in cell wall biogenesis
   150    74 Op  6   5/0.118   +    CDS     173230 -    173778    341  ## COG0110 Acetyltransferase (isoleucine patch superfamily)
   151    74 Op  7  14/0.000   +    CDS     173805 -    174926   1355  ## COG1089 GDP-D-mannose dehydratase
   152    74 Op  8     .       +    CDS     174929 -    175385    474  ## COG0451 Nucleoside-diphosphate-sugar epimerases
Predicted protein(s)
>gi|223713594|gb|ACDM01000004.1| GENE     1        44  -       532    523    162 aa, chain - ## HITS:1  COG:eco KEGG:ns NR:ns ## COG: eco COG4574 # Protein_GI_number: 16130146 # Func_class: R General function prediction only # Function: Serine protease inhibitor ecotin # Organism: Escherichia coli K12 # 1     162       1     162     162     322  100.0  2e-88
MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVEL
LIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFDKVSSPVSTMMACPDGKKEKKFVTAY
LGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAVVR
>gi|223713594|gb|ACDM01000004.1| GENE     2       667  -       831     66     54 aa, chain - ## HITS:1  COG:no KEGG:BWG_1982 NR:ns ## KEGG: BWG_1982 # Name: yojO # Def: hypothetical protein # Organism: E.coli_BW2952 # Pathway: not_defined # 1      54       1      54      54     107  100.0  9e-23
MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKYIYIAIDSPEIFLLVCSLIRI
>gi|223713594|gb|ACDM01000004.1| GENE     3      1424  -      1687    332     87 aa, chain + ## HITS:1  COG:ECs3096 KEGG:ns NR:ns ## COG: ECs3096 COG3062 # Protein_GI_number: 15832350 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in formation of periplasmic nitrate reductase # Organism: Escherichia coli O157:H7 # 1      87       1      87      87     139  100.0  2e-33
MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTI
ESVRNVEGVLAVSLVYHQQEEQGEETP
>gi|223713594|gb|ACDM01000004.1| GENE     4      1684  -      4170   3236    828 aa, chain + ## HITS:1  COG:napA KEGG:ns NR:ns ## COG: napA COG0243 # Protein_GI_number: 16130143 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     828       1     828     828    1724  100.0  0
MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKAPCRFCGTGCGVLVGTQ
QGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITW
DQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCM
ASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVA
VLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIG
YGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYA
DPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREV
GTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMC
TNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAER
RTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPE
VSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPV
VNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGR
VLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETR
GRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEKV
>gi|223713594|gb|ACDM01000004.1| GENE     5      4177  -      4872    477    231 aa, chain + ## HITS:1  COG:napG KEGG:ns NR:ns ## COG: napG COG1145 # Protein_GI_number: 16130142 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1     231       1     231     231     449  100.0  1e-126
MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGVRLRPPGAINENAFASA
CVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCAKVCPSGALDREI
ESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEAITLELERNTRTGKHARFLPT
VHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHHYRFGWLEGNNGKS
>gi|223713594|gb|ACDM01000004.1| GENE     6      4859  -      5722    669    287 aa, chain + ## HITS:1  COG:napH KEGG:ns NR:ns ## COG: napH COG0348 # Protein_GI_number: 16130141 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Escherichia coli K12 # 1     287       1     287     287     549  100.0  1e-156
MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLF
DTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANW
LRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALL
ILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPH
VLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS
>gi|223713594|gb|ACDM01000004.1| GENE     7      5698  -      6168    497    156 aa, chain + ## HITS:1  COG:ECs3092 KEGG:ns NR:ns ## COG: ECs3092 COG3043 # Protein_GI_number: 15832346 # Func_class: C Energy production and conversion # Function: Nitrate reductase cytochrome c-type subunit # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     320  100.0  7e-88
MEFGSEIMKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQ
DRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVG
AEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK
>gi|223713594|gb|ACDM01000004.1| GENE     8      6178  -      6780    562    200 aa, chain + ## HITS:1  COG:ECs3091 KEGG:ns NR:ns ## COG: ECs3091 COG3005 # Protein_GI_number: 15832345 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 1     200       1     200     200     429  100.0  1e-120
MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGFNTGMEKANTEEFCISC
HEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIRKLKASKELYGKIFGVIDT
PQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTAQKSVAAKMHDQAVKDGQTCI
DCHKGIAHKLPDMREVEPGF
>gi|223713594|gb|ACDM01000004.1| GENE     9      6793  -      7416    536    207 aa, chain + ## HITS:1  COG:ccmA KEGG:ns NR:ns ## COG: ccmA COG4133 # Protein_GI_number: 16130138 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, ATPase component # Organism: Escherichia coli K12 # 3     207       1     205     205     375  100.0  1e-104
MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEV
LWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAG
FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI
VILTTHQPLNVAESKIRRISLTQTRAA
>gi|223713594|gb|ACDM01000004.1| GENE    10      7416  -      8075    774    219 aa, chain + ## HITS:1  COG:ECs3089 KEGG:ns NR:ns ## COG: ECs3089 COG2386 # Protein_GI_number: 15832343 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1     219       2     220     220     280  100.0  2e-75
MFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLS
SLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGM
DVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMD
AASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ
>gi|223713594|gb|ACDM01000004.1| GENE    11      8117  -      8854    744    245 aa, chain + ## HITS:1  COG:ECs3088 KEGG:ns NR:ns ## COG: ECs3088 COG0755 # Protein_GI_number: 15832342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1     245       1     245     245     417  100.0  1e-116
MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFAPADYQQGNSYRIIYLH
VPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAVFTFIALVTGSAWGKPMWG
TWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWW
NTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTLMRMRNLILLMEKRRPWVSELIL
KRGRK
>gi|223713594|gb|ACDM01000004.1| GENE    12      8851  -      9060    277     69 aa, chain + ## HITS:1  COG:ECs3087 KEGG:ns NR:ns ## COG: ECs3087 COG3114 # Protein_GI_number: 15832341 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Heme exporter protein D # Organism: Escherichia coli O157:H7 # 1      69       1      69      69      90  100.0  7e-19
MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQRAREARL
RAAQQQEAA
>gi|223713594|gb|ACDM01000004.1| GENE    13      9057  -      9536    683    159 aa, chain + ## HITS:1  COG:ECs3086 KEGG:ns NR:ns ## COG: ECs3086 COG2332 # Protein_GI_number: 15832340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c-type biogenesis protein CcmE # Organism: Escherichia coli O157:H7 # 1     159       1     159     159     321  100.0  3e-88
MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRL
RVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNH
ILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS
>gi|223713594|gb|ACDM01000004.1| GENE    14      9533  -     11476   2372    647 aa, chain + ## HITS:1  COG:ccmF KEGG:ns NR:ns ## COG: ccmF COG1138 # Protein_GI_number: 16130133 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1     647       1     647     647    1144  100.0  0
MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA
FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD
IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG
YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV
SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESLLLANNVLLV
AAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
KIRNLLIIAFISTLVLSLLLPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT
TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN
WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW
AVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRKRVSPQKTAPEAV
>gi|223713594|gb|ACDM01000004.1| GENE    15     11473  -     12030    674    185 aa, chain + ## HITS:1  COG:ECs3084 KEGG:ns NR:ns ## COG: ECs3084 COG0526 # Protein_GI_number: 15832338 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1     185       1     185     185     378  100.0  1e-105
MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFY
QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELG
NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS
KEAAQ
>gi|223713594|gb|ACDM01000004.1| GENE    16     12027  -     13079   1226    350 aa, chain + ## HITS:1  COG:ccmH_2 KEGG:ns NR:ns ## COG: ccmH_2 COG4235 # Protein_GI_number: 16130131 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 130     350       1     221     221     430  100.0  1e-120
MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIAT
DLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVVAIGIGGWVIY
ARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIVAGVSYYQTGNYQQVKIWQQA
TAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALGNASI
ATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYA
FNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLSPQESK
>gi|223713594|gb|ACDM01000004.1| GENE    17     13290  -     13937    860    215 aa, chain - ## HITS:1  COG:ECs3082 KEGG:ns NR:ns ## COG: ECs3082 COG2197 # Protein_GI_number: 15832336 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     215       1     215     215     385   99.0  1e-107
MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDL
NMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAI
RAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNI
SEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ
>gi|223713594|gb|ACDM01000004.1| GENE    18     14257  -     16848   1676    863 aa, chain + ## HITS:1  COG:yejO KEGG:ns NR:ns ## COG: yejO COG3468 # Protein_GI_number: 16130127 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 28     863       1     836     836    1481   99.0  0
MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKIN
PGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQ
VYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAM
EVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVD
KKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHA
TMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSV
RGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADIT
TTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMA
NHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTY
EYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDT
AMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDR
GGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAH
VESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDL
QNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLS
VSYGNGAGVESPWNTQAGVVWTF
>gi|223713594|gb|ACDM01000004.1| GENE    19     17102  -     18862   1690    586 aa, chain - ## HITS:1  COG:ECs3080 KEGG:ns NR:ns ## COG: ECs3080 COG3083 # Protein_GI_number: 15832334 # Func_class: R General function prediction only # Function: Predicted hydrolase of alkaline phosphatase superfamily # Organism: Escherichia coli O157:H7 # 1     586       1     586     586    1172  100.0  0
MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGH
FSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVW
QLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIA
FIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD
AVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGN
TTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLS
DFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAA
GNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGT
PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITT
PKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN
>gi|223713594|gb|ACDM01000004.1| GENE    20     18882  -     19109    303     75 aa, chain - ## HITS:1  COG:ECs3079 KEGG:ns NR:ns ## COG: ECs3079 COG3082 # Protein_GI_number: 15832333 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      75       1      75      75     120  100.0  8e-28
MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANS
FARALQSSINEDKAH
>gi|223713594|gb|ACDM01000004.1| GENE    21     19291  -     20298   1290    335 aa, chain + ## HITS:1  COG:yejK KEGG:ns NR:ns ## COG: yejK COG3081 # Protein_GI_number: 16130124 # Func_class: R General function prediction only # Function: Nucleoid-associated protein # Organism: Escherichia coli K12 # 1     335       1     335     335     643  100.0  0
MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEE
SELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAV
LSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVAD
FFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEI
ELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAML
LGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN
>gi|223713594|gb|ACDM01000004.1| GENE    22     20437  -     20817    633    126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|26108973|gb|AAN81176.1|AE016763_135 50S ribosomal protein L25 [Escherichia coli CFT073] # 1     126       1     126     126 248  96 1e-64
MSIESRPLLHTQSRSLTCCWVACSRINLREKEMFTINAEVRKEQGKGASRRLRAANKFPA
IIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQH
IDFVRA
>gi|223713594|gb|ACDM01000004.1| GENE    23     20846  -     22606   1718    586 aa, chain - ## HITS:1  COG:yejH_1 KEGG:ns NR:ns ## COG: yejH_1 COG1061 # Protein_GI_number: 16130122 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Escherichia coli K12 # 1     358       1     358     358     730   99.0  0
MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH
RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD
CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH
IISQIMEFAAMRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP
HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG
HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS
LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA
ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG
>gi|223713594|gb|ACDM01000004.1| GENE    24     22632  -     22889     80     85 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|466200|sp|P28247|BICB_ECOLI ## NR: gi|466200|sp|P28247|BICB_ECOLI RecName: Full=Putative uncharacterized protein BicB # 1      85      83     167     167     182  100.0  5e-45
MFRKQFERCITDDFAIDGDTIAADFTPGNSTANAELLCDKFIKSHVCDFACKNGGRALTR
KSELLSAQYSGLITSLKGKRSMAYY
>gi|223713594|gb|ACDM01000004.1| GENE    25     22755  -     23450    799    231 aa, chain + ## HITS:1  COG:ECs3075 KEGG:ns NR:ns ## COG: ECs3075 COG1187 # Protein_GI_number: 15832329 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli O157:H7 # 1     231       1     231     231     469  100.0  1e-132
MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP
RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR
ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE
GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV
>gi|223713594|gb|ACDM01000004.1| GENE    26     23478  -     24668   1210    396 aa, chain + ## HITS:1  COG:ECs3074 KEGG:ns NR:ns ## COG: ECs3074 COG0477 # Protein_GI_number: 15832328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     396       1     396     396     652   99.0  0
MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFAL
GQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVIN
ALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAM
IFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVY
IEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISA
LLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGAL
LSLATFNSAWPMIWSIAFCATSSILFCLYASRPKKR
>gi|223713594|gb|ACDM01000004.1| GENE    27     25001  -     25345    228    114 aa, chain + ## HITS:1  COG:no KEGG:EC55989_2435 NR:ns ## KEGG: EC55989_2435 # Name: yejG # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     114       1     114     114     233  100.0  2e-60
MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVALKLLSPDGDNAWSVMYK
LSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNYNPF
>gi|223713594|gb|ACDM01000004.1| GENE    28     25349  -     26938    332    529 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 268     528       1     261     563 132  32 1e-29
MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP
SPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS
LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA
DEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNY
AATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNV
VVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPI
RHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRH
RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYL
FISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQEYTRQLLALS
>gi|223713594|gb|ACDM01000004.1| GENE    29     26940  -     27965   1089    341 aa, chain - ## HITS:1  COG:ECs3071 KEGG:ns NR:ns ## COG: ECs3071 COG4239 # Protein_GI_number: 15832325 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1     341       1     341     341     649   99.0  0
MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLL
KNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGATSINFATDKPFPSPPSRQ
NWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFI
EVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQA
LGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQG
KNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPNKAV
>gi|223713594|gb|ACDM01000004.1| GENE    30     27965  -     29059   1383    364 aa, chain - ## HITS:1  COG:ECs3070 KEGG:ns NR:ns ## COG: ECs3070 COG4174 # Protein_GI_number: 15832324 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1     364       1     364     364     685  100.0  0
MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRA
SHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLF
RSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAI
PAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF
AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFT
GSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRID
FEGR
>gi|223713594|gb|ACDM01000004.1| GENE    31     29060  -     30874   1540    604 aa, chain - ## HITS:1  COG:yejA KEGG:ns NR:ns ## COG: yejA COG4166 # Protein_GI_number: 16130115 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     604       3     606     606    1195  100.0  0
MIVRILLLFIALFTFGVQAQAIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSA
LGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAIN
PRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTVKAIAPLTVRIELAKPGKEDM
LSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSWKMGQNIVYSRVKDYWAANLPVN
RGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMENDAKNWATRYTGKNFDKKYIIKDEQK
NESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAA
RNYPDAAELVLLAPMKKDLPSEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQ
QRVNATTGQPLSFELLLPASSNSQWVLPFQHSLQRLGINMDIRKVDNSQITNRMRSRDYD
MMPRVWRAMPWPSSDLQISWSSEYINSTYNAPGVQSPVIDSLINQIIAAQGNKEKLLPLG
RALDRVLTWNYYMLPMWYMAEDRLAWWDKFSQPAVRPIYSLGIDTWWYDVNKAAKLPSAS
KQGE
>gi|223713594|gb|ACDM01000004.1| GENE    32     30956  -     32512   1167    518 aa, chain - ## HITS:1  COG:rtn_2 KEGG:ns NR:ns ## COG: rtn_2 COG2200 # Protein_GI_number: 16130114 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 261     518       1     258     258     531  100.0  1e-150
MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFAD
LKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNEL
IPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQE
DYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
LLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLR
WRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDH
LHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGT
GHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQ
ARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
>gi|223713594|gb|ACDM01000004.1| GENE    33     32693  -     33259    358    188 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 65     184      58     174     175 142  57 1e-32
MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVGSETSSLQASQDEFENL
VRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEM
GKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRYNE
ARRVLSRS
>gi|223713594|gb|ACDM01000004.1| GENE    34     33671  -     34384    491    237 aa, chain - ## HITS:1  COG:ECs3066 KEGG:ns NR:ns ## COG: ECs3066 COG0671 # Protein_GI_number: 15832320 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli O157:H7 # 1     237      13     249     249     437  100.0  1e-123
MIKNLPQIVLLNIVGLALFLSWYIPVNHGFWLPIDADIFYFFNQKLVESKAFLWLVALTN
NRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTAVVLNQLGQALIPVKRASP
TLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAFMWRYFGKVAGLIALIIFVVF
AFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDRLITFFDKSLPGKNKHFQNK
>gi|223713594|gb|ACDM01000004.1| GENE    35     34423  -     35409    668    328 aa, chain - ## HITS:1  COG:yeiR KEGG:ns NR:ns ## COG: yeiR COG0523 # Protein_GI_number: 16130111 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Escherichia coli K12 # 1     328       1     328     328     658  100.0  0
MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIP
GGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATL
CILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIH
SEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQA
CGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDS
RIELISSSEADWNALQSALLKLRLATTA
>gi|223713594|gb|ACDM01000004.1| GENE    36     35527  -     36993   1194    488 aa, chain - ## HITS:1  COG:yeiQ KEGG:ns NR:ns ## COG: yeiQ COG0246 # Protein_GI_number: 16130110 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1     488       1     488     488    1012  100.0  0
MNTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEI
SLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQV
AIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHSAPGILVEALKRRRERGLTPF
TVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLVEI
SQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHS
FLAYLGYLSGFAHISDCMQDRAFRHAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANP
ALKHKTWQIAMDGSQKLPQRMLAGIRIHQGRETDWSLLALGVAGWMRYVSGVDDAGNAID
VRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ
ALLNTLKI
>gi|223713594|gb|ACDM01000004.1| GENE    37     37216  -     37788    775    190 aa, chain - ## HITS:1  COG:ECs3063 KEGG:ns NR:ns ## COG: ECs3063 COG0231 # Protein_GI_number: 15832317 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Escherichia coli O157:H7 # 1     190      86     275     275     384  100.0  1e-107
MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDD
IVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTW
DGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLSTGLVIQVPEYLSPGEKIRIHI
EERRYMGRAD
>gi|223713594|gb|ACDM01000004.1| GENE    38     37943  -     38197    181     84 aa, chain + ## HITS:1  COG:YPO1286 KEGG:ns NR:ns ## COG: YPO1286 COG0727 # Protein_GI_number: 16121569 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster oxidoreductase # Organism: Yersinia pestis # 1      84       1      84      84     101   66.0  3e-22
MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKIFTSPLRPKVCAGLQAS
AEMCGNSRQQAMTWLIDLEMLTAP
>gi|223713594|gb|ACDM01000004.1| GENE    39     38194  -     39375   1040    393 aa, chain - ## HITS:1  COG:ECs3062 KEGG:ns NR:ns ## COG: ECs3062 COG0477 # Protein_GI_number: 15832316 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     393       1     393     393     693   99.0  0
MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGS
AVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS
TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA
VAFIVCGVMVWLFLPSMQKELPLATGTIEAPRRNRRDTLLLFVICTLMWGSNSLYIINMP
LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVGGVCFYAGML
MAHSPVILLGLQLLNAIFIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSVA
GIVAEIWNYHAVFWFAMVMIIATLFCLLRIKDV
>gi|223713594|gb|ACDM01000004.1| GENE    40     39743  -     40873   1436    376 aa, chain + ## HITS:1  COG:fruB_1 KEGG:ns NR:ns ## COG: fruB_1 COG4668 # Protein_GI_number: 16130107 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Escherichia coli K12 # 1     286       1     286     286     471  100.0  1e-132
MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGMLAREQQTSTFLGNGIAI
PHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAASSDEHLGLLRQLTHVLSDD
SVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIVASDLLTLQALNAARLKEAGA
VDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVSRAANAFDVDGETAAMLVSVAMN
DDQPIAVLKRLADLLLDNKADRLLKADAATLLALLTSDDAPTDDVLSAEFVVRNEHGLHA
RPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSLMKVVALGVKKGHRLRFTAQGADAEQA
LKAIGDAIAAGLGEGA
>gi|223713594|gb|ACDM01000004.1| GENE    41     40873  -     41811   1009    312 aa, chain + ## HITS:1  COG:ECs3060 KEGG:ns NR:ns ## COG: ECs3060 COG1105 # Protein_GI_number: 15832314 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Escherichia coli O157:H7 # 1     312       1     312     312     611  100.0  1e-175
MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGG
FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWER
FVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA
PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIA
KPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLA
AMMARVDLQPFN
>gi|223713594|gb|ACDM01000004.1| GENE    42     41828  -     43519   1998    563 aa, chain + ## HITS:1  COG:fruA_3 KEGG:ns NR:ns ## COG: fruA_3 COG1299 # Protein_GI_number: 16130105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 226     563       1     338     338     545  100.0  1e-154
MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMAIVLGDSIPNDSALNGK
NVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASGPKRVVAVTACPTGVAHTF
MAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAADLVIVAADIEVDLAKFAGKPM
YRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTESKKESAGAYRHLLTGVSYMLPM
VVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLT
PGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLISTQLKLPQSMEALKPILIIPLISSLVV
GLAMIYLIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKAAYAFGVG
LLSTQTYGPMAAIMAAGMVPPLAMGLATMVARRKFDKAQQEGGKAALVLGLCFISEGAIP
FAARDPMRVLPCCIVGGALTGAISMAIGAKLMAPHGGLFVLLIPGAITPVLGYLVAIIAG
TLVAGLAYAFLKRPEVDAVAKAA
>gi|223713594|gb|ACDM01000004.1| GENE    43     43942  -     44883    589    313 aa, chain + ## HITS:1  COG:yeiC KEGG:ns NR:ns ## COG: yeiC COG0524 # Protein_GI_number: 16130104 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1     313       1     313     313     618  100.0  1e-177
MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLL
SAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAI
TAEYLAQHGEFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCVKVRDRLNQ
IHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGW
SAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIA
NVISLVENAECLN
>gi|223713594|gb|ACDM01000004.1| GENE    44     44871  -     45809   1113    312 aa, chain + ## HITS:1  COG:ECs3057 KEGG:ns NR:ns ## COG: ECs3057 COG2313 # Protein_GI_number: 15832311 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme involved in pigment biosynthesis # Organism: Escherichia coli O157:H7 # 1     312       1     312     312     569   99.0  1e-162
MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGA
VPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIA
ALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLET
FGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMAVKWQSGLNGGLVVANPIPEQ
FAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILA
SEIAKEYQRLAG
>gi|223713594|gb|ACDM01000004.1| GENE    45     45903  -     47153   1542    416 aa, chain + ## HITS:1  COG:yeiM KEGG:ns NR:ns ## COG: yeiM COG1972 # Protein_GI_number: 16130102 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1     416       1     416     416     637  100.0  0
MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGGIMLYFPPGKWAVEQAA
LGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVLPAIIFVTALISLLYYIGV
MGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRMNRNELFTAICSG
MASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFARILSPATEPSQVTFENLSFSETP
PKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALINGIIGGIGGWFGFANASLESIFGY
VLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVAYLSFSPYLQTGGTLEVKTIAIISFAL
CGFANFGSIGVVVGAFSAISPKRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
>gi|223713594|gb|ACDM01000004.1| GENE    46     47224  -     47922    539    232 aa, chain - ## HITS:1  COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 14     232       1     219     219     446  100.0  1e-125
MKEIHNNDLKQQLMSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRA
RLYATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLN
DTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHTQAAEYLG
VSYRHLLYVLAQFIHDGLLIKSKKGYLIKNRKQLSGLALEMDPENKFSGMMQ
>gi|223713594|gb|ACDM01000004.1| GENE    47     48052  -     48993   1084    313 aa, chain + ## HITS:1  COG:yeiK KEGG:ns NR:ns ## COG: yeiK COG1957 # Protein_GI_number: 16130100 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1     313       1     313     313     632  100.0  0
MEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEIN
VPVYAGMPQPIMRQQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDIT
LVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTS
GVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHD
ATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWG
LVEECVRGYIKTH
>gi|223713594|gb|ACDM01000004.1| GENE    48     49093  -     50343   1355    416 aa, chain + ## HITS:1  COG:yeiJ KEGG:ns NR:ns ## COG: yeiJ COG1972 # Protein_GI_number: 16130099 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1     416       1     416     416     656  100.0  0
MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVA
FGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGV
MGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSG
MASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETP
PKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGY
LLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFAL
CGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
>gi|223713594|gb|ACDM01000004.1| GENE    49     50450  -     51538    740    362 aa, chain - ## HITS:1  COG:yeiI_2 KEGG:ns NR:ns ## COG: yeiI_2 COG0524 # Protein_GI_number: 16130098 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 54     362       1     309     309     633   99.0  0
MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYC
VVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDF
YGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQTVLAINDTHLLEQLTPQLLNG
SRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDTVSEFKAGKIKHWLVHIHTLKPT
LPELEILWGQAITSDADRNTAVNALHQQGVQQLFVYLPDESVYCSEKDGEQFLLTAPAHT
TVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVACAAISRASGSLNNPTLSADNALSLVP
MV
>gi|223713594|gb|ACDM01000004.1| GENE    50     51541  -     52398    868    285 aa, chain - ## HITS:1  COG:ECs3051 KEGG:ns NR:ns ## COG: ECs3051 COG0648 # Protein_GI_number: 15832305 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Escherichia coli O157:H7 # 1     285       1     285     285     582  100.0  1e-166
MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYH
YTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEE
DCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT
CHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIG
HDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQTEKAVA
>gi|223713594|gb|ACDM01000004.1| GENE    51     52472  -     53521   1236    349 aa, chain - ## HITS:1  COG:ECs3050 KEGG:ns NR:ns ## COG: ECs3050 COG2855 # Protein_GI_number: 15832304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     349       1     349     349     573  100.0  1e-163
MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNT
IYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLAC
FLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFL
YPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPF
LILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLA
MAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA
>gi|223713594|gb|ACDM01000004.1| GENE    52     53620  -     54501    204    293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3     241       1     243     305 83  26 7e-15
MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN
EHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPI
ELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARGPVTL
EQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRR
VIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR
>gi|223713594|gb|ACDM01000004.1| GENE    53     54706  -     56175   1922    489 aa, chain + ## HITS:1  COG:lysP KEGG:ns NR:ns ## COG: lysP COG0833 # Protein_GI_number: 16130094 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     489       1     489     489     911  100.0  0
MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGL
MVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLV
MSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIG
IFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR
AVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVM
NAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCF
LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLG
PIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSE
MKFPQNDKK
>gi|223713594|gb|ACDM01000004.1| GENE    54     56469  -     58460   2074    663 aa, chain + ## HITS:1  COG:cirA KEGG:ns NR:ns ## COG: cirA COG4771 # Protein_GI_number: 16130093 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli K12 # 1     663       1     663     663    1315  100.0  0
MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQ
RKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILVDGKRVNSRNAVFRHNDF
DLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHRDR
GDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVE
FAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVE
NKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEWRHDKLSDAVNLTGGTSSKTSAS
QYALFVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKA
PSLLQLSPDWTSNSCRGACKIVGSPDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRN
DVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVNKARIQGVETELKIPFN
DEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKR
ADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVD
YRF
>gi|223713594|gb|ACDM01000004.1| GENE    55     58492  -     59328    782    278 aa, chain - ## HITS:1  COG:yeiG KEGG:ns NR:ns ## COG: yeiG COG0627 # Protein_GI_number: 16130092 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1     278       1     278     278     556  100.0  1e-158
MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPPVLYWLSGLTCNDENFT
TKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGFYLNATQPPWATHYRMYDY
LRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWG
IKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLIDQGDNDQFLADQLQPAVLAEAAR
QKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK
>gi|223713594|gb|ACDM01000004.1| GENE    56     59586  -     60254    728    222 aa, chain + ## HITS:1  COG:ECs3045 KEGG:ns NR:ns ## COG: ECs3045 COG0302 # Protein_GI_number: 15832299 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Escherichia coli O157:H7 # 1     222       1     222     222     412  100.0  1e-115
MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSL
METPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDG
KATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH
YCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN
>gi|223713594|gb|ACDM01000004.1| GENE    57     60271  -     61428   1165    385 aa, chain + ## HITS:1  COG:Z3408 KEGG:ns NR:ns ## COG: Z3408 COG2311 # Protein_GI_number: 15802708 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 EDL933 # 1     385      44     428     428     665   98.0  0
MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVK
FLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWR
LVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGV
EAISYRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAI
GVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLA
IACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFR
QGPVEWLWRQLTLRAAGPAISKTSR
>gi|223713594|gb|ACDM01000004.1| GENE    58     61377  -     61580    105     67 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_2229 NR:ns ## KEGG: ECIAI1_2229 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      67       1      67      67     130  100.0  1e-29
MVIIFTTCYEIAVNDCLLAAILSALNTGLRESSHSNGNGYSRFVNECDPDRYLDVLDIAG
PAARKVN
>gi|223713594|gb|ACDM01000004.1| GENE    59     61570  -     62610   1001    346 aa, chain + ## HITS:1  COG:galS KEGG:ns NR:ns ## COG: galS COG1609 # Protein_GI_number: 16130089 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     346       1     346     346     662  100.0  0
MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSD
TIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALI
VHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIG
YLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGTPDMPGGEAAMVELLGRNLQLTA
VFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT
ELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM
>gi|223713594|gb|ACDM01000004.1| GENE    60     62890  -     63888   1382    332 aa, chain + ## HITS:1  COG:mglB KEGG:ns NR:ns ## COG: mglB COG1879 # Protein_GI_number: 16130088 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     332       1     332     332     587  100.0  1e-167
MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL
MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK
ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA
RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG
AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG
AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK
>gi|223713594|gb|ACDM01000004.1| GENE    61     63949  -     65469   1586    506 aa, chain + ## HITS:1  COG:mglA KEGG:ns NR:ns ## COG: mglA COG1129 # Protein_GI_number: 16130087 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Escherichia coli K12 # 1     506       1     506     506     998  100.0  0
MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF
GIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF
VDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL
TEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDK
IIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGA
KRTDIVETLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGF
NSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW
LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMS
NGLVSGIVDTKTTTQNEILRLASLHL
>gi|223713594|gb|ACDM01000004.1| GENE    62     65485  -     66495   1443    336 aa, chain + ## HITS:1  COG:mglC KEGG:ns NR:ns ## COG: mglC COG4211 # Protein_GI_number: 16130086 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type glucose/galactose transport system, permease component # Organism: Escherichia coli K12 # 1     336       1     336     336     486  100.0  1e-137
MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVA
GLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIG
LINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGS
FRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSGV
FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVIN
YGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARKK
>gi|223713594|gb|ACDM01000004.1| GENE    63     66738  -     67973   1310    411 aa, chain - ## HITS:1  COG:yeiA_1 KEGG:ns NR:ns ## COG: yeiA_1 COG0167 # Protein_GI_number: 16130085 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Escherichia coli K12 # 1     326       3     328     328     685  100.0  0
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPR
FDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELA
RLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIG
DMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALR
FIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGL
SHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQ
AMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL
>gi|223713594|gb|ACDM01000004.1| GENE    64     67967  -     69205    939    412 aa, chain - ## HITS:1  COG:yeiT KEGG:ns NR:ns ## COG: yeiT COG0493 # Protein_GI_number: 16130084 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 1     412       1     412     412     821  100.0  0
MPQQNYLDELTPAFTSLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAA
ETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPG
TKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLPQSVLDAE
IARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL
QRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFTS
ARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEPQR
NTIKTQNYQTRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEAIHHYLEGACSC
>gi|223713594|gb|ACDM01000004.1| GENE    65     69399  -     69638    236     79 aa, chain - ## HITS:1  COG:no KEGG:G2583_2688 NR:ns ## KEGG: G2583_2688 # Name: yeiS # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      79       1      79      79     135  100.0  6e-31
MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA
YIGFGILSIGMIVYLIFYR
>gi|223713594|gb|ACDM01000004.1| GENE    66     69641  -     70360    893    239 aa, chain - ## HITS:1  COG:ECs3036 KEGG:ns NR:ns ## COG: ECs3036 COG2949 # Protein_GI_number: 15832290 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     447  100.0  1e-126
MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTG
VINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY
AGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRI
REFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK
>gi|223713594|gb|ACDM01000004.1| GENE    67     70510  -     71394    882    294 aa, chain - ## HITS:1  COG:cdd KEGG:ns NR:ns ## COG: cdd COG0295 # Protein_GI_number: 16130081 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Escherichia coli K12 # 1     294       1     294     294     541  100.0  1e-154
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLA
AACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALA
AITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQ
DHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL
QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA
>gi|223713594|gb|ACDM01000004.1| GENE    68     71524  -     72219    758    231 aa, chain - ## HITS:1  COG:yohK KEGG:ns NR:ns ## COG: yohK COG1346 # Protein_GI_number: 16130080 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Escherichia coli K12 # 1     231       1     231     231     383  100.0  1e-106
MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSE
VLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIA
ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLA
MGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG
>gi|223713594|gb|ACDM01000004.1| GENE    69     72216  -     72614    394    132 aa, chain - ## HITS:1  COG:yohJ KEGG:ns NR:ns ## COG: yohJ COG1380 # Protein_GI_number: 16130079 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Escherichia coli K12 # 1     132       1     132     132     218  100.0  2e-57
MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGMLILFVLLALQILPAKWV
NPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAVSTLVVFLVVSWSSQLVHG
ERKVVGQKGSEE
>gi|223713594|gb|ACDM01000004.1| GENE    70     72853  -     73800    986    315 aa, chain + ## HITS:1  COG:yohI KEGG:ns NR:ns ## COG: yohI COG0042 # Protein_GI_number: 16130078 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli K12 # 1     315       1     315     315     644  100.0  0
MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP
SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY
QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH
IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN
EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS
PDIARAIQAIDIEKL
>gi|223713594|gb|ACDM01000004.1| GENE    71     74173  -     74256     65     27 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MKIILWAVLIIFLIGLLVVTGVFKMIF
>gi|223713594|gb|ACDM01000004.1| GENE    72     74480  -     75916   1205    478 aa, chain + ## HITS:1  COG:ECs3025 KEGG:ns NR:ns ## COG: ECs3025 COG1538 # Protein_GI_number: 15832279 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli O157:H7 # 1     478      28     505     505     876   99.0  0
MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKNGWPDSQWWL
EYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQDGPQIDFSADMERQKMSAE
GLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNRAEVTARLGTVKARAAEREQT
RQLLAGSVARLYWEWQTQAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINA
SKTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRAD
LQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLTLPI
FDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQIERDAL
RVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALGGGYKR
>gi|223713594|gb|ACDM01000004.1| GENE    73     75969  -     76730    204    253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 57     241      52     238     242 83  32 7e-15
MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLD
LGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQ
IAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNA
VAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVD
GGFMLANPQFNPE
>gi|223713594|gb|ACDM01000004.1| GENE    74     76860  -     77438    646    192 aa, chain - ## HITS:1  COG:yohD KEGG:ns NR:ns ## COG: yohD COG0586 # Protein_GI_number: 16130074 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli K12 # 1     192      13     204     204     333  100.0  9e-92
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
KRRGKKKPDHQA
>gi|223713594|gb|ACDM01000004.1| GENE    75     77608  -     78195    634    195 aa, chain + ## HITS:1  COG:no KEGG:APECO1_4414 NR:ns ## KEGG: APECO1_4414 # Name: yohC # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     195       9     203     203     338  100.0  9e-92
MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTI
LKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLS
GLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVL
LALTVILWGYGYRLF
>gi|223713594|gb|ACDM01000004.1| GENE    76     78408  -     79301   1074    297 aa, chain + ## HITS:1  COG:pbpG KEGG:ns NR:ns ## COG: pbpG COG1686 # Protein_GI_number: 16130072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli K12 # 1     297      17     313     313     507  100.0  1e-143
MLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMT
AMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLA
HHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQ
LSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPV
ALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND
>gi|223713594|gb|ACDM01000004.1| GENE    77     79339  -     81054   1625    571 aa, chain - ## HITS:1  COG:dld KEGG:ns NR:ns ## COG: dld COG0277 # Protein_GI_number: 16130071 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1     571       1     571     571    1173  100.0  0
MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWR
VLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYP
GTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARIN
EDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTP
ARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANF
ENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPH
FTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYFKQAEGDFF
VCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQ
LVHKLYYGHFMCYVFHQDYIVKKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLYKAPET
LQKFYRENDPTNSMNPGIGKTSKRKNWQEVE
>gi|223713594|gb|ACDM01000004.1| GENE    78     81250  -     83547   2869    765 aa, chain + ## HITS:1  COG:bglX KEGG:ns NR:ns ## COG: bglX COG1472 # Protein_GI_number: 16130070 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Escherichia coli K12 # 1     765       1     765     765    1510   99.0  0
MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVG
PDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVF
PISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYL
TSIMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPY
KAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTA
ADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFN
DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLA
DSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEA
VKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKA
TGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFP
RSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSA
PTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQT
VSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL
>gi|223713594|gb|ACDM01000004.1| GENE    79     83799  -     84716   1082    305 aa, chain + ## HITS:1  COG:ECs3018 KEGG:ns NR:ns ## COG: ECs3018 COG1732 # Protein_GI_number: 15832272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     554   99.0  1e-158
MPLSKVWAGSLVLLAAVSLPLHAASPVKVGSKIDTEGALLGNIILQVLESHGVPTVNKVQ
LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW
LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK
AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQ
PIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ
KGWTK
>gi|223713594|gb|ACDM01000004.1| GENE    80     84723  -     85880   1293    385 aa, chain + ## HITS:1  COG:ECs3017 KEGG:ns NR:ns ## COG: ECs3017 COG1174 # Protein_GI_number: 15832271 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Escherichia coli O157:H7 # 1     385       1     385     385     602   99.0  1e-172
MTYLRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQLWPQTIWMLVGVGCAWL
TACFIPAKKGSIFALILAQFVFVLLVWGAGKAATQLAQNGSALARTSLGSGFWLAAALAL
LACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDLSLMKEYANRQDVFDDALAQH
LTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNVIQTVPSVALFGLLIAPLAALVT
AFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVVGLNQIPRDVLESARAMGMSGAQRF
LHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIGAGGFGALVFQGLLSSAIDLVLLGVIP
VIVLAVLTDALFDLLIALLKVKRND
>gi|223713594|gb|ACDM01000004.1| GENE    81     85873  -     86799   1161    308 aa, chain + ## HITS:1  COG:yehX KEGG:ns NR:ns ## COG: yehX COG1125 # Protein_GI_number: 16130067 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Escherichia coli K12 # 1     308       1     308     308     580   98.0  1e-165
MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRF
AGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMAL
LGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRI
HRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSEL
GVRLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVMNTQGQPCGTLH
FQDLLEEA
>gi|223713594|gb|ACDM01000004.1| GENE    82     86804  -     87535    887    243 aa, chain + ## HITS:1  COG:ECs3015 KEGG:ns NR:ns ## COG: ECs3015 COG1174 # Protein_GI_number: 15832269 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Escherichia coli O157:H7 # 1     243       1     243     243     380  100.0  1e-105
MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGIS
SLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIA
LILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVI
INIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQ
HAK
>gi|223713594|gb|ACDM01000004.1| GENE    83     87516  -     87623    187     35 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
>gi|223713594|gb|ACDM01000004.1| GENE    84     87683  -     88414    650    243 aa, chain - ## HITS:1  COG:yehV KEGG:ns NR:ns ## COG: yehV COG0789 # Protein_GI_number: 16130065 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     243       1     243     243     466  100.0  1e-131
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNG
VQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHL
FIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWL
EGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFP
LGI
>gi|223713594|gb|ACDM01000004.1| GENE    85     88735  -     90321   1272    528 aa, chain + ## HITS:1  COG:yehU KEGG:ns NR:ns ## COG: yehU COG3275 # Protein_GI_number: 16130064 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Escherichia coli K12 # 1     528      34     561     561    1013  100.0  0
MQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGL
TGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMV
QMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATAL
KVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPI
SSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKN
RLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKA
VIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIA
IPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQP
VTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA
>gi|223713594|gb|ACDM01000004.1| GENE    86     90318  -     91037    897    239 aa, chain + ## HITS:1  COG:ECs2936 KEGG:ns NR:ns ## COG: ECs2936 COG3279 # Protein_GI_number: 15832190 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1     239       6     244     244     459  100.0  1e-129
MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI
SGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERS
KQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLR
TLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>gi|223713594|gb|ACDM01000004.1| GENE    87     91084  -     91554    448    156 aa, chain + ## HITS:1  COG:ECs2935 KEGG:ns NR:ns ## COG: ECs2935 COG4807 # Protein_GI_number: 15832189 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     300  100.0  7e-82
MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSF
LNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILAILTEQQFRVSMPEI
TAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS
>gi|223713594|gb|ACDM01000004.1| GENE    88     91595  -     92056    542    153 aa, chain - ## HITS:1  COG:ECs2934 KEGG:ns NR:ns ## COG: ECs2934 COG4808 # Protein_GI_number: 15832188 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     153       5     157     157     244   98.0  3e-65
MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETK
IQFASIGATTKEDAARALEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALHG
ISGINVSAEDAKKGITMAQMELVMKAAGFKEVK
>gi|223713594|gb|ACDM01000004.1| GENE    89     92181  -     94184   1123    667 aa, chain - ## HITS:1  COG:ECs2931 KEGG:ns NR:ns ## COG: ECs2931 COG2801 # Protein_GI_number: 15832185 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     667       1     667     745    1266   96.0  0
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLA
NGQALKEAQCTCGASGMCRHRVMLVLSYQRLCATAQPAEKEEEWDPAIWLEELATLPDAT
RKRAQALVAKGITIELFCTPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHIVLA
VQAFVEAKAQQAEFNHLIWQMRSEHVTSSDDPFASEEGQTCRQYVQQLSQALWLGGISQP
LIHYEAAFSRAQQAAERCNWRWVSESLRQLRASVDAFHARASHYHAGECLCQLAALNSRL
NCAHEMAQRDSVGEIPPMPWRTVVGAGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT
DPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR
NRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAVERMAALLQQTDDPVYLVSGFVS
FVDGQLTLEPQVMMTKTRAWALDAETAPVVVSLPSTSVLPVPSTAHQLLMRCQALLIQLL
HNGWRYQEQSAISQAELLANDLTAVGFYRLAHVLAQFRNTESEARVEAMNNGVLLCEQLF
PMLQQQG
>gi|223713594|gb|ACDM01000004.1| GENE    90     94181  -     95317    883    378 aa, chain - ## HITS:1  COG:no KEGG:JW5350 NR:ns ## KEGG: JW5350 # Name: yehP # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     378       1     378     378     739   99.0  0
MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEWLYGRDPERLQRGERSG
GLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVVTNLDVLERMQPSESLLRA
VLHTKHLMNPEVLATARRIVRQVVEEIMARLAKEVRQAFSGVRDRRRRSFIPLARNFDFK
STLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLVLLVDQSGSMVDSVIHSAVMAAC
LWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQLGGGTNIASAVEYGRQLIEQPAKS
VIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGLAALDSTATPCYDRDTAQALVNVGAQI
AAMTPGELASWLAENLQS
>gi|223713594|gb|ACDM01000004.1| GENE    91     95310  -     97589   1635    759 aa, chain - ## HITS:1  COG:no KEGG:EcolC_1528 NR:ns ## KEGG: EcolC_1528 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     759       1     759     759    1413   99.0  0
MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRVDELFLAHQLPVAIYSY
CQYQDGAAPGRGAWTPFAEFSPEWQALQAARCIQAQTYFIDLPCWAQSEEEDDSPDTQEE
SQTLLLRATRMDNSDTLWDHLFEDESQQIALPSALAHYFAQLRGDSPGDVLNRQREAFMT
RWIGWAMQQNDGDVLVVCGGWHAPALAKMWRECPQEINKPELPSLADAVTGCYLTPYSEK
RLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKTILTRLRQHKLPASTADMAAAHLHA
MALAQLRGHTLPLRTDWLDALAGSLIKEALNAPLPWSYRGVIHPDTDPILLTLIDTLAGD
GFGKLAPSTPQPPLPKDVTCELERTAISLPAELTLNRFNPNGLAQSQVLHRLAILEIPGI
VRQQGSTLTLAGNGEEHWKLTRPLSQHAALIEAACFGATLQEAARHKLEADMLDTGGIGS
ITTCLSQAALAGLASFSQQLLEQLTLLIAQENQFAEMGQALEVLYALWRLDEISGMQGAQ
ILQTTLCAAIDRTLWLCESNGRPDEKEFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAV
ALLERRSQAIHAPALDRGAALGALMRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALA
RHQLACQPAFIAGFSSHLNQLSDDDFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQ
LPVSALQMPLHCPPQAIAHHQQLEQQALASLQHWGVFHV
>gi|223713594|gb|ACDM01000004.1| GENE    92     97600  -     98688   1003    362 aa, chain - ## HITS:1  COG:ECs2927 KEGG:ns NR:ns ## COG: ECs2927 COG0714 # Protein_GI_number: 15832181 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Escherichia coli O157:H7 # 1     362      23     384     384     713   99.0  0
MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAARAFILGDSAQNISRKVV
ISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISGDAGLTIQGGASTTEDQIK
YGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITRTPLEVQDCLLGMLSDRVMTV
PELTSEASQLYAREGFNIIATANTRDRGVNEMSAALKRRFDFETVFPIMDFAQELELVAS
ASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEKKTSMDTLTAIMSTAEAVNVAHAVG
VRAWFLANRAGEPADLVDCIAGTIVKDNEEDRARLRRYFEQRVATHKEAHWQAYYQARHR
LP
>gi|223713594|gb|ACDM01000004.1| GENE    93     98995  -     99312    108    105 aa, chain - ## HITS:1  COG:no KEGG:EcolC_1530 NR:ns ## KEGG: EcolC_1530 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     105       1     105     105     192  100.0  3e-48
MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCPELFTGSVYRLERFRLHPTFHQRDREDAD
PLINDALIYIRDECNDERKLRGESPETVIAIFNRELQNIFNQEIE
>gi|223713594|gb|ACDM01000004.1| GENE    94     99373  -    103005   2644   1210 aa, chain - ## HITS:1  COG:no KEGG:EcolC_1531 NR:ns ## KEGG: EcolC_1531 # Name: not_defined # Def: putative regulator # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1    1210       1    1210    1210    2366   99.0  0
MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQTLGDELLQKAEKKKNI
VWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQNDSQQLLDEIVQQEGLEY
ATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQ
RCADKLIAALPGITKVRRPFIALILPEKPEIANELVGLECPRTHFHSKEWLKVVANDPTA
VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGSLL
VQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGYPIIE
DKKLPAQQKARDEYWRTLLQTLMASQPQLAAEVMPWLSTQPQSVLKSYLSAPPKPVIDGT
DNSNLPEILVSPPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATEPARYFSTESL
AQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLFVQWHYYQGRVEEILNGWN
SPEAQLAEQALRSGHIEALINIWENDNYSHYRPEKSVWNLYLLAQLPREMALTFWLRINE
KKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATELALPVAHVWRRFAAQ
RDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQGHGELLQTVANRWQRT
DVWSALEQLLKQDPMDIYPARIPKAPDFWHPAMWSRPRLITNNQPVTGDALEIIGEMLRF
TQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARD
LTTQILAWPQEGKSARAVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVA
ENRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPR
LRADDDQLKAPEALTRLKGLKKDATQVSKNLLPRLEAALRTTRRWSLADFHSLFVNHPFT
RLVTQRLIWGGYPANEPRRLLNAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMAVEM
RSEFAQLFADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWES
GYEDTFVYDLGEYRLVLKFSPGFNHYNVDSKALMSCRSLRVYRDNKSVTFAELDVFDLSE
ALSAPDVIFH
>gi|223713594|gb|ACDM01000004.1| GENE    95    103015  -    106809   2070   1264 aa, chain - ## HITS:1  COG:molR_g1_1 KEGG:ns NR:ns ## COG: molR_g1_1 COG3831 # Protein_GI_number: 16130053 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     112       1     112     112     206   98.0  2e-52
MRHFIYQDEKSHKFWAVEQQGNELHISWGKVGTKGQSQIKSFSDAAAAEKAELKLIAEKV
KKGYVEQAKDNSLQPSQTVTGSLKVADLSTIIQEQPSFVAETRAPDKNTDAVLPWLAKDI
AVVFPPEVVHTTLSHRRFPGVPVQQADKLTQLRRLACSVSQRDNKTATFDFSACSLEWQN
TVAQAISQIDGLKTTQLPSPVMAVLTALEMKCTRYKVREDVMDQIVQEGGLEYATDVIIH
LQQIDIEWDYANNVIIILPSGIAPSYLEQYSRFELRLRKHLSLTEESLWQKCAQKLIAAI
PHIPEWRQPLIALLLPEKPEIAHEIAQRLLGQKKLPSLEWLKIVATDEHILASLEKYHEP
YAIFDDYYCGAIWSATVLQEQGVAALPRFAPYAASDYCADVLRHINHPFALTLLIRVAGQ
TKRCHDRMTKAIAAFPHAAMAALTELLGQKEENSWRIMLMTMLISQPALAEQVIPWLSTP
AVAVLKSCQQQLTQPSNHASADLLPAVVVSPPWLSKKKKSPIPVLDLAPLGIEPICYLTE
EISNQLLAKYIWYSKHITVSHEESTTNLLARMGFQRRIAGTYIKAPEAVVEAWLNEDYST
LLSEFKVFHSPTGHYWQLGILTTLPLEKAVKAWNALTLSPHTDTEYSMLHFGLKGLPGLV
NSLARYPQEALPITNYFAASELAPAVARAFNKLKTLRENARSWLLKYPEHALTGLLPAAL
GKAGEAQDNARAALRMLTENGHQPLLQEIARRYNQPEVTDAVNALLALDPLDNHPTKIPT
LPAFYQPSLWTRPVLKANAQSLPDSALLHLGEMLRFPQEEALYPGLLQVKDVCSADSLAG
FAWDLFTAWQTAGAPSKESWAFTALGVLGNDDTARKLTPLIRAWPGESQHKRATVGLDIL
AAIGSDIALMQLNGIAQKLKFKALQERAKEKIADIAESRELTVAELEDRLAPDLGLDDNG
SLLLDFGPRQFTVSFDETLKPFVRDVSGSRLKDLPKPNKSDDETRANDAVNRYKLLKKDA
RTIAAQQVARLESAMCLRRRWSLENFQLFLVEHPLVRHLTRRLIWGVYSAENQLLACFRV
AEDNSSSTADDDLFTLPEGDISIGTPHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSY
ALTEAERNASELTRWAGRKCPSGRVMGLANKGWIKGEPQDGGWIGWMIKPLGRWSLIMEI
DEGFAVGMSPAELSAEQLLSKLWLWEGKAERYGWGSNSTQEAQFSVIDAITASELINDIE
ALFE
>gi|223713594|gb|ACDM01000004.1| GENE    96    106950  -    108983   2358    677 aa, chain - ## HITS:1  COG:ZmetG_1 KEGG:ns NR:ns ## COG: ZmetG_1 COG0143 # Protein_GI_number: 15802593 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Escherichia coli O157:H7 EDL933 # 1     567       1     567     567    1204   99.0  0
MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIM
LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFI
KNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSG
ATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFG
FEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY
FHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYY
TAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLANELADPQLYK
TFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSM
GINLFRVLMTYLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMKQV
EALVEASKEEVKAAAAPVTGPLADDPIQETITFDDFAKVDLRVALIENAEFVEGSDKLLR
LTLDLGGEKRNVFSGIRSAYPDPQALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKD
IFLLSPDAGAKPGHQVK
>gi|223713594|gb|ACDM01000004.1| GENE    97    109115  -    110224   1138    369 aa, chain + ## HITS:1  COG:ECs2919 KEGG:ns NR:ns ## COG: ECs2919 COG0489 # Protein_GI_number: 15832173 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Escherichia coli O157:H7 # 1     369      11     379     379     726  100.0  0
MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWH
SAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPGINGVKNIIAVSSGKGGVG
KSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLAT
NSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPV
TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEK
LAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQLYWQGEVI
PGEISFRAV
>gi|223713594|gb|ACDM01000004.1| GENE    98    110487  -    110768    162     93 aa, chain + ## HITS:1  COG:no KEGG:JW2099 NR:ns ## KEGG: JW2099 # Name: yehE # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      93       1      93      93     189  100.0  3e-47
MNKYWLSGIIFLAYGLASPAFSSETATLAINGRISPPTCSMAMVNGQPQQHCGQLTYNVD
TRHLFSSPVKGVTTEVVVAGSDSKRRIVLNRYD
>gi|223713594|gb|ACDM01000004.1| GENE    99    111061  -    111603    450    180 aa, chain + ## HITS:1  COG:yehD KEGG:ns NR:ns ## COG: yehD COG3539 # Protein_GI_number: 16130049 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     180       1     180     180     313   98.0  1e-85
MKRSIIAVAVFSSFFMSAGVFAADVDTGTLTIKGNIAQSPCKFEAGGDSVSINMPTVPTS
VFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYY
LYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD
>gi|223713594|gb|ACDM01000004.1| GENE   100    111683  -    112357    410    224 aa, chain + ## HITS:1  COG:yehC KEGG:ns NR:ns ## COG: yehC COG3121 # Protein_GI_number: 16130048 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     224      16     239     239     415  100.0  1e-116
MKGLLSLLIFSMVLPAHAGIVIYGTRIIYPAENKEVMVQLMNQGNRSSLLQAWIDDGDTS
LPPEKIQVPFMLTPPVAKIGANSGQQVKIKIMPNKLPTNKESIFYLNVLDIPPNSPEQEG
KNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLVNRSGNGLVIKNDSANWVTISDVKANN
VKVNYETIMIAPLESQSVNVKSNNANNWHLTIIDDHGNYISDKI
>gi|223713594|gb|ACDM01000004.1| GENE   101    112373  -    114853   1695    826 aa, chain + ## HITS:1  COG:yehB KEGG:ns NR:ns ## COG: yehB COG3188 # Protein_GI_number: 16130047 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     826       1     826     826    1625   99.0  0
MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDI
YVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDI
GVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYLSQYYSDYKASGNNKSTYVRF
NSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV
RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQ
LAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASKQSDFVQ
AGYQYGFNNLLTLYGGSMVANNYYAFTLGAGWNTRIGAISVDATKSHSKQDNGDVFDGQS
YQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDENDVYDIADYYQND
FGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSNNLRRISYTLAASQ
AYDENHHEEKRFNIFISIPFDWGDDVSTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSR
DQFNYGVNLSHQHQGNETTAGANLTWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGG
VNLANRLSETFAVMNAPGIKDAYVNGQKYRTTNRNGVVVYDGMTPYRENHLMLDVSQSDS
EAELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRTDGQPLTFGYEVNDIHGHNIGVV
GQGSQLFIRTNEVPPSVNVAIDKQQGLSCTITFGKEIDESRNYICQ
>gi|223713594|gb|ACDM01000004.1| GENE   102    115064  -    115903    355    279 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_2440 NR:ns ## KEGG: ECUMN_2440 # Name: yehA # Def: putative exported fimbrial-like adhesin protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     279      66     344     344     465   99.0  1e-130
MSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQTSFTSGYSVTVTPAASNAKVNVSAG
GGGSVMINGVATLSSASSSTRGSAAVQFLLCLFGGKSWDACVNSYRNALAQNAGVYSFNL
TLSYNPITTTCKPDDLLITLDSIPVSQLPAKGNKATINSNKGDIVLRCKNLLGQQNQTSR
KMQVYLSSSDLWGSSNTILKGAEDNGVGFILESNGSPVTLLNITNSSKGYTNLKEVAAKS
KLTDTTISIPITASYYVYDTNKVKSGALEATALINVKYD
>gi|223713594|gb|ACDM01000004.1| GENE   103    115985  -    116323    316    112 aa, chain - ## HITS:1  COG:yohN KEGG:ns NR:ns ## COG: yohN COG5455 # Protein_GI_number: 16130045 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1     112      61     172     172     207   98.0  5e-54
MTIKNKMLLGVLLLVTSAAWAAPATAGSTNTSGISKYELSSFIADFKHFKPGDTVPEMYR
TDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR
>gi|223713594|gb|ACDM01000004.1| GENE   104    116542  -    117366    601    274 aa, chain - ## HITS:1  COG:ZyohM KEGG:ns NR:ns ## COG: ZyohM COG2215 # Protein_GI_number: 15802585 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 EDL933 # 1     274       1     283     283     446   90.0  1e-125
MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAAT
ISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIIGTAFWMFWRTWRGERNWLENM
HEHDHEHHHHDHEDHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGL
TGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLASTLVTVGVGAAISVQQVAKRWS
GFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR
>gi|223713594|gb|ACDM01000004.1| GENE   105    117487  -    117759    401     90 aa, chain + ## HITS:1  COG:ECs2911 KEGG:ns NR:ns ## COG: ECs2911 COG1937 # Protein_GI_number: 15832165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      90       1      90      90     146  100.0  1e-35
MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGH
LTEHIVHQGDELKREEDLDVVLKVLDSYIK
>gi|223713594|gb|ACDM01000004.1| GENE   106    118063  -    118770    452    235 aa, chain + ## HITS:1  COG:ECs2907 KEGG:ns NR:ns ## COG: ECs2907 COG2145 # Protein_GI_number: 15832161 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Escherichia coli O157:H7 # 1     235      28     262     262     407   95.0  1e-114
MTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVE
QAKRSQTPWTLDPVAVGALDYRRCFCLELLSHKPTAIRGNASEIMALAGIANGGRGVDTT
DAAANAIPAAQTLARETGAIVVVTGEVDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVV
AACCALPGDMLENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTPEVQA
>gi|223713594|gb|ACDM01000004.1| GENE   107    118767  -    119567    654    266 aa, chain + ## HITS:1  COG:thiD KEGG:ns NR:ns ## COG: thiD COG0351 # Protein_GI_number: 16130041 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Escherichia coli K12 # 1     266       1     266     266     513   99.0  1e-145
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFV
AAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNVVLDTVMLAKSGDPLLSPS
AVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRSLLAMGCGAVLMKGGHL
DDEQSPDWLFTREGEQRFTAQRIMTKNTHGTGCTLSAALAALRPRHTNWADTVQEAKSWL
SSALAQADTLEVGHGIGPVHHFHAWW
>gi|223713594|gb|ACDM01000004.1| GENE   108    119632  -    120450    601    272 aa, chain + ## HITS:1  COG:yegX KEGG:ns NR:ns ## COG: yegX COG3757 # Protein_GI_number: 16130040 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli K12 # 1     272       4     275     275     541   96.0  1e-154
MQLRITSRKKFTALLCALGLISIVAIYPRQTVNFFYSTAIQIKDYIHFYGYRPVKSFAIR
IPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSR
ENGLLRGAYHYFSPSVSASVQARLFLQTVDFAHGDLPAVLDVEERGKLSAKELRKRVSQW
LKMVEKRTGKKPIIYSGAVFYHSNLAGYFNEYPWWVAHYYQRRPDNDGIAWRFWQHSDRG
QVDGINGPVDFNVFNGTVEELQAFVDGIKETP
>gi|223713594|gb|ACDM01000004.1| GENE   109    120502  -    121248    555    248 aa, chain + ## HITS:1  COG:ECs2904 KEGG:ns NR:ns ## COG: ECs2904 COG2188 # Protein_GI_number: 15832158 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     248       1     248     248     477  100.0  1e-135
MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVS
RITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKR
VVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESWVPAHLIHDVDAIGISLYDYF
RSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSD
LYVFVCEE
>gi|223713594|gb|ACDM01000004.1| GENE   110    121222  -    122187    879    321 aa, chain - ## HITS:1  COG:ECs2903 KEGG:ns NR:ns ## COG: ECs2903 COG0524 # Protein_GI_number: 15832157 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 1     321       1     321     321     626   97.0  1e-179
MSGARLHTLLPELATRQPVMVVGAAVIDVIADAYALPWRGCDIELKQQSVNVGGCALNIA
VALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAEGDNGWCLALVEPDGERTF
MSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGELLVEWLEELQDVTPFIDFGPR
IGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAEITTLGKQWQEKFAAPLIVRLDK
EGAWYFSNDASGCIPAYPTQVVDTIGAGDSHAGGVLAGLASGLPLADAVLLGNAVASWVV
GHRGGDCAPTREELLLAHKNV
>gi|223713594|gb|ACDM01000004.1| GENE   111    122184  -    123188    956    334 aa, chain - ## HITS:1  COG:yegU KEGG:ns NR:ns ## COG: yegU COG1397 # Protein_GI_number: 16130037 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Escherichia coli K12 # 1     334       1     334     334     640   99.0  0
MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPGPKENNAACYFNRAEFT
DDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKNVLGPTSKIALNAIRDGKP
VAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALASSPTHKSDLAVAGAVVIAWAI
SRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAARLEIALKIVRNADGIESASEQLY
QVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCANLGGDTDTIGAMATAICGALHGVNA
IDPALKTELDAVNQLDFNRYATALAKYRQQREAI
>gi|223713594|gb|ACDM01000004.1| GENE   112    123185  -    124462   1429    425 aa, chain - ## HITS:1  COG:ECs2901 KEGG:ns NR:ns ## COG: ECs2901 COG0477 # Protein_GI_number: 15832155 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     425       1     425     425     763   99.0  0
MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYACTAIAAILSPILVGSI
TDRFFSAQKVLAVLMFAGAALMYFAAQQTTFAGFFPLLLAYSLTYMPTIALTNSIAFANV
PDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYADISPTNIPLLITAGSSALLGVFAFF
LPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCSFLFAMPLAFYYIFANGYLTEVG
MKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLLLGLVTAAIRYGFFIYGSADEYFTY
ALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMRTAAQGLITLCCQGFGSLLGYRLGGVM
MEKMFAYQEPVNGLTFNWSGMWTFGAVMIAIIAVLFMIFFRESDNEITAIKVDDRDIALT
QGEVK
>gi|223713594|gb|ACDM01000004.1| GENE   113    124719  -    125771   1172    350 aa, chain + ## HITS:1  COG:ECs2900 KEGG:ns NR:ns ## COG: ECs2900 COG1830 # Protein_GI_number: 15832154 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli O157:H7 # 1     350      25     374     374     695  100.0  0
MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTG
RLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVS
RRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIE
EISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKM
AENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLS
DAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA
>gi|223713594|gb|ACDM01000004.1| GENE   114    125999  -    126853    698    284 aa, chain + ## HITS:1  COG:gatY KEGG:ns NR:ns ## COG: gatY COG0191 # Protein_GI_number: 16130034 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli K12 # 1     284       3     286     286     556   99.0  1e-158
MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAPVIIAGTPGTFTHAGTE
NLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVMIDASHLPFAQNISRVKEV
VDFCHRFDVSVEAELGQLGGQEDDVQVNEADALYTNPVQAREFAEATGIDSLAVAIGTAH
GMYASAPVLDFSRLENIRQWVNLPLVLHGASGLSTKDIQQTIKLGICKINVATELKNAFS
QALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIADCGCEGRA
>gi|223713594|gb|ACDM01000004.1| GENE   115    126882  -    128144    959    420 aa, chain + ## HITS:1  COG:gatZ KEGG:ns NR:ns ## COG: gatZ COG4573 # Protein_GI_number: 16130033 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted tagatose 6-phosphate kinase # Organism: Escherichia coli K12 # 1     420       1     420     420     849   98.0  0
MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMT
PADFREFVFAIADRVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKAYVRAGFSK
IHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEAS
AIQSVHITHVEDAANTLRTHQKAFIARGLAEALTRVIAIVVQPGVEFDHSNIIHYQPQEA
QPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQ
ELIAPENRSGCLAVIEEVMLDEPQYWKKYYRPGFNDSLLDIRYSLSDRIRYYWPHSRIKN
SVETMMVNLEGMEIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGCAE
>gi|223713594|gb|ACDM01000004.1| GENE   116    128154  -    128606    259    150 aa, chain + ## HITS:1  COG:ECs2897 KEGG:ns NR:ns ## COG: ECs2897 COG1762 # Protein_GI_number: 15832151 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1     150       1     150     150     292   99.0  1e-79
MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIAREAEFPTGIMLEQHAIAI
PHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVAVSLVIALIVENPQQQLKLLRCLFGKL
QQPEIVETLITLPETQLKEYFTKYVLDSDE
>gi|223713594|gb|ACDM01000004.1| GENE   117    128637  -    128921    335     94 aa, chain + ## HITS:1  COG:ECs2896 KEGG:ns NR:ns ## COG: ECs2896 COG3414 # Protein_GI_number: 15832150 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 1      94       1      94      94     179   98.0  1e-45
MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAKV
DRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG
>gi|223713594|gb|ACDM01000004.1| GENE   118    128925  -    130280   1718    451 aa, chain + ## HITS:1  COG:ECs2895 KEGG:ns NR:ns ## COG: ECs2895 COG3775 # Protein_GI_number: 15832149 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 # 1     451       1     451     451     804   99.0  0
MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIGIGFVGIGLVIGLMLDS
IGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPIAILVNVAMLLTRMTRVVN
VDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKLGDWFARDTRNFFELEGIAIP
HGTSAYLGPIAVLVDAIIEKIPGVNRIKFSADDIQRKFGPFGEPVTVGFVMGLIIGILAG
YDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAKQARSRLQAKFGGQEFLIGLDPALL
LGHTAVVSASLIFIPLTILIAVCVPGNQVLPFGDLATIGFFVAMAVAVHRGNLFRTLISG
VIIMSITLWIATQTIGLHTQLAANAGALKAGGMVASMDQGGSPITWLLIQVFSPQNIPGF
IIIGAIYLTGIFMTWRRARGFIKQEKAVLAE
>gi|223713594|gb|ACDM01000004.1| GENE   119    130328  -    131368    718    346 aa, chain + ## HITS:1  COG:ECs2894 KEGG:ns NR:ns ## COG: ECs2894 COG1063 # Protein_GI_number: 15832148 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1     346       1     346     346     706   98.0  0
MKSVVNDTDGIVRIAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHE
FSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEY
IVVKRKNVFALPTDMSIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCA
VALGAKSVTAIDISSEKLALAKSFGAMQTFNSLEMSAPQMQGVLRELRFNQLILETAGVP
QTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWE
TASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP
>gi|223713594|gb|ACDM01000004.1| GENE   120    131474  -    132247    514    257 aa, chain + ## HITS:1  COG:gatR KEGG:ns NR:ns ## COG: gatR COG1349 # Protein_GI_number: 16132228 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     257       3     259     259     454  100.0  1e-128
MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGVVTRFHGGAAKIM
SGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVILDSGSTTMLIAEGLMTAK
NITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGSIAERSLQDINADLMFVGADG
IDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVS
EVDKLALQKTRVKLITV
>gi|223713594|gb|ACDM01000004.1| GENE   121    132329  -    133228    633    299 aa, chain - ## HITS:1  COG:ECs2892 KEGG:ns NR:ns ## COG: ECs2892 COG1597 # Protein_GI_number: 15832146 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Escherichia coli O157:H7 # 1     299       1     299     299     593   99.0  1e-169
MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKLGVAT
VIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVRIPEALDKALKLAIAGD
AIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGGVSYIIHGLMRMDTLQPDRC
EIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLK
SDEDNPNIIEGASSWFDIQAPHEITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR
>gi|223713594|gb|ACDM01000004.1| GENE   122    133685  -    133960    195     91 aa, chain + ## HITS:1  COG:no KEGG:ECSE_2357 NR:ns ## KEGG: ECSE_2357 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      91      35     125     125     181  100.0  6e-45
MSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDAAHFC
VTQGKKMQIVDLKTEGAGLHGVARLTFKCGE
>gi|223713594|gb|ACDM01000004.1| GENE   123    134290  -    135651   1663    453 aa, chain - ## HITS:1  COG:ECs2889 KEGG:ns NR:ns ## COG: ECs2889 COG0826 # Protein_GI_number: 15832143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1     453       1     453     453     923   99.0  0
MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQLGINEAHALGK
KFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIMLVREHFPEMPIHLSVQAN
AVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDMEIEIFVHGALCMAYSGRCLLS
GYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKYEPIPVQNVEPTLGIGAPTDKVF
MIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVERLTKMGVHSLKIEGRTKSFYYCAR
TAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGYTEGFLRRHTHDDYQNYEYGYSVSDRQ
QFVGEFTGERKGDLAAVAVKNKFSVGDSLELMTPHGNINFTLEQMENAKGEAMPVAPGDG
YTVWIPVPQDLELNYALLMRNFSGETTRNPHGK
>gi|223713594|gb|ACDM01000004.1| GENE   124    135799  -    136131    373    110 aa, chain - ## HITS:1  COG:yegP KEGG:ns NR:ns ## COG: yegP COG3422 # Protein_GI_number: 16130020 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     110      14     123     123     169   99.0  9e-43
MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNSPQEERYEKKT
ASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
>gi|223713594|gb|ACDM01000004.1| GENE   125    136311  -    137033    831    240 aa, chain - ## HITS:1  COG:baeR KEGG:ns NR:ns ## COG: baeR COG0745 # Protein_GI_number: 16130019 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     240       1     240     240     464  100.0  1e-131
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL
DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR
VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF
SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV
>gi|223713594|gb|ACDM01000004.1| GENE   126    137030  -    138433   1310    467 aa, chain - ## HITS:1  COG:ECs2886 KEGG:ns NR:ns ## COG: ECs2886 COG0642 # Protein_GI_number: 15832140 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1     467       1     467     467     914  100.0  0
MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQRLQLLSDALGE
QYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHGWRTQFWVVDQNNKVLVGP
RAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFDKQQRQTSWLIVALATLLAAL
ATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDELGKLAQDFNQLASTLEKNQQM
RRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPETVASLQAEVGTLTKLVDDLHQLSM
SDEGALAYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLPDSITVFGDRDRLMQLFNN
LLENSLRYTDSGGSLKISAEQHDKTVRLTFADSAPGVSDDQLQKLFERFYRTEGSRNRAS
GGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERDLQREV
>gi|223713594|gb|ACDM01000004.1| GENE   127    138430  -    139845   1345    471 aa, chain - ## HITS:1  COG:ECs2885 KEGG:ns NR:ns ## COG: ECs2885 COG0477 # Protein_GI_number: 15832139 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     471       1     471     471     749   99.0  0
MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAV
MLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGR
LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA
TLMLMPNYTMQTRRFDLSGFLLLAIGMAVLTLALDGSKGTGLSPLAIAGLVAVGVVALVL
YLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG
LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALLGWYYVLPFVL
FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQH
VSIDSGTTQTVFMYTWLSMAFIIALPAFIFARVPNDTHQNVAISRRKRSAQ
>gi|223713594|gb|ACDM01000004.1| GENE   128    139846  -    142923   3222   1025 aa, chain - ## HITS:1  COG:yegO KEGG:ns NR:ns ## COG: yegO COG0841 # Protein_GI_number: 16130016 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1    1025       1    1025    1025    1868   99.0  0
MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMA
SSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLP
SGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVGGS
SLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTAAE
YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSI
RAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATI
IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKP
LQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLT
LTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKSLKWVLNHTRLVGVVLLGTIALN
IWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTG
GSRVNSGMMFITLKPRDERSETAQQIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNAS
YQYTLLSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDV
QAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSY
FAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAG
TAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNA
PFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLA
ALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPK
QTVTE
>gi|223713594|gb|ACDM01000004.1| GENE   129    142924  -    146046   3423   1040 aa, chain - ## HITS:1  COG:ECs2883 KEGG:ns NR:ns ## COG: ECs2883 COG0841 # Protein_GI_number: 15832137 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli O157:H7 # 1    1040       1    1040    1040    1803   99.0  0
MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLY
PGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAA
INAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG
VGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSA
NDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGA
NIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDTQFELMMAIALVVMIIYL
FLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENIS
RYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAI
LISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFERIIAAYGRGLAKVLNHPWLTL
SVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFTNMAQRQRQVADVILQDP
AVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQP
TQDLTIDTQVSRTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYV
NVDRDSASRLGINMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTI
RLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEK
TLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPT
AGVGALLALLIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQA
CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYL
LFDRLALWTKSRFARHEEEA
>gi|223713594|gb|ACDM01000004.1| GENE   130    146046  -    147293   1301    415 aa, chain - ## HITS:1  COG:yegM KEGG:ns NR:ns ## COG: yegM COG0845 # Protein_GI_number: 16130014 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1     415      50     464     464     715   99.0  0
MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQQSPAGGRRGMRSGPLA
PVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDP
SQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVSETEGTIK
ADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTL
PESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQD
DALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQDSQ
KVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTSEEKATSREYAKKGARS
>gi|223713594|gb|ACDM01000004.1| GENE   131    148837  -    149496    571    219 aa, chain + ## HITS:1  COG:ECs2881 KEGG:ns NR:ns ## COG: ECs2881 COG4245 # Protein_GI_number: 15832135 # Func_class: R General function prediction only # Function: Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain # Organism: Escherichia coli O157:H7 # 1     219       1     219     219     403   98.0  1e-112
MSEQIMFATSDFASNPEPRCPCILLLDVSGSMNGRPINELNAGLVTFRDELLADSLALKR
VELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITKALDMVEERKREYRANGIS
YYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIGVQGADMKTLAQISVRQPLPL
QGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTSV
>gi|223713594|gb|ACDM01000004.1| GENE   132    149574  -    150254    539    226 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_2410 NR:ns ## KEGG: ECUMN_2410 # Name: yegK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     226      28     253     253     437  100.0  1e-121
MQVAWLNDQQPLLSVFVADGAGSVSQGGEGAMLAVNEAMAYMSQKVQGGELGLNDVLATD
IVLTIRQRLFAEAEAKELAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLT
PMVGEYANMTHFITDEDAVSRLETFTSTERAHKVAAFTDGIQRLALNMLDNSPHVPFFTP
FFNGLASATQEQLDLLPELLKQFLSGPAVNERTDDDKTLALALWTE
>gi|223713594|gb|ACDM01000004.1| GENE   133    150319  -    150762    419    147 aa, chain - ## HITS:1  COG:yegJ KEGG:ns NR:ns ## COG: yegJ COG3779 # Protein_GI_number: 16130011 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     147       7     153     153     288   99.0  3e-78
MLSLLFFTTAGFSEVSDTLVTGGYDKQAMSDAIQHARKETDKFIEVMNKKDADTFAVKAP
ITDHGRTEHFWLTDVTYSNGMFIGVISNDPGIVTNVEYGQEWKIKKEDISDWMYTRGDKI
YGGYTIDPLLVTYPKEEADELRAKLVR
>gi|223713594|gb|ACDM01000004.1| GENE   134    150981  -    152927   1196    648 aa, chain + ## HITS:1  COG:yegI KEGG:ns NR:ns ## COG: yegI COG4248 # Protein_GI_number: 16130010 # Func_class: R General function prediction only # Function: Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains # Organism: Escherichia coli K12 # 1     648       1     648     648    1276   96.0  0
MKTNIKVFTSTGELTTLGRELGKGGEGAVYDIEEFVDSVAKIYHTPPPALKQDKLAFMAA
TADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYSPAHRRQSYPHCAWDFL
LYVARNIASSFATIHEHGHVVGDVNQNSFMVGRDSKVVLIDSDSFQINANGTLHLCEVGV
SHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGRHPYSGVPLISDAGNALETDI
AHFRYAYASDNQRRGLKPPPRSIPLSMLPGDVEAMFQQAFTESGVATGRPTAKAWVAALD
SLRQQLKKCTVSAMHVYPGHLTDCPWCALDNQGVIYFIDLGEEVITTGGDFVLAKVWAMV
MASVAPPALQLPLPDHFQAAGRPLPLGLLRREYIILIEIALSALSLLLCGLQAEPRYIIL
VPVLAAIWIIGSLTSKAYKAEIQQRREAFNRAKMDYDHLVSQIQQLGGLEGFIAKRTMLE
KMKDEILGLPEEEKRDLAALQDTARERQKQKFLEGFFIDVASIPGVGPARKVALRSFGIE
TAADVTRRSVKQVRGFGDHLTQAVIDWKASCERRFVFRPNEAVTPVDRQAVMAKMTAKRH
QLESALTVGATELQRFRLHAPARTMPLMEPLRQAAEKLAQAQADLSCC
>gi|223713594|gb|ACDM01000004.1| GENE   135    152940  -    154292   1591    450 aa, chain - ## HITS:1  COG:yegD KEGG:ns NR:ns ## COG: yegD COG0443 # Protein_GI_number: 16130009 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli K12 # 1     450      22     471     471     880   97.0  0
MFIGFDYGTANCSVAVMRDGKPQLLKMENDSTLLPSMLCAPTREAVSEWLYRHHDVPADD
DETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEEVWFVKSPKSFLGASGLKP
QQVALFEDLVCAMMLHIRQQAQAQLPDAITQAVIGRPINFQGLGGDEANTQAQGILERAA
KRAGFKDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDREA
SLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSDF
YSSANGRLLNDLVRDAREPDKVALLQKVWRQRLSYRLVRSAEESKIALSSVAETRASLPF
ISDELATLISQQGLESALNQPLARILEQVQLALDNAQEKPDVIYLTGGSARSPLIKKALA
EQLPGIPIAGGDDFGSVTAGLARWAEVVFR
>gi|223713594|gb|ACDM01000004.1| GENE   136    154426  -    155283    776    285 aa, chain + ## HITS:1  COG:alkA KEGG:ns NR:ns ## COG: alkA COG0122 # Protein_GI_number: 16130008 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Escherichia coli K12 # 1     280       1     280     282     549   97.0  1e-156
MYTLNWQPPYDWSWMLGFLAARAVNGVETVADDYYARSLAVGEYRGVVTAIPDIARHTLH
INLSAGLEPIAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGCVDAFEQGVRA
ILGQLVSVAMAAKLTARVAQLYGERLDDFPDYVCFPTPQRLAAADPQALKALGMPLKRAE
ALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL
IKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDGTDEL
>gi|223713594|gb|ACDM01000004.1| GENE   137    155321  -    158638   2794   1105 aa, chain - ## HITS:1  COG:Z3235m_2 KEGG:ns NR:ns ## COG: Z3235m_2 COG2202 # Protein_GI_number: 15804978 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Escherichia coli O157:H7 EDL933 # 301     670       1     370     370     772   99.0  0
MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRH
AGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQN
LVDWLRLALGSAIVPPLLGGVLVILLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPH
YLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFL
TTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISES
ETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDL
QQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRT
EQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVL
PEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDM
TEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPL
LTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG
SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNNTHQRHALVFID
LDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFI
ATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRV
TIYEPQQAATHSERAAISLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSCE
GEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKGLSIALPLSVAGLSSATLV
NELIEQLENSPLPPRLLHLIIPADAILDHAESVQKLRLAGCRIVFSQVGRDLQIFNSLKA
NMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVD
LIYGDVIADAQPLDLLVNSSYFAIN
>gi|223713594|gb|ACDM01000004.1| GENE   138    158956  -    159597    609    213 aa, chain + ## HITS:1  COG:ECs2873 KEGG:ns NR:ns ## COG: ECs2873 COG0572 # Protein_GI_number: 15832127 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Escherichia coli O157:H7 # 1     213      19     231     231     418  100.0  1e-117
MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE
RVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRMKETVTVEPKKVIILEGI
LLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFI
EPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>gi|223713594|gb|ACDM01000004.1| GENE   139    159689  -    160270    682    193 aa, chain + ## HITS:1  COG:ECs2872 KEGG:ns NR:ns ## COG: ECs2872 COG0717 # Protein_GI_number: 15832126 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Escherichia coli O157:H7 # 1     193       1     193     193     385  100.0  1e-107
MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDE
VSAALDRVMSDEIVLDESEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMV
HVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAARPYNRREDAKYR
NQQGAVASRIDKD
>gi|223713594|gb|ACDM01000004.1| GENE   140    160292  -    162145   1393    617 aa, chain + ## HITS:1  COG:asmA KEGG:ns NR:ns ## COG: asmA COG2982 # Protein_GI_number: 16130004 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Escherichia coli K12 # 1     617       1     617     617    1169   99.0  0
MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQ
LSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAV
RSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDP
QHRGSFEFSGRINRDQRDLTISLNGTVDASDYPHDLTAAIEQVNWQLQGADLPKQGIQGQ
GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEQPEWQLRLQFPQLNLDNLIPLN
ETANGENGTAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDV
ATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNY
PISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGD
VKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDI
RVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAER
NKDSRNGKDVKKLLEKM
>gi|223713594|gb|ACDM01000004.1| GENE   141    162597  -    164180   1912    527 aa, chain - ## HITS:1  COG:yegH_2 KEGG:ns NR:ns ## COG: yegH_2 COG1253 # Protein_GI_number: 16130003 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli K12 # 232     527       1     296     296     573   99.0  1e-163
MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRDRARVTGLLLAMLMRLL
LLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKATMELNERLEGKDSNNPTQR
KGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAAVVIAISLMLMASKPLTQFVN
SHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAIGFSVMIEALNQLAIFNRRRFLS
ANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVDHGNQQIFNPQERRMIERVLNLNQR
TVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHTRVVVTDGDDAEDLLGVVHVIDLLQQS
LRGEPLNLRVLIRQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTET
IAGNLPNEVEEIDARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLME
YLQRIPKPGEEVQVGDYLLKTLQVESHRVQKVQIIPLHKDGEMEYEV
>gi|223713594|gb|ACDM01000004.1| GENE   142    164923  -    165978   1074    351 aa, chain + ## HITS:1  COG:ECs2867 KEGG:ns NR:ns ## COG: ECs2867 COG1596 # Protein_GI_number: 15832121 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Escherichia coli O157:H7 # 1     351      29     379     379     696  100.0  0
MSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVG
PGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDI
TGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTA
DWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQST
LKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSL
VMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW
>gi|223713594|gb|ACDM01000004.1| GENE   143    165984  -    166427    470    147 aa, chain + ## HITS:1  COG:ECs2866 KEGG:ns NR:ns ## COG: ECs2866 COG0394 # Protein_GI_number: 15832120 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Escherichia coli O157:H7 # 1     147       1     147     147     296  100.0  1e-80
MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSL
EGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKS
RETFAAVYTLLERSARQWAQALNAEQV
>gi|223713594|gb|ACDM01000004.1| GENE   144    166430  -    168592   2516    720 aa, chain + ## HITS:1  COG:wzc_1 KEGG:ns NR:ns ## COG: wzc_1 COG3206 # Protein_GI_number: 16130000 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Escherichia coli K12 # 1     480      13     492     492     916   99.0  0
MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADA
LVQIEQSSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPI
FGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDDKNYTLSSDGGFSARGQAGQML
KKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDRE
QIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV
DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNG
RVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVL
KPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARD
SVKTIKGVKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGK
TFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS
IAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVG
TTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK
>gi|223713594|gb|ACDM01000004.1| GENE   145    168721  -    169560    722    279 aa, chain + ## HITS:1  COG:ECs2864 KEGG:ns NR:ns ## COG: ECs2864 COG0463 # Protein_GI_number: 15832118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 1     279       1     279     279     570   99.0  1e-162
MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDP
RITYIHNDINSGACAVRNQAITLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLY
ANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQVFTWAWRFKECLFDTELKAAQ
DYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKKFSGYFHFYRKHKDKFDRASK
KYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGIRGR
>gi|223713594|gb|ACDM01000004.1| GENE   146    169563  -    170051    503    162 aa, chain + ## HITS:1  COG:ECs2863 KEGG:ns NR:ns ## COG: ECs2863 COG1045 # Protein_GI_number: 15832117 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1     162       1     162     162     319   99.0  2e-87
MLEDLRANSWSLRPCCMVLAYRAAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEI
QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGAN
VIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK
>gi|223713594|gb|ACDM01000004.1| GENE   147    170048  -    171265   1149    405 aa, chain + ## HITS:1  COG:ECs2862 KEGG:ns NR:ns ## COG: ECs2862 COG0438 # Protein_GI_number: 15832116 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli O157:H7 # 1     405       1     405     405     854   99.0  0
MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTP
RMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKV
KNHKPDITLVWTLHDHWSVTGRCAFTDGCEGWKKGCQKCPTLNNYPPVKIDRAHQLVAGK
RQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILADLPPVRETQG
KPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKL
MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEEDVLQ
LVQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL
>gi|223713594|gb|ACDM01000004.1| GENE   148    171240  -    172457    883    405 aa, chain + ## HITS:1  COG:no KEGG:B21_01951 NR:ns ## KEGG: B21_01951 # Name: wcaD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     405       1     405     405     646  100.0  0
MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFLERISVKKLMIALG
IGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYL
VVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFF
ALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIK
KKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVV
RFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGD
NRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITR
>gi|223713594|gb|ACDM01000004.1| GENE   149    172468  -    173214    649    248 aa, chain + ## HITS:1  COG:ECs2860 KEGG:ns NR:ns ## COG: ECs2860 COG0463 # Protein_GI_number: 15832114 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 1     248       1     248     248     489   97.0  1e-138
MLLSIITVAFRNLAGIVKTHASLAHLAQADDISFEWIVVDGGSNDGTCEYLENLKGIYNL
RFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQDAANFVRKLKVQKDNVMITGDAL
LDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYK
AGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSK
TKALYNKS
>gi|223713594|gb|ACDM01000004.1| GENE   150    173230  -    173778    341    182 aa, chain + ## HITS:1  COG:wcaF KEGG:ns NR:ns ## COG: wcaF COG0110 # Protein_GI_number: 16129994 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1     182       1     182     182     363  100.0  1e-101
MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRAFLLRLFGAKIGKNVVI
RPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTI
NATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVE
TE
>gi|223713594|gb|ACDM01000004.1| GENE   151    173805  -    174926   1355    373 aa, chain + ## HITS:1  COG:ECs2858 KEGG:ns NR:ns ## COG: ECs2858 COG1089 # Protein_GI_number: 15832112 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Escherichia coli O157:H7 # 1     373       1     373     373     767  100.0  0
MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL
HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL
GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC
NGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM
LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKP
GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLL
KSHGYDVAIALES
>gi|223713594|gb|ACDM01000004.1| GENE   152    174929  -    175385    474    152 aa, chain + ## HITS:1  COG:wcaG KEGG:ns NR:ns ## COG: wcaG COG0451 # Protein_GI_number: 16129992 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1     152       1     152     321     311   98.0  4e-85
MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASESIDQVY
LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA
ESELLQGTLEPTNEPYAIAKIAGIKLCESYNR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:35:15 2011
 Seq name: gi|223713593|gb|ACDM01000005.1| Escherichia sp. 4_1_40B cont1.5, whole genome shotgun sequence 
 Length of sequence - 17430 bp
 Number of predicted genes - 14, with homology - 14
 Number of transcription units - 4, operones - 3 average op.length -  4.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   +    CDS        133 -      1356   1183  ## COG0438 Glycosyltransferase
     2     1 Op  2  11/0.000   +    CDS       1359 -      2795   1633  ## COG0836 Mannose-1-phosphate guanylyltransferase
                               +    Term      2849 -      2883    0.2 
     3     1 Op  3   4/0.000   +    CDS       2897 -      4267   1701  ## COG1109 Phosphomannomutase
     4     1 Op  4   7/0.000   +    CDS       4322 -      5716   1438  ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis
     5     1 Op  5   4/0.000   +    CDS       5718 -      7196   1883  ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid
     6     1 Op  6   7/0.000   +    CDS       7268 -      8548   1392  ## COG2327 Uncharacterized conserved protein
     7     1 Op  7     .       +    CDS       8545 -      9765   1056  ## COG0438 Glycosyltransferase
     8     1 Op  8     .       +    CDS       9776 -     11170   1064  ## EcolC_1598 putative colanic acid biosynthesis protein
                               +    Prom     11174 -     11233    2.5 
     9     2 Op  1   3/0.000   +    CDS      11328 -     12323    696  ## COG0451 Nucleoside-diphosphate-sugar epimerases
                               +    Term     12432 -     12471   -0.8 
                               +    Prom     12467 -     12526    3.2 
    10     2 Op  2     .       +    CDS      12566 -     13459    939  ## COG1210 UDP-glucose pyrophosphorylase
                               +    Prom     13484 -     13543    5.0 
    11     3 Tu  1     .       +    CDS      13769 -     14788    388  ## COG1087 UDP-glucose 4-epimerase
                               +    Prom     15444 -     15503    3.9 
    12     4 Op  1     .       +    CDS      15584 -     15823    195  ## E2348C_2181 predicted glycosyl transferase
    13     4 Op  2  14/0.000   +    CDS      15850 -     16971   1149  ## COG1089 GDP-D-mannose dehydratase
    14     4 Op  3     .       +    CDS      16974 -     17430    461  ## COG0451 Nucleoside-diphosphate-sugar epimerases
Predicted protein(s)
>gi|223713593|gb|ACDM01000005.1| GENE     1       133  -      1356   1183    407 aa, chain + ## HITS:1  COG:ECs2855 KEGG:ns NR:ns ## COG: ECs2855 COG0438 # Protein_GI_number: 15832109 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli O157:H7 # 1     407       1     407     407     805   99.0  0
MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKR
EEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCTP
GMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTI
SRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADVDVDALRNQLGLPDNKKIILYSGNI
GEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPA
LLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAHTELGQLCETFPGIAVCVE
PESVEALVAGICQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG
>gi|223713593|gb|ACDM01000005.1| GENE     2      1359  -      2795   1633    478 aa, chain + ## HITS:1  COG:ZcpsB_1 KEGG:ns NR:ns ## COG: ZcpsB_1 COG0836 # Protein_GI_number: 15802529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 EDL933 # 1     341       1     341     341     672   99.0  0
MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVIC
NEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADH
VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQ
FVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDLDLD
FIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCH
GDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGR
HEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT
IDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV
>gi|223713593|gb|ACDM01000005.1| GENE     3      2897  -      4267   1701    456 aa, chain + ## HITS:1  COG:ECs2853 KEGG:ns NR:ns ## COG: ECs2853 COG1109 # Protein_GI_number: 15832107 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli O157:H7 # 1     456       1     456     456     941   99.0  0
MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAK
GLQDAGVDVLDIGTSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGD
TGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNG
AAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADM
GIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAA
GGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGK
TLGELVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFN
LRSSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE
>gi|223713593|gb|ACDM01000005.1| GENE     4      4322  -      5716   1438    464 aa, chain + ## HITS:1  COG:wcaJ KEGG:ns NR:ns ## COG: wcaJ COG2148 # Protein_GI_number: 16129987 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Escherichia coli K12 # 1     464       1     464     464     959   99.0  0
MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQ
MLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYGLTS
IGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDP
KPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDV
FTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAV
KLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTS
LDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGE
TDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY
>gi|223713593|gb|ACDM01000005.1| GENE     5      5718  -      7196   1883    492 aa, chain + ## HITS:1  COG:wzxC KEGG:ns NR:ns ## COG: wzxC COG2244 # Protein_GI_number: 16129986 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1     492       1     492     492     845   98.0  0
MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDF
GIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLIGDVLNNPDLAPLIKTLSL
AFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNS
AVRTLLFGYFGRKIYCPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGA
GVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPA
LLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFN
VFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWL
PFYLSLPTLVISYALGIVLKGQMALGMLLAVQIAAGVLAFVVMIVLSRHPLVVEVKRQFC
RSEKMKMLLRAG
>gi|223713593|gb|ACDM01000005.1| GENE     6      7268  -      8548   1392    426 aa, chain + ## HITS:1  COG:wcaK KEGG:ns NR:ns ## COG: wcaK COG2327 # Protein_GI_number: 16129985 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     426       1     426     426     850   97.0  0
MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLF
LQMKQQNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDA
IIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDAL
ILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAIT
LRELAPFDKRLGTTQQAYEKAFAGVVNRTLDEGYQVIALSTCTGIDSYNKDDRMVALNLR
QHISDPARYHVVMDELNDLEMGKILGACQLTVGTRLHSAIISMNFSTPAIAINYEHKSAG
IMQQLGLPEMAIDIRHLLDGSLQAMVADTLGHLPALNARLSEAVSRERQMGMRMVQSVLE
RIGEAK
>gi|223713593|gb|ACDM01000005.1| GENE     7      8545  -      9765   1056    406 aa, chain + ## HITS:1  COG:wcaL KEGG:ns NR:ns ## COG: wcaL COG0438 # Protein_GI_number: 16129984 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1     406       1     406     406     798   99.0  0
MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAARTRW
LQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVSTPFYAD
VFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLP
ISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVA
IEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD
VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARAL
AQRLAAFSQLDTDELAPVVKRAREKVEHDFNQQVINRELASLLQAL
>gi|223713593|gb|ACDM01000005.1| GENE     8      9776  -     11170   1064    464 aa, chain + ## HITS:1  COG:no KEGG:EcolC_1598 NR:ns ## KEGG: EcolC_1598 # Name: wcaM # Def: putative colanic acid biosynthesis protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     464       1     464     464     904   98.0  0
MPFKKLSRRTFLTASSALAFLHTPFARAIPARQSVNINDYNPHDWIASFKQAFSEGQTVV
VPAGLVCDNINTGIFIPAGKTLHILGSLRGNGRGRFVLQDGSKVTGGEGGSIHNITLDVR
GSDCTIKGLVMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGAN
ITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYP
ENQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKARNITPDFSKKAGIDNATVAIYGC
DNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFRVNNIQLDNTHLAYKLRGIQISAGNA
VSFVALTNIEMKRASLELHNKPQHLFMRNIKVMQESSVGPALSMNFDMRKDVRGVFMAKK
ETLLSLANVHAVNEMGQSSVDIDRINHHIVNVEKINFRLPERRE
>gi|223713593|gb|ACDM01000005.1| GENE     9     11328  -     12323    696    331 aa, chain + ## HITS:1  COG:ECs2847 KEGG:ns NR:ns ## COG: ECs2847 COG0451 # Protein_GI_number: 15832101 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1     331       1     331     331     672   99.0  0
MNDNVLLIGASGFVGTRLLETAIADFNIKNLDKQQSHFYPEITQIGDVRDQQALDQALAG
FDTVVLLAAEHRDDVSPTSLYYDVNVQGTRNVLASMEKNGVKNIIFTSSVAVYGLNKHNP
DENHPHDPFNHYGKSKWQAEEVLREWYNKAPTERSLTIIRPTVIFGERNRGNVYNLLKQI
AGGKFMMVGAGTNYKSMAYVGNIVEFIKYKLKNVAAGYEVYNYVDKPDLNMNQLVAEVEQ
SLNKKIPSMHLPYPLGMLGGYCFDILSKITGKKYAVSSVRVKKFCATTQFDATKVHSSGF
VAPYTLSQGLDRTLQYEFVHAKKDDITFVSE
>gi|223713593|gb|ACDM01000005.1| GENE    10     12566  -     13459    939    297 aa, chain + ## HITS:1  COG:ECs2846 KEGG:ns NR:ns ## COG: ECs2846 COG1210 # Protein_GI_number: 15832100 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1     297       1     297     297     583   99.0  1e-166
MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASK
NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPA
IGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRTQVLAKRMPGDLSEYSVIQTK
EPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLSADIWPELERTQPGAWGRIQLTD
AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIEKLLSE
>gi|223713593|gb|ACDM01000005.1| GENE    11     13769  -     14788    388    339 aa, chain + ## HITS:1  COG:BS_galE KEGG:ns NR:ns ## COG: BS_galE COG1087 # Protein_GI_number: 16080937 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Bacillus subtilis # 1     338       1     336     339     398   56.0  1e-111
MVIFVTGGAGYIGSHTILELLNNGHDVVSIDNFVNSSIESLKRVEQITNKKIISYQGDIR
DKNLLDEIFSRHHIDAVIHFASLKSVGESKLKPLEYYSNNVGGTLVLLECMKRYNINKMI
FSSSATVYGSNSIPPHTEDRRIGETTNPYGTSKFIIEIILSDYCDSDNNKSVIALRYFNP
IGAHKSGMIGENPNGIPNNLVPYISKVAQNQLPVLNIYGNDYPTKDGTGVRDYIHVCDLA
KGHVKALEYMFLNDVNYEAFNLGTGQGYSVLEIVKMFEIVTKKSIPVAICNRREGDVAES
WASADLAHKKLSWKAEKNLKEMIEDVWRWQTNNPNGYKK
>gi|223713593|gb|ACDM01000005.1| GENE    12     15584  -     15823    195     79 aa, chain + ## HITS:1  COG:no KEGG:E2348C_2181 NR:ns ## KEGG: E2348C_2181 # Name: wbiN # Def: predicted glycosyl transferase # Organism: E.coli_0127 # Pathway: not_defined # 1      79     260     338     338     161  100.0  5e-39
MSGLEAHTAAIPLLLSDVGGCFELIEGNGLLVENTEDDIGYKLDKIFDDYENYREQAIRA
SGKFVIENYASAYKSIILG
>gi|223713593|gb|ACDM01000005.1| GENE    13     15850  -     16971   1149    373 aa, chain + ## HITS:1  COG:ECs2858 KEGG:ns NR:ns ## COG: ECs2858 COG1089 # Protein_GI_number: 15832112 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Escherichia coli O157:H7 # 1     373       1     373     373     747   96.0  0
MAKVALITGITGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL
HYGDLTDTSNLTRILCEVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL
GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC
NGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM
LQQEQPEDFVIATGVQYSVRQFVEMAAERVGIKLRFEGTGVDEKGIVVSVNGEDAPAVKP
GDVIVKVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLL
KSHGYDVAIALES
>gi|223713593|gb|ACDM01000005.1| GENE    14     16974  -     17430    461    152 aa, chain + ## HITS:1  COG:wcaG KEGG:ns NR:ns ## COG: wcaG COG0451 # Protein_GI_number: 16129992 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1     152       1     152     321     313   99.0  8e-86
MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVY
LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA
ESELLQGTLEPTNEPYAIAKIAGIKLCESYNR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:35:30 2011
 Seq name: gi|223713592|gb|ACDM01000006.1| Escherichia sp. 4_1_40B cont1.6, whole genome shotgun sequence 
 Length of sequence - 27688 bp
 Number of predicted genes - 26, with homology - 26
 Number of transcription units - 13, operones - 6 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        55 -       114    2.5 
     1     1 Op  1  11/0.000   +    CDS        150 -      1598    295  ## COG0836 Mannose-1-phosphate guanylyltransferase
     2     1 Op  2     .       +    CDS       1602 -      2990   1256  ## COG1109 Phosphomannomutase
                               +    Term      3030 -      3064    1.4 
     3     2 Tu  1     .       +    CDS       3685 -      4212   -144  ## gi|37528730|gb|AAO37715.1| O-antigen flippase
                               +    Prom      4423 -      4482   10.4 
     4     3 Tu  1     .       +    CDS       4719 -      4919    203  ## gi|37528731|gb|AAO37716.1| putative glycosyltransferase
                               +    Term      4920 -      4968   -0.8 
                               +    Prom      5363 -      5422    9.3 
     5     4 Op  1     .       +    CDS       5669 -      6169      4  ## gi|56159893|gb|AAV80757.1| O-antigen polymerase
     6     4 Op  2     .       +    CDS       6253 -      6996    109  ## COG0463 Glycosyltransferases involved in cell wall biogenesis
                               +    Prom      7308 -      7367    5.5 
     7     5 Tu  1     .       +    CDS       7587 -      7916    228  ## E2348C_2171 predicted fucosyltransferase
                               +    Prom      7925 -      7984    7.7 
     8     6 Op  1   4/0.000   +    CDS       8038 -      9444   1997  ## COG0362 6-phosphogluconate dehydrogenase
                               +    Term      9469 -      9509    4.1 
                               +    Prom      9513 -      9572    5.3 
     9     6 Op  2   2/0.500   +    CDS       9693 -     10859   1079  ## COG1004 Predicted UDP-glucose 6-dehydrogenase
                               +    Term     10870 -     10902    2.1 
                               +    Prom     10871 -     10930    3.5 
    10     7 Tu  1     .       +    CDS      11005 -     11985    976  ## COG3765 Chain length determinant protein
                               +    Term     12002 -     12048   10.0 
                               -    Term     11993 -     12032    5.1 
    11     8 Op  1  24/0.000   -    CDS      12082 -     12693    671  ## COG0139 Phosphoribosyl-AMP cyclohydrolase
    12     8 Op  2  23/0.000   -    CDS      12687 -     13463    924  ## COG0107 Imidazoleglycerol-phosphate synthase
    13     8 Op  3  25/0.000   -    CDS      13445 -     14182    878  ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
    14     8 Op  4  18/0.000   -    CDS      14182 -     14772    700  ## COG0118 Glutamine amidotransferase
    15     8 Op  5  13/0.000   -    CDS      14772 -     15839   1284  ## COG0131 Imidazoleglycerol-phosphate dehydratase
    16     8 Op  6  19/0.000   -    CDS      15839 -     16909   1148  ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
    17     8 Op  7  18/0.000   -    CDS      16906 -     18210   1212  ## COG0141 Histidinol dehydrogenase
    18     8 Op  8     .       -    CDS      18216 -     19115   1097  ## COG0040 ATP phosphoribosyltransferase
                               +    Prom     19653 -     19712    2.6 
    19     9 Op  1   2/0.500   +    CDS      19737 -     20561    815  ## COG0451 Nucleoside-diphosphate-sugar epimerases
    20     9 Op  2   4/0.000   +    CDS      20607 -     21536    801  ## COG0583 Transcriptional regulator
                               +    Term     21625 -     21657    2.3 
                               +    Prom     21545 -     21604    4.2 
    21     9 Op  3   2/0.500   +    CDS      21803 -     23161   1679  ## COG0531 Amino acid transporters
                               +    Term     23182 -     23221    7.5 
                               +    Prom     23169 -     23228    8.0 
    22    10 Op  1  10/0.000   +    CDS      23340 -     24398    801  ## COG2391 Predicted transporter component
    23    10 Op  2     .       +    CDS      24412 -     24639    325  ## COG0425 Predicted redox protein, regulator of disulfide bond formation
                               -    Term     24636 -     24675    5.8 
    24    11 Tu  1     .       -    CDS      24682 -     26106   1232  ## COG2925 Exonuclease I
                               -    Prom     26263 -     26322    3.3 
    25    12 Tu  1     .       +    CDS      26570 -     27466    208  ## COG0582 Integrase
                               +    Term     27578 -     27618    2.1 
                               -    Term     27181 -     27219   -0.6 
    26    13 Tu  1     .       -    CDS      27447 -     27638    131  ## ECH74115_2943 transcriptional regulator, AlpA family
Predicted protein(s)
>gi|223713592|gb|ACDM01000006.1| GENE     1       150  -      1598    295    482 aa, chain + ## HITS:1  COG:ECs2836_1 KEGG:ns NR:ns ## COG: ECs2836_1 COG0836 # Protein_GI_number: 15832090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 # 1     344       1     344     344     541   76.0  1e-154
MSDVPLIAVVMAGGTGSRLWPLSREHYPKQFLQLSGENTLLQSTLLRLSPLSCETPLVIT
NEQHRFVVAEQLRQINQLSDNIILEPCGRNTAPAIALSAFTALKRNEQQDPILLVLAADH
VINKTDVFCNAIKNSISIVEQGNILTFGIIPDYAETGYGYIEKGSIVKESQRGVGNTFYH
VEQFVEKPNRSRAEEYISSGKYLWNSGMFMFKASVYLEELKKYRPDIYDICEKTISSSYH
DLDFIRLSKDVFQNCPSESIDFAVMEKTKRCIVYPVDIGWNDVGSWQSLWDVSDKTPTGD
VCKGDILTYNTKNNYIHSESALVAAVGVEDIVIVQTKDAILVSKKSEVQDVKKIVQMLKM
QERSEYLSHREEFRPWGKFDAIEQGDRYKVKKIVVKPGEGLSLRMHHHRSEHWIVLSGTA
KVTLNNKTFLVTANESVYIPLGATYSLENPGIIPLNLIEVSSGDYLGEDDIVRQKERYKI
DD
>gi|223713592|gb|ACDM01000006.1| GENE     2      1602  -      2990   1256    462 aa, chain + ## HITS:1  COG:ECs2853 KEGG:ns NR:ns ## COG: ECs2853 COG1109 # Protein_GI_number: 15832107 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli O157:H7 # 1     455       1     455     456     882   93.0  0
MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAK
GLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGD
TGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNG
AAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADM
GIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLIWNTVDVVSAA
GGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGK
TLGELVRDRMAAFPASGEINSTLEDPLCAIARVESYYANKAIEIDRTDGISMTFNGWRFN
LRSSNTEPVVRLNVESRGDVAATKKYTGFILDLLNYKKSISS
>gi|223713592|gb|ACDM01000006.1| GENE     3      3685  -      4212   -144    175 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|37528730|gb|AAO37715.1| ## NR: gi|37528730|gb|AAO37715.1| O-antigen flippase [Escherichia coli] # 1     175     226     400     400     259  100.0  6e-68
MNMFAKFYGVVAFGVFSVYYRFVAFPQQVISFSSSLIWINFRQVHVNNRVAAMQLLKRLF
FIFTLLLIIWGGCVHFFIDKVVYLYSSKPLEYPGVLCFLNIMVCLMLLKDFSSIILNALT
LYKEQMIMNALLCLLNVIFFFFYNETNFDTIYLIFVSLLTLMFVFVNLSLIRSRL
>gi|223713592|gb|ACDM01000006.1| GENE     4      4719  -      4919    203     66 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|37528731|gb|AAO37716.1| ## NR: gi|37528731|gb|AAO37716.1| putative glycosyltransferase [Escherichia coli] # 1      66     169     234     234      95  100.0  1e-18
MTMADLKKNLIAKVHDESYLNYYYYYNKPLLLSELYSWPEKYGENKDAKIIMRDKERESW
YGNIKK
>gi|223713592|gb|ACDM01000006.1| GENE     5      5669  -      6169      4    166 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|56159893|gb|AAV80757.1| ## NR: gi|56159893|gb|AAV80757.1| O-antigen polymerase [Escherichia coli] # 1     166     277     442     466     276   99.0  4e-73
MLLVAILVTTISSLILNYRIGIEVNSGLLGIIFNPLLQQGASFETVYGALKYNEKILSCI
SYYDYFFTNKDIGSCIDIARGVYFKEGGSFASSFYSELIYLGWIIGSVALLLFAFSLAFV
QSCYEKIIKNSMNNKLAYTYRLIIFLALPNLIYFARSSLFDFITKV
>gi|223713592|gb|ACDM01000006.1| GENE     6      6253  -      6996    109    247 aa, chain + ## HITS:1  COG:CAC2173 KEGG:ns NR:ns ## COG: CAC2173 COG0463 # Protein_GI_number: 15895442 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 2     216       4     223     333     136   37.0  4e-32
MISVIMAVHRYDKYVDISIDSILNQTYSDFELIIIANGGDCFEIAKQLKHYTELDNRVKI
YTLEIGQLSFALNYAVTKCKYSIIARMDSDDVSLPLRLEKQYMYMLQNDLEMVGTGIRLI
NENGEFIKELKYPNHNKINKILPFKNCFAHPTLMFKKDVILKQRGYCGGFNSEDYDLWLR
ILNECPNIRWDNLSECLLNYRIHNKSTQKSALAYYECASYSLREFLKKRTITNFLSCLYH
FCKALIK
>gi|223713592|gb|ACDM01000006.1| GENE     7      7587  -      7916    228    109 aa, chain + ## HITS:1  COG:no KEGG:E2348C_2171 NR:ns ## KEGG: E2348C_2171 # Name: wbiQ # Def: predicted fucosyltransferase # Organism: E.coli_0127 # Pathway: not_defined # 1     109     191     299     299     120   51.0  2e-26
MDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSECEYSAIDMFLMSK
CKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWINL
>gi|223713592|gb|ACDM01000006.1| GENE     8      8038  -      9444   1997    468 aa, chain + ## HITS:1  COG:gnd KEGG:ns NR:ns ## COG: gnd COG0362 # Protein_GI_number: 16129970 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Escherichia coli K12 # 1     468       1     468     468     919   99.0  0
MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF
VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF
NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH
YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQTFTEWNNGELSSYLIDITKDIFT
KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS
KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWALNYGEIAKIF
RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT
FAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD
>gi|223713592|gb|ACDM01000006.1| GENE     9      9693  -     10859   1079    388 aa, chain + ## HITS:1  COG:ECs2829 KEGG:ns NR:ns ## COG: ECs2829 COG1004 # Protein_GI_number: 15832083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Escherichia coli O157:H7 # 1     388       1     388     388     754   99.0  0
MKITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDEIH
FNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP
VGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIK
QNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGN
HYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAIVDANRTRKDFIADAILSRKPQVVG
IYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQA
DVIISNRMAEELRDVADKVYTRDLFGSD
>gi|223713592|gb|ACDM01000006.1| GENE    10     11005  -     11985    976    326 aa, chain + ## HITS:1  COG:wzzB KEGG:ns NR:ns ## COG: wzzB COG3765 # Protein_GI_number: 16129968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli K12 # 1     326      13     338     338     556   97.0  1e-158
MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIVLAIGYLAVAKEKWTSTA
IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLT
IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD
SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM
IKHEATRPLVFSSNYYQTRQNLLDIDNLDVDKLDIHAYLYVMKPTLPIRRDSPKKAITLI
LAVLLGGMVGAGIVLGRNALRNYNAK
>gi|223713592|gb|ACDM01000006.1| GENE    11     12082  -     12693    671    203 aa, chain - ## HITS:1  COG:ZhisI_1 KEGG:ns NR:ns ## COG: ZhisI_1 COG0139 # Protein_GI_number: 15802505 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Escherichia coli O157:H7 EDL933 # 1     112       1     112     112     234   97.0  8e-62
MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTIESGKVTFFSRTKQR
LWTKGETSGNFLNVVNITPDCDNDTLLLLANPIGPTCHKGTSSCFGDTTHQWLFLYQLEQ
LLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHL
LVLLQDQDLDLTTVIENLRKRHQ
>gi|223713592|gb|ACDM01000006.1| GENE    12     12687  -     13463    924    258 aa, chain - ## HITS:1  COG:ECs2826 KEGG:ns NR:ns ## COG: ECs2826 COG0107 # Protein_GI_number: 15832080 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     258       1     258     258     519  100.0  1e-147
MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRV
VDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRF
GVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMN
QDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN
IGELKAYLATQGVEIRIC
>gi|223713592|gb|ACDM01000006.1| GENE    13     13445  -     14182    878    245 aa, chain - ## HITS:1  COG:ECs2825 KEGG:ns NR:ns ## COG: ECs2825 COG0106 # Protein_GI_number: 15832079 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Escherichia coli O157:H7 # 1     245       2     246     246     462   98.0  1e-130
MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKR
QIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSPDMVKGWFERFG
ADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLA
GSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTGVRGVIVGRALLEGKFTVKEAIA
CWQNA
>gi|223713592|gb|ACDM01000006.1| GENE    14     14182  -     14772    700    196 aa, chain - ## HITS:1  COG:hisH KEGG:ns NR:ns ## COG: hisH COG0118 # Protein_GI_number: 16129964 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Escherichia coli K12 # 1     196       1     196     196     417  100.0  1e-117
MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRER
ELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR
VYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQKDNFYGVQFHPE
RSGAAGAKLLKNFLEM
>gi|223713592|gb|ACDM01000006.1| GENE    15     14772  -     15839   1284    355 aa, chain - ## HITS:1  COG:hisB_2 KEGG:ns NR:ns ## COG: hisB_2 COG0131 # Protein_GI_number: 16129963 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Escherichia coli K12 # 149     355       1     207     207     431   99.0  1e-121
MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQKAGYKLVMITNQDGLG
TQSFPQADFEGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAM
DRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGEQLTKRDRYAHVVRNTKETQI
DVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEINVKGDLYIDDHHTVEDTGLALG
EALKIALGDKRGICRFGFVLPMDECLARCALDISGRPHLEYKAEFTYQRVGDLSTEMIEH
FFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGDTLPSSKGVL
>gi|223713592|gb|ACDM01000006.1| GENE    16     15839  -     16909   1148    356 aa, chain - ## HITS:1  COG:hisC KEGG:ns NR:ns ## COG: hisC COG0079 # Protein_GI_number: 16129962 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Escherichia coli K12 # 1     356       1     356     356     706   99.0  0
MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLNRYPECQP
KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI
GVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDLRTLLELTRGKAI
VVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVI
APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEISCVEQVFDSETNYI
LARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALRAEQV
>gi|223713592|gb|ACDM01000006.1| GENE    17     16906  -     18210   1212    434 aa, chain - ## HITS:1  COG:ECs2821 KEGG:ns NR:ns ## COG: ECs2821 COG0141 # Protein_GI_number: 15832075 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Escherichia coli O157:H7 # 1     434       1     434     434     782   98.0  0
MSFNTIIDWNSCTAKQQRQLLMRPAISASESITRTVNDILDSVKARGDDALREYSAKFDK
ATVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQV
TRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLCSPPPIADEILYAAQLCGVQD
VFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVL
VIADSGATPDFVASDLLSQAEHGPDSQVILLTPDADMARRVAEAVERQLAELPRAETARQ
ALSASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDGITSAGSVFLGDWSPESAGD
YASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLASAERLTAHK
NAVTLRVNALKEQA
>gi|223713592|gb|ACDM01000006.1| GENE    18     18216  -     19115   1097    299 aa, chain - ## HITS:1  COG:hisG KEGG:ns NR:ns ## COG: hisG COG0040 # Protein_GI_number: 16129960 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Escherichia coli K12 # 1     299       1     299     299     574  100.0  1e-164
MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPG
LVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPL
SLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEAN
GLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAPTERLDE
VIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>gi|223713592|gb|ACDM01000006.1| GENE    19     19737  -     20561    815    274 aa, chain + ## HITS:1  COG:ECs2818 KEGG:ns NR:ns ## COG: ECs2818 COG0451 # Protein_GI_number: 15832072 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1     274       1     274     274     528  100.0  1e-150
MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDS
DDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQ
GTVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTAPD
GEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN
SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE
>gi|223713592|gb|ACDM01000006.1| GENE    20     20607  -     21536    801    309 aa, chain + ## HITS:1  COG:ECs2817 KEGG:ns NR:ns ## COG: ECs2817 COG0583 # Protein_GI_number: 15832071 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     309       8     316     316     614   99.0  1e-176
MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT
RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHS
VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLA
QEEEPLNRRIIKQYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGY
LPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASAWWRDEILANSAIAGVYA
KSDDGKSAI
>gi|223713592|gb|ACDM01000006.1| GENE    21     21803  -     23161   1679    452 aa, chain + ## HITS:1  COG:ECs2816 KEGG:ns NR:ns ## COG: ECs2816 COG0531 # Protein_GI_number: 15832070 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1     452       3     454     454     816  100.0  0
MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALI
AILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKIY
FEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIVVLQVVLIAVILGMVVYGVFE
GEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFL
TALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTITVLAS
GMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWRTPAMNIILVGAIALLAINFDLVMATA
LINFGALVAFTFVNLSVISQFWIREKRNKTLKDHFQYLFLPMCGALTVGALWVNLEESSM
VLGLIWAAIGLIYLACVTKSFRNPVPQYEDVA
>gi|223713592|gb|ACDM01000006.1| GENE    22     23340  -     24398    801    352 aa, chain + ## HITS:1  COG:ECs2815 KEGG:ns NR:ns ## COG: ECs2815 COG2391 # Protein_GI_number: 15832069 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli O157:H7 # 1     352       1     352     352     621   98.0  1e-178
MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYVAKNNRMFYALLIAISVQSVGVFALI
QAGLLTYEAGAFPWLGTVIGGYLFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMS
AVMRSPHASGLNQTLQHYTTEHNSIADTFNLSVWPLVAVLLVITLWVVMKELKKPKLKVA
TLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFL
VAGDVKYINWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAG
GCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN
>gi|223713592|gb|ACDM01000006.1| GENE    23     24412  -     24639    325     75 aa, chain + ## HITS:1  COG:ECs2814 KEGG:ns NR:ns ## COG: ECs2814 COG0425 # Protein_GI_number: 15832068 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1      75       1      75      75     124  100.0  6e-29
MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATEAIPQWAAEEGHAITDY
QQIGDAAWSITVQKA
>gi|223713592|gb|ACDM01000006.1| GENE    24     24682  -     26106   1232    474 aa, chain - ## HITS:1  COG:sbcB KEGG:ns NR:ns ## COG: sbcB COG2925 # Protein_GI_number: 16129952 # Func_class: L Replication, recombination and repair # Function: Exonuclease I # Organism: Escherichia coli K12 # 1     474       2     475     475     959   97.0  0
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQP
GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY
DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV
HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
AEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV
>gi|223713592|gb|ACDM01000006.1| GENE    25     26570  -     27466    208    298 aa, chain + ## HITS:1  COG:STM2636 KEGG:ns NR:ns ## COG: STM2636 COG0582 # Protein_GI_number: 16765956 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 43     282     137     385     409     145   34.0  1e-34
MTVAQCLDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEE
RDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIW
LAIERSRASTSNKLLHQMLMLWGARLSELRLAKKTEFDLLENVWTVPKEHSKMGNVIRRP
IFEQIKPFLEKAMTTYNDVLFPGEDISKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTL
VTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKVYELHADKLFWHIRSISD
>gi|223713592|gb|ACDM01000006.1| GENE    26     27447  -     27638    131     63 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_2943 NR:ns ## KEGG: ECH74115_2943 # Name: not_defined # Def: transcriptional regulator, AlpA family # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      63       1      63      63     126  100.0  3e-28
MTDTSLIPEKEVMNKLGVSSRQTIWNYTKRHGFPKPVRTHPKSYLREAVEGWILNGGVNQ
KCS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:35:56 2011
 Seq name: gi|223713591|gb|ACDM01000007.1| Escherichia sp. 4_1_40B cont1.7, whole genome shotgun sequence 
 Length of sequence - 1783 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 2, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          6 -       368    189  ## EFER_0574 conserved hypothetical protein; CPS-53 (KpLE1) prophage
     2     1 Op  2     .       -    CDS        359 -       895    382  ## COG1896 Predicted hydrolases of HD superfamily
                               +    Prom      1325 -      1384    4.6 
     3     2 Tu  1     .       +    CDS       1409 -      1696     92  ## SeD_A2291 hypothetical protein
                               +    Term      1736 -      1767   -0.1 
Predicted protein(s)
>gi|223713591|gb|ACDM01000007.1| GENE     1         6  -       368    189    120 aa, chain - ## HITS:1  COG:no KEGG:EFER_0574 NR:ns ## KEGG: EFER_0574 # Name: yfdS # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.fergusonii # Pathway: not_defined # 1     120       1     120     120     226   96.0  3e-58
MRMNVFEMEGFLRGRCVPRDLKVNETDAEYLARKFDALEAKCAAQENKVIPVSAELPPAN
ESVLLFDANGEGWLIGWRSLWYTWEQKETGEWQWTFQVGDLENVNITHWAIMPKAPEAGA
>gi|223713591|gb|ACDM01000007.1| GENE     2       359  -       895    382    178 aa, chain - ## HITS:1  COG:yfdR KEGG:ns NR:ns ## COG: yfdR COG1896 # Protein_GI_number: 16130293 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1     178      10     187     187     363   97.0  1e-100
MSFIKTFSGKHFYYDRINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ
EFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADL
IMLATERRDLGLDDGSFWPVLEGIPATEMFKVIPQAPGHAYGMFMERFNELSELRKCA
>gi|223713591|gb|ACDM01000007.1| GENE     3      1409  -      1696     92     95 aa, chain + ## HITS:1  COG:no KEGG:SeD_A2291 NR:ns ## KEGG: SeD_A2291 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Dublin # Pathway: not_defined # 1      67       1      67      81     130  100.0  1e-29
MTFDEKELDNAINKIIVTSLFSCLSDTQQKQFYESAFNMIERCCFCDADELPEKIRKQLA
DALRVRLYAVNLFVAGMTDVVWMPGDNYYLHRGMQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:36:04 2011
 Seq name: gi|223713590|gb|ACDM01000008.1| Escherichia sp. 4_1_40B cont1.8, whole genome shotgun sequence 
 Length of sequence - 14992 bp
 Number of predicted genes - 14, with homology - 14
 Number of transcription units - 6, operones - 4 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        250 -       735   -133  ## gi|256022303|ref|ZP_05436168.1| hypothetical protein E4_02919
                               -    Prom       791 -       850    7.8 
                               +    Prom      2558 -      2617    3.9 
     2     2 Op  1   3/0.000   +    CDS       2689 -      3732    884  ## COG1686 D-alanyl-D-alanine carboxypeptidase
                               +    Prom      3768 -      3827    6.1 
     3     2 Op  2   4/0.000   +    CDS       3851 -      4324    465  ## COG3449 DNA gyrase inhibitor
                               +    Term      4357 -      4403   -0.6 
                               +    Prom      4336 -      4395    2.5 
     4     2 Op  3   2/0.000   +    CDS       4522 -      5580    938  ## COG1289 Predicted membrane protein
                               +    Prom      5588 -      5647    3.9 
     5     2 Op  4     .       +    CDS       5752 -      6081    524  ## COG2926 Uncharacterized protein conserved in bacteria
                               +    Term      6098 -      6132    6.9 
                               -    Term      6786 -      6824    5.0 
     6     3 Op  1     .       -    CDS       6979 -      7170    290  ## ECO103_2483 hypothetical protein
     7     3 Op  2     .       -    CDS       7170 -      7604    438  ## EcSMS35_3208 antirestriction protein
                               -    Term      7642 -      7675    1.1 
     8     3 Op  3     .       -    CDS       7686 -      8507    528  ## SbBS512_E1123 hypothetical protein
                               -    Prom      8566 -      8625    1.8 
                               -    Term      8547 -      8584    8.5 
     9     4 Op  1     .       -    CDS       8728 -      9138    420  ## EcSMS35_1065 hypothetical protein
    10     4 Op  2     .       -    CDS       9154 -      9642    502  ## G2583_2517 hypothetical protein
                               -    Prom      9731 -      9790    5.4 
                               -    Term      9918 -      9960    4.3 
    11     5 Op  1     .       -    CDS       9973 -     11043    685  ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily
    12     5 Op  2     .       -    CDS      11040 -     11945    507  ## ECH74115_1397 hypothetical protein
    13     5 Op  3     .       -    CDS      11942 -     14338   1563  ## COG0699 Predicted GTPases (dynamin-related)
                               -    Prom     14433 -     14492    3.2 
                               -    Term     14386 -     14417    3.1 
    14     6 Tu  1     .       -    CDS      14556 -     14981    317  ## COG3596 Predicted GTPase
Predicted protein(s)
>gi|223713590|gb|ACDM01000008.1| GENE     1       250  -       735   -133    161 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256022303|ref|ZP_05436168.1| ## NR: gi|256022303|ref|ZP_05436168.1| hypothetical protein E4_02919 [Escherichia sp. 4_1_40B] # 1     161     199     359     359     263   99.0  3e-69
MPNYANDFFLFQRVIDIANEYNSSSYILRIFGNVTNFSSRNPLITDKSTLNITFMCYTIT
GVTILSTFLLSIKAIRSNYKSDVRISFCYFLITIAFSISPLIQARYMAPLILMPTFYKCI
SKKDVFICYMASIFISIILSLLYVYLGVYPEKAPVENFTIN
>gi|223713590|gb|ACDM01000008.1| GENE     2      2689  -      3732    884    347 aa, chain + ## HITS:1  COG:ZdacD KEGG:ns NR:ns ## COG: ZdacD COG1686 # Protein_GI_number: 15802489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli O157:H7 EDL933 # 1     347      44     390     390     707   99.0  0
MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV
FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL
KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL
WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQN
FTTVQILHRRKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAP
ISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA
>gi|223713590|gb|ACDM01000008.1| GENE     3      3851  -      4324    465    157 aa, chain + ## HITS:1  COG:ECs2811 KEGG:ns NR:ns ## COG: ECs2811 COG3449 # Protein_GI_number: 15832065 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Escherichia coli O157:H7 # 1     157       1     157     157     318  100.0  2e-87
MNYEIKQEDKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA
EKLRCDTVVTVPNNFTLPENSEGVILTEISGGQYAVAVARVVGDDFAKPWYQFFNSLLQD
SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH
>gi|223713590|gb|ACDM01000008.1| GENE     4      4522  -      5580    938    352 aa, chain + ## HITS:1  COG:yeeA KEGG:ns NR:ns ## COG: yeeA COG1289 # Protein_GI_number: 16129949 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     352       1     352     352     687   99.0  0
MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPESTWPLVTMVVIMGPIS
FWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCAAAMFLCGWLALGKKPYQG
LLIGVTLAIVVGSPTGEINTALWRSGDVILGSLLAMLFTGIWPQRAFIHWRIQLAKSLTE
YNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQTINRN
LVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEK
LNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
>gi|223713590|gb|ACDM01000008.1| GENE     5      5752  -      6081    524    109 aa, chain + ## HITS:1  COG:ECs2809 KEGG:ns NR:ns ## COG: ECs2809 COG2926 # Protein_GI_number: 15832063 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     109      23     131     131     177  100.0  4e-45
METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA
IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
>gi|223713590|gb|ACDM01000008.1| GENE     6      6979  -      7170    290     63 aa, chain - ## HITS:1  COG:no KEGG:ECO103_2483 NR:ns ## KEGG: ECO103_2483 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      63       1      63      63     109  100.0  3e-23
MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAEKGYSLRVVDDRDSTETPATYASPH
QLL
>gi|223713590|gb|ACDM01000008.1| GENE     7      7170  -      7604    438    144 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_3208 NR:ns ## KEGG: EcSMS35_3208 # Name: not_defined # Def: antirestriction protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     108       1     108     159     205   96.0  5e-52
MKTVSQNTPTIYSATTPENNPPQLVASLVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMD
RLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGTRSQLINSIDILRARRA
TGLMTRDNYRTVNNITLGKYPEAK
>gi|223713590|gb|ACDM01000008.1| GENE     8      7686  -      8507    528    273 aa, chain - ## HITS:1  COG:no KEGG:SbBS512_E1123 NR:ns ## KEGG: SbBS512_E1123 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 3     273      45     315     315     530  100.0  1e-149
MRLASRFGYAANQIRRDRPLTHEELIRHVPSIFGEDRHTSRSERYAYIPTITVLENLQRE
GFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSHDGTSSYQMLPGYF
RFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPAR
QALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKG
KRIHTRAIHSIDTDIKLNRALWVMAETMLESLR
>gi|223713590|gb|ACDM01000008.1| GENE     9      8728  -      9138    420    136 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_1065 NR:ns ## KEGG: EcSMS35_1065 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     136       1     136     136     259  100.0  2e-68
MKTFIKTLLVAVTILFSVFATAKQVKLPNNIKYVNTTEAFSCTEIDGMNCQTKNQFNYKD
NSYVFVLERGGAWCYDYTVSVVNLKTGKAQMIEYGDNQLCSGSNKPFFEIKNGVPTVGVI
DTSGKPVVVAQDKLKI
>gi|223713590|gb|ACDM01000008.1| GENE    10      9154  -      9642    502    162 aa, chain - ## HITS:1  COG:no KEGG:G2583_2517 NR:ns ## KEGG: G2583_2517 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     162     102     263     263     315  100.0  4e-85
MKRLHTLMLFLAVLFTGFNFNAEAATVKQALSCNPEAWAEQPGACPSTYELYEGDATYKA
AIDKALKPVGLSGMFGKGGYMDGPGGGITPVNINGTVWFQGDGCKANTCGWDFIVTLYNP
KTHEVVGYRYFGLDDPAYLVWFGEIGVHEFAYLVKNYVAAVN
>gi|223713590|gb|ACDM01000008.1| GENE    11      9973  -     11043    685    356 aa, chain - ## HITS:1  COG:ECs1399 KEGG:ns NR:ns ## COG: ECs1399 COG1752 # Protein_GI_number: 15830653 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 1     356       1     356     356     678   99.0  0
MSTEMKTGLVLSGGGAVGAYQAGVVKALAECGTQISMVSGASIGAFNGAIIAASPDLSEA
AVRLEALWDHLGNNQVLSVNRLVYFSLLKKLFQAMNLCQIPGRAGALLTTLLRHISTING
FDNLMAQPLLSDEPLTALMDHYLDTDALADGLPLYVSLYPTEGGMQDIIDCIRAELGVGT
TKNAVFQHIQSLPRGQQKEALLASAALPLLFRPREVQGTMFGDGGMGGWRNMQGNTPVTP
LVDAGCNMVIVTHLSDGSLWDRQAFPDTTILEIRPRKRLKYAGDGGNSGGLLSFTSAHTD
AWRQQGYEDTMLAMEHIRKPLAARQALTRSEAVLQKSLDITEEADLALRNAMARIK
>gi|223713590|gb|ACDM01000008.1| GENE    12     11040  -     11945    507    301 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_1397 NR:ns ## KEGG: ECH74115_1397 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     301       1     301     301     581   99.0  1e-164
MTSPFIQQIADNRVCQVLTCLPEKFVVDFANGIDVAQEHIRTAGERTFFRRLKEGLTGEG
AARQNAINASLAQGVEASLRWLTEMTTSLATTNYAITQVNDRVSSLVSDTARLAHYSADT
REQLLTLADQVHHKLNHLEEKLHRVDQVQRAQLHLEQIFSWWSAGRYASFSPAGRCYVAL
EELRWGAFGDVIRQGETGQVNQLLDILRHKALTQMAQESGGSATVRLNTLDWLGGQGREQ
ADNEWHDAINWLGDWCSEEQHPVIWSTTQAAEHLPVRMPRLCSAERLSESMVDEIFQKGA
A
>gi|223713590|gb|ACDM01000008.1| GENE    13     11942  -     14338   1563    798 aa, chain - ## HITS:1  COG:Z1212_1 KEGG:ns NR:ns ## COG: Z1212_1 COG0699 # Protein_GI_number: 15800733 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Escherichia coli O157:H7 EDL933 # 1     274       2     275     275     507   96.0  1e-143
MHEKNIALLCDEADRLLQLNINLLRQMVEEPDVLSDSKNENRLLFDKQKALKRIEELEGE
QIKTARREMVLAVVGTMKAGKSTTINAIVGQEILPNRNRPMTSVPTLIRHVPGKTEPVLH
LEHIQPVRNLLITLQEKLATPAGQQVAQTLQQTGDTRELLDILTDDGWLKNEYHGEEEIF
TGLASLNDLVRLAAAMGTEFPFDEYAEVQKLPVIDVEFSHLVGMDACQGTLTLLDTPGPN
EAGQPQMEVMMRDQLQKASAVLAVMDYTQMNSKADEDVRKELNAIADVSAGRLFVLVNKF
DEKDRNGDGADAVRQKVPAMLNSDVLPASRVYPGSSRQAYLANRALHELRKNGTLPVDEA
WVDDFIRGAFGCMKKEYVCKDSELATEGATDLWEGSLIDQLITEVIQSSHSRAAALAVDS
AAAKLMQNAENISEYLLLRHQGLQQSIQSLQSHITSLLADIREIADCQEQMTTDVRMAME
EIDTKTRELLTGVCTSLEEELNDYFRSGKRKEQQMLEEEDAEQRRSQSGLWGKISQWSGI
NNQGREDYRKRDFAPDSPEIKFSDRREALELMTQIESTVTSLHREAEAQFRPELEKIVSG
IETGFRGTALYATENIAGRINARLEDEGFTVKISFPAVSQLQTRLAVKINLSALMEERTE
TVTRRRRQSGVWGTVCRWFGTSDLGWENYDEDVSRSVININKVREEVMSLTRAYFGELQA
SIEQDINQPVRQEIDAFFCAFREKVEQLRNTLIQSSEDHKRDQQAQERLTGRLQALNERV
PELITDSKALREELETML
>gi|223713590|gb|ACDM01000008.1| GENE    14     14556  -     14981    317    141 aa, chain - ## HITS:1  COG:yeeP KEGG:ns NR:ns ## COG: yeeP COG3596 # Protein_GI_number: 16129940 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1     141      96     236     236     256   97.0  6e-69
MVMQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHRVVAVSARTGWELDTL
VSALMTALPDHAASPLMTRLQDELRTESVRSQAREQFTGAVDRIFDTAESVCIASVARTV
LRAVRDSVVSVARAVWNWIFF
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:36:30 2011
 Seq name: gi|223713589|gb|ACDM01000009.1| Escherichia sp. 4_1_40B cont1.9, whole genome shotgun sequence 
 Length of sequence - 6586 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 4, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         19 -      1170    226  ## EC55989_2250 hypothetical protein
     2     2 Op  1     .       -    CDS       3567 -      4169    539  ## ECS88_2083 hypothetical protein
                               -    Term      4184 -      4212    0.5 
     3     2 Op  2     .       -    CDS       4263 -      4469    314  ## COG3311 Predicted transcriptional regulator
                               -    Prom      4505 -      4564    1.6 
     4     3 Tu  1     .       -    CDS       5596 -      5796    106  ## ECO103_3574 hypothetical protein
                               -    Prom      5830 -      5889    4.0 
     5     4 Tu  1     .       +    CDS       5996 -      6565    493  ## ECS88_2076 hypothetical protein
Predicted protein(s)
>gi|223713589|gb|ACDM01000009.1| GENE     1        19  -      1170    226    383 aa, chain - ## HITS:1  COG:no KEGG:EC55989_2250 NR:ns ## KEGG: EC55989_2250 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     383       5     387     387     752   99.0  0
MGKELDDICTSCPYIDAVKRHKQQLGAIEEYTQWLKKEPRASYFFLFQLYTRIHNTFFSQ
KQQLPFTPGGTHCPEPDVTLRDLTLSPGYHSDYAPQPIPEMDSSAVVPPTNENTSPPEDT
PDNTPAGGNTGQAEKTRNAGLTPIPEKRSGMPPEHLRFATGFPSQPKIAGPREKPMRTVH
PDKIYREIIWFCSSYLLKSGPEATRTIINSVFSEWASINNDYPSPFSWVDSRDSEQCDWL
WNAMQVRCVGTPLNPLTPEQKYWFACATFDNWEGWNEQQVQFLLESNPRRNRAKFTQVSF
QAPRIQHKAILLDELKSAREQQKRRDERADGSVPLKLSGKIHKQLESIARSRGVLPKKLL
NEMIEQAYHDLVATRQNSQIDSR
>gi|223713589|gb|ACDM01000009.1| GENE     2      3567  -      4169    539    200 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2083 NR:ns ## KEGG: ECS88_2083 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     200       6     205     205     405  100.0  1e-112
MKQQYQTRYELLHENYQKWLTGFTRHAVSWGVCHPNIYYFHNLTPGWVSFNGEKPEIAIV
PQSLHRLIYGPDKRSSPSLDDDLVVNLCTSEHLLVHHPMLEGILLSECERLKQHSLANKL
ISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTKNLKHKSEKDLEQWIIARQGQSEPLT
NLMDQYVLMAYRTSVDAAHS
>gi|223713589|gb|ACDM01000009.1| GENE     3      4263  -      4469    314     68 aa, chain - ## HITS:1  COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 9      58      15      64      65      75   66.0  3e-14
MATPVSLMDDQMVDMAFITQLTGLTDKWFDKLIKDGGFPAPIKMGRSSRWLKSEVEAWLQ
ARIAQSRL
>gi|223713589|gb|ACDM01000009.1| GENE     4      5596  -      5796    106     66 aa, chain - ## HITS:1  COG:no KEGG:ECO103_3574 NR:ns ## KEGG: ECO103_3574 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      63       1      63      64      86   85.0  4e-16
MVIRKKKCRDCGNAITHNTVCCPYCGSVDPFGYYRNTDRIVTILLALIIVVLLTTVSVSV
YILCSW
>gi|223713589|gb|ACDM01000009.1| GENE     5      5996  -      6565    493    189 aa, chain + ## HITS:1  COG:no KEGG:ECS88_2076 NR:ns ## KEGG: ECS88_2076 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     189      13     201     201     390  100.0  1e-107
MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRFPDVPAATDAAVISRFINALKARID
AYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVNRDTWCRAGDYRAPGSLAG
MIKQAWCSALGVDVGCHATLVHFPAWPAVWLERDDDTGFQQVLERADYLAKEHTKAHCTG
ERNFGCSRS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:38:50 2011
 Seq name: gi|223713588|gb|ACDM01000010.1| Escherichia sp. 4_1_40B cont1.10, whole genome shotgun sequence 
 Length of sequence - 376982 bp
 Number of predicted genes - 354, with homology - 352
 Number of transcription units - 200, operones - 72 average op.length -  3.1
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        786 -      1154    171  ## EC55989_2240 putative transposase, ISL3 family
     2     2 Op  1   1/0.956   -    CDS       1806 -      2840    923  ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold
     3     2 Op  2   1/0.956   -    CDS       2843 -      3808    739  ## COG3238 Uncharacterized protein conserved in bacteria
                               -    Term      3822 -      3855    3.1 
     4     2 Op  3   2/0.912   -    CDS       3865 -      4623    767  ## COG5426 Uncharacterized membrane protein
                               -    Prom      4656 -      4715    3.4 
     5     3 Tu  1     .       -    CDS       4735 -      5847    397  ## COG0524 Sugar kinases, ribokinase family
                               -    Prom      5934 -      5993    6.8 
     6     4 Tu  1     .       -    CDS       6043 -      6159     90  ## COG3436 Transposase and inactivated derivatives
                               +    Prom      7284 -      7343    3.6 
     7     5 Op  1     .       +    CDS       7468 -      7602     63  ## ECP_1964 putative thioesterase
     8     5 Op  2   8/0.029   +    CDS       7592 -      8824    505  ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase
     9     5 Op  3     .       +    CDS       8809 -      9453    329  ## COG1475 Predicted transcriptional regulators
                               +    Term      9525 -      9560   -0.2 
                               -    Term      9746 -      9790   -0.8 
    10     6 Op  1   5/0.250   -    CDS       9824 -     11002    389  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
    11     6 Op  2     .       -    CDS      11029 -     11970    265  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
                               -    Prom     12003 -     12062    8.6 
                               +    Prom     12868 -     12927    4.0 
    12     7 Tu  1     .       +    CDS      13013 -     13177     78  ## EcSMS35_1129 hypothetical protein
                               +    Prom     13488 -     13547    6.1 
    13     8 Op  1   8/0.029   +    CDS      13645 -     14187    440  ## COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase
    14     8 Op  2  11/0.029   +    CDS      14184 -     14927    862  ## COG0368 Cobalamin-5-phosphate synthase
    15     8 Op  3   4/0.500   +    CDS      14939 -     16018    710  ## COG2038 NaMN:DMB phosphoribosyltransferase
    16     8 Op  4   3/0.706   +    CDS      16083 -     17015    636  ## COG1376 Uncharacterized protein conserved in bacteria
                               +    Term     17036 -     17078    6.2 
                               -   TRNA      17071 -     17146   87.1  # Asn GTT 0 0
                               +    Prom     17197 -     17256    4.0 
    17     9 Tu  1   9/0.029   +    CDS      17472 -     18389    493  ## COG0583 Transcriptional regulator
                               +    Prom     18399 -     18458    4.8 
    18    10 Op  1   1/0.956   +    CDS      18563 -     19441    614  ## COG0583 Transcriptional regulator
                               +    Term     19449 -     19477    0.6 
                               -   TRNA      19479 -     19554   87.1  # Asn GTT 0 0
                               +    Prom     19657 -     19716    2.9 
    19    10 Op  2     .       +    CDS      19748 -     21202    826  ## COG0534 Na+-driven multidrug efflux pump
                               +    Term     21325 -     21391   30.0 
                               +   TRNA      21303 -     21378   87.1  # Asn GTT 0 0
                               -    Term     21783 -     21819    4.2 
    20    11 Tu  1     .       -    CDS      21832 -     22548    714  ## COG0217 Uncharacterized conserved protein
                               -    Prom     22608 -     22667    9.9 
                               -    Term     22791 -     22835   10.5 
    21    12 Op  1     .       -    CDS      22891 -     24345   1173  ## COG0775 Nucleoside phosphorylase
                               -    Prom     24376 -     24435    4.3 
                               -    Term     24401 -     24446    1.5 
    22    12 Op  2     .       -    CDS      24447 -     25763   1019  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     25789 -     25848    4.6 
    23    13 Tu  1     .       +    CDS      26078 -     27130    279  ## COG0859 ADP-heptose:LPS heptosyltransferase
    24    14 Op  1     .       -    CDS      27258 -     27905     52  ## APECO1_1065 putative autotransporter
    25    14 Op  2     .       -    CDS      27954 -     29216    447  ## APECO1_1065 putative autotransporter
    26    14 Op  3     .       -    CDS      29252 -     29422     60  ## ECIAI39_1068 hypothetical protein
    27    14 Op  4     .       -    CDS      29349 -     30098    461  ## APECO1_1064 hypothetical protein
                               -    Prom     30161 -     30220    3.2 
                               -    Term     30705 -     30737    3.2 
    28    15 Tu  1     .       -    CDS      30749 -     32770   1649  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
                               -    Prom     32797 -     32856    5.2 
    29    16 Op  1   2/0.912   -    CDS      32901 -     34478    997  ## COG1021 Peptide arylation enzymes
    30    16 Op  2   2/0.912   -    CDS      34482 -     35285    206  ## COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis
    31    16 Op  3   2/0.912   -    CDS      35282 -     36382    442  ## COG4693 Oxidoreductase (NAD-binding), involved in siderophore biosynthesis
    32    16 Op  4   7/0.044   -    CDS      36379 -     45858   5763  ## COG3321 Polyketide synthase modules and related proteins
    33    16 Op  5   2/0.912   -    CDS      45946 -     52053   3464  ## COG1020 Non-ribosomal peptide synthetase modules and related proteins
                               -    Prom     52095 -     52154    5.2 
                               -    Term     52169 -     52211   12.5 
    34    17 Tu  1     .       -    CDS      52244 -     53203    509  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     53278 -     53337    3.5 
                               +    Prom     53237 -     53296    3.0 
    35    18 Op  1  35/0.000   +    CDS      53460 -     55172    194  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
    36    18 Op  2   3/0.706   +    CDS      55159 -     56961    218  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    37    18 Op  3   1/0.956   +    CDS      56954 -     58234    967  ## COG0477 Permeases of the major facilitator superfamily
    38    18 Op  4     .       +    CDS      58262 -     59566   1173  ## COG0147 Anthranilate/para-aminobenzoate synthases component I
                               -    Term     59694 -     59724    4.3 
    39    19 Op  1     .       -    CDS      59760 -     60986    371  ## PROTEIN SUPPORTED gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15
                               -   TRNA      61184 -     61259   87.1  # Asn GTT 0 0
                               -    Term     61214 -     61252   -0.8 
    40    19 Op  2     .       -    CDS      61360 -     62157    315  ## COG3228 Uncharacterized protein conserved in bacteria
                               -    Prom     62281 -     62340   80.3 
                               +   TRNA      62251 -     62340   75.5  # Ser CGA 0 0
                               -    Term     62625 -     62660    2.3 
    41    20 Tu  1     .       -    CDS      62910 -     63440    263  ## COG3038 Cytochrome B561
                               -    Prom     63537 -     63596    3.9 
                               -    Term     63648 -     63692    9.1 
    42    21 Tu  1     .       -    CDS      63783 -     64454    446  ## COG3443 Predicted periplasmic or secreted protein
                               -    Prom     64583 -     64642    5.2 
    43    22 Op  1  13/0.015   -    CDS      64690 -     65325    460  ## COG2717 Predicted membrane protein
    44    22 Op  2   3/0.706   -    CDS      65326 -     66273    854  ## COG2041 Sulfite oxidase and related enzymes
                               -    Prom     66329 -     66388    3.1 
    45    23 Tu  1     .       -    CDS      66439 -     66852    292  ## COG2351 Transthyretin-like protein
                               -    Prom     66897 -     66956    5.2 
                               +    Prom     66800 -     66859    4.8 
    46    24 Tu  1     .       +    CDS      66937 -     67656    169  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               +    Prom     67998 -     68057    3.2 
    47    25 Tu  1     .       +    CDS      68112 -     69014    290  ## COG0642 Signal transduction histidine kinase
                               +    Term     69044 -     69089    1.3 
                               -    Term     69032 -     69076    9.4 
    48    26 Tu  1     .       -    CDS      69112 -     69963    774  ## COG0693 Putative intracellular protease/amidase
                               -    Term     70470 -     70512    8.1 
    49    27 Tu  1     .       -    CDS      70556 -     71671   1250  ## COG3203 Outer membrane protein (porin)
                               -    Prom     71763 -     71822    8.6 
                               +    Prom     72029 -     72088    9.7 
    50    28 Op  1     .       +    CDS      72322 -     72603    322  ## SSON_2020 hypothetical protein
    51    28 Op  2   4/0.500   +    CDS      72643 -     73338    538  ## COG1418 Predicted HD superfamily hydrolase
    52    28 Op  3   6/0.118   +    CDS      73405 -     74823   1312  ## COG0270 Site-specific DNA methylase
    53    28 Op  4     .       +    CDS      74804 -     75274    477  ## COG3727 DNA G:T-mismatch repair endonuclease
    54    29 Tu  1     .       -    CDS      75263 -     76183    963  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
                               -    Prom     76209 -     76268    5.0 
                               +    Prom     76201 -     76260    4.2 
    55    30 Op  1   3/0.706   +    CDS      76362 -     77273   1153  ## COG2354 Uncharacterized protein conserved in bacteria
    56    30 Op  2     .       +    CDS      77352 -     77534    185  ## COG5475 Uncharacterized small protein
                               +    Prom     77623 -     77682    4.5 
    57    31 Op  1     .       +    CDS      77723 -     78640    710  ## JW5832 predicted diguanylate cyclase
    58    31 Op  2     .       +    CDS      78644 -     79399    646  ## COG2199 FOG: GGDEF domain
                               +    Term     79572 -     79608    3.7 
    59    32 Tu  1     .       -    CDS      79396 -     80211    735  ## COG3769 Predicted hydrolase (HAD superfamily)
                               -    Prom     80234 -     80293    2.2 
    60    33 Tu  1     .       -    CDS      80510 -     80737    292  ## G2583_2404 hypothetical protein
                               -    Prom     80796 -     80855    4.2 
    61    34 Tu  1     .       +    CDS      80900 -     81088    324  ## LF82_0529 protein DsrB
                               +    Term     81180 -     81225    4.0 
    62    35 Tu  1     .       -    CDS      81132 -     81755    414  ## COG2771 DNA-binding HTH domain-containing proteins
                               -    Prom     81950 -     82009    2.8 
    63    36 Op  1  17/0.000   -    CDS      82045 -     82830    760  ## COG1684 Flagellar biosynthesis pathway, component FliR
    64    36 Op  2  16/0.000   -    CDS      82839 -     83108    432  ## COG1987 Flagellar biosynthesis pathway, component FliQ
    65    36 Op  3   6/0.118   -    CDS      83118 -     83855    706  ## COG1338 Flagellar biosynthesis pathway, component FliP
    66    36 Op  4   6/0.118   -    CDS      83855 -     84220    262  ## COG3190 Flagellar biogenesis protein
    67    36 Op  5  20/0.000   -    CDS      84223 -     84636    543  ## COG1886 Flagellar motor switch/type III secretory pathway protein
    68    36 Op  6  13/0.015   -    CDS      84633 -     85637   1052  ## COG1868 Flagellar motor switch protein
    69    36 Op  7   7/0.044   -    CDS      85642 -     86106    514  ## COG1580 Flagellar basal body-associated protein
                               -    Prom     86139 -     86198    2.2 
    70    37 Op  1   8/0.029   -    CDS      86211 -     87338    790  ## COG3144 Flagellar hook-length control protein
    71    37 Op  2  12/0.015   -    CDS      87335 -     87778    506  ## COG2882 Flagellar biosynthesis chaperone
    72    37 Op  3  13/0.015   -    CDS      87797 -     89170   1527  ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase
    73    37 Op  4  15/0.015   -    CDS      89170 -     89856    822  ## COG1317 Flagellar biosynthesis/type III secretory pathway protein
    74    37 Op  5  19/0.000   -    CDS      89849 -     90844   1288  ## COG1536 Flagellar motor switch protein
    75    37 Op  6     .       -    CDS      90837 -     92495   1532  ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein
                               -    Prom     92581 -     92640    2.2 
                               +    Prom     92627 -     92686    3.6 
    76    38 Tu  1     .       +    CDS      92710 -     93024    427  ## COG1677 Flagellar hook-basal body protein
                               +    Term     93193 -     93238    3.7 
                               +    Prom     93284 -     93343    1.9 
    77    39 Tu  1     .       +    CDS      93368 -     93700    321  ## COG2076 Membrane transporters of cations and cationic drugs
                               +    Term     93788 -     93814   -0.6 
                               +    Prom     93703 -     93762    6.9 
    78    40 Tu  1     .       +    CDS      93869 -     94420     93  ## COG1881 Phospholipid-binding protein
    79    41 Tu  1     .       -    CDS      94554 -     94802    113  ## 
                               -    Prom     94871 -     94930    2.8 
    80    42 Tu  1     .       -    CDS      95384 -     95908    -57  ## COG1943 Transposase and inactivated derivatives
                               -    Prom     96038 -     96097    1.5 
                               +    Prom     95871 -     95930    5.1 
    81    43 Tu  1     .       +    CDS      95991 -     96260     85  ## COG0675 Transposase and inactivated derivatives
                               -    Term     96111 -     96141    0.3 
    82    44 Tu  1     .       -    CDS      96142 -     96639    308  ## COG2135 Uncharacterized conserved protein
                               -    Prom     96659 -     96718    2.7 
    83    45 Op  1  10/0.029   -    CDS      96748 -     96981    349  ## COG0425 Predicted redox protein, regulator of disulfide bond formation
    84    45 Op  2     .       -    CDS      96978 -     98183   1462  ## COG2391 Predicted transporter component
                               -    Prom     98221 -     98280    3.9 
                               +    Prom     98212 -     98271    6.7 
    85    46 Tu  1     .       +    CDS      98370 -     98783    519  ## SDY_1087 hypothetical protein
                               +    Term     98791 -     98825    5.0 
                               -    Term     98777 -     98811    5.0 
    86    47 Op  1     .       -    CDS      98817 -    100304   1510  ## COG0366 Glycosidases
                               -    Term    100325 -    100374   -0.9 
    87    47 Op  2     .       -    CDS     100382 -    100747    474  ## ECIAI39_1129 flagellar biosynthesis protein FliT
    88    47 Op  3  15/0.015   -    CDS     100747 -    101157    437  ## COG1516 Flagellin-specific chaperone FliS
    89    47 Op  4     .       -    CDS     101172 -    102584   1437  ## COG1345 Flagellar capping protein
                               -    Prom    102798 -    102857    2.6 
                               +    Prom    102686 -    102745    3.8 
    90    48 Tu  1     .       +    CDS     102839 -    104332   1545  ## COG1344 Flagellin and related hook-associated proteins
                               +    Term    104354 -    104381    1.5 
                               +    Prom    104409 -    104468    3.0 
    91    49 Op  1     .       +    CDS     104498 -    105217    825  ## COG1191 DNA-directed RNA polymerase specialized sigma subunit
    92    49 Op  2     .       +    CDS     105266 -    105814    255  ## APECO1_962 flagella biosynthesis protein FliZ
                               +    Prom    105818 -    105877    4.0 
    93    49 Op  3   2/0.912   +    CDS     105902 -    106702   1298  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
                               +    Term    106712 -    106765    3.9 
                               +    Prom    106720 -    106779    8.0 
    94    50 Op  1   1/0.956   +    CDS     106807 -    107793   1195  ## COG2515 1-aminocyclopropane-1-carboxylate deaminase
    95    50 Op  2  34/0.000   +    CDS     107808 -    108476    721  ## COG0765 ABC-type amino acid transport system, permease component
    96    50 Op  3   5/0.250   +    CDS     108473 -    109225    660  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               +    Term    109371 -    109419    5.2 
                               +    Prom    109317 -    109376    7.7 
    97    51 Tu  1     .       +    CDS     109491 -    110177    430  ## COG2771 DNA-binding HTH domain-containing proteins
                               +    Term    110211 -    110251    4.2 
                               -    Term    110197 -    110237    8.0 
    98    52 Tu  1     .       -    CDS     110245 -    110469    382  ## ECDH10B_2056 hypothetical protein
                               -    Prom    110660 -    110719    5.5 
                               +    Prom    110825 -    110884    5.2 
    99    53 Op  1   3/0.706   +    CDS     110928 -    111584    539  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
   100    53 Op  2   9/0.029   +    CDS     111647 -    113413   1642  ## COG0322 Nuclease subunit of the excinuclease complex
   101    53 Op  3   1/0.956   +    CDS     113470 -    114018    264  ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase
                               +   TRNA     114170 -    114245   93.7  # Gly GCC 0 0
                               +   TRNA     114300 -    114373   51.5  # Cys GCA 0 0
                               +   TRNA     114386 -    114472   71.6  # Leu TAA 0 0
                               +    Prom    114527 -    114586    2.9 
   102    54 Tu  1     .       +    CDS     114668 -    115333    756  ## COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA
                               +    Term    115338 -    115391    3.6 
                               -    Term    115331 -    115372    2.5 
   103    55 Tu  1     .       -    CDS     115395 -    116573   1198  ## COG0814 Amino acid permeases
                               -    Prom    116695 -    116754    6.6 
                               +    Prom    116665 -    116724    6.2 
   104    56 Tu  1     .       +    CDS     116797 -    117036    321  ## SSON_1212 hypothetical protein
                               -    Term    117032 -    117066    6.6 
   105    57 Tu  1     .       -    CDS     117074 -    117571    667  ## COG1528 Ferritin-like protein
                               -    Prom    117605 -    117664    7.9 
   106    58 Tu  1     .       +    CDS     118529 -    118780    284  ## B21_01860 hypothetical protein
                               +    Term    118786 -    118825    7.4 
                               -    Term    118770 -    118817    7.9 
   107    59 Tu  1     .       -    CDS     118859 -    119362    483  ## COG1528 Ferritin-like protein
                               -    Prom    119542 -    119601    6.8 
                               +    Prom    119918 -    119977    4.3 
   108    60 Op  1  16/0.000   +    CDS     120159 -    121148   1233  ## COG1879 ABC-type sugar transport system, periplasmic component
   109    60 Op  2  21/0.000   +    CDS     121218 -    122732    183  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
   110    60 Op  3   1/0.956   +    CDS     122747 -    123733   1141  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
                               +    Term    123772 -    123809    7.0 
                               +    Prom    123786 -    123845    3.6 
   111    61 Op  1   8/0.029   +    CDS     123900 -    124700    698  ## COG1877 Trehalose-6-phosphatase
   112    61 Op  2     .       +    CDS     124675 -    126099   1260  ## COG0380 Trehalose-6-phosphate synthase
                               -    Term    126025 -    126054    2.5 
   113    62 Tu  1     .       -    CDS     126106 -    126534    396  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
                               +    Prom    127034 -    127093    5.4 
   114    63 Op  1     .       +    CDS     127314 -    127664    272  ## EC55989_2071 transcriptional activator FlhD
   115    63 Op  2     .       +    CDS     127667 -    128245    412  ## ECSP_2465 transcriptional activator FlhC
                               +    Term    128272 -    128309    7.2 
   116    64 Op  1  19/0.000   +    CDS     128372 -    129259   1021  ## COG1291 Flagellar motor component
   117    64 Op  2   5/0.250   +    CDS     129256 -    130182    653  ## COG1360 Flagellar motor protein
   118    64 Op  3  20/0.000   +    CDS     130193 -    132151   1642  ## COG0643 Chemotaxis protein histidine kinase and related kinases
   119    64 Op  4  17/0.000   +    CDS     132172 -    132675    594  ## COG0835 Chemotaxis signal transduction protein
                               +    Term    132701 -    132739    4.5 
                               +    Prom    132715 -    132774    5.0 
   120    64 Op  5  13/0.015   +    CDS     132820 -    134481   1461  ## COG0840 Methyl-accepting chemotaxis protein
   121    64 Op  6   9/0.029   +    CDS     134527 -    136128   1539  ## COG0840 Methyl-accepting chemotaxis protein
   122    64 Op  7  13/0.015   +    CDS     136147 -    137007    613  ## COG1352 Methylase of chemotaxis methyl-accepting proteins
   123    64 Op  8  18/0.000   +    CDS     137010 -    138059    892  ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
   124    64 Op  9   8/0.029   +    CDS     138074 -    138463    499  ## COG0784 FOG: CheY-like receiver
   125    64 Op 10   4/0.500   +    CDS     138474 -    139118    802  ## COG3143 Chemotaxis protein
                               +    Prom    139153 -    139212    2.8 
   126    65 Op  1  13/0.015   +    CDS     139320 -    140468   1064  ## COG1377 Flagellar biosynthesis pathway, component FlhB
   127    65 Op  2     .       +    CDS     140461 -    142539   2089  ## COG1298 Flagellar biosynthesis pathway, component FlhA
   128    65 Op  3     .       +    CDS     142539 -    142931    142  ## B21_01838 hypothetical protein
                               +    Term    143094 -    143139   -1.0 
   129    66 Tu  1     .       -    CDS     143051 -    143539    212  ## COG3755 Uncharacterized protein conserved in bacteria
                               -    Prom    143635 -    143694    4.4 
                               -    Term    143654 -    143697    7.4 
   130    67 Tu  1     .       -    CDS     143716 -    145449   2224  ## COG0018 Arginyl-tRNA synthetase
                               -    Prom    145508 -    145567    4.1 
                               +    Prom    145582 -    145641    4.1 
   131    68 Op  1   3/0.706   +    CDS     145665 -    146231    402  ## COG3102 Uncharacterized protein conserved in bacteria
   132    68 Op  2   1/0.956   +    CDS     146245 -    146991    393  ## COG3142 Uncharacterized protein involved in copper resistance
                               +    Term    147003 -    147038    2.0 
                               +    Prom    147295 -    147354    7.7 
   133    69 Op  1   7/0.044   +    CDS     147379 -    148479    643  ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit
   134    69 Op  2   5/0.250   +    CDS     148504 -    149301    927  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
   135    69 Op  3     .       +    CDS     149314 -    150933   1702  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Term    150972 -    151009   -0.2 
   136    70 Op  1  17/0.000   -    CDS     151098 -    152069   1059  ## COG0500 SAM-dependent methyltransferases
   137    70 Op  2   2/0.912   -    CDS     152066 -    152809    772  ## COG0500 SAM-dependent methyltransferases
   138    70 Op  3   2/0.912   -    CDS     152850 -    153245    490  ## COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily
   139    70 Op  4   1/0.956   -    CDS     153298 -    154116    481  ## COG1801 Uncharacterized conserved protein
   140    70 Op  5     .       -    CDS     154113 -    154679    539  ## COG1335 Amidases related to nicotinamidase
                               -    Prom    154706 -    154765    6.5 
                               +    Prom    154835 -    154894    4.6 
   141    71 Op  1   5/0.250   +    CDS     154989 -    156761   2203  ## COG0173 Aspartyl-tRNA synthetase
   142    71 Op  2   7/0.044   +    CDS     156822 -    157331    324  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
   143    71 Op  3   8/0.029   +    CDS     157360 -    158100   1067  ## COG0217 Uncharacterized conserved protein
   144    71 Op  4     .       +    CDS     158135 -    158656    581  ## COG0817 Holliday junction resolvasome, endonuclease subunit
                               +    Term    158664 -    158701    5.2 
                               -    Term    158481 -    158522    2.3 
   145    72 Tu  1     .       -    CDS     158658 -    159260    231  ## JW5306 hypothetical protein
                               -    Prom    159292 -    159351    6.0 
                               +    Prom    159445 -    159504    7.4 
   146    73 Op  1  29/0.000   +    CDS     159535 -    160146    632  ## COG0632 Holliday junction resolvasome, DNA-binding subunit
   147    73 Op  2     .       +    CDS     160155 -    161165   1079  ## COG2255 Holliday junction resolvasome, helicase subunit
                               +    Term    161182 -    161232    5.6 
   148    74 Op  1  42/0.000   -    CDS     161312 -    162097    972  ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components
   149    74 Op  2     .       -    CDS     162094 -    162849    219  ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16
                               -    Prom    162906 -    162965    7.3 
                               +    Prom    162698 -    162757    3.0 
   150    75 Op  1     .       +    CDS     162874 -    163860    408  ## COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin
   151    75 Op  2   1/0.956   +    CDS     163939 -    165198   1358  ## COG0739 Membrane proteins related to metalloendopeptidases
                               +    Term    165215 -    165249    3.5 
                               +    Prom    165224 -    165283    6.4 
   152    76 Tu  1     .       +    CDS     165318 -    166289    746  ## COG1560 Lauroyl/myristoyl acyltransferase
                               +    Term    166379 -    166431   10.7 
                               -    Term    166278 -    166316    5.3 
   153    77 Tu  1     .       -    CDS     166420 -    167862   1458  ## COG0469 Pyruvate kinase
                               -    Term    167931 -    167971    1.4 
   154    78 Tu  1     .       -    CDS     167990 -    168859    672  ## COG1737 Transcriptional regulators
                               +    Prom    168965 -    169024    7.8 
   155    79 Tu  1     .       +    CDS     169197 -    170672   1733  ## COG0364 Glucose-6-phosphate 1-dehydrogenase
                               +    Term    170752 -    170789    5.1 
                               +    Prom    170740 -    170799    6.6 
   156    80 Op  1   8/0.029   +    CDS     170907 -    172718   1687  ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase
   157    80 Op  2     .       +    CDS     172755 -    173396    984  ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase
                               +    Term    173400 -    173447    8.7 
                               -    Term    173388 -    173432   10.2 
   158    81 Tu  1     .       -    CDS     173452 -    174630   1267  ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)
                               -    Prom    174723 -    174782    4.7 
                               +    Prom    174678 -    174737    5.0 
   159    82 Op  1     .       +    CDS     174764 -    175054    389  ## COG3141 Uncharacterized protein conserved in bacteria
   160    82 Op  2     .       +    CDS     175121 -    175477    205  ## ECIAI39_1203 hypothetical protein
   161    83 Tu  1     .       -    CDS     175391 -    175597     90  ## gi|188494878|ref|ZP_03002148.1| hypothetical protein Ec53638_0054
                               -    Prom    175661 -    175720    3.2 
                               +    Prom    175588 -    175647    2.8 
   162    84 Tu  1     .       +    CDS     175804 -    176463    777  ## COG2979 Uncharacterized protein conserved in bacteria
                               +    Prom    176587 -    176646    4.3 
   163    85 Tu  1     .       +    CDS     176672 -    178732   1873  ## COG1770 Protease II
   164    86 Op  1   4/0.500   -    CDS     178729 -    179391    783  ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
   165    86 Op  2     .       -    CDS     179415 -    180071    448  ## COG0388 Predicted amidohydrolase
                               -    Prom    180111 -    180170    3.7 
   166    87 Tu  1     .       -    CDS     180173 -    180403    338  ## ECP_1786 DNA polymerase III subunit theta (EC:2.7.7.7)
                               -    Prom    180425 -    180484    2.1 
                               +    Prom    180454 -    180513    4.0 
   167    88 Op  1   8/0.029   +    CDS     180542 -    180916    371  ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC
   168    88 Op  2     .       +    CDS     180920 -    181792    712  ## COG1276 Putative copper export protein
   169    88 Op  3     .       +    CDS     181805 -    182146    373  ## SSON_1309 hypothetical protein
                               +    Term    182175 -    182232    4.4 
   170    89 Tu  1     .       +    CDS     182542 -    183198    516  ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
   171    90 Op  1     .       -    CDS     183199 -    183474    183  ## SbBS512_E2105 hypothetical protein
   172    90 Op  2     .       -    CDS     183495 -    183731    223  ## ECSP_2410 hypothetical protein
                               -    Prom    183785 -    183844    4.4 
   173    91 Tu  1   4/0.500   -    CDS     183849 -    185288   1208  ## COG0144 tRNA and rRNA cytosine-C5-methylases
                               -    Term    185324 -    185359    7.2 
   174    92 Op  1  11/0.029   -    CDS     185368 -    188001   2564  ## COG3008 Paraquat-inducible protein B
   175    92 Op  2     .       -    CDS     187970 -    189148    783  ## COG2995 Uncharacterized paraquat-inducible protein A
                               -    Prom    189328 -    189387    4.8 
                               +    Prom    189257 -    189316    3.7 
   176    93 Op  1   4/0.500   +    CDS     189383 -    189880    302  ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768
                               +    Term    189907 -    189941    3.1 
   177    93 Op  2   7/0.044   +    CDS     189977 -    190675    542  ## COG3109 Activator of osmoprotectant transporter ProP
   178    93 Op  3   5/0.250   +    CDS     190695 -    192743   2120  ## COG0793 Periplasmic protease
                               +    Term    192750 -    192785    6.0 
                               +    Prom    192772 -    192831    4.4 
   179    94 Tu  1     .       +    CDS     192938 -    193816    864  ## COG0501 Zn-dependent protease with chaperone function
                               +    Term    193837 -    193868    2.4 
                               -    Term    193825 -    193856    2.4 
   180    95 Tu  1     .       -    CDS     193862 -    195235    974  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    195355 -    195414    8.3 
                               +    Prom    195314 -    195373    6.3 
   181    96 Tu  1     .       +    CDS     195412 -    196203    935  ## COG1414 Transcriptional regulator
                               +    Term    196213 -    196257    3.1 
                               -    Term    196201 -    196243    2.3 
   182    97 Tu  1     .       -    CDS     196347 -    196586    256  ## ECO103_2017 hypothetical protein
                               -    Prom    196610 -    196669    5.2 
                               +    Prom    196884 -    196943    6.0 
   183    98 Tu  1     .       +    CDS     196963 -    197250    254  ## ECS88_1877 hypothetical protein
                               +    Term    197264 -    197307    6.1 
                               +    Prom    197945 -    198004    2.6 
   184    99 Tu  1     .       +    CDS     198076 -    198285    338  ## COG1278 Cold shock proteins
                               +    Term    198334 -    198364    1.0 
                               +    Prom    198293 -    198352    3.7 
   185   100 Tu  1     .       +    CDS     198451 -    199260    553  ## COG0500 SAM-dependent methyltransferases
                               +    Term    199509 -    199548    3.0 
                               -    Term    199180 -    199221    2.1 
   186   101 Tu  1     .       -    CDS     199257 -    199823    678  ## COG1971 Predicted membrane protein
                               -    Term    200018 -    200058    0.8 
   187   102 Tu  1   4/0.500   -    CDS     200252 -    200710    298  ## COG4811 Predicted membrane protein
                               -    Term    200719 -    200748    3.5 
   188   103 Op  1  13/0.015   -    CDS     200765 -    201616   1058  ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
   189   103 Op  2  13/0.015   -    CDS     201629 -    202429   1029  ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
   190   103 Op  3     .       -    CDS     202492 -    203463   1212  ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
                               -    Prom    203598 -    203657    4.5 
   191   104 Tu  1     .       +    CDS     203926 -    205482   1881  ## COG1253 Hemolysins and related proteins containing CBS domains
   192   105 Tu  1     .       -    CDS     205486 -    207084   1316  ## COG2200 FOG: EAL domain
                               -    Prom    207141 -    207200    1.9 
                               -    Term    207167 -    207204    8.2 
   193   106 Tu  1     .       -    CDS     207215 -    208579   1421  ## COG1760 L-serine deaminase
                               -    Prom    208672 -    208731    5.2 
   194   107 Op  1   6/0.118   -    CDS     208763 -    209341    428  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
   195   107 Op  2     .       -    CDS     209345 -    210706   1052  ## COG0147 Anthranilate/para-aminobenzoate synthases component I
                               -    Prom    210754 -    210813    5.2 
                               +    Prom    210698 -    210757    4.7 
   196   108 Tu  1     .       +    CDS     210780 -    210959    347  ## COG3140 Uncharacterized protein conserved in bacteria
                               -    Term    211006 -    211049    5.2 
   197   109 Tu  1     .       -    CDS     211079 -    211378    233  ## S1533 hypothetical protein
   198   110 Tu  1     .       -    CDS     211800 -    212144    469  ## COG0251 Putative translation initiation inhibitor, yjgF family
                               +    Prom    212112 -    212171    2.9 
   199   111 Op  1   8/0.029   +    CDS     212276 -    214186   1667  ## COG1199 Rad3-related DNA helicases
   200   111 Op  2   7/0.044   +    CDS     214244 -    214939    685  ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone
   201   111 Op  3   7/0.044   +    CDS     214979 -    215560    571  ## COG3065 Starvation-inducible outer membrane lipoprotein
                               +    Term    215586 -    215614    0.6 
                               +    Prom    215620 -    215679    3.1 
   202   112 Op  1   8/0.029   +    CDS     215699 -    217450   1680  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
                               +    Term    217469 -    217501    3.0 
   203   112 Op  2     .       +    CDS     217532 -    218647   1124  ## COG0349 Ribonuclease D
                               -    Term    218640 -    218696   13.2 
   204   113 Op  1  11/0.029   -    CDS     218701 -    219666    604  ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
                               -    Term    219676 -    219718    5.5 
   205   113 Op  2   3/0.706   -    CDS     219722 -    220846   1230  ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
   206   113 Op  3   3/0.706   -    CDS     220878 -    222308   1460  ## COG1292 Choline-glycine betaine transporter
                               -    Prom    222370 -    222429    7.2 
                               -    Term    222461 -    222495    6.0 
   207   114 Tu  1     .       -    CDS     222514 -    223599   1054  ## COG0473 Isocitrate/isopropylmalate dehydrogenase
                               -    Prom    223634 -    223693    3.0 
                               +    Prom    223602 -    223661    3.8 
   208   115 Tu  1     .       +    CDS     223702 -    224625    856  ## COG0583 Transcriptional regulator
                               +    Prom    224652 -    224711    3.5 
   209   116 Tu  1     .       +    CDS     224752 -    225390    488  ## COG1280 Putative threonine efflux protein
                               +    Prom    225437 -    225496    3.6 
   210   117 Op  1     .       +    CDS     225563 -    225922    362  ## COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance
   211   117 Op  2     .       +    CDS     225926 -    226108    292  ## ECB_01765 hypothetical protein
                               +    Prom    226154 -    226213    3.6 
   212   118 Tu  1     .       +    CDS     226256 -    226504    330  ## COG2261 Predicted membrane protein
                               +    Term    226518 -    226555    6.3 
                               -    Term    226679 -    226717    2.0 
   213   119 Tu  1     .       -    CDS     226771 -    227796    760  ## COG2199 FOG: GGDEF domain
                               -    Prom    227895 -    227954    6.9 
                               +    Prom    227895 -    227954    3.9 
   214   120 Tu  1     .       +    CDS     227979 -    228233    142  ## COG3042 Putative hemolysin
                               +    Term    228261 -    228317    0.6 
   215   121 Op  1   3/0.706   -    CDS     228255 -    228602    450  ## COG3189 Uncharacterized conserved protein
   216   121 Op  2     .       -    CDS     228657 -    229838    570  ## COG2807 Cyanate permease
                               -    Prom    229861 -    229920    3.4 
                               +    Prom    229855 -    229914    5.8 
   217   122 Tu  1     .       +    CDS     229938 -    230756    321  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Term    230661 -    230694    2.0 
   218   123 Tu  1     .       -    CDS     230713 -    231159    614  ## COG2707 Predicted membrane protein
                               -    Prom    231259 -    231318    3.1 
                               -    Term    231262 -    231309    4.2 
   219   124 Op  1   2/0.912   -    CDS     231434 -    231937    517  ## COG2606 Uncharacterized conserved protein
   220   124 Op  2   5/0.250   -    CDS     231980 -    233452   1069  ## COG2199 FOG: GGDEF domain
                               -    Prom    233585 -    233644    2.7 
                               -    Term    233603 -    233633    1.0 
   221   125 Tu  1   4/0.500   -    CDS     233651 -    234994    827  ## COG2199 FOG: GGDEF domain
                               -    Prom    235083 -    235142    4.8 
                               -    Term    235229 -    235267    5.2 
   222   126 Tu  1     .       -    CDS     235273 -    236556    947  ## PROTEIN SUPPORTED gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34
   223   127 Tu  1     .       -    CDS     236669 -    238603   2003  ## COG2766 Putative Ser protein kinase
                               +    Prom    238806 -    238865    4.0 
   224   128 Op  1   3/0.706   +    CDS     239039 -    239785    872  ## COG3713 Outer membrane protein V
                               +    Term    239821 -    239849    3.0 
   225   128 Op  2     .       +    CDS     239875 -    240729    854  ## COG0656 Aldo/keto reductases, related to diketogulonate reductase
                               +    Term    240837 -    240869    0.1 
   226   129 Op  1   4/0.500   -    CDS     240777 -    241661   1014  ## COG0676 Uncharacterized enzymes related to aldose 1-epimerase
                               -    Prom    241682 -    241741    3.5 
                               -    Term    241689 -    241718    2.1 
   227   129 Op  2     .       -    CDS     241745 -    242740   1180  ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
                               -    Prom    242915 -    242974    6.2 
   228   130 Op  1   3/0.706   +    CDS     243082 -    243495    263  ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase
   229   130 Op  2   1/0.956   +    CDS     243537 -    243809    344  ## COG3139 Uncharacterized protein conserved in bacteria
                               +    Prom    244036 -    244095    4.1 
   230   131 Op  1   7/0.044   +    CDS     244179 -    245255   1220  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
   231   131 Op  2   7/0.044   +    CDS     245282 -    246661    905  ## COG0477 Permeases of the major facilitator superfamily
   232   131 Op  3   3/0.706   +    CDS     246678 -    247721    838  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
   233   131 Op  4   4/0.500   +    CDS     247742 -    248578    750  ## COG0191 Fructose/tagatose bisphosphate aldolase
   234   131 Op  5   2/0.912   +    CDS     248583 -    249530    772  ## COG0524 Sugar kinases, ribokinase family
   235   131 Op  6   4/0.500   +    CDS     249540 -    250520    806  ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
                               +    Prom    250566 -    250625    5.1 
   236   132 Tu  1     .       +    CDS     250657 -    251415    547  ## COG1349 Transcriptional regulators of sugar metabolism
                               +    Term    251477 -    251511    4.0 
                               +    Prom    251417 -    251476    2.0 
   237   133 Tu  1     .       +    CDS     251532 -    252890    741  ## COG0477 Permeases of the major facilitator superfamily
   238   134 Op  1   2/0.912   -    CDS     252983 -    253624    666  ## COG1335 Amidases related to nicotinamidase
   239   134 Op  2   4/0.500   -    CDS     253635 -    254651    951  ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
                               -    Prom    254676 -    254735    4.1 
                               -    Term    254769 -    254805    7.2 
   240   135 Op  1     .       -    CDS     254818 -    256674   1873  ## COG0616 Periplasmic serine proteases (ClpP class)
   241   135 Op  2     .       -    CDS     256617 -    256781     75  ## ECUMN_2054 hypothetical protein
                               -    Prom    256951 -    257010    3.0 
                               +    Prom    256750 -    256809    4.9 
   242   136 Tu  1     .       +    CDS     256835 -    257386    617  ## COG0778 Nitroreductase
                               +    Prom    257422 -    257481    2.2 
   243   137 Op  1   5/0.250   +    CDS     257503 -    258546   1152  ## COG0709 Selenophosphate synthase
   244   137 Op  2     .       +    CDS     258551 -    260512   1787  ## COG0550 Topoisomerase IA
                               +    Term    260549 -    260599    9.8 
                               +    Prom    260556 -    260615    6.3 
   245   138 Tu  1     .       +    CDS     260640 -    261680    296  ## B21_01719 hypothetical protein
                               +    Term    261930 -    261959   -0.2 
   246   139 Tu  1     .       -    CDS     261797 -    263140   1429  ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase
                               -    Prom    263205 -    263264    4.1 
                               +    Prom    263130 -    263189    2.7 
   247   140 Tu  1     .       +    CDS     263376 -    263648    108  ## B21_01717 hypothetical protein
                               +    Term    263875 -    263903   -1.0 
   248   141 Tu  1     .       -    CDS     263614 -    264021    373  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
                               -    Prom    264048 -    264107    4.7 
                               +    Prom    264007 -    264066    4.6 
   249   142 Tu  1     .       +    CDS     264108 -    264728    515  ## COG0558 Phosphatidylglycerophosphate synthase
                               +    Term    264765 -    264791   -1.0 
   250   143 Op  1   1/0.956   -    CDS     264737 -    266044   1441  ## COG2897 Rhodanese-related sulfurtransferase
   251   143 Op  2   3/0.706   -    CDS     266111 -    266764    194  ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc)
   252   143 Op  3   3/0.706   -    CDS     266764 -    268254   1456  ## COG4135 ABC-type uncharacterized transport system, permease component
   253   143 Op  4   2/0.912   -    CDS     268272 -    269438    996  ## COG4134 ABC-type uncharacterized transport system, periplasmic component
   254   143 Op  5   3/0.706   -    CDS     269448 -    269996    518  ## COG2128 Uncharacterized conserved protein
   255   143 Op  6     .       -    CDS     269996 -    270700    661  ## COG0398 Uncharacterized conserved protein
   256   143 Op  7     .       -    CDS     270718 -    271395    830  ## EcSMS35_1439 hypothetical protein
   257   143 Op  8   1/0.956   -    CDS     271400 -    272110    642  ## COG0398 Uncharacterized conserved protein
                               -    Prom    272130 -    272189    3.5 
   258   144 Tu  1     .       -    CDS     272277 -    273083    845  ## COG0708 Exonuclease III
                               -    Prom    273281 -    273340    5.3 
                               +    Prom    273270 -    273329    9.7 
   259   145 Op  1   7/0.044   +    CDS     273529 -    274749   1421  ## COG4992 Ornithine/acetylornithine aminotransferase
   260   145 Op  2   8/0.029   +    CDS     274749 -    275780   1044  ## COG3138 Arginine/ornithine N-succinyltransferase beta subunit
   261   145 Op  3   7/0.044   +    CDS     275777 -    277255   1280  ## COG1012 NAD-dependent aldehyde dehydrogenases
   262   145 Op  4   5/0.250   +    CDS     277252 -    278595   1226  ## COG3724 Succinylarginine dihydrolase
   263   145 Op  5   4/0.500   +    CDS     278588 -    279556    777  ## COG2988 Succinylglutamate desuccinylase
                               +    Term    279563 -    279596    5.4 
                               +    Prom    279716 -    279775    5.5 
   264   146 Tu  1     .       +    CDS     279886 -    280371    624  ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
                               +    Term    280396 -    280457   12.0 
                               +    Prom    280425 -    280484    2.5 
   265   147 Tu  1     .       +    CDS     280574 -    281149    348  ## COG3758 Uncharacterized protein conserved in bacteria
   266   148 Tu  1     .       -    CDS     281109 -    281858    529  ## COG0322 Nuclease subunit of the excinuclease complex
                               -    Prom    282019 -    282078    3.6 
                               -    Term    282148 -    282187    8.2 
   267   149 Tu  1     .       -    CDS     282226 -    283053    903  ## COG0171 NAD synthase
                               +    Prom    283095 -    283154    1.7 
   268   150 Tu  1     .       +    CDS     283255 -    283593    417  ## ECIAI39_1315 DNA-binding transcriptional activator OsmE
                               +    Term    283624 -    283659    4.5 
                               +    Prom    283726 -    283785    4.7 
   269   151 Op  1  10/0.029   +    CDS     283892 -    284212    411  ## COG1440 Phosphotransferase system cellobiose-specific component IIB
                               +    Term    284258 -    284291    1.4 
                               +    Prom    284218 -    284277    4.4 
   270   151 Op  2  13/0.015   +    CDS     284297 -    285655   1656  ## COG1455 Phosphotransferase system cellobiose-specific component IIC
   271   151 Op  3   5/0.250   +    CDS     285706 -    286056    594  ## COG1447 Phosphotransferase system cellobiose-specific component IIA
   272   151 Op  4   4/0.500   +    CDS     286067 -    286906    769  ## COG2207 AraC-type DNA-binding domain-containing proteins
   273   152 Op  1   5/0.250   +    CDS     287011 -    288363   1645  ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases
   274   152 Op  2     .       +    CDS     288376 -    289125    643  ## COG3394 Uncharacterized protein conserved in bacteria
                               +    Term    289136 -    289181    2.4 
                               -    Term    289340 -    289382    3.5 
   275   153 Tu  1     .       -    CDS     289383 -    291644   2196  ## COG0753 Catalase
                               -    Prom    291817 -    291876    2.8 
                               +    Prom    291612 -    291671    4.1 
   276   154 Tu  1     .       +    CDS     291827 -    292090    172  ## SSON_1427 cell division modulator
                               +    Term    292226 -    292270   -0.8 
                               +    Prom    292643 -    292702    6.6 
   277   155 Tu  1     .       +    CDS     292895 -    293182    110  ## JW1719 hypothetical protein
                               -    Term    293131 -    293175    7.0 
   278   156 Op  1   1/0.956   -    CDS     293186 -    294577   1806  ## COG1823 Predicted Na+/dicarboxylate symporter
   279   156 Op  2     .       -    CDS     294710 -    295300    309  ## COG1988 Predicted membrane-bound metal-dependent hydrolases
                               -    Prom    295324 -    295383    4.5 
                               -    Term    295418 -    295461   12.2 
   280   157 Tu  1     .       -    CDS     295463 -    296131    744  ## COG0637 Predicted phosphatase/phosphohexomutase
                               -    Prom    296187 -    296246    3.2 
                               +    Prom    296049 -    296108    3.3 
   281   158 Tu  1     .       +    CDS     296278 -    296814    490  ## JW1715 predicted inner membrane protein
                               +    Term    296821 -    296849    1.3 
                               -    Term    296809 -    296837    1.3 
   282   159 Tu  1     .       -    CDS     296855 -    297715    837  ## COG3001 Fructosamine-3-kinase
                               -    Prom    297735 -    297794    3.4 
   283   160 Tu  1     .       -    CDS     297821 -    298111    293  ## ECH74115_2442 hypothetical protein
   284   161 Tu  1     .       -    CDS     298212 -    299141   1010  ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
                               -    Prom    299225 -    299284    6.1 
                               +    Prom    299240 -    299299   11.7 
   285   162 Tu  1     .       +    CDS     299428 -    300186    625  ## COG3137 Putative salt-induced outer membrane protein
                               +    Term    300195 -    300231    6.2 
                               -    Term    300179 -    300221   -0.2 
   286   163 Op  1     .       -    CDS     300239 -    300451    154  ## SFV_1500 hypothetical protein
   287   163 Op  2   1/0.956   -    CDS     300518 -    301162    312  ## COG0666 FOG: Ankyrin repeat
                               -    Prom    301187 -    301246    3.4 
   288   164 Tu  1     .       -    CDS     301944 -    302417    136  ## COG0666 FOG: Ankyrin repeat
                               -    Prom    302461 -    302520    6.1 
                               +    Prom    302697 -    302756    7.1 
   289   165 Op  1  16/0.000   +    CDS     303001 -    304869   2020  ## COG0441 Threonyl-tRNA synthetase
   290   165 Op  2  36/0.000   +    CDS     304936 -    305415    665  ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35
                               +    Term    305433 -    305472    8.2 
   291   165 Op  3  46/0.000   +    CDS     305497 -    305709    358  ## PROTEIN SUPPORTED gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35
   292   165 Op  4  13/0.015   +    CDS     305762 -    306118    578  ## PROTEIN SUPPORTED gi|15802128|ref|NP_288150.1| 50S ribosomal protein L20
                               +    Term    306130 -    306161    2.1 
                               +    Prom    306325 -    306384    5.0 
   293   166 Op  1  40/0.000   +    CDS     306569 -    307552   1310  ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit
   294   166 Op  2  13/0.015   +    CDS     307567 -    309954   2924  ## COG0072 Phenylalanyl-tRNA synthetase beta subunit
   295   166 Op  3   4/0.500   +    CDS     309959 -    310258    318  ## PROTEIN SUPPORTED gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35
                               +    Term    310276 -    310304    2.1 
                               +    Prom    310274 -    310333    3.8 
   296   167 Op  1   5/0.250   +    CDS     310359 -    311339    984  ## COG4139 ABC-type cobalamin transport system, permease component
   297   167 Op  2   5/0.250   +    CDS     311402 -    311953    642  ## COG0386 Glutathione peroxidase
   298   167 Op  3   4/0.500   +    CDS     311965 -    312702    764  ## COG4138 ABC-type cobalamin transport system, ATPase component
   299   167 Op  4   5/0.250   +    CDS     312780 -    313244    273  ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1
                               +    Term    313257 -    313296   11.1 
                               +    Prom    313296 -    313355    4.3 
   300   168 Op  1   4/0.500   +    CDS     313491 -    314204    144  ## COG2200 FOG: EAL domain
   301   168 Op  2     .       +    CDS     314267 -    315703   1080  ## COG0397 Uncharacterized conserved protein
   302   169 Tu  1     .       -    CDS     315707 -    315898    181  ## COG4256 Hemin uptake protein
                               -    Prom    315927 -    315986    4.0 
                               -    Term    315989 -    316024    6.7 
   303   170 Op  1     .       -    CDS     316030 -    317076    849  ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
                               -    Prom    317167 -    317226    3.5 
   304   170 Op  2     .       -    CDS     317233 -    318066    755  ## COG1806 Uncharacterized protein conserved in bacteria
                               -    Prom    318159 -    318218   10.0 
                               +    Prom    318123 -    318182    7.9 
   305   171 Tu  1     .       +    CDS     318399 -    320777   2744  ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
                               +    Term    320785 -    320821    7.7 
                               -    Term    320773 -    320809    4.5 
   306   172 Tu  1   2/0.912   -    CDS     320834 -    322480   1210  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
                               -    Term    322490 -    322524    5.0 
   307   173 Op  1  12/0.015   -    CDS     322537 -    322830    319  ## COG2440 Ferredoxin-like protein
   308   173 Op  2   9/0.029   -    CDS     322827 -    324116   1192  ## COG0644 Dehydrogenases (flavoproteins)
   309   173 Op  3  29/0.000   -    CDS     324172 -    325110   1040  ## COG2025 Electron transfer flavoprotein, alpha subunit
   310   173 Op  4     .       -    CDS     325130 -    325894    787  ## COG2086 Electron transfer flavoprotein, beta subunit
                               -    Prom    326006 -    326065    6.1 
                               +    Prom    326035 -    326094    6.5 
   311   174 Tu  1     .       +    CDS     326210 -    327121    581  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term    327123 -    327175    6.0 
                               -    Term    327113 -    327157    8.2 
   312   175 Op  1     .       -    CDS     327164 -    328315   1453  ## COG1960 Acyl-CoA dehydrogenases
   313   175 Op  2   3/0.706   -    CDS     328329 -    329924   1589  ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase
                               -    Prom    329995 -    330054    2.9 
                               -    Term    330010 -    330062   -0.8 
   314   176 Op  1   8/0.029   -    CDS     330067 -    330825    845  ## COG0710 3-dehydroquinate dehydratase
   315   176 Op  2   4/0.500   -    CDS     330856 -    331722    873  ## COG0169 Shikimate 5-dehydrogenase
   316   176 Op  3  21/0.000   -    CDS     331734 -    332999   1003  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    333149 -    333208    3.2 
   317   176 Op  4     .       -    CDS     333226 -    334440    867  ## COG0477 Permeases of the major facilitator superfamily
   318   176 Op  5     .       -    CDS     334540 -    334896    175  ## JW1679 conserved hypothetical protein
                               -    Prom    335022 -    335081    6.3 
                               -    Term    335285 -    335317    6.3 
   319   177 Tu  1     .       -    CDS     335325 -    336437   1351  ## COG0628 Predicted permease
   320   178 Op  1   6/0.118   +    CDS     336826 -    339882   2539  ## COG0277 FAD/FMN-containing dehydrogenases
   321   178 Op  2     .       +    CDS     339879 -    340289    296  ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism
                               +    Term    340335 -    340377    6.1 
                               +    Prom    340305 -    340364    5.9 
   322   178 Op  3     .       +    CDS     340389 -    340577    312  ## SbBS512_E1886 hypothetical protein
                               +    Term    340798 -    340848   12.4 
                               +    Prom    340883 -    340942    4.5 
   323   179 Op  1   3/0.706   +    CDS     341125 -    341493    508  ## COG0316 Uncharacterized conserved protein
   324   179 Op  2  41/0.000   +    CDS     341463 -    342989   1439  ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component
   325   179 Op  3  41/0.000   +    CDS     342999 -    343745    753  ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component
   326   179 Op  4  24/0.000   +    CDS     343720 -    344991   1114  ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component
   327   179 Op  5   7/0.044   +    CDS     344988 -    346208   1321  ## COG0520 Selenocysteine lyase
   328   179 Op  6   4/0.500   +    CDS     346221 -    346637    607  ## COG2166 SufE protein probably involved in Fe-S center assembly
                               +    Prom    346648 -    346707    2.8 
   329   180 Tu  1     .       +    CDS     346786 -    347790    743  ## COG1376 Uncharacterized protein conserved in bacteria
                               +    Term    347814 -    347844    4.3 
                               -    Term    347796 -    347838   11.2 
   330   181 Tu  1     .       -    CDS     347854 -    348090    322  ## COG4238 Murein lipoprotein
                               -    Prom    348308 -    348367    5.7 
                               -    Term    348338 -    348371    4.5 
   331   182 Tu  1     .       -    CDS     348401 -    349813   1516  ## COG0469 Pyruvate kinase
                               -    Prom    350043 -    350102    8.3 
                               +    Prom    350222 -    350281    7.2 
   332   183 Tu  1     .       +    CDS     350370 -    350579    257  ## LF82_2868 uncharacterized protein YdhZ
                               +    Term    350584 -    350624    8.2 
   333   184 Op  1   5/0.250   +    CDS     351034 -    351660    434  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
   334   184 Op  2     .       +    CDS     351681 -    353783   1855  ## COG2414 Aldehyde:ferredoxin oxidoreductase
   335   184 Op  3     .       +    CDS     353796 -    354434    438  ## B21_01631 hypothetical protein
   336   184 Op  4   3/0.706   +    CDS     354498 -    355166    231  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
   337   184 Op  5     .       +    CDS     355163 -    355948    621  ## COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)
   338   184 Op  6     .       +    CDS     355952 -    356764    278  ## B21_01628 hypothetical protein
                               -    Term    356729 -    356763   -0.5 
   339   185 Tu  1     .       -    CDS     356776 -    358380    817  ## COG4529 Uncharacterized protein conserved in bacteria
                               -    Prom    358441 -    358500    3.3 
                               -    Term    358465 -    358491   -0.7 
   340   186 Tu  1     .       -    CDS     358506 -    358811    323  ## SSON_1489 hypothetical protein
                               -   TRNA     358919 -    358995   96.8  # Val GAC 0 0
                               -   TRNA     359000 -    359076   92.3  # Val GAC 0 0
                               +    Prom    359288 -    359347    3.3 
   341   187 Tu  1     .       +    CDS     359384 -    360640    878  ## COG3468 Type V secretory pathway, adhesin AidA
                               +    Term    360648 -    360685    6.1 
                               -    Term    360633 -    360674    7.2 
   342   188 Tu  1     .       -    CDS     360681 -    362054   1533  ## COG0534 Na+-driven multidrug efflux pump
                               -    Prom    362135 -    362194    5.7 
                               +    Prom    361996 -    362055    3.6 
   343   189 Tu  1     .       +    CDS     362269 -    362910    753  ## COG0307 Riboflavin synthase alpha chain
                               -    Term    362906 -    362938    4.6 
   344   190 Tu  1     .       -    CDS     362950 -    364098    975  ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases
                               -    Prom    364326 -    364385    7.3 
                               -    Term    364157 -    364189    1.0 
   345   191 Tu  1     .       -    CDS     364389 -    365600   1184  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    365632 -    365691    2.9 
                               +    Prom    365625 -    365684    4.4 
   346   192 Tu  1     .       +    CDS     365713 -    366645    593  ## COG0583 Transcriptional regulator
                               +    Term    366726 -    366778    2.1 
                               -    Term    366589 -    366635    0.5 
   347   193 Tu  1     .       -    CDS     366642 -    367667   1124  ## COG1609 Transcriptional regulators
                               -    Prom    367824 -    367883    4.0 
                               +    Prom    367877 -    367936    5.6 
   348   194 Tu  1     .       +    CDS     367966 -    368055    105  ## 
                               +    Term    368106 -    368155    2.4 
                               +    Prom    368116 -    368175    3.4 
   349   195 Tu  1     .       +    CDS     368221 -    369390   1289  ## COG2814 Arabinose efflux permease
                               -    Term    369483 -    369511   -1.0 
   350   196 Tu  1     .       -    CDS     369625 -    370206    461  ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent
                               -    Prom    370259 -    370318    4.4 
                               -    Term    370289 -    370330    8.1 
   351   197 Tu  1     .       -    CDS     370334 -    371149    518  ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins)
                               -    Prom    371203 -    371262    7.1 
                               +    Prom    371390 -    371449    4.7 
   352   198 Tu  1     .       +    CDS     371483 -    371830    525  ## COG0278 Glutaredoxin-related protein
                               +    Term    371845 -    371885    8.5 
                               -    Term    371820 -    371861   -0.8 
   353   199 Tu  1   3/0.706   -    CDS     371881 -    376497   3601  ## COG1201 Lhr-like helicases
   354   200 Tu  1     .       -    CDS     376590 -    376982    335  ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
Predicted protein(s)
>gi|223713588|gb|ACDM01000010.1| GENE     1       786  -      1154    171    122 aa, chain + ## HITS:1  COG:no KEGG:EC55989_2240 NR:ns ## KEGG: EC55989_2240 # Name: not_defined # Def: putative transposase, ISL3 family # Organism: E.coli_55989 # Pathway: not_defined # 1     122     338     459     459     238   99.0  7e-62
MSTRPPKRGLLDPWREWLKEQRECGNYNSGRIWREMVARGVTGSETIVRDAVAKWHKGWI
PPVTTAARLPSVSRVSRWLMPWRIIRGEENYAFRFISLMCEKEPELKIAQQLVLEFYRIL
KT
>gi|223713588|gb|ACDM01000010.1| GENE     2      1806  -      2840    923    344 aa, chain - ## HITS:1  COG:STM3550 KEGG:ns NR:ns ## COG: STM3550 COG1735 # Protein_GI_number: 16766836 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Salmonella typhimurium LT2 # 1     344       1     344     344     620   86.0  1e-178
MKDYLQTVTGPVAREDMGLTLPHEHLFNDLSSVVDAPCYPFSQQLVDKKVTAEIQWALKH
DPYCCADNMDRKPIEDVIFEINNFISLGGRTIVDATGSESIGRDAQALREVALKTGLNIV
ASCGPYLEKFESQRIHKTVDELATTIDKELNQGIGDTDIRAGMIGEIGVSPTFTEAEHNS
LRAASLAQINNPHVAMNIHMPGWLRRGDEVLDIVLGEMGVSPNKVSLAHSDPSGKDVAYQ
RKMLDKGVWLEFDMIGLDITFPKEGIAPGVQETADAVAHLIELGYADQLVLSHDVFLKQM
WAKNGGNGWGFVPDVFLAYLAERGVDKTILKKLCIDNPGRLLTA
>gi|223713588|gb|ACDM01000010.1| GENE     3      2843  -      3808    739    321 aa, chain - ## HITS:1  COG:STM3549 KEGG:ns NR:ns ## COG: STM3549 COG3238 # Protein_GI_number: 16766835 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1     321       1     321     323     528   93.0  1e-150
MKKNKYSTPLWMLATILAGMLSPMQSAVNGQLGHWLQDGNACAVISFASGLVVMFFIIMA
RKETRQQFAAIPSLIKNRKVPLWNWFAGLCGAMVVFSEGASASALGVATFQTALISALLL
SGLLCDRFGIGVDEKKYFTPYRIIGALFAVIATIFVVSPQWHSTSFILLAILPFLAGLLA
GWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGTALAIRVALGHVTVQLPDVWWMYLGGP
LGLMSIGLMAILVRGLGLLMLGVASTAGQLLGSVLIDVLIPSLGNTVYLVTIIGTLFALV
GAIVTTIPEYRASKTMKKMEV
>gi|223713588|gb|ACDM01000010.1| GENE     4      3865  -      4623    767    252 aa, chain - ## HITS:1  COG:STM3548 KEGG:ns NR:ns ## COG: STM3548 COG5426 # Protein_GI_number: 16766834 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Salmonella typhimurium LT2 # 1     252       1     252     253     447   81.0  1e-126
MNNTKKSLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLQCLKNSQVDVTYMPAHT
VQIAFPEDVAQLEQYDAIVISDIGSNTFLLQNDTFYQLRIKPNALELIKEYVNNGGGLLM
IGGYLSFMGIEAKANYKNTVLADVLPVTMLDGDDRVEKPEGVIAQPSQPEHPVIKGFSEY
PFFLGYNRAIAKENAEVVLTINNAPLLVFGNYHNGKIACFMSDCSPHWGTQQFMSWPFYT
ALWVNILTHIAR
>gi|223713588|gb|ACDM01000010.1| GENE     5      4735  -      5847    397    370 aa, chain - ## HITS:1  COG:STM3547_2 KEGG:ns NR:ns ## COG: STM3547_2 COG0524 # Protein_GI_number: 16766833 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 94     326       2     234     312     379   80.0  1e-105
MKFERHHEILKRLSKFGSVKVSDLSNSLNVTKETIRSDLNELARLGYLTRCHGGAFIVLD
SLDTIAKNEIAYALENYDTAQGIKKGHSTMKSQVCVIGSFNVDIISYLPRLPTIGESLLA
SNFIFSPGGKGCNQALAASFADTDVYFITKVGTDHFSDYAINFMNSSKIYKNIIYQTKET
QTGTATILVNEGTGDNVIAIYPGANMTMSSDEITIQKEAIINSDVILLQLETNYTALQQA
ITLAQKNSIPVIINPAPYNDIVNELIQDVDYITPNETEAGLLSGIDVHDLESAKRAAEAI
HNKGVKNTVITLGSKGSLAFDGKKFIRQRFQRSLKIRQEPGMRLTALWHQDLRKENHWNQ
HCVMPAPLHP
>gi|223713588|gb|ACDM01000010.1| GENE     6      6043  -      6159     90     38 aa, chain - ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      38     477     518     537      67   78.0  5e-12
MFFDGERSALLYGLIGTCLLNDIDPEEYLRHILSVLPE
>gi|223713588|gb|ACDM01000010.1| GENE     7      7468  -      7602     63     44 aa, chain + ## HITS:1  COG:no KEGG:ECP_1964 NR:ns ## KEGG: ECP_1964 # Name: not_defined # Def: putative thioesterase # Organism: E.coli_536 # Pathway: not_defined # 1      41       1      41     240      88   90.0  6e-17
MSNISLYCLPYSGGSAAMYYKWRNVLSDNITLKPLEPVGKGNEQ
>gi|223713588|gb|ACDM01000010.1| GENE     8      7592  -      8824    505    410 aa, chain + ## HITS:1  COG:ECs1386 KEGG:ns NR:ns ## COG: ECs1386 COG3969 # Protein_GI_number: 15830640 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli O157:H7 # 1     410       1     410     410     768   91.0  0
MNSDFSAKKILTGEDVLCAAVHRIEWLFETFSSVCLSFSGGKDSTVLLHLTADVARRKKR
RFSVLFIDWEAQYQCTIAHILKMREMYRDVTETFYWVALPLTTVNGVSQFQPEWICWEPG
VEWVRQPPDDAITDMSYFPFYRYAMTFEEFVPAFSSWFAGNRCGVAILTGVRADESLNRF
VGLVSQRKLRYADDKPWTTASPEGFYYTLYPLYDWKARDIWIYNARTRAIYNPLYDLMYR
AGVPLRNMRVCEPFGPEQRKGLWLYHVLEPETWARMCERVSGAASGALYANESGAYFALR
KRITKPPHHTWRSYAMFLLDVMPERTAEHYRNKIAVYLRWYQTRGFPDDIPDEQENDLGS
RDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLQRMKERRKEWGIL
>gi|223713588|gb|ACDM01000010.1| GENE     9      8809  -      9453    329    214 aa, chain + ## HITS:1  COG:ECs1387 KEGG:ns NR:ns ## COG: ECs1387 COG1475 # Protein_GI_number: 15830641 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     214       1     212     212     381   89.0  1e-106
MGDSVTPEVEVLSNMIRQYFSQERSEEETIRALNHLRRVLHEVSPFAQEPVDCVLWVKAN
EVVANDYNPNVMSSSEKKLLKHSLEQDGFTQPVVVSEEKEHYLVVDGFHRQLLGRKADTR
KRLKGWLPVACINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTDERIGT
ELGMDQDEVLRLKQISGLTELFQEENFSPAWTVR
>gi|223713588|gb|ACDM01000010.1| GENE    10      9824  -     11002    389    392 aa, chain - ## HITS:1  COG:ECs2792 KEGG:ns NR:ns ## COG: ECs2792 COG1629 # Protein_GI_number: 15832046 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 1     392     324     715     715     733   99.0  0
MIQALTVHNKTDTHDKQYTQAVTLQSHFSLPANNELVTGAQYKQDRVNQRSGGMTSSKSL
TGFINKETRTRSYYESEQSTVSLFAQNDWQFADHWTWTMGVRQYWLSSKLTRGDGVSYTA
GIISDTSLARESASDHEMVTSTSLRYSGFDNLELRAAFAQGYVFPTLSQLFMQTSAGGSV
TYGNPDLKAEHSNNFELGARYNGNQWLIDSAVYYSEAKDYIASLICDGSIVCNGNTNSSR
SSYYYYDNIDRAKTWGLEISAEYNGWVFSPYISGNLIRRQYETSTLKTTNTGEPAINGRI
GLKHTLVMGQANIISDVFIRAASSAKDDSNGTETNVPGWATLNFAVNTEFGNEDQYRINL
ALNNLTDKRYRTAHETIPAAGFNAAIGFVWNF
>gi|223713588|gb|ACDM01000010.1| GENE    11     11029  -     11970    265    313 aa, chain - ## HITS:1  COG:Z3159 KEGG:ns NR:ns ## COG: Z3159 COG1629 # Protein_GI_number: 15802478 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 EDL933 # 1     296       5     300     719     564   98.0  1e-160
MLYNIPCRIYILSTLSLCISGIVSTATATSSETKISNEETLVVTTNRSASNLWESPATIQ
VIDQQTLQNSTNASIADNLQDIPGVEITDNSLAGRKQIRIRGEASSRVLILIDGQEVTYQ
RAGDNYSVGLLIDESALERVEIVKGPYSVLYGSQAIGGIVNFITKKGGNKLASGVVKAVY
NSATAGWEESIAVQGSIGGFDYRINGSYSDQGNRDTPDGRLPNTNYRNNSQGVWLGYNSG
NHRFGLSLDRYRLATQTYYEDPDGSYEAFSVKIPKLEREKVGVFYDTDVDGDYLKKFIST
RMSRPSSANLPTK
>gi|223713588|gb|ACDM01000010.1| GENE    12     13013  -     13177     78     54 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_1129 NR:ns ## KEGG: EcSMS35_1129 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      54       1      54      54      82  100.0  3e-15
MPLITHLLNVEELSRLLKNVALSVINLFILDDVSEKMEYIPDWVVVTRLNIWWR
>gi|223713588|gb|ACDM01000010.1| GENE    13     13645  -     14187    440    180 aa, chain + ## HITS:1  COG:ECs2788 KEGG:ns NR:ns ## COG: ECs2788 COG2087 # Protein_GI_number: 15832042 # Func_class: H Coenzyme transport and metabolism # Function: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 # 1     180       2     181     181     355   99.0  2e-98
MILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARIEHHRQGRPAHWRTVERW
QHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINAEIQSLIA
ACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQQLAAAANEVWLVVSGIGVKIK
>gi|223713588|gb|ACDM01000010.1| GENE    14     14184  -     14927    862    247 aa, chain + ## HITS:1  COG:ECs2787 KEGG:ns NR:ns ## COG: ECs2787 COG0368 # Protein_GI_number: 15832041 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     247       1     247     247     416   99.0  1e-116
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCG
APLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFV
VLAKILVLSELALRGEPILASLAAACAISRGTAALLMYRHRYAREEGLGNVFIGKIDGRQ
TCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGEL
VFLLALL
>gi|223713588|gb|ACDM01000010.1| GENE    15     14939  -     16018    710    359 aa, chain + ## HITS:1  COG:ECs2786 KEGG:ns NR:ns ## COG: ECs2786 COG2038 # Protein_GI_number: 15832040 # Func_class: H Coenzyme transport and metabolism # Function: NaMN:DMB phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1     359       1     359     359     642  100.0  0
MQTLANLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALGVQLAGMPGLNGIPHVGK
KAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVLAAQAGANVHVIDVGIDTA
EPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYTRELAKNGVTLFGVGELGMAN
TTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVVRRAITLNQPNPQDGVNVLAKVG
GFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAACQMSPAIKPYLIPSHLSAEKGARIA
LSHLGLEPFLNMDMRLGEGSGAALAMPIIEAACAIYNNMGELAASKIVLPGNTTSDLNS
>gi|223713588|gb|ACDM01000010.1| GENE    16     16083  -     17015    636    310 aa, chain + ## HITS:1  COG:ECs2785 KEGG:ns NR:ns ## COG: ECs2785 COG1376 # Protein_GI_number: 15832039 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     310       1     310     310     602   99.0  1e-172
MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSLTVTVPDHNTQPLETFAAQYGQG
LSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVF
PIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLY
AIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
PDGSKWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPV
QISSGSRQMF
>gi|223713588|gb|ACDM01000010.1| GENE    17     17472  -     18389    493    305 aa, chain + ## HITS:1  COG:ECs2784 KEGG:ns NR:ns ## COG: ECs2784 COG0583 # Protein_GI_number: 15832038 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     534  100.0  1e-152
MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA
GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE
VVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDCPGQSVD
VNAIAQMNLFLPSDYSAVRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPE
SAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ
WQLVS
>gi|223713588|gb|ACDM01000010.1| GENE    18     18563  -     19441    614    292 aa, chain + ## HITS:1  COG:ECs2783 KEGG:ns NR:ns ## COG: ECs2783 COG0583 # Protein_GI_number: 15832037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     292      25     316     316     575  100.0  1e-164
MLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLA
DLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLHNGEAD
IGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQITPLTLESIAKWPLITYRQGITGR
SRIDDAFARKGLLADIILSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEKNLIRLDTRHL
FDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQVMENSEEEIDYQI
>gi|223713588|gb|ACDM01000010.1| GENE    19     19748  -     21202    826    484 aa, chain + ## HITS:1  COG:yeeO KEGG:ns NR:ns ## COG: yeeO COG0534 # Protein_GI_number: 16129928 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli K12 # 1     484      64     547     547     873   99.0  0
MNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIFMENACVLLMGVLSTFLVSWLG
KDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARVATRQSLVIMTLFAV
LLATLIHHFGEQIIDFVAGDATTDVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTK
IPLLINGSLNILNIIISGILIYGLFSWPGLGFVGAGLGLTISRYIGAVAILWVLAIGFNP
ALRISLKSYFKPLNFSIIWEVMGIGIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIA
FSIAALINLPGSALGSASTIITGRRLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFA
GVMASFYTQDPQVKHVVVILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWG
CRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKP
VVSE
>gi|223713588|gb|ACDM01000010.1| GENE    20     21832  -     22548    714    238 aa, chain - ## HITS:1  COG:yeeN KEGG:ns NR:ns ## COG: yeeN COG0217 # Protein_GI_number: 16129927 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     238       1     238     238     441  100.0  1e-124
MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP
KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN
IGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRDVTEEEGNIVIYTEPTDLHKG
IAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDVQKVYHNVANL
>gi|223713588|gb|ACDM01000010.1| GENE    21     22891  -     24345   1173    484 aa, chain - ## HITS:1  COG:ECs2779 KEGG:ns NR:ns ## COG: ECs2779 COG0775 # Protein_GI_number: 15832033 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Escherichia coli O157:H7 # 1     484       1     484     484     999  100.0  0
MNNKGSGLTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGLFVYPSLTVT
WDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLTLLYQDYGAHISVQPSQHE
IPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTEFSPLSHFDARRVD
FSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPYIALSCAGGNWIT
AETEAPEEAISDLAWKKHQMPAWHLITADGQGITLVNIGVGPSNAKTICDHLAVLRPDVW
LMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSG
RPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESATIAAQGYRFRVPY
GTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNE
PPFR
>gi|223713588|gb|ACDM01000010.1| GENE    22     24447  -     25763   1019    438 aa, chain - ## HITS:1  COG:ECs2778 KEGG:ns NR:ns ## COG: ECs2778 COG0477 # Protein_GI_number: 15832032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     438       1     438     438     798   98.0  0
MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA
MGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTI
GWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGL
VSLISMMTTDVQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIP
VIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSC
LTIPCFAWLADRFGRRRVYITGALIGMLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV
VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLA
GCLISAITALLMKDNQRA
>gi|223713588|gb|ACDM01000010.1| GENE    23     26078  -     27130    279    350 aa, chain + ## HITS:1  COG:ECs2777 KEGG:ns NR:ns ## COG: ECs2777 COG0859 # Protein_GI_number: 15832031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 1     350       1     350     350     646   96.0  0
MFLVSLLRRIAFSYYDYKAYNFNIEKTDFVVIHIPDQIGDAMAIFPVIRALELHKIKHLL
IVTSTINLEVFNALKLEQTKLTLVTMTMQDHATLKEIKDLAKNITLQYGTPDLCIEAMRK
KNLKTMIFISQLKAKTNFQVVGLTMKCYSPLCKNASRMDQNLRTPVPMTCAFMMREAGFP
VVRSIYELPLSDDVLDEVREEMRSLGSYIALNLDGSSQERTFSLSIAENLIAKIQSETDI
PIVIVYGPKGEDKARALVDCYNNVYRLSLSPSIKRSAAIIKDAYIAITPDTSILHMASAY
NTPVVAIYADYKTRWPAMADVSESVVVGQKIDNISLDEFAKALKSVLARI
>gi|223713588|gb|ACDM01000010.1| GENE    24     27258  -     27905     52    215 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1065 NR:ns ## KEGG: APECO1_1065 # Name: not_defined # Def: putative autotransporter # Organism: E.coli_APEC # Pathway: not_defined # 1     215     438     652     652     358   98.0  6e-98
MQTVDISLVAGPADASQSILKNNQSSLKGDFTDSAELHLVLHDISGNPIKDSEGMEFVQS
GTNVPYMKISAIDYSQNINGDYKATVTGDGEGIATLIPVLNGVHQAGLSTTIEFISAETR
PMTGTVSVNSANLPTASFPSQGFTGAYYQLNNDNFAPGKTAADYSFSSSASWVGVDATGK
VTFKNDGDSNTVIITAPPRSGGAIYQTVPPESRSV
>gi|223713588|gb|ACDM01000010.1| GENE    25     27954  -     29216    447    420 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1065 NR:ns ## KEGG: APECO1_1065 # Name: not_defined # Def: putative autotransporter # Organism: E.coli_APEC # Pathway: not_defined # 1     420       1     420     652     607   99.0  1e-172
MKANFTLSDGDKAVTDADGKAKVTLKGTKAGAHTVTASMVGGKSEQLVVNFTADTLTAQV
NLNVTEDNFIANNIGMTRLQATVTDGNGNPVEGIKVNFRGTSVTLSSTSVETDDQVFAEI
LVTSTEVGLKTVSASLADKPTEVISRLLNAKVDVNSATITSQEIPEGQVMVAQDIAVKAH
VNDQFGNPVTHQPATFSAAPSSQMIISQNTVSTNTQGVAEVTMTSERNGSYTVKASLANG
ASLEKQLEAIDEKLTLTSSPLIGVNAPKGATLTATLTSANGTPVEGQVINFSVTLEGATL
SGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNPSTAHVASFIAD
PSTIAATNSDLSTLKATVEDGSGNLIEGLTVYFALKSGSTTLTSLTAVTDQNGIATTNVR
>gi|223713588|gb|ACDM01000010.1| GENE    26     29252  -     29422     60     56 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_1068 NR:ns ## KEGG: ECIAI39_1068 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1      56       1      56      56      76  100.0  3e-13
MTATLENGDSMQQTVNYVPNVTNAEITLAASKDPVIADNNDLTTLTAPSLIQRAMR
>gi|223713588|gb|ACDM01000010.1| GENE    27     29349  -     30098    461    249 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1064 NR:ns ## KEGG: APECO1_1064 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     249      20     268     268     511   99.0  1e-144
MSKKYQPLLITHYMSTWVTITEAVEITTKAIKQKITPSDIYRHALSGNILLLVYFQSPVI
LKKIQTFNGKIKFRQFVGDLLDKLCMLDRDGFIYGQNLRLCTEARYICPVQQIIDTPLLR
KLNQFRTFVRNVRPGDELDVQAQVSEKNLTPPPGNSSGNLEQQIASTSQLIGSLLAEDMN
SEQAANIARGWASSQASGVMTDWLSRFGTARITLGVDEDFSLKNSRDGNPRKWRFDATNS
ELCAERHEC
>gi|223713588|gb|ACDM01000010.1| GENE    28     30749  -     32770   1649    673 aa, chain - ## HITS:1  COG:YPO1906 KEGG:ns NR:ns ## COG: YPO1906 COG1629 # Protein_GI_number: 16122154 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 1     673       1     673     673    1276   99.0  0
MKMTRLYPLALGGLLLPAIANAQTSQQDESTLVVTASKQSSRSASANNVSSTVVSAPELS
DAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQDFYNPAVTLYVDGVPQLSTNT
IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFN
LSGPIQDGLLYGSVTLLRQVDDGDMINPATGSDDLGGTRASIGNVKLRLAPDDQPWEMGF
AASRECTRATQDAYVGWNDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYTTDDWVFNLIS
AWQQQHYSRAFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFGLYRQNTREKLNSA
YDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMLGNPF
GDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFVAEKSIN
YELGTRYETADVTLQAATFYTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPG
WSWDINGNVIRSEFTNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALMPRLAVNLVGP
HYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYMNGSSAVAQVNM
GRTVGINTRIDFF
>gi|223713588|gb|ACDM01000010.1| GENE    29     32901  -     34478    997    525 aa, chain - ## HITS:1  COG:YPO1907 KEGG:ns NR:ns ## COG: YPO1907 COG1021 # Protein_GI_number: 16122155 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Yersinia pestis # 1     525       1     525     525    1036   99.0  0
MNSSFESLIEQYPLPIAEQLRHWAARYASRIAVVDAKGSLTYSALDAQVDELAAGLSSLG
LRSGEHVIVQLPNDNAFVTLLFALLRLGVIPVLAMPSQRALDIDALIELAQPVAYVIHGE
NHAELARQMAHKHACLRHVLVAGETVSDDFTPLFSLHGERQAWPQPDVSATALLLLSGGT
TGTPKLIPRRHADYSYNFSASAELCGISQQSVYLAVLPVAHNFPLACPGILGTLACGGKV
VLTDSASCDEVMPLIAQERVTHVALVPALAQLWVQAREWEDSDLSSLRVIQAGGARLDPT
LAEQVIATFDCTLQQVFGMAEGLLCFTRLDDPHATILHSQGRPLSPLDEIRIVDQDENDV
APGETGQLLTRGPYTISGYYRAPAHNTQAFTAQGFYRTGDNVRLDEVGNLHVEGRIKEQI
NRAGEKIAAAEVESALLRLAEVQDCAVVAAPDTLLGERICAFIIAQQVPTDYQQLRQQLT
RMGLSAWKIPDQIEFLDHWPLTAVGKIDKKRLTALAVDRYRHSAQ
>gi|223713588|gb|ACDM01000010.1| GENE    30     34482  -     35285    206    267 aa, chain - ## HITS:1  COG:YPO1908 KEGG:ns NR:ns ## COG: YPO1908 COG3208 # Protein_GI_number: 16122156 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted thioesterase involved in non-ribosomal peptide biosynthesis # Organism: Yersinia pestis # 1     267       1     267     267     525   99.0  1e-149
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRH
LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS
GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQELMSLFLPLLRADFYATESYH
YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF
FTQIVRHFPHAFSAMTAWQKQPSTSER
>gi|223713588|gb|ACDM01000010.1| GENE    31     35282  -     36382    442    366 aa, chain - ## HITS:1  COG:YPO1909 KEGG:ns NR:ns ## COG: YPO1909 COG4693 # Protein_GI_number: 16122157 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Oxidoreductase (NAD-binding), involved in siderophore biosynthesis # Organism: Yersinia pestis # 1     366       1     366     366     699   99.0  0
MMPSASPKQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTS
PEQITRMPDIACIVVRSTVAGGTGTQLARHFLTRGVHVIQEHPLHPDDISSLQTLAQEQG
CCYWVNTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDA
AAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSL
EASYGPVIWSSSLFVADHQENAHSLYRRPEILRDLPGLMRSAAPLSWRDCCETVGPEGVS
WLLHQLRSNLAGEHPPAACQSVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFYND
DDKEAL
>gi|223713588|gb|ACDM01000010.1| GENE    32     36379  -     45858   5763   3159 aa, chain - ## HITS:1  COG:YPO1910_1 KEGG:ns NR:ns ## COG: YPO1910_1 COG3321 # Protein_GI_number: 16122158 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Yersinia pestis # 1    1911       1    1911    1911    3727   99.0  0
MDNLRFSSAPTADSIDASIAQHYPDCEPVAVIGYACHFPESPDGETFWQNLLEGRECSRR
FTREELLAVGLDAAIIDDPHYVNIGTVLDNADCFDATLFGYSRQEAESMDPQQRLFLQAV
WHALEHAGYAPGAVPHKTGVFASSRMSTYPGREALNVTEVAQVKGLQSLMGNDKDYIATR
AAYKLNLHGPALSVQTACSSSLVAVHLACESLRAGESDMAVAGGVALSFPQQAGYRYQPG
MIFSPDGHCRPFDASAEGTWAGNGLGCVVLRRLKDALLSGDPIISVILSSAVNNDGNRKV
GYTAPSVAGQQAVIEEALMLAAIDDRQVGYIETHGTGTPLGDAIEIEALRNVYAPRPQDR
RCALGSVKSNMGHLDTAAGIAGLLKTVLAVSRGQIPPLLNFHTPNPALKLEESPFTVPVS
AQAWQDEMRYAGVSSFGIGGTNCHMIVASLPDALNARLPNTDGGRKSTALLLSAASDSAL
RRLATDYAGALRKNADASDLAFTALHARRLDLPFRLAVPLNRETADALSTWASEKSGAQV
YSGHGASGKQVWLFTGQGSHWRTMGQTMYQHSTAFADTLDRCFSACSEMLTPSLREAMFN
PDSAQLDNMAWAQPAIVAFEIAMAAHWRAEGLKPDFAIGHSVGEFAAAVVCGHYTIEQVM
PLVCRRGALMQQCASGAMVAVFADEDTLMPLARQFELDLAANNGTQHTVFSGPEARLAVF
CATLSQHDINYRRLSVTGAAHSALLEPILDRFQDACAGLHAEPGQIPIISTLTADVIDES
TLNQADYWRRHMRQPVRFIQSIQVAHQLGARVFLEMGPDAQLVACGQREYRDNAYWIASA
RRNKEASDVLNQALLQLYAAGVALPWADLLAGDGQRIAAPCYPFDTERYWKEGVSPACEP
ADAALSAGLEVASRAATALDLPRLEALKQCATRLHAIYVDQLVQRCTGDAIENGVDAMTI
MRRGRLLPRYQQLLQRLLNNCVVDGDYRCTDGRYVRARPIEHQQRESLLTELAGYCEGFQ
AIPDTIARAGDRLYEMMSGAEEPVAIIFPQSASDGVEVLYQEFSFGRYFNQIAAGVLRGI
VQTRQPRQPLRILEVGGGTGGTTAWLLPELNGVPALEYHFTDISALFTRRAQQKFADYDF
VKYSELDLEKEAQSQGFQAQSYDLIVAANVIHATRHIGRTLDNLRPLLKPGGRLLMREIT
QPMRLFDFVFGPLVLPLQDLDAREGELFLTTAQWQQQCRHAGFSKVAWLPQDGSPTAGMS
EHIILATLPGQAVSAVTFTAPSEPVLGQALTDNGDYLADWSDCAGQPERFNARWQEAWRL
LSQRHGDALPVEPPPVAAPEWLGKVRLSWQNEAFSRGQMRVEARHPAGEWLPLSPAAPLP
APQTHYQWRWTPLNVASIDHPLTFSFSAGTLARSDELAQYGIIHDPHASSRLMIVEESED
TLALAEKVIAALTASAAGLIVVTRRAWRVEENEALSASHHALWALLRVAANEQPERLLAA
IDLAENTPWETLHQGLSAVSLSQRWLAARGDTLWLPSLSPNTGCAAELPANVFTGDSRWH
LVTGAFGGLGRLAVNWLREKGARRIALLAPRVDESWLRDVEGGQTRVCRCDVGDAGQLAT
VLDDLAANGGIAGAIHAAGVLADAPLQELDDHQLAAVFAVKAQAASQLVQTLRNHDGRYL
ILYSSAAATLGAPGQSAHALACGYLDGLAQQFSTLDAPKTLSVAWGAWGESGRAATPEML
ATLASRGMGALSDAEGCWHLEQAVMRGAPWRLAMRVFTDKMPPLQQALFNISATEKAATP
VIPPADDNAFNGSLSDETAVMAWLKKRIAVQLRLSDPASLHPNQDLLQLGMDSLLFLELS
SDIQHYLGVRINAERAWQDLSPHGLTQLICSKPEATPAASQPEVLRHDADERYAPFPLTP
IQHAYWLGRTHLIGYGGVACHVLFEWDKRHDEFDLAILEKAWNQLIARHDMLRMVVDADG
QQRILATTPEYHIPRDDLRALSPEEQRIALEKRRHELSYRVLPADQWPLFELVVSEIDDC
HYRLHMNLDLLQFDVQSFKVMMDDLAQVWRGETLAPLAITFRDYVMAEQARRQTSAWHDA
WDYWQEKLPQLPLAPELPVVETPPETPHFTTFKSTIGKTEWQAVKQRWQQQGVTPSAALL
TLFAATLERWSRTTTFTLNLTFFNRQPIHPQINQLIGDFTSVTLVDFNFSAPVTLQEQMQ
QTQQRLWQNMAHSEMNGVEVIRELGRLRGSQRQPLMPVVFTSMLGMTLEGMTIDQAMSHL
FGEPCYVFTQTPQVWLDHQVMESDGELMFSWYCMDNVLEPGAAEAMFNDYCAILQAVIAA
PESLKTLASGIAGHIPRRRWPLNAQADYDLRDIEQATLEYPGIRQARAEITEQGALTLDI
VMADDPSPSAAMPDEHELTQLALPLPEQAQLDELEATWRWLEARALQGIAATLNRHGLFT
TPEIAHRFSAVVQALSAQASHQRLLRQWLQCLTEREWLIREGESWRCRIPLSEIPEPQEA
CPQSQWSQALAQYLETCIARHDALFSGQCSPLELLFNEQHRVTDALYRDNPASACLNRYT
AQIAALCSAERILEVGAGTAATTAPVLKATRNTRQSYHFTDVSAQFLNDARARFHDESQV
SYALFDINQPLDFTAHPEAGYDLIVAVNVLHDASHVVQTLRRLKLLLKAGGRLLIVEATE
RNSVFQLASVGFIEGLSGYRDFRRRDEKPMLTRSAWQEVLVQAGFANELAWPAQESSPLR
QHLLVARSPGVNRPDKKAVSRYLQQRFGTGLPILQIRQREALFTPLHAPTEPAKPTPVAG
GNSALEKQVAELWQSLLSRPVARHHDFFELGGDSLMATRMVAQLNRRGIARANLQDLFNH
STLSDFCAHLQAATSGEDNPIPLCQGDGEETLFVFHASDGDISAWLPLANALNRRVFGLQ
AKSPQRFATLDQMIDEYVGCIRRQQPHGPYVLAGWSYGAFLAAGAAQRLYAKGKQVRMVL
IDPVCRQDFCCENRAALLRLLAEGQTPLALPEHFDQQTPDSQLADFISLAKTVGMVSQNL
TLQAAETWLDNIAHLLRLLTEHTPGESVPVPCLMVYAAGRPARWTPAETEWQGWINNADD
AVIEASHWQIMMEAPHVQACAQHITRWLCATSTQPENTL
>gi|223713588|gb|ACDM01000010.1| GENE    33     45946  -     52053   3464   2035 aa, chain - ## HITS:1  COG:YPO1911_2 KEGG:ns NR:ns ## COG: YPO1911_2 COG1020 # Protein_GI_number: 16122159 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Yersinia pestis # 111    1491       1    1381    1381    2730   99.0  0
MISGAPSQDSLLPDNRHAADYQQLRERLIQELNLTPQQLHEESNLIQAGLDSIRLMRWLH
WFRKNGYRLTLRELYAAPTLAAWNQLMLSRSPENAEEETPPDESSWPNMTESTPFPLTPV
QHAYLTGRMPGQTLGGVGCHLYQEFEGHCLTASQLEQAITTLLQRHPMLHIAFRPDGQQV
WLPQPYWNGVTVHDLRHNDAESRQAYLDALRQRLSHRLLRVEIGETFDFQLTLLPDNRHR
LHVNIDLLIMDASSFTLFFDELNALLAGESLPAIDTRYDFRSYLLHQQKINQPLRDDALA
YWLAKASTLPPAPVLPLACEPATLCEVRNTRRRMIVPATRWHAFSNRAGEYGVTPTMALA
TCFSAVLARWGGLTRLLLNITLFDRQPLHPAVGAMLADFTNILLLDTACDGDTVSNLARK
NQLTFTEDWEHRHWSGVELLRELKRQQRYPHGAPVVFTSNLGRSLYSSRAESPLGEPEWG
ISQTPQVWIDHLAFEHHGEVWLQWDSNDALFPPALVETLFDAYCQLINQLCDDESAWQKP
FADMMPASQRAIRERVNATGAPIPEGLLHEGIFRIALQQPQALAVTDMRYQWNYHELTDY
ARRCAGRLIECGVQPGDNVAITMSKGAGQLVAVLAVLLAGAVYVPVSLDQPAARREKIYA
DASVRLVLICQHDASAGSDDIPVLAWQQAIEAEPIANPVVRAPTQPAYIIYTSGSTGTPK
GVVISHRGALNTCCDINTRYQVGPHDRVLALSALHFDLSVYDIFGVLRAGGALVMVMENQ
RRDPHAWCELIQRHQVTLWNSVPALFDMLLTWCEGFADATPENLRAVMLSGDWIGLDLPA
RYRAFRPQGQFIAMGGATEASIWSNACEIHDVPAHWRSIPYGFPLTNQRYRVVDEQGRDC
PDWVPGELWIGGIGVAEGYFNDPLRSEQQFLTLPDERWYRTGDLGCYWPDGTIEFLGRRD
KQVKVGGYRIELGEIESALSQLAGVKQATVLAIGEKEKTLAAYVVPQGEAFCVTDHRNPA
LPQAWHTLAGTLPCCAISPEISAEQVADFLQHRLLKLKPGHTAGADPLPLMNSLAIQPRW
QAVVERWLAFLVTQRRLKPAAEGYQVCAGEEREDEHPHFSGHDLTLSQILRGARNELSLL
NDAQWSPESLAFNHPASAPYIQELATICQQLAQRLQRPVRLLEVGTRTGRAAESLLAQLN
AGQIEYVGLEQSQEMLLSARQRLAPWPGARLSLWNADTLATHAHSADIIWLNNALHRLLP
EDPGLLATLQQLAVPGALLYVMEFRQLTPSALLSTLLLTNGQPEALLHNSADWAALFSAA
GFNCQHGDEVAGLQRFLVQCPDRQVRRDPRQLQAALAGSLPGWMVPQRIVFLDALPLTAN
GKIDYQALKRRHTPEAENPAEADLPQGDIEKQVAALWQQLLSTGNVTRETDFFQQGGDSL
LATRLTGQLHQAGYEAQLSDLFNHPRLADFAATLRKTDVPVEQPFVHSPEDRYQPFALTD
VQQAYLVGRQPGFALGGVGSHFFVEFEIADLDLTRLETVWNRLIARHDMLRAIVRDGQQQ
VLEQTPPWVIPAHTLHTPEEALRVREKLAHQVLNPEVWPVFDLQVGYVDGMPARLWLCLD
NLLLDGLSMQILLAELEHGYRYPQQLLPPLPVTFRDYLQQPSLQSPNPDSLAWWQAQLDD
IPPAPALPLRCLPQEVETPRFARLNGALDSTRWHRLKKRAADAHLTPSAVLLSVWSTVLS
AWSAQPEFTLNLTLFDRRPLHPQINQILGDFTSLMLLSWHPGESWLHSAQSLQQRLSQNL
NHRDVSAIRVMRQLAQRQNVPAVPMPVVFTSALGFEQDNFLARRNLLKPVWGISQTPQVW
LDHQIYESEGELRFNWDFVAALFPAGQVERQFEQYCALLNRMAEDESGWQLPLAALVPPV
KHAGQCAERSPRVCPEHSQPHIAADESTVSLICDAFREVVGESVTPAENFFEAGATSLNL
VQLHVLLQRHEFSTLTLLDLFTHPSPAALADYLAGVATVEKTKRPRPVRRRQRRI
>gi|223713588|gb|ACDM01000010.1| GENE    34     52244  -     53203    509    319 aa, chain - ## HITS:1  COG:YPO1912 KEGG:ns NR:ns ## COG: YPO1912 COG2207 # Protein_GI_number: 16122160 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Yersinia pestis # 1     319       1     319     319     647   99.0  0
MTESPQTQSEISIHQLVVGKPANDGNIPAQCELLRCSLQEGMDILLWRGHFARPETLQLH
DDLGRINFSCILEGTSRFAIQGLRRHTDWELARNRHYITHTPDCRGSASYCGRFESITLS
FSPETLALWVPDISAVIKNKIDSHCCCQQQRCNAETHLTAQALRHALMRMHGGFSHEQKP
STLWLQGQSLVMLSLVLDEHREDASCLSCHFNPMERQKLLRAKDLLLADLTQAPGVAELA
RESGLSVLKIKRGFRVLFNNSVYGLFQAERMQEARRRLANGNTSVMTVAADLGYANASHF
SAAFQKQFGVTPSTFKRGM
>gi|223713588|gb|ACDM01000010.1| GENE    35     53460  -     55172    194    570 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 330     535     295     507     563 79  31 2e-13
MALAGLAALTSLGALLFLAWSLRDIRATPDAIPAWPLGGVIGCVVLTFVLRLQAFNTSHY
AAFHLENILRSRLARKALQLPPGVLQQMGSGSVAKVMLDDVKSLHIFVADSTPLYARAII
MPLATIVILFWLDWRLAIATLGVLAFGSVVLVLARQRSENMAQRYHKAREQVSAAVIEFV
QAMPVVRTFDSGSTSFLRYQRALEEWVDVLKTWYRKAGFSARFSFSILNPLPTLFVLIWS
GYGLLHYGSFDFIAWVAVLLLGSGMAEAVMPMMMLNNLVAQTRLSIQRIYQVLAMPELSL
PQSDQQPQEASITFEQVSFHYPQARTGAALQEVSFHVPAGQIVALVGPSGAGKSTVARLL
LRYADPDKGHIRIGGVDLRDMQTDTLMKQLSFVFQDNFLFADTIANNIRLGAPDTPLEAV
IAAARVAQAHDFISALPEGYNTRVGERGVFLSGGQRQRITIARALLQDRPILVLDEATAF
ADPENEAALIKALAAAMRGRTVIMVAHRLSMVTQADVILLFSDGQLREMGNHTQLLAQGG
LYQRLWQHYQQAQHWVPGGTQEEVVENERQ
>gi|223713588|gb|ACDM01000010.1| GENE    36     55159  -     56961    218    600 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 337     559      16     242     329 88  30 3e-16
MKDNNPADNLAWRVIWRQLISSVGSQARMLRRSMLALLLAAFMQGIAFACLYPIIDALLR
GDAPQLLNWAMAFSVAAIVTLVLRWYGLGFEYRGHLAQATHELRLRLGEQLRRVPLDKLQ
RGRAGEMNALLLGSVDENLNYVIAIANILLLTIVTPLTASLATLWIDWRLGLVMLLIFPL
LVPFYYWRRPAMRRQMQTLGEAHQRLSGDIVEFAQGMMVLRTCGSDADKSRALLAHFNAL
ENLQTRTHRQGAGATMLIASVVELGLQVVVLSGIVWVVTGTLNLAFLIAAVAMIMRFAEP
MAMFISYTSVVELIASALQRIEQFMAIAPLPVAEQSEMPERYDIRFDNVSYRYEEGDGHA
LNHVSLTFPAASMSALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRRLTPEQLNSL
ISVVFQDVWLFDDTLLANIRIARPQATRQEVEEAARAAQCLEFISRLPQGWLTPMGEMGG
QLSGGERQRISIARALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRL
STIAGAGNILVMEEGQVVEQGTHAQLLSHHGRYQALWQAQMAARVWRDDGGSASGEWVHE
>gi|223713588|gb|ACDM01000010.1| GENE    37     56954  -     58234    967    426 aa, chain + ## HITS:1  COG:YPO1915 KEGG:ns NR:ns ## COG: YPO1915 COG0477 # Protein_GI_number: 16122163 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 1     426       1     426     426     665   99.0  0
MSDVQSNVKPLTLTTGRVIFAIAGVYVTQSLVSALSMQSLPALVRAAGGSLALAGATTLF
MLPWALKFIWAPWIERWRLPPGSQERRSRMLILRGQVALAAILTIAAAIGWFGREGGFPD
TQIVALFVLFMVAGTVASTIDIASDGFCVDQLTRTGYGWGNSVQVGGSYLGMMCGGGVFL
MLSAASGWPVAMLMMAVLIMALSLPLWRITEPTRTATIPHVPALGYALRRKQARLGLLLV
LMLNSGMRFVLPLLAPLLLDHGLSMSALGALFSGGNIAAGIAGTLAGGLLMKYTSPGRAL
LTAYGVQGIALLAVVMTLMMAPGHLLLQILQCLVIVQSISLACALVCLYATLMSLSSPLQ
AGVDFTLFQCTDAAIAILAGVIGGVVAQHFGYAACFLFAGAFTLLAAWVAYIRLHSAREL
MTSAID
>gi|223713588|gb|ACDM01000010.1| GENE    38     58262  -     59566   1173    434 aa, chain + ## HITS:1  COG:YPO1916 KEGG:ns NR:ns ## COG: YPO1916 COG0147 # Protein_GI_number: 16122164 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Yersinia pestis # 1     434       1     434     434     878  100.0  0
MKISEFLHLALPEEQWLPTISGVLRQFAEEECYVYERQPCWYLGKGCQARLHINADGTQA
TFIDDAGEQKWAVDSIADCARRFMAHPQVKGRRVYGQVGFNFAAHARGIAFNAGEWPLLT
LTVPREELIFEKGNVTVYADSADGCRRLCEWVKEAGTTTQNAPLAVDTALNGEAYKQQVA
RAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPE
LVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVC
QPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNA
IMQIEKTPRELYSGAILLLDDTRFDAALVLRSVFQDSQRCWIQAGAGIIAQSTPERELTE
TREKLASIAPYLMV
>gi|223713588|gb|ACDM01000010.1| GENE    39     59760  -     60986    371    408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1     394      13     397     397 147  28 5e-34
PSDKPFKVSDSHSLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIR
KMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVI
GNLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGV
TTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEID
FTNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGD
HNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQER
NTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
>gi|223713588|gb|ACDM01000010.1| GENE    40     61360  -     62157    315    265 aa, chain - ## HITS:1  COG:ECs2774 KEGG:ns NR:ns ## COG: ECs2774 COG3228 # Protein_GI_number: 15832028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     265      14     278     278     530   99.0  1e-151
MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAERFLQQKRLVPLQGFEL
NSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQ
SWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFIPLREVAGWEHDL
HAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQ
FYQQDPLQRLHHANDTDSFSATNVH
>gi|223713588|gb|ACDM01000010.1| GENE    41     62910  -     63440    263    176 aa, chain - ## HITS:1  COG:yodB KEGG:ns NR:ns ## COG: yodB COG3038 # Protein_GI_number: 16129920 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli K12 # 1     176      11     186     186     329  100.0  2e-90
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR
LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV
SPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
>gi|223713588|gb|ACDM01000010.1| GENE    42     63783  -     64454    446    223 aa, chain - ## HITS:1  COG:yodA KEGG:ns NR:ns ## COG: yodA COG3443 # Protein_GI_number: 16129919 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted protein # Organism: Escherichia coli K12 # 8     223       1     216     216     429   98.0  1e-120
MTLEETVLAIRLHKLAVALGVFMVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVQNR
KLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYATDIEMIGIEDG
IVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRK
SSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH
>gi|223713588|gb|ACDM01000010.1| GENE    43     64690  -     65325    460    211 aa, chain - ## HITS:1  COG:yedZ KEGG:ns NR:ns ## COG: yedZ COG2717 # Protein_GI_number: 16129918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     211       1     211     211     335   98.0  4e-92
MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLATLL
ITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYVLLELGVNNLALLGKELITRPYLTL
GIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYA
GLALLLLALRYKKLRSLFNRLRKQVHNKLSV
>gi|223713588|gb|ACDM01000010.1| GENE    44     65326  -     66273    854    315 aa, chain - ## HITS:1  COG:ECs2709 KEGG:ns NR:ns ## COG: ECs2709 COG2041 # Protein_GI_number: 15831963 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Escherichia coli O157:H7 # 1     315      20     334     334     634   99.0  0
MKRRQVLKALGISATALSLPHAAHADLLSWFKGNDRPPAPAGKALEFSKPAAWQNNLPLT
PADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEE
RIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGG
LKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLT
RERPPTTWNLAAPDEYGFYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAD
QVASLYRGLDLRENF
>gi|223713588|gb|ACDM01000010.1| GENE    45     66439  -     66852    292    137 aa, chain - ## HITS:1  COG:yedX KEGG:ns NR:ns ## COG: yedX COG2351 # Protein_GI_number: 16129916 # Func_class: R General function prediction only # Function: Transthyretin-like protein # Organism: Escherichia coli K12 # 1     137       1     137     137     270   99.0  5e-73
MLKRYLVLSVATAAFSLPSLVNAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQL
NTAKTDKDGRIKALWPEQTVTTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHY
HVPLLLSQYGYSTYRGS
>gi|223713588|gb|ACDM01000010.1| GENE    46     66937  -     67656    169    239 aa, chain + ## HITS:1  COG:ECs2707 KEGG:ns NR:ns ## COG: ECs2707 COG0745 # Protein_GI_number: 15831961 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     460   99.0  1e-129
MNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSF
SELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAG
EIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK
>gi|223713588|gb|ACDM01000010.1| GENE    47     68112  -     69014    290    300 aa, chain + ## HITS:1  COG:yedV KEGG:ns NR:ns ## COG: yedV COG0642 # Protein_GI_number: 16129914 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     300     153     452     452     573   99.0  1e-163
MLEQYKINSIIICIVAIILCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALP
RELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQ
KTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEI
CFNVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTK
INEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN
>gi|223713588|gb|ACDM01000010.1| GENE    48     69112  -     69963    774    283 aa, chain - ## HITS:1  COG:yedU KEGG:ns NR:ns ## COG: yedU COG0693 # Protein_GI_number: 16129913 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli K12 # 1     283       1     283     283     577  100.0  1e-165
MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERY
LPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFF
EQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRF
VISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGM
NIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG
>gi|223713588|gb|ACDM01000010.1| GENE    49     70556  -     71671   1250    371 aa, chain - ## HITS:1  COG:ompF KEGG:ns NR:ns ## COG: ompF COG3203 # Protein_GI_number: 16128896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     371       2     362     362     343   56.0  2e-94
MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDTSYA
RFGVKGETQITSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELGSFDYGRNYGV
AYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNYDFFGLVDGLDFAIQYQGKNSN
RSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWSLAAKYDANNV
YAAVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFDFGLRPSLGYV
YSKGKDIKGVPGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKDDAAITGAAAD
DQFAVGIVYQF
>gi|223713588|gb|ACDM01000010.1| GENE    50     72322  -     72603    322     93 aa, chain + ## HITS:1  COG:no KEGG:SSON_2020 NR:ns ## KEGG: SSON_2020 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      93      35     127     127     166   97.0  2e-40
MEERLSRSPSGKLALWAFYTWCGYFVWAMARYIWVMSRIPDALVSGFESDLGSTAGKWLG
ALVGFLFMALVGALLGSIAWYTRPRPARSRRYE
>gi|223713588|gb|ACDM01000010.1| GENE    51     72643  -     73338    538    231 aa, chain + ## HITS:1  COG:yedJ KEGG:ns NR:ns ## COG: yedJ COG1418 # Protein_GI_number: 16129908 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Escherichia coli K12 # 1     231       1     231     231     419   97.0  1e-117
MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDI
VSLAKNYPQRQRSSILAAEETRRLLREEFVQFPAEKIEAVCHAIAAHSFSAQIAPLTTEA
KIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQYRPLDDKRYALDHFQTKLLK
LPQTMQTVRGKQLAQHNAQFLVEFMAKLSAELAGENEGVDHKVIDAFSPAG
>gi|223713588|gb|ACDM01000010.1| GENE    52     73405  -     74823   1312    472 aa, chain + ## HITS:1  COG:ECs2699 KEGG:ns NR:ns ## COG: ECs2699 COG0270 # Protein_GI_number: 15831953 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Escherichia coli O157:H7 # 1     472       1     472     472     956   99.0  0
MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENHWSAAILKRALANDSAW
HRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHA
VRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPF
SLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRI
IMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDIS
GCFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVT
RTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAK
FRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRCSR
>gi|223713588|gb|ACDM01000010.1| GENE    53     74804  -     75274    477    156 aa, chain + ## HITS:1  COG:vsr KEGG:ns NR:ns ## COG: vsr COG3727 # Protein_GI_number: 16129906 # Func_class: L Replication, recombination and repair # Function: DNA G:T-mismatch repair endonuclease # Organism: Escherichia coli K12 # 1     156       1     156     156     313   99.0  1e-85
MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCV
IFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR
GREKLTDEALSERLEEWICGEGASAQIDTQGIHLLA
>gi|223713588|gb|ACDM01000010.1| GENE    54     75263  -     76183    963    306 aa, chain - ## HITS:1  COG:ECs2697 KEGG:ns NR:ns ## COG: ECs2697 COG0697 # Protein_GI_number: 15831951 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1     306       1     306     306     448   99.0  1e-126
MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGH
KLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIK
TRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSHITLPVGMMA
GAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPA
LATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVI
QDASSE
>gi|223713588|gb|ACDM01000010.1| GENE    55     76362  -     77273   1153    303 aa, chain + ## HITS:1  COG:yedI KEGG:ns NR:ns ## COG: yedI COG2354 # Protein_GI_number: 16129904 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     303       3     305     305     503   99.0  1e-142
MAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWG
VAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPA
QSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIA
LVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKAFSIVGTLAMFL
VGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVAKMRG
QAH
>gi|223713588|gb|ACDM01000010.1| GENE    56     77352  -     77534    185     60 aa, chain + ## HITS:1  COG:ECs2695 KEGG:ns NR:ns ## COG: ECs2695 COG5475 # Protein_GI_number: 15831949 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli O157:H7 # 1      60       1      60      60     102  100.0  2e-22
MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV
>gi|223713588|gb|ACDM01000010.1| GENE    57     77723  -     78640    710    305 aa, chain + ## HITS:1  COG:no KEGG:JW5832 NR:ns ## KEGG: JW5832 # Name: yedQ # Def: predicted diguanylate cyclase # Organism: E.coli_J # Pathway: not_defined # 1     305       7     311     564     619   99.0  1e-176
MENQSWLKKLARRLGPGHIVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANA
LDKHLQYNVDKLIFLRNGMREALIAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPV
NGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVST
QPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDS
NNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRE
LALLA
>gi|223713588|gb|ACDM01000010.1| GENE    58     78644  -     79399    646    251 aa, chain + ## HITS:1  COG:yedQ_2 KEGG:ns NR:ns ## COG: yedQ_2 COG2199 # Protein_GI_number: 16129902 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 73     251       1     179     179     349   99.0  2e-96
MEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTML
LISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVI
QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEA
AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLADRRLYLAKQA
GRNRVFASDNA
>gi|223713588|gb|ACDM01000010.1| GENE    59     79396  -     80211    735    271 aa, chain - ## HITS:1  COG:yedP KEGG:ns NR:ns ## COG: yedP COG3769 # Protein_GI_number: 16129901 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1     271       1     271     271     538   99.0  1e-153
MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKT
LGLQGLPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEISQVLNTLREKEHFKFTTFDD
VDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNELGLQFMQGARFWH
VLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVH
LHDEDPARVWRTQREGPEGWREGLDHFFSAR
>gi|223713588|gb|ACDM01000010.1| GENE    60     80510  -     80737    292     75 aa, chain - ## HITS:1  COG:no KEGG:G2583_2404 NR:ns ## KEGG: G2583_2404 # Name: yodD # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      75       6      80      80     112  100.0  4e-24
MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA
FELDIHDFSVSEVNR
>gi|223713588|gb|ACDM01000010.1| GENE    61     80900  -     81088    324     62 aa, chain + ## HITS:1  COG:no KEGG:LF82_0529 NR:ns ## KEGG: LF82_0529 # Name: dsrB # Def: protein DsrB # Organism: E.coli_LF82 # Pathway: not_defined # 1      62       1      62      62     124  100.0  1e-27
MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK
AE
>gi|223713588|gb|ACDM01000010.1| GENE    62     81132  -     81755    414    207 aa, chain - ## HITS:1  COG:ECs2690 KEGG:ns NR:ns ## COG: ECs2690 COG2771 # Protein_GI_number: 15831944 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     207       1     207     207     379   99.0  1e-105
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIH
DASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLLISSKSIKPESLDDILGDI
LKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIKRKI
KTHNKQVIYHVVRLTDNVTNGIFVNMR
>gi|223713588|gb|ACDM01000010.1| GENE    63     82045  -     82830    760    261 aa, chain - ## HITS:1  COG:fliR KEGG:ns NR:ns ## COG: fliR COG1684 # Protein_GI_number: 16129897 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Escherichia coli K12 # 1     261       1     261     261     365   98.0  1e-101
MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA
NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL
NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF
LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC
EHLFSEIFNLLADIISELPLI
>gi|223713588|gb|ACDM01000010.1| GENE    64     82839  -     83108    432     89 aa, chain - ## HITS:1  COG:STM1980 KEGG:ns NR:ns ## COG: STM1980 COG1987 # Protein_GI_number: 16765318 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Salmonella typhimurium LT2 # 1      89       1      89      89      98   95.0  3e-21
MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI
AIIIAGPWMLNLLLDYVRTLFTNLPYIIG
>gi|223713588|gb|ACDM01000010.1| GENE    65     83118  -     83855    706    245 aa, chain - ## HITS:1  COG:ECs2687 KEGG:ns NR:ns ## COG: ECs2687 COG1338 # Protein_GI_number: 15831941 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Escherichia coli O157:H7 # 1     245       1     245     245     392  100.0  1e-109
MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM
MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK
ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK
TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
QSFYS
>gi|223713588|gb|ACDM01000010.1| GENE    66     83855  -     84220    262    121 aa, chain - ## HITS:1  COG:STM1978 KEGG:ns NR:ns ## COG: STM1978 COG3190 # Protein_GI_number: 16765316 # Func_class: N Cell motility # Function: Flagellar biogenesis protein # Organism: Salmonella typhimurium LT2 # 1     121       2     125     125     135   66.0  3e-32
MNNHATVQSSAPVSAAPLLQVSGALITIIALILAAAWLIKRLGFAPKRTGVNGLKISASA
SLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEIPQTDFQSVMKNLLKRSGR
S
>gi|223713588|gb|ACDM01000010.1| GENE    67     84223  -     84636    543    137 aa, chain - ## HITS:1  COG:ECs2685 KEGG:ns NR:ns ## COG: ECs2685 COG1886 # Protein_GI_number: 15831939 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Escherichia coli O157:H7 # 1     137       1     137     137     245  100.0  1e-65
MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDI
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
RITDIITPSERMRRLSR
>gi|223713588|gb|ACDM01000010.1| GENE    68     84633  -     85637   1052    334 aa, chain - ## HITS:1  COG:ECs2684 KEGG:ns NR:ns ## COG: ECs2684 COG1868 # Protein_GI_number: 15831938 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Escherichia coli O157:H7 # 1     334       1     334     334     649  100.0  0
MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER
FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP
SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV
RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR
NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP
VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
>gi|223713588|gb|ACDM01000010.1| GENE    69     85642  -     86106    514    154 aa, chain - ## HITS:1  COG:ECs2683 KEGG:ns NR:ns ## COG: ECs2683 COG1580 # Protein_GI_number: 15831937 # Func_class: N Cell motility # Function: Flagellar basal body-associated protein # Organism: Escherichia coli O157:H7 # 1     154       1     154     154     289  100.0  2e-78
MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALD
TFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKK
NLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR
>gi|223713588|gb|ACDM01000010.1| GENE    70     86211  -     87338    790    375 aa, chain - ## HITS:1  COG:fliK KEGG:ns NR:ns ## COG: fliK COG3144 # Protein_GI_number: 16129890 # Func_class: N Cell motility # Function: Flagellar hook-length control protein # Organism: Escherichia coli K12 # 1     375       1     375     375     519   96.0  1e-147
MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK
GEPLVSEILADAQQADLLIPVDETPPVINDEQSTSTPLTTAQTMTLAAVAGNNTAKDEKA
DDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKPTLFTKLTSAQLTTAQPDDAP
GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW
QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA
LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS
LQVRVTGNSGVDIFA
>gi|223713588|gb|ACDM01000010.1| GENE    71     87335  -     87778    506    147 aa, chain - ## HITS:1  COG:fliJ KEGG:ns NR:ns ## COG: fliJ COG2882 # Protein_GI_number: 16129889 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis chaperone # Organism: Escherichia coli K12 # 1     147       1     147     147     206   99.0  2e-53
MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG
MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST
AALLAENRLDQKKMDEFAQRAAMRKPE
>gi|223713588|gb|ACDM01000010.1| GENE    72     87797  -     89170   1527    457 aa, chain - ## HITS:1  COG:ZfliI KEGG:ns NR:ns ## COG: ZfliI COG1157 # Protein_GI_number: 15802376 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Escherichia coli O157:H7 EDL933 # 13     457      52     496     496     826  100.0  0
MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGS
ETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRV
LDGSGKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGL
FAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPAD
VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPS
VFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEA
GHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDK
AIALWPQLEGYLQQGIFERADWEASLQGLERIFPTVS
>gi|223713588|gb|ACDM01000010.1| GENE    73     89170  -     89856    822    228 aa, chain - ## HITS:1  COG:fliH KEGG:ns NR:ns ## COG: fliH COG1317 # Protein_GI_number: 16129887 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Escherichia coli K12 # 1     228       8     235     235     361   98.0  1e-100
MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI
AEGRQQGHEQGYQEGLARGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL
MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT
LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV
>gi|223713588|gb|ACDM01000010.1| GENE    74     89849  -     90844   1288    331 aa, chain - ## HITS:1  COG:ECs2678 KEGG:ns NR:ns ## COG: ECs2678 COG1536 # Protein_GI_number: 15831932 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Escherichia coli O157:H7 # 1     331       1     331     331     551  100.0  1e-157
MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE
QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD
LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN
GLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLV
DVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQ
VENEQKAILLIVRRLAETGEMVIGSGEDTYV
>gi|223713588|gb|ACDM01000010.1| GENE    75     90837  -     92495   1532    552 aa, chain - ## HITS:1  COG:fliF KEGG:ns NR:ns ## COG: fliF COG1766 # Protein_GI_number: 16129885 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Escherichia coli K12 # 1     552       1     552     552     962   99.0  0
MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG
GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGI
SQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPG
RALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEG
RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQ
SGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEV
DRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEALTREAMGFSEKRGD
SLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRA
EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREISDNDPRVVA
LVIRQWINNDHE
>gi|223713588|gb|ACDM01000010.1| GENE    76     92710  -     93024    427    104 aa, chain + ## HITS:1  COG:ECs2676 KEGG:ns NR:ns ## COG: ECs2676 COG1677 # Protein_GI_number: 15831930 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Escherichia coli O157:H7 # 1     104       1     104     104     143   99.0  8e-35
MSAIQGIEGVISQLQTTAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFT
LGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV
>gi|223713588|gb|ACDM01000010.1| GENE    77     93368  -     93700    321    110 aa, chain + ## HITS:1  COG:ECs1614 KEGG:ns NR:ns ## COG: ECs1614 COG2076 # Protein_GI_number: 15830868 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1     110       1     110     110     186   98.0  8e-48
MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAY
AIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSAPH
>gi|223713588|gb|ACDM01000010.1| GENE    78     93869  -     94420     93    183 aa, chain + ## HITS:1  COG:ybcL KEGG:ns NR:ns ## COG: ybcL COG1881 # Protein_GI_number: 16128528 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Escherichia coli K12 # 1     183       1     183     183     340   96.0  1e-93
MKKLIVSSVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGA
PEGTKSFAVTVYDPDAPTGSGWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDF
GYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVDSNSSGALVGYMLNANKIATAEITPVY
EIK
>gi|223713588|gb|ACDM01000010.1| GENE    79     94554  -     94802    113     82 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MFLVAPNNILTRGSEVSRNLSCYEFDQLSHKIFETFQLDQWDNKAFLQDKDLLLDNSQYK
IHIHREIILSDYYQQLDYASPN
>gi|223713588|gb|ACDM01000010.1| GENE    80     95384  -     95908    -57    174 aa, chain - ## HITS:1  COG:Z5815 KEGG:ns NR:ns ## COG: Z5815 COG1943 # Protein_GI_number: 15804795 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1     119       1     119     138     234   93.0  5e-62
MKKETDIRRGRHCVFLKHVHLVFVTKYRRQIFDHDATEKLRTYFSNVCADFEAERVEMDG
GPDHVHLLINYPPKLAISSLVNSLKGVSSRLLRRDRPDIAVRYYDKGVLWSPGYFVSSCI
LTYQLDLITTISAPNRISNVISIPLIIPSTSCNFPTLELHIVQTPDAKKSHVHF
>gi|223713588|gb|ACDM01000010.1| GENE    81     95991  -     96260     85     89 aa, chain + ## HITS:1  COG:ECs5183 KEGG:ns NR:ns ## COG: ECs5183 COG0675 # Protein_GI_number: 15834437 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      77       1      77     382     153   96.0  8e-38
MRRFAGACRFVFNRALALQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQ
QSLKDPERAYKNFFRLRHHAQTVCYLSRL
>gi|223713588|gb|ACDM01000010.1| GENE    82     96142  -     96639    308    165 aa, chain - ## HITS:1  COG:ECs2670 KEGG:ns NR:ns ## COG: ECs2670 COG2135 # Protein_GI_number: 15831924 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     142       1     142     222     292   97.0  2e-79
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVF
WGYAPGWWDKPPLINARVETAATSHMFKPLWQHGRAICFADGWFEWKKEGDKKQPYFIYR
ADGQAVFIAAIGSTPFERGDEAGRSFCKPAQGLSVTVAMAVRANL
>gi|223713588|gb|ACDM01000010.1| GENE    83     96748  -     96981    349     77 aa, chain - ## HITS:1  COG:ECs2669 KEGG:ns NR:ns ## COG: ECs2669 COG0425 # Protein_GI_number: 15831923 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1      77       1      77      77     145  100.0  2e-35
MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYT
VLDIQQDGPTIRYLIQK
>gi|223713588|gb|ACDM01000010.1| GENE    84     96978  -     98183   1462    401 aa, chain - ## HITS:1  COG:yedE KEGG:ns NR:ns ## COG: yedE COG2391 # Protein_GI_number: 16129876 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli K12 # 1     401       1     401     401     706   99.0  0
MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHA
EEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGI
IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKV
SAASPLTQKPDQARRRFRLGMLVFFGLLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQI
CFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGF
GIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKT
FGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA
>gi|223713588|gb|ACDM01000010.1| GENE    85     98370  -     98783    519    137 aa, chain + ## HITS:1  COG:no KEGG:SDY_1087 NR:ns ## KEGG: SDY_1087 # Name: yedD # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1     137       1     137     137     265  100.0  4e-70
MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK
EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT
AECAAALDKAPLPTPLP
>gi|223713588|gb|ACDM01000010.1| GENE    86     98817  -    100304   1510    495 aa, chain - ## HITS:1  COG:amyA KEGG:ns NR:ns ## COG: amyA COG0366 # Protein_GI_number: 16129874 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1     495       1     495     495    1033   99.0  0
MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYD
LFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRV
NADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVND
YTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHI
PAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEAS
RMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLREN
GVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCI
AFSRSGTDEYPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQESVVTDENGEATFF
CNGGSVSVWVIEEVI
>gi|223713588|gb|ACDM01000010.1| GENE    87    100382  -    100747    474    121 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_1129 NR:ns ## KEGG: ECIAI39_1129 # Name: fliT # Def: flagellar biosynthesis protein FliT # Organism: E.coli_IAI39 # Pathway: Flagellar assembly [PATH:ect02040] # 1     121       1     121     121     204  100.0  6e-52
MNNAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAVQEIAHLTEEVAPSTTM
QEQLRPMLRLILDNESKVKQLLQIRMDELAKLVGQSSVQKSVLSAYGDQGGFVLAPQDNL
F
>gi|223713588|gb|ACDM01000010.1| GENE    88    100747  -    101157    437    136 aa, chain - ## HITS:1  COG:ECs2664 KEGG:ns NR:ns ## COG: ECs2664 COG1516 # Protein_GI_number: 15831918 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Escherichia coli O157:H7 # 1     136       1     136     136     219   95.0  1e-57
MYTASGSKAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARLFMQDNNQQGKGVSLSK
AINIIENGLRVSLDEDSKDELTQNLIALYSYMVRRLLQANLRNDVSAVEEVEALMRNIAD
AWKESLLSPSLIQDPV
>gi|223713588|gb|ACDM01000010.1| GENE    89    101172  -    102584   1437    470 aa, chain - ## HITS:1  COG:STM1960 KEGG:ns NR:ns ## COG: STM1960 COG1345 # Protein_GI_number: 16765298 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Salmonella typhimurium LT2 # 1     470       1     467     467     521   75.0  1e-147
MASFTSLGVGSNLPLDTLLNNLTIAEKKRLNPITQQQSDNTARLTAYGTLKSALEKFQTA
NTALNKADLFKSTTVTSSNEDLKVSTEAGAAPGIYTISVTQLAQAQSLRTDSPTIIASTK
DALGDESSDTRTIKITQDGRKEPLEIKLNKDQTSLGEISKAINDADSGISASIVKVKDGD
YQLVLTASEGLANKMTISVEGDSKLNDLLAYDSKTNTGNMKELVNAQNAQLNVNGIDIER
SSNKITDAPQGVTLDLTKKVTDVRVTVTKSNDKATEAIKGWVDSYNSLIDTFNTLTKYKE
VDPGAEAQDKNNGALLGDSVVRTIQSGIRAQFANGASDGAFKTLNEIGIKQDGTTGKLKI
DDDKLKKVLNENTASVRELLVGDGKETGITTKITTEVKGYLADDGIIDSAQDSINATLKK
LTKQYLSVSASIDDTVARYTAQFTQLDTMMSKLNNTSTYLSQQFTAMSNS
>gi|223713588|gb|ACDM01000010.1| GENE    90    102839  -    104332   1545    497 aa, chain + ## HITS:1  COG:STM2771 KEGG:ns NR:ns ## COG: STM2771 COG1344 # Protein_GI_number: 16766083 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Salmonella typhimurium LT2 # 1     497       1     506     506     386   60.0  1e-107
MAQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSSLRINSAKDDAAGQAIANRFTANIKG
LTQASRNANDGISVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRL
SEIDRVSGQTQFNGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTK
LKAATAETTYFGSTVKLADANTLDADITATVKGTTTPGKRDGNIMSDANGKLYVKVAGSD
KSPENGYYEVTVEDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTA
TASITGAKLFKLEDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHD
NVKVELGGSDGKTEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQ
VDSLRSNLGAIQNRFDSAITNLGNTVNNLSSARSRIEDADYATEVSNMSRAQILQQAGTS
VLAQANQTTQNVLSLLR
>gi|223713588|gb|ACDM01000010.1| GENE    91    104498  -    105217    825    239 aa, chain + ## HITS:1  COG:ECs2661 KEGG:ns NR:ns ## COG: ECs2661 COG1191 # Protein_GI_number: 15831915 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     416  100.0  1e-116
MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ
RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
>gi|223713588|gb|ACDM01000010.1| GENE    92    105266  -    105814    255    182 aa, chain + ## HITS:1  COG:no KEGG:APECO1_962 NR:ns ## KEGG: APECO1_962 # Name: fliZ # Def: flagella biosynthesis protein FliZ # Organism: E.coli_APEC # Pathway: not_defined # 1     182      14     195     195     361   97.0  5e-99
MVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGW
QVEQQSWAALCRFCGDLHCKTQSNFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHL
HEQNISLAQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTGLVQKSSSQPASD
IY
>gi|223713588|gb|ACDM01000010.1| GENE    93    105902  -    106702   1298    266 aa, chain + ## HITS:1  COG:fliY KEGG:ns NR:ns ## COG: fliY COG0834 # Protein_GI_number: 16129867 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1     266       1     266     266     490  100.0  1e-138
MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGDD
GKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDF
STPYTISGIQALVKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDP
TKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVN
DAIAEMQKDGTLQALSEKWFGADVTK
>gi|223713588|gb|ACDM01000010.1| GENE    94    106807  -    107793   1195    328 aa, chain + ## HITS:1  COG:yedO KEGG:ns NR:ns ## COG: yedO COG2515 # Protein_GI_number: 16129866 # Func_class: E Amino acid transport and metabolism # Function: 1-aminocyclopropane-1-carboxylate deaminase # Organism: Escherichia coli K12 # 1     328      33     360     360     647   99.0  0
MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAA
DALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLD
LFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGGSNALGALGYVESALEIAQQC
EGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGVTVSRSVADQLPKVVNLQQAIAK
ELELTASAEIILWDDYFAPGYGVPNDEGMEAVKLLARLEGILLDPVYTGKAMAGLIDGIS
QKRFKDEGPILFIHTGGAPALFAYHPHV
>gi|223713588|gb|ACDM01000010.1| GENE    95    107808  -    108476    721    222 aa, chain + ## HITS:1  COG:yecS KEGG:ns NR:ns ## COG: yecS COG0765 # Protein_GI_number: 16129865 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1     222       1     222     222     396  100.0  1e-110
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYIS
IFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWE
AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
RTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK
>gi|223713588|gb|ACDM01000010.1| GENE    96    108473  -    109225    660    250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4     246       2     241     245 258  51 2e-67
MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTI
TVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE
ATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV
GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGAAKALFADPQQPRT
RQFLEKFLLQ
>gi|223713588|gb|ACDM01000010.1| GENE    97    109491  -    110177    430    228 aa, chain + ## HITS:1  COG:ECs2654 KEGG:ns NR:ns ## COG: ECs2654 COG2771 # Protein_GI_number: 15831908 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     228      13     240     240     450   99.0  1e-126
MLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQ
AKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGF
LSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTA
EGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
>gi|223713588|gb|ACDM01000010.1| GENE    98    110245  -    110469    382     74 aa, chain - ## HITS:1  COG:no KEGG:ECDH10B_2056 NR:ns ## KEGG: ECDH10B_2056 # Name: yecF # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1      74       1      74      74     103  100.0  1e-21
MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAV
FSKTVKQIKQAYRQ
>gi|223713588|gb|ACDM01000010.1| GENE    99    110928  -    111584    539    218 aa, chain + ## HITS:1  COG:uvrY KEGG:ns NR:ns ## COG: uvrY COG2197 # Protein_GI_number: 16129861 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli K12 # 1     218       1     218     218     416  100.0  1e-116
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI
GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS
GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT
VNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
>gi|223713588|gb|ACDM01000010.1| GENE   100    111647  -    113413   1642    588 aa, chain + ## HITS:1  COG:ECs2651 KEGG:ns NR:ns ## COG: ECs2651 COG0322 # Protein_GI_number: 15831905 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Escherichia coli O157:H7 # 1     588       1     588     588    1193  100.0  0
MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH
NYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETL
ALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGK
DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAG
MACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFN
LSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA
LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAM
NQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR
KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE
GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH
>gi|223713588|gb|ACDM01000010.1| GENE   101    113470  -    114018    264    182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 9     175     486     665     904 106  38 1e-21
MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST
RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS
VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL
DQ
>gi|223713588|gb|ACDM01000010.1| GENE   102    114668  -    115333    756    221 aa, chain + ## HITS:1  COG:yecA KEGG:ns NR:ns ## COG: yecA COG3318 # Protein_GI_number: 16129858 # Func_class: R General function prediction only # Function: Predicted metal-binding protein related to the C-terminal domain of SecA # Organism: Escherichia coli K12 # 1     221       1     221     221     437  100.0  1e-122
MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPEQWLVAVWGGA
DYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFG
YMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAALDLHA
YWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCCLH
>gi|223713588|gb|ACDM01000010.1| GENE   103    115395  -    116573   1198    392 aa, chain - ## HITS:1  COG:ECs2615 KEGG:ns NR:ns ## COG: ECs2615 COG0814 # Protein_GI_number: 15831869 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1     392      12     403     403     643   99.0  0
MAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLA
KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATAGVLLFTFVA
GGVVCVGTSLVDLFNRFLFSAKIIFLVVMLVLLLPHIHKVNLLTLPLQQGLALSAIPVIF
TSFGFHGSVPSIVSYMDGNVRKLRWVFITGSAIPLVAYIFWQVATLGSIDSTTFMGLLAN
HAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRSNTVGGR
LQTGAITFLPPLAFALFYPRGFVMALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVK
GGRPALVVVFLCGIAVIGVQFLIAAGLLPEVG
>gi|223713588|gb|ACDM01000010.1| GENE   104    116797  -    117036    321     79 aa, chain + ## HITS:1  COG:no KEGG:SSON_1212 NR:ns ## KEGG: SSON_1212 # Name: yecH # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      79       1      79      79     144  100.0  1e-33
MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSAEGMTAGELVAFLAAKG
KFIPSKDGFSTDQSKICRH
>gi|223713588|gb|ACDM01000010.1| GENE   105    117074  -    117571    667    165 aa, chain - ## HITS:1  COG:ECs2613 KEGG:ns NR:ns ## COG: ECs2613 COG1528 # Protein_GI_number: 15831867 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Escherichia coli O157:H7 # 1     165       1     165     165     291  100.0  3e-79
MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDY
LTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFL
QWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELSTLDTQN
>gi|223713588|gb|ACDM01000010.1| GENE   106    118529  -    118780    284     83 aa, chain + ## HITS:1  COG:no KEGG:B21_01860 NR:ns ## KEGG: B21_01860 # Name: yecJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      83       1      83      83     138  100.0  5e-32
MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQLKNIDFTNHPAAADPV
TMRAIQKAIALIELKFTPQGESH
>gi|223713588|gb|ACDM01000010.1| GENE   107    118859  -    119362    483    167 aa, chain - ## HITS:1  COG:ECs2610 KEGG:ns NR:ns ## COG: ECs2610 COG1528 # Protein_GI_number: 15831864 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Escherichia coli O157:H7 # 1     167       1     167     167     296  100.0  1e-80
MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNF
MKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFL
RDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH
>gi|223713588|gb|ACDM01000010.1| GENE   108    120159  -    121148   1233    329 aa, chain + ## HITS:1  COG:araF KEGG:ns NR:ns ## COG: araF COG1879 # Protein_GI_number: 16129851 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     329       1     329     329     634  100.0  0
MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK
IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG
KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD
ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE
GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP
PKFTEVTDVVLITRDNFKEELEKKGLGGK
>gi|223713588|gb|ACDM01000010.1| GENE   109    121218  -    122732    183    504 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 275     477      20     217     245 75  25 3e-12
MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPT
TGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLL
NYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREID
NLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAM
VGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELMK
GLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISAR
RKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKV
ILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEIAGE
LLHEQADERQALSLAMPKVSQAVA
>gi|223713588|gb|ACDM01000010.1| GENE   110    122747  -    123733   1141    328 aa, chain + ## HITS:1  COG:araH KEGG:ns NR:ns ## COG: araH COG1172 # Protein_GI_number: 16132221 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1     328       2     329     329     519   99.0  1e-147
MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISM
SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVN
GFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLT
VACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA
SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISP
FAQYVVRGLILLAAVIFDRYKQKAKRTV
>gi|223713588|gb|ACDM01000010.1| GENE   111    123900  -    124700    698    266 aa, chain + ## HITS:1  COG:otsB KEGG:ns NR:ns ## COG: otsB COG1877 # Protein_GI_number: 16129849 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphatase # Organism: Escherichia coli K12 # 1     266       1     266     266     528   99.0  1e-150
MTEPLTEAPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATASDGALALIS
GRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTVIAQYPGA
ELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQQGKCVVEIKPRGTSKGEAIA
AFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVKIGTGATQASWRLAGVPDVWSWL
EMITTALQQKRENNRSDDYESFSRSI
>gi|223713588|gb|ACDM01000010.1| GENE   112    124675  -    126099   1260    474 aa, chain + ## HITS:1  COG:otsA KEGG:ns NR:ns ## COG: otsA COG0380 # Protein_GI_number: 16129848 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphate synthase # Organism: Escherichia coli K12 # 1     474       1     474     474     959  100.0  0
MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGN
ITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPL
LQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDY
DLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGP
LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS
RGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL
RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMS
LAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQRDKVATFPKLA
>gi|223713588|gb|ACDM01000010.1| GENE   113    126106  -    126534    396    142 aa, chain - ## HITS:1  COG:ECs2603 KEGG:ns NR:ns ## COG: ECs2603 COG0589 # Protein_GI_number: 15831857 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1     142       1     142     142     270   98.0  7e-73
MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPEMYNQLAAPMLEDLRSV
MQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHHFDLVICGNHNHSFFSRAS
CSAKRVIASSEVDVLLVPLTGD
>gi|223713588|gb|ACDM01000010.1| GENE   114    127314  -    127664    272    116 aa, chain + ## HITS:1  COG:no KEGG:EC55989_2071 NR:ns ## KEGG: EC55989_2071 # Name: flhD # Def: transcriptional activator FlhD # Organism: E.coli_55989 # Pathway: Two-component system [PATH:eck02020]; Flagellar assembly [PATH:eck02040] # 1     116       4     119     119     196  100.0  3e-49
MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET
NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA
>gi|223713588|gb|ACDM01000010.1| GENE   115    127667  -    128245    412    192 aa, chain + ## HITS:1  COG:no KEGG:ECSP_2465 NR:ns ## KEGG: ECSP_2465 # Name: flhC # Def: transcriptional activator FlhC # Organism: E.coli_O157_TW14359 # Pathway: Two-component system [PATH:etw02020]; Flagellar assembly [PATH:etw02040] # 1     192       1     192     192     385  100.0  1e-106
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA
WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII
PQLLDEQRVQAV
>gi|223713588|gb|ACDM01000010.1| GENE   116    128372  -    129259   1021    295 aa, chain + ## HITS:1  COG:ECs2600 KEGG:ns NR:ns ## COG: ECs2600 COG1291 # Protein_GI_number: 15831854 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Escherichia coli O157:H7 # 1     295       1     295     295     546   99.0  1e-155
MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKA
LPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADS
VMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAA
VMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLASVLRQKSAETSKMMQC
VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVKNPQQQTTTEEA
>gi|223713588|gb|ACDM01000010.1| GENE   117    129256  -    130182    653    308 aa, chain + ## HITS:1  COG:ECs2599 KEGG:ns NR:ns ## COG: ECs2599 COG1360 # Protein_GI_number: 15831853 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Escherichia coli O157:H7 # 1     308       1     308     308     586   99.0  1e-167
MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE
YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLWKLRG
DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA
PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG
MAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVP
TMPSAEPR
>gi|223713588|gb|ACDM01000010.1| GENE   118    130193  -    132151   1642    652 aa, chain + ## HITS:1  COG:cheA KEGG:ns NR:ns ## COG: cheA COG0643 # Protein_GI_number: 16129840 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Escherichia coli K12 # 1     652       3     654     654    1196   99.0  0
MDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFSVL
QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYICQA
LRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPRRIILSRLKAGEVDLLEEELGHL
TTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAA
EQAPTGRVEREKTTRSSESTSIRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNHGD
LITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLVGSSTEL
DKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDG
AGLNRERILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNI
QEMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADL
HPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQ
HQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSALQAINREQRMANTAA
>gi|223713588|gb|ACDM01000010.1| GENE   119    132172  -    132675    594    167 aa, chain + ## HITS:1  COG:ECs2597 KEGG:ns NR:ns ## COG: ECs2597 COG0835 # Protein_GI_number: 15831851 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Escherichia coli O157:H7 # 1     167       1     167     167     293  100.0  1e-79
MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTN
LRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAP
EFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA
>gi|223713588|gb|ACDM01000010.1| GENE   120    132820  -    134481   1461    553 aa, chain + ## HITS:1  COG:tar KEGG:ns NR:ns ## COG: tar COG0840 # Protein_GI_number: 16129838 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1     553       1     553     553     897  100.0  0
MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLM
LQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAATHYKKFKSMAPLPEMVATS
RNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGEAFAQYALSSEKLYRDIV
TDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLT
IDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASAL
EETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIA
DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIE
DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDR
VTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPLTNKPQTPSRPASEQPPAQPR
LRIAEQDPNWETF
>gi|223713588|gb|ACDM01000010.1| GENE   121    134527  -    136128   1539    533 aa, chain + ## HITS:1  COG:tap KEGG:ns NR:ns ## COG: tap COG0840 # Protein_GI_number: 16129837 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1     533       1     533     533     839  100.0  0
MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVEQSNQQRAALAQTRAVM
LQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRGLQKE
TEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQ
SQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVY
GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ
TAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDI
ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEES
VNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGIEQVAQAVSQMDQVT
QQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESVQLQIAPVVS
>gi|223713588|gb|ACDM01000010.1| GENE   122    136147  -    137007    613    286 aa, chain + ## HITS:1  COG:cheR KEGG:ns NR:ns ## COG: cheR COG1352 # Protein_GI_number: 16129836 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Escherichia coli K12 # 1     286       1     286     286     572  100.0  1e-163
MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS
LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYRVW
SAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQ
LQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTT
QQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD
>gi|223713588|gb|ACDM01000010.1| GENE   123    137010  -    138059    892    349 aa, chain + ## HITS:1  COG:cheB KEGG:ns NR:ns ## COG: cheB COG2201 # Protein_GI_number: 16129835 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Escherichia coli K12 # 1     349       1     349     349     657   99.0  0
MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMP
RMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYN
EMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLPL
SSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHMELARSG
ANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAMRQAGAW
TLAQNEASCVVFGMPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI
>gi|223713588|gb|ACDM01000010.1| GENE   124    138074  -    138463    499    129 aa, chain + ## HITS:1  COG:ECs2592 KEGG:ns NR:ns ## COG: ECs2592 COG0784 # Protein_GI_number: 15831846 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Escherichia coli O157:H7 # 1     129       1     129     129     234  100.0  4e-62
MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM
PNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL
NKIFEKLGM
>gi|223713588|gb|ACDM01000010.1| GENE   125    138474  -    139118    802    214 aa, chain + ## HITS:1  COG:cheZ KEGG:ns NR:ns ## COG: cheZ COG3143 # Protein_GI_number: 16129833 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein # Organism: Escherichia coli K12 # 1     214       1     214     214     345  100.0  3e-95
MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQ
MTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLAD
VPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKR
ENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF
>gi|223713588|gb|ACDM01000010.1| GENE   126    139320  -    140468   1064    382 aa, chain + ## HITS:1  COG:flhB KEGG:ns NR:ns ## COG: flhB COG1377 # Protein_GI_number: 16129832 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli K12 # 1     382       1     382     382     693   99.0  0
MSDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGML
SAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL
QPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT
AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK
GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI
REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRP
VQPTHLPVPEALDFINEKPTHE
>gi|223713588|gb|ACDM01000010.1| GENE   127    140461  -    142539   2089    692 aa, chain + ## HITS:1  COG:flhA KEGG:ns NR:ns ## COG: flhA COG1298 # Protein_GI_number: 16129831 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli K12 # 1     692       1     692     692    1265   99.0  0
MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL
VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG
GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE
AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE
SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG
LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE
DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRI
LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYT
VVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKV
LQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPSKDEVHVI
GLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR
FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK
>gi|223713588|gb|ACDM01000010.1| GENE   128    142539  -    142931    142    130 aa, chain + ## HITS:1  COG:no KEGG:B21_01838 NR:ns ## KEGG: B21_01838 # Name: flhE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     130       1     130     130     218  100.0  4e-56
MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLSTRQPASGLMTLVAWRY
QLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPLRFIWEVPGGGRLIPPLKV
QRNEVIVNYR
>gi|223713588|gb|ACDM01000010.1| GENE   129    143051  -    143539    212    162 aa, chain - ## HITS:1  COG:yecT KEGG:ns NR:ns ## COG: yecT COG3755 # Protein_GI_number: 16129829 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     162       8     169     169     311   99.0  4e-85
MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDTDVNVIKSCLRQEYNLV
DAQLNKAYGEAYRYIEQVPRTGVKKPDTEQLNLLKKSQRAWLDFRDKECELILSNEDVQD
LSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLTRG
>gi|223713588|gb|ACDM01000010.1| GENE   130    143716  -    145449   2224    577 aa, chain - ## HITS:1  COG:argS KEGG:ns NR:ns ## COG: argS COG0018 # Protein_GI_number: 16129828 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     577       1     577     577    1151  100.0  0
MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAE
QVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASDRLGVATPEKQTIVVDYS
APNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQEN
AGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQ
ITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPM
GVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYVPE
SVPLEHHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDMPADELEKL
ANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQ
LAAAPVIIREDREAQLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYEHCPIL
SAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM
>gi|223713588|gb|ACDM01000010.1| GENE   131    145665  -    146231    402    188 aa, chain + ## HITS:1  COG:yecM KEGG:ns NR:ns ## COG: yecM COG3102 # Protein_GI_number: 16129827 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     188       3     190     190     373  100.0  1e-104
MANWQSIDELQDIASDLPRFIHALDELSRRLGLNITPLTADHISLRCHQNATAERWRRGF
EQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPGEKRYPHEGWEHIEIVLPG
DPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNPTLAVTDGKTTIKFHPWSIEE
IVASEQSA
>gi|223713588|gb|ACDM01000010.1| GENE   132    146245  -    146991    393    248 aa, chain + ## HITS:1  COG:cutCm KEGG:ns NR:ns ## COG: cutCm COG3142 # Protein_GI_number: 16132223 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Escherichia coli K12 # 1     248       1     248     248     495   99.0  1e-140
MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP
RGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF
HRAFDMCANPLHTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVR
AENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSSDEHADEYSRYIVDGAAVAEMKG
IIERHQAK
>gi|223713588|gb|ACDM01000010.1| GENE   133    147379  -    148479    643    366 aa, chain + ## HITS:1  COG:ECs2583 KEGG:ns NR:ns ## COG: ECs2583 COG3005 # Protein_GI_number: 15831837 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 1     366       1     366     366     721   98.0  0
MRGKKRIGLLFLLIAVVVGGGGLLLAQKALHKTSDTAFCLSCHSMSKPFEEYQGTVHFSN
QKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDSDDKFEAHRQEMAETVWKE
LKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKDSETCIDCHKGIAHFPPEIKMDDN
AAHELESQAATSVTNGAHIYPFKTSHIGELATVNPGTDLTVVDASGKQPIVLLQGYQMQG
SENTLYLAAGQRLALATLSEEGIKALTVNGEWQADEYGNQWRQASLQGALTDPALADRKP
LWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIAKGMGARTSMSENELDILTRYFQYNAK
DITEKQ
>gi|223713588|gb|ACDM01000010.1| GENE   134    148504  -    149301    927    265 aa, chain + ## HITS:1  COG:bisZ KEGG:ns NR:ns ## COG: bisZ COG0243 # Protein_GI_number: 16129825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     265       7     271     815     529  100.0  1e-150
MTLTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRWGAMNVEVKDGKIVSST
GALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALK
LIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAA
QVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLK
KSGKPVIAIDPIRSETIEFFDDNAT
>gi|223713588|gb|ACDM01000010.1| GENE   135    149314  -    150933   1702    539 aa, chain + ## HITS:1  COG:bisZ KEGG:ns NR:ns ## COG: bisZ COG0243 # Protein_GI_number: 16129825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     539     277     815     815    1104   99.0  0
MGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWAAEITGV
PEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYH
YSNGGNPTRVGGVLPEMSAAIAGHASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQ
TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFE
RNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWL
KFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYGDFRADPVKNALGTP
SGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLHSQLNYAEL
RKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKGVVCVHEGA
WPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPKLTAFDQPAVQA
>gi|223713588|gb|ACDM01000010.1| GENE   136    151098  -    152069   1059    323 aa, chain - ## HITS:1  COG:yecP KEGG:ns NR:ns ## COG: yecP COG0500 # Protein_GI_number: 16129824 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     323       1     323     323     671  100.0  0
MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSNAVEFLPEIKPYRLDLL
HSVTAESEEPLSAGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSD
LTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLG
IEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPG
DRYAQMRNVYFIPSALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLADFLDP
HDPGKTVEGYPAPKRAVLIARKP
>gi|223713588|gb|ACDM01000010.1| GENE   137    152066  -    152809    772    247 aa, chain - ## HITS:1  COG:yecO KEGG:ns NR:ns ## COG: yecO COG0500 # Protein_GI_number: 16129823 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     247       1     247     247     513  100.0  1e-146
MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQV
YDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD
IAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNM
HHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHNAGFEHSELWFQCFNFGSLVA
LKAEDAA
>gi|223713588|gb|ACDM01000010.1| GENE   138    152850  -    153245    490    131 aa, chain - ## HITS:1  COG:ECs2579 KEGG:ns NR:ns ## COG: ECs2579 COG3788 # Protein_GI_number: 15831833 # Func_class: R General function prediction only # Function: Uncharacterized relative of glutathione S-transferase, MAPEG superfamily # Organism: Escherichia coli O157:H7 # 1     131      11     141     141     228  100.0  2e-60
MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVL
MLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLW
YMPWELVFSLR
>gi|223713588|gb|ACDM01000010.1| GENE   139    153298  -    154116    481    272 aa, chain - ## HITS:1  COG:yecE KEGG:ns NR:ns ## COG: yecE COG1801 # Protein_GI_number: 16129821 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     272       1     272     272     542  100.0  1e-154
MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRF
CFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDS
LPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQR
KKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQ
APELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
>gi|223713588|gb|ACDM01000010.1| GENE   140    154113  -    154679    539    188 aa, chain - ## HITS:1  COG:ECs2577 KEGG:ns NR:ns ## COG: ECs2577 COG1335 # Protein_GI_number: 15831831 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli O157:H7 # 1     188      12     199     199     376  100.0  1e-104
MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSA
DYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRG
IDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRS
VEEILNAL
>gi|223713588|gb|ACDM01000010.1| GENE   141    154989  -    156761   2203    590 aa, chain + ## HITS:1  COG:aspS KEGG:ns NR:ns ## COG: aspS COG0173 # Protein_GI_number: 16129819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     590       1     590     590    1199  100.0  0
MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA
SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA
RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS
RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT
APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLK
SVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG
LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLT
DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING
YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM
LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN
>gi|223713588|gb|ACDM01000010.1| GENE   142    156822  -    157331    324    169 aa, chain + ## HITS:1  COG:ECs2575 KEGG:ns NR:ns ## COG: ECs2575 COG0494 # Protein_GI_number: 15831829 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 20     169       1     150     150     292   99.0  2e-79
MSIDNYVNGMSEGSQRRGSVKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTG
SVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTES
WFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA
>gi|223713588|gb|ACDM01000010.1| GENE   143    157360  -    158100   1067    246 aa, chain + ## HITS:1  COG:ECs2574 KEGG:ns NR:ns ## COG: ECs2574 COG0217 # Protein_GI_number: 15831828 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     246       1     246     246     444   99.0  1e-125
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN
MTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC
GGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMG
KVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISD
EVAATL
>gi|223713588|gb|ACDM01000010.1| GENE   144    158135  -    158656    581    173 aa, chain + ## HITS:1  COG:ECs2573 KEGG:ns NR:ns ## COG: ECs2573 COG0817 # Protein_GI_number: 15831827 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Escherichia coli O157:H7 # 1     173       1     173     173     302  100.0  2e-82
MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ
PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS
QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR
>gi|223713588|gb|ACDM01000010.1| GENE   145    158658  -    159260    231    200 aa, chain - ## HITS:1  COG:no KEGG:JW5306 NR:ns ## KEGG: JW5306 # Name: yebB # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     200       1     200     200     419  100.0  1e-116
MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLST
ITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSK
FVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPG
LVLIHAEGVETPQPELTEAV
>gi|223713588|gb|ACDM01000010.1| GENE   146    159535  -    160146    632    203 aa, chain + ## HITS:1  COG:ECs2571 KEGG:ns NR:ns ## COG: ECs2571 COG0632 # Protein_GI_number: 15831825 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Escherichia coli O157:H7 # 1     203       1     203     203     379  100.0  1e-105
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL
YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT
AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM
VSKIARPDASSETLIREALRAAL
>gi|223713588|gb|ACDM01000010.1| GENE   147    160155  -    161165   1079    336 aa, chain + ## HITS:1  COG:ECs2570 KEGG:ns NR:ns ## COG: ECs2570 COG2255 # Protein_GI_number: 15831824 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Escherichia coli O157:H7 # 1     336       1     336     336     644  100.0  0
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI
FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP
VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR
LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV
LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP
>gi|223713588|gb|ACDM01000010.1| GENE   148    161312  -    162097    972    261 aa, chain - ## HITS:1  COG:znuB KEGG:ns NR:ns ## COG: znuB COG1108 # Protein_GI_number: 16129812 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Escherichia coli K12 # 1     261       1     261     261     395  100.0  1e-110
MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAV
IAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLL
AVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTI
GVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAVYDTPAG
PSVVLCAALLFILSMMKKQAS
>gi|223713588|gb|ACDM01000010.1| GENE   149    162094  -    162849    219    251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1     202       1     212     305 89  29 2e-16
MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGV
IKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQK
LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHD
LHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQG
RIVLRRGNDRS
>gi|223713588|gb|ACDM01000010.1| GENE   150    162874  -    163860    408    328 aa, chain + ## HITS:1  COG:ECs2567 KEGG:ns NR:ns ## COG: ECs2567 COG4531 # Protein_GI_number: 15831821 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Zn2+ transport system, periplasmic component/surface adhesin # Organism: Escherichia coli O157:H7 # 1     328       1     328     328     635   98.0  0
MKCYNITLLIFITIIGRIMLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAI
ADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQV
TIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKL
VELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPL
GHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLG
TNIKLGKTSYSEFLSQLANQYASCLKGD
>gi|223713588|gb|ACDM01000010.1| GENE   151    163939  -    165198   1358    419 aa, chain + ## HITS:1  COG:ECs2566 KEGG:ns NR:ns ## COG: ECs2566 COG0739 # Protein_GI_number: 15831820 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli O157:H7 # 1     419       1     419     419     823  100.0  0
MLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIP
QDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSW
TLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASAR
NAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKD
YYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAM
PQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIA
LSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD
>gi|223713588|gb|ACDM01000010.1| GENE   152    165318  -    166289    746    323 aa, chain + ## HITS:1  COG:msbB KEGG:ns NR:ns ## COG: msbB COG1560 # Protein_GI_number: 16129808 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli K12 # 1     323       1     323     323     654  100.0  0
METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFRDPILARLGRFAGRLGK
SSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAELAIRGPEKIQPRVDWQGL
EIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRF
GGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVC
RARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHTIARRMNEEVEIFVGPRPEQYTWIL
KLLKTRKPGEIQPYKRKDLYPIK
>gi|223713588|gb|ACDM01000010.1| GENE   153    166420  -    167862   1458    480 aa, chain - ## HITS:1  COG:pykA KEGG:ns NR:ns ## COG: pykA COG0469 # Protein_GI_number: 16129807 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Escherichia coli K12 # 1     480       1     480     480     884  100.0  0
MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAK
LGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPAD
VVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKA
DIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII
LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAE
VMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDN
VEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALY
RGVTPVHFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE
>gi|223713588|gb|ACDM01000010.1| GENE   154    167990  -    168859    672    289 aa, chain - ## HITS:1  COG:yebK KEGG:ns NR:ns ## COG: yebK COG1737 # Protein_GI_number: 16129806 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     289       1     289     289     538  100.0  1e-153
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT
RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR
AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV
LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR
LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>gi|223713588|gb|ACDM01000010.1| GENE   155    169197  -    170672   1733    491 aa, chain + ## HITS:1  COG:zwf KEGG:ns NR:ns ## COG: zwf COG0364 # Protein_GI_number: 16129805 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Escherichia coli K12 # 1     491       1     491     491    1012  100.0  0
MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTK
VVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFSRLGAMLDQKNRITINYFAMP
PSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQVYRIDHYLG
KETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKAGQMRDMIQNHL
LQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPG
YLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLF
KESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADA
YERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMI
TRDGRSWNEFE
>gi|223713588|gb|ACDM01000010.1| GENE   156    170907  -    172718   1687    603 aa, chain + ## HITS:1  COG:ECs2561 KEGG:ns NR:ns ## COG: ECs2561 COG0129 # Protein_GI_number: 15831815 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli O157:H7 # 1     603       1     603     603    1207  100.0  0
MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASL
KSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQD
GMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGP
MASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQ
LPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGS
TNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVREL
LKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGT
KVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPK
ANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRD
GDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATC
ITF
>gi|223713588|gb|ACDM01000010.1| GENE   157    172755  -    173396    984    213 aa, chain + ## HITS:1  COG:STM1884 KEGG:ns NR:ns ## COG: STM1884 COG0800 # Protein_GI_number: 16765226 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Salmonella typhimurium LT2 # 1     212       1     212     213     373   97.0  1e-103
MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAI
AKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSE
LMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLC
IGGSWLVPADALEAGDYDRITKLAREAVEGAKL
>gi|223713588|gb|ACDM01000010.1| GENE   158    173452  -    174630   1267    392 aa, chain - ## HITS:1  COG:purT KEGG:ns NR:ns ## COG: purT COG0027 # Protein_GI_number: 16129802 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Escherichia coli K12 # 1     392       1     392     392     759  100.0  0
MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVIN
MLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRL
AAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKY
AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMS
PLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIFSEVSPRPHDTGMVTLISQDLSEF
ALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQNVTFDNVQNAVGADLQIRLFGKPEIDG
SRRLGVALATAESVVDAIERAKHAAGQVKVQG
>gi|223713588|gb|ACDM01000010.1| GENE   159    174764  -    175054    389     96 aa, chain + ## HITS:1  COG:ECs2558 KEGG:ns NR:ns ## COG: ECs2558 COG3141 # Protein_GI_number: 15831812 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      96       1      96      96     148  100.0  2e-36
MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW
LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
>gi|223713588|gb|ACDM01000010.1| GENE   160    175121  -    175477    205    118 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_1203 NR:ns ## KEGG: ECIAI39_1203 # Name: yebF # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1     118       5     122     122     222  100.0  4e-57
MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIAASVKRDYQQNRVARWA
DDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHYQVSVDCKAGMAEYQRR
>gi|223713588|gb|ACDM01000010.1| GENE   161    175391  -    175597     90     68 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|188494878|ref|ZP_03002148.1| ## NR: gi|188494878|ref|ZP_03002148.1| hypothetical protein Ec53638_0054 [Escherichia coli 53638] # 1      68       1      68      68     130   98.0  2e-29
MLIARCDAVASSQAYDCGAFWGGQGTRAASANSQSNYQKPLTPLIFRHSRFAVHADLVMN
IGTFTTHG
>gi|223713588|gb|ACDM01000010.1| GENE   162    175804  -    176463    777    219 aa, chain + ## HITS:1  COG:yebE KEGG:ns NR:ns ## COG: yebE COG2979 # Protein_GI_number: 16129799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     219       1     219     219     352  100.0  2e-97
MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLVANKSARKLLTKYGTNA
LLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHID
AKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDI
DHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE
>gi|223713588|gb|ACDM01000010.1| GENE   163    176672  -    178732   1873    686 aa, chain + ## HITS:1  COG:ptrB KEGG:ns NR:ns ## COG: ptrB COG1770 # Protein_GI_number: 16129798 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Escherichia coli K12 # 1     686       1     686     686    1409  100.0  0
MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDR
ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKR
AAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWA
NDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIH
LASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRM
RDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY
VTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLW
IVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIV
HVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGV
AINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDN
VTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFK
SYEGVAMEYAFLVALAQGTLPATPAD
>gi|223713588|gb|ACDM01000010.1| GENE   164    178729  -    179391    783    220 aa, chain - ## HITS:1  COG:exoX KEGG:ns NR:ns ## COG: exoX COG0847 # Protein_GI_number: 16129797 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1     220       1     220     220     459  100.0  1e-129
MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD
KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
>gi|223713588|gb|ACDM01000010.1| GENE   165    179415  -    180071    448    218 aa, chain - ## HITS:1  COG:yobB KEGG:ns NR:ns ## COG: yobB COG0388 # Protein_GI_number: 16129796 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli K12 # 1     218       1     218     218     444  100.0  1e-125
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRR
SRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
SALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
>gi|223713588|gb|ACDM01000010.1| GENE   166    180173  -    180403    338     76 aa, chain - ## HITS:1  COG:no KEGG:ECP_1786 NR:ns ## KEGG: ECP_1786 # Name: not_defined # Def: DNA polymerase III subunit theta (EC:2.7.7.7) # Organism: E.coli_536 # Pathway: Purine metabolism [PATH:ecp00230]; Pyrimidine metabolism [PATH:ecp00240]; Metabolic pathways [PATH:ecp01100]; DNA replication [PATH:ecp03030]; Mismatch repair [PATH:ecp03430]; Homologous recombination [PATH:ecp03440] # 1      76      30     105     105     136  100.0  2e-31
MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLIAHR
LASVNLSRLPYEPKLK
>gi|223713588|gb|ACDM01000010.1| GENE   167    180542  -    180916    371    124 aa, chain + ## HITS:1  COG:yobA KEGG:ns NR:ns ## COG: yobA COG2372 # Protein_GI_number: 16129794 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Escherichia coli K12 # 1     124       1     124     124     224  100.0  4e-59
MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGF
SGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYT
FSVK
>gi|223713588|gb|ACDM01000010.1| GENE   168    180920  -    181792    712    290 aa, chain + ## HITS:1  COG:yebZ KEGG:ns NR:ns ## COG: yebZ COG1276 # Protein_GI_number: 16129793 # Func_class: P Inorganic ion transport and metabolism # Function: Putative copper export protein # Organism: Escherichia coli K12 # 1     290       1     290     290     476  100.0  1e-134
MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATA
MLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLF
MLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWR
HQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVI
ALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF
>gi|223713588|gb|ACDM01000010.1| GENE   169    181805  -    182146    373    113 aa, chain + ## HITS:1  COG:no KEGG:SSON_1309 NR:ns ## KEGG: SSON_1309 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     113       1     113     113     195  100.0  4e-49
MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPS
TLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC
>gi|223713588|gb|ACDM01000010.1| GENE   170    182542  -    183198    516    218 aa, chain + ## HITS:1  COG:pphA KEGG:ns NR:ns ## COG: pphA COG0639 # Protein_GI_number: 16129791 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1     218       2     219     219     429  100.0  1e-120
MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQ
SLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGDWFIALADNQQKQAKTALE
KCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSRLGERQKGQGITGA
DHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ
>gi|223713588|gb|ACDM01000010.1| GENE   171    183199  -    183474    183     91 aa, chain - ## HITS:1  COG:no KEGG:SbBS512_E2105 NR:ns ## KEGG: SbBS512_E2105 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1      91       1      91      91     191  100.0  8e-48
MAGYLSWLFPRCKISPKLNGTAPHFGDEMFALVLFVCYLDGGCEDIVVDVYNTEQQCLYS
MSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF
>gi|223713588|gb|ACDM01000010.1| GENE   172    183495  -    183731    223     78 aa, chain - ## HITS:1  COG:no KEGG:ECSP_2410 NR:ns ## KEGG: ECSP_2410 # Name: yebV # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      78       1      78      78     157  100.0  2e-37
MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSV
LYRTRYDQQSDAWIMRLA
>gi|223713588|gb|ACDM01000010.1| GENE   173    183849  -    185288   1208    479 aa, chain - ## HITS:1  COG:yebU_1 KEGG:ns NR:ns ## COG: yebU_1 COG0144 # Protein_GI_number: 16129788 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Escherichia coli K12 # 1     383       3     385     385     791   99.0  0
MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPY
GWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR
VMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF
GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGG
TLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDC
EGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGVGLNWDENLRLWQR
DKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNMNAFELTPQE
AEEWYRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLFTGNA
>gi|223713588|gb|ACDM01000010.1| GENE   174    185368  -    188001   2564    877 aa, chain - ## HITS:1  COG:yebT KEGG:ns NR:ns ## COG: yebT COG3008 # Protein_GI_number: 16129787 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Escherichia coli K12 # 1     877       3     879     879    1728  100.0  0
MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQDRGNTVTIDFMSADGIV
PGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGV
SGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVY
FRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKL
ESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPL
MYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLT
GKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDAGQPLILHGVQVGQ
VIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWINGG
IRILPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEV
GEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALK
GAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDI
GQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYIN
VEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMT
LGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAF
ATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK
>gi|223713588|gb|ACDM01000010.1| GENE   175    187970  -    189148    783    392 aa, chain - ## HITS:1  COG:ECs2543 KEGG:ns NR:ns ## COG: ECs2543 COG2995 # Protein_GI_number: 15831797 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli O157:H7 # 1     392      36     427     427     771  100.0  0
MLFSLPEINSHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLG
IRIDANVMQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWFGNRLGMNLRPVLLM
LERLKEWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWE
RFYPQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIV
LLLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFTL
LLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYF
GAAVILTILAVEWLDSRLLWDAHESGNARFDD
>gi|223713588|gb|ACDM01000010.1| GENE   176    189383  -    189880    302    165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 3     159       6     161     165 120  41 5e-26
MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF
QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG
VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG
>gi|223713588|gb|ACDM01000010.1| GENE   177    189977  -    190675    542    232 aa, chain + ## HITS:1  COG:proQm KEGG:ns NR:ns ## COG: proQm COG3109 # Protein_GI_number: 16132234 # Func_class: T Signal transduction mechanisms # Function: Activator of osmoprotectant transporter ProP # Organism: Escherichia coli K12 # 1     232       1     232     232     387  100.0  1e-108
MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSA
LRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAK
KREAAATAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPV
SDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF
>gi|223713588|gb|ACDM01000010.1| GENE   178    190695  -    192743   2120    682 aa, chain + ## HITS:1  COG:prc KEGG:ns NR:ns ## COG: prc COG0793 # Protein_GI_number: 16129784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Escherichia coli K12 # 1     682       1     682     682    1321  100.0  0
MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQF
DLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDELRSGKLDVFYDLYNLAQ
KRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAELNALWDSKVKFDELSLKLT
GKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTE
MSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRL
DDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRERIRLEDRAVKMSVKTVGKEKVGVL
DIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVR
DNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTV
QQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETG
EKFEDNALPWDSIDAATYVKSGDLTAFEPELLKEHNARIAKDPEFQNIMKDIARFNAMKD
KRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETV
NIALDLAKLEKARPAEQPAPVK
>gi|223713588|gb|ACDM01000010.1| GENE   179    192938  -    193816    864    292 aa, chain + ## HITS:1  COG:htpX KEGG:ns NR:ns ## COG: htpX COG0501 # Protein_GI_number: 16129783 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli K12 # 1     292       2     293     293     546  100.0  1e-155
MRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGFGGSFVSLLMSKWMALRS
VGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVS
TGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRILAQLAAGFMGGN
RDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAA
LQRLKTSYEPQEATSMMALCINGKSKSLSELFMTHPPLDKRIEALRTGEYLK
>gi|223713588|gb|ACDM01000010.1| GENE   180    193862  -    195235    974    457 aa, chain - ## HITS:1  COG:yebQ KEGG:ns NR:ns ## COG: yebQ COG0477 # Protein_GI_number: 16129782 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     457      38     494     494     753  100.0  0
MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAY
QIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAA
LMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLG
IIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVV
MVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLG
RSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPAD
INIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGAALVALML
NQFGDNGTHVSLMAAAILAVIAACVSGLRITQPRSRA
>gi|223713588|gb|ACDM01000010.1| GENE   181    195412  -    196203    935    263 aa, chain + ## HITS:1  COG:kdgR KEGG:ns NR:ns ## COG: kdgR COG1414 # Protein_GI_number: 16129781 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     263       1     263     263     494  100.0  1e-140
MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGY
VAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVY
IHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITST
EALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQE
YVAMLHTAARKISAQMGYHDYPF
>gi|223713588|gb|ACDM01000010.1| GENE   182    196347  -    196586    256     79 aa, chain - ## HITS:1  COG:no KEGG:ECO103_2017 NR:ns ## KEGG: ECO103_2017 # Name: yobH # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      79       1      79      79     141  100.0  8e-33
MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGF
LGITDCPLLRKSNIVVDNG
>gi|223713588|gb|ACDM01000010.1| GENE   183    196963  -    197250    254     95 aa, chain + ## HITS:1  COG:no KEGG:ECS88_1877 NR:ns ## KEGG: ECS88_1877 # Name: yebO # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      95       1      95      95     134  100.0  1e-30
MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIELLEALLDQQKRQNALL
RRLCEANEPEKADKKTVESQKSVEDEDIIRLVAER
>gi|223713588|gb|ACDM01000010.1| GENE   184    198076  -    198285    338     69 aa, chain + ## HITS:1  COG:ECs2533 KEGG:ns NR:ns ## COG: ECs2533 COG1278 # Protein_GI_number: 15831787 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      69       1      69      69     120  100.0  5e-28
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG
PAAVNVTAI
>gi|223713588|gb|ACDM01000010.1| GENE   185    198451  -    199260    553    269 aa, chain + ## HITS:1  COG:rrmA KEGG:ns NR:ns ## COG: rrmA COG0500 # Protein_GI_number: 16129776 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     269       1     269     269     556  100.0  1e-158
MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRA
FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV
AIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPG
PRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLRGDEAVALLQMTPFAWRA
KPEVWQTLAAKEVFDCQTDFNIHLWQRSY
>gi|223713588|gb|ACDM01000010.1| GENE   186    199257  -    199823    678    188 aa, chain - ## HITS:1  COG:ECs2531 KEGG:ns NR:ns ## COG: ECs2531 COG1971 # Protein_GI_number: 15831785 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     188      19     206     206     324  100.0  5e-89
MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML
ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAM
AVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ
ILWTHFHG
>gi|223713588|gb|ACDM01000010.1| GENE   187    200252  -    200710    298    152 aa, chain - ## HITS:1  COG:yobD KEGG:ns NR:ns ## COG: yobD COG4811 # Protein_GI_number: 16129774 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     152       1     152     152     256  100.0  1e-68
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN
NVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSRIKAMNLSEDG
VLVMQLEQRRLLIRVRNIDDLEKIYKLLVSTQ
>gi|223713588|gb|ACDM01000010.1| GENE   188    200765  -    201616   1058    283 aa, chain - ## HITS:1  COG:ECs2529 KEGG:ns NR:ns ## COG: ECs2529 COG3716 # Protein_GI_number: 15831783 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1     283       4     286     286     559  100.0  1e-159
MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEA
RKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGD
PIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYGYSKGIDIVKDM
GGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMP
GLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGYACGLLGL
>gi|223713588|gb|ACDM01000010.1| GENE   189    201629  -    202429   1029    266 aa, chain - ## HITS:1  COG:ECs2528 KEGG:ns NR:ns ## COG: ECs2528 COG3715 # Protein_GI_number: 15831782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1     266       1     266     266     394  100.0  1e-109
MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLGDMKTGIIIGGTLEMIA
LGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAF
QHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVALSVGTSEVQNMLNAIPEVVTN
GLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAAFTNFNLVALGVIGTVMAVLYIQ
LSPKYNRVAGAPAQAAGNNDLDNELD
>gi|223713588|gb|ACDM01000010.1| GENE   190    202492  -    203463   1212    323 aa, chain - ## HITS:1  COG:ECs2527_2 KEGG:ns NR:ns ## COG: ECs2527_2 COG3444 # Protein_GI_number: 15831781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 158     323       1     166     166     311  100.0  1e-84
MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTK
GVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVE
TGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPNDYMVIGLARIDDRLIHGQVAT
RWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERV
MLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGIE
LEVRKVSTDPKLKMMDLISKIDK
>gi|223713588|gb|ACDM01000010.1| GENE   191    203926  -    205482   1881    518 aa, chain + ## HITS:1  COG:yoaE_2 KEGG:ns NR:ns ## COG: yoaE_2 COG1253 # Protein_GI_number: 16129770 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli K12 # 231     518       1     288     288     540  100.0  1e-153
MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLLGLSLALIMRLG
LLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKATTELHERLENRDHDSGHGK
GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN
QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIIIEVFNQIARRNFIRHQS
TLPLRARTADAILRLMGGKRQANVQHDADNPMPMPIPEGAFAEEERYMINGVLTLASRSL
RGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG
VDVAAIASASPAIIVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAG
EFPDADETPEIITDGDGWLVKGGTDLHALQQALDVEHLADDDDIATVAGLVISANGHIPR
VGDVIDVGPLHITIIEANDYRVDLVRIVKEQPAHDEDE
>gi|223713588|gb|ACDM01000010.1| GENE   192    205486  -    207084   1316    532 aa, chain - ## HITS:1  COG:yoaD_2 KEGG:ns NR:ns ## COG: yoaD_2 COG2200 # Protein_GI_number: 16129769 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 261     532       1     272     272     561  100.0  1e-159
MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQRVVQFANHAVEELDKV
LLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLVQDGTLYCSSIFGYRNVPV
VDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSNAGVMEMINIDLLTAMLLEPQ
LPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVSSQRFPFTINVNGPGATALAWHY
LPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQCIGV
EILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHVGINVA
PSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVKLAIDDFG
TGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQE
QAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR
>gi|223713588|gb|ACDM01000010.1| GENE   193    207215  -    208579   1421    454 aa, chain - ## HITS:1  COG:sdaA KEGG:ns NR:ns ## COG: sdaA COG1760 # Protein_GI_number: 16129768 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli K12 # 1     454       1     454     454     925  100.0  0
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGH
HTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNL
PLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAY
CNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
SALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY
DHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGG
SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVS
LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
>gi|223713588|gb|ACDM01000010.1| GENE   194    208763  -    209341    428    192 aa, chain - ## HITS:1  COG:ECs2522 KEGG:ns NR:ns ## COG: ECs2522 COG0494 # Protein_GI_number: 15831776 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     192       1     192     192     342   99.0  2e-94
MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQPGLLLTQRSIHLRKHAG
QVAFPGGAVDDTDASAIAAALREAEEEVAIPPSAVEVIGVLPPVDSVTGYQVTPVVGIIP
PDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDSHRVWLSWYEQYFVWGMTAGI
IRELALQIGVKP
>gi|223713588|gb|ACDM01000010.1| GENE   195    209345  -    210706   1052    453 aa, chain - ## HITS:1  COG:pabB KEGG:ns NR:ns ## COG: pabB COG0147 # Protein_GI_number: 16129766 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Escherichia coli K12 # 1     453       1     453     453     927   99.0  0
MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTF
GKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPFQGGALGLFGYDLGRRFES
LPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDVNARRAWLESQQFSPQEDFTL
TSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAP
FSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDR
AENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRA
AFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTLTAINGQIF
CSAGGGIVADSQEEAEYQETFDKVNRILKQLEK
>gi|223713588|gb|ACDM01000010.1| GENE   196    210780  -    210959    347     59 aa, chain + ## HITS:1  COG:ECs2520 KEGG:ns NR:ns ## COG: ECs2520 COG3140 # Protein_GI_number: 15831774 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      59       1      59      59      83  100.0  1e-16
MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE
>gi|223713588|gb|ACDM01000010.1| GENE   197    211079  -    211378    233     99 aa, chain - ## HITS:1  COG:no KEGG:S1533 NR:ns ## KEGG: S1533 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      99      21     119     119     187  100.0  7e-47
MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNP
GFTEKMVGWAKKMETGERSVIKNPEYFSTYMQEELKALV
>gi|223713588|gb|ACDM01000010.1| GENE   198    211800  -    212144    469    114 aa, chain - ## HITS:1  COG:yoaB KEGG:ns NR:ns ## COG: yoaB COG0251 # Protein_GI_number: 16129763 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1     114      17     130     130     209  100.0  9e-55
MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSI
LDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV
>gi|223713588|gb|ACDM01000010.1| GENE   199    212276  -    214186   1667    636 aa, chain + ## HITS:1  COG:ECs2517 KEGG:ns NR:ns ## COG: ECs2517 COG1199 # Protein_GI_number: 15831771 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Escherichia coli O157:H7 # 1     636       1     636     636    1265  100.0  0
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL
RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG
DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF
VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW
YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL
LLPSPFDYSRQALLCVPRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL
PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
>gi|223713588|gb|ACDM01000010.1| GENE   200    214244  -    214939    685    231 aa, chain + ## HITS:1  COG:yeaZ KEGG:ns NR:ns ## COG: yeaZ COG1214 # Protein_GI_number: 16129761 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Escherichia coli K12 # 1     231       1     231     231     452  100.0  1e-127
MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALA
YGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMG
EVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLV
LRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYLRNNVAWKKLPGKE
>gi|223713588|gb|ACDM01000010.1| GENE   201    214979  -    215560    571    193 aa, chain + ## HITS:1  COG:ECs2515 KEGG:ns NR:ns ## COG: ECs2515 COG3065 # Protein_GI_number: 15831769 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Escherichia coli O157:H7 # 1     193       1     193     193     358   98.0  2e-99
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG
KVVAVQNQQGKTRLEIATVPLDSGARPTLGELSRGRIYADVNGFLDPVDFRGQLVTVVGP
ITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWY
NPGPARVQTVVTE
>gi|223713588|gb|ACDM01000010.1| GENE   202    215699  -    217450   1680    583 aa, chain + ## HITS:1  COG:fadD KEGG:ns NR:ns ## COG: fadD COG0318 # Protein_GI_number: 16129759 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 23     583       1     561     561    1149   99.0  0
MLMACISFGVAMTTNTHFRGEELKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYAD
QPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAG
MIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLST
AKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQ
NLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQ
QVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNE
VPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMI
LVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCR
RQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
>gi|223713588|gb|ACDM01000010.1| GENE   203    217532  -    218647   1124    371 aa, chain + ## HITS:1  COG:rnd KEGG:ns NR:ns ## COG: rnd COG0349 # Protein_GI_number: 16129758 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease D # Organism: Escherichia coli K12 # 1     371       5     375     375     729  100.0  0
MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS
PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE
YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR
LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL
WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR
KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE
ALHNLLQEYPQ
>gi|223713588|gb|ACDM01000010.1| GENE   204    218701  -    219666    604    321 aa, chain - ## HITS:1  COG:yeaX KEGG:ns NR:ns ## COG: yeaX COG1018 # Protein_GI_number: 16129757 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1     321       1     321     321     648  100.0  0
MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSL
LSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTPNNLFALIPSARKHLFIAG
GIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLE
LARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA
RSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERA
SQQSMLICCSRAKGKRLVLDL
>gi|223713588|gb|ACDM01000010.1| GENE   205    219722  -    220846   1230    374 aa, chain - ## HITS:1  COG:ECs2511 KEGG:ns NR:ns ## COG: ECs2511 COG4638 # Protein_GI_number: 15831765 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1     374       1     374     374     801  100.0  0
MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANAN
DYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDG
NLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACP
EVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQY
GFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIY
FTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG
IAHFHNLLAQVFKD
>gi|223713588|gb|ACDM01000010.1| GENE   206    220878  -    222308   1460    476 aa, chain - ## HITS:1  COG:ECs2510 KEGG:ns NR:ns ## COG: ECs2510 COG1292 # Protein_GI_number: 15831764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli O157:H7 # 1     476       6     481     481     899  100.0  0
MGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLN
IAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAAITGVR
PQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILLSGGIF
CLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNFLQMSLF
TDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTVGCWFFF
GVMESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMIIFLASHM
DAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTVVLTALP
FLVILLVKVGGFIRWLKQDYADIPAHQVEHYLPQTPVEALEKTPVLPAGTVFKGDN
>gi|223713588|gb|ACDM01000010.1| GENE   207    222514  -    223599   1054    361 aa, chain - ## HITS:1  COG:yeaU KEGG:ns NR:ns ## COG: yeaU COG0473 # Protein_GI_number: 16129754 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1     361       1     361     361     763  100.0  0
MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPD
DWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGVPCPLA
GKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQESVFTRRGVDRILRYAFELAQS
RPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRWDKQHIDILCARFVMQPERFDVV
VASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIAT
IWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIAHGPKTPDMKGNATTPQVADAICKIIL
R
>gi|223713588|gb|ACDM01000010.1| GENE   208    223702  -    224625    856    307 aa, chain + ## HITS:1  COG:ECs2508 KEGG:ns NR:ns ## COG: ECs2508 COG0583 # Protein_GI_number: 15831762 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     307       8     314     314     623   99.0  1e-178
MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVT
ITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKA
YPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGA
PKHLTDLSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGI
ALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITVEFLRQYFAEHYP
NFSLEHA
>gi|223713588|gb|ACDM01000010.1| GENE   209    224752  -    225390    488    212 aa, chain + ## HITS:1  COG:yeaS KEGG:ns NR:ns ## COG: yeaS COG1280 # Protein_GI_number: 16129752 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1     212       1     212     212     359  100.0  2e-99
MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVSSGMKGGYLAACGVFIGDAVLMFL
AWAGVATLIKTTPILFNIVRYLGAFYLLYLGSKILYATLKGKNSEAKSDEPQYGAIFKRA
LILSLTNPKAILFYVSFFVQFIDVNAPHTGISFFILAATLELVSFCYLSFLIISGAFVTQ
YIRTKKKLAKVGNSLIGLMFVGFAARLATLQS
>gi|223713588|gb|ACDM01000010.1| GENE   210    225563  -    225922    362    119 aa, chain + ## HITS:1  COG:ECs2506 KEGG:ns NR:ns ## COG: ECs2506 COG3615 # Protein_GI_number: 15831760 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein/domain, possibly involved in tellurite resistance # Organism: Escherichia coli O157:H7 # 1     119       1     119     119     243  100.0  6e-65
MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHS
AEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGAQQRKVIHNGK
>gi|223713588|gb|ACDM01000010.1| GENE   211    225926  -    226108    292     60 aa, chain + ## HITS:1  COG:no KEGG:ECB_01765 NR:ns ## KEGG: ECB_01765 # Name: yoaG # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      60       1      60      60      96  100.0  3e-19
MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW
>gi|223713588|gb|ACDM01000010.1| GENE   212    226256  -    226504    330     82 aa, chain + ## HITS:1  COG:YPO1181 KEGG:ns NR:ns ## COG: YPO1181 COG2261 # Protein_GI_number: 16121476 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 1      82      26     107     107      99   82.0  2e-21
MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGGWISTLFGFGKVDGFNF
GSFVVAVIGAIVVLFIYRKIKS
>gi|223713588|gb|ACDM01000010.1| GENE   213    226771  -    227796    760    341 aa, chain - ## HITS:1  COG:yeaP_2 KEGG:ns NR:ns ## COG: yeaP_2 COG2199 # Protein_GI_number: 16129748 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 168     341       1     174     174     351  100.0  1e-96
MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ
KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS
FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT
GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN
TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI
VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS
>gi|223713588|gb|ACDM01000010.1| GENE   214    227979  -    228233    142     84 aa, chain + ## HITS:1  COG:yoaF KEGG:ns NR:ns ## COG: yoaF COG3042 # Protein_GI_number: 16129747 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Escherichia coli K12 # 1      84       1      84      84     154  100.0  3e-38
MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN
CKLPGGETIDEWALWRRDHPAGEK
>gi|223713588|gb|ACDM01000010.1| GENE   215    228255  -    228602    450    115 aa, chain - ## HITS:1  COG:yeaO KEGG:ns NR:ns ## COG: yeaO COG3189 # Protein_GI_number: 16129746 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     115       8     122     122     222  100.0  2e-58
MNIQCKRVYDPAEQSDGYRILVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD
YATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYSAKNTTQNHALVLADWLRSL
>gi|223713588|gb|ACDM01000010.1| GENE   216    228657  -    229838    570    393 aa, chain - ## HITS:1  COG:yeaN KEGG:ns NR:ns ## COG: yeaN COG2807 # Protein_GI_number: 16129745 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Escherichia coli K12 # 1     393       1     393     393     641  100.0  0
MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAYSLTTAQTGLLTTLPLL
AFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPYLLFGGTAVIGGGIALGNV
LLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLALNGFGWQGALLMLMCFPLLA
LFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTLFLGINSLVYYVIIGWLPAILIS
HGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQRGIAAFVALMCAVGAVGLCFMPAH
AITWTLLFGFGSGATMILGLTFIGLRASSAHQAAALSGMAQSVGYLLAACGPPLMGKIHD
ANGNWSVPLMGVAILSLLMAIFGLCAGRDKEIR
>gi|223713588|gb|ACDM01000010.1| GENE   217    229938  -    230756    321    272 aa, chain + ## HITS:1  COG:yeaM KEGG:ns NR:ns ## COG: yeaM COG2207 # Protein_GI_number: 16129744 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     272       2     273     273     519  100.0  1e-147
MHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWM
VPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANR
TTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGALGQWA
GFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFI
TMFKKGLGQTPGRYIARLTTVSPQSAKPDPRQ
>gi|223713588|gb|ACDM01000010.1| GENE   218    230713  -    231159    614    148 aa, chain - ## HITS:1  COG:yeaL KEGG:ns NR:ns ## COG: yeaL COG2707 # Protein_GI_number: 16129743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     148       1     148     148     188  100.0  3e-48
MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFPWIEKQGLSIGIIILTI
GVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGSQPQLVAGLLVGT
VLGVALFRGVPVGPLIAAGLVSLIVGKQ
>gi|223713588|gb|ACDM01000010.1| GENE   219    231434  -    231937    517    167 aa, chain - ## HITS:1  COG:ECs2496 KEGG:ns NR:ns ## COG: ECs2496 COG2606 # Protein_GI_number: 15831750 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     167       1     167     167     320  100.0  8e-88
MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKG
NGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLK
LVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA
>gi|223713588|gb|ACDM01000010.1| GENE   220    231980  -    233452   1069    490 aa, chain - ## HITS:1  COG:yeaJ_2 KEGG:ns NR:ns ## COG: yeaJ_2 COG2199 # Protein_GI_number: 16129740 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 325     490       1     166     166     326  100.0  7e-89
MLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMR
ALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDCDTIVEAAAL
LPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQS
GSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLR
NIFYTHDRPLLWRFLNVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDIL
YFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRL
QKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDE
FCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLY
VNKQNKNSRS
>gi|223713588|gb|ACDM01000010.1| GENE   221    233651  -    234994    827    447 aa, chain - ## HITS:1  COG:yeaI_2 KEGG:ns NR:ns ## COG: yeaI_2 COG2199 # Protein_GI_number: 16129739 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 267     447       1     181     181     356  100.0  6e-98
MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNAVI
FLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVSIFYI
FRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYNADYSLY
VVDYCPDNHTATWGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLASLCCNLLL
LTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLTNIYNRRYFFN
SVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDILARL
EGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRNI
SLVMTEADKALREAKSEGGNKVIIHHI
>gi|223713588|gb|ACDM01000010.1| GENE   222    235273  -    236556    947    427 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34 [Phaeobacter gallaeciensis BS107] # 1     418       1     433     445 369  44 1e-101
MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDIS
EPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQIS
KDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAM
TAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYE
KRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKE
VDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEI
LAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHK
QNATAKG
>gi|223713588|gb|ACDM01000010.1| GENE   223    236669  -    238603   2003    644 aa, chain - ## HITS:1  COG:ECs2492 KEGG:ns NR:ns ## COG: ECs2492 COG2766 # Protein_GI_number: 15831746 # Func_class: T Signal transduction mechanisms # Function: Putative Ser protein kinase # Organism: Escherichia coli O157:H7 # 1     644       1     644     644    1293  100.0  0
MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL
SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA
ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA
AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN
DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL
AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT
LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS
TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA
EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI
EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS
FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS
>gi|223713588|gb|ACDM01000010.1| GENE   224    239039  -    239785    872    248 aa, chain + ## HITS:1  COG:yeaF KEGG:ns NR:ns ## COG: yeaF COG3713 # Protein_GI_number: 16129736 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Escherichia coli K12 # 1     248       1     248     248     467  100.0  1e-132
MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDTDVYPVPVINYEGDNFW
FRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHLDDRKSTMMAGLSYAHFTQ
YGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKE
SARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLI
STGITYKF
>gi|223713588|gb|ACDM01000010.1| GENE   225    239875  -    240729    854    284 aa, chain + ## HITS:1  COG:yeaE KEGG:ns NR:ns ## COG: yeaE COG0656 # Protein_GI_number: 16129735 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli K12 # 1     284       1     284     284     546  100.0  1e-155
MQQKMIQFSGDVSLPAVGQGTWYMGEDASQRKTEVAALRAGIELGLTLIDTAEMYADGGA
EKVVGEALTGLREKVFLVSKVYPWNAGGQKAINACEASLRRLNTDYLDLYLLHWSGSFAF
EETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLL
PWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHAHNISAAQVLLAWVISHQGVMAI
PKAATIAHVQQNAAVLEVELSSAELAMLDKAYPAPKGKTALDMV
>gi|223713588|gb|ACDM01000010.1| GENE   226    240777  -    241661   1014    294 aa, chain - ## HITS:1  COG:yeaD KEGG:ns NR:ns ## COG: yeaD COG0676 # Protein_GI_number: 16129734 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzymes related to aldose 1-epimerase # Organism: Escherichia coli K12 # 1     294       8     301     301     617  100.0  1e-177
MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQGAHLLSWKPAGEEEVLW
LSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGVALTFE
LTQSEETKKFWPHDFTLLAHFRVGKTCEIDLESHGEFETTSALHTYFNVGDIAKVSVSGL
GDRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVV
GWNPGPALSISMGDMPDDGYKTFVCVETAYASETQKVTKEKPAHLAQSIRVAKR
>gi|223713588|gb|ACDM01000010.1| GENE   227    241745  -    242740   1180    331 aa, chain - ## HITS:1  COG:ECs2488 KEGG:ns NR:ns ## COG: ECs2488 COG0057 # Protein_GI_number: 15831742 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     331       1     331     331     635  100.0  0
MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV
KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT
GPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT
ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV
VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA
LNDNFVKLVSWYDNETGYSNKVLDLIAHISK
>gi|223713588|gb|ACDM01000010.1| GENE   228    243082  -    243495    263    137 aa, chain + ## HITS:1  COG:ECs2487 KEGG:ns NR:ns ## COG: ECs2487 COG0229 # Protein_GI_number: 15831741 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Escherichia coli O157:H7 # 1     137       1     137     137     285  100.0  2e-77
MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKY
DSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVN
SASLRFTDGENGEEING
>gi|223713588|gb|ACDM01000010.1| GENE   229    243537  -    243809    344     90 aa, chain + ## HITS:1  COG:yeaC KEGG:ns NR:ns ## COG: yeaC COG3139 # Protein_GI_number: 16129731 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      90      16     105     105     170  100.0  7e-43
MNLDDIINSMMPEVYQRLSTAVELGKWPDGVALTEEQKENCLQLVMLWQARHNIEAQHMT
IDTNGQMVMKSKQQLKEDFGISAKPIAMFK
>gi|223713588|gb|ACDM01000010.1| GENE   230    244179  -    245255   1220    358 aa, chain + ## HITS:1  COG:ydjL KEGG:ns NR:ns ## COG: ydjL COG1063 # Protein_GI_number: 16129730 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     358       1     358     358     739  100.0  0
MKALARFGKAFGGYKMIDVPQPMCGPEDVVIEIKAAAICGADMKHYNVDSGSDEFNSIRG
HEFAGCIAQVGEKVKDWKVGQRVVSDNSGHVCGVCPACEQGDFLCCTEKVNLGLDNNTWG
GGFSKYCLVPGEILKIHRHALWEIPDGVDYEDAAVLDPICNAYKSIAQQSKFLPGQDVVV
IGTGPLGLFSVQMARIMGAVNIVVVGLQEDVAVRFPVAKELGATAVVNGSTEDVVARCQQ
ICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRVGMGFKPLDFSINDITAWNKSIIGH
MAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQWREGFDAMVDKTAIKVIMTYDFDE
>gi|223713588|gb|ACDM01000010.1| GENE   231    245282  -    246661    905    459 aa, chain + ## HITS:1  COG:ydjK KEGG:ns NR:ns ## COG: ydjK COG0477 # Protein_GI_number: 16129729 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     459       1     459     459     831  100.0  0
MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGLILAQLKALGWTDNSTT
ATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDFLIACRFV
MGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNW
RVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPV
VIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINLKD
SIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAVLGYIYSLQTSMLLITLIGF
FLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGVTG
VFILLGAVSIIVAIAIATIGIETKGVSVESLSIDAVANK
>gi|223713588|gb|ACDM01000010.1| GENE   232    246678  -    247721    838    347 aa, chain + ## HITS:1  COG:ydjJ KEGG:ns NR:ns ## COG: ydjJ COG1063 # Protein_GI_number: 16129728 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     347       1     347     347     700   99.0  0
MKNSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFESGPFIPPKDPNQE
IGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPN
YRGALTHYLCHPESFTYKLPDNMDTMEGALVEAAAVGMHAAMLADVKPGKKIIILGAGCI
GLMTLQACKCLGATEIAVVDVLEKRLAMAEQLGATVVINGAKEDTIARCQQFTEDMGADI
VFETAGSAVTVKQAPYLVMRGGKIMIVGTVPGDSAINFLKINREVTIQTVFRYANRYPVT
IEAISSGRFDVKSMVTHIYDYRDVQQAFEESVNNKRDIIKGVIKISD
>gi|223713588|gb|ACDM01000010.1| GENE   233    247742  -    248578    750    278 aa, chain + ## HITS:1  COG:ydjI KEGG:ns NR:ns ## COG: ydjI COG0191 # Protein_GI_number: 16129727 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli K12 # 1     278       1     278     278     553  100.0  1e-157
MLADIRYWENDATNKHYAIAHFNVWNAEMLMGVIDAAEEAKSPVIISFGTGFVGNTSFED
FSHMMVSMAQKATVPVITHWDHGRSMEIIHNAWTHGMNSLMRDASAFDFEENIRLTKEAV
DFFHPLGIPVEAELGHVGNETVYEEALAGYHYTDPDQAAEFVERTGCDSLAVAIGNQHGV
YTSEPQLNFEVVKRVRDAVSVPLVLHGASGISDADIKTAISLGIAKINIHTELCQAAMVA
VKENQDQPFLHLEREVRKAVKERALEKIKLFGSDGKAE
>gi|223713588|gb|ACDM01000010.1| GENE   234    248583  -    249530    772    315 aa, chain + ## HITS:1  COG:ydjH KEGG:ns NR:ns ## COG: ydjH COG0524 # Protein_GI_number: 16129726 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1     315       8     322     322     609  100.0  1e-174
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL
MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK
LNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETL
DDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGV
KNRKLVEQLLEEYEG
>gi|223713588|gb|ACDM01000010.1| GENE   235    249540  -    250520    806    326 aa, chain + ## HITS:1  COG:ydjG KEGG:ns NR:ns ## COG: ydjG COG0667 # Protein_GI_number: 16129725 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     326       1     326     326     669  100.0  0
MKKIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYN
FGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAA
SLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDADHIREYL
QYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYSPLEQGLLTGTITRDYVPGGARA
NKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLALAWILKQSDLISILSGATAPEQVRE
NVAALNINLSDADATLMREMAEALER
>gi|223713588|gb|ACDM01000010.1| GENE   236    250657  -    251415    547    252 aa, chain + ## HITS:1  COG:ydjF KEGG:ns NR:ns ## COG: ydjF COG1349 # Protein_GI_number: 16129724 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     252       1     252     252     468  100.0  1e-132
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
AFCKDNNIQLVW
>gi|223713588|gb|ACDM01000010.1| GENE   237    251532  -    252890    741    452 aa, chain + ## HITS:1  COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     452       1     452     452     801  100.0  0
MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNA
AFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLM
GTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFL
LGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQS
NSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSIL
MTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMI
FFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFM
VLGVMLLLCALVLSIFGIETRKVSLEEISEVN
>gi|223713588|gb|ACDM01000010.1| GENE   238    252983  -    253624    666    213 aa, chain - ## HITS:1  COG:pncA KEGG:ns NR:ns ## COG: pncA COG1335 # Protein_GI_number: 16129722 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1     213       7     219     219     443  100.0  1e-125
MPPRALLLVDLQNDFCAGGALAVPEGDSTVDVANRLIDWCQSRGEAVIASQDWHPANHGS
FASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLHQKAIAAVFHKGENPLVDSY
SAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFTVLDALQLGYKVNVITDGCRG
VNIQPQDSAHAFMEMSAAGATLYTLADWEETQG
>gi|223713588|gb|ACDM01000010.1| GENE   239    253635  -    254651    951    338 aa, chain - ## HITS:1  COG:ECs2474 KEGG:ns NR:ns ## COG: ECs2474 COG0252 # Protein_GI_number: 15831728 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 1     338       1     338     338     680  100.0  0
MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDS
SDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIP
LAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTTKAHADGFDAFASPNLPPL
LEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILR
SYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADM
TVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTPDD
>gi|223713588|gb|ACDM01000010.1| GENE   240    254818  -    256674   1873    618 aa, chain - ## HITS:1  COG:sppA KEGG:ns NR:ns ## COG: sppA COG0616 # Protein_GI_number: 16129720 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Escherichia coli K12 # 1     618       1     618     618    1211  100.0  0
MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALL
LDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDL
KNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLH
GFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYL
NTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFG
WSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDAR
LDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANY
IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLS
IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA
KVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAA
FNDPQNRYAFCLTCANMR
>gi|223713588|gb|ACDM01000010.1| GENE   241    256617  -    256781     75     54 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_2054 NR:ns ## KEGG: ECUMN_2054 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      54       1      54      54     100   98.0  2e-20
MLQHSPQFLLTSTGWVITITTSIAPVTGVTLSWENTCEPFGDLLPDFLNGRGVC
>gi|223713588|gb|ACDM01000010.1| GENE   242    256835  -    257386    617    183 aa, chain + ## HITS:1  COG:ECs2471 KEGG:ns NR:ns ## COG: ECs2471 COG0778 # Protein_GI_number: 15831725 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli O157:H7 # 1     183       1     183     183     363  100.0  1e-101
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA
VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM
AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFV
TYF
>gi|223713588|gb|ACDM01000010.1| GENE   243    257503  -    258546   1152    347 aa, chain + ## HITS:1  COG:selD KEGG:ns NR:ns ## COG: selD COG0709 # Protein_GI_number: 16129718 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Escherichia coli K12 # 1     347       1     347     347     679  100.0  0
MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLVGNETRDDAAVYDLGNG
TSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAILGWPINKLSPEIARE
VTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPL
GIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEM
CQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLCDPQ
TSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPARGGRAMVEIR
>gi|223713588|gb|ACDM01000010.1| GENE   244    258551  -    260512   1787    653 aa, chain + ## HITS:1  COG:topB KEGG:ns NR:ns ## COG: topB COG0550 # Protein_GI_number: 16129717 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Escherichia coli K12 # 1     653       1     653     653    1326  100.0  0
MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR
WNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQ
LAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAY
TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW
QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE
AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLP
QPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVF
RKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV
VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGF
LTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY
QLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSGAIA
>gi|223713588|gb|ACDM01000010.1| GENE   245    260640  -    261680    296    346 aa, chain + ## HITS:1  COG:no KEGG:B21_01719 NR:ns ## KEGG: B21_01719 # Name: ynjI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     346       1     346     346     700  100.0  0
MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAIT
SNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLI
APYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESY
CALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIW
AAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHIC
CYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS
>gi|223713588|gb|ACDM01000010.1| GENE   246    261797  -    263140   1429    447 aa, chain - ## HITS:1  COG:gdhA KEGG:ns NR:ns ## COG: gdhA COG0334 # Protein_GI_number: 16129715 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Escherichia coli K12 # 1     447       1     447     447     896  100.0  0
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV
IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT
TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA
GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF
GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ
QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG
EQTNYVQGANIAGFVKVADAMLAQGVI
>gi|223713588|gb|ACDM01000010.1| GENE   247    263376  -    263648    108     90 aa, chain + ## HITS:1  COG:no KEGG:B21_01717 NR:ns ## KEGG: B21_01717 # Name: ynjH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      90       1      90      90     178  100.0  6e-44
MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQPCTQCCVYQDQNYSEGA
VIKAEGILLQCQRDDKTLSTNPLVWRRVKP
>gi|223713588|gb|ACDM01000010.1| GENE   248    263614  -    264021    373    135 aa, chain - ## HITS:1  COG:ynjG KEGG:ns NR:ns ## COG: ynjG COG0494 # Protein_GI_number: 16129713 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1     135       1     135     135     242  100.0  1e-64
MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIE
ATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADIP
LLEAFMALRAARPAD
>gi|223713588|gb|ACDM01000010.1| GENE   249    264108  -    264728    515    206 aa, chain + ## HITS:1  COG:ynjF KEGG:ns NR:ns ## COG: ynjF COG0558 # Protein_GI_number: 16129712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli K12 # 1     206       3     208     208     358   99.0  5e-99
MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALPFLALGWYLAALVVILL
NRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFILAAPEQNALAGGWLLFAFI
GTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTETILLFVLGCLFPAWFAWFAWI
FGALCWMTTFTRVWSGYLTLKSLQRQ
>gi|223713588|gb|ACDM01000010.1| GENE   250    264737  -    266044   1441    435 aa, chain - ## HITS:1  COG:ynjE KEGG:ns NR:ns ## COG: ynjE COG2897 # Protein_GI_number: 16129711 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1     435       6     440     440     845   99.0  0
MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNG
PSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGL
THISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKL
YLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVA
QIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQAR
GLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTM
RSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDP
KNPVATGERGPDSSK
>gi|223713588|gb|ACDM01000010.1| GENE   251    266111  -    266764    194    217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1     194       4     201     223 79  30 2e-13
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGE
LWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
SGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
>gi|223713588|gb|ACDM01000010.1| GENE   252    266764  -    268254   1456    496 aa, chain - ## HITS:1  COG:ynjC KEGG:ns NR:ns ## COG: ynjC COG4135 # Protein_GI_number: 16129709 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli K12 # 1     496       1     496     496     704  100.0  0
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV
IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGL
GLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAML
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLL
SYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEAL
INSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGS
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLI
AFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR
>gi|223713588|gb|ACDM01000010.1| GENE   253    268272  -    269438    996    388 aa, chain - ## HITS:1  COG:ynjB KEGG:ns NR:ns ## COG: ynjB COG4134 # Protein_GI_number: 16129708 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli K12 # 1     388       2     389     389     702  100.0  0
MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTH
YAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAET
LPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANP
GTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWR
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHF
VTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQ
DLPPVLAEPHAGWVNALEQEWLHRYGTH
>gi|223713588|gb|ACDM01000010.1| GENE   254    269448  -    269996    518    182 aa, chain - ## HITS:1  COG:ynjA KEGG:ns NR:ns ## COG: ynjA COG2128 # Protein_GI_number: 16129707 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     182       1     182     182     353  100.0  1e-97
MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDP
VVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYA
EAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEK
RS
>gi|223713588|gb|ACDM01000010.1| GENE   255    269996  -    270700    661    234 aa, chain - ## HITS:1  COG:ydjZ KEGG:ns NR:ns ## COG: ydjZ COG0398 # Protein_GI_number: 16129706 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     234       2     235     235     402  100.0  1e-112
MMMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGA
LAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMG
REVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIAT
GLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNA
>gi|223713588|gb|ACDM01000010.1| GENE   256    270718  -    271395    830    225 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_1439 NR:ns ## KEGG: EcSMS35_1439 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     225       1     225     225     437   98.0  1e-121
MLQHYSVSWKKGLAALCLLAVAGLSGCDQQENAAAKVEYDGLSNSQPLRVDANNHTVTML
VQINGRFLTDDTRHGIVFKDGSNGHKSLFMGYATPKAFYEALKEAGGTPGENMTMDNKET
THVTGSKLDISVNWQGAAKAYSFDEVIVDSNGKKLDMRFGGNLTAAEEKKTGCLVCLDSC
PVGIVSNATYTYGAVEKRGEVKFKGNASVLPADNTLATVTFKIAE
>gi|223713588|gb|ACDM01000010.1| GENE   257    271400  -    272110    642    236 aa, chain - ## HITS:1  COG:ydjX KEGG:ns NR:ns ## COG: ydjX COG0398 # Protein_GI_number: 16129704 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     236      17     252     252     407   99.0  1e-113
MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSGFFGYSLYILLFIIATL
LLLPGSILVIAGGIVFGPLLGTLLSLIAAMLASSCSFLLARWLGRDLLLKYVGHSNTFQA
IEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMA
SDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKNEG
>gi|223713588|gb|ACDM01000010.1| GENE   258    272277  -    273083    845    268 aa, chain - ## HITS:1  COG:xthA KEGG:ns NR:ns ## COG: xthA COG0708 # Protein_GI_number: 16129703 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Escherichia coli K12 # 1     268       1     268     268     566  100.0  1e-161
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQK
GHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI
KFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFL
PEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC
CVETGIDYEIRSMEKPSDHAPVWATFRR
>gi|223713588|gb|ACDM01000010.1| GENE   259    273529  -    274749   1421    406 aa, chain + ## HITS:1  COG:cstC KEGG:ns NR:ns ## COG: cstC COG4992 # Protein_GI_number: 16129702 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1     406       1     406     406     824  100.0  0
MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPEL
REALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFA
HDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI
DDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMH
YGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN
TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAK
AGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVSRGSS
>gi|223713588|gb|ACDM01000010.1| GENE   260    274749  -    275780   1044    343 aa, chain + ## HITS:1  COG:ECs2453 KEGG:ns NR:ns ## COG: ECs2453 COG3138 # Protein_GI_number: 15831707 # Func_class: E Amino acid transport and metabolism # Function: Arginine/ornithine N-succinyltransferase beta subunit # Organism: Escherichia coli O157:H7 # 1     343       2     344     344     726  100.0  0
MVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVFV
LEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSE
LCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGK
RFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLEK
EGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHFR
VVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKTA
>gi|223713588|gb|ACDM01000010.1| GENE   261    275777  -    277255   1280    492 aa, chain + ## HITS:1  COG:astD KEGG:ns NR:ns ## COG: astD COG1012 # Protein_GI_number: 16129700 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     492       1     492     492     965  100.0  0
MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSFAE
RHAVVERFAALLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQR
SEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAV
MRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKIL
ALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVA
VSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLLTP
GIIEMTGVAGVPDEEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLL
EARAGIVNWNKPLTGAASTAPFGGIGASGNHRPSAWYAADYCAWPMASLESDSLTLPATL
NPGLDFSDEVVR
>gi|223713588|gb|ACDM01000010.1| GENE   262    277252  -    278595   1226    447 aa, chain + ## HITS:1  COG:astB KEGG:ns NR:ns ## COG: astB COG3724 # Protein_GI_number: 16129699 # Func_class: E Amino acid transport and metabolism # Function: Succinylarginine dihydrolase # Organism: Escherichia coli K12 # 1     447       1     447     447     890  100.0  0
MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQA
VIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADT
LDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHN
RLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPD
VIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTV
STYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANG
GGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREG
REALDVLSQLLNLGSVYPFQREGGGNG
>gi|223713588|gb|ACDM01000010.1| GENE   263    278588  -    279556    777    322 aa, chain + ## HITS:1  COG:ydjS KEGG:ns NR:ns ## COG: ydjS COG2988 # Protein_GI_number: 16129698 # Func_class: E Amino acid transport and metabolism # Function: Succinylglutamate desuccinylase # Organism: Escherichia coli K12 # 1     322       1     322     322     663  100.0  0
MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQGALVISAGIHGNETAPV
EMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDMNRMFGGRWQLFAESGETC
RARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGVLPQRDIPWDEKFLTWLGAAG
LEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFGQNDLRQFAVTASAIAALLSGES
VGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFMPFEKGTLLAQDGEERFTVTHDVEY
VLFPNPLVALGLRAGLMLEKIS
>gi|223713588|gb|ACDM01000010.1| GENE   264    279886  -    280371    624    161 aa, chain + ## HITS:1  COG:spy KEGG:ns NR:ns ## COG: spy COG3678 # Protein_GI_number: 16129697 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli K12 # 1     161       1     161     161     229  100.0  1e-60
MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKFGPHQDMMFKDLNLTDA
QKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKVKAEAQIAKMEEQRKANMLAHM
ETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE
>gi|223713588|gb|ACDM01000010.1| GENE   265    280574  -    281149    348    191 aa, chain + ## HITS:1  COG:ydjR KEGG:ns NR:ns ## COG: ydjR COG3758 # Protein_GI_number: 16129696 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     191      22     212     212     401  100.0  1e-112
MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEFSLFPGMERIVT
LLEGGEMLLESADRFNHTLKPFQPFAFAADQVVKAKLTAGQMSMDFNIMTRLDVCKAKVR
IAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFDGRHTLRLLQPQGKLLFSEIN
WLAGHSPDQVQ
>gi|223713588|gb|ACDM01000010.1| GENE   266    281109  -    281858    529    249 aa, chain - ## HITS:1  COG:ydjQ KEGG:ns NR:ns ## COG: ydjQ COG0322 # Protein_GI_number: 16129695 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Escherichia coli K12 # 1     249      47     295     295     499  100.0  1e-141
MPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLF
NKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLC
YGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVAL
KEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITEL
DPANDQRAS
>gi|223713588|gb|ACDM01000010.1| GENE   267    282226  -    283053    903    275 aa, chain - ## HITS:1  COG:nadE KEGG:ns NR:ns ## COG: nadE COG0171 # Protein_GI_number: 16129694 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Escherichia coli K12 # 1     275       1     275     275     553  100.0  1e-157
MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLC
QMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQ
ALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITGFFTKYGDGGTD
INPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDRPSLPDEVALGVTYDNIDDYLEG
KNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK
>gi|223713588|gb|ACDM01000010.1| GENE   268    283255  -    283593    417    112 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_1315 NR:ns ## KEGG: ECIAI39_1315 # Name: osmE # Def: DNA-binding transcriptional activator OsmE # Organism: E.coli_IAI39 # Pathway: not_defined # 1     112       1     112     112     207  100.0  9e-53
MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS
MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK
>gi|223713588|gb|ACDM01000010.1| GENE   269    283892  -    284212    411    106 aa, chain + ## HITS:1  COG:ECs2444 KEGG:ns NR:ns ## COG: ECs2444 COG1440 # Protein_GI_number: 15831698 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Escherichia coli O157:H7 # 1      93       1      93     106     172   98.0  1e-43
MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEVFPETLAGEKGQNADVVLLGPQI
AYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN
>gi|223713588|gb|ACDM01000010.1| GENE   270    284297  -    285655   1656    452 aa, chain + ## HITS:1  COG:celB KEGG:ns NR:ns ## COG: celB COG1455 # Protein_GI_number: 16129691 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Escherichia coli K12 # 1     452       1     452     452     792  100.0  0
MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMFVLINNVFLSFGEGSF
FYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFIGMALAEERKVDALAAGLL
SVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVAEMFTFIVRRNWVIKLPDSVP
ASVSRSFSALIPGFIILSVMGIIAWALNTWGTNFHQIIMDTISTPLASLGSVVGWAYVIF
VPLLWFFGIHGALALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPMLDS
FIFLGGSGATLGLILAIFIASRRADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIP
FVLVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIAT
LIYLPFVVVANKAQNAIDKEESEEDIANALKF
>gi|223713588|gb|ACDM01000010.1| GENE   271    285706  -    286056    594    116 aa, chain + ## HITS:1  COG:ECs2442 KEGG:ns NR:ns ## COG: ECs2442 COG1447 # Protein_GI_number: 15831696 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Escherichia coli O157:H7 # 1     116       1     116     116     173  100.0  9e-44
MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMA
LNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQDHLMTSMLARELITELIELHEKLKA
>gi|223713588|gb|ACDM01000010.1| GENE   272    286067  -    286906    769    279 aa, chain + ## HITS:1  COG:celD KEGG:ns NR:ns ## COG: celD COG2207 # Protein_GI_number: 16129689 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     279       2     280     280     519  100.0  1e-147
MQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYFQEING
KRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYLPLLPYCFVASQVYRT
NNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRLRHYREEQVIDDVPQWLKSTVEKM
HDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSV
TDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ
>gi|223713588|gb|ACDM01000010.1| GENE   273    287011  -    288363   1645    450 aa, chain + ## HITS:1  COG:celF KEGG:ns NR:ns ## COG: celF COG1486 # Protein_GI_number: 16129688 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1     450       1     450     450     939   99.0  0
MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKAKLDIIFDLCQRMID
NAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLF
KGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGIVTEAVYRHTGFKRFIGVCNIPIGMKM
FIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLVNGKSRFAELLDGVASGQLKASSVKNIFD
LPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNP
ELKVKPKELEQRGGAYYSDAACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCK
LGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASNAALSGEFNDVLLALNLSPLVHSDRD
AELLAREMILAHEKWLPNFADCIAELKKAH
>gi|223713588|gb|ACDM01000010.1| GENE   274    288376  -    289125    643    249 aa, chain + ## HITS:1  COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     249       1     249     249     514  100.0  1e-146
MERLLIVNADDFGLSKGQNYGIIEACRNGIVTSTTALVNGQAIDHAVQLSRDEPSLAIGM
HFVLTMGKPLTAMPGLTRDGVLGKWIWQLAEEDALPLEEITQELVSQYLRFIELFGRKPT
HLDSHHHVHMFPQIFPIVARFAAEQGIALRADRQMAFDLPVNLRTTQGFSSAFYGEEISE
SLFLQVLDDAGHRGDRSLEVMCHPAFIDNTIRQSAYCFPRLTELDVLTSASLKGAIAQRG
YRLGSYRDV
>gi|223713588|gb|ACDM01000010.1| GENE   275    289383  -    291644   2196    753 aa, chain - ## HITS:1  COG:katE KEGG:ns NR:ns ## COG: katE COG0753 # Protein_GI_number: 16129686 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Escherichia coli K12 # 1     753       1     753     753    1516   99.0  0
MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDT
RNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHE
RIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVR
DIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFW
DYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKA
SLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLI
PEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQI
SRLGGPNFHEIPINRPTCPYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRG
GFESYQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIR
ERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKG
RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSL
TVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKVADQGEEGIVE
ADSADGSFMDELLTLMAAHRVWSRIPKIDKIPA
>gi|223713588|gb|ACDM01000010.1| GENE   276    291827  -    292090    172     87 aa, chain + ## HITS:1  COG:no KEGG:SSON_1427 NR:ns ## KEGG: SSON_1427 # Name: not_defined # Def: cell division modulator # Organism: S.sonnei # Pathway: not_defined # 1      87       1      87      87     155  100.0  6e-37
MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESF
LRSPAFTVPESAQRWANQIRQEGEVTE
>gi|223713588|gb|ACDM01000010.1| GENE   277    292895  -    293182    110     95 aa, chain + ## HITS:1  COG:no KEGG:JW1719 NR:ns ## KEGG: JW1719 # Name: ydjO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      95     177     271     271     192  100.0  4e-48
MLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDI
FFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA
>gi|223713588|gb|ACDM01000010.1| GENE   278    293186  -    294577   1806    463 aa, chain - ## HITS:1  COG:ydjN KEGG:ns NR:ns ## COG: ydjN COG1823 # Protein_GI_number: 16129683 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Escherichia coli K12 # 1     463       1     463     463     752   99.0  0
MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFGLALHTIYGSDSQVLKD
SVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAA
LVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSDLSVPQLVLSFIPKNPFADLT
GANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAAIDTLQSWVMKLVRLVMQLTPYG
VLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFAVHGILLGINGVSPLKYFRKVWPVL
TFAFTSRSSAASIPLNVEAQMRRLGVPESIASFAASFGATIGQNGCAGLYPAMLAVMVAP
TVGINPLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPL
IDMGRTALNVSGSMTAGTLTSQWLKQTDKAILDSEDDAELAHH
>gi|223713588|gb|ACDM01000010.1| GENE   279    294710  -    295300    309    196 aa, chain - ## HITS:1  COG:ydjM KEGG:ns NR:ns ## COG: ydjM COG1988 # Protein_GI_number: 16129682 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     196       5     200     200     380  100.0  1e-106
MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKW
ISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLT
PAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQMIN
TLQIQFHRLIKHQVEY
>gi|223713588|gb|ACDM01000010.1| GENE   280    295463  -    296131    744    222 aa, chain - ## HITS:1  COG:yniC KEGG:ns NR:ns ## COG: yniC COG0637 # Protein_GI_number: 16129681 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1     222       1     222     222     408  100.0  1e-114
MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDL
WYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLH
MLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIA
SKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG
>gi|223713588|gb|ACDM01000010.1| GENE   281    296278  -    296814    490    178 aa, chain + ## HITS:1  COG:no KEGG:JW1715 NR:ns ## KEGG: JW1715 # Name: yniB # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     178       1     178     178     338  100.0  4e-92
MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENKEGINAVMLDFTHVMIDM
MQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQDSGARMSRQARFLREGVE
DQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYILPVICIAAGYVFFSLLGFI
>gi|223713588|gb|ACDM01000010.1| GENE   282    296855  -    297715    837    286 aa, chain - ## HITS:1  COG:yniA KEGG:ns NR:ns ## COG: yniA COG3001 # Protein_GI_number: 16129679 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Escherichia coli K12 # 1     286       1     286     286     575  100.0  1e-164
MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFVKCDERELLPGFTAEAD
QLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQP
QFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVEHIQQRL
ASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLAMLPLHTEQPPQIYDGYQ
SVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIAQQSLDRLLAA
>gi|223713588|gb|ACDM01000010.1| GENE   283    297821  -    298111    293     96 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_2442 NR:ns ## KEGG: ECH74115_2442 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      96       1      96      96     158  100.0  4e-38
MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELGTNTFGLISTQ
SEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK
>gi|223713588|gb|ACDM01000010.1| GENE   284    298212  -    299141   1010    309 aa, chain - ## HITS:1  COG:pfkB KEGG:ns NR:ns ## COG: pfkB COG1105 # Protein_GI_number: 16129677 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Escherichia coli K12 # 1     309       1     309     309     570  100.0  1e-162
MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFP
AGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQ
LEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGN
IELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQ
VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDT
QKIYAYLSR
>gi|223713588|gb|ACDM01000010.1| GENE   285    299428  -    300186    625    252 aa, chain + ## HITS:1  COG:ydiY KEGG:ns NR:ns ## COG: ydiY COG3137 # Protein_GI_number: 16129676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative salt-induced outer membrane protein # Organism: Escherichia coli K12 # 1     252       1     252     252     463  100.0  1e-130
MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKS
SSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASW
LTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAY
AWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHT
DRRTTLSLGYSM
>gi|223713588|gb|ACDM01000010.1| GENE   286    300239  -    300451    154     70 aa, chain - ## HITS:1  COG:no KEGG:SFV_1500 NR:ns ## KEGG: SFV_1500 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1      70       3      72      72     134  100.0  9e-31
MCTTPPDGCNNKKSLDACPFCYTPLSRTRDMQDTGMPTKRFDKKHWKMVVVLLAICGAML
LLRWAAMIWG
>gi|223713588|gb|ACDM01000010.1| GENE   287    300518  -    301162    312    214 aa, chain - ## HITS:1  COG:b1721m KEGG:ns NR:ns ## COG: b1721m COG0666 # Protein_GI_number: 16132225 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1     214     419     632     632     409  100.0  1e-114
MQEIQSLVDNHIIHEDNLVKLLQTKSANETPGLYISMLYGFDEIIDIFLNALTTPIAQEL
LNKKLVMSILAMKIHDGEPGLYAAMENNHPLCVTRFLSKINGIAFKYKLSKANIMDLLKG
ATAQGTPALYIAMSKGNEDVVLSYISTLGAFAKKHSFSQHQLFTLLAAKNHDNMSAVHIA
IHHKHYKTVETYYAAINAISQSLSFSADEIKTYL
>gi|223713588|gb|ACDM01000010.1| GENE   288    301944  -    302417    136    157 aa, chain - ## HITS:1  COG:b1721m KEGG:ns NR:ns ## COG: b1721m COG0666 # Protein_GI_number: 16132225 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1     151       1     151     632     288   97.0  2e-78
MSQNDIIIRTHYKSPHRLHIDSDIPTPSSEPINQFARQLITLLDTSDLSSMLSYCVTQEF
TANCRKISQNCYSTALFTINFATSPIHTENILITLHYKKEIISLLLETTPIKANHLRSIL
DYIEQEELTAEDRNHCMKLSKKIHREKNYTPNSKSQW
>gi|223713588|gb|ACDM01000010.1| GENE   289    303001  -    304869   2020    622 aa, chain + ## HITS:1  COG:thrS KEGG:ns NR:ns ## COG: thrS COG0441 # Protein_GI_number: 16129675 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     622      21     642     642    1311  100.0  0
MDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG
HAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVS
WHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK
TAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEA
PGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT
SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFT
QDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEAD
LAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGE
DNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQ
KLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMD
VNEVIEKLQQEIRSRSLKQLEE
>gi|223713588|gb|ACDM01000010.1| GENE   290    304936  -    305415    665    159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 1     158       2     159     159 260  81 4e-68
QEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSS
KEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIG
MEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ
>gi|223713588|gb|ACDM01000010.1| GENE   291    305497  -    305709    358     70 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35 [Shigella flexneri 5 str. 8401] # 1      70       1      70      70 142  98 2e-32
MEVIKMPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDL
GLVIACLPYA
>gi|223713588|gb|ACDM01000010.1| GENE   292    305762  -    306118    578    118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15802128|ref|NP_288150.1| 50S ribosomal protein L20 [Escherichia coli O157:H7 EDL933] # 1     118       1     118     118 227  100 5e-58
MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQL
WIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA
>gi|223713588|gb|ACDM01000010.1| GENE   293    306569  -    307552   1310    327 aa, chain + ## HITS:1  COG:pheS KEGG:ns NR:ns ## COG: pheS COG0016 # Protein_GI_number: 16129670 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Escherichia coli K12 # 1     327       1     327     327     668  100.0  0
MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI
NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF
GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKA
QQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQ
IRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGME
RLTMLRYGVTDLRSFFENDLRFLKQFK
>gi|223713588|gb|ACDM01000010.1| GENE   294    307567  -    309954   2924    795 aa, chain + ## HITS:1  COG:ECs2420_2 KEGG:ns NR:ns ## COG: ECs2420_2 COG0072 # Protein_GI_number: 15831674 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Escherichia coli O157:H7 # 140     795       1     656     656    1294   99.0  0
MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD
KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLC
SFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVA
VLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMKEKLRR
CGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKLNAD
TLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRY
ERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLIGHH
IADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQ
ASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVE
MSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNR
YEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIG
FVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPA
ADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAK
CVEALKERFQASLRD
>gi|223713588|gb|ACDM01000010.1| GENE   295    309959  -    310258    318     99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG] # 3      92       4      93      96 127  66 8e-28
MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR
PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE
>gi|223713588|gb|ACDM01000010.1| GENE   296    310359  -    311339    984    326 aa, chain + ## HITS:1  COG:btuC KEGG:ns NR:ns ## COG: btuC COG4139 # Protein_GI_number: 16129667 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, permease component # Organism: Escherichia coli K12 # 1     326       1     326     326     473  100.0  1e-133
MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRT
LAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLC
AIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMM
GGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGEISARQLGLPLWFWRNVLVAATG
WMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLALAA
AELPIGVVTATLGAPVFIWLLLKAGR
>gi|223713588|gb|ACDM01000010.1| GENE   297    311402  -    311953    642    183 aa, chain + ## HITS:1  COG:btuE KEGG:ns NR:ns ## COG: btuE COG0386 # Protein_GI_number: 16129666 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Escherichia coli K12 # 1     183       1     183     183     377  100.0  1e-105
MQDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQYEQLENIQKAWVDRGFMV
LGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVA
PEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPEDPIVMESIKLA
LAK
>gi|223713588|gb|ACDM01000010.1| GENE   298    311965  -    312702    764    245 aa, chain + ## HITS:1  COG:ECs2416 KEGG:ns NR:ns ## COG: ECs2416 COG4138 # Protein_GI_number: 15831670 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1     245       5     249     249     455   99.0  1e-128
MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE
AWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST
NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGL
AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRM
LISTI
>gi|223713588|gb|ACDM01000010.1| GENE   299    312780  -    313244    273    154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 40     154      65     174     175 109  45 1e-22
MRFCLILITALLLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV
DCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYD
TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
>gi|223713588|gb|ACDM01000010.1| GENE   300    313491  -    314204    144    237 aa, chain + ## HITS:1  COG:ydiV KEGG:ns NR:ns ## COG: ydiV COG2200 # Protein_GI_number: 16129663 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 1     237       1     237     237     483  100.0  1e-137
MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIPTSRVIAQLTEEQHWQL
FSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAGELLKYPFIELLINENYPH
LNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRVMLDKSFIQQQITHRSFEP
FIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHALQGCLWPAVPINQITTLVQR
>gi|223713588|gb|ACDM01000010.1| GENE   301    314267  -    315703   1080    478 aa, chain + ## HITS:1  COG:ydiU KEGG:ns NR:ns ## COG: ydiU COG0397 # Protein_GI_number: 16129662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     478       1     478     478     962  100.0  0
MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGEAL
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETAEPGAMLMRVAPSHLRFGH
FEHFYYRRESEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT
LSPFVAVDALNEALDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDY
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPA
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
>gi|223713588|gb|ACDM01000010.1| GENE   302    315707  -    315898    181     63 aa, chain - ## HITS:1  COG:ECs2412 KEGG:ns NR:ns ## COG: ECs2412 COG4256 # Protein_GI_number: 15831666 # Func_class: P Inorganic ion transport and metabolism # Function: Hemin uptake protein # Organism: Escherichia coli O157:H7 # 1      63       1      63      63     107  100.0  6e-24
MRYTDSRKLTPETDANHKTASPQPIRRISSQTLLGPDGKLIIDHDGQEYLLRKTQAGKLL
LTK
>gi|223713588|gb|ACDM01000010.1| GENE   303    316030  -    317076    849    348 aa, chain - ## HITS:1  COG:aroH KEGG:ns NR:ns ## COG: aroH COG0722 # Protein_GI_number: 16129660 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli K12 # 1     348       1     348     348     719   99.0  0
MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEKILNGEDKRLLVIIGPC
SIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVGWKGLISDPDLNGSYRVNH
GLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSC
PVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMTIYQTSGSPYGHIIMRGGKKPNY
HADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRRQLEVCEDICQQIRNGSTAIAGIMA
ESFLREGTQKIVGSQPLTYGQSITDPCLGWEDTERLVEKLASAVDTRF
>gi|223713588|gb|ACDM01000010.1| GENE   304    317233  -    318066    755    277 aa, chain - ## HITS:1  COG:ECs2410 KEGG:ns NR:ns ## COG: ECs2410 COG1806 # Protein_GI_number: 15831664 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     277       1     277     277     552  100.0  1e-157
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIY
HQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNP
NNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAAN
YPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEV
EALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
>gi|223713588|gb|ACDM01000010.1| GENE   305    318399  -    320777   2744    792 aa, chain + ## HITS:1  COG:ppsA KEGG:ns NR:ns ## COG: ppsA COG0574 # Protein_GI_number: 16129658 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Escherichia coli K12 # 1     792       1     792     792    1608   99.0  0
MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTAEAFNQFL
DQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQPELENAIREAYAQLSADDE
NASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAVKHVFASLFNDRAISYRVHQG
YDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDE
FYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHGKQVKIEDVPQEQRDIFSLTNEEVQ
ELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPETVRSRGQVMERYTLHSQGKIIA
EGRAIGHRIGAGPVKVIHDISEMNRIEPGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTC
HAAIIARELGIPAVVGCGDATERMKDGENVTVSCAEGDTGYVYAELLEFSVKSSSVETMP
DLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFDDQEPQLQNE
IREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDE
ENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEE
LARQGLKRGENGLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVS
ELFDERNDAVKALLSMAIRAAKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTV
VQTWLSLAELKK
>gi|223713588|gb|ACDM01000010.1| GENE   306    320834  -    322480   1210    548 aa, chain - ## HITS:1  COG:ydiD KEGG:ns NR:ns ## COG: ydiD COG0318 # Protein_GI_number: 16129657 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 1     548      19     566     566    1123  100.0  0
MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAA
SCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNK
CQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADNTSLT
TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH
ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPA
DLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGY
AAAGVEIKVVDDARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCR
MDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYV
VLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLT
QDVCEEIE
>gi|223713588|gb|ACDM01000010.1| GENE   307    322537  -    322830    319     97 aa, chain - ## HITS:1  COG:ydiT KEGG:ns NR:ns ## COG: ydiT COG2440 # Protein_GI_number: 16129656 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli K12 # 1      97       1      97      97     206  100.0  9e-54
MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHF
DSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
>gi|223713588|gb|ACDM01000010.1| GENE   308    322827  -    324116   1192    429 aa, chain - ## HITS:1  COG:ydiS KEGG:ns NR:ns ## COG: ydiS COG0644 # Protein_GI_number: 16129655 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1     429       1     429     429     832  100.0  0
MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP
GFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ
AGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH
YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIV
GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRD
MQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK
DGIKGATAL
>gi|223713588|gb|ACDM01000010.1| GENE   309    324172  -    325110   1040    312 aa, chain - ## HITS:1  COG:ydiR KEGG:ns NR:ns ## COG: ydiR COG2025 # Protein_GI_number: 16129654 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1     312       1     312     312     620  100.0  1e-177
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDA
LQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI
CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRE
RRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY
KVVPALISQLSR
>gi|223713588|gb|ACDM01000010.1| GENE   310    325130  -    325894    787    254 aa, chain - ## HITS:1  COG:ydiQ KEGG:ns NR:ns ## COG: ydiQ COG2086 # Protein_GI_number: 16129653 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli K12 # 1     254       1     254     254     467  100.0  1e-131
MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAASQLATDDDEIAALTVG
GSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLIFGEGSG
DLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLEDDVEVIELSVPAVLCVTSDI
NVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAELVGIRVPPQTERKHIIIDNDSPE
AIAELAEHLKKALN
>gi|223713588|gb|ACDM01000010.1| GENE   311    326210  -    327121    581    303 aa, chain + ## HITS:1  COG:ydiP KEGG:ns NR:ns ## COG: ydiP COG2207 # Protein_GI_number: 16129652 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     303       1     303     303     622  100.0  1e-178
MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDS
SLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAA
GQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDV
LIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWS
LTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVS
LVG
>gi|223713588|gb|ACDM01000010.1| GENE   312    327164  -    328315   1453    383 aa, chain - ## HITS:1  COG:ECs2402 KEGG:ns NR:ns ## COG: ECs2402 COG1960 # Protein_GI_number: 15831656 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1     383      19     401     401     801  100.0  0
MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEF
GGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAY
ALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKKA
FTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEM
ERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLK
VAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERI
GGGTDEIMIYVAGRQILKDYQNK
>gi|223713588|gb|ACDM01000010.1| GENE   313    328329  -    329924   1589    531 aa, chain - ## HITS:1  COG:ydiF KEGG:ns NR:ns ## COG: ydiF COG4670 # Protein_GI_number: 16129650 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Escherichia coli K12 # 1     531       1     531     531    1069  100.0  0
MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTP
RNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGV
LTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIA
PDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSV
RIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMR
KGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMT
SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTA
GSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGL
HLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH
>gi|223713588|gb|ACDM01000010.1| GENE   314    330067  -    330825    845    252 aa, chain - ## HITS:1  COG:aroD KEGG:ns NR:ns ## COG: aroD COG0710 # Protein_GI_number: 16129649 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Escherichia coli K12 # 1     252       1     252     252     449  100.0  1e-126
MKTVTVKDLVIGTGAPKIIVSLMAKDIASVKSEALAYREADFDILEWRVDHYADLSNVES
VMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTG
DDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLRKMQSFDADIPKIALMPQSTSD
VLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEVFGSAATFGAVKKASAPGQISVN
DLRTVLTILHQA
>gi|223713588|gb|ACDM01000010.1| GENE   315    330856  -    331722    873    288 aa, chain - ## HITS:1  COG:ydiB KEGG:ns NR:ns ## COG: ydiB COG0169 # Protein_GI_number: 16129648 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli K12 # 1     288       1     288     288     581  100.0  1e-166
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALK
MRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGF
DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT
VTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK
LLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVMGFGA
>gi|223713588|gb|ACDM01000010.1| GENE   316    331734  -    332999   1003    421 aa, chain - ## HITS:1  COG:ydiN KEGG:ns NR:ns ## COG: ydiN COG0477 # Protein_GI_number: 16129647 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     421       3     423     423     726  100.0  0
MSQNKAFSTPFILAVLCIYFSYFLHGISVITLAQNMSSLAEKFSTDNAGIAYLISGIGLG
RLISILFFGVISDKFGRRAVILMAVIMYLLFFFGIPACPNLTLAYGLAVCVGIANSALDT
GGYPALMECFPKASGSAVILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLI
TLMLLKSKFPSQLVDASVTNELPQMNSKPLVWLEGVSSVLFGVAAFSTFYVIVVWMPKYA
MAFAGMSEAEALKTISYYSMGSLVCVFIFAALLKKMVRPIWANVFNSALATITAAIIYLY
PSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFFPKSKAKVTSIYMMMGGLANFVIPLITG
YLSNIGLQYIIVLDFTFALLALITAIIVFIRYYRVFIIPENDVRFGERKFCTRLNTIKHR
G
>gi|223713588|gb|ACDM01000010.1| GENE   317    333226  -    334440    867    404 aa, chain - ## HITS:1  COG:ydiM KEGG:ns NR:ns ## COG: ydiM COG0477 # Protein_GI_number: 16129646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     404       1     404     404     720  100.0  0
MKNPYFPTALGLYFNYLVHGMGVLLMSLNMASLETLWQTNAAGVSIVISSLGIGRLSVLL
FAGLLSDRFGRRPFIMLGMCCYMAFFFGILQTNNIIIAYVFGFLAGMANSFLDAGTYPSL
MEAFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLYR
CTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGYISMATFYLVSQWLAQYGQFVAG
MSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLLMLYTFISFIALFTVCLHPTFYV
VIIFAFVIGFTSAGGVVQIGLTLMAERFPYAKGKATGIYYSAGSIATFTIPLITAHLSQR
SIADIMWFDTAIAAIGFLLALFIGLRSRKKTRHHSLKENVAPGG
>gi|223713588|gb|ACDM01000010.1| GENE   318    334540  -    334896    175    118 aa, chain - ## HITS:1  COG:no KEGG:JW1679 NR:ns ## KEGG: JW1679 # Name: ydiL # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     118       1     118     118     242  100.0  3e-63
MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK
HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC
>gi|223713588|gb|ACDM01000010.1| GENE   319    335325  -    336437   1351    370 aa, chain - ## HITS:1  COG:ECs2395 KEGG:ns NR:ns ## COG: ECs2395 COG0628 # Protein_GI_number: 15831649 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1     370       1     370     370     584   99.0  1e-167
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMF
GRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIG
AKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWR
GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLI
RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILE
ELGEIEKPNK
>gi|223713588|gb|ACDM01000010.1| GENE   320    336826  -    339882   2539   1018 aa, chain + ## HITS:1  COG:ydiJ_1 KEGG:ns NR:ns ## COG: ydiJ_1 COG0277 # Protein_GI_number: 16129643 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1     542       1     542     542    1130  100.0  0
MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTDNSIYQLLPDAVVFPRS
TADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVDMSRHMNRIIEINPEEGWV
RVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGV
RAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVYQRCRQQRQLIIDNFPKLNRFLT
GYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARLDITRLPKVRRLVNVKYDSFDSALR
NAPFMVEARALSVETVDSKVLNLAREDIVWHSVSELITDVPDQEMLGLNIVEFAGDDEAL
IDERVNALCARLDELIASHQAGVIGWQVCRELAGVERIYAMRKKAVGLLGNAKGAAKPIP
FAEDTCVPPEHLADYIAEFRALLDSHGLSYGMFGHVDAGVLHVRPALDMCDPQQEILMKQ
ISDDVVALTAKYGGLLWGEHGKGFRAEYSPAFFGEELFAELRKVKAAFDPHNRLNPGKIC
PPEGLDAPMMKVDAVKRGTFDRQIPIAVRQQWRGAMECNGNGLCFNFDARSPMCPSMKIT
QNRIHSPKGRATLVREWLRLLADRGVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEY
DFSHEVKEAMSGCLACKACSTQCPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYA
PLMARAPKTFNFFINQPLVRKLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESL
NAEQKARTVLVVQDPFTSYYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRF
AKTAKKTADFLNRMAKLGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASAL
ESQPVATVSGESWYFFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHE
AKNHENSLGIYELSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK
>gi|223713588|gb|ACDM01000010.1| GENE   321    339879  -    340289    296    136 aa, chain + ## HITS:1  COG:ydiI KEGG:ns NR:ns ## COG: ydiI COG2050 # Protein_GI_number: 16129642 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1     136       1     136     136     276  100.0  9e-75
MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVV
LAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFD
EKGRLCCSSRLTTAIL
>gi|223713588|gb|ACDM01000010.1| GENE   322    340389  -    340577    312     62 aa, chain + ## HITS:1  COG:no KEGG:SbBS512_E1886 NR:ns ## KEGG: SbBS512_E1886 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1      62      28      89      89     109  100.0  2e-23
MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTLSSAELKEEIYFAWRLG
VH
>gi|223713588|gb|ACDM01000010.1| GENE   323    341125  -    341493    508    122 aa, chain + ## HITS:1  COG:ydiC KEGG:ns NR:ns ## COG: ydiC COG0316 # Protein_GI_number: 16129640 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     122       1     122     122     252  100.0  9e-68
MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSV
SEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF
GV
>gi|223713588|gb|ACDM01000010.1| GENE   324    341463  -    342989   1439    508 aa, chain + ## HITS:1  COG:ynhE KEGG:ns NR:ns ## COG: ynhE COG0719 # Protein_GI_number: 16129639 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli K12 # 1     508       1     508     508    1056  100.0  0
MWLWRKLWGIGGTMSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVRAIS
AKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDTCASEP
GAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLAEQGIIFC
SFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRI
NAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKNAEVKYSTVQNW
FPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCILRGDNSIGEFYSVA
LTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDS
MLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFC
KDVFSELPLEFAVEAQKLLAISLEHSVG
>gi|223713588|gb|ACDM01000010.1| GENE   325    342999  -    343745    753    248 aa, chain + ## HITS:1  COG:ynhD KEGG:ns NR:ns ## COG: ynhD COG0396 # Protein_GI_number: 16129638 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Escherichia coli K12 # 1     248       1     248     248     489  100.0  1e-138
MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV
EFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF
QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA
LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG
YGWLTEQQ
>gi|223713588|gb|ACDM01000010.1| GENE   326    343720  -    344991   1114    423 aa, chain + ## HITS:1  COG:ynhC KEGG:ns NR:ns ## COG: ynhC COG0719 # Protein_GI_number: 16129637 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli K12 # 1     423       1     423     423     806  100.0  0
MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINS
QFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQGLPDA
IQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEG
AEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDAT
AFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQL
HKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSH
GATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPG
GAR
>gi|223713588|gb|ACDM01000010.1| GENE   327    344988  -    346208   1321    406 aa, chain + ## HITS:1  COG:csdB KEGG:ns NR:ns ## COG: csdB COG0520 # Protein_GI_number: 16129636 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli K12 # 1     406       1     406     406     828  100.0  0
MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHT
LSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ
MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTE
NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE
ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN
NIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRT
GHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG
>gi|223713588|gb|ACDM01000010.1| GENE   328    346221  -    346637    607    138 aa, chain + ## HITS:1  COG:ynhA KEGG:ns NR:ns ## COG: ynhA COG2166 # Protein_GI_number: 16129635 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Escherichia coli K12 # 1     126       1     126     138     246   99.0  8e-66
MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQDCQSQVWIVMR
QNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRS
QGLEAMIRAIRAKAAALS
>gi|223713588|gb|ACDM01000010.1| GENE   329    346786  -    347790    743    334 aa, chain + ## HITS:1  COG:ynhG KEGG:ns NR:ns ## COG: ynhG COG1376 # Protein_GI_number: 16129634 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     334       1     334     334     608  100.0  1e-174
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDT
AAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVY
PIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYA
LRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYS
VEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPV
SVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
>gi|223713588|gb|ACDM01000010.1| GENE   330    347854  -    348090    322     78 aa, chain - ## HITS:1  COG:ECs2384 KEGG:ns NR:ns ## COG: ECs2384 COG4238 # Protein_GI_number: 15831638 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein lipoprotein # Organism: Escherichia coli O157:H7 # 1      78       1      78      78     105  100.0  2e-23
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD
DAARANQRLDNMATKYRK
>gi|223713588|gb|ACDM01000010.1| GENE   331    348401  -    349813   1516    470 aa, chain - ## HITS:1  COG:ECs2383 KEGG:ns NR:ns ## COG: ECs2383 COG0469 # Protein_GI_number: 15831637 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Escherichia coli O157:H7 # 1     470       1     470     470     884  100.0  0
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT
AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG
NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF
GCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGI
MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN
AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCR
GAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLV
KEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>gi|223713588|gb|ACDM01000010.1| GENE   332    350370  -    350579    257     69 aa, chain + ## HITS:1  COG:no KEGG:LF82_2868 NR:ns ## KEGG: LF82_2868 # Name: ydhZ # Def: uncharacterized protein YdhZ # Organism: E.coli_LF82 # Pathway: not_defined # 1      69       1      69      69     109  100.0  3e-23
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM
ETVINALVK
>gi|223713588|gb|ACDM01000010.1| GENE   333    351034  -    351660    434    208 aa, chain + ## HITS:1  COG:ECs2381 KEGG:ns NR:ns ## COG: ECs2381 COG0437 # Protein_GI_number: 15831635 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1     208       1     208     208     368  100.0  1e-102
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
SKCVLCGECANACPTGALKIIEWKDITV
>gi|223713588|gb|ACDM01000010.1| GENE   334    351681  -    353783   1855    700 aa, chain + ## HITS:1  COG:ydhV KEGG:ns NR:ns ## COG: ydhV COG2414 # Protein_GI_number: 16129629 # Func_class: C Energy production and conversion # Function: Aldehyde:ferredoxin oxidoreductase # Organism: Escherichia coli K12 # 1     700       1     700     700    1496  100.0  0
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVF
ATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSP
VWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSR
NHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTP
QSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKY
TVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGR
VIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNF
IKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQ
VGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIK
YAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDL
AAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLT
MFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>gi|223713588|gb|ACDM01000010.1| GENE   335    353796  -    354434    438    212 aa, chain + ## HITS:1  COG:no KEGG:B21_01631 NR:ns ## KEGG: B21_01631 # Name: ydhW # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     212       4     215     215     375   99.0  1e-103
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAV
FLSPPYLVAEEELSALLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQ
DICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESS
TAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>gi|223713588|gb|ACDM01000010.1| GENE   336    354498  -    355166    231    222 aa, chain + ## HITS:1  COG:ydhX KEGG:ns NR:ns ## COG: ydhX COG0437 # Protein_GI_number: 16129627 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1     222      18     239     239     457  100.0  1e-129
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN
HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
EDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>gi|223713588|gb|ACDM01000010.1| GENE   337    355163  -    355948    621    261 aa, chain + ## HITS:1  COG:ydhU KEGG:ns NR:ns ## COG: ydhU COG4117 # Protein_GI_number: 16129626 # Func_class: C Energy production and conversion # Function: Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) # Organism: Escherichia coli K12 # 1     261       1     261     261     484  100.0  1e-136
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSAT
DHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLA
CWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQ
QVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYL
CTTGRTPHETFKSMVDGYHRH
>gi|223713588|gb|ACDM01000010.1| GENE   338    355952  -    356764    278    270 aa, chain + ## HITS:1  COG:no KEGG:B21_01628 NR:ns ## KEGG: B21_01628 # Name: ydhT # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     270       1     270     270     517  100.0  1e-145
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLA
DENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGY
SVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVAS
NGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGER
VRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>gi|223713588|gb|ACDM01000010.1| GENE   339    356776  -    358380    817    534 aa, chain - ## HITS:1  COG:ydhS KEGG:ns NR:ns ## COG: ydhS COG4529 # Protein_GI_number: 16129624 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     534       1     534     534    1087  100.0  0
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASI
EIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQ
KFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSP
WSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITL
LSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWS
QRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAV
QEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEI
NESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQ
PEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>gi|223713588|gb|ACDM01000010.1| GENE   340    358506  -    358811    323    101 aa, chain - ## HITS:1  COG:no KEGG:SSON_1489 NR:ns ## KEGG: SSON_1489 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     101       1     101     101     191  100.0  8e-48
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEK
SALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>gi|223713588|gb|ACDM01000010.1| GENE   341    359384  -    360640    878    418 aa, chain + ## HITS:1  COG:ydhQ KEGG:ns NR:ns ## COG: ydhQ COG3468 # Protein_GI_number: 16129622 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1     418       1     418     418     701   99.0  0
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA
KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLE
NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVF
MLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAEL
QQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEG
AICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>gi|223713588|gb|ACDM01000010.1| GENE   342    360681  -    362054   1533    457 aa, chain - ## HITS:1  COG:ECs2372 KEGG:ns NR:ns ## COG: ECs2372 COG0534 # Protein_GI_number: 15831626 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli O157:H7 # 1     457       1     457     457     799   99.0  0
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILF
GHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENID
PALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIY
GHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ
LGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVG
YRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLL
AAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAG
FWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>gi|223713588|gb|ACDM01000010.1| GENE   343    362269  -    362910    753    213 aa, chain + ## HITS:1  COG:ribC KEGG:ns NR:ns ## COG: ribC COG0307 # Protein_GI_number: 16129620 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Escherichia coli K12 # 1     213       1     213     213     426  100.0  1e-119
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS
FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ
IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV
NIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>gi|223713588|gb|ACDM01000010.1| GENE   344    362950  -    364098    975    382 aa, chain - ## HITS:1  COG:cfa KEGG:ns NR:ns ## COG: cfa COG2230 # Protein_GI_number: 16129619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Escherichia coli K12 # 1     382       1     382     382     812  100.0  0
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGE
SYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHY
DLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGG
LAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEH
VGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQS
SEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRA
RDIQLWQVVFSRGVENGLRVAR
>gi|223713588|gb|ACDM01000010.1| GENE   345    364389  -    365600   1184    403 aa, chain - ## HITS:1  COG:ECs2369 KEGG:ns NR:ns ## COG: ECs2369 COG0477 # Protein_GI_number: 15831623 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     403       1     403     403     706   99.0  0
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLL
WGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVT
DYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWL
KPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVI
GLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEIL
IPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTP
LLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>gi|223713588|gb|ACDM01000010.1| GENE   346    365713  -    366645    593    310 aa, chain + ## HITS:1  COG:ECs2368 KEGG:ns NR:ns ## COG: ECs2368 COG0583 # Protein_GI_number: 15831622 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     310       1     310     310     622  100.0  1e-178
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTA
AGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDD
VELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLAL
MDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMV
PTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR
EPEETPATGD
>gi|223713588|gb|ACDM01000010.1| GENE   347    366642  -    367667   1124    341 aa, chain - ## HITS:1  COG:ECs2367 KEGG:ns NR:ns ## COG: ECs2367 COG1609 # Protein_GI_number: 15831621 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     341       1     341     341     700  100.0  0
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK
SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL
VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE
IGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP
TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET
AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>gi|223713588|gb|ACDM01000010.1| GENE   348    367966  -    368055    105     29 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>gi|223713588|gb|ACDM01000010.1| GENE   349    368221  -    369390   1289    389 aa, chain + ## HITS:1  COG:ydhP KEGG:ns NR:ns ## COG: ydhP COG2814 # Protein_GI_number: 16129615 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1     389       1     389     389     571  100.0  1e-163
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLM
TLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAAS
VVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSL
PKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVT
AMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVW
GAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPV
MGAIVAGLALLLVFMSARKQPETVCVANS
>gi|223713588|gb|ACDM01000010.1| GENE   350    369625  -    370206    461    193 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1     193       1     199     201 182  44 2e-44
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS
EGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFG
SGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWA
LVNWEFIAKNLAA
>gi|223713588|gb|ACDM01000010.1| GENE   351    370334  -    371149    518    271 aa, chain - ## HITS:1  COG:ydhO KEGG:ns NR:ns ## COG: ydhO COG0791 # Protein_GI_number: 16129613 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Escherichia coli K12 # 1     271       1     271     271     422  100.0  1e-118
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTA
KKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVK
VKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDL
VKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRT
GQEIQITSLSEDYWQRHYVGARRVMTPKTLR
>gi|223713588|gb|ACDM01000010.1| GENE   352    371483  -    371830    525    115 aa, chain + ## HITS:1  COG:ECs2363 KEGG:ns NR:ns ## COG: ECs2363 COG0278 # Protein_GI_number: 15831617 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin-related protein # Organism: Escherichia coli O157:H7 # 1     115       1     115     115     225  100.0  1e-59
MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA
ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSEEPDAE
>gi|223713588|gb|ACDM01000010.1| GENE   353    371881  -    376497   3601   1538 aa, chain - ## HITS:1  COG:lhr KEGG:ns NR:ns ## COG: lhr COG1201 # Protein_GI_number: 16129611 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Escherichia coli K12 # 1    1538       1    1538    1538    2924  100.0  0
MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLA
AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG
ETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDE
VHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPA
MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTN
SRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS
KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV
GGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVD
EWYSRVRRAAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQL
LAVTSGGTIPDRGMYSVLLPEGEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQI
TRDQVIVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEEN
TIANIQGLIEEQRNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWAVAIAGR
IHALWGADASVVASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARF
RECAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPA
LERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSEL
LRNLLGQVDPGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRH
TGSSEEVASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRV
SYPLRDLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEV
FRRLRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVM
RVIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVALH
LQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSALQE
ALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPN
LAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTLCRSMEDS
GRIMRGRFVEGLGGAQFAERLTIDRLRDLATQATQTRHYTPVALSANDPANVWGNLLPWP
AHPATLVPTRRAGALVVVSGGKLLLYLAQGGKKMLVWQEKEELLAPEVFHALTTALRREP
RLRFTLTEVNDLPVRQTPMFTLLREAGFSSSPQGLDWG
>gi|223713588|gb|ACDM01000010.1| GENE   354    376590  -    376982    335    130 aa, chain - ## HITS:1  COG:rnt KEGG:ns NR:ns ## COG: rnt COG0847 # Protein_GI_number: 16129610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1     130      86     215     215     263  100.0  6e-71
DRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHP
FATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLG
GWPLSAAEEV
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:41:15 2011
 Seq name: gi|223713587|gb|ACDM01000011.1| Escherichia sp. 4_1_40B cont1.11, whole genome shotgun sequence 
 Length of sequence - 19695 bp
 Number of predicted genes - 24, with homology - 24
 Number of transcription units - 12, operones - 6 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   7/0.000   -    CDS          3 -       249    252  ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
                               -    Prom       277 -       336    3.9 
                               -    Term       308 -       343    5.2 
     2     1 Op  2   4/0.600   -    CDS        352 -       759    216  ## PROTEIN SUPPORTED gi|15900839|ref|NP_345443.1| lactoylglutathione lyase
     3     1 Op  3   6/0.000   -    CDS        840 -      1937   1190  ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family
     4     1 Op  4     .       -    CDS       1974 -      2573    552  ## COG1309 Transcriptional regulator
                               -    Prom      2784 -      2843    2.2 
                               +    Prom      2882 -      2941    4.1 
     5     2 Op  1   3/0.600   +    CDS       2964 -      3860   1021  ## COG4989 Predicted oxidoreductase
     6     2 Op  2     .       +    CDS       3926 -      4462    718  ## COG2032 Cu/Zn superoxide dismutase
                               +    Term      4535 -      4570    2.4 
                               -    Term      4288 -      4325    2.2 
     7     3 Op  1   6/0.000   -    CDS       4463 -      6475   1373  ## COG1289 Predicted membrane protein
     8     3 Op  2     .       -    CDS       6475 -      7332    559  ## COG1566 Multidrug resistance efflux pump
     9     3 Op  3     .       -    CDS       7335 -      7571    113  ## ECUMN_1934 conserved hypothetical protein; putative inner membrane protein
                               -    Prom      7715 -      7774    9.9 
                               +    Prom      7559 -      7618    6.8 
    10     4 Tu  1     .       +    CDS       7766 -      8206    345  ## COG1846 Transcriptional regulators
                               +    Term      8216 -      8260    4.3 
                               -    Term      8201 -      8244    5.5 
    11     5 Tu  1     .       -    CDS       8253 -      8720    570  ## COG3133 Outer membrane lipoprotein
                               -    Prom      8819 -      8878    6.9 
                               +    Prom      8865 -      8924    3.2 
    12     6 Tu  1     .       +    CDS       8994 -     10103    848  ## COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases
    13     7 Op  1   3/0.600   +    CDS      10207 -     10530    293  ## COG3895 Predicted periplasmic protein
    14     7 Op  2   5/0.200   +    CDS      10589 -     11245    669  ## COG0259 Pyridoxamine-phosphate oxidase
                               +    Prom     11250 -     11309    3.2 
    15     8 Op  1   5/0.200   +    CDS      11374 -     12648    833  ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32
                               +    Term     12664 -     12701    7.8 
    16     8 Op  2     .       +    CDS      12710 -     13570    886  ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase
                               +    Term     13580 -     13622    5.0 
                               -    Term     13564 -     13609    5.9 
    17     9 Tu  1     .       -    CDS      13614 -     14219    664  ## COG0625 Glutathione S-transferase
                               -    Prom     14240 -     14299    4.2 
                               -    Term     14267 -     14301    5.2 
    18    10 Tu  1     .       -    CDS      14325 -     15827   1556  ## COG3104 Dipeptide/tripeptide permease
                               -    Prom     15847 -     15906    5.9 
    19    11 Tu  1     .       -    CDS      16110 -     16310     61  ## ECBD_2010 hypothetical protein
                               -    Prom     16373 -     16432    2.6 
    20    12 Op  1  10/0.000   -    CDS      16438 -     17073    640  ## COG0177 Predicted EndoIII-related endonuclease
    21    12 Op  2  13/0.000   -    CDS      17073 -     17768    769  ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE
    22    12 Op  3  12/0.000   -    CDS      17772 -     18392    547  ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG
    23    12 Op  4  12/0.000   -    CDS      18396 -     19454    822  ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
    24    12 Op  5     .       -    CDS      19455 -     19694    251  ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Predicted protein(s)
>gi|223713587|gb|ACDM01000011.1| GENE     1         3  -       249    252     82 aa, chain - ## HITS:1  COG:rnt KEGG:ns NR:ns ## COG: rnt COG0847 # Protein_GI_number: 16129610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1      82       1      82     215     173  100.0  5e-44
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHF
HVEPFVGANLQPEALAFNGIDP
>gi|223713587|gb|ACDM01000011.1| GENE     2       352  -       759    216    135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900839|ref|NP_345443.1| lactoylglutathione lyase [Streptococcus pneumoniae TIGR4] # 2     127       4     126     126 87  38 5e-17
MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYN
WGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYK
IELIEEKDAGRGLGN
>gi|223713587|gb|ACDM01000011.1| GENE     3       840  -      1937   1190    365 aa, chain - ## HITS:1  COG:nemA KEGG:ns NR:ns ## COG: nemA COG1902 # Protein_GI_number: 16129608 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1     365       1     365     365     702  100.0  0
MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEAT
QISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQLWHTGRISHASLQPGGQAP
VAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGIVNDFRQAIANAREAGFDLVE
LHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIEEWGADRIGIRVSPIGT
FQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIG
AGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAESFYGGGAEGYT
DYPTL
>gi|223713587|gb|ACDM01000011.1| GENE     4      1974  -      2573    552    199 aa, chain - ## HITS:1  COG:ydhM KEGG:ns NR:ns ## COG: ydhM COG1309 # Protein_GI_number: 16129607 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     199       1     199     199     391  100.0  1e-109
MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML
ERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLSE
DMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSF
EPLENALAHVKNIIATPAV
>gi|223713587|gb|ACDM01000011.1| GENE     5      2964  -      3860   1021    298 aa, chain + ## HITS:1  COG:ydhF KEGG:ns NR:ns ## COG: ydhF COG4989 # Protein_GI_number: 16129605 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Escherichia coli K12 # 1     298       1     298     298     610   99.0  1e-174
MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQC
EAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATD
HLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQ
VEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAG
SIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP
>gi|223713587|gb|ACDM01000011.1| GENE     6      3926  -      4462    718    178 aa, chain + ## HITS:1  COG:ECs2355 KEGG:ns NR:ns ## COG: ECs2355 COG2032 # Protein_GI_number: 15831609 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Escherichia coli O157:H7 # 6     178       1     173     173     301   99.0  5e-82
MNGGPMKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPD
LKALPPGEHGFHIHAKGSCQPATKDGKASAAESASGHLDPQNTGKHEGPEGAGHLGDLPA
LVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK
>gi|223713587|gb|ACDM01000011.1| GENE     7      4463  -      6475   1373    670 aa, chain - ## HITS:1  COG:ydhK KEGG:ns NR:ns ## COG: ydhK COG1289 # Protein_GI_number: 16129603 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     670       1     670     670    1222  100.0  0
MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT
VGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAY
AFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALL
TALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNAR
LNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPL
RPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAM
WSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLS
LFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTN
PPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTL
SESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRD
NCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLE
QAPPQGTLAS
>gi|223713587|gb|ACDM01000011.1| GENE     8      6475  -      7332    559    285 aa, chain - ## HITS:1  COG:ydhJ KEGG:ns NR:ns ## COG: ydhJ COG1566 # Protein_GI_number: 16129602 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     285      15     299     299     551  100.0  1e-157
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNI
KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE
LDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF
ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS
LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
>gi|223713587|gb|ACDM01000011.1| GENE     9      7335  -      7571    113     78 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_1934 NR:ns ## KEGG: ECUMN_1934 # Name: ydhI # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      78       1      78      78     105  100.0  4e-22
MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLLRGWIYAGDIWHPLLMD
LSLFAICVCLALAILIAW
>gi|223713587|gb|ACDM01000011.1| GENE    10      7766  -      8206    345    146 aa, chain + ## HITS:1  COG:ECs2351 KEGG:ns NR:ns ## COG: ECs2351 COG1846 # Protein_GI_number: 15831605 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     146       1     146     146     241  100.0  4e-64
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGI
EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEAVINKTRAEILHGI
SAEELEQLITLIAKLEHNIIELQAKG
>gi|223713587|gb|ACDM01000011.1| GENE    11      8253  -      8720    570    155 aa, chain - ## HITS:1  COG:slyB KEGG:ns NR:ns ## COG: slyB COG3133 # Protein_GI_number: 16129599 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein # Organism: Escherichia coli K12 # 1     155       1     155     155     212   99.0  2e-55
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN
VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
>gi|223713587|gb|ACDM01000011.1| GENE    12      8994  -     10103    848    369 aa, chain + ## HITS:1  COG:ydhH KEGG:ns NR:ns ## COG: ydhH COG2377 # Protein_GI_number: 16129598 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted molecular chaperone distantly related to HSP70-fold metalloproteases # Organism: Escherichia coli K12 # 1     369       1     369     369     712   99.0  0
MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSLKQAVLDICQGQQLTLS
QFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVWHEPTGVAPHTLQIGDNNQ
IVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPTERRMVLNIGGIANLSLLIPG
QPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGKVILPLLQNMLSDPYFSQPAPKS
TGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAVTISEQVLLSGGCERLMVCGGGSRN
PLLMARLAALLPGTEVTTTDAVGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASQETV
LGAIFPANP
>gi|223713587|gb|ACDM01000011.1| GENE    13     10207  -     10530    293    107 aa, chain + ## HITS:1  COG:STM1447 KEGG:ns NR:ns ## COG: STM1447 COG3895 # Protein_GI_number: 16764795 # Func_class: R General function prediction only # Function: Predicted periplasmic protein # Organism: Salmonella typhimurium LT2 # 1     107       3     109     109     189   84.0  7e-49
MKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLL
HLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
>gi|223713587|gb|ACDM01000011.1| GENE    14     10589  -     11245    669    218 aa, chain + ## HITS:1  COG:pdxH KEGG:ns NR:ns ## COG: pdxH COG0259 # Protein_GI_number: 16129596 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxamine-phosphate oxidase # Organism: Escherichia coli K12 # 1     218       1     218     218     432  100.0  1e-121
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDE
HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAER
LSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGG
FRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
>gi|223713587|gb|ACDM01000011.1| GENE    15     11374  -     12648    833    424 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4     421       7     414     418 325  42 1e-88
MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKR
FQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENS
AIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQG
YDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTE
GGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQ
YVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSALSEADFEQLAQDGVPMVEMEKGADLM
QALVDSELQPSRGQARKTIASNAITINGEKQSDPEYFFKEEDRLFGRFTLLRRGKKNYCL
ICWK
>gi|223713587|gb|ACDM01000011.1| GENE    16     12710  -     13570    886    286 aa, chain + ## HITS:1  COG:pdxY KEGG:ns NR:ns ## COG: pdxY COG2240 # Protein_GI_number: 16129594 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Escherichia coli K12 # 1     286       2     287     287     568  100.0  1e-162
MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLT
EIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKG
CIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLV
KHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQ
EALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL
>gi|223713587|gb|ACDM01000011.1| GENE    17     13614  -     14219    664    201 aa, chain - ## HITS:1  COG:ECs2344 KEGG:ns NR:ns ## COG: ECs2344 COG0625 # Protein_GI_number: 15831598 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1     201       1     201     201     389  100.0  1e-108
MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDG
TLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEE
YKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLEGLEHIAA
FMQRMAERPEVQDALSAEGLK
>gi|223713587|gb|ACDM01000011.1| GENE    18     14325  -     15827   1556    500 aa, chain - ## HITS:1  COG:ydgR KEGG:ns NR:ns ## COG: ydgR COG3104 # Protein_GI_number: 16129592 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1     487       1     487     500     879  100.0  0
MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI
TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA
AIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVNIGSFFSMIATPWLAAKYGWS
VAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIIGVVALIAIATWLLH
NQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLN
FFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSPILAAIYNKMGDTLPMPTKFAIGMVMC
SGAFLILPLGAKFASDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM
GSWFLTTAGANLIGGYVAGMMAVPDNVTDPLMSLEVYGRVFLQIGVATAVIAVLMLLTAP
KLHRMTQDDAADKAAKAAVA
>gi|223713587|gb|ACDM01000011.1| GENE    19     16110  -     16310     61     66 aa, chain - ## HITS:1  COG:no KEGG:ECBD_2010 NR:ns ## KEGG: ECBD_2010 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      66       1      66      66     103  100.0  2e-21
MQVNCFFNSEIFYSFVIKITMLSQCKNIARIRLKSFKFTHATNIDLQNITLAIFQKLDYL
TSKNAK
>gi|223713587|gb|ACDM01000011.1| GENE    20     16438  -     17073    640    211 aa, chain - ## HITS:1  COG:nth KEGG:ns NR:ns ## COG: nth COG0177 # Protein_GI_number: 16129591 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Escherichia coli K12 # 1     211       1     211     211     426  100.0  1e-119
MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT
PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI
LHGRYTCIARKPRCGSCIIEDLCEYKEKVDI
>gi|223713587|gb|ACDM01000011.1| GENE    21     17073  -     17768    769    231 aa, chain - ## HITS:1  COG:ECs2341 KEGG:ns NR:ns ## COG: ECs2341 COG4660 # Protein_GI_number: 15831595 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Escherichia coli O157:H7 # 1     231       1     231     231     395   99.0  1e-110
MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLR
HWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAA
KKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTD
SPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV
>gi|223713587|gb|ACDM01000011.1| GENE    22     17772  -     18392    547    206 aa, chain - ## HITS:1  COG:ydgP KEGG:ns NR:ns ## COG: ydgP COG4659 # Protein_GI_number: 16129589 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Escherichia coli K12 # 1     206       1     206     206     393  100.0  1e-109
MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALA
QSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTR
VTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAV
VNAVKRAGLYAQTLPAQLSQLPACGE
>gi|223713587|gb|ACDM01000011.1| GENE    23     18396  -     19454    822    352 aa, chain - ## HITS:1  COG:ydgO KEGG:ns NR:ns ## COG: ydgO COG4658 # Protein_GI_number: 16129588 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Escherichia coli K12 # 1     352       1     352     352     633  100.0  0
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEAL
VLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP
FNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGI
DGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
RWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGR
LIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
>gi|223713587|gb|ACDM01000011.1| GENE    24     19455  -     19694    251     79 aa, chain - ## HITS:1  COG:Z2636 KEGG:ns NR:ns ## COG: Z2636 COG4656 # Protein_GI_number: 15802043 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Escherichia coli O157:H7 EDL933 # 1      79     662     740     740      62   92.0  2e-10
AKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAA
AIARAQAKKAAQQKVVNED
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:41:37 2011
 Seq name: gi|223713586|gb|ACDM01000012.1| Escherichia sp. 4_1_40B cont1.12, whole genome shotgun sequence 
 Length of sequence - 56395 bp
 Number of predicted genes - 53, with homology - 51
 Number of transcription units - 35, operones - 11 average op.length -  2.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1  10/0.091   -    CDS          3 -      1791   1377  ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
     2     1 Op  2  12/0.091   -    CDS       1784 -      2362    451  ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
     3     1 Op  3     .       -    CDS       2362 -      2943    608  ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA
     4     1 Op  4     .       -    CDS       3020 -      3460    348  ## UTI89_C1816 hypothetical protein
                               -    Prom      3484 -      3543    4.1 
     5     2 Tu  1     .       -    CDS       3546 -      3761    247  ## G2583_2020 OriC-binding nucleoid-associated protein
                               -    Prom      3897 -      3956    3.7 
                               -    Term      3972 -      4019    6.9 
     6     3 Tu  1     .       -    CDS       4034 -      4189     77  ## EC55989_1792 beta-lactam resistance membrane protein
                               +    Prom      4289 -      4348    4.5 
     7     4 Tu  1     .       +    CDS       4402 -      5442    972  ## COG0673 Predicted dehydrogenases and related proteins
                               +    Term      5447 -      5484    7.1 
                               -    Term      5433 -      5470    7.1 
     8     5 Tu  1     .       -    CDS       5476 -      6477   1167  ## COG1816 Adenosine deaminase
                               -    Prom      6507 -      6566    6.5 
                               -    Term      6528 -      6578    7.1 
     9     6 Op  1   3/0.727   -    CDS       6581 -      7753   1025  ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
    10     6 Op  2     .       -    CDS       7763 -      9355   1613  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               -    Prom      9450 -      9509    5.3 
                               +    Prom      9421 -      9480    7.4 
    11     7 Tu  1     .       +    CDS       9530 -     10558    784  ## COG1609 Transcriptional regulators
                               +    Prom     10591 -     10650    2.0 
    12     8 Tu  1     .       +    CDS      10670 -     11437    244  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
                               +    Prom     11577 -     11636    4.9 
    13     9 Tu  1     .       +    CDS      11661 -     12248    556  ## COG1309 Transcriptional regulator
                               +    Term     12265 -     12302    3.0 
                               +    Prom     12476 -     12535    3.6 
    14    10 Op  1   1/0.727   +    CDS      12639 -     13919   1164  ## COG3250 Beta-galactosidase/beta-glucuronidase
    15    10 Op  2     .       +    CDS      13816 -     14781    922  ## COG2211 Na+/melibiose symporter and related transporters
    16    10 Op  3     .       +    CDS      14820 -     16085    943  ## JW1607 predicted outer membrane porin protein
                               +    Term     16093 -     16128    5.7 
                               -    Term     16262 -     16297    4.0 
    17    11 Tu  1     .       -    CDS      16311 -     17819   1637  ## COG5339 Uncharacterized protein conserved in bacteria
                               -    Prom     17859 -     17918    1.9 
                               -    Term     17829 -     17862    4.1 
    18    12 Tu  1     .       -    CDS      17920 -     19095   1405  ## COG1482 Phosphomannose isomerase
                               -    Prom     19138 -     19197    4.2 
                               +    Prom     19165 -     19224    5.2 
    19    13 Tu  1   4/0.455   +    CDS      19294 -     20940    486  ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase
                               +    Term     20944 -     20977    3.6 
                               +    Prom     20946 -     21005    2.2 
    20    14 Tu  1     .       +    CDS      21083 -     22486   1593  ## COG0114 Fumarase
                               +    Term     22498 -     22553    0.2 
    21    15 Op  1     .       -    CDS      22483 -     23412    649  ## JW1602 inhibitor of replication at Ter, DNA-binding protein
    22    15 Op  2  40/0.000   -    CDS      23488 -     24789   1209  ## COG0642 Signal transduction histidine kinase
    23    15 Op  3     .       -    CDS      24793 -     25512    593  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               -    Prom     25710 -     25769    4.1 
                               +    Prom     25552 -     25611    5.1 
    24    16 Tu  1     .       +    CDS      25641 -     25976    355  ## COG3136 Uncharacterized membrane protein required for alginate biosynthesis
    25    17 Op  1   7/0.091   -    CDS      25973 -     26695    768  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
    26    17 Op  2     .       -    CDS      26732 -     28114   1367  ## COG0531 Amino acid transporters
                               -    Prom     28192 -     28251    4.6 
                               -    Term     28251 -     28279    1.3 
    27    18 Tu  1     .       -    CDS      28300 -     29244   1065  ## EC55989_1769 hypothetical protein
                               -    Prom     29363 -     29422    5.0 
                               +    Prom     29623 -     29682    4.5 
    28    19 Op  1  17/0.000   +    CDS      29768 -     31300   1532  ## COG3288 NAD/NADP transhydrogenase alpha subunit
    29    19 Op  2     .       +    CDS      31311 -     32699   1432  ## COG1282 NAD/NADP transhydrogenase beta subunit
                               +    Term     32703 -     32738    7.4 
    30    20 Tu  1     .       -    CDS      32724 -     33758   1152  ## COG0628 Predicted permease
                               -    Prom     33906 -     33965    5.1 
                               +    Prom     33907 -     33966    4.5 
    31    21 Op  1  12/0.091   +    CDS      34170 -     34535    455  ## COG2076 Membrane transporters of cations and cationic drugs
    32    21 Op  2     .       +    CDS      34522 -     34851    453  ## COG2076 Membrane transporters of cations and cationic drugs
                               +    Term     34858 -     34893    6.4 
                               -    Term     34846 -     34881    6.4 
    33    22 Tu  1     .       -    CDS      34890 -     35711    519  ## COG3591 V8-like Glu-specific endopeptidase
                               -    Prom     35755 -     35814    3.4 
    34    23 Tu  1     .       -    CDS      35987 -     36295    284  ## 
                               -    Prom     36432 -     36491    6.5 
                               +    Prom     36479 -     36538    3.6 
    35    24 Tu  1     .       +    CDS      36566 -     36670     58  ## 
                               +    Term     36679 -     36726   11.2 
                               -    Term     36670 -     36711    7.3 
    36    25 Tu  1     .       -    CDS      36719 -     37972    975  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     38040 -     38099    5.3 
                               +    Prom     37996 -     38055    4.8 
    37    26 Op  1   5/0.091   +    CDS      38079 -     38972    204  ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35
                               +    Prom     39010 -     39069    1.6 
    38    26 Op  2   3/0.727   +    CDS      39107 -     40327    274  ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33
                               +    Term     40369 -     40433    6.5 
                               +    Prom     40373 -     40432    4.7 
    39    27 Tu  1     .       +    CDS      40452 -     41147    814  ## COG0132 Dethiobiotin synthetase
                               +    Term     41191 -     41229    7.6 
    40    28 Tu  1     .       -    CDS      41100 -     42392   1212  ## COG0038 Chloride channel protein EriC
                               -    Prom     42482 -     42541    4.2 
    41    29 Op  1   4/0.455   -    CDS      42551 -     43165    574  ## COG3381 Uncharacterized component of anaerobic dehydrogenases
                               -    Term     43170 -     43200    3.0 
    42    29 Op  2   9/0.091   -    CDS      43208 -     44062    655  ## COG3302 DMSO reductase anchor subunit
    43    29 Op  3  16/0.000   -    CDS      44064 -     44681    514  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
    44    29 Op  4   5/0.091   -    CDS      44692 -     47115   1688  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    45    29 Op  5     .       -    CDS      47176 -     49602   1969  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Prom     49628 -     49687    5.4 
                               -    Term     49749 -     49784    3.7 
    46    30 Tu  1     .       -    CDS      49801 -     50106    238  ## ECSE_1707 hypothetical protein
                               -    Prom     50128 -     50187    2.3 
                               +    Prom     50110 -     50169    3.4 
    47    31 Tu  1     .       +    CDS      50301 -     50924    562  ## ECBD_2061 hypothetical protein
                               +    Term     50935 -     50974   -0.7 
    48    32 Op  1     .       -    CDS      50927 -     51487    484  ## PROTEIN SUPPORTED gi|116490772|ref|YP_810316.1| acetyltransferase
    49    32 Op  2     .       -    CDS      51522 -     51863    305  ## B21_01542 hypothetical protein
                               -    Prom     51963 -     52022    4.6 
                               +    Prom     51815 -     51874    4.6 
    50    33 Tu  1     .       +    CDS      51998 -     52324    261  ## COG1742 Uncharacterized conserved protein
                               +    Prom     52333 -     52392    4.0 
    51    34 Op  1   2/0.727   +    CDS      52530 -     53744   1382  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
    52    34 Op  2     .       +    CDS      53756 -     54775   1025  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
                               +    Term     54990 -     55030   -0.0 
    53    35 Tu  1     .       -    CDS      54963 -     56243    302  ## COG0582 Integrase
Predicted protein(s)
>gi|223713586|gb|ACDM01000012.1| GENE     1         3  -      1791   1377    596 aa, chain - ## HITS:1  COG:ydgN KEGG:ns NR:ns ## COG: ydgN COG4656 # Protein_GI_number: 16129587 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Escherichia coli K12 # 1     588       1     588     740    1067  100.0  0
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
RDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIA
>gi|223713586|gb|ACDM01000012.1| GENE     2      1784  -      2362    451    192 aa, chain - ## HITS:1  COG:ydgM KEGG:ns NR:ns ## COG: ydgM COG2878 # Protein_GI_number: 16129586 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Escherichia coli K12 # 1     192       1     192     192     365  100.0  1e-101
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPY
AEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGC
TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNT
IPVRIIPVEHHA
>gi|223713586|gb|ACDM01000012.1| GENE     3      2362  -      2943    608    193 aa, chain - ## HITS:1  COG:ECs2336 KEGG:ns NR:ns ## COG: ECs2336 COG4657 # Protein_GI_number: 15831590 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Escherichia coli O157:H7 # 1     193       1     193     193     285  100.0  3e-77
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLID
TWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVA
LLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLM
SLAFMGFSGLVKL
>gi|223713586|gb|ACDM01000012.1| GENE     4      3020  -      3460    348    146 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C1816 NR:ns ## KEGG: UTI89_C1816 # Name: ydgK # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     146       9     154     154     202   99.0  2e-51
MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGV
SFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLL
FTLLATALIVPYFKRSSRVKATFVNP
>gi|223713586|gb|ACDM01000012.1| GENE     5      3546  -      3761    247     71 aa, chain - ## HITS:1  COG:no KEGG:G2583_2020 NR:ns ## KEGG: G2583_2020 # Name: cnu # Def: OriC-binding nucleoid-associated protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      71       1      71      71     133  100.0  3e-30
MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
QVPKSVWHYVQ
>gi|223713586|gb|ACDM01000012.1| GENE     6      4034  -      4189     77     51 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1792 NR:ns ## KEGG: EC55989_1792 # Name: blr # Def: beta-lactam resistance membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1      51      16      66      66      92  100.0  6e-18
MDQSREMWAVMNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK
>gi|223713586|gb|ACDM01000012.1| GENE     7      4402  -      5442    972    346 aa, chain + ## HITS:1  COG:ECs2332 KEGG:ns NR:ns ## COG: ECs2332 COG0673 # Protein_GI_number: 15831586 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1     346      14     359     359     681   99.0  0
MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLF
NDPNIDLIVIPTPNDTHLPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSV
FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH
LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYP
AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA
>gi|223713586|gb|ACDM01000012.1| GENE     8      5476  -      6477   1167    333 aa, chain - ## HITS:1  COG:add KEGG:ns NR:ns ## COG: add COG1816 # Protein_GI_number: 16129581 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Escherichia coli K12 # 1     333       1     333     333     655  100.0  0
MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFL
TKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVI
DGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLF
LSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQI
GIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGL
SREQIRQAQINGLEMAFLSAEEKRALREKVAAK
>gi|223713586|gb|ACDM01000012.1| GENE     9      6581  -      7753   1025    390 aa, chain - ## HITS:1  COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 1     390       1     390     390     822  100.0  0
MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAPCIIEALNQRLMHGVFG
YSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPA
YDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT
CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPAL
TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLT
YIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEG
RGFVRLNAGCPRSKLEKGVAGLINAIRAVR
>gi|223713586|gb|ACDM01000012.1| GENE    10      7763  -      9355   1613    530 aa, chain - ## HITS:1  COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1     450       1     450     450     847  100.0  0
MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQ
AIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKG
ILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGT
RFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH
HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLG
GLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLT
GLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAIT
RFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK
DMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA
>gi|223713586|gb|ACDM01000012.1| GENE    11      9530  -     10558    784    342 aa, chain + ## HITS:1  COG:malI KEGG:ns NR:ns ## COG: malI COG1609 # Protein_GI_number: 16129578 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     342       1     342     342     645  100.0  0
MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGFVRNRQASALR
GGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQG
VDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHLIRN
GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH
NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV
TWASTPARELGITLADRMMQKITHEETHSRNLIIPARLIAAK
>gi|223713586|gb|ACDM01000012.1| GENE    12     10670  -     11437    244    255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 12     248       4     238     242 98  29 7e-20
MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG
QAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVF
SFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK
NIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVS
GQILTVSGGGVQELN
>gi|223713586|gb|ACDM01000012.1| GENE    13     11661  -     12248    556    195 aa, chain + ## HITS:1  COG:ECs2326 KEGG:ns NR:ns ## COG: ECs2326 COG1309 # Protein_GI_number: 15831580 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     195       2     196     196     359  100.0  2e-99
MDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQA
IILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVAAM
LKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYGVLADIEAEDLAREASF
AQGLRAMIGGILTAS
>gi|223713586|gb|ACDM01000012.1| GENE    14     12639  -     13919   1164    426 aa, chain + ## HITS:1  COG:uidA KEGG:ns NR:ns ## COG: uidA COG3250 # Protein_GI_number: 16129575 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1     388       1     388     603     818   99.0  0
MLRPVETPTREIKKLDGLWAFSLNRENCGIDQRWWESALQESRAIAVPGSFNDQFADADI
RNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTP
YVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTP
NTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPH
LWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDAD
LRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLS
LGIGFEAGNKPKELYSEEAVNGETQQAHSCYRDDPTTTIPRPSGRGSWDCHFIDLCLPGI
SDRTEH
>gi|223713586|gb|ACDM01000012.1| GENE    15     13816  -     14781    922    321 aa, chain + ## HITS:1  COG:uidB KEGG:ns NR:ns ## COG: uidB COG2211 # Protein_GI_number: 16129574 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1     321     137     457     457     595   99.0  1e-170
MTQQPQSRARLGAARGIATSLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVL
YFICFKSTRENVVRIVAQPSLNISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVR
YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV
WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA
IGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKE
IVVEIDNRKKVQQQLISDITN
>gi|223713586|gb|ACDM01000012.1| GENE    16     14820  -     16085    943    421 aa, chain + ## HITS:1  COG:no KEGG:JW1607 NR:ns ## KEGG: JW1607 # Name: uidC # Def: predicted outer membrane porin protein # Organism: E.coli_J # Pathway: not_defined # 1     421       1     421     421     824  100.0  0
MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRADKPSAGAGRDIYAWVQ
GGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGDKSFGFALGAVKIKPSENS
LLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALGYWALTPNIDLWGMWRSRVFL
WTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDTSRYSLGASVQKDVSNQIQSILE
KSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETALVSGQLTWNAPWGSVFGSGGYLRH
AMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVNYRLTPQFTLTFAPIVTRGYESSKRDV
RIEGTGILGGMNYRVSEGPLQGMNFFLAADKGREKRDGSTLGDRLNYWDVKMSIQYDFML
K
>gi|223713586|gb|ACDM01000012.1| GENE    17     16311  -     17819   1637    502 aa, chain - ## HITS:1  COG:ydgA KEGG:ns NR:ns ## COG: ydgA COG5339 # Protein_GI_number: 16129572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     502       1     502     502     919   99.0  0
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNY
HRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQT
TLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQL
NADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
KMTISVEGKELALLEGMEISCKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
QIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAP
LSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQV
AKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLE
DFVGMFAMPALNVPAVPAIPQQ
>gi|223713586|gb|ACDM01000012.1| GENE    18     17920  -     19095   1405    391 aa, chain - ## HITS:1  COG:manA KEGG:ns NR:ns ## COG: manA COG1482 # Protein_GI_number: 16129571 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Escherichia coli K12 # 1     391       1     391     391     751  100.0  0
MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKSSSRVQNAAGDIVSLRD
VIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMD
AAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQQPDAERL
SELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIRLISEFYPEDSGLFSPLLLNVVK
LNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEAKPANQ
LLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETTISQQSAAILFCVEGDATLWKGSQQLQ
LKPGESAFIAANESPVTVKGHGRLARVYNKL
>gi|223713586|gb|ACDM01000012.1| GENE    19     19294  -     20940    486    548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 76     531      38     482     508 191  33 6e-48
MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVALEALTLLARQAFHDASF
MLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQR
VWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKF
LCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAET
NLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKELLIEAQNLGLGAQFGGKYFAHDIRV
IRLPRHGASCPVGMGVSCSADRNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVR
VDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIY
YAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGF
YLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIQL
TQCTRCVK
>gi|223713586|gb|ACDM01000012.1| GENE    20     21083  -     22486   1593    467 aa, chain + ## HITS:1  COG:fumC KEGG:ns NR:ns ## COG: fumC COG0114 # Protein_GI_number: 16129569 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Escherichia coli K12 # 1     467       1     467     467     902  100.0  0
MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE
DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG
VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD
IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP
EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS
GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV
FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK
AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSMKAGR
>gi|223713586|gb|ACDM01000012.1| GENE    21     22483  -     23412    649    309 aa, chain - ## HITS:1  COG:no KEGG:JW1602 NR:ns ## KEGG: JW1602 # Name: tus # Def: inhibitor of replication at Ter, DNA-binding protein # Organism: E.coli_J # Pathway: not_defined # 1     309       1     309     309     586  100.0  1e-166
MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ
HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL
KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN
LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA
RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII
PRLHLYVAD
>gi|223713586|gb|ACDM01000012.1| GENE    22     23488  -     24789   1209    433 aa, chain - ## HITS:1  COG:rstB KEGG:ns NR:ns ## COG: rstB COG0642 # Protein_GI_number: 16129567 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     433       1     433     433     874  100.0  0
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPH
DWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVL
AVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLN
ERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL
SAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDK
TVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPG
IAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFS
WPLWHNIPQFTSA
>gi|223713586|gb|ACDM01000012.1| GENE    23     24793  -     25512    593    239 aa, chain - ## HITS:1  COG:rstA KEGG:ns NR:ns ## COG: rstA COG0745 # Protein_GI_number: 16129566 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     239       4     242     242     447  100.0  1e-125
MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG
MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE
QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI
MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE
>gi|223713586|gb|ACDM01000012.1| GENE    24     25641  -     25976    355    111 aa, chain + ## HITS:1  COG:ECs2313 KEGG:ns NR:ns ## COG: ECs2313 COG3136 # Protein_GI_number: 15831567 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein required for alginate biosynthesis # Organism: Escherichia coli O157:H7 # 1     111       1     111     111     165  100.0  2e-41
MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII
FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH
>gi|223713586|gb|ACDM01000012.1| GENE    25     25973  -     26695    768    240 aa, chain - ## HITS:1  COG:ECs2312 KEGG:ns NR:ns ## COG: ECs2312 COG1028 # Protein_GI_number: 15831566 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 1     240       1     240     240     492  100.0  1e-139
MGKTQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAIDGLINAGAQCIQADFS
TNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGAPLADVLACMMQIHVNTPYLLNHAL
ERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPEVKVNSIA
PSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVDYLLTSCFVTGRSFPLDGGRHLR
>gi|223713586|gb|ACDM01000012.1| GENE    26     26732  -     28114   1367    460 aa, chain - ## HITS:1  COG:ydgI KEGG:ns NR:ns ## COG: ydgI COG0531 # Protein_GI_number: 16129563 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     460       1     460     460     781  100.0  0
MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWGITGAGILLLAFAMLIL
TRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSYLVIVFSALSFFTDTPELR
LFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVATLAKLLPLGLFVVLAMMMFKL
DTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAVVVSARARNKRDVGKATLLAVLS
ALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEMMGPWGEIIIAAGLIVSVCGAYLSW
TIMAAEVPFLAATHKAFPRIFARQNAQAAPSASLWLTNICVQICLVLIWLTGSDYNTLLT
IASEMILVPYFLVGAFLLKIATRPLHKAVGVGACIYGLWLLYASGPMHLLLSVVLYAPGL
LVFLYARKTHTHDNVLNRQEMVLIGMLLIASVPATWMLVG
>gi|223713586|gb|ACDM01000012.1| GENE    27     28300  -     29244   1065    314 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1769 NR:ns ## KEGG: EC55989_1769 # Name: ydgH # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     314       1     314     314     520  100.0  1e-146
MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRA
DKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEP
FDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKR
IVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTV
TLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQ
ERGNNLTVSADLYK
>gi|223713586|gb|ACDM01000012.1| GENE    28     29768  -     31300   1532    510 aa, chain + ## HITS:1  COG:ECs2309 KEGG:ns NR:ns ## COG: ECs2309 COG3288 # Protein_GI_number: 15831563 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Escherichia coli O157:H7 # 1     510       1     510     510     972   98.0  0
MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEG
NSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPR
ISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAA
IGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME
LFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEI
FTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTV
IRAGEITWPAPPIQVSAQPQAAQKAAPEVKTEEKCTCSPWRKYALMALAIILFGWMASVA
PKEFLGHFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSF
LSFIAVLIASINIFGGFTVTQRMLKMFRKN
>gi|223713586|gb|ACDM01000012.1| GENE    29     31311  -     32699   1432    462 aa, chain + ## HITS:1  COG:ECs2308 KEGG:ns NR:ns ## COG: ECs2308 COG1282 # Protein_GI_number: 15831562 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase beta subunit # Organism: Escherichia coli O157:H7 # 1     462       1     462     462     850  100.0  0
MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIALIATIFGPDTGNVGWI
LLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLHHDAGMAPILVNI
HLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNRHKMNLAALVVSFLLLIVFVR
TDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDL
LIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTGDDQEVGEHREITAEETA
ELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLA
EAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNV
IVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKAL
>gi|223713586|gb|ACDM01000012.1| GENE    30     32724  -     33758   1152    344 aa, chain - ## HITS:1  COG:ydgG KEGG:ns NR:ns ## COG: ydgG COG0628 # Protein_GI_number: 16129559 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 1     344       1     344     344     493  100.0  1e-139
MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVP
RVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVS
VDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPV
EGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIG
SVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLI
FWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE
>gi|223713586|gb|ACDM01000012.1| GENE    31     34170  -     34535    455    121 aa, chain + ## HITS:1  COG:ECs2306 KEGG:ns NR:ns ## COG: ECs2306 COG2076 # Protein_GI_number: 15831560 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1     121       1     121     121     182  100.0  2e-46
MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIALGVA
YALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPELEVNHGA
V
>gi|223713586|gb|ACDM01000012.1| GENE    32     34522  -     34851    453    109 aa, chain + ## HITS:1  COG:ECs2305 KEGG:ns NR:ns ## COG: ECs2305 COG2076 # Protein_GI_number: 15831559 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1     109       1     109     109     144  100.0  5e-35
MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGID
LSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMIMVKLA
>gi|223713586|gb|ACDM01000012.1| GENE    33     34890  -     35711    519    273 aa, chain - ## HITS:1  COG:ydgD KEGG:ns NR:ns ## COG: ydgD COG3591 # Protein_GI_number: 16129556 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Escherichia coli K12 # 1     273       1     273     273     519  100.0  1e-147
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQ
LETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRV
DPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGR
KVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV
QSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
>gi|223713586|gb|ACDM01000012.1| GENE    34     35987  -     36295    284    102 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAA
KKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQPAKPAAQPAA
>gi|223713586|gb|ACDM01000012.1| GENE    35     36566  -     36670     58     34 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MNPFIWVLIILMTLDALRELAGASSILGWLLTLV
>gi|223713586|gb|ACDM01000012.1| GENE    36     36719  -     37972    975    417 aa, chain - ## HITS:1  COG:ynfM KEGG:ns NR:ns ## COG: ynfM COG0477 # Protein_GI_number: 16129554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     417       1     417     417     726   99.0  0
MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILP
VLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTM
MTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLIS
GVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGL
PLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTR
YGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKG
QASSLYLFSYYLVSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA
>gi|223713586|gb|ACDM01000012.1| GENE    37     38079  -     38972    204    297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3     245       1     239     305 83  26 3e-15
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLT
AAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDY
PDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPESLEHAVIVHEPLMAMIPHDHPLAN
NPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGL
GVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR
>gi|223713586|gb|ACDM01000012.1| GENE    38     39107  -     40327    274    406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 146     394      63     317     323 110  28 2e-23
MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV
QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD
DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE
ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS
SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL
CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR
QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG
>gi|223713586|gb|ACDM01000012.1| GENE    39     40452  -     41147    814    231 aa, chain + ## HITS:1  COG:ECs2299 KEGG:ns NR:ns ## COG: ECs2299 COG0132 # Protein_GI_number: 15831553 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Escherichia coli O157:H7 # 1     231       5     235     235     444  100.0  1e-125
MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQ
SVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTEKVDHVVVEGTGGWRSL
MNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAH
YAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAMLRSVLAVDRVTV
>gi|223713586|gb|ACDM01000012.1| GENE    40     41100  -     42392   1212    430 aa, chain - ## HITS:1  COG:ynfJ KEGG:ns NR:ns ## COG: ynfJ COG0038 # Protein_GI_number: 16129550 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli K12 # 1     430       9     438     438     711   99.0  0
MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNL
SPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASL
LVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAYRAPLAGSL
FIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTG
VLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPAVWGNGYSTVQSF
LTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGE
EITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLHRDS
IYRQHTAQHS
>gi|223713586|gb|ACDM01000012.1| GENE    41     42551  -     43165    574    204 aa, chain - ## HITS:1  COG:ECs2297 KEGG:ns NR:ns ## COG: ECs2297 COG3381 # Protein_GI_number: 15831551 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli O157:H7 # 1     204       4     207     207     371  100.0  1e-103
MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAF
QTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMK
QNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGE
LARLTLAQWQSQLLIPVAVKPLFR
>gi|223713586|gb|ACDM01000012.1| GENE    42     43208  -     44062    655    284 aa, chain - ## HITS:1  COG:ynfH KEGG:ns NR:ns ## COG: ynfH COG3302 # Protein_GI_number: 16129548 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Escherichia coli K12 # 1     284       1     284     284     453  100.0  1e-127
MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIA
SVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLF
SMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTP
FAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLC
PLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG
>gi|223713586|gb|ACDM01000012.1| GENE    43     44064  -     44681    514    205 aa, chain - ## HITS:1  COG:ECs2295 KEGG:ns NR:ns ## COG: ECs2295 COG0437 # Protein_GI_number: 15831549 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1     205       1     205     205     416  100.0  1e-116
MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGVWHQNVFA
YYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEK
GHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPN
IVIKPNANSRPTGDTTGYLANPEEV
>gi|223713586|gb|ACDM01000012.1| GENE    44     44692  -     47115   1688    807 aa, chain - ## HITS:1  COG:ynfF KEGG:ns NR:ns ## COG: ynfF COG0243 # Protein_GI_number: 16129546 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     807       2     808     808    1702  100.0  0
MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVRAAEAPVEEKAVWSSCT
VNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPDRLKYPMK
RVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNSNVPYRL
MNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDIANTKLVVMFGNNPAETRMSGGG
VTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALACAIAWVLITENMVD
QPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPAEKIIQLA
REIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEW
FPMLENPVKTQISVFTWTDAIDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHG
DINHTHEVLQDDSKCEMIVGIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVI
LAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPD
YEEMKTTGIFKKKCPEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKD
EIIHPLPAYTPGFDGWDDPLRKTYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPI
DAQARGIRHGDTVRVFNNNGEMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSI
NILTSHRPSPLAKGNPSHSNLVQIEKV
>gi|223713586|gb|ACDM01000012.1| GENE    45     47176  -     49602   1969    808 aa, chain - ## HITS:1  COG:ynfE KEGG:ns NR:ns ## COG: ynfE COG0243 # Protein_GI_number: 16129545 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     808       1     808     808    1681  100.0  0
MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRNAAAAVQQAREKVVWGACSVNC
GSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVG
KRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSASAVKR
LMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTDIENSKLVVMFGNNPAETRMSGG
GITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLV
DQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKL
AREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITIE
RLPVLDNPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQH
SDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYL
IFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALP
SYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEK
DEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINP
IDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGC
VNTLTTLRPSPLAKGNPQHTNLVEIEKI
>gi|223713586|gb|ACDM01000012.1| GENE    46     49801  -     50106    238    101 aa, chain - ## HITS:1  COG:no KEGG:ECSE_1707 NR:ns ## KEGG: ECSE_1707 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1     101       2     102     102     154   98.0  9e-37
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQP
DSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ
>gi|223713586|gb|ACDM01000012.1| GENE    47     50301  -     50924    562    207 aa, chain + ## HITS:1  COG:no KEGG:ECBD_2061 NR:ns ## KEGG: ECBD_2061 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1     207      42     248     248     406  100.0  1e-112
MASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVA
LVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDD
QGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVD
CQLIIVDEGVKPAVERVYTIKNTIDYY
>gi|223713586|gb|ACDM01000012.1| GENE    48     50927  -     51487    484    186 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116490772|ref|YP_810316.1| acetyltransferase [Oenococcus oeni PSU-1] # 7     168       3     164     167 191  54 1e-47
MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRF
VVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKL
YLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAIRMCIFQHQYLAEHKTPGQTL
LKPTAQ
>gi|223713586|gb|ACDM01000012.1| GENE    49     51522  -     51863    305    113 aa, chain - ## HITS:1  COG:no KEGG:B21_01542 NR:ns ## KEGG: B21_01542 # Name: ynfB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     113       1     113     113     204  100.0  8e-52
MKITLSKRIGLLAILLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNL
RQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP
>gi|223713586|gb|ACDM01000012.1| GENE    50     51998  -     52324    261    108 aa, chain + ## HITS:1  COG:ynfA KEGG:ns NR:ns ## COG: ynfA COG1742 # Protein_GI_number: 16129540 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     108       1     108     108     164  100.0  3e-41
MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLALFVWLLTLHPAASGRVY
AAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIVAGWGRT
>gi|223713586|gb|ACDM01000012.1| GENE    51     52530  -     53744   1382    404 aa, chain + ## HITS:1  COG:rspA KEGG:ns NR:ns ## COG: rspA COG4948 # Protein_GI_number: 16129539 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1     404       1     404     404     862   99.0  0
MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLQDHLCPQLIGRDA
HRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVY
CHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEE
QLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDP
TPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI
ADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFD
NGYMHPGDKPGLGIEFDEKPAAKYPYEPAYLPFARLEDGTLWNW
>gi|223713586|gb|ACDM01000012.1| GENE    52     53756  -     54775   1025    339 aa, chain + ## HITS:1  COG:rspB KEGG:ns NR:ns ## COG: rspB COG1063 # Protein_GI_number: 16129538 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     339       1     339     339     682  100.0  0
MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE
FFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEY
AVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVL
KGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPS
ILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGL
IKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE
>gi|223713586|gb|ACDM01000012.1| GENE    53     54963  -     56243    302    426 aa, chain - ## HITS:1  COG:intQ KEGG:ns NR:ns ## COG: intQ COG0582 # Protein_GI_number: 16129537 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 31     426       2     398     398     790   97.0  0
MKYPTGVENHGGKLRIWFVYKDVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVFDYA
KQFPSSRNLEKFGEARQDLTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEKNL
ASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLA
DNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQAKNLWCVSVYTGVRPGELCALGWE
DIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDV
HLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRH
TYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVALLNTQLSEFAPTMPH
NEAMKN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:42:34 2011
 Seq name: gi|223713585|gb|ACDM01000013.1| Escherichia sp. 4_1_40B cont1.13, whole genome shotgun sequence 
 Length of sequence - 66316 bp
 Number of predicted genes - 64, with homology - 62
 Number of transcription units - 38, operones - 15 average op.length -  2.7
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term        58 -        83   -0.5 
     1     1 Tu  1     .       -    CDS        149 -       319     60  ## 
                               -    Prom       370 -       429    8.6 
                               +    Prom       377 -       436    6.6 
     2     2 Op  1     .       +    CDS        548 -       754    295  ## ECUMN_1843 putative S lysis protein; Qin prophage
     3     2 Op  2     .       +    CDS        759 -      1070    349  ## JW1547 hypothetical protein
     4     3 Op  1     .       +    CDS       1184 -      1600    281  ## COG3772 Phage-related lysozyme (muraminidase)
     5     3 Op  2     .       +    CDS       1612 -      2094    278  ## ECUMN_1840 conserved hypothetical protein; Qin prophage
     6     4 Tu  1     .       +    CDS       2457 -      2669    347  ## COG1278 Cold shock proteins
                               +    Term      2873 -      2906    2.2 
                               +    Prom      2767 -      2826    6.6 
     7     5 Tu  1     .       +    CDS       2941 -      3171     65  ## ECUMN_1838 hypothetical protein
                               +    Prom      3177 -      3236    6.6 
     8     6 Tu  1     .       +    CDS       3343 -      3516    269  ## ECS88_5024 hypothetical protein
                               +    Term      3540 -      3580    4.0 
     9     7 Tu  1     .       -    CDS       3668 -      4078     71  ## COG5562 Phage envelope protein
                               -    Prom      4104 -      4163    3.1 
                               +    Prom      4613 -      4672    5.9 
    10     8 Tu  1     .       +    CDS       4758 -      5303    343  ## COG4220 Phage DNA packaging protein, Nu1 subunit of terminase
    11     9 Op  1     .       +    CDS       5554 -      5862    142  ## EcolC_2111 prophage tail fibre domain-containing protein
    12     9 Op  2     .       +    CDS       5862 -      6437    346  ## COG5525 Bacteriophage tail assembly protein
    13    10 Tu  1     .       -    CDS       6535 -      7125    289  ## COG1961 Site-specific recombinases, DNA invertase Pin homologs
    14    11 Tu  1     .       -    CDS       7442 -      7675    242  ## ECBD_2095 uncharacterized protein YdfK
                               -    Prom      7736 -      7795    3.8 
                               +    Prom      8339 -      8398    2.1 
    15    12 Op  1   3/0.636   +    CDS       8461 -      9744   1434  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term      9753 -      9788    4.2 
                               +    Prom      9754 -      9813    3.1 
    16    12 Op  2     .       +    CDS       9833 -     11293   1267  ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases
                               -    Term     11286 -     11321    5.2 
    17    13 Tu  1     .       -    CDS      11328 -     11531    373  ## ECIAI1_1560 putative selenium carrying protein
                               -    Prom     11573 -     11632    1.5 
                               -    Term     11664 -     11699    5.8 
    18    14 Op  1   5/0.273   -    CDS      11708 -     12394    731  ## COG1802 Transcriptional regulators
                               -    Prom     12420 -     12479    5.5 
                               -    Term     12442 -     12478    3.0 
    19    14 Op  2     .       -    CDS      12483 -     13229    860  ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity
    20    15 Tu  1     .       +    CDS      13375 -     15411   1832  ## COG0339 Zn-dependent oligopeptidases
                               -    Term     15403 -     15454    0.6 
    21    16 Tu  1     .       -    CDS      15455 -     15973    232  ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase
                               -    Prom     16184 -     16243   10.1 
                               +    Prom     16126 -     16185    9.6 
    22    17 Tu  1     .       +    CDS      16249 -     16641    281  ## COG3111 Uncharacterized conserved protein
                               +    Term     16653 -     16694    6.2 
                               +    Prom     16809 -     16868    6.9 
    23    18 Tu  1     .       +    CDS      16896 -     17786    525  ## COG2199 FOG: GGDEF domain
                               +    Term     17904 -     17934    2.1 
                               -    Term     17934 -     17977   10.4 
    24    19 Op  1     .       -    CDS      18005 -     18100     86  ## 
                               -    Prom     18160 -     18219    3.0 
    25    19 Op  2     .       -    CDS      18227 -     19414    911  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     19480 -     19539    3.7 
                               +    Prom     19393 -     19452    4.7 
    26    20 Tu  1     .       +    CDS      19609 -     20508    889  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
                               -    Term     20499 -     20529    3.0 
    27    21 Op  1     .       -    CDS      20539 -     20757    128  ## B21_01502 hypothetical protein
    28    21 Op  2   3/0.636   -    CDS      20789 -     21172    296  ## COG2207 AraC-type DNA-binding domain-containing proteins
    29    21 Op  3     .       -    CDS      21192 -     21626    442  ## COG1846 Transcriptional regulators
                               -    Prom     21654 -     21713    7.1 
                               +    Prom     21746 -     21805    5.2 
    30    22 Tu  1     .       +    CDS      21838 -     22503    665  ## COG2095 Multiple antibiotic transporter
                               +    Term     22508 -     22533   -0.5 
                               -    Term     22492 -     22525    3.8 
    31    23 Tu  1     .       -    CDS      22528 -     23718    900  ## COG2814 Arabinose efflux permease
                               -    Prom     23751 -     23810    6.6 
    32    24 Tu  1     .       -    CDS      23868 -     24575    282  ## JW1520 hypothetical protein
                               -    Prom     24731 -     24790    4.8 
    33    25 Tu  1     .       -    CDS      25061 -     25942    802  ## COG0583 Transcriptional regulator
                               -    Prom     25975 -     26034    3.8 
                               +    Prom     25960 -     26019    2.4 
    34    26 Op  1   3/0.636   +    CDS      26043 -     27431   1440  ## COG1012 NAD-dependent aldehyde dehydrogenases
    35    26 Op  2     .       +    CDS      27507 -     28421    627  ## COG2066 Glutaminase
    36    26 Op  3     .       +    CDS      28421 -     28780    226  ## B21_01491 hypothetical protein
                               +    Prom     28803 -     28862    2.0 
    37    27 Tu  1     .       +    CDS      28949 -     29839    707  ## COG2199 FOG: GGDEF domain
                               +    Prom     29841 -     29900    3.5 
    38    28 Tu  1     .       +    CDS      30066 -     31517   1702  ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases
                               +    Term     31534 -     31567    3.8 
                               +    Prom     31548 -     31607    4.1 
    39    29 Tu  1     .       +    CDS      31724 -     32638    663  ## COG3781 Predicted membrane protein
    40    30 Op  1   3/0.636   -    CDS      32642 -     33400    596  ## COG4106 Trans-aconitate methyltransferase
    41    30 Op  2   5/0.273   -    CDS      33457 -     33747    371  ## COG1359 Uncharacterized conserved protein
    42    30 Op  3   6/0.273   -    CDS      33771 -     34646    890  ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes
    43    30 Op  4  16/0.000   -    CDS      34673 -     35695   1102  ## COG1879 ABC-type sugar transport system, periplasmic component
    44    30 Op  5  11/0.000   -    CDS      35707 -     36699   1052  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
    45    30 Op  6  21/0.000   -    CDS      36699 -     37727   1016  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
    46    30 Op  7     .       -    CDS      37721 -     39256    178  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               -    Prom     39494 -     39553    4.9 
                               +    Prom     39322 -     39381    6.2 
    47    31 Op  1   5/0.273   +    CDS      39505 -     40458    859  ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain
    48    31 Op  2     .       +    CDS      40537 -     41544    679  ## COG1070 Sugar (pentulose and hexulose) kinases
    49    31 Op  3   1/0.818   +    CDS      41504 -     45454   3206  ## COG3468 Type V secretory pathway, adhesin AidA
                               +    Term     45464 -     45500    7.1 
                               +    Prom     45585 -     45644    5.9 
    50    32 Op  1   8/0.182   +    CDS      45677 -     45943    255  ## COG1396 Predicted transcriptional regulators
    51    32 Op  2     .       +    CDS      45943 -     47265    602  ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes
                               +    Prom     47940 -     47999    5.6 
    52    33 Op  1   6/0.273   +    CDS      48118 -     49266    561  ## COG3188 P pilus assembly protein, porin PapC
    53    33 Op  2   4/0.545   +    CDS      49280 -     49810    331  ## COG3539 P pilus assembly protein, pilin FimA
    54    33 Op  3     .       +    CDS      49823 -     50326    247  ## COG3539 P pilus assembly protein, pilin FimA
    55    33 Op  4     .       +    CDS      50385 -     51299    378  ## B21_01472 hypothetical protein
                               +    Prom     51378 -     51437    9.9 
    56    34 Tu  1     .       +    CDS      51633 -     53912   1320  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               +    Term     53926 -     53968    8.0 
                               +    Prom     53976 -     54035    5.2 
    57    35 Op  1     .       +    CDS      54160 -     54357    143  ## S1655 hypothetical protein
    58    35 Op  2   2/0.727   +    CDS      54432 -     55193    348  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term     55241 -     55277    3.0 
                               +    Prom     55349 -     55408    5.0 
    59    36 Op  1   4/0.545   +    CDS      55595 -     57277   1363  ## COG3119 Arylsulfatase A and related enzymes
                               +    Term     57290 -     57322    5.0 
    60    36 Op  2   1/0.818   +    CDS      57329 -     58486    417  ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)
                               +    Term     58539 -     58578    5.0 
                               +    Prom     58645 -     58704    7.4 
    61    37 Op  1     .       +    CDS      58870 -     60462    922  ## COG4178 ABC-type uncharacterized transport system, permease and ATPase components
    62    37 Op  2     .       +    CDS      60500 -     62872   1940  ## JW1490 predicted porin protein
                               +    Term     62892 -     62921   -0.5 
    63    37 Op  3   3/0.636   +    CDS      62929 -     65712   1795  ## COG0612 Predicted Zn-dependent peptidases
                               +    Term     65719 -     65755    6.3 
                               +    Prom     65867 -     65926    6.7 
    64    38 Tu  1     .       +    CDS      66074 -     66314    180  ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins
Predicted protein(s)
>gi|223713585|gb|ACDM01000013.1| GENE     1       149  -       319     60     56 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MSERKNSKSRRNYLVKCSCPNCTQESEHSFSRVQKGALLICPHCNKVFQTNLKAVA
>gi|223713585|gb|ACDM01000013.1| GENE     2       548  -       754    295     68 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_1843 NR:ns ## KEGG: ECUMN_1843 # Name: essQ # Def: putative S lysis protein; Qin prophage # Organism: E.coli_UMN026 # Pathway: not_defined # 1      68       4      71      71     125  100.0  6e-28
MDKLTTGVAYGTSAGNAGFWALQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKED
RRKAARGE
>gi|223713585|gb|ACDM01000013.1| GENE     3       759  -      1070    349    103 aa, chain + ## HITS:1  COG:no KEGG:JW1547 NR:ns ## KEGG: JW1547 # Name: ydfR # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     103       1     103     103     176  100.0  3e-43
MTQDYELVVKGVRNFENKVTVTVALQDKERFDGEIFDLDVAMDRVEGAALEFYEAAARRS
VRQVFLEVAEKLSEKVESYLQHQYSFKIENPANKHERPHHKYL
>gi|223713585|gb|ACDM01000013.1| GENE     4      1184  -      1600    281    138 aa, chain + ## HITS:1  COG:ydfQ KEGG:ns NR:ns ## COG: ydfQ COG3772 # Protein_GI_number: 16129513 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Escherichia coli K12 # 1     138      40     177     177     286  100.0  7e-78
MAYRDGSGIWTICRGATVVDGKTVFPNMKLSKEKCDQVNAIERDKALAWVERNIKVPLTE
PQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYG
QVIRRDQESALTCWGIEQ
>gi|223713585|gb|ACDM01000013.1| GENE     5      1612  -      2094    278    160 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_1840 NR:ns ## KEGG: ECUMN_1840 # Name: ydfP # Def: conserved hypothetical protein; Qin prophage # Organism: E.coli_UMN026 # Pathway: not_defined # 1     160       6     165     165     259  100.0  2e-68
MVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKD
AQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAAAVRGKTTKTAEGMLTN
MLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRDKKHQM
>gi|223713585|gb|ACDM01000013.1| GENE     6      2457  -      2669    347     70 aa, chain + ## HITS:1  COG:cspI KEGG:ns NR:ns ## COG: cspI COG1278 # Protein_GI_number: 16129511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli K12 # 1      70       1      70      70     134  100.0  5e-32
MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK
GPAAVHVVAL
>gi|223713585|gb|ACDM01000013.1| GENE     7      2941  -      3171     65     76 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_1838 NR:ns ## KEGG: ECUMN_1838 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      76      15      90      90     142  100.0  4e-33
MKKIIVFFNSEPAVVVPAMTGVNTIMREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADR
HVTSEEILEAAIRLLS
>gi|223713585|gb|ACDM01000013.1| GENE     8      3343  -      3516    269     57 aa, chain + ## HITS:1  COG:no KEGG:ECS88_5024 NR:ns ## KEGG: ECS88_5024 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      57      32      88      88      78   92.0  8e-14
MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI
>gi|223713585|gb|ACDM01000013.1| GENE     9      3668  -      4078     71    136 aa, chain - ## HITS:1  COG:ydfO KEGG:ns NR:ns ## COG: ydfO COG5562 # Protein_GI_number: 16129508 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1     136       6     141     141     236  100.0  8e-63
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLK
NIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS
LLFTESIQKTTQILPR
>gi|223713585|gb|ACDM01000013.1| GENE    10      4758  -      5303    343    181 aa, chain + ## HITS:1  COG:nohA KEGG:ns NR:ns ## COG: nohA COG4220 # Protein_GI_number: 16129507 # Func_class: L Replication, recombination and repair # Function: Phage DNA packaging protein, Nu1 subunit of terminase # Organism: Escherichia coli K12 # 1     181       1     181     189     309   95.0  1e-84
MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENE
KLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSR
IAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELITGRTLTVTRAA
R
>gi|223713585|gb|ACDM01000013.1| GENE    11      5554  -      5862    142    102 aa, chain + ## HITS:1  COG:no KEGG:EcolC_2111 NR:ns ## KEGG: EcolC_2111 # Name: not_defined # Def: prophage tail fibre domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 2     102     907    1007    1007     121   98.0  9e-27
MGTAGAHTHSMTFVSGGSSGAPGSGSPDYSKYSVNTSSAGAHTHSVSGTAASAGAHAHTV
GIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA
>gi|223713585|gb|ACDM01000013.1| GENE    12      5862  -      6437    346    191 aa, chain + ## HITS:1  COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 50     191     103     244     247     267   94.0  7e-72
MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNS
DEASWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPGGEYQKWNGTAWVKDTEA
EKLFRIREAEETKNSLMQIASEHIAPLQDAVDLEIATEEETLLLEAWKKYRVLLNRVDTS
TAPDIEWPALP
>gi|223713585|gb|ACDM01000013.1| GENE    13      6535  -      7125    289    196 aa, chain - ## HITS:1  COG:pinR KEGG:ns NR:ns ## COG: pinR COG1961 # Protein_GI_number: 16129335 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli K12 # 1     196       1     196     196     359   99.0  2e-99
MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARL
KCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMHVISAV
AEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVVFERIKSGVSISAIAREFKTS
RQTILRAKAKLQTPDI
>gi|223713585|gb|ACDM01000013.1| GENE    14      7442  -      7675    242     77 aa, chain - ## HITS:1  COG:no KEGG:ECBD_2095 NR:ns ## KEGG: ECBD_2095 # Name: not_defined # Def: uncharacterized protein YdfK # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      77       1      77      77     138  100.0  6e-32
MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELL
QTAISVLKDNQNLNGKM
>gi|223713585|gb|ACDM01000013.1| GENE    15      8461  -      9744   1434    427 aa, chain + ## HITS:1  COG:ydfJ KEGG:ns NR:ns ## COG: ydfJ COG0477 # Protein_GI_number: 16129502 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     427       1     427     427     788  100.0  0
MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKK
VLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAP
KGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWL
RMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYL
VQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSII
VDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGF
GPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRA
AQPSRSL
>gi|223713585|gb|ACDM01000013.1| GENE    16      9833  -     11293   1267    486 aa, chain + ## HITS:1  COG:ydfI KEGG:ns NR:ns ## COG: ydfI COG0246 # Protein_GI_number: 16129501 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1     486       1     486     486     987   99.0  0
MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLI
GGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIV
SLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVM
SCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQL
TGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLA
YLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALR
HRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISD
PLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATV
AKYSVK
>gi|223713585|gb|ACDM01000013.1| GENE    17     11328  -     11531    373     67 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_1560 NR:ns ## KEGG: ECIAI1_1560 # Name: ydfZ # Def: putative selenium carrying protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      67       1      67      67     114  100.0  1e-24
MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLD
LIRLGMN
>gi|223713585|gb|ACDM01000013.1| GENE    18     11708  -     12394    731    228 aa, chain - ## HITS:1  COG:ECs2149 KEGG:ns NR:ns ## COG: ECs2149 COG1802 # Protein_GI_number: 15831403 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     228       1     228     228     414  100.0  1e-116
MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLA
ENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQ
RIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEML
LRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
>gi|223713585|gb|ACDM01000013.1| GENE    19     12483  -     13229    860    248 aa, chain - ## HITS:1  COG:ydfG KEGG:ns NR:ns ## COG: ydfG COG4221 # Protein_GI_number: 16129498 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Escherichia coli K12 # 1     248       1     248     248     504  100.0  1e-143
MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAA
IEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPG
MVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLV
GGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSY
AGLNVHRQ
>gi|223713585|gb|ACDM01000013.1| GENE    20     13375  -     15411   1832    678 aa, chain + ## HITS:1  COG:dcp KEGG:ns NR:ns ## COG: dcp COG0339 # Protein_GI_number: 16129497 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Escherichia coli K12 # 1     678       4     681     681    1328  100.0  0
MNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALE
QSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQRR
ESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSG
GLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWLIPLLNTTQQPALAEMRDRATREKLF
IAGWTRAEKNDANDTRAIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMRE
IVPAARQRASDELASIQAVIDKQQGGFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELN
TVLNEGVFWTANQLFGIKFVERFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARDSKSG
GAWMGNFVEQSTLNKTHPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQ
RYATLSGTNTPRDFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFN
KGYEMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHI
FGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQW
RGKAPKIMPMLQHRGLNI
>gi|223713585|gb|ACDM01000013.1| GENE    21     15455  -     15973    232    172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 18     172     747     902     904 94  36 2e-18
MNINRDKIVQLVDTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFY
GAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPE
GGEDGTPAGTVWFAWHIKGQNYTAVMHFAGDCETVLALAVRFALAQLLQLLL
>gi|223713585|gb|ACDM01000013.1| GENE    22     16249  -     16641    281    130 aa, chain + ## HITS:1  COG:ydeI KEGG:ns NR:ns ## COG: ydeI COG3111 # Protein_GI_number: 16129495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     130       1     130     130     246  100.0  9e-66
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHD
GASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAP
AVVRVTHLQK
>gi|223713585|gb|ACDM01000013.1| GENE    23     16896  -     17786    525    296 aa, chain + ## HITS:1  COG:ydeH_2 KEGG:ns NR:ns ## COG: ydeH_2 COG2199 # Protein_GI_number: 16129494 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 121     296       1     176     176     362  100.0  1e-100
MIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYGLCQFGRWIDH
LGPLDNDELPYVRLMDSAHQHMHNCGRELMLAIVENHWQDAHFDAFQEGLLSFTAALTDY
KIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLI
GDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITH
SEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRV
>gi|223713585|gb|ACDM01000013.1| GENE    24     18005  -     18100     86     31 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD
>gi|223713585|gb|ACDM01000013.1| GENE    25     18227  -     19414    911    395 aa, chain - ## HITS:1  COG:ydeF KEGG:ns NR:ns ## COG: ydeF COG0477 # Protein_GI_number: 16129493 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     395       1     395     395     663   99.0  0
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS
LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAW
FADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQI
WVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLL
WGMSAAVFTVGEIIYAPGEYMLIDHIAPPEMKASYFSAQSLGWLGAAINPLVSGVVLTSL
PPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC
>gi|223713585|gb|ACDM01000013.1| GENE    26     19609  -     20508    889    299 aa, chain + ## HITS:1  COG:ECs2140 KEGG:ns NR:ns ## COG: ECs2140 COG0697 # Protein_GI_number: 15831394 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1     297       1     297     299     459   96.0  1e-129
MSRKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNL
LLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIMLGAFTFGERLHGKQLAGI
ALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVIW
SALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE
TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMTGLYINVFGLRWRKAVKVGS
>gi|223713585|gb|ACDM01000013.1| GENE    27     20539  -     20757    128     72 aa, chain - ## HITS:1  COG:no KEGG:B21_01502 NR:ns ## KEGG: B21_01502 # Name: marB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      72       1      72      72     122  100.0  3e-27
MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD
ALGVPYYNQHAM
>gi|223713585|gb|ACDM01000013.1| GENE    28     20789  -     21172    296    127 aa, chain - ## HITS:1  COG:ECs2138 KEGG:ns NR:ns ## COG: ECs2138 COG2207 # Protein_GI_number: 15831392 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     127       3     129     129     233  100.0  9e-62
MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS
RKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLH
PLNHYNS
>gi|223713585|gb|ACDM01000013.1| GENE    29     21192  -     21626    442    144 aa, chain - ## HITS:1  COG:STM1520 KEGG:ns NR:ns ## COG: STM1520 COG1846 # Protein_GI_number: 16764865 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1     144       1     144     144     259   92.0  8e-70
MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVEL
KKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLH
QELTKNLTADEVATLEYLLKKVLP
>gi|223713585|gb|ACDM01000013.1| GENE    30     21838  -     22503    665    221 aa, chain + ## HITS:1  COG:marC KEGG:ns NR:ns ## COG: marC COG2095 # Protein_GI_number: 16129488 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli K12 # 1     221       1     221     221     366  100.0  1e-101
MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQSLMASVYVFAIMMVAYY
AGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSPEAKSKSEELEDEPSANIA
FVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAPPLIFFLVAVILWGSLRSSGA
IMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIKTYH
>gi|223713585|gb|ACDM01000013.1| GENE    31     22528  -     23718    900    396 aa, chain - ## HITS:1  COG:ydeA KEGG:ns NR:ns ## COG: ydeA COG2814 # Protein_GI_number: 16129487 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1     396       1     396     396     572  100.0  1e-163
MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGIMLTIYAWV
VALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFTVLVISRIGVAFAHAIFWS
ITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIVGQYFGWRMTFFAIGIGALIT
LLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA
GFSANFATALLLLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPAANSEIH
LGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHW
SMSMIGYVGAVPAFAALIWSIIIFRRWPVTLEEQTQ
>gi|223713585|gb|ACDM01000013.1| GENE    32     23868  -     24575    282    235 aa, chain - ## HITS:1  COG:no KEGG:JW1520 NR:ns ## KEGG: JW1520 # Name: yneK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     235     137     371     371     455  100.0  1e-127
MGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDL
LVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGS
NKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSD
DKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH
>gi|223713585|gb|ACDM01000013.1| GENE    33     25061  -     25942    802    293 aa, chain - ## HITS:1  COG:yneJ KEGG:ns NR:ns ## COG: yneJ COG0583 # Protein_GI_number: 16129485 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     293       1     293     293     592  100.0  1e-169
MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPA
GHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQF
SLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQV
NGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE
SMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ
>gi|223713585|gb|ACDM01000013.1| GENE    34     26043  -     27431   1440    462 aa, chain + ## HITS:1  COG:yneI KEGG:ns NR:ns ## COG: yneI COG1012 # Protein_GI_number: 16129484 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     462       9     470     470     893  100.0  0
MTITPATHAISINPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAEKLRDI
GKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEHGPAMLKAEPTLVENQQA
VIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLKHAPNVMGCAQLIAQVFKDAG
IPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDP
FIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDP
RDEENALGPMARFDLRDELHHQVEKTLAQGARLLLGGEKMAGAGNYYPPTVLANVTPEMT
AFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFIN
GYCASDARVAFGGVKKSGFGRELSHFGLHEFCNIQTVWKDRI
>gi|223713585|gb|ACDM01000013.1| GENE    35     27507  -     28421    627    304 aa, chain + ## HITS:1  COG:ECs2131 KEGG:ns NR:ns ## COG: ECs2131 COG2066 # Protein_GI_number: 15831385 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Escherichia coli O157:H7 # 1     304       5     308     308     612  100.0  1e-175
MDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIAICTVDGQLFQAGDAQERFSI
QSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLVQLEMEQGIPRNPFINAGALVVC
DMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARSEFEHSARNAAIAWLMKSFGNFHHD
VTTVLQNYFHYCALKMSCVELARTFVFLANQGKAIHIDEPVVTPMQARQINALMATSGMY
QNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAIAVWSPELDDAGNSLAGIAVLEQLTKQLG
RSVY
>gi|223713585|gb|ACDM01000013.1| GENE    36     28421  -     28780    226    119 aa, chain + ## HITS:1  COG:no KEGG:B21_01491 NR:ns ## KEGG: B21_01491 # Name: yneG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     119       1     119     119     239  100.0  3e-62
MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAADFVAKRLAPALPANDGK
QTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQRYIVAVIYHWLVVQMNQP
>gi|223713585|gb|ACDM01000013.1| GENE    37     28949  -     29839    707    296 aa, chain + ## HITS:1  COG:yneF_2 KEGG:ns NR:ns ## COG: yneF_2 COG2199 # Protein_GI_number: 16129481 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 112     296       1     185     185     381  100.0  1e-105
MLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTC
LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM
KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK
VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK
TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
>gi|223713585|gb|ACDM01000013.1| GENE    38     30066  -     31517   1702    483 aa, chain + ## HITS:1  COG:ECs2128 KEGG:ns NR:ns ## COG: ECs2128 COG0246 # Protein_GI_number: 15831382 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1     483       1     483     483     996  100.0  0
MKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDLNSGVVVVRPIETSFPP
SLSTQDGLYTTIIRGLNEKGEAVSDARLIRSVNREISVYSEYDEFLKLAHNPEMRFVFSN
TTEAGISYHAGDKFDDAPAVSYPAKLTRLLFERFSHFNGALDKGWIIIPCELIDYNGDAL
RELVLRYAQEWALPEAFIQWLDQANSFCSTLVDRIVTGYPRDEVAKLEEELGYHDGFLDT
AEHFYLFVIQGPKSLATELRLDKYPLNVLIVDDIKPYKERKVAILNGAHTALVPVAFQAG
LDTVGEAMNDAEICAFVEKAIYEEIIPVLDLPRDELESFASAVTGRFRNPYIKHQLLSIA
LNGMTKFRTRILPQLLAGQKANGTLPARLTFALAALIAFYRGERNGETYPVQDDAHWLER
YQQLWSQHRDRVIGTQELVAIVLAEKDHWEQDLTQVPGLVEQVANDLDAILEKGMREAVR
PLC
>gi|223713585|gb|ACDM01000013.1| GENE    39     31724  -     32638    663    304 aa, chain + ## HITS:1  COG:yneE KEGG:ns NR:ns ## COG: yneE COG3781 # Protein_GI_number: 16129479 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     304      18     321     321     597  100.0  1e-170
MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSIL
GVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAF
AHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDIL
FISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI
SVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKILPDRH
YQLT
>gi|223713585|gb|ACDM01000013.1| GENE    40     32642  -     33400    596    252 aa, chain - ## HITS:1  COG:tam KEGG:ns NR:ns ## COG: tam COG4106 # Protein_GI_number: 16129478 # Func_class: R General function prediction only # Function: Trans-aconitate methyltransferase # Organism: Escherichia coli K12 # 1     252       1     252     252     493   99.0  1e-139
MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITG
IDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLL
NPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWR
TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLRENGQILLA
FPRLFIVARRME
>gi|223713585|gb|ACDM01000013.1| GENE    41     33457  -     33747    371     96 aa, chain - ## HITS:1  COG:ECs2125 KEGG:ns NR:ns ## COG: ECs2125 COG1359 # Protein_GI_number: 15831379 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      96       1      96      96     188  100.0  2e-48
MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYKDED
AVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP
>gi|223713585|gb|ACDM01000013.1| GENE    42     33771  -     34646    890    291 aa, chain - ## HITS:1  COG:yneB KEGG:ns NR:ns ## COG: yneB COG1830 # Protein_GI_number: 16129476 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli K12 # 1     291       1     291     291     597  100.0  1e-171
MADLDDIKDGKDFRTDQPQKNIPFTLKGCGALDWGMQSRLSRIFNPKTGKTVMLAFDHGY
FQGPTTGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNRPVVLRASGANSILAELSN
EAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDM
VRDQRYFSLATRIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPEREALEMCW
QAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSEKQ
>gi|223713585|gb|ACDM01000013.1| GENE    43     34673  -     35695   1102    340 aa, chain - ## HITS:1  COG:yneA KEGG:ns NR:ns ## COG: yneA COG1879 # Protein_GI_number: 16129475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     340       1     340     340     647  100.0  0
MTLHRFKKIALLSALGIAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDV
TYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTK
PECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAK
EHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKV
AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVG
QVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF
>gi|223713585|gb|ACDM01000013.1| GENE    44     35707  -     36699   1052    330 aa, chain - ## HITS:1  COG:ydeZ KEGG:ns NR:ns ## COG: ydeZ COG1172 # Protein_GI_number: 16129474 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1     330       1     330     330     511  100.0  1e-145
MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGG
IDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITL
GTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLW
LHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDL
GASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGAL
LIVVVVGRSVSLHRQQIKEWLARRANNPLP
>gi|223713585|gb|ACDM01000013.1| GENE    45     36699  -     37727   1016    342 aa, chain - ## HITS:1  COG:ydeY KEGG:ns NR:ns ## COG: ydeY COG1172 # Protein_GI_number: 16129473 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1     342       1     342     342     541  100.0  1e-153
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLT
RNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVA
TLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKT
AFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAV
LVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
>gi|223713585|gb|ACDM01000013.1| GENE    46     37721  -     39256    178    511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 268     481       1     217     245 73  26 4e-12
MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGI
TPADSGTLEIEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQK
MKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLF
SRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAV
REKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTGEGFRNVSLTLNAGEILGLAGLVGA
GRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAW
NVCALTHNLRGFWAKTAKDNATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEA
SPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELMADRVYVMHQGE
ITHSALTERDINVETIMRVAFGDSQRQEASC
>gi|223713585|gb|ACDM01000013.1| GENE    47     39505  -     40458    859    317 aa, chain + ## HITS:1  COG:ydeW KEGG:ns NR:ns ## COG: ydeW COG2390 # Protein_GI_number: 16129471 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Escherichia coli K12 # 1     317       1     317     317     588  100.0  1e-168
MTINDSAISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRLLEKGHQSGII
RVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIGAAHMLMSLLQPQQML
AIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGIGQLNAACSVNIIPAPLRASS
ADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDDATIIRSGYISQGEQLMIGRKGA
VGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGY
INALVTDQDTAAAILRS
>gi|223713585|gb|ACDM01000013.1| GENE    48     40537  -     41544    679    335 aa, chain + ## HITS:1  COG:ydeV KEGG:ns NR:ns ## COG: ydeV COG1070 # Protein_GI_number: 16129470 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     329       1     329     530     670   99.0  0
MARLFTLSESKYYLMALDAGTGSIRAVIFDLEGNQIAVGQAEWRHLAVPDVPGSMEFDLN
KNWQLACECMRQALHNAGIAPEYIAAVSACSMREGIVLYNNEGAPIWACANVDARAAREV
SELKELHNNTFENEVYRATGQTLALSAIPRLLWLAHHRSDIYRQASTITMISDWLAYMLS
GELAVDPSNAGTTGLLDLTTRDWKPALLDMAGLRADILSPVKETGTLLGVVSSQAAELCG
LKAGTPVVVGGGDVQLGCLGLGVVRPAQTAVLGGTFWQQVVNLAAPVTDPEMNVRVNPHV
IPGMVQAESISFFTGLTMRWFRDAFCAEDCGYQCR
>gi|223713585|gb|ACDM01000013.1| GENE    49     41504  -     45454   3206   1316 aa, chain + ## HITS:1  COG:ydeU KEGG:ns NR:ns ## COG: ydeU COG3468 # Protein_GI_number: 16129468 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 851    1316       1     466     466     845   99.0  0
MLSVPKTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNISTDSLWNLKTSS
TNAQLLQVGVLGTGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLLETFNMYVGTS
GTGTLTLTNNGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGFITNATKVEFGLGE
GVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTLVNDGLLTIAS
HTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQLSSSDKMFGFT
HATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSIGGLAMNGGTI
IFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKPWNDPMANNPL
TTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQNGTVVAEGDY
GFRLTTAPGNGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGGEGDLAINTVR
QVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGSTQTVETFTGQM
GSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTSISPNAEVSLD
NTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNSRFVGQFNIDT
GSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGILTLNNDSAAY
QGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDMNVMPGGALRVAKTTIG
GNLENGGTVQMNSEGGKPGNVLTVNGNYTGNNGLMTFNATLGGDNSPTDKMNVKGDTQGN
TRVRVDNIGGVGAQTVNGIELIEVGGNSAGNFALTTGTVEAGAYVYTLAKGKGNDEKNWY
LTSKWDGVTPADTPDPINNPPVVDPEGPSVYRPEAGSYISNIAAANSLFSHRLHDRLGEP
QYTDSLHSQGSASSMWMRHVGGHERSRAGDGQLNTQANRYVLQLGGDLAQWSSNAQDRWH
LGVMAGYANQHSNTQSNRVGYKSDGRISGYSAGLYATWYQNDANKTGAYVDSWALYNWFD
NSVSSDNRSADDYDSRGVTASVEGGYTFEAGTFSGSEGTLNTWYVQPQAQITWMGVKDSD
HTRKDGTRIETEGDGNVQTRLGVKTYLNSHHQRDDGKQREFQPYIEANWINNSKVYAVKM
NGQTVGREGARNLGEVRTGVEAKVNNNLSLWGNVGVQLGDKGYSDTQGMLEVKYSW
>gi|223713585|gb|ACDM01000013.1| GENE    50     45677  -     45943    255     88 aa, chain + ## HITS:1  COG:hipB KEGG:ns NR:ns ## COG: hipB COG1396 # Protein_GI_number: 16129467 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1      88       1      88      88     139  100.0  1e-33
MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKI
LQSLELSMTLCDAKNASPESTEQQNLEW
>gi|223713585|gb|ACDM01000013.1| GENE    51     45943  -     47265    602    440 aa, chain + ## HITS:1  COG:hipA KEGG:ns NR:ns ## COG: hipA COG3550 # Protein_GI_number: 16129466 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Escherichia coli K12 # 1     440       1     440     440     911  100.0  0
MPKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNF
FDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKL
TEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHII
KLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRW
NAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQV
FQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASK
GKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVT
AVESNVLRLHGRLSREYGSK
>gi|223713585|gb|ACDM01000013.1| GENE    52     48118  -     49266    561    382 aa, chain + ## HITS:1  COG:Z2203 KEGG:ns NR:ns ## COG: Z2203 COG3188 # Protein_GI_number: 15801633 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 EDL933 # 1     382     502     883     883     723   98.0  0
MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRN
SNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGA
YGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHSAIARATFNAQIGG
KVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCI
VEYKLPEVSPGTLLNQQTAICR
>gi|223713585|gb|ACDM01000013.1| GENE    53     49280  -     49810    331    176 aa, chain + ## HITS:1  COG:ydeS KEGG:ns NR:ns ## COG: ydeS COG3539 # Protein_GI_number: 16129463 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     176       1     176     176     338  100.0  2e-93
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP
TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDA
NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
>gi|223713585|gb|ACDM01000013.1| GENE    54     49823  -     50326    247    167 aa, chain + ## HITS:1  COG:ydeR KEGG:ns NR:ns ## COG: ydeR COG3539 # Protein_GI_number: 16129462 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     167       1     167     167     308  100.0  3e-84
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ
PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALK
NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
>gi|223713585|gb|ACDM01000013.1| GENE    55     50385  -     51299    378    304 aa, chain + ## HITS:1  COG:no KEGG:B21_01472 NR:ns ## KEGG: B21_01472 # Name: ydeQ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     304       1     304     304     573  100.0  1e-162
MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDL
SQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGD
KTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLGSGNPRNFTWNIISNNNVVM
PTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA
TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVT
FIYE
>gi|223713585|gb|ACDM01000013.1| GENE    56     51633  -     53912   1320    759 aa, chain + ## HITS:1  COG:ydeP KEGG:ns NR:ns ## COG: ydeP COG0243 # Protein_GI_number: 16129460 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     759       1     759     759    1566  100.0  0
MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKPEGFDCPGCAWPDPKHS
ASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHELEAAGRLTQPLKYDAVSD
CYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSN
MCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKM
IAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDA
ASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEWKDIERISGLSQTQIAELADAYAAAER
TIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNVQGDRTVGITEKP
SAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPL
TQLDLAVHVATKLNRSHLLTARHSYILPVLGRSEIDMQKNGAQAVTVEDSMSMIHASRGV
LKPAGVMLKSECAVVAGIAQAALPQSVVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRH
PGGFHLINAAAERRWMTPSGKANFITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGM
DDRYRGVFGQRDVVFMSAKQAKICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMAD
RSLVTYFPESNHMLTLDNHDPLSGIPGYKSIPVELEPSN
>gi|223713585|gb|ACDM01000013.1| GENE    57     54160  -     54357    143     65 aa, chain + ## HITS:1  COG:no KEGG:S1655 NR:ns ## KEGG: S1655 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      64       1      64      67      87   98.0  2e-16
MHATTVKNKITQRDNYKEIMSAIVVVLLLTLTLIAIFSAIDQLSISEMGRIARDLTHFII
NSLQG
>gi|223713585|gb|ACDM01000013.1| GENE    58     54432  -     55193    348    253 aa, chain + ## HITS:1  COG:ydeO KEGG:ns NR:ns ## COG: ydeO COG2207 # Protein_GI_number: 16129458 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     253       1     253     253     507   99.0  1e-144
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK
YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA
CKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ
ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT
GMNTGNTMNALAI
>gi|223713585|gb|ACDM01000013.1| GENE    59     55595  -     57277   1363    560 aa, chain + ## HITS:1  COG:ydeN KEGG:ns NR:ns ## COG: ydeN COG3119 # Protein_GI_number: 16129457 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1     560      12     571     571    1090  100.0  0
MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNI
IVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGV
RFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAA
VGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPS
LFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQ
FNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQ
KGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVS
LLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQ
FSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPP
LSEVNQEKFNNIKKALSEAK
>gi|223713585|gb|ACDM01000013.1| GENE    60     57329  -     58486    417    385 aa, chain + ## HITS:1  COG:ydeM KEGG:ns NR:ns ## COG: ydeM COG0641 # Protein_GI_number: 16129456 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1     385       6     390     390     799  100.0  0
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQG
GEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGP
QELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGS
KHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIR
QFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMN
SVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMN
AMVELAKNRVPLYHIMDVAKQMENN
>gi|223713585|gb|ACDM01000013.1| GENE    61     58870  -     60462    922    530 aa, chain + ## HITS:1  COG:yddA KEGG:ns NR:ns ## COG: yddA COG4178 # Protein_GI_number: 16129455 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease and ATPase components # Organism: Escherichia coli K12 # 13     530      44     561     561    1024  100.0  0
MLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVN
KTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKT
LSLSFGFIQSLSMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHK
VGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRL
MNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYK
YDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVS
PGKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKA
LPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWIFLD
ETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL
>gi|223713585|gb|ACDM01000013.1| GENE    62     60500  -     62872   1940    790 aa, chain + ## HITS:1  COG:no KEGG:JW1490 NR:ns ## KEGG: JW1490 # Name: yddB # Def: predicted porin protein # Organism: E.coli_J # Pathway: not_defined # 1     790       1     790     790    1519   99.0  0
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK
VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHGIWYTELSCT
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN
QSESYVINAAGKKTNHTIYHKGKGRLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD
LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK
THSFSLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGR
TFWLDVSMKF
>gi|223713585|gb|ACDM01000013.1| GENE    63     62929  -     65712   1795    927 aa, chain + ## HITS:1  COG:pqqL KEGG:ns NR:ns ## COG: pqqL COG0612 # Protein_GI_number: 16129453 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Escherichia coli K12 # 1     927       5     931     931    1696   99.0  0
MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQI
HTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMGLRFGRDVNAYTSYDETVY
QVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVITEEWRAHQDAKWRTSQARRP
FLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNNMTFIVVGDIDSKEALALIKD
NLSKLPANKAAENRVWPTKAENHLRFNIINDKENRVNGIALYYRLPMVQVNDEQSFIEQA
EWSMLVQLFNQRLQERIQSGELKTISGGTARSVKIAPDYQSLFFRVNARDDNMQDAANAL
MAELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAERDLRMLTSRLASSSLNNTPFLSP
EETYQLSKRLWQQITVQSLAEKWQQLRKNQDAFWEQMVNNEVAAKKALSPAAILALEKEY
ANKKLAAYVFPGRNLSLTVDADPQAEISSKETLAENLTSLTLSNGARVILAKSAGEEQKL
QIIAVSNKGDLSFPAQQKSLIALANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMN
TLLSVSARTNNPEPGFQLINQRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMY
ETRYADDRTKLLQENQIAQFTAADALAADRQLFSSPADITFVIVGNVAEDKLVALITRYL
GSIKHSDSPLAAGKPLTRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLPTRMALDAF
NVALAKDLRVNIREQASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMV
KRLAKGISEQELNEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQM
TVENVNTAVKQYLSHPVNTYTGVLLPK
>gi|223713585|gb|ACDM01000013.1| GENE    64     66074  -     66314    180     80 aa, chain + ## HITS:1  COG:ECs2098 KEGG:ns NR:ns ## COG: ECs2098 COG0076 # Protein_GI_number: 15831352 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1      80       1      80     466     170  100.0  5e-43
MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNL
ATFCQTWDDENVHKLMDLSI
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:43:32 2011
 Seq name: gi|223713584|gb|ACDM01000014.1| Escherichia sp. 4_1_40B cont1.14, whole genome shotgun sequence 
 Length of sequence - 37755 bp
 Number of predicted genes - 32, with homology - 32
 Number of transcription units - 15, operones - 7 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        65 -       124    1.7 
     1     1 Op  1     .       +    CDS        182 -      1717   1624  ## COG0531 Amino acid transporters
                               +    Term      1743 -      1777    5.2 
                               +    Prom      1751 -      1810    1.9 
     2     1 Op  2     .       +    CDS       2013 -      3167    819  ## COG1649 Uncharacterized protein conserved in bacteria
                               +    Term      3185 -      3233   13.1 
                               +    Prom      3318 -      3377    6.3 
     3     2 Op  1   5/0.000   +    CDS       3531 -      4913   1216  ## COG2199 FOG: GGDEF domain
     4     2 Op  2   1/1.000   +    CDS       4938 -      7337   2101  ## COG2202 FOG: PAS/PAC domain
                               +    Term      7351 -      7376   -0.5 
                               +    Prom      7363 -      7422    1.6 
     5     3 Op  1   3/0.500   +    CDS       7595 -      8176    380  ## COG2173 D-alanyl-D-alanine dipeptidase
     6     3 Op  2  38/0.000   +    CDS       8190 -      9740   1557  ## COG0747 ABC-type dipeptide transport system, periplasmic component
     7     3 Op  3  49/0.000   +    CDS       9742 -     10764    316  ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21
     8     3 Op  4  44/0.000   +    CDS      10764 -     11657    829  ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
     9     3 Op  5  17/0.000   +    CDS      11654 -     12640    474  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    10     3 Op  6     .       +    CDS      12633 -     13559    618  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
                               -    Term     13560 -     13599    6.5 
    11     4 Tu  1     .       -    CDS      13615 -     14046    526  ## COG1764 Predicted redox protein, regulator of disulfide bond formation
                               -    Prom     14258 -     14317    7.1 
                               +    Prom     14215 -     14274    5.1 
    12     5 Op  1     .       +    CDS      14391 -     14606    302  ## B21_01451 hypothetical protein
    13     5 Op  2     .       +    CDS      14708 -     14845    230  ## PROTEIN SUPPORTED gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22
                               +    Term     14868 -     14919    8.4 
                               +    Prom     14860 -     14919    4.3 
    14     6 Tu  1     .       +    CDS      15002 -     16699   1918  ## COG0281 Malic enzyme
                               +    Term     16706 -     16741    6.5 
                               +    Prom     16713 -     16772    4.0 
    15     7 Tu  1     .       +    CDS      16833 -     17843   1022  ## COG1064 Zn-dependent alcohol dehydrogenases
    16     8 Tu  1     .       +    CDS      17989 -     18273    314  ## COG3093 Plasmid maintenance system antidote protein
                               -    Term     18617 -     18660    9.3 
    17     9 Op  1  12/0.000   -    CDS      18680 -     19333    919  ## COG2864 Cytochrome b subunit of formate dehydrogenase
    18     9 Op  2  16/0.000   -    CDS      19326 -     20210    995  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
    19     9 Op  3   5/0.000   -    CDS      20223 -     22634   2709  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    20     9 Op  4     .       -    CDS      22683 -     23270    541  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Prom     23456 -     23515    6.2 
                               +    Prom     23271 -     23330    4.2 
    21    10 Tu  1     .       +    CDS      23502 -     24383    725  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
                               +    Prom     24545 -     24604    5.0 
    22    11 Op  1   2/0.833   +    CDS      24643 -     24933    422  ## COG3203 Outer membrane protein (porin)
    23    11 Op  2   2/0.833   +    CDS      24993 -     25913    215  ## COG4886 Leucine-rich repeat (LRR) protein
    24    12 Op  1  10/0.000   +    CDS      26611 -     27999   1003  ## COG2223 Nitrate/nitrite transporter
    25    12 Op  2  13/0.000   +    CDS      28081 -     31821   4013  ## COG5013 Nitrate reductase alpha subunit
    26    12 Op  3  12/0.000   +    CDS      31818 -     33362   1454  ## COG1140 Nitrate reductase beta subunit
    27    12 Op  4  12/0.000   +    CDS      33362 -     34057    821  ## COG2180 Nitrate reductase delta subunit
    28    12 Op  5   4/0.167   +    CDS      34054 -     34734    507  ## COG2181 Nitrate reductase gamma subunit
    29    12 Op  6     .       +    CDS      34813 -     35706    866  ## COG0384 Predicted epimerase, PhzC/PhzF homolog
    30    13 Tu  1     .       -    CDS      35802 -     36647    685  ## COG2162 Arylamine N-acetyltransferase
                               -    Prom     36761 -     36820    3.3 
                               +    Prom     36586 -     36645    2.7 
    31    14 Tu  1     .       +    CDS      36820 -     37389    424  ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
                               +    Term     37552 -     37578   -1.0 
    32    15 Tu  1     .       -    CDS      37386 -     37619    185  ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog
                               -    Prom     37642 -     37701    4.0 
Predicted protein(s)
>gi|223713584|gb|ACDM01000014.1| GENE     1       182  -      1717   1624    511 aa, chain + ## HITS:1  COG:xasA KEGG:ns NR:ns ## COG: xasA COG0531 # Protein_GI_number: 16129451 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     511       1     511     511     895  100.0  0
MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLC
AAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW
PALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH
SGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL
LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLG
VLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTG
GGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL
LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLE
PINSQNAPKGHFFLHPRARSPHYIVMNDKKH
>gi|223713584|gb|ACDM01000014.1| GENE     2      2013  -      3167    819    384 aa, chain + ## HITS:1  COG:ECs2096 KEGG:ns NR:ns ## COG: ECs2096 COG1649 # Protein_GI_number: 15831350 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     384      56     439     439     759   99.0  0
MRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGT
ALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPSTIR
ELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFD
DYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSP
AGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLA
KWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTIL
FREDYLNKPQTQQAVSYLQSRWGS
>gi|223713584|gb|ACDM01000014.1| GENE     3      3531  -      4913   1216    460 aa, chain + ## HITS:1  COG:ECs2095_2 KEGG:ns NR:ns ## COG: ECs2095_2 COG2199 # Protein_GI_number: 15831349 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli O157:H7 # 269     460       1     192     192     367  100.0  1e-101
MEMYFKRMKDEWTGLVEQADPPIRAKAAEIAVAHAHYLSIEFYRIVRIDPHAEEFLSNEQ
VERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIGIPVEIVEMGFRVLKKILY
PVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDSSASKEDENYRIFSLLENAEE
EKERQIASILSWEIDIIYKILLDSDLGSSLPLSQADFGLWFNHKGRHYFSGIAEVGHISR
LIQDFDGIFNQTMRNTRNLNNRSLRVKFLLQIRNTVSQIITLLRELFEEVSRHEVGMDVL
TKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAF
YDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIALSLSI
GAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWKASL
>gi|223713584|gb|ACDM01000014.1| GENE     4      4938  -      7337   2101    799 aa, chain + ## HITS:1  COG:ECs2094_1 KEGG:ns NR:ns ## COG: ECs2094_1 COG2202 # Protein_GI_number: 15831348 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Escherichia coli O157:H7 # 1     342       1     342     342     705   99.0  0
MKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML
IPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLA
LVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEASGMQ
PDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQN
LVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGEIICRNIESVLNESHVSLFALRNGM
PIHWASSSHGAEIQNAQSWSATIRQRDGAPAGILQIKTSSGAETSAFIERVADISQHMAA
LALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSPVVYLIGVDHIQDVIDS
LGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVVSK
PIMIDDKPFPLTLSIGISYDLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKE
RLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEE
IGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGID
GHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKID
KSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSR
PLPAEEIPGWMSSVLPLKI
>gi|223713584|gb|ACDM01000014.1| GENE     5      7595  -      8176    380    193 aa, chain + ## HITS:1  COG:ddpX KEGG:ns NR:ns ## COG: ddpX COG2173 # Protein_GI_number: 16129447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Escherichia coli K12 # 1     193       1     193     193     395  100.0  1e-110
MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLS
GLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGTAIDLTLRDEHGNILDMGA
GFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSEWWHFELPQAASYPLLADQ
FSCFISPGTQHVS
>gi|223713584|gb|ACDM01000014.1| GENE     6      8190  -      9740   1557    516 aa, chain + ## HITS:1  COG:ddpA KEGG:ns NR:ns ## COG: ddpA COG0747 # Protein_GI_number: 16129446 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     516       1     516     516    1014  100.0  0
MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPS
YQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSF
ERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHA
ADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRL
QLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISW
STDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTF
LYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADP
YMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAY
VYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK
>gi|223713584|gb|ACDM01000014.1| GENE     7      9742  -     10764    316    340 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 70     332      46     310     320 126  29 2e-28
MTFWSILRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAGDRASDAIVENIRQQLGLD
QPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGI
LSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHV
TGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTAR
ASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQAL
DFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRIGRGGGE
>gi|223713584|gb|ACDM01000014.1| GENE     8     10764  -     11657    829    297 aa, chain + ## HITS:1  COG:ddpC KEGG:ns NR:ns ## COG: ddpC COG1173 # Protein_GI_number: 16129444 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1     297       2     298     298     540  100.0  1e-153
MLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAI
DLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVL
GGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALV
VRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQ
PSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
>gi|223713584|gb|ACDM01000014.1| GENE     9     11654  -     12640    474    328 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 20     316      33     324     329 187  37 1e-46
MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLP
TGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIR
HHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIA
DEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGV
TADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQC
ENVPALTACGDNNQRCACWYPQQEVISV
>gi|223713584|gb|ACDM01000014.1| GENE    10     12633  -     13559    618    308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2     291       8     310     329 242  40 2e-63
MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQ
LLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRA
LAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ
ILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTR
LLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGR
ELRCWRAL
>gi|223713584|gb|ACDM01000014.1| GENE    11     13615  -     14046    526    143 aa, chain - ## HITS:1  COG:osmC KEGG:ns NR:ns ## COG: osmC COG1764 # Protein_GI_number: 16129441 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli K12 # 1     143       1     143     143     270  100.0  5e-73
MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACF
SMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQK
AKAGCPVSQVLKAEITLDYQLKS
>gi|223713584|gb|ACDM01000014.1| GENE    12     14391  -     14606    302     71 aa, chain + ## HITS:1  COG:no KEGG:B21_01451 NR:ns ## KEGG: B21_01451 # Name: bdm # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      71       1      71      71     129  100.0  4e-29
MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI
NYVVSGQHPTL
>gi|223713584|gb|ACDM01000014.1| GENE    13     14708  -     14845    230     45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22 [Escherichia coli O157:H7 EDL933] # 1      45       1      45      45 93  100 2e-18
MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAEK
>gi|223713584|gb|ACDM01000014.1| GENE    14     15002  -     16699   1918    565 aa, chain + ## HITS:1  COG:sfcA KEGG:ns NR:ns ## COG: sfcA COG0281 # Protein_GI_number: 16129438 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1     565      10     574     574    1142  100.0  0
MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERA
WIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYR
RSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYT
ACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPD
VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVF
LGAGSAGCGIAEMIISQTQREGLSEEAARQKVFMVDRFGLLTDKMPNLLPFQTKLVQKRE
NLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPT
SRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGAS
RITDEMLMSASETLAQYSPLVLNGEGMVLPELKDIQKVSRAIAFAVGKMAQQQGVAVKTS
AEALQQAIDDNFWQAEYRDYRRTSI
>gi|223713584|gb|ACDM01000014.1| GENE    15     16833  -     17843   1022    336 aa, chain + ## HITS:1  COG:adhP KEGG:ns NR:ns ## COG: adhP COG1064 # Protein_GI_number: 16129437 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1     336      11     346     346     609  100.0  1e-174
MKAAVVTKDHHVDVTYKTLRSLKHGEALLKMECCGVCHTDLHVKNGDFGDKTGVILGHEG
IGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLCRSVKNAGYSVDGGMAEE
CIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKLSKIRPGQWIAIYGLGGLGNLALQY
AKNVFNAKVIAIDVNDEQLKLATEMGADLAINSHTEDAAKIVQEKTGGAHAAVVTAVAKA
AFNSAVDAVRAGGRVVAVGLPPESMSLDIPRLVLDGIEVVGSLVGTRQDLTEAFQFAAEG
KVVPKVALRPLADINTIFTEMEEGKIRGRMVIDFRH
>gi|223713584|gb|ACDM01000014.1| GENE    16     17989  -     18273    314     94 aa, chain + ## HITS:1  COG:yddM KEGG:ns NR:ns ## COG: yddM COG3093 # Protein_GI_number: 16129436 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Escherichia coli K12 # 1      94      27     120     120     169  100.0  1e-42
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
>gi|223713584|gb|ACDM01000014.1| GENE    17     18680  -     19333    919    217 aa, chain - ## HITS:1  COG:STM1568 KEGG:ns NR:ns ## COG: STM1568 COG2864 # Protein_GI_number: 16764912 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1     217       1     217     218     408   98.0  1e-114
MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFF
GIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSI
MSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSI
KGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI
>gi|223713584|gb|ACDM01000014.1| GENE    18     19326  -     20210    995    294 aa, chain - ## HITS:1  COG:fdnH KEGG:ns NR:ns ## COG: fdnH COG0437 # Protein_GI_number: 16129434 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1     294       1     294     294     612  100.0  1e-175
MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKACQVACSEWNDIRDEVG
HCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQ
YANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCP
TGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEGVGGTHVMYVLHHADQPELYHGL
PKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHYIGIGPNKEVDDDEEDHHE
>gi|223713584|gb|ACDM01000014.1| GENE    19     20223  -     22634   2709    803 aa, chain - ## HITS:1  COG:fdnG KEGG:ns NR:ns ## COG: fdnG COG0243 # Protein_GI_number: 16129433 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     803     213    1015    1015    1677   99.0  0
MTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIY
APIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQ
YDKSSWNYQFDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCE
VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ
GLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSF
YGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSC
LSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRW
LQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDE
VAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMAN
RDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPD
FGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVV
RLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIAQPEQFVEISETLAAAKGI
NNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHWGFEGVARKGYIANTLT
PNVGDANSQTPEYKAFLVNIEKA
>gi|223713584|gb|ACDM01000014.1| GENE    20     22683  -     23270    541    195 aa, chain - ## HITS:1  COG:fdnG KEGG:ns NR:ns ## COG: fdnG COG0243 # Protein_GI_number: 16129433 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     195       1     195    1015     412  100.0  1e-115
MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAKEIRNTCTYCSVGCGLL
MYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGSDK
WQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKF
ARSLGMLAVDNQARV
>gi|223713584|gb|ACDM01000014.1| GENE    21     23502  -     24383    725    293 aa, chain + ## HITS:1  COG:yddG KEGG:ns NR:ns ## COG: yddG COG0697 # Protein_GI_number: 16129432 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1     293       1     293     293     506  100.0  1e-143
MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQI
PKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNW
LIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYA
RGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHG
NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
>gi|223713584|gb|ACDM01000014.1| GENE    22     24643  -     24933    422     96 aa, chain + ## HITS:1  COG:yddL KEGG:ns NR:ns ## COG: yddL COG3203 # Protein_GI_number: 16129431 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1      96       1      96      96     173  100.0  8e-44
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL
>gi|223713584|gb|ACDM01000014.1| GENE    23     24993  -     25913    215    306 aa, chain + ## HITS:1  COG:yddK_2 KEGG:ns NR:ns ## COG: yddK_2 COG4886 # Protein_GI_number: 16129430 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Escherichia coli K12 # 81     306       1     226     226     331   99.0  1e-90
MKTITLNDHHIAHLNAKNTTKLEYLNLSNNNLLPTNDIDQLISSKHLWHVLVNGINNDPL
AQMQYWTAVRNIIDDTNEVTIDLSGLNLTTQPPGLQNFTSINLDNNQLTHFDATNYDRLV
KLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQLES
CEWLQYLNLSHNQLTDIVAGNKNELLLLDLSHNKLTSLHNDLFPNLNTLLINNNLLSEIK
IFYSNFCNVQTLNAANNQLKYINLDFLTYLPSIKSLRLDNNKITHIDTNNTSDIGTLFPI
IKQSKT
>gi|223713584|gb|ACDM01000014.1| GENE    24     26611  -     27999   1003    462 aa, chain + ## HITS:1  COG:narU KEGG:ns NR:ns ## COG: narU COG2223 # Protein_GI_number: 16129428 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Escherichia coli K12 # 1     462       1     462     462     781  100.0  0
MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNL
NKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA
VQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ
LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA
SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGA
IARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAG
LGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAHKEAVTETAAALGFISAIGAVGGFFIPQ
AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRKFSQK
>gi|223713584|gb|ACDM01000014.1| GENE    25     28081  -     31821   4013   1246 aa, chain + ## HITS:1  COG:narZ KEGG:ns NR:ns ## COG: narZ COG5013 # Protein_GI_number: 16129427 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Escherichia coli K12 # 1    1246       1    1246    1246    2613  100.0  0
MSKLLDRFRYFKQKGETFADGHGQVMHSNRDWEDSYRQRWQFDKIVRSTHGVNCTGSCSW
KIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIE
LWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKT
YGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLPPASPMTWGEQTDVPE
SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTIAITPDYSEVAKLCDQWLAPKQ
GTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGSYVPGRMIRAS
DLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLL
GQHDAVAGVAFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLAN
YGLDRGLEDENSAKDYAEIKPYTPAWGEQITGVPRQYIETIAREFADTAHKTHGRSMIIL
GAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNR
PPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQ
LGRNPLGIKAEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSS
GKGHEYMQKYLLGTESGIQGEELGASDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCL
FSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQVCVGH
LGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFT
SLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAP
ETNGHVAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHV
SYNAGYTNVHELIPWRTLSGRQQLYQDHPWMRAFGESLVAYRPPIDTRSVSEMRQIPPNG
FPEKALNFLTPHQKWGIHSTYSENLLMLTLSRGGPIVWISETDARELTIVDNDWVEVFNA
NGALTARAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGG
YAQLAWGFNYYGTVGSNRDEFIMIRKMKNVNWLDDEGRDQVQEAKK
>gi|223713584|gb|ACDM01000014.1| GENE    26     31818  -     33362   1454    514 aa, chain + ## HITS:1  COG:narY KEGG:ns NR:ns ## COG: narY COG1140 # Protein_GI_number: 16129426 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Escherichia coli K12 # 1     514       1     514     514    1100  100.0  0
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNVETKPGIGYPKNWEDQE
EWQGGWVRDVNGKIRPRLGNKMGVITKIFANPVVPQIDDYYEPFTFDYEHLHSAPEGKHI
PTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNFEAMQKEMYGQFENTFMMYLP
RLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKS
EKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDADRIEEAASTEREVDLYERQCEVFL
DPHDPSVIEEALKQGIPQNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSP
IQSYADAGGLPKSEGVLPAIESLRIPVQYLANMLSAGDTGPVLRALKRMMAMRHYMRSQT
VEGVTDTRAIDEVGLSVAQVEEMYRYLAIANYEDRFVIPTSHREMAGDAFAERNGCGFTF
GDGCHGSDSKFNLFNSSRIDAINITEVRDKAEGE
>gi|223713584|gb|ACDM01000014.1| GENE    27     33362  -     34057    821    231 aa, chain + ## HITS:1  COG:narW KEGG:ns NR:ns ## COG: narW COG2180 # Protein_GI_number: 16129425 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Escherichia coli K12 # 1     231       1     231     231     443  100.0  1e-124
MQILKVIGLLMEYPDELLWECKEDALALIRRDAPMLTDFTHNLLNAPLLDKQAEWCEVFD
RGRTTSLLLFEHVHAESRDRGQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDD
QAKEGLLNVAPILALLGGRLKQREAPWYALFDALLQLAGSSLSSDSVTKQVNSEERDDTR
QALDAVWEEEQVKFIEDNATACDSSPLNQYQRRFSQDVAPQYVDISAGGGK
>gi|223713584|gb|ACDM01000014.1| GENE    28     34054  -     34734    507    226 aa, chain + ## HITS:1  COG:ECs2068 KEGG:ns NR:ns ## COG: ECs2068 COG2181 # Protein_GI_number: 15831322 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Escherichia coli O157:H7 # 1     226       1     226     226     420  100.0  1e-117
MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGI
LGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVR
ATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNG
VAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR
>gi|223713584|gb|ACDM01000014.1| GENE    29     34813  -     35706    866    297 aa, chain + ## HITS:1  COG:yddE KEGG:ns NR:ns ## COG: yddE COG0384 # Protein_GI_number: 16129423 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Escherichia coli K12 # 1     297       1     297     297     607  100.0  1e-174
MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRI
RYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQ
GTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPD
LNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHN
VLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
>gi|223713584|gb|ACDM01000014.1| GENE    30     35802  -     36647    685    281 aa, chain - ## HITS:1  COG:nhoA KEGG:ns NR:ns ## COG: nhoA COG2162 # Protein_GI_number: 16129422 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Escherichia coli K12 # 1     281       1     281     281     566  100.0  1e-161
MTPILNHYFARINWSGAAAVNIDTLRALHLKHNCTIPFENLDVLLPREIQLDNQSPEEKL
VIARRGGYCFEQNGVFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELEEEKWI
ADVGFGGQTLTAPIRLVSDLVQTTPHGEYRLLQEGDDWVLQFNHHQHWQSMYRFDLCEQQ
QSDYVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTHYENGHAVEQRNLPDVA
SLYAVMQEQFGLGVDDAKHGFTVDELALVMAAFDTHPEAGK
>gi|223713584|gb|ACDM01000014.1| GENE    31     36820  -     37389    424    189 aa, chain + ## HITS:1  COG:yddH KEGG:ns NR:ns ## COG: yddH COG1853 # Protein_GI_number: 16129421 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 1     189      17     205     205     394  100.0  1e-110
MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKST
WTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEK
CLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFV
TSGKRVTAG
>gi|223713584|gb|ACDM01000014.1| GENE    32     37386  -     37619    185     77 aa, chain - ## HITS:1  COG:ZydcE KEGG:ns NR:ns ## COG: ZydcE COG1942 # Protein_GI_number: 15801678 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Escherichia coli O157:H7 EDL933 # 1      75      14      88      88     134  100.0  3e-32
MPHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWDAEI
APQMEALIKKPGYSMNA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:43:38 2011
 Seq name: gi|223713583|gb|ACDM01000015.1| Escherichia sp. 4_1_40B cont1.15, whole genome shotgun sequence 
 Length of sequence - 2777 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 3, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        561 -      1307    413  ## COG5433 Transposase
                               -    Prom      1342 -      1401    6.2 
                               -    Term      1369 -      1410    7.6 
     2     2 Tu  1     .       -    CDS       1489 -      1722    102  ## B21_01427 hypothetical protein
                               -    Prom      1795 -      1854    7.8 
     3     3 Tu  1     .       -    CDS       1955 -      2770    238  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713583|gb|ACDM01000015.1| GENE     1       561  -      1307    413    248 aa, chain - ## HITS:1  COG:b1458 KEGG:ns NR:ns ## COG: b1458 COG5433 # Protein_GI_number: 16129417 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Escherichia coli K12 # 1     248       1     248     248     469  100.0  1e-132
MSIQSLLDYISVTPDIRQQGKVKHKLSAILFLTVCAVIAGADEWQEIEDFGHERLEWLKK
YGDFDNGIPVDDTIARVVSNIDSLAFEKMFIEWMQECHEITDGEIIAIDGKTIRGSFDKG
KRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLYLKKNLITIDAMGCQKDI
ASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV
SNVTPELL
>gi|223713583|gb|ACDM01000015.1| GENE     2      1489  -      1722    102     77 aa, chain - ## HITS:1  COG:no KEGG:B21_01427 NR:ns ## KEGG: B21_01427 # Name: ydcD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      77      84     160     160     107   98.0  1e-22
MVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDY
YDNNLKNEVFDWIGKWS
>gi|223713583|gb|ACDM01000015.1| GENE     3      1955  -      2770    238    271 aa, chain - ## HITS:1  COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     271     412     682     682     570   99.0  1e-162
MEQLARQVEPEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHL
HQPYRLPGQQHDEESGLYYNRHRHYDPLQGRYITPDPIGLRGGWNMYQYPLNPIQVIDPM
GLDAIENMTSGGLIYAVSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNGAADAMRHCYL
MCRMTKTFGSTIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGIACGDFSAKCSDACIE
KYNTGQLFGLDGIKADNPIKAKQGSSDASNY
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:44:36 2011
 Seq name: gi|223713582|gb|ACDM01000016.1| Escherichia sp. 4_1_40B cont1.16, whole genome shotgun sequence 
 Length of sequence - 180030 bp
 Number of predicted genes - 169, with homology - 168
 Number of transcription units - 97, operones - 32 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   3/0.513   -    CDS          2 -       389    337  ## COG3209 Rhs family protein
     2     1 Op  2     .       -    CDS        462 -      1232    733  ## COG3501 Uncharacterized protein conserved in bacteria
     3     2 Op  1     .       -    CDS       2052 -      2264     93  ## B21_01423 hypothetical protein
     4     2 Op  2     .       -    CDS       2340 -      2957    459  ## COG0625 Glutathione S-transferase
                               -    Prom      2994 -      3053    4.4 
                               +    Prom      3052 -      3111    3.8 
     5     3 Tu  1     .       +    CDS       3224 -      4723   1566  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               +    Term      4861 -      4905    1.0 
                               -    Term      4720 -      4754    6.8 
     6     4 Tu  1     .       -    CDS       4836 -      5897   1326  ## COG3391 Uncharacterized conserved protein
                               -    Prom      6053 -      6112    5.5 
                               +    Prom      6051 -      6110    3.9 
     7     5 Tu  1     .       +    CDS       6139 -      8241   1469  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
                               +    Term      8248 -      8287    5.1 
                               -    Term      8157 -      8194    0.3 
     8     6 Tu  1     .       -    CDS       8277 -      8942    607  ## COG1802 Transcriptional regulators
                               -    Prom      9070 -      9129    5.5 
                               -    Term      9001 -      9035    0.5 
     9     7 Tu  1     .       -    CDS       9140 -     10177    995  ## COG2130 Putative NADP-dependent oxidoreductases
                               -    Prom     10332 -     10391    2.7 
                               +    Prom     10268 -     10327    2.3 
    10     8 Op  1   4/0.333   +    CDS      10358 -     10876    497  ## COG1247 Sortase and related acyltransferases
    11     8 Op  2     .       +    CDS      10873 -     11322    416  ## COG3238 Uncharacterized protein conserved in bacteria
    12     9 Op  1     .       -    CDS      11323 -     11556    372  ## G2583_1807 hypothetical protein
    13     9 Op  2     .       -    CDS      11642 -     11890    149  ## EC55989_1578 conserved hypothetical protein; putative inner membrane protein
                               -    Prom     11967 -     12026    3.1 
    14    10 Op  1   5/0.179   -    CDS      12202 -     13626   1351  ## COG1012 NAD-dependent aldehyde dehydrogenases
    15    10 Op  2  36/0.000   -    CDS      13648 -     14442    728  ## COG1177 ABC-type spermidine/putrescine transport system, permease component II
    16    10 Op  3  30/0.000   -    CDS      14432 -     15373   1070  ## COG1176 ABC-type spermidine/putrescine transport system, permease component I
    17    10 Op  4  13/0.000   -    CDS      15374 -     16387    893  ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components
    18    10 Op  5   3/0.513   -    CDS      16405 -     17550   1200  ## COG0687 Spermidine/putrescine-binding periplasmic protein
                               -    Prom     17692 -     17751    4.5 
    19    11 Op  1   2/0.718   -    CDS      17795 -     19201   1089  ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
    20    11 Op  2     .       -    CDS      19280 -     19717    375  ## COG1598 Uncharacterized conserved protein
                               +    Prom     19941 -     20000    4.2 
    21    12 Tu  1     .       +    CDS      20200 -     20370    196  ## JW1432 hypothetical protein
    22    13 Op  1   3/0.513   -    CDS      20462 -     22423   1700  ## COG0826 Collagenase and related proteases
                               -    Term     22435 -     22465    1.1 
    23    13 Op  2     .       -    CDS      22496 -     23032    322  ## COG1396 Predicted transcriptional regulators
    24    14 Tu  1     .       +    CDS      23124 -     24299    851  ## COG3135 Uncharacterized protein involved in benzoate metabolism
                               +    Term     24338 -     24368    1.6 
    25    15 Tu  1     .       -    CDS      24339 -     25487    157  ## COG0675 Transposase and inactivated derivatives
                               -    Prom     25548 -     25607    5.3 
                               +    Prom     25504 -     25563    3.1 
    26    16 Tu  1     .       +    CDS      25618 -     25842     70  ## COG1943 Transposase and inactivated derivatives
                               +    Term     25871 -     25920    5.0 
                               -    Term     26039 -     26070    4.1 
    27    17 Tu  1     .       -    CDS      26079 -     26747    699  ## EC55989_1562 putative lipoprotein
                               -    Prom     26832 -     26891    4.5 
                               -    Term     26830 -     26889    9.7 
    28    18 Op  1   4/0.333   -    CDS      27049 -     27642    612  ## COG0500 SAM-dependent methyltransferases
    29    18 Op  2     .       -    CDS      27639 -     28631    902  ## COG1275 Tellurite resistance protein and related permeases
                               -    Prom     28653 -     28712    4.0 
                               +    Prom     28615 -     28674    6.6 
    30    19 Tu  1     .       +    CDS      28823 -     29734    554  ## JW1424 hypothetical protein
    31    20 Op  1   1/0.846   -    CDS      29726 -     30265    934  ## PROTEIN SUPPORTED gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase
                               -    Term     30289 -     30317    1.3 
    32    20 Op  2     .       -    CDS      30328 -     30552    240  ## COG2841 Uncharacterized protein conserved in bacteria
                               +    Prom     30375 -     30434    3.8 
    33    21 Tu  1     .       +    CDS      30568 -     30771     69  ## SSON_1717 hypothetical protein
    34    22 Tu  1     .       -    CDS      30692 -     32311   1503  ## COG3131 Periplasmic glucans biosynthesis protein
                               -    Prom     32426 -     32485    3.9 
    35    23 Tu  1     .       -    CDS      32572 -     33915    983  ## COG5383 Uncharacterized protein conserved in bacteria
                               -    Prom     34053 -     34112    4.4 
                               +    Prom     34028 -     34087    4.5 
    36    24 Tu  1     .       +    CDS      34132 -     35055    468  ## COG0583 Transcriptional regulator
                               -    Term     34894 -     34935   -0.7 
    37    25 Tu  1     .       -    CDS      35093 -     36733   1164  ## COG0840 Methyl-accepting chemotaxis protein
                               -    Prom     36817 -     36876    5.7 
                               -    Term     37116 -     37144   -0.9 
    38    26 Tu  1     .       -    CDS      37353 -     37526    103  ## SSON_1723 hypothetical protein
                               -    Prom     37650 -     37709    8.1 
    39    27 Tu  1     .       -    CDS      37771 -     38301    317  ## COG3038 Cytochrome B561
                               -    Prom     38326 -     38385    2.3 
                               +    Prom     38285 -     38344    5.2 
    40    28 Tu  1     .       +    CDS      38490 -     38606    118  ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
                               +    Prom     38740 -     38799    1.9 
    41    29 Op  1     .       +    CDS      38865 -     39242    399  ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
    42    29 Op  2     .       +    CDS      39239 -     39490    282  ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
                               +    Term     39499 -     39532    4.4 
                               -    Term     39264 -     39303   -0.0 
    43    30 Tu  1     .       -    CDS      39532 -     40971   1498  ## COG1012 NAD-dependent aldehyde dehydrogenases
                               -    Prom     41080 -     41139    5.0 
    44    31 Tu  1     .       -    CDS      41168 -     41968    474  ## COG1434 Uncharacterized conserved protein
                               -    Prom     42147 -     42206    6.5 
    45    32 Tu  1     .       -    CDS      42240 -     46142   4218  ## COG1643 HrpA-like helicases
                               -    Prom     46189 -     46248    2.3 
                               +    Prom     46134 -     46193    4.0 
    46    33 Tu  1     .       +    CDS      46343 -     46948    817  ## COG1182 Acyl carrier protein phosphodiesterase
    47    34 Op  1   5/0.179   -    CDS      47002 -     48294    552  ## COG0671 Membrane-associated phospholipid phosphatase
    48    34 Op  2   3/0.513   -    CDS      48308 -     50065    942  ## COG0500 SAM-dependent methyltransferases
    49    34 Op  3   4/0.333   -    CDS      50081 -     50977    227  ## COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
    50    34 Op  4     .       -    CDS      50977 -     52683   1084  ## COG0558 Phosphatidylglycerophosphate synthase
                               -    Prom     52825 -     52884   11.4 
                               -    Term     52940 -     52982    6.4 
    51    35 Op  1   1/0.846   -    CDS      53014 -     53604    540  ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
    52    35 Op  2   2/0.718   -    CDS      53586 -     54536    782  ## COG3327 Phenylacetic acid-responsive transcriptional repressor
                               -    Prom     54565 -     54624    2.4 
    53    36 Op  1   1/0.846   -    CDS      54637 -     55950   1184  ## COG1541 Coenzyme F390 synthetase
    54    36 Op  2   1/0.846   -    CDS      55977 -     57182   1124  ## COG0183 Acetyl-CoA acetyltransferase
    55    36 Op  3   1/0.846   -    CDS      57182 -     57604    383  ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism
    56    36 Op  4   7/0.026   -    CDS      57594 -     59018   1240  ## COG1250 3-hydroxyacyl-CoA dehydrogenase
    57    36 Op  5  12/0.000   -    CDS      59023 -     59808    792  ## COG1024 Enoyl-CoA hydratase/carnithine racemase
    58    36 Op  6   1/0.846   -    CDS      59811 -     60578    703  ## COG1024 Enoyl-CoA hydratase/carnithine racemase
    59    36 Op  7   2/0.718   -    CDS      60575 -     61645    999  ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
    60    36 Op  8   4/0.333   -    CDS      61653 -     62150    492  ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme
    61    36 Op  9   5/0.179   -    CDS      62165 -     62911    692  ## COG3396 Uncharacterized conserved protein
    62    36 Op 10   5/0.179   -    CDS      62920 -     63207    349  ## COG3460 Uncharacterized enzyme of phenylacetate metabolism
    63    36 Op 11     .       -    CDS      63219 -     64148    677  ## COG3396 Uncharacterized conserved protein
                               -    Prom     64371 -     64430    7.1 
                               +    Prom     64186 -     64245    8.0 
    64    37 Tu  1     .       +    CDS      64433 -     66478   1608  ## COG1012 NAD-dependent aldehyde dehydrogenases
                               +    Term     66482 -     66537    6.7 
                               +    Prom     66504 -     66563    3.4 
    65    38 Tu  1     .       +    CDS      66726 -     68999   2440  ## COG3733 Cu2+-containing amine oxidase
                               +    Term     69018 -     69044    1.0 
                               -    Term     69006 -     69032    1.0 
    66    39 Tu  1     .       -    CDS      69057 -     70556   1133  ## COG1012 NAD-dependent aldehyde dehydrogenases
                               -    Prom     70663 -     70722    4.2 
                               +    Prom     70666 -     70725    4.1 
    67    40 Tu  1     .       +    CDS      70792 -     71697    537  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term     71702 -     71740    8.7 
                               -    Term     71678 -     71742   18.1 
    68    41 Op  1     .       -    CDS      71869 -     72195    199  ## COG3784 Uncharacterized protein conserved in bacteria
    69    41 Op  2     .       -    CDS      72203 -     72388    286  ## JW1377 predicted lipoprotein
    70    41 Op  3     .       -    CDS      72385 -     75024   2417  ## JW1376 hypothetical protein
                               -    Prom     75166 -     75225    4.4 
                               +    Prom     75132 -     75191    8.4 
    71    42 Op  1     .       +    CDS      75231 -     76220   1246  ## COG1052 Lactate dehydrogenase and related dehydrogenases
                               +    Prom     76238 -     76297    2.2 
    72    42 Op  2     .       +    CDS      76319 -     76753    201  ## PROTEIN SUPPORTED gi|163801140|ref|ZP_02195040.1| 50S ribosomal protein L25
                               -    Term     76467 -     76524    6.2 
    73    43 Tu  1     .       -    CDS      76750 -     77016    204  ## COG3042 Putative hemolysin
                               -    Prom     77116 -     77175    3.6 
                               +    Prom     77084 -     77143    6.2 
    74    44 Tu  1     .       +    CDS      77290 -     80814   3378  ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
                               +    Term     80852 -     80883    3.2 
                               +    Prom     80988 -     81047    9.2 
    75    45 Tu  1     .       +    CDS      81181 -     82314   1240  ## COG3203 Outer membrane protein (porin)
                               +    Term     82323 -     82353    2.5 
                               +    Prom     82374 -     82433    4.2 
    76    46 Tu  1     .       +    CDS      82455 -     82889    388  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
                               +    Term     82897 -     82928    2.4 
                               +    Prom     82917 -     82976    4.5 
    77    47 Tu  1     .       +    CDS      83066 -     84001    962  ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
                               +    Term     84012 -     84049    6.9 
                               -    Term     83904 -     83947   -0.8 
    78    48 Tu  1     .       -    CDS      84130 -     85428   1126  ## COG0513 Superfamily II DNA and RNA helicases
                               -    Term     85835 -     85879    2.2 
    79    49 Tu  1     .       -    CDS      85981 -     86964    763  ## COG0598 Mg2+ and Co2+ transporters
                               -    Prom     87053 -     87112    5.1 
                               +    Prom     87086 -     87145    2.3 
    80    50 Tu  1     .       +    CDS      87219 -     88451    923  ## COG2199 FOG: GGDEF domain
    81    51 Tu  1     .       -    CDS      88472 -     89035    660  ## COG2840 Uncharacterized protein conserved in bacteria
                               -    Prom     89132 -     89191    5.2 
    82    52 Tu  1     .       -    CDS      89365 -     90273    671  ## COG0583 Transcriptional regulator
                               -    Prom     90342 -     90401    2.0 
                               +    Prom     90326 -     90385    2.3 
    83    53 Op  1   3/0.513   +    CDS      90449 -     91759    999  ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase
    84    53 Op  2   4/0.333   +    CDS      91759 -     93204    974  ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase
    85    53 Op  3   2/0.718   +    CDS      93241 -     94767   1165  ## COG2978 Putative p-aminobenzoyl-glutamate transporter
    86    53 Op  4   4/0.333   +    CDS      94778 -     95293    367  ## COG0350 Methylated DNA-protein cysteine methyltransferase
                               +    Prom     95403 -     95462    6.2 
    87    54 Tu  1   7/0.026   +    CDS      95488 -     96240    784  ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
                               +    Term     96262 -     96322   10.1 
                               +    Prom     96295 -     96354    3.7 
    88    55 Tu  1     .       +    CDS      96392 -     97342   1042  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
                               +    Term     97364 -     97394    3.0 
                               -    Term     97352 -     97381    2.8 
    89    56 Tu  1     .       -    CDS      97392 -     97649    322  ## ECSP_1858 predicted inner membrane protein
                               -    Prom     97698 -     97757    1.7 
                               +    Prom     97704 -     97763    4.3 
    90    57 Tu  1     .       +    CDS      97893 -     98924    784  ## COG0668 Small-conductance mechanosensitive channel
                               +    Term     99126 -     99160    0.3 
    91    58 Tu  1     .       -    CDS      98975 -    100588   1496  ## COG4166 ABC-type oligopeptide transport system, periplasmic component
                               -    Prom    100618 -    100677    6.2 
                               -    Term    100754 -    100784    1.1 
    92    59 Tu  1     .       -    CDS     100925 -    101824    354  ## COG0583 Transcriptional regulator
                               -    Prom    101962 -    102021    3.2 
                               +    Prom    101837 -    101896    2.4 
    93    60 Op  1   1/0.846   +    CDS     101965 -    102663    704  ## COG1073 Hydrolases of the alpha/beta superfamily
    94    60 Op  2   1/0.846   +    CDS     102650 -    102907    259  ## COG1073 Hydrolases of the alpha/beta superfamily
    95    60 Op  3   1/0.846   +    CDS     102978 -    103160    170  ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases
    96    60 Op  4     .       +    CDS     103242 -    103970    422  ## COG2866 Predicted carboxypeptidase
    97    61 Tu  1     .       -    CDS     103945 -    104910    827  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
                               -    Prom    104973 -    105032    4.3 
                               +    Prom    104941 -    105000    2.3 
    98    62 Tu  1     .       +    CDS     105029 -    105535    685  ## COG2077 Peroxiredoxin
                               +    Term    105537 -    105590   11.2 
                               -    Term    105531 -    105569   10.2 
    99    63 Tu  1     .       -    CDS     105579 -    107120   1510  ## COG3283 Transcriptional regulator of aromatic amino acids metabolism
                               -    Prom    107149 -    107208    6.5 
                               -    Term    107173 -    107215    1.9 
   100    64 Op  1   9/0.000   -    CDS     107268 -    108329   1247  ## COG3768 Predicted membrane protein
   101    64 Op  2     .       -    CDS     108326 -    109723   1276  ## COG3106 Predicted ATPase
                               -    Prom    109743 -    109802    3.3 
                               +    Prom    109791 -    109850    3.8 
   102    65 Tu  1     .       +    CDS     109879 -    110877    861  ## COG1609 Transcriptional regulators
   103    66 Op  1     .       -    CDS     110988 -    111893   1067  ## B21_01307 hypothetical protein
   104    66 Op  2   3/0.513   -    CDS     111938 -    113020   1239  ## COG3839 ABC-type sugar transport systems, ATPase components
   105    66 Op  3  11/0.000   -    CDS     113034 -    113693    525  ## COG0637 Predicted phosphatase/phosphohexomutase
   106    66 Op  4   4/0.333   -    CDS     113690 -    115888   1513  ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases)
   107    66 Op  5  16/0.000   -    CDS     115954 -    116997    889  ## COG0673 Predicted dehydrogenases and related proteins
   108    66 Op  6   3/0.513   -    CDS     117019 -    117807    938  ## COG1082 Sugar phosphate isomerases/epimerases
   109    66 Op  7   5/0.179   -    CDS     117826 -    118878   1229  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
   110    66 Op  8  38/0.000   -    CDS     118909 -    119751    973  ## COG0395 ABC-type sugar transport system, permease component
   111    66 Op  9  35/0.000   -    CDS     119738 -    120619    947  ## COG1175 ABC-type sugar transport systems, permease components
   112    66 Op 10   2/0.718   -    CDS     120640 -    121932   1585  ## COG1653 ABC-type sugar transport system, periplasmic component
   113    66 Op 11   1/0.846   -    CDS     121946 -    123625   1051  ## COG0366 Glycosidases
                               -    Prom    123759 -    123818    3.9 
                               -    Term    123791 -    123824    3.6 
   114    67 Op  1     .       -    CDS     123838 -    124152    410  ## COG0607 Rhodanese-related sulfurtransferase
   115    67 Op  2     .       -    CDS     124227 -    124448    242  ## ECDH10B_1424 peripheral inner membrane phage-shock protein
   116    67 Op  3     .       -    CDS     124457 -    124816    550  ## COG1983 Putative stress-responsive transcriptional regulator
   117    67 Op  4     .       -    CDS     124816 -    125040    311  ## ECDH10B_1422 phage shock protein B
   118    67 Op  5     .       -    CDS     125094 -    125762    974  ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
                               -    Prom    125894 -    125953    3.8 
                               +    Prom    125767 -    125826    3.7 
   119    68 Tu  1     .       +    CDS     125929 -    126906    925  ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
                               +    Term    127154 -    127182   -1.0 
                               -    Term    126784 -    126819    3.1 
   120    69 Op  1   4/0.333   -    CDS     127026 -    128291   1285  ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases
   121    69 Op  2   6/0.103   -    CDS     128329 -    129609   1513  ## COG0665 Glycine/D-amino acid oxidases (deaminating)
   122    69 Op  3   4/0.333   -    CDS     129611 -    131098   1688  ## COG1012 NAD-dependent aldehyde dehydrogenases
   123    70 Op  1   1/0.846   -    CDS     131373 -    131930    509  ## COG1396 Predicted transcriptional regulators
   124    70 Op  2     .       -    CDS     131957 -    132709    217  ## COG2071 Predicted glutamine amidotransferases
                               -    Prom    132789 -    132848    4.6 
                               +    Prom    132786 -    132845    5.4 
   125    71 Tu  1     .       +    CDS     132933 -    134351   1236  ## COG0174 Glutamine synthetase
                               +    Term    134371 -    134410    1.2 
                               +    Prom    134552 -    134611    2.2 
   126    72 Tu  1     .       +    CDS     134654 -    136039   1569  ## COG0531 Amino acid transporters
                               +    Prom    136081 -    136140    3.9 
   127    73 Tu  1     .       +    CDS     136173 -    136418    296  ## Z2493 hypothetical protein
                               +    Prom    136649 -    136708    4.0 
   128    74 Op  1   8/0.000   +    CDS     136731 -    138374   1412  ## COG4166 ABC-type oligopeptide transport system, periplasmic component
   129    74 Op  2   8/0.000   +    CDS     138371 -    139336    588  ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21
   130    74 Op  3   8/0.000   +    CDS     139323 -    140213    928  ## COG4171 ABC-type antimicrobial peptide transport system, permease component
   131    74 Op  4   8/0.000   +    CDS     140213 -    141205    468  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
   132    74 Op  5   1/0.846   +    CDS     141195 -    142013    448  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
                               +    Prom    142042 -    142101    6.0 
   133    75 Tu  1     .       +    CDS     142207 -    142434     81  ## COG2852 Uncharacterized protein conserved in bacteria
                               +    Prom    142662 -    142721    3.6 
   134    76 Tu  1     .       +    CDS     142802 -    143590   1104  ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH)
                               +    Term    143598 -    143658    5.1 
                               +    Prom    143593 -    143652    2.5 
   135    77 Op  1   1/0.846   +    CDS     143734 -    144861    403  ## COG4950 Uncharacterized protein conserved in bacteria
   136    77 Op  2   4/0.333   +    CDS     144929 -    146863   2149  ## COG4776 Exoribonuclease II
                               +    Term    146874 -    146910    6.3 
                               +    Prom    146951 -    147010    6.4 
   137    78 Tu  1     .       +    CDS     147098 -    149083   1138  ## COG2200 FOG: EAL domain
                               +    Term    149154 -    149196    3.1 
                               +    Prom    149091 -    149150    6.3 
   138    79 Op  1     .       +    CDS     149231 -    149404    233  ## EC55989_1446 hypothetical protein
                               +    Prom    149406 -    149465    6.9 
   139    79 Op  2     .       +    CDS     149494 -    150243    631  ## COG1349 Transcriptional regulators of sugar metabolism
                               +    Term    150254 -    150312    4.1 
                               +    Prom    150305 -    150364    5.9 
   140    80 Tu  1     .       +    CDS     150512 -    150730    356  ## G2583_1624 hypothetical protein
                               +    Term    150824 -    150863    8.4 
                               -    Term    150816 -    150847    4.1 
   141    81 Op  1   6/0.103   -    CDS     150856 -    151182    511  ## COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins
   142    81 Op  2   7/0.026   -    CDS     151182 -    151919    660  ## COG0284 Orotidine-5'-phosphate decarboxylase
                               -    Prom    151971 -    152030    7.6 
   143    82 Op  1   8/0.000   -    CDS     152113 -    153282   1241  ## COG2956 Predicted N-acetylglucosaminyl transferase
   144    82 Op  2   5/0.179   -    CDS     153289 -    153597    201  ## PROTEIN SUPPORTED gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein
                               -    Prom    153661 -    153720    2.9 
   145    83 Tu  1     .       -    CDS     153746 -    154510    498  ## COG0671 Membrane-associated phospholipid phosphatase
                               -    Prom    154531 -    154590    4.5 
                               +    Prom    154547 -    154606    1.6 
   146    84 Tu  1     .       +    CDS     154680 -    155270    710  ## COG0807 GTP cyclohydrolase II
                               +    Term    155291 -    155342    5.6 
                               -    Term    155237 -    155273    4.1 
   147    85 Tu  1     .       -    CDS     155334 -    158009   2426  ## COG1048 Aconitase A
                               -    Prom    158059 -    158118    3.5 
                               -    Term    158133 -    158168    4.0 
   148    86 Tu  1     .       -    CDS     158173 -    158268     56  ## 
   149    87 Op  1     .       -    CDS     158382 -    158549    141  ## SSON_1865 hypothetical protein
   150    87 Op  2     .       -    CDS     158552 -    158680     63  ## EC55989_1434 hypothetical protein
                               -    Prom    158734 -    158793    4.7 
                               -    Term    158948 -    159000    9.1 
   151    88 Tu  1     .       -    CDS     159011 -    159985    888  ## COG0583 Transcriptional regulator
                               -    Prom    160052 -    160111    7.5 
                               -    Term    160133 -    160163    2.1 
   152    89 Tu  1     .       -    CDS     160195 -    162792   2871  ## COG0550 Topoisomerase IA
                               -    Prom    162954 -    163013    3.7 
                               +    Prom    162992 -    163051    4.8 
   153    90 Tu  1     .       +    CDS     163172 -    163423    417  ## ECIAI1_1292 hypothetical protein
                               +    Term    163426 -    163466    6.3 
                               -    Term    163414 -    163454    6.6 
   154    91 Tu  1     .       -    CDS     163459 -    164508   1047  ## COG0616 Periplasmic serine proteases (ClpP class)
                               -    Prom    164538 -    164597    3.6 
                               +    Prom    164617 -    164676    2.1 
   155    92 Op  1   5/0.179   +    CDS     164728 -    165486    719  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
   156    92 Op  2     .       +    CDS     165483 -    166073    707  ## COG2109 ATP:corrinoid adenosyltransferase
                               +    Term    166084 -    166117    2.5 
                               -    Term    166072 -    166104    1.5 
   157    93 Tu  1     .       -    CDS     166113 -    166988   1169  ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
                               -    Prom    167137 -    167196    2.7 
   158    94 Op  1     .       -    CDS     167199 -    169094    750  ## JW5197 predicted inner membrane protein
   159    94 Op  2   6/0.103   -    CDS     169122 -    169742    778  ## COG0009 Putative translation factor (SUA5)
   160    94 Op  3     .       -    CDS     169739 -    170620    382  ## COG0613 Predicted metal-dependent phosphoesterases (PHP family)
                               -    Prom    170699 -    170758    5.8 
                               +    Prom    170672 -    170731    6.1 
   161    95 Op  1  10/0.000   +    CDS     170894 -    172456   1603  ## COG0147 Anthranilate/para-aminobenzoate synthases component I
   162    95 Op  2  21/0.000   +    CDS     172456 -    174051   1631  ## COG0547 Anthranilate phosphoribosyltransferase
   163    95 Op  3  13/0.000   +    CDS     174055 -    175413   1184  ## COG0134 Indole-3-glycerol phosphate synthase
   164    95 Op  4  37/0.000   +    CDS     175425 -    176618   1322  ## COG0133 Tryptophan synthase beta chain
   165    95 Op  5   2/0.718   +    CDS     176618 -    177424    392  ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc
                               +    Term    177432 -    177464    5.4 
                               +    Prom    177607 -    177666    4.8 
   166    96 Op  1   3/0.513   +    CDS     177805 -    177984    220  ## COG3729 General stress protein
                               +    Term    178025 -    178064    6.2 
   167    96 Op  2   4/0.333   +    CDS     178070 -    178570    616  ## COG3685 Uncharacterized protein conserved in bacteria
   168    96 Op  3     .       +    CDS     178616 -    179122    646  ## COG3685 Uncharacterized protein conserved in bacteria
                               +    Term    179146 -    179180    6.0 
   169    97 Tu  1     .       -    CDS     179182 -    179289     56  ## COG3047 Outer membrane protein W
                               -    Prom    179378 -    179437    5.2 
Predicted protein(s)
>gi|223713582|gb|ACDM01000016.1| GENE     1         2  -       389    337    129 aa, chain - ## HITS:1  COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     129      17     145     682     258   99.0  2e-69
MSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRVTPDSLPPVEWLTY
GSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLTSTYTPAGQLQSQHLNS
LVYDRDYGW
>gi|223713582|gb|ACDM01000016.1| GENE     2       462  -      1232    733    256 aa, chain - ## HITS:1  COG:ECs0607 KEGG:ns NR:ns ## COG: ECs0607 COG3501 # Protein_GI_number: 15829861 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     253       1     253     633     490   97.0  1e-139
MSTGLRFTLEVDGLPPDAFAVVSFHLNQSLSSLFSLDLSLVSQQFLSLEFAQVLDKMAYL
TIWQGDEVQRRVKGVVTWFELGENDKNQMLYSMKVHPPLWRAGLRQNFRIFQNEDIKSIL
GTMLQENGVTEWSPLFSEPHPSREFCVQYGETDYDFLCRMAAEEGIFFYEEHAYKSTDQS
LVLCDTVRHLPESFEIPWNPNTRTEVSTLCISQFRYSAQIRPSSVVTKDYTFKRPGWAGR
FEQEGQHQDYPLTATR
>gi|223713582|gb|ACDM01000016.1| GENE     3      2052  -      2264     93     70 aa, chain - ## HITS:1  COG:no KEGG:B21_01423 NR:ns ## KEGG: B21_01423 # Name: yncH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      70       1      70      70     102  100.0  3e-21
MVCFLIYITLLFIQRVYFISSEKKLTIHIVQMFQLLSQAFYNLKMFLMMDMLGVGDAINI
NTNKNIRQVC
>gi|223713582|gb|ACDM01000016.1| GENE     4      2340  -      2957    459    205 aa, chain - ## HITS:1  COG:yncG KEGG:ns NR:ns ## COG: yncG COG0625 # Protein_GI_number: 16129413 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1     205       1     205     205     415   99.0  1e-116
MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGASRELLKTLNPLCQVPTLALEN
DEIMTETAAIALMVLDRRPDLAPPVGRAERQLFQRQLVWLVANVYPTFTFADYPERWAPD
APEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDCYLCTMRTWGPGHEWFQDNAT
NISAIADAVCQLPKLQEVLKRNEII
>gi|223713582|gb|ACDM01000016.1| GENE     5      3224  -      4723   1566    499 aa, chain + ## HITS:1  COG:ECs2057 KEGG:ns NR:ns ## COG: ECs2057 COG1113 # Protein_GI_number: 15831311 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1     499      18     516     516     918  100.0  0
MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAG
PALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAM
TGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLA
IVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG
TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV
PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATL
VVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP
GAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVRKRVAEIHSTAP
VVEEDEEKQEIVFKPETAS
>gi|223713582|gb|ACDM01000016.1| GENE     6      4836  -      5897   1326    353 aa, chain - ## HITS:1  COG:yncE KEGG:ns NR:ns ## COG: yncE COG3391 # Protein_GI_number: 16129411 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     353       1     353     353     619   99.0  1e-177
MHLRHLFSSRLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATS
QSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT
GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI
QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT
ARQRAFITDSKAAEVLVVDTRNGNILTKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID
AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL
>gi|223713582|gb|ACDM01000016.1| GENE     7      6139  -      8241   1469    700 aa, chain + ## HITS:1  COG:yncD KEGG:ns NR:ns ## COG: yncD COG1629 # Protein_GI_number: 16129410 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli K12 # 1     700       1     700     700    1379  100.0  0
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMY
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS
SVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNLGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
NAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVD
NLFDKEYVGSVIVNESNGRYYEPSPGRNYGVGMNIAWRFE
>gi|223713582|gb|ACDM01000016.1| GENE     8      8277  -      8942    607    221 aa, chain - ## HITS:1  COG:yncC KEGG:ns NR:ns ## COG: yncC COG1802 # Protein_GI_number: 16129409 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     221      20     240     240     405  100.0  1e-113
MPGTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVS
VNALSVAPAQAFTVPEVGKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQ
QAQEKGDMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPAELRE
HIENYHLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQYNR
>gi|223713582|gb|ACDM01000016.1| GENE     9      9140  -     10177    995    345 aa, chain - ## HITS:1  COG:yncB KEGG:ns NR:ns ## COG: yncB COG2130 # Protein_GI_number: 16129408 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     345      32     376     376     709  100.0  0
MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSD
EPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHP
QNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGV
AGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNT
SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMG
QWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD
>gi|223713582|gb|ACDM01000016.1| GENE    10     10358  -     10876    497    172 aa, chain + ## HITS:1  COG:yncA KEGG:ns NR:ns ## COG: yncA COG1247 # Protein_GI_number: 16129407 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Escherichia coli K12 # 1     172       1     172     172     356  100.0  1e-98
MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENG
VVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGI
ESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG
>gi|223713582|gb|ACDM01000016.1| GENE    11     10873  -     11322    416    149 aa, chain + ## HITS:1  COG:ydcZ KEGG:ns NR:ns ## COG: ydcZ COG3238 # Protein_GI_number: 16129406 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     149       1     149     149     222  100.0  2e-58
MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMA
GFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSH
GVPLRALFGPICGAILLVVGAWLVARRSF
>gi|223713582|gb|ACDM01000016.1| GENE    12     11323  -     11556    372     77 aa, chain - ## HITS:1  COG:no KEGG:G2583_1807 NR:ns ## KEGG: G2583_1807 # Name: ydcY # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      77       1      77      77     112  100.0  5e-24
MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHK
EDMEARHEQLTKGGTIL
>gi|223713582|gb|ACDM01000016.1| GENE    13     11642  -     11890    149     82 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1578 NR:ns ## KEGG: EC55989_1578 # Name: ydcX # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1      82       1      82      82     133   98.0  2e-30
MKKLDARQKMTHICARFIHLVGRPYMSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFL
SAFLVGATWPMSFPVALLFSLF
>gi|223713582|gb|ACDM01000016.1| GENE    14     12202  -     13626   1351    474 aa, chain - ## HITS:1  COG:ydcW KEGG:ns NR:ns ## COG: ydcW COG1012 # Protein_GI_number: 16129403 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     474       1     474     474     928   99.0  0
MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTP
KVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNG
LAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLT
ALKLAELAKDIFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSI
KRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKL
GAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATGHIKVITGGEKRKGNGYYY
APTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHR
VSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVKH
>gi|223713582|gb|ACDM01000016.1| GENE    15     13648  -     14442    728    264 aa, chain - ## HITS:1  COG:ydcV KEGG:ns NR:ns ## COG: ydcV COG1177 # Protein_GI_number: 16129402 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli K12 # 1     264       1     264     264     422  100.0  1e-118
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
ILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ
>gi|223713582|gb|ACDM01000016.1| GENE    16     14432  -     15373   1070    313 aa, chain - ## HITS:1  COG:ydcU KEGG:ns NR:ns ## COG: ydcU COG1176 # Protein_GI_number: 16129401 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli K12 # 1     313       1     313     313     508  100.0  1e-144
MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFD
DFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKM
KAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTL
STSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALY
LAFVKRLGAFDAL
>gi|223713582|gb|ACDM01000016.1| GENE    17     15374  -     16387    893    337 aa, chain - ## HITS:1  COG:ydcT KEGG:ns NR:ns ## COG: ydcT COG3842 # Protein_GI_number: 16129400 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1     337       1     337     337     670  100.0  0
MTYAVEFDNVSRLYGDVRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGA
ISIFGKPASNLPPWERDVNTVFQDYALFPHMSILDNVAYGLMVKGVNKKQRHAMAQEALE
KVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELKKL
QQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIEQVDSPRDLYMRPRTPFVAGFVGTSNV
FDGLMAEKLCGMTGSFALRPEHIRLNTPGELQANGTIQAVQYQGAATRFELKLNGGEKLL
VSQANMTGEELPATLTPGQQVMVSWSRDVMVPLVEER
>gi|223713582|gb|ACDM01000016.1| GENE    18     16405  -     17550   1200    381 aa, chain - ## HITS:1  COG:ydcS KEGG:ns NR:ns ## COG: ydcS COG0687 # Protein_GI_number: 16129399 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1     381       1     381     381     770  100.0  0
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKG
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
GGKFVPYSRWTQDYIAIMGGR
>gi|223713582|gb|ACDM01000016.1| GENE    19     17795  -     19201   1089    468 aa, chain - ## HITS:1  COG:ydcR KEGG:ns NR:ns ## COG: ydcR COG1167 # Protein_GI_number: 16129398 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Escherichia coli K12 # 1     468       1     468     468     920  100.0  0
MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARP
QSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPL
QQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGALEAL
NLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPV
KACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDR
HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRY
DAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLAALT
HHISIAPGKMFSTGENWSRFFRFNTAWQWGEREEQAVKQLGKLIQERL
>gi|223713582|gb|ACDM01000016.1| GENE    20     19280  -     19717    375    145 aa, chain - ## HITS:1  COG:ECs2042 KEGG:ns NR:ns ## COG: ECs2042 COG1598 # Protein_GI_number: 15831296 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     145       1     145     145     263  100.0  9e-71
MRETVEIMRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFED
NELIPLPSPLNSHDHFIEVPLSVASKVLLLNAFLQSEITQQELARRIGKPKQEITRLFNL
HHATKIDAVQLAAKALGKELSLVMV
>gi|223713582|gb|ACDM01000016.1| GENE    21     20200  -     20370    196     56 aa, chain + ## HITS:1  COG:no KEGG:JW1432 NR:ns ## KEGG: JW1432 # Name: yncJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      56      21      76      76     102  100.0  6e-21
MAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR
>gi|223713582|gb|ACDM01000016.1| GENE    22     20462  -     22423   1700    653 aa, chain - ## HITS:1  COG:ECs2039 KEGG:ns NR:ns ## COG: ECs2039 COG0826 # Protein_GI_number: 15831293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1     653      15     667     667    1354   99.0  0
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR
YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD
IRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHGALCVAYSGQCYISH
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYF
VNARKGDIGAFDSPKFIGLPVGEVVKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRAN
TVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGW
QEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTLYYARDVQINLPG
ALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAR
EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLKTLPKRKG
>gi|223713582|gb|ACDM01000016.1| GENE    23     22496  -     23032    322    178 aa, chain - ## HITS:1  COG:ydcN KEGG:ns NR:ns ## COG: ydcN COG1396 # Protein_GI_number: 16129393 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     178       1     178     178     361  100.0  1e-100
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
>gi|223713582|gb|ACDM01000016.1| GENE    24     23124  -     24299    851    391 aa, chain + ## HITS:1  COG:ydcO KEGG:ns NR:ns ## COG: ydcO COG3135 # Protein_GI_number: 16129392 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in benzoate metabolism # Organism: Escherichia coli K12 # 1     391      88     478     478     640  100.0  0
MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLT
LTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRII
PHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVI
VIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYS
APVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLL
AGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGL
TLVGIGSAFWGLIAGGVCYVVLNLIADRNRY
>gi|223713582|gb|ACDM01000016.1| GENE    25     24339  -     25487    157    382 aa, chain - ## HITS:1  COG:ydcM KEGG:ns NR:ns ## COG: ydcM COG0675 # Protein_GI_number: 16129391 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     382      21     402     402     734  100.0  0
MRRFAGACRFVFNRALARQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQ
QSLKDLERAYKNFFRKRAAFPRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNS
RQVTGVVKNVTVSQSCGKWYISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTVFEP
VNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTAVSKN
HAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLAYKQLWRGG
QVLAVPPAYTSQRCAYCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLAC
GEMVQSGRPLKQEPTEMIQATA
>gi|223713582|gb|ACDM01000016.1| GENE    26     25618  -     25842     70     74 aa, chain + ## HITS:1  COG:ECs5182 KEGG:ns NR:ns ## COG: ECs5182 COG1943 # Protein_GI_number: 15834436 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      74      22      95     143     153   97.0  6e-38
MHVHLLFVTRYRRQIFDHDATEKLRTYFSNVCADFEAELVEMDGEPDHVHLLINYPPKLA
ISSLVNSLKGVSGR
>gi|223713582|gb|ACDM01000016.1| GENE    27     26079  -     26747    699    222 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1562 NR:ns ## KEGG: EC55989_1562 # Name: ydcL # Def: putative lipoprotein # Organism: E.coli_55989 # Pathway: not_defined # 1     222       1     222     222     434  100.0  1e-120
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSF
DQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSL
IFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVI
KVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK
>gi|223713582|gb|ACDM01000016.1| GENE    28     27049  -     27642    612    197 aa, chain - ## HITS:1  COG:tehB KEGG:ns NR:ns ## COG: tehB COG0500 # Protein_GI_number: 16129389 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     197       1     197     197     403  100.0  1e-113
MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDK
NAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANM
QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDA
NGNRIKLRFATMLARKK
>gi|223713582|gb|ACDM01000016.1| GENE    29     27639  -     28631    902    330 aa, chain - ## HITS:1  COG:tehA KEGG:ns NR:ns ## COG: tehA COG1275 # Protein_GI_number: 16129388 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Escherichia coli K12 # 1     330       1     330     330     577   99.0  1e-164
MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGLVILAMIIWGLLTSAFI
ARLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFHPLAVCLFSFGVVVQLAYA
AWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALGYTDAGLVFLGAGVFSWLSLE
PVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSVNGGEGDTLAKMLFGYGLLQLLF
MLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGSGSDNGFFHTLAVPLFIFTNFIIAI
LLIRTFALLMQGKLLVRTERAVLMKAEDKE
>gi|223713582|gb|ACDM01000016.1| GENE    30     28823  -     29734    554    303 aa, chain + ## HITS:1  COG:no KEGG:JW1424 NR:ns ## KEGG: JW1424 # Name: ydcK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     303      24     326     326     591   99.0  1e-167
MLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGT
SVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQG
LTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVW
LCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPI
LLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLA
GLL
>gi|223713582|gb|ACDM01000016.1| GENE    31     29726  -     30265    934    179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase [Escherichia coli str. K-12 substr. MG1655] # 1     179       1     179     179 364  100 2e-99
MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVM
LHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDESHQGQGIISQALQALIHH
YAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAEFLNDAYDDVNLYARIIDSQ
>gi|223713582|gb|ACDM01000016.1| GENE    32     30328  -     30552    240     74 aa, chain - ## HITS:1  COG:ydcH KEGG:ns NR:ns ## COG: ydcH COG2841 # Protein_GI_number: 16129385 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 20      74       1      55      55      82  100.0  2e-16
MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKD
EMLKILQQESVKEV
>gi|223713582|gb|ACDM01000016.1| GENE    33     30568  -     30771     69     67 aa, chain + ## HITS:1  COG:no KEGG:SSON_1717 NR:ns ## KEGG: SSON_1717 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      67       1      67      67     124  100.0  1e-27
MADKVYLKYTPSDYSFNLGKNASGIVFNQTAPPEEGAEEKTINSSRGRQHTDVYPALAGN
TDTAMFH
>gi|223713582|gb|ACDM01000016.1| GENE    34     30692  -     32311   1503    539 aa, chain - ## HITS:1  COG:ydcG KEGG:ns NR:ns ## COG: ydcG COG3131 # Protein_GI_number: 16129383 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Escherichia coli K12 # 1     539      13     551     551    1130  100.0  0
MAAVCGTSGIASLFSQAAFAADSDIADGQTQRFDFSILQSMAHDLAQTAWRGAPRPLPDT
LATMTPQAYNSIQYDAEKSLWHNVENRQLDAQFFHMGMGFRRRVRMFSVDPATHLAREIH
FRPELFKYNDAGVDTKQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQY
GLSARGLAIDTYTDSKEEFPDFTAFWFDTVKPGATTFTVYALLDSASITGAYKFTIHCEK
SQVIMDVENHLYARKDIKQLGIAPMTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGE
WICRPLNNPQKLQFNAYTDNNPKGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGK
GTIGLMEIPTTGETLDNIVCFWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRT
GMGGFSEGWAPGEHYPEKWARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIE
PIDGYRIQFDWYPTSDSTDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS
>gi|223713582|gb|ACDM01000016.1| GENE    35     32572  -     33915    983    447 aa, chain - ## HITS:1  COG:ydcJ KEGG:ns NR:ns ## COG: ydcJ COG5383 # Protein_GI_number: 16129382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     447       1     447     447     873  100.0  0
MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADEL
ARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLA
RNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLEEYEQQGGFNETQAQEF
VQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP
ECGIEPKILIEGPPRREVPILLRQTSFKALEETVLFAGQKQGTHTARFGEIEQRGVALTP
KGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFPDSEFLMRQQGLAWFRYRLTPSGEAHR
QAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNASREAFEQ
ALGCPVLDEFQLYQEAEERSKRRCGLL
>gi|223713582|gb|ACDM01000016.1| GENE    36     34132  -     35055    468    307 aa, chain + ## HITS:1  COG:ydcI KEGG:ns NR:ns ## COG: ydcI COG0583 # Protein_GI_number: 16129381 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     307      48     354     354     600  100.0  1e-171
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER
GRQGAQLTLPGEQFLTHAVRVLDAINTAGRSLHRKEGLNNDVVRVGALPTAALGILPSVI
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA
IRKSMPF
>gi|223713582|gb|ACDM01000016.1| GENE    37     35093  -     36733   1164    546 aa, chain - ## HITS:1  COG:trg KEGG:ns NR:ns ## COG: trg COG0840 # Protein_GI_number: 16129380 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1     546       1     546     546     899  100.0  0
MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLWQADRDQRDVTAEIEIR
TGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESEIKQSQQGYRAYQNRPVKT
PADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHESEQIRPLDNAYTDILNKAVK
IRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKI
ASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLS
SRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMG
AISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQ
AAKEIEGLISESVRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQ
VSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLHKHSVSAEPRGAGEP
VSFATV
>gi|223713582|gb|ACDM01000016.1| GENE    38     37353  -     37526    103     57 aa, chain - ## HITS:1  COG:no KEGG:SSON_1723 NR:ns ## KEGG: SSON_1723 # Name: ydcA # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      57       1      57      57      92  100.0  4e-18
MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCNDGSISASKKTCTN
>gi|223713582|gb|ACDM01000016.1| GENE    39     37771  -     38301    317    176 aa, chain - ## HITS:1  COG:STM1639 KEGG:ns NR:ns ## COG: STM1639 COG3038 # Protein_GI_number: 16764983 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Salmonella typhimurium LT2 # 1     175       1     175     176     281   84.0  5e-76
MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL
LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP
YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRS
>gi|223713582|gb|ACDM01000016.1| GENE    40     38490  -     38606    118     38 aa, chain + ## HITS:1  COG:gapC KEGG:ns NR:ns ## COG: gapC COG0057 # Protein_GI_number: 16132227 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1      38       1      38     332      78  100.0  4e-15
MSKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSP
>gi|223713582|gb|ACDM01000016.1| GENE    41     38865  -     39242    399    125 aa, chain + ## HITS:1  COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     125     126     250     333     238   99.0  2e-63
MKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSL
VDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSVTELVS
ILGKK
>gi|223713582|gb|ACDM01000016.1| GENE    42     39239  -     39490    282     83 aa, chain + ## HITS:1  COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1      83     251     333     333     160   98.0  6e-40
MTAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTV
AWYDNEYGFVTQLIRTLEKFAKL
>gi|223713582|gb|ACDM01000016.1| GENE    43     39532  -     40971   1498    479 aa, chain - ## HITS:1  COG:aldA KEGG:ns NR:ns ## COG: aldA COG1012 # Protein_GI_number: 16129376 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     479       1     479     479     948  100.0  0
MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEW
EALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWAR
RYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEF
TPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMAT
AAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQ
FVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEG
KGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNL
NVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVYLQS
>gi|223713582|gb|ACDM01000016.1| GENE    44     41168  -     41968    474    266 aa, chain - ## HITS:1  COG:ydcF KEGG:ns NR:ns ## COG: ydcF COG1434 # Protein_GI_number: 16129375 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     266       1     266     266     550  100.0  1e-156
MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARD
QQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIE
DQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYP
GFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
AEVIHAWQTLKHDAVLIEAMESRSLR
>gi|223713582|gb|ACDM01000016.1| GENE    45     42240  -     46142   4218   1300 aa, chain - ## HITS:1  COG:hrpA KEGG:ns NR:ns ## COG: hrpA COG1643 # Protein_GI_number: 16129374 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli K12 # 20    1300       1    1281    1281    2546  100.0  0
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
>gi|223713582|gb|ACDM01000016.1| GENE    46     46343  -     46948    817    201 aa, chain + ## HITS:1  COG:acpD KEGG:ns NR:ns ## COG: acpD COG1182 # Protein_GI_number: 16129373 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Escherichia coli K12 # 1     201       1     201     201     386  100.0  1e-107
MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALR
PSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFR
YTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYG
PEMAAKAQSDAKAAIDSIVSA
>gi|223713582|gb|ACDM01000016.1| GENE    47     47002  -     48294    552    430 aa, chain - ## HITS:1  COG:ynbD_1 KEGG:ns NR:ns ## COG: ynbD_1 COG0671 # Protein_GI_number: 16129372 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli K12 # 1     342       1     342     342     652  100.0  0
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSL
DLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQL
ELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVI
TGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVS
KMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVA
MLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEH
KAMLRLWENR
>gi|223713582|gb|ACDM01000016.1| GENE    48     48308  -     50065    942    585 aa, chain - ## HITS:1  COG:ynbC_2 KEGG:ns NR:ns ## COG: ynbC_2 COG0500 # Protein_GI_number: 16129371 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 275     585       1     311     311     645  100.0  0
MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPD
TAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVL
VATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDR
QRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQID
FYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGP
SADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQ
PQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGR
YVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPR
PTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDG
KPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN
>gi|223713582|gb|ACDM01000016.1| GENE    49     50081  -     50977    227    298 aa, chain - ## HITS:1  COG:ynbB KEGG:ns NR:ns ## COG: ynbB COG4589 # Protein_GI_number: 16129370 # Func_class: R General function prediction only # Function: Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase # Organism: Escherichia coli K12 # 1     298       1     298     298     522  100.0  1e-148
MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMT
LTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILAT
GQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESN
DIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGL
LIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY
>gi|223713582|gb|ACDM01000016.1| GENE    50     50977  -     52683   1084    568 aa, chain - ## HITS:1  COG:ynbA KEGG:ns NR:ns ## COG: ynbA COG0558 # Protein_GI_number: 16129369 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli K12 # 467     568     102     203     203     223  100.0  7e-58
MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSEC
SPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTP
GGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGR
KATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDST
GTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIV
NNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGG
GHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDA
TANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGALYLPFLFLPESNA
SLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNN
LLWSIASILLLWTAINRCRSVLLMSAEI
>gi|223713582|gb|ACDM01000016.1| GENE    51     53014  -     53604    540    196 aa, chain - ## HITS:1  COG:paaY KEGG:ns NR:ns ## COG: paaY COG0663 # Protein_GI_number: 16129361 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli K12 # 1     196       1     196     196     393  100.0  1e-109
MPIYQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQD
NCVMHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAF
VKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIE
PGRKRLVFDENLRPKQ
>gi|223713582|gb|ACDM01000016.1| GENE    52     53586  -     54536    782    316 aa, chain - ## HITS:1  COG:paaX KEGG:ns NR:ns ## COG: paaX COG3327 # Protein_GI_number: 16129360 # Func_class: K Transcription # Function: Phenylacetic acid-responsive transcriptional repressor # Organism: Escherichia coli K12 # 1     316       1     316     316     627  100.0  1e-179
MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA
LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK
STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA
ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV
LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR
FGGLNIEQEALCQFIR
>gi|223713582|gb|ACDM01000016.1| GENE    53     54637  -     55950   1184    437 aa, chain - ## HITS:1  COG:paaK KEGG:ns NR:ns ## COG: paaK COG1541 # Protein_GI_number: 16129359 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Escherichia coli K12 # 1     437       1     437     437     912  100.0  0
MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDL
RKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARS
LRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDM
IMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGL
SEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVI
RYRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQL
EVNRRGHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPR
SEGKACRVFDLRNIVGA
>gi|223713582|gb|ACDM01000016.1| GENE    54     55977  -     57182   1124    401 aa, chain - ## HITS:1  COG:paaJ KEGG:ns NR:ns ## COG: paaJ COG0183 # Protein_GI_number: 16129358 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1     401       1     401     401     737  100.0  0
MREAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQA
GEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESM
SRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISRED
QDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKA
PFRANGVITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGVEPRLMGLGPV
PATRRVLERAGLSIHDMDVIELNEAFAAQALGVLRELGLPDDAPHVNPNGGAIALGHPLG
MSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMILERV
>gi|223713582|gb|ACDM01000016.1| GENE    55     57182  -     57604    383    140 aa, chain - ## HITS:1  COG:paaI KEGG:ns NR:ns ## COG: paaI COG2050 # Protein_GI_number: 16129357 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1     140       1     140     140     255  100.0  2e-68
MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLA
DTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQK
TVALFRGKSHRIGGTITGEA
>gi|223713582|gb|ACDM01000016.1| GENE    56     57594  -     59018   1240    474 aa, chain - ## HITS:1  COG:ydbU KEGG:ns NR:ns ## COG: ydbU COG1250 # Protein_GI_number: 16129356 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 1     474       2     475     475     920  100.0  0
MINVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKL
TAETCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTS
SISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPV
RCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDV
NFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDS
FSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNP
DSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASEQDIDTAMRL
GVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYES
>gi|223713582|gb|ACDM01000016.1| GENE    57     59023  -     59808    792    261 aa, chain - ## HITS:1  COG:paaG KEGG:ns NR:ns ## COG: paaG COG1024 # Protein_GI_number: 16129355 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1     261       2     262     262     489  100.0  1e-138
MEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFC
AGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGG
DIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMI
WQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRS
ADYREGVSAFLAKRSPQFTGK
>gi|223713582|gb|ACDM01000016.1| GENE    58     59811  -     60578    703    255 aa, chain - ## HITS:1  COG:ydbS KEGG:ns NR:ns ## COG: ydbS COG1024 # Protein_GI_number: 16129354 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1     255       1     255     255     435  100.0  1e-122
MSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFA
AGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAG
ENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPS
DLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEG
ISAFLQKRTPDFKGR
>gi|223713582|gb|ACDM01000016.1| GENE    59     60575  -     61645    999    356 aa, chain - ## HITS:1  COG:paaE KEGG:ns NR:ns ## COG: paaE COG1018 # Protein_GI_number: 16129353 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1     356       1     356     356     715  100.0  0
MTTFHSLTVAKVESETRDAVTITFAVPQPLQEAYRFRPGQHLTLKASFDGEELRRCYSIC
RSYLPGEISVAVKAIEGGRFSRYAREHIRQGMTLEVMVPQGHFGYQPQAERQGRYLAIAA
GSGITPMLAIIATTLQTEPESQFTLIYGNRTSQSMMFRQALADLKDKYPQRLQLLCIFSQ
ETLDSDLLHGRIDGEKLQSLGASLINFRLYDEAFICGPAAMMDDAETALKALGMPDKTIH
LERFNTPGTRVKRSVNVQSDGQKVTVRQDGRDREIVLNADDESILDAALRQGADLPYACK
GGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVDFDAKGMA
>gi|223713582|gb|ACDM01000016.1| GENE    60     61653  -     62150    492    165 aa, chain - ## HITS:1  COG:paaD KEGG:ns NR:ns ## COG: paaD COG2151 # Protein_GI_number: 16129352 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Escherichia coli K12 # 1     165       3     167     167     327   99.0  7e-90
MQRLATIAPPQVHEIWALLSQIPDPEIPVLTITDLGMVRNVTQMGEGWVIGFTPTYSGCP
ATEHLIGAIREAMTTNGFTPVQVVLQLDPAWTTDWMTPDARERLREYGISPPTGHSCHAH
LPPEVRCPRCASVHTTLISEFGSTACKALYRCDSCREPFDYFKCI
>gi|223713582|gb|ACDM01000016.1| GENE    61     62165  -     62911    692    248 aa, chain - ## HITS:1  COG:ydbP KEGG:ns NR:ns ## COG: ydbP COG3396 # Protein_GI_number: 16129351 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     248       1     248     248     487  100.0  1e-138
MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELA
GEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLA
AISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALS
EEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQ
RVLPGQQW
>gi|223713582|gb|ACDM01000016.1| GENE    62     62920  -     63207    349     95 aa, chain - ## HITS:1  COG:ynbF KEGG:ns NR:ns ## COG: ynbF COG3460 # Protein_GI_number: 16129350 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme of phenylacetate metabolism # Organism: Escherichia coli K12 # 1      95       1      95      95     189  100.0  8e-49
MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI
VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM
>gi|223713582|gb|ACDM01000016.1| GENE    63     63219  -     64148    677    309 aa, chain - ## HITS:1  COG:ydbO KEGG:ns NR:ns ## COG: ydbO COG3396 # Protein_GI_number: 16129349 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     309       1     309     309     632  100.0  0
MTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLR
RKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGV
IGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQML
QDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTV
PDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHA
QKQHARKVA
>gi|223713582|gb|ACDM01000016.1| GENE    64     64433  -     66478   1608    681 aa, chain + ## HITS:1  COG:maoC_1 KEGG:ns NR:ns ## COG: maoC_1 COG1012 # Protein_GI_number: 16129348 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     500       1     500     500     935  100.0  0
MQQLASFLSGTWQSGRGRSRLIHHAISGEALWEVTSEGLDMAAARQFAIEKGAPALRAMT
FIERAAMLKAVAKHLLSEKERFYALSAQTGATRADSWVDIEGGIGTLFTYASLGSRELPD
DTLWPEDELIPLSKEGGFAARHLLTSKSGVAVHINAFNFPCWGMLEKLAPTWLGGMPAII
KPATATAQLTQAMVKSIVDSGLVPEGAISLICGSAGDLLDHLDSQDVVTFTGSAATGQML
RVQPNIVAKSIPFTMEADSLNCCVLGEDVTPDQPEFALFIREVVREMTTKAGQKCTAIRR
IIVPQALVNAVSDALVARLQKVVVGDPAQEGVKMGALVNAEQRADVQEKVNILLAAGCEI
RLGGQADLSAAGAFFPPTLLYCPQPDETPAVHATEAFGPVATLMPAQNQRHALQLACAGG
GSLAGTLVTADPQIARQFIADAARTHGRIQILNEESAKESTGHGSPLPQLVHGGPGRAGG
GEELGGLRAVKHYMQRTAVQGSPTMLAAISKQWVRGAKVEEDRIHPFRKYFEELQPGDSL
LTPRRTMTEADIVNFACLSGDHFYAHMDKIAAAESIFGERVVHGYFVLSAAAGLFVDAGV
GPVIANYGLESLRFIEPVKPGDTIQVRLTCKRKTLKKQRSAEEKPTGVVEWAVEVFNQHQ
TPVALYSILTLVARQHGDFVD
>gi|223713582|gb|ACDM01000016.1| GENE    65     66726  -     68999   2440    757 aa, chain + ## HITS:1  COG:tynA KEGG:ns NR:ns ## COG: tynA COG3733 # Protein_GI_number: 16129347 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cu2+-containing amine oxidase # Organism: Escherichia coli K12 # 1     757       1     757     757    1540  100.0  0
MGSPSLYSARKTTLALAVALSFAWQAPVFAHGGEAHMVPMDKTLKEFGADVQWDDYAQLF
TLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSDTFINDVFQSGLDQTFQVE
KRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPR
KADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVK
KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL
EQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDF
HLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMG
TLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVST
ERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTR
YGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNI
GNEQDAAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHR
LSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHV
ARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKDK
>gi|223713582|gb|ACDM01000016.1| GENE    66     69057  -     70556   1133    499 aa, chain - ## HITS:1  COG:feaB KEGG:ns NR:ns ## COG: feaB COG1012 # Protein_GI_number: 16129346 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     499       2     500     500    1001  100.0  0
MTEPHVAVLSQVQQFLDRQHGLYIDGRPGPAQSEKRLAIFDPATGQEIASTADANEADVD
NAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKSIAISRAFE
VGCTLNWMRYTAGLTTKIAGKTLDLSIPLPQGARYQAWTRKEPVGVVAGIVPWNFPLMIG
MWKVMPALAAGCSIVIKPSETTPLTMLRVAELASEAGIPDGVFNVVTGSGAVCGAALTSH
PHVAKISFTGSTATGKGIARTAADHLTRVTLELGGKNPAIVLKDADPQWVIEGLMTGSFL
NQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQVGPGMSPVAQINPLVSRAHCDKVCSF
LDDAQAQQAELIRGSNGPAGEGYYVAPTLVVNPDAKLRLTREEVFGPVVNLVRVADGEEA
LQLANDTEYGLTASVWTQNLSQALEYSDRLQAGTVWVNSHTLIDANLPFGGMKQSGTGRD
FGPDWLDGWCETKSVCVRY
>gi|223713582|gb|ACDM01000016.1| GENE    67     70792  -     71697    537    301 aa, chain + ## HITS:1  COG:feaR KEGG:ns NR:ns ## COG: feaR COG2207 # Protein_GI_number: 16129345 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     301       1     301     301     611   99.0  1e-175
MNPAVDNEFQQWLSQINQVCGNFTGRLLTERYTGVLDTHFAKGLKLSTVTTSGVNLSRTW
QEVKGSDDAWFYTVFQLSGQAIMEQDERQVQIGAGDITLLDASRPCSLYWQESSKQISLL
LPRTLLEQYFPHQKPVCAERLDADLPMVQLSHRLLQESMNNPALSETESEAALQAMVCLL
RPVLHQRESVQPRRERQFQKVVTLIDDNIREEILRPEWIAGETGMSVRSLYRMFADKGLV
VAQYIRNRRLDFCADAIRHAADDEKLAGIGFHWGFSDQSHFSTVFKQRFGMTPGEYRRKF
R
>gi|223713582|gb|ACDM01000016.1| GENE    68     71869  -     72195    199    108 aa, chain - ## HITS:1  COG:ydbL KEGG:ns NR:ns ## COG: ydbL COG3784 # Protein_GI_number: 16129344 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     108       3     110     110     197  100.0  5e-51
MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAE
RKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF
>gi|223713582|gb|ACDM01000016.1| GENE    69     72203  -     72388    286     61 aa, chain - ## HITS:1  COG:no KEGG:JW1377 NR:ns ## KEGG: JW1377 # Name: ynbE # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1      61       1      61      61     101  100.0  1e-20
MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIIIKADKDVEELLETRSDL
F
>gi|223713582|gb|ACDM01000016.1| GENE    70     72385  -     75024   2417    879 aa, chain - ## HITS:1  COG:no KEGG:JW1376 NR:ns ## KEGG: JW1376 # Name: ydbH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     879       1     879     879    1696  100.0  0
MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRIALDESPRITRKGLIIP
DLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKLPQTEQSPAAPKTLAQWQA
MLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGEKVKFQGQLKGQQLTVSELDV
VAFENQPPVKLVGEFAMPLVPDGLPVSGHATATLNLPQEPSLVDAELDWQENSGQLIVLA
RDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLSGRLGVKVDNWQAGLENALVSGRLS
VLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTGEAKQADLILYARLPAQLSGSLSDPTL
TFEPGALLRSKGRVIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMD
GLANDFLPDAGRWQWRYWGKGSFTPMNATWDVAGKGEWHDSTITLTDLSTGFDQLQYGTM
TVEKPRLILDKPIVWVRDAQHPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYF
LFKGDLHAGEIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQV
AFSAAPEQGFRAGGHGVLKGGSAWMPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAE
VINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL
SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVK
DNMTAGSAINWLRYMEISRSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEEN
IFTLWRSLRFGDNLQAWLEQNARLPGNDCPQGKECEEKQ
>gi|223713582|gb|ACDM01000016.1| GENE    71     75231  -     76220   1246    329 aa, chain + ## HITS:1  COG:ldhA KEGG:ns NR:ns ## COG: ldhA COG1052 # Protein_GI_number: 16129341 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1     329       1     329     329     668  100.0  0
MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANGCEAVCIFVNDDGSRPV
LEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRI
HRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAA
ALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDS
QAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLT
AEALTSISQTTLQNLSNLEKGETCPNELV
>gi|223713582|gb|ACDM01000016.1| GENE    72     76319  -     76753    201    144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801140|ref|ZP_02195040.1| 50S ribosomal protein L25 [Vibrio campbellii AND4] # 1     144       1     147     147 82  29 2e-14
MRTTMKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKPVTSDKNPPEISF
GEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELDNTISEMLKEGAQVD
LTANQLTLATAKQTLTYKLADLMN
>gi|223713582|gb|ACDM01000016.1| GENE    73     76750  -     77016    204     88 aa, chain - ## HITS:1  COG:STM1649 KEGG:ns NR:ns ## COG: STM1649 COG3042 # Protein_GI_number: 16764993 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Salmonella typhimurium LT2 # 38      88       1      51      51      63   92.0  1e-10
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLD
GTAIGMCALPNGKRCSEQSLAAGSCGSY
>gi|223713582|gb|ACDM01000016.1| GENE    74     77290  -     80814   3378   1174 aa, chain + ## HITS:1  COG:ECs2000_1 KEGG:ns NR:ns ## COG: ECs2000_1 COG0674 # Protein_GI_number: 15831254 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Escherichia coli O157:H7 # 1     411       1     411     411     832   99.0  0
MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
>gi|223713582|gb|ACDM01000016.1| GENE    75     81181  -     82314   1240    377 aa, chain + ## HITS:1  COG:ompN KEGG:ns NR:ns ## COG: ompN COG3203 # Protein_GI_number: 16129338 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     377       1     377     377     620  100.0  1e-177
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLG
FKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMY
DIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAS
NGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL
MSKGRDLHAAGGADNPAGVDDKDLVKYADIGATYYFNKNMSTYVDYKINLLDEDDSFYAA
NGISTDDIVALGLVYQF
>gi|223713582|gb|ACDM01000016.1| GENE    76     82455  -     82889    388    144 aa, chain + ## HITS:1  COG:ynaF KEGG:ns NR:ns ## COG: ynaF COG0589 # Protein_GI_number: 16129337 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1     144      25     168     168     259  100.0  1e-69
MNRTILVPIDISDSELTQRVISHVEEEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPA
MDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDI
TTYLLGSNAAAVVRHAECSVLVVR
>gi|223713582|gb|ACDM01000016.1| GENE    77     83066  -     84001    962    311 aa, chain + ## HITS:1  COG:ydaO KEGG:ns NR:ns ## COG: ydaO COG0037 # Protein_GI_number: 16129305 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Escherichia coli K12 # 1     311       1     311     311     640   98.0  0
MSQNQEISKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILR
NLQQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKT
TCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDG
KHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIE
TMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGDLAFDREEIPLQPACWQPEEDENQL
DELRLNVVEVK
>gi|223713582|gb|ACDM01000016.1| GENE    78     84130  -     85428   1126    432 aa, chain - ## HITS:1  COG:dbpA KEGG:ns NR:ns ## COG: dbpA COG0513 # Protein_GI_number: 16129304 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1     432      26     457     457     845  100.0  0
MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELAD
QVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLD
ALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAI
EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVG
QSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH
VHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATL
CIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGK
IKGKTCRVRLLK
>gi|223713582|gb|ACDM01000016.1| GENE    79     85981  -     86964    763    327 aa, chain - ## HITS:1  COG:ECs1926 KEGG:ns NR:ns ## COG: ECs1926 COG0598 # Protein_GI_number: 15831180 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Escherichia coli O157:H7 # 1     327       1     327     327     667  100.0  0
MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLHLNYVHHDSAQWLATTP
LLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPDQLVAMRVYMDGRLIVSTR
QRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSEFIEQLHDKIIDLEDNLLDQQ
IPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDQRRRMQDIADRLGRGLDE
IDACIARTGVMADEIAQVMQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGGGWQ
FGFSIFCILLVVLIGGVALWLHRSKWL
>gi|223713582|gb|ACDM01000016.1| GENE    80     87219  -     88451    923    410 aa, chain + ## HITS:1  COG:ydaM_3 KEGG:ns NR:ns ## COG: ydaM_3 COG2199 # Protein_GI_number: 16129302 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 241     410       1     170     170     346  100.0  6e-95
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPK
YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRS
ANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEIN
MLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT
EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHIND
LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVA
KVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
>gi|223713582|gb|ACDM01000016.1| GENE    81     88472  -     89035    660    187 aa, chain - ## HITS:1  COG:ydaL KEGG:ns NR:ns ## COG: ydaL COG2840 # Protein_GI_number: 16129301 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     187       1     187     187     378  100.0  1e-105
MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQ
PLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLII
HGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWE
RHAKRSR
>gi|223713582|gb|ACDM01000016.1| GENE    82     89365  -     90273    671    302 aa, chain - ## HITS:1  COG:ECs1923 KEGG:ns NR:ns ## COG: ECs1923 COG0583 # Protein_GI_number: 15831177 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     302       1     302     302     583  100.0  1e-166
MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVT
LTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQ
HPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHP
AIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDF
LSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYL
QS
>gi|223713582|gb|ACDM01000016.1| GENE    83     90449  -     91759    999    436 aa, chain + ## HITS:1  COG:ydaJ KEGG:ns NR:ns ## COG: ydaJ COG1473 # Protein_GI_number: 16129299 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Escherichia coli K12 # 1     436       6     441     441     778  100.0  0
MESLNQFVNSLAPKLSHWRRDFHHYAESGWVEFRTATLVAEELHQLGYSLALGREVVNES
SRMGLPDEFTLQREFERARQQGALAQWIAAFEGGFTGIVATLDTGRPGPVMAFRVDMDAL
DLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGLAHTLKQFESGLHGVIKLIFQ
PAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTVVCGSDNFMATTKFDAHFTGTAA
HAGAKPEDGHNALLAAAQATLALHAIAPHSEGASRVNVGVMQAGSGRNVVPASALLKVET
RGASDVINQYVFDRAQQAIQGAATMYGVGVETRLMGAATASSPSPQWVAWLQSQAAQVAG
VNQAIERVEAPAGSEDATLMMARVQQHQGQASYVVFGTQLAAGHHNEKFDFDEQVLAIAV
ETLARTALNFPWTRGI
>gi|223713582|gb|ACDM01000016.1| GENE    84     91759  -     93204    974    481 aa, chain + ## HITS:1  COG:abgB KEGG:ns NR:ns ## COG: abgB COG1473 # Protein_GI_number: 16129298 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Escherichia coli K12 # 1     481       1     481     481     962  100.0  0
MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGN
IPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFA
AAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFN
TRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN
SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSY
LPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVF
ALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQ
GRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPL
K
>gi|223713582|gb|ACDM01000016.1| GENE    85     93241  -     94767   1165    508 aa, chain + ## HITS:1  COG:abgT KEGG:ns NR:ns ## COG: abgT COG2978 # Protein_GI_number: 16129297 # Func_class: H Coenzyme transport and metabolism # Function: Putative p-aminobenzoyl-glutamate transporter # Organism: Escherichia coli K12 # 13     508      15     510     510     856  100.0  0
MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTTAILSAFGVSAKNPTDG
TPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAGLAERVGLLPALMVKMASH
VNARYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVGRHPVAGLLAAIAGVGCGFTA
NLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMASSVVVLTIVGGLITDKIIEPRL
GQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPQNGILRDPINHTVMPSPF
IKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMF
NWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSAIWSILAPIFVPMF
MLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLI
FLVVWLLMLLAWYLVGLPIGPGIYPRLS
>gi|223713582|gb|ACDM01000016.1| GENE    86     94778  -     95293    367    171 aa, chain + ## HITS:1  COG:ogt KEGG:ns NR:ns ## COG: ogt COG0350 # Protein_GI_number: 16129296 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Escherichia coli K12 # 1     171       1     171     171     348  100.0  2e-96
MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDIHYRKEGYERISATNPG
GLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPCGQVMHYGQLAEQLGRPGA
ARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKEWLLRHEGYLLL
>gi|223713582|gb|ACDM01000016.1| GENE    87     95488  -     96240    784    250 aa, chain + ## HITS:1  COG:ECs1915 KEGG:ns NR:ns ## COG: ECs1915 COG0664 # Protein_GI_number: 15831169 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 1     250       1     250     250     501  100.0  1e-142
MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFK
AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETSM
VCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRR
FAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENNDALA
QLAGHTRNVA
>gi|223713582|gb|ACDM01000016.1| GENE    88     96392  -     97342   1042    316 aa, chain + ## HITS:1  COG:ECs1914 KEGG:ns NR:ns ## COG: ECs1914 COG0589 # Protein_GI_number: 15831168 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1     316       1     316     316     634  100.0  0
MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDFSYEMTTLLSPDERTAM
RQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQEVISGGHDLVLKMAHQHD
RLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAVNLASEEPYHNALNEKLVKET
IELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGINE
NMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIK
PDQYQTPVELDDEEDD
>gi|223713582|gb|ACDM01000016.1| GENE    89     97392  -     97649    322     85 aa, chain - ## HITS:1  COG:no KEGG:ECSP_1858 NR:ns ## KEGG: ECSP_1858 # Name: ynaJ # Def: predicted inner membrane protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      85       1      85      85     132  100.0  4e-30
MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI
FVYSLVFTVLLAIPLGIYFLGGEEQ
>gi|223713582|gb|ACDM01000016.1| GENE    90     97893  -     98924    784    343 aa, chain + ## HITS:1  COG:ECs1912 KEGG:ns NR:ns ## COG: ECs1912 COG0668 # Protein_GI_number: 15831166 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1     343       1     343     343     672  100.0  0
MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHAVQFLIYTIIISAVGSI
INYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSR
IIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFS
IGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTT
IGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLNIMVYCFTKTTVWA
EWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMDNITPPEQGR
>gi|223713582|gb|ACDM01000016.1| GENE    91     98975  -    100588   1496    537 aa, chain - ## HITS:1  COG:mppA KEGG:ns NR:ns ## COG: mppA COG4166 # Protein_GI_number: 16129290 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     537       8     544     544    1065  100.0  0
MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQ
VIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQ
RLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNL
TANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQ
KVTFLPINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQ
KGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEEL
NAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTY
IDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVK
ARNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH
>gi|223713582|gb|ACDM01000016.1| GENE    92    100925  -    101824    354    299 aa, chain - ## HITS:1  COG:ycjZ KEGG:ns NR:ns ## COG: ycjZ COG0583 # Protein_GI_number: 16129289 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     299       1     299     299     569  100.0  1e-162
MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP
TEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH
PEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV
PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG
LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV
>gi|223713582|gb|ACDM01000016.1| GENE    93    101965  -    102663    704    232 aa, chain + ## HITS:1  COG:ycjY KEGG:ns NR:ns ## COG: ycjY COG1073 # Protein_GI_number: 16129288 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1     224       6     229     310     431  100.0  1e-121
MNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEK
GFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAG
YTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEY
AIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLKLRYFAQP
>gi|223713582|gb|ACDM01000016.1| GENE    94    102650  -    102907    259     85 aa, chain + ## HITS:1  COG:ECs1909 KEGG:ns NR:ns ## COG: ECs1909 COG1073 # Protein_GI_number: 15831163 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1      85     226     310     310     167   98.0  4e-42
MRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANH
MDLYDGKAYVAEAISVLAPFFEETL
>gi|223713582|gb|ACDM01000016.1| GENE    95    102978  -    103160    170     60 aa, chain + ## HITS:1  COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1      46       9      54     220      94  100.0  3e-20
MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR
>gi|223713582|gb|ACDM01000016.1| GENE    96    103242  -    103970    422    242 aa, chain + ## HITS:1  COG:ECs1905 KEGG:ns NR:ns ## COG: ECs1905 COG2866 # Protein_GI_number: 15831159 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Escherichia coli O157:H7 # 1     242      21     262     262     489  100.0  1e-138
MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLILAGTHGDENSSVVTLS
CALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAE
ERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPLACIEDPRHSELGEWLAQAFE
LPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLFAMANLLRWHPKDAIR
PS
>gi|223713582|gb|ACDM01000016.1| GENE    97    103945  -    104910    827    321 aa, chain - ## HITS:1  COG:ycjG KEGG:ns NR:ns ## COG: ycjG COG4948 # Protein_GI_number: 16129286 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1     321      15     335     335     594  100.0  1e-170
MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGECTPYPRYGESDASVMA
QIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDLAARRQQQSLADLIGITLPETVI
TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMVAIRTAVPDATLIVDANES
WRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADESCHTRSNLKALKGR
YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVSFADLDG
PTWLAVDVEPALQFTTGELHL
>gi|223713582|gb|ACDM01000016.1| GENE    98    105029  -    105535    685    168 aa, chain + ## HITS:1  COG:ECs1903 KEGG:ns NR:ns ## COG: ECs1903 COG2077 # Protein_GI_number: 15831157 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1     168       1     168     168     310  100.0  9e-85
MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGV
CAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGV
AIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAVLKA
>gi|223713582|gb|ACDM01000016.1| GENE    99    105579  -    107120   1510    513 aa, chain - ## HITS:1  COG:tyrR KEGG:ns NR:ns ## COG: tyrR COG3283 # Protein_GI_number: 16129284 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of aromatic amino acids metabolism # Organism: Escherichia coli K12 # 1     513       1     513     513    1014  100.0  0
MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR
IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL
RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV
MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK
DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI
GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL
NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK
NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY
PSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE
>gi|223713582|gb|ACDM01000016.1| GENE   100    107268  -    108329   1247    353 aa, chain - ## HITS:1  COG:ycjF KEGG:ns NR:ns ## COG: ycjF COG3768 # Protein_GI_number: 16129283 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     353       1     353     353     660  100.0  0
MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDEAQEEEGQVEAVMDAAL
RPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVALGGCAAGALIIGAGVGSVV
TEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHE
TQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLIN
RIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIG
AGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRRQLIGQVKETLQKGKTPSEK
>gi|223713582|gb|ACDM01000016.1| GENE   101    108326  -    109723   1276    465 aa, chain - ## HITS:1  COG:ycjX KEGG:ns NR:ns ## COG: ycjX COG3106 # Protein_GI_number: 16129282 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1     465       1     465     465     962  100.0  0
MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSAVRE
ERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGVSEIRLALRFKSNDSLLRH
FKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLNGQRGEWSAKWRMMSEGLDP
LAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVDTWG
ESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQAFN
DMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHANMVSLLQQLIQD
AWQNAAFEGISMDCLGLASVQATTSGIIDVNGEKIPALRGNRLSDGAPLTVYPGEVPARL
PGQAFWDKQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKLR
>gi|223713582|gb|ACDM01000016.1| GENE   102    109879  -    110877    861    332 aa, chain + ## HITS:1  COG:ycjW KEGG:ns NR:ns ## COG: ycjW COG1609 # Protein_GI_number: 16129281 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     332       1     332     332     638  100.0  0
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGF
DAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQK
MIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIE
SGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLS
QSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQ
ELGQQSCELLFRLISGKPSPQNITVATHMTLK
>gi|223713582|gb|ACDM01000016.1| GENE   103    110988  -    111893   1067    301 aa, chain - ## HITS:1  COG:no KEGG:B21_01307 NR:ns ## KEGG: B21_01307 # Name: ompG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     301       1     301     301     596  100.0  1e-169
MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAA
NGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYV
DEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQY
TFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSN
WDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYS
F
>gi|223713582|gb|ACDM01000016.1| GENE   104    111938  -    113020   1239    360 aa, chain - ## HITS:1  COG:ECs1897 KEGG:ns NR:ns ## COG: ECs1897 COG3839 # Protein_GI_number: 15831151 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1     360       1     360     360     710   98.0  0
MAQLSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGD
LLIDGKRMNDVPAKARNIAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQ
ILGLREYLKRKPEALSGGQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISKL
HQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQVGAPKTVYNQPANMFVSGFIGSPAM
NFIRGTIDGDKFVTETLKLTIPEEKLAVLKTQESLHKPIVMGIRPEDIHPDAQEENNISA
KISVAELTGAEFMLYTTVGGHELVVRAGALNDYHAGENITIHFDMTKCHFFDAETEIAIR
>gi|223713582|gb|ACDM01000016.1| GENE   105    113034  -    113693    525    219 aa, chain - ## HITS:1  COG:ycjU KEGG:ns NR:ns ## COG: ycjU COG0637 # Protein_GI_number: 16129278 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1     219       1     219     219     425  100.0  1e-119
MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHG
GKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLN
APTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAI
NASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV
>gi|223713582|gb|ACDM01000016.1| GENE   106    113690  -    115888   1513    732 aa, chain - ## HITS:1  COG:ycjT KEGG:ns NR:ns ## COG: ycjT COG1554 # Protein_GI_number: 16129277 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Escherichia coli K12 # 1     732      24     755     755    1491  100.0  0
MAQGNGYLGLRASHEEDYTRQTRGMYLAGLYHRAGKGEINELVNLPDVVGMEIAINGEVF
SLSHEAWQRELDFASGELRRNVVWRTSNGSGYTIASRRFVSADQLPLIALEITITPLDAD
ASVLISTGIDATQTNHGRQHLDETQVRVFGQHLMQGSYTTQDGRSDVAISCCCKVSGDVQ
QCYTAKERRLLQHTSAQLHAGETMTLQKLVWIDWRDDRQAALDEWGSASLRQLEMCAQQS
YDQLLAASTENWRQWWQKRRITVNGGEAHDQQALDYALYHLRIMTPAHDERSSIAAKGLT
GEGYKGHVFWDTEVFLLPFHLFSDPTVARSLLRYRWHNLPGAQEKARRNGWQGALFPWES
ARSGEEETPEFAAINIRTGLRQKVASAQAEHHLVADIAWAVIQYWQTTGDESFIAHEGMA
LLLETAKFWISRAVRVNDRLEIHDVIGPDEYTEHVNNNAYTSYMARYNVQQALNIARQFG
CSDDAFIHRAEMFLKELWMPEIQPDGVLPQDDSFMAKPAINLAKYKAAAGKQTILLDYSR
AEVNEMQILKQADVVMLNYMLPEQFSAASCLANLQFYEPRTIHDSSLSKAIHGIVAARCG
LLTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIWLGAIQGFAGVSVRDGELHLNPAL
PEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSLRLNGQLITVAEESVFCLGDFILP
FNGTATKHQEDE
>gi|223713582|gb|ACDM01000016.1| GENE   107    115954  -    116997    889    347 aa, chain - ## HITS:1  COG:ycjS KEGG:ns NR:ns ## COG: ycjS COG0673 # Protein_GI_number: 16129276 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1     347       5     351     351     731   99.0  0
MTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDP
QAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGK
VLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLI
DIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFH
NGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMADDNR
HLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
>gi|223713582|gb|ACDM01000016.1| GENE   108    117019  -    117807    938    262 aa, chain - ## HITS:1  COG:ycjR KEGG:ns NR:ns ## COG: ycjR COG1082 # Protein_GI_number: 16129275 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Escherichia coli K12 # 1     262       4     265     265     546  100.0  1e-155
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACG
GYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDG
DRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDF
YHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
GRIRAEDPAQAYRDSLAWLRTC
>gi|223713582|gb|ACDM01000016.1| GENE   109    117826  -    118878   1229    350 aa, chain - ## HITS:1  COG:ycjQ KEGG:ns NR:ns ## COG: ycjQ COG1063 # Protein_GI_number: 16129274 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     350       1     350     350     700  100.0  0
MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEW
QMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAV
NNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRA
GASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADAL
QSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRI
EETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF
>gi|223713582|gb|ACDM01000016.1| GENE   110    118909  -    119751    973    280 aa, chain - ## HITS:1  COG:ycjP KEGG:ns NR:ns ## COG: ycjP COG0395 # Protein_GI_number: 16129273 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Escherichia coli K12 # 1     280       1     280     280     459   99.0  1e-129
MATNKRTLSRIGFYCELALFLIITLFPFFVMLMTSFKGAKEAISLHPTLLPQQWTLEHYV
DIFNPMIFPFVDYFRNSLVVSVVSSVVAVFLGILGAYALSRLRFKGRMTINASFYTVYMF
SGILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDG
LNRLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFASIFLSSASNFTLPVGLNALFSTP
DYIWGRMMAASLVTALPVVIMYALSERFIKSGLTAGGVKG
>gi|223713582|gb|ACDM01000016.1| GENE   111    119738  -    120619    947    293 aa, chain - ## HITS:1  COG:ECs1890 KEGG:ns NR:ns ## COG: ECs1890 COG1175 # Protein_GI_number: 15831144 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     293       1     293     293     487   99.0  1e-138
MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNY
VRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPS
ISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFI
SFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYL
LTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK
>gi|223713582|gb|ACDM01000016.1| GENE   112    120640  -    121932   1585    430 aa, chain - ## HITS:1  COG:ycjN KEGG:ns NR:ns ## COG: ycjN COG1653 # Protein_GI_number: 16129271 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     430       1     430     430     818   99.0  0
MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGI
TVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEG
AFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLND
PANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLAAN
TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTS
LTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKA
LGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQ
KKLDELIEQH
>gi|223713582|gb|ACDM01000016.1| GENE   113    121946  -    123625   1051    559 aa, chain - ## HITS:1  COG:ycjM KEGG:ns NR:ns ## COG: ycjM COG0366 # Protein_GI_number: 16129270 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1     559      10     568     568    1165   99.0  0
MKQKITDYLDEIYGGTFTATHLQKLVTRLESAKRLITQRRKKHWDESDVVLITYADQFHS
NDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGEWQDIQQLG
ECSHLMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQ
MRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGT
SCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPP
LVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILELVEA
LQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPA
IYIQSILGSRNDYAGVEKIGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLR
RSHNEFHPDNNFTIDTINSSVMRIQRSNADGNCLTGLFNVSKNIQHVNITNLHGRDLISE
VDILGNEITLRPWQVMWIK
>gi|223713582|gb|ACDM01000016.1| GENE   114    123838  -    124152    410    104 aa, chain - ## HITS:1  COG:pspE KEGG:ns NR:ns ## COG: pspE COG0607 # Protein_GI_number: 16129269 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1     104       1     104     104     206  100.0  1e-53
MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKN
DTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG
>gi|223713582|gb|ACDM01000016.1| GENE   115    124227  -    124448    242     73 aa, chain - ## HITS:1  COG:no KEGG:ECDH10B_1424 NR:ns ## KEGG: ECDH10B_1424 # Name: pspD # Def: peripheral inner membrane phage-shock protein # Organism: E.coli_DH10B # Pathway: not_defined # 1      73       1      73      73     112  100.0  6e-24
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL
SRAANKLAQRYKR
>gi|223713582|gb|ACDM01000016.1| GENE   116    124457  -    124816    550    119 aa, chain - ## HITS:1  COG:ECs1883 KEGG:ns NR:ns ## COG: ECs1883 COG1983 # Protein_GI_number: 15831137 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     119       1     119     119     228  100.0  3e-60
MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIIL
SFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREMERYVTSDTFTLRSRFRQL
>gi|223713582|gb|ACDM01000016.1| GENE   117    124816  -    125040    311     74 aa, chain - ## HITS:1  COG:no KEGG:ECDH10B_1422 NR:ns ## KEGG: ECDH10B_1422 # Name: pspB # Def: phage shock protein B # Organism: E.coli_DH10B # Pathway: not_defined # 1      74       1      74      74     127  100.0  9e-29
MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLADEAKRMRERIQAL
ESILDAEHPNWRDR
>gi|223713582|gb|ACDM01000016.1| GENE   118    125094  -    125762    974    222 aa, chain - ## HITS:1  COG:ECs1881 KEGG:ns NR:ns ## COG: ECs1881 COG1842 # Protein_GI_number: 15831135 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Escherichia coli O157:H7 # 1     222       1     222     222     280  100.0  2e-75
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR
IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK
EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA
EAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ
>gi|223713582|gb|ACDM01000016.1| GENE   119    125929  -    126906    925    325 aa, chain + ## HITS:1  COG:pspF KEGG:ns NR:ns ## COG: pspF COG1221 # Protein_GI_number: 16129264 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1     325       6     330     330     641  100.0  0
MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF
ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL
LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR
ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH
GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY
NQKRAAELLGLTYHQFRALLKKHQI
>gi|223713582|gb|ACDM01000016.1| GENE   120    127026  -    128291   1285    421 aa, chain - ## HITS:1  COG:goaG KEGG:ns NR:ns ## COG: goaG COG0160 # Protein_GI_number: 16129263 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli K12 # 1     421       1     421     421     798  100.0  0
MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPD
LVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKI
ARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ
DSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEV
QSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGN
PLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAVEFND
PQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS
D
>gi|223713582|gb|ACDM01000016.1| GENE   121    128329  -    129609   1513    426 aa, chain - ## HITS:1  COG:ordL KEGG:ns NR:ns ## COG: ordL COG0665 # Protein_GI_number: 16129262 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1     426       1     426     426     871  100.0  0
MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASR
IGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFEGGEIIRERIKRYQIDCDY
RPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGH
IHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGD
KVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGG
GVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYM
QGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSL
RDRLGV
>gi|223713582|gb|ACDM01000016.1| GENE   122    129611  -    131098   1688    495 aa, chain - ## HITS:1  COG:aldH KEGG:ns NR:ns ## COG: aldH COG1012 # Protein_GI_number: 16129261 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     495       1     495     495     981  100.0  0
MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDID
RAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDD
IPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGP
ALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAI
AFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQ
VCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREG
ESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLAND
SQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL
EKFTELKTIWISLEA
>gi|223713582|gb|ACDM01000016.1| GENE   123    131373  -    131930    509    185 aa, chain - ## HITS:1  COG:ycjC KEGG:ns NR:ns ## COG: ycjC COG1396 # Protein_GI_number: 16129260 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     185       1     185     185     344  100.0  5e-95
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYG
LSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTT
GERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH
TPTTF
>gi|223713582|gb|ACDM01000016.1| GENE   124    131957  -    132709    217    250 aa, chain - ## HITS:1  COG:ycjL KEGG:ns NR:ns ## COG: ycjL COG2071 # Protein_GI_number: 16129259 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Escherichia coli K12 # 1     250       9     258     258     490  100.0  1e-139
MNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDG
IYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMAIINAALERRIPIFAICRGLQELVVAT
GGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFWVNSLHG
QGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITAC
QHHIAEKQRL
>gi|223713582|gb|ACDM01000016.1| GENE   125    132933  -    134351   1236    472 aa, chain + ## HITS:1  COG:ycjK KEGG:ns NR:ns ## COG: ycjK COG0174 # Protein_GI_number: 16129258 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Escherichia coli K12 # 1     472      27     498     498     971  100.0  0
METNIVEVENFVQQSEERRGSAFTQEVKRYLERYPNTQYVDVLLTDLNGCFRGKRIPVSS
LKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVPVLGSLTPSAADPEFIGQM
LLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVELEFYLLDRQRDAEGYLQPPCA
PGTDDRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIPADGAVAEASPGQFEINLYHTDN
VLEACDDALALKRLVRLMAEKHKMHATFMAKPYEEHAGSGMHIHISMQNNRGENVLSDAE
GEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRRFQPGMYVPTQASWGHNNRTVALRIPC
GDRHNHRVEYRVAGADANPYLVMAAIFAGILHGLDNELPLQEEVEGNGLEQEGLPFPIRQ
SDALGEFIENDHLRRYLGERFCHVYHACKNDELLQFERLITETEIEWMLKNA
>gi|223713582|gb|ACDM01000016.1| GENE   126    134654  -    136039   1569    461 aa, chain + ## HITS:1  COG:ycjJ KEGG:ns NR:ns ## COG: ycjJ COG0531 # Protein_GI_number: 16129257 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     461      19     479     479     860   99.0  0
MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTFGIVSGISDGHVPASYL
LALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMVGWSSLLDYLFLPMINVLL
AKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFNTLFVLVQISIMVVFIFLVVQ
ELHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSFLGFDAVTTLSEETPDAARVIPK
AIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAALPEIALYVGGKLFQSIFLCTTFVN
TLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTPALNVIMVGIVALSALFFDLV
TATALINFGALVAFTFVNLSVFNHFWRRKGMNKSWKDHFHYLLMPLVGALTVGVLWVNLE
STSLTLGLVWASLGGAYLWYLIRRYRKVPLYDGDRTPVSET
>gi|223713582|gb|ACDM01000016.1| GENE   127    136173  -    136418    296     81 aa, chain + ## HITS:1  COG:no KEGG:Z2493 NR:ns ## KEGG: Z2493 # Name: ymjA # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 1      81       1      81      81     141   98.0  9e-33
MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAE
AGINPVRIDEIAEFLNQWGNE
>gi|223713582|gb|ACDM01000016.1| GENE   128    136731  -    138374   1412    547 aa, chain + ## HITS:1  COG:sapA KEGG:ns NR:ns ## COG: sapA COG4166 # Protein_GI_number: 16129255 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     547       1     547     547    1076  100.0  0
MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDT
LAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNA
DDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFL
WHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG
KPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAYL
AFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYN
PAKSREQLKSLGLENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRF
QEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALS
SQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVYREK
QDEVKKP
>gi|223713582|gb|ACDM01000016.1| GENE   129    138371  -    139336    588    321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 1     318       1     317     320 231  35 2e-59
MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSS
INGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRHKWQDNLINAIALLGFS
IPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDAWLSDSPWRDEMIMSAI
RHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP
VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVCGSLVIIVNV
ISDILGAMANPLKHKEWYALR
>gi|223713582|gb|ACDM01000016.1| GENE   130    139323  -    140213    928    296 aa, chain + ## HITS:1  COG:sapC KEGG:ns NR:ns ## COG: sapC COG4171 # Protein_GI_number: 16129253 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Escherichia coli K12 # 1     296       1     296     296     535  100.0  1e-152
MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLG
YQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFA
GATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSM
VHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLG
AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAIIAGVE
>gi|223713582|gb|ACDM01000016.1| GENE   131    140213  -    141205    468    330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 14     321      31     324     329 184  37 2e-45
MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN
WRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWT
YKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL
IADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET
APSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPY
AQRECIVTPRLTGAKNHLYACHFPLNMEKE
>gi|223713582|gb|ACDM01000016.1| GENE   132    141195  -    142013    448    272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1     256       3     263     329 177  35 4e-43
RKSEMIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTL
AKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLR
LNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADE
ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTA
DVLASPLHELTKRLIAGHFGEALTADAWRKDR
>gi|223713582|gb|ACDM01000016.1| GENE   133    142207  -    142434     81     75 aa, chain + ## HITS:1  COG:ycjD KEGG:ns NR:ns ## COG: ycjD COG2852 # Protein_GI_number: 16129250 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      75      43     117     117     151   98.0  3e-37
MGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETV
LENILQELNRRSPSP
>gi|223713582|gb|ACDM01000016.1| GENE   134    142802  -    143590   1104    262 aa, chain + ## HITS:1  COG:ECs1861 KEGG:ns NR:ns ## COG: ECs1861 COG0623 # Protein_GI_number: 15831115 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Escherichia coli O157:H7 # 1     262       1     262     262     506  100.0  1e-143
MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIV
LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS
SYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPE
GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI
SGEVVHVDGGFSIAAMNELELK
>gi|223713582|gb|ACDM01000016.1| GENE   135    143734  -    144861    403    375 aa, chain + ## HITS:1  COG:yciW_1 KEGG:ns NR:ns ## COG: yciW_1 COG4950 # Protein_GI_number: 16129248 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     210      27     236     236     423  100.0  1e-118
MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPA
RVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRE
SNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATF
QAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEIL
SLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMR
KGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGL
CGWINRLKIALGETY
>gi|223713582|gb|ACDM01000016.1| GENE   136    144929  -    146863   2149    644 aa, chain + ## HITS:1  COG:ECs1859 KEGG:ns NR:ns ## COG: ECs1859 COG4776 # Protein_GI_number: 15831113 # Func_class: K Transcription # Function: Exoribonuclease II # Organism: Escherichia coli O157:H7 # 1     644       1     644     644    1281   99.0  0
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH
EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD
PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
>gi|223713582|gb|ACDM01000016.1| GENE   137    147098  -    149083   1138    661 aa, chain + ## HITS:1  COG:yciR_3 KEGG:ns NR:ns ## COG: yciR_3 COG2200 # Protein_GI_number: 16129246 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 401     661       1     261     261     530  100.0  1e-150
MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVI
TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA
HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG
NAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD
SITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAI
LSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGI
ALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIEND
ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR
A
>gi|223713582|gb|ACDM01000016.1| GENE   138    149231  -    149404    233     57 aa, chain + ## HITS:1  COG:no KEGG:EC55989_1446 NR:ns ## KEGG: EC55989_1446 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      57      15      71      71     105  100.0  4e-22
MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVAESTPDIPKAPWEI
>gi|223713582|gb|ACDM01000016.1| GENE   139    149494  -    150243    631    249 aa, chain + ## HITS:1  COG:ECs1857 KEGG:ns NR:ns ## COG: ECs1857 COG1349 # Protein_GI_number: 15831111 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1     249       1     249     249     480  100.0  1e-135
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSD
DVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSY
IAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRD
MMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
KLTVHVVDI
>gi|223713582|gb|ACDM01000016.1| GENE   140    150512  -    150730    356     72 aa, chain + ## HITS:1  COG:no KEGG:G2583_1624 NR:ns ## KEGG: G2583_1624 # Name: osmB # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      72       1      72      72      74  100.0  1e-12
MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA
AVGGVIGHQVGK
>gi|223713582|gb|ACDM01000016.1| GENE   141    150856  -    151182    511    108 aa, chain - ## HITS:1  COG:yciH KEGG:ns NR:ns ## COG: yciH COG0023 # Protein_GI_number: 16129243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 1 (eIF-1/SUI1) and related proteins # Organism: Escherichia coli K12 # 1     108       2     109     109     177  100.0  5e-45
MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAEL
TKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLAGG
>gi|223713582|gb|ACDM01000016.1| GENE   142    151182  -    151919    660    245 aa, chain - ## HITS:1  COG:pyrF KEGG:ns NR:ns ## COG: pyrF COG0284 # Protein_GI_number: 16129242 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Escherichia coli K12 # 1     245       1     245     245     456  100.0  1e-128
MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRE
LQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKD
APLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVF
GQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS
LQRSA
>gi|223713582|gb|ACDM01000016.1| GENE   143    152113  -    153282   1241    389 aa, chain - ## HITS:1  COG:ECs1853 KEGG:ns NR:ns ## COG: ECs1853 COG2956 # Protein_GI_number: 15831107 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosaminyl transferase # Organism: Escherichia coli O157:H7 # 10     389      10     389     389     721  100.0  0
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA
GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIA
HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGL
>gi|223713582|gb|ACDM01000016.1| GENE   144    153289  -    153597    201    102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein [Haemophilus influenzae R2866] # 1      89       2      90      97 82  35 2e-14
MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLIC
GLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
>gi|223713582|gb|ACDM01000016.1| GENE   145    153746  -    154510    498    254 aa, chain - ## HITS:1  COG:ECs1851 KEGG:ns NR:ns ## COG: ECs1851 COG0671 # Protein_GI_number: 15831105 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli O157:H7 # 1     254       1     254     254     446  100.0  1e-125
MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLIL
FGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDE
FYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWP
RRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPP
AEENREIAQREQES
>gi|223713582|gb|ACDM01000016.1| GENE   146    154680  -    155270    710    196 aa, chain + ## HITS:1  COG:ECs1850 KEGG:ns NR:ns ## COG: ECs1850 COG0807 # Protein_GI_number: 15831104 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Escherichia coli O157:H7 # 1     196       1     196     196     403  100.0  1e-112
MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDAL
FSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKIRAYALQDQGYDTVEANHQ
LGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNE
HYLDTKAEKMGHLLNK
>gi|223713582|gb|ACDM01000016.1| GENE   147    155334  -    158009   2426    891 aa, chain - ## HITS:1  COG:acnA KEGG:ns NR:ns ## COG: acnA COG1048 # Protein_GI_number: 16129237 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1     891       1     891     891    1798   99.0  0
MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKVLLENLLRWQDGNSVTE
EDIHALAGWLKNAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPL
SPVDLVIDHSVTVDRFGDDEAFEENVRLEMERNHERYVFLKWGKQAFSRFSVVPPGTGIC
HQVNLEYLGKAVWSELQDGEWIAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLRKHGVVGKFVEFYGDGLDSLPLADR
ATIANMSPEYGATCGFFPIDAVTLDYMRLSGRSEDQVELVEKYAKAQGMWRNPGDEPIFT
STLELDMNDVEASLAGPKRPQDRVALPDVPKAFAASNELEVNATHKDRQPVDYVMNGHQY
QLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYL
AKAKLTPYLDELGFNLVGYGCTTCIGNSGPLPDPIETAIKKGDLTVGAVLSGNRNFEGRI
HPLVKTNWLASPPLVVAYALAGNMNINLASEPIGHDRKGDPVYLKDIWPSAQEIARAVEQ
VSTEMFRKEYAEVFEGTAEWKGINVTRSDTYGWQEDSTYIRLSPFFDEMQATPAPVEDIH
GARILAMLGDSVTTDHISPAGSIKPDSPAGRYLQGRGVERKDFNSYGSRRGNHEVMMRGT
FANIRIRNEMVPGVEGGMTRHLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDW
AAKGPRLLGIRVVIAESFERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQN
LQPGATVPVTLTRADGSQEVVPCRCRIDTATELTYYQNDGILHYVIRNMLK
>gi|223713582|gb|ACDM01000016.1| GENE   148    158173  -    158268     56     31 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MINTNMKYWSWMGAFSLSMLFWAELLWIITH
>gi|223713582|gb|ACDM01000016.1| GENE   149    158382  -    158549    141     55 aa, chain - ## HITS:1  COG:no KEGG:SSON_1865 NR:ns ## KEGG: SSON_1865 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      55       5      59      59      80  100.0  1e-14
MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ
>gi|223713582|gb|ACDM01000016.1| GENE   150    158552  -    158680     63     42 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1434 NR:ns ## KEGG: EC55989_1434 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      42      13      54      54      73  100.0  2e-12
MPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG
>gi|223713582|gb|ACDM01000016.1| GENE   151    159011  -    159985    888    324 aa, chain - ## HITS:1  COG:ECs1847 KEGG:ns NR:ns ## COG: ECs1847 COG0583 # Protein_GI_number: 15831101 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     324       1     324     324     647  100.0  0
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT
PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP
RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG
KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV
GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV
DAAVALRSNEEIEVMFKDIKLPEK
>gi|223713582|gb|ACDM01000016.1| GENE   152    160195  -    162792   2871    865 aa, chain - ## HITS:1  COG:topA_1 KEGG:ns NR:ns ## COG: topA_1 COG0550 # Protein_GI_number: 16129235 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Escherichia coli K12 # 1     592       1     592     592    1167  100.0  0
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH
QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN
SQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKR
RCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
>gi|223713582|gb|ACDM01000016.1| GENE   153    163172  -    163423    417     83 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_1292 NR:ns ## KEGG: ECIAI1_1292 # Name: yciN # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      83       1      83      83     158  100.0  7e-38
MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK
STAVFNMFKHLAHVLSEKYHLVD
>gi|223713582|gb|ACDM01000016.1| GENE   154    163459  -    164508   1047    349 aa, chain - ## HITS:1  COG:sohB KEGG:ns NR:ns ## COG: sohB COG0616 # Protein_GI_number: 16129233 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Escherichia coli K12 # 1     349       1     349     349     594  100.0  1e-169
MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMKEELAA
ALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSL
REEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGG
YMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENT
EEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVDEINTSDEV
ILSLMEGREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQKPLM
>gi|223713582|gb|ACDM01000016.1| GENE   155    164728  -    165486    719    252 aa, chain + ## HITS:1  COG:yciK KEGG:ns NR:ns ## COG: yciK COG1028 # Protein_GI_number: 16129232 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     252       1     252     252     496  100.0  1e-140
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET
GRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV
MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLA
DEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTF
DAQPGRKPGISQ
>gi|223713582|gb|ACDM01000016.1| GENE   156    165483  -    166073    707    196 aa, chain + ## HITS:1  COG:btuR KEGG:ns NR:ns ## COG: btuR COG2109 # Protein_GI_number: 16129231 # Func_class: H Coenzyme transport and metabolism # Function: ATP:corrinoid adenosyltransferase # Organism: Escherichia coli K12 # 1     196       1     196     196     389  100.0  1e-108
MSDERYQQRQQRVKEKVDARVAQAQDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVG
VVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWDTQNRESDTAACREVWQHAKRMLADSS
LDMVLLDELTYMVAYDYLPLEEVVQALNERPHQQTVIITGRGCHRDILELADTVSELRPV
KHAFDAGVKAQIGIDY
>gi|223713582|gb|ACDM01000016.1| GENE   157    166113  -    166988   1169    291 aa, chain - ## HITS:1  COG:yciL KEGG:ns NR:ns ## COG: yciL COG1187 # Protein_GI_number: 16129230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1     291       1     291     291     541  100.0  1e-154
MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR
ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT
TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI
NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL
RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG
>gi|223713582|gb|ACDM01000016.1| GENE   158    167199  -    169094    750    631 aa, chain - ## HITS:1  COG:no KEGG:JW5197 NR:ns ## KEGG: JW5197 # Name: yciQ # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     615       1     615     631    1275  100.0  0
MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQA
RNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQ
RFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFS
EIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSH
LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVY
DDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKG
DKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGW
AGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYI
NVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAA
THSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTH
LSCGANTSLLGRSYSGGGAGGGAGGGGGGGW
>gi|223713582|gb|ACDM01000016.1| GENE   159    169122  -    169742    778    206 aa, chain - ## HITS:1  COG:ECs1839 KEGG:ns NR:ns ## COG: ECs1839 COG0009 # Protein_GI_number: 15831093 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Escherichia coli O157:H7 # 1     206      13     218     218     419  100.0  1e-117
MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP
DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG
MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK
PTTVIDLTDDTPVVVREGVGDVKPFL
>gi|223713582|gb|ACDM01000016.1| GENE   160    169739  -    170620    382    293 aa, chain - ## HITS:1  COG:yciV KEGG:ns NR:ns ## COG: yciV COG0613 # Protein_GI_number: 16129227 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Escherichia coli K12 # 1     293       1     293     293     582  100.0  1e-166
MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISR
SGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEK
AQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTI
EQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNERTQLA
ALARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPQNTTEREL
>gi|223713582|gb|ACDM01000016.1| GENE   161    170894  -    172456   1603    520 aa, chain + ## HITS:1  COG:ECs1836 KEGG:ns NR:ns ## COG: ECs1836 COG0147 # Protein_GI_number: 15831090 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Escherichia coli O157:H7 # 1     520       1     520     520    1020   98.0  0
MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADIDSKDDLKSLLLVDSALR
ITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRVLRFPPVSPLLDEDARLCS
LSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFEDLPQLSAENNCPDFCFYLAET
LMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQLTEAAPPLPVVSVPHMRCECNQ
SDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDND
FTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELS
EHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRAC
MNMGTLSGAPKVRAMQLIAEAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVENGIATV
QAGAGVVLDSVPQSEADETRNKARAVLRAIATAHHAQETF
>gi|223713582|gb|ACDM01000016.1| GENE   162    172456  -    174051   1631    531 aa, chain + ## HITS:1  COG:trpD_2 KEGG:ns NR:ns ## COG: trpD_2 COG0547 # Protein_GI_number: 16129224 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Escherichia coli K12 # 197     531       1     335     335     601   99.0  1e-171
MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV
PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF
AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGA
RLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQESHLLFSAVVRGELKPEQLAAALV
SMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAAC
GLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHA
MPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGG
MDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKG
DAAHEAAVAANVAMLMRLHGHEDLQANAQTVLEVLRSGSAYDRVTALAARG
>gi|223713582|gb|ACDM01000016.1| GENE   163    174055  -    175413   1184    452 aa, chain + ## HITS:1  COG:trpC_1 KEGG:ns NR:ns ## COG: trpC_1 COG0134 # Protein_GI_number: 16129223 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Escherichia coli K12 # 1     253       2     254     254     505  100.0  1e-143
MQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGARTAFILECKKASPS
KGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDP
YQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKV
VGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALM
AHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVM
AAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALS
VGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTG
CAGLDFNSAVESQPGIKDARLLASVFQTLRAY
>gi|223713582|gb|ACDM01000016.1| GENE   164    175425  -    176618   1322    397 aa, chain + ## HITS:1  COG:trpB KEGG:ns NR:ns ## COG: trpB COG0133 # Protein_GI_number: 16129222 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Escherichia coli K12 # 1     397       1     397     397     796  100.0  0
MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALT
KCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASA
LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS
YETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIACVGGGSNAIGM
FADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTEDGQIEESYSI
SAGLDFPSVGPQHAYLNSTGRADYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALK
MMRENPDKEQLLVVNLSGRGDKDIFTVHDILKARGEI
>gi|223713582|gb|ACDM01000016.1| GENE   165    176618  -    177424    392    268 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1     249       1     248     263 155  35 1e-36
MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLAD
GPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVFNKGIDEFYAQCEK
VGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRA
GVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKI
IEQHINEPEKMLAALKVFVQPMKAATRS
>gi|223713582|gb|ACDM01000016.1| GENE   166    177805  -    177984    220     59 aa, chain + ## HITS:1  COG:STM1728 KEGG:ns NR:ns ## COG: STM1728 COG3729 # Protein_GI_number: 16765072 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1      55       1      55      60      58   89.0  4e-09
MAEHRGGSGNFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGKS
>gi|223713582|gb|ACDM01000016.1| GENE   167    178070  -    178570    616    166 aa, chain + ## HITS:1  COG:yciF KEGG:ns NR:ns ## COG: yciF COG3685 # Protein_GI_number: 16129219 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     166       1     166     166     234  100.0  4e-62
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQ
VVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTL
ATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAENKA
>gi|223713582|gb|ACDM01000016.1| GENE   168    178616  -    179122    646    168 aa, chain + ## HITS:1  COG:yciE KEGG:ns NR:ns ## COG: yciE COG3685 # Protein_GI_number: 16129218 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     168       1     168     168     309  100.0  1e-84
MNRIEHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETIL
DRNDISRSVIKDSMSKMAALGQSIGGIFPSDEIVKGSISGYVFEQFEIACYTSLLAAAKN
AGDTASIPTIEAILNEEKQMADWLIQNIPQTTEKFLIRSETDGVEAKK
>gi|223713582|gb|ACDM01000016.1| GENE   169    179182  -    179289     56     35 aa, chain - ## HITS:1  COG:ompW KEGG:ns NR:ns ## COG: ompW COG3047 # Protein_GI_number: 16129217 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein W # Organism: Escherichia coli K12 # 1      35     178     212     212      75  100.0  2e-14
MDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:45:51 2011
 Seq name: gi|223713581|gb|ACDM01000017.1| Escherichia sp. 4_1_40B cont1.17, whole genome shotgun sequence 
 Length of sequence - 14596 bp
 Number of predicted genes - 16, with homology - 15
 Number of transcription units - 10, operones - 4 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          3 -       486    236  ## COG5525 Bacteriophage tail assembly protein
     2     1 Op  2   4/0.000   -    CDS        486 -      1301    218  ## COG5525 Bacteriophage tail assembly protein
     3     1 Op  3     .       -    CDS       1231 -      1779    488  ## COG4220 Phage DNA packaging protein, Nu1 subunit of terminase
                               -    Prom      1865 -      1924    7.2 
                               +    Prom      2108 -      2167    7.1 
     4     2 Tu  1     .       +    CDS       2191 -      3258    242  ## EC55989_1387 hypothetical protein
     5     3 Tu  1     .       -    CDS       3200 -      3820    149  ## EC55989_1386 putative phage regulatory protein
                               -    Prom      3857 -      3916    6.6 
                               +    Prom      3630 -      3689    2.7 
     6     4 Tu  1     .       +    CDS       3764 -      3973     58  ## 
                               -    Term      4153 -      4201    4.3 
     7     5 Op  1   1/0.000   -    CDS       4242 -      5276    588  ## COG2801 Transposase and inactivated derivatives
                               -   TRNA       6252 -      6328   86.1  # Arg TCT 0 0
                               -   TRNA       6426 -      6501   88.5  # Met CAT 0 0
     8     5 Op  2     .       -    CDS       6551 -      7600    649  ## COG0863 DNA modification methylase
     9     6 Tu  1     .       -    CDS       7751 -      7948    158  ## ECO26_1481 hypothetical protein
                               -    Prom      8085 -      8144    2.1 
                               -    Term      8093 -      8138    6.2 
    10     7 Op  1     .       -    CDS       8175 -      8996    352  ## SbBS512_E1442 antitermination protein Q
    11     7 Op  2     .       -    CDS       8993 -      9373    289  ## COG4570 Holliday junction resolvase
    12     7 Op  3     .       -    CDS       9374 -     10357    410  ## APECO1_1034 hypothetical protein
                               -    Term     10781 -     10806   -0.5 
    13     8 Tu  1     .       -    CDS      10876 -     11088    194  ## ECO103_2268 prophage maintenance protein
    14     9 Op  1     .       -    CDS      11649 -     12650    235  ## ECS88_1342 conserved hypothetical protein from phage origin
    15     9 Op  2     .       -    CDS      12666 -     13688    439  ## ECS88_1341 hypothetical protein
                               -    Prom     13780 -     13839    2.2 
    16    10 Tu  1     .       -    CDS      14290 -     14472     95  ## COG3039 Transposase and inactivated derivatives, IS5 family
Predicted protein(s)
>gi|223713581|gb|ACDM01000017.1| GENE     1         3  -       486    236    161 aa, chain - ## HITS:1  COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 50     161     103     214     247     214   95.0  6e-56
MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNS
DEASWHLVEDHRGKTVYDVASGDELFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEA
EKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEET
>gi|223713581|gb|ACDM01000017.1| GENE     2       486  -      1301    218    271 aa, chain - ## HITS:1  COG:STM2608 KEGG:ns NR:ns ## COG: STM2608 COG5525 # Protein_GI_number: 16765929 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Salmonella typhimurium LT2 # 15      86       1      72     643     113   70.0  4e-25
MLQLRPVKTWAGGSMISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKESSY
TPGRWETLPFQVGIMNCMGNDLIRTVMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASAS
STDLGTKTTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYT
AISNLSAGIMSTTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAI
GSHGHTITVNAAGNAENTVKNIAFNYIVRLA
>gi|223713581|gb|ACDM01000017.1| GENE     3      1231  -      1779    488    182 aa, chain - ## HITS:1  COG:STM2609 KEGG:ns NR:ns ## COG: STM2609 COG4220 # Protein_GI_number: 16765930 # Func_class: L Replication, recombination and repair # Function: Phage DNA packaging protein, Nu1 subunit of terminase # Organism: Salmonella typhimurium LT2 # 1     164       1     164     164     236   75.0  2e-62
MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENE
KLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR
VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRAE
GS
>gi|223713581|gb|ACDM01000017.1| GENE     4      2191  -      3258    242    355 aa, chain + ## HITS:1  COG:no KEGG:EC55989_1387 NR:ns ## KEGG: EC55989_1387 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     355       1     355     355     703   99.0  0
MSQHQYYPQLKWKPAEYESLMLLDQTTLSGFTPIITIPDIDWDYENECYKKSLSSYLSDF
GINLAASWKANRPVLLDVKYLDKHGSSRHHPLDMCIQDARVNGKEIIPVVSPAYSTNYIH
AVQRNLINGLAISITPQTWHQFTSLVNHLNIHPSLIDVIIDFGDIQNATDSLKQQALSMV
NTLSGQAPWRNLILSSTAYPASQAGIPQHQVHHIPRHEYDLWMYVVQNFSNGRTPSFSDY
PTASSTITSVDPRFMSQYVSVRYSNDTSWIFVKGTAVKGNGWGQTKNLCTTLVSSPEYQV
FGSKFSWGDDYIYQRSLGANKSGGSKEWRKVAHTHHITLVVRQLYWLAQTQPAKP
>gi|223713581|gb|ACDM01000017.1| GENE     5      3200  -      3820    149    206 aa, chain - ## HITS:1  COG:no KEGG:EC55989_1386 NR:ns ## KEGG: EC55989_1386 # Name: not_defined # Def: putative phage regulatory protein # Organism: E.coli_55989 # Pathway: not_defined # 1     206       1     206     206     401   99.0  1e-111
MKDQDVRFAVHHKLLKESHLDPDCLVVDEFSISLGASRADIAVINGVIHGYELKSEYDSL
ERLPLQIKHYSSVMDKVTLVVAEKHLEGALKLIPGWWGVKTVSVGPKGAILIKHMRGEKL
NRNHDTLMLAQLLWKDECIDVLERWGYSKGIKSKPRFELWNIIAENIPIANLRLEVRTAL
KKRVGWKVKAWQAESAPTNKAVSRLT
>gi|223713581|gb|ACDM01000017.1| GENE     6      3764  -      3973     58     69 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MRFFQKLMMHREPNILIFHDFSLLPPLLNYSALHFTAFERFDHFNHKMLICSNKIHSHTT
MVITFCLEN
>gi|223713581|gb|ACDM01000017.1| GENE     7      4242  -      5276    588    344 aa, chain - ## HITS:1  COG:ECs2262 KEGG:ns NR:ns ## COG: ECs2262 COG2801 # Protein_GI_number: 15831516 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     334       1     334     616     598   85.0  1e-171
MAFKHYDVVRAASPSDLAKRLTQKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATE
PEWYYVIVLAGQSNAMAYGEGLPLPDSYDAPHPRIKQLARRNTVTPGGEVCVFNDIIPAD
HCLHDVQDMSTINHPRADLSKGQYGCVGQGLHIAKKLLPYIPNNAGILLVPCCRGGSAFT
QGTEGTFSESTGASQDSARWGVGKPLYQDLLFRTKAALQKNPKNVLLAICWMQGEFDMTN
ASYAQQPAAFLAMVQQFRADLAGLAAQCHGGSPASVPWICGDTTYAWKQEHGTQYEVVYG
AYKGKESQQIYFVPFMTDGSGVNTPTNNPSEDPDTCRSTSGRSA
>gi|223713581|gb|ACDM01000017.1| GENE     8      6551  -      7600    649    349 aa, chain - ## HITS:1  COG:ECs1780 KEGG:ns NR:ns ## COG: ECs1780 COG0863 # Protein_GI_number: 15831034 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli O157:H7 # 1     349       1     349     352     698   93.0  0
MLNTVKISSCELINADCLEFIRSLPENSVDLIVTDPPYFKVKPEGWDNQWKGDDDYLKWL
DQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCNKESL
RAYFPATERILFAEHYQGPYRPKDAGYAAKGSALKQHVMAPLISYFRDARAALGITAKQI
ADATGKKNMVSHWFSASQWQLPNESDYLKLQSLFARVAEEKHQRGELEKPHHQLVDTYTS
LNRQYVELQSEYKHLRRYFGVTAQVPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASS
RPGDLVADFFMGSGSTVKAALALGRRAIGVELETGRFEQTVREVQDLIV
>gi|223713581|gb|ACDM01000017.1| GENE     9      7751  -      7948    158     65 aa, chain - ## HITS:1  COG:no KEGG:ECO26_1481 NR:ns ## KEGG: ECO26_1481 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1      65      42     106     106     123  100.0  2e-27
MLKQQDMTETARVVFNELSVTEPATVGEIAQNTYLSRERCQLILTQLVMAGLADYQFGCY
RRLPQ
>gi|223713581|gb|ACDM01000017.1| GENE    10      8175  -      8996    352    273 aa, chain - ## HITS:1  COG:no KEGG:SbBS512_E1442 NR:ns ## KEGG: SbBS512_E1442 # Name: not_defined # Def: antitermination protein Q # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1     273       1     273     273     531  100.0  1e-150
MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISM
NDRERATELLTEYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCC
YGEKFIESVVFTNKVQYPDGKPPVWAKCTKGVYPSYWEEWKKVREVVKVACPECGGKGEV
STACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGCERLPSTEAFNAICKVTSAITLD
TWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR
>gi|223713581|gb|ACDM01000017.1| GENE    11      8993  -      9373    289    126 aa, chain - ## HITS:1  COG:ECs1523 KEGG:ns NR:ns ## COG: ECs1523 COG4570 # Protein_GI_number: 15830777 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 4     126       2     124     124     227   99.0  4e-60
MTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKI
IAEPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPVSGGRLGVKIYPIML
EGQVKK
>gi|223713581|gb|ACDM01000017.1| GENE    12      9374  -     10357    410    327 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1034 NR:ns ## KEGG: APECO1_1034 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     327      25     351     351     662   99.0  0
MPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSD
WLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAW
MIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDI
VPGEQTATSILKQRTKNLAPLPHAHQQNPPQEKTVVSIAVDPESPAQYLQRQKSQREEMP
VYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHSELHAGVKDFE
EKHGSQLLLLIRFLMHARNSGVLKWKA
>gi|223713581|gb|ACDM01000017.1| GENE    13     10876  -     11088    194     70 aa, chain - ## HITS:1  COG:no KEGG:ECO103_2268 NR:ns ## KEGG: ECO103_2268 # Name: not_defined # Def: prophage maintenance protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      70       1      70      70     114   98.0  1e-24
MNGKSRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIMTALVTRKDLCEVRIRTGQTEV
AVFTAYEPEE
>gi|223713581|gb|ACDM01000017.1| GENE    14     11649  -     12650    235    333 aa, chain - ## HITS:1  COG:no KEGG:ECS88_1342 NR:ns ## KEGG: ECS88_1342 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_S88 # Pathway: not_defined # 1     333       1     333     333     696   99.0  0
MDIRTRKTKFLESLDSTEVIRKAVSLAIDCIIDNHNSNEDTPLVITSYDDLCRIQVLNYV
QEFCEAAFPDMDEYYFSPNILRINGKTSEEACINLIKLLRSTKGMLFWSDAPSWFASLPD
GLFHVVNIDQKIVTRGLNKKNSKPTIINKDYSVDTLLSELFLNGAHMEQPNVHNVSEGNM
KFYDECHAGLIRPIPAPIGASYDEEITINSPDWQKLACVALRRYQSKECHDGMQWDTTDH
GWTDVIAYPFVEEIQSMDNSGYRQCLVGLVTINNSNANSPYLSTVWIHLFYRRRGLLSKL
WPKLQELYGSNFEIERPNENMKAFLKSAKHADY
>gi|223713581|gb|ACDM01000017.1| GENE    15     12666  -     13688    439    340 aa, chain - ## HITS:1  COG:no KEGG:ECS88_1341 NR:ns ## KEGG: ECS88_1341 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     340      31     370     370     650  100.0  0
MPCISLWYNSCAIDTRERYIVKIVFEVNGKKVPLKSLKYISKKDQLEVMKNWFFENFEDP
ANACPYESREGGYAYIYGGPYDASEELQSIFGQYVKSEYIEELVDELQTQCFDWSGNSNN
IDDWYDDDIYDAVTSSGNPYLKFIDNIDKIKKLAKDKTEQQQKNHLLSLLYTNVITALET
LYVELFINSIEKDDVYIANCIEKGKTEFKVSKDIAALPFKGEPIEKIRGELIRSIKEHLI
SASWHSTKKVIDRYEATFDIKVQKDCPIEAIELATLNRNHLVHRGGKDKEGNLVVITDQD
LETLIENASNLAIMLYNSLNVATNKTTILQPDDKPFIHEF
>gi|223713581|gb|ACDM01000017.1| GENE    16     14290  -     14472     95     60 aa, chain - ## HITS:1  COG:yi52_g5 KEGG:ns NR:ns ## COG: yi52_g5 COG3039 # Protein_GI_number: 16129331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Escherichia coli K12 # 1      60     267     326     326     117   98.0  7e-27
MKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:46:33 2011
 Seq name: gi|223713580|gb|ACDM01000018.1| Escherichia sp. 4_1_40B cont1.18, whole genome shotgun sequence 
 Length of sequence - 35023 bp
 Number of predicted genes - 41, with homology - 41
 Number of transcription units - 24, operones - 9 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2     .       -    CDS        337 -       468     57  ## ECBD_2079 protein of unknown function DUF977
     3     1 Op  3     .       -    CDS        509 -      1393    372  ## E2348C_1395 predicted replication protein
                               -    Term      1402 -      1446    2.1 
     4     2 Op  1     .       -    CDS       1491 -      1916    442  ## ECH74115_2277 hypothetical protein
     5     2 Op  2     .       -    CDS       1900 -      2181    154  ## E2348C_1393 hypothetical protein
                               -    Prom      2201 -      2260    5.2 
                               +    Prom      2117 -      2176    2.5 
     6     3 Tu  1     .       +    CDS       2282 -      2701    250  ## COG1396 Predicted transcriptional regulators
                               +    Term      2744 -      2794   13.1 
                               +    Prom      2732 -      2791    5.1 
     7     4 Op  1     .       +    CDS       2886 -      3119    150  ## E2348C_1391 hypothetical protein
     8     4 Op  2     .       +    CDS       3131 -      3532    309  ## E2348C_1390 hypothetical protein
                               +    Term      3544 -      3579   -0.7 
                               -    Term      3386 -      3440    9.6 
     9     5 Tu  1     .       -    CDS       3492 -      3770    186  ## ECSE_1695 hypothetical protein
                               -    Prom      3853 -      3912    3.2 
                               +    Prom      4112 -      4171    3.1 
    10     6 Op  1     .       +    CDS       4329 -      4517    181  ## ECSP_2138 putative inhibitor of cell division encoded by cryptic prophage CP-933P
    11     6 Op  2     .       +    CDS       4514 -      4705    171  ## ECO111_1046 hypothetical protein
    12     6 Op  3     .       +    CDS       4798 -      7269   1385  ## EcE24377A_1416 exonuclease family protein
    13     6 Op  4     .       +    CDS       7334 -      7582     69  ## ECS88_1328 phage excisionase
    14     6 Op  5     .       +    CDS       7560 -      8690    371  ## COG0582 Integrase
                               +    Term      8699 -      8732    1.2 
                               -    Term      8666 -      8697    3.1 
    15     7 Tu  1     .       -    CDS       8736 -      9305    674  ## COG3047 Outer membrane protein W
                               -    Prom      9418 -      9477    7.0 
    16     8 Op  1     .       +    CDS       9746 -     10489    559  ## JW1247 predicted inner membrane protein
    17     8 Op  2   9/0.000   +    CDS      10519 -     11058    554  ## COG2917 Intracellular septation protein A
                               +    Term     11060 -     11101    5.5 
                               +    Prom     11075 -     11134    2.1 
    18     8 Op  3     .       +    CDS      11163 -     11561    361  ## COG1607 Acyl-CoA hydrolase
                               +    Term     11564 -     11605   11.3 
                               -    Term     11552 -     11593   11.3 
    19     9 Tu  1     .       -    CDS      11601 -     12320    590  ## COG0810 Periplasmic protein TonB, links inner and outer membranes
                               -    Prom     12352 -     12411    5.6 
                               +    Prom     12280 -     12339    2.3 
    20    10 Tu  1     .       +    CDS      12448 -     12840    271  ## COG2350 Uncharacterized protein conserved in bacteria
                               +    Term     12849 -     12905    5.1 
                               +    Prom     13055 -     13114    4.8 
    21    11 Tu  1     .       +    CDS      13260 -     14393    739  ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component
                               +    Term     14418 -     14458    8.1 
                               -    Term     14406 -     14444    3.1 
    22    12 Tu  1     .       -    CDS      14448 -     14732     57  ## ECUMN_1547 hypothetical protein
                               +    Prom     14677 -     14736    7.8 
    23    13 Op  1   1/0.889   +    CDS      14764 -     16224   1234  ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes
    24    13 Op  2     .       +    CDS      16259 -     16588    519  ## COG3099 Uncharacterized protein conserved in bacteria
                               +    Term     16612 -     16643    4.1 
                               -    Term     16600 -     16631    4.1 
    25    14 Op  1  44/0.000   -    CDS      16641 -     17645    853  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    26    14 Op  2  44/0.000   -    CDS      17642 -     18655    582  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    27    14 Op  3  49/0.000   -    CDS      18667 -     19575    925  ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
    28    14 Op  4  21/0.000   -    CDS      19590 -     20510    772  ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
                               -    Term     20540 -     20592   11.1 
    29    14 Op  5     .       -    CDS      20596 -     22227   1706  ## COG4166 ABC-type oligopeptide transport system, periplasmic component
                               -    Prom     22358 -     22417    4.2 
                               +    Prom     22514 -     22573    2.4 
    30    15 Tu  1     .       +    CDS      22646 -     22807    144  ## ECS88_1310 hypothetical protein
                               +    Term     22931 -     22960    0.4 
                               -    Term     22914 -     22952    4.6 
    31    16 Tu  1     .       -    CDS      22965 -     23612    535  ## COG2095 Multiple antibiotic transporter
                               -    Prom     23800 -     23859    6.9 
    32    17 Tu  1     .       +    CDS      24089 -     26764   2858  ## COG1454 Alcohol dehydrogenase, class IV
                               +    Prom     26794 -     26853    2.6 
    33    18 Tu  1     .       +    CDS      26888 -     27073    136  ## ROD_08131 ISCro3 transposase
    34    19 Tu  1     .       +    CDS      27194 -     27784     45  ## COG3385 FOG: Transposase and inactivated derivatives
                               -    Term     28003 -     28051    8.1 
    35    20 Tu  1     .       -    CDS      28066 -     28683    350  ## COG1435 Thymidine kinase
                               -    Prom     28717 -     28776    5.6 
                               +    Prom     29193 -     29252    4.5 
    36    21 Tu  1     .       +    CDS      29288 -     29701    512  ## COG2916 DNA-binding protein H-NS
                               +    Term     29729 -     29757    3.0 
                               -    Term     29781 -     29822    8.8 
    37    22 Tu  1     .       -    CDS      29845 -     30753   1001  ## COG1210 UDP-glucose pyrophosphorylase
                               -    Prom     30890 -     30949    4.9 
                               -    Term     30877 -     30911   -0.4 
    38    23 Op  1   4/0.556   -    CDS      30955 -     31968    667  ## COG0784 FOG: CheY-like receiver
                               -    Term     31987 -     32016   -0.3 
    39    23 Op  2     .       -    CDS      32060 -     33004    379  ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily
                               -    Prom     33215 -     33274    3.2 
                               +    Prom     32974 -     33033    3.8 
    40    24 Op  1   4/0.556   +    CDS      33078 -     33536    200  ## PROTEIN SUPPORTED gi|90021194|ref|YP_527021.1| ribosomal protein L20
    41    24 Op  2     .       +    CDS      33586 -     34428    895  ## COG0788 Formyltetrahydrofolate hydrolase
                               +   TRNA      34588 -     34672   66.9  # Tyr GTA 0 0
                               +   TRNA      34882 -     34966   66.9  # Tyr GTA 0 0
Predicted protein(s)
>gi|223713580|gb|ACDM01000018.1| GENE     1         2  -       296    205     98 aa, chain - ## HITS:1  COG:yi52_g5 KEGG:ns NR:ns ## COG: yi52_g5 COG3039 # Protein_GI_number: 16129331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Escherichia coli K12 # 1      98       1      98     326     201  100.0  3e-52
MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETM
LRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSA
>gi|223713580|gb|ACDM01000018.1| GENE     2       337  -       468     57     43 aa, chain - ## HITS:1  COG:no KEGG:ECBD_2079 NR:ns ## KEGG: ECBD_2079 # Name: not_defined # Def: protein of unknown function DUF977 # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      43       1      43     119      67   86.0  1e-10
MAKVFTQEEREKIKGQVVELVRQSGRETLRQLETKEGANKFLI
>gi|223713580|gb|ACDM01000018.1| GENE     3       509  -      1393    372    294 aa, chain - ## HITS:1  COG:no KEGG:E2348C_1395 NR:ns ## KEGG: E2348C_1395 # Name: not_defined # Def: predicted replication protein # Organism: E.coli_0127 # Pathway: not_defined # 1     294      26     320     320     545   98.0  1e-153
MARLADYSNDEGVSWPAIETIRRQIGARSESTVKSAIAELAKEGWLTKEERKVGGRNVSN
IYRLNVEKLEAAAAARESYKPKRKISPAKNDPLTVDPSNIAPSTVDPSNFDGSTVDKKLP
IRGPMIDPDPSVLKPDPSDKRSSCPDASQPDPQTAEQDFLTRHPDAVVFSAKKRQWGSQE
DLVCAQWIWGRIVSLYEQAASYDGEITRPKEPNWTAWANDVRTMRMLDGRTHRQICEMFG
RLQRDSFWVKNIMSPAKLREKWDELVIRLGRSPAQRCVNHISEPDTEIPPGFRG
>gi|223713580|gb|ACDM01000018.1| GENE     4      1491  -      1916    442    141 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_2277 NR:ns ## KEGG: ECH74115_2277 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     141       1     141     141     271  100.0  6e-72
MKIKHEHIRMAMNVWAHPDGEKVPAAKITKAYFELGMTFPELYDDSHPEALARNTQKIFR
WLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYYREIVERRDRLVKDVDDFVAS
AVVLYDQMNRGGPAGNAVVMH
>gi|223713580|gb|ACDM01000018.1| GENE     5      1900  -      2181    154     93 aa, chain - ## HITS:1  COG:no KEGG:E2348C_1393 NR:ns ## KEGG: E2348C_1393 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1      93       1      93      93     181  100.0  1e-44
MEELRIFLNSLSSDEQRMFACECGTSIGYLRKALSKGQVLGASLCVLIERASNGEVTRQQ
LRPFDWMNIWPELEDTKTLTQPLSRSLIHENQA
>gi|223713580|gb|ACDM01000018.1| GENE     6      2282  -      2701    250    139 aa, chain + ## HITS:1  COG:ECs1941 KEGG:ns NR:ns ## COG: ECs1941 COG1396 # Protein_GI_number: 15831195 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 90     139      54     103     103      65   72.0  2e-11
MDKYEFRRQQLIKIRDEKCDGKAVNVARKIGREPSYVSRMLYPEGKKGKKRIADDMVEII
EESFGLPRGWMDGIVSSSTNTASSYETRVLTPRQRIFLDLLDELPESEADKLLKTLEEKK
QYYNMIYEEIRKKKAQNAS
>gi|223713580|gb|ACDM01000018.1| GENE     7      2886  -      3119    150     77 aa, chain + ## HITS:1  COG:no KEGG:E2348C_1391 NR:ns ## KEGG: E2348C_1391 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1      77       1      77      77     132  100.0  3e-30
MTAGFNFNNYAAGFCSATPALRGNEVNMDMLNLGNNESLVCGVFPNQDGTFTAMTYTRSK
TFKTEAGARRWLTRNTD
>gi|223713580|gb|ACDM01000018.1| GENE     8      3131  -      3532    309    133 aa, chain + ## HITS:1  COG:no KEGG:E2348C_1390 NR:ns ## KEGG: E2348C_1390 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1     133       1     133     133     242   99.0  3e-63
MEFKDLPVPFLEMASNVVRSQLATLDLSTVEKETIDTISGNVRRAFIGLYEEKRLFGGQN
SPENKNQANDEKLKHIIALLLEDAKRLQQLEPNAGTEARIWIAMKSLKCESSDYFKTTIK
TTQLSGELLKKLP
>gi|223713580|gb|ACDM01000018.1| GENE     9      3492  -      3770    186     92 aa, chain - ## HITS:1  COG:no KEGG:ECSE_1695 NR:ns ## KEGG: ECSE_1695 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      92      27     118     118     155  100.0  4e-37
MDKKQIEALQSIIEKQDEAIRILSYRTDMILNMLSALTAALGGTKTNVYREVVIQQIDKF
EKTIPGINAHLAEQEKDHALMAISSVALPKVE
>gi|223713580|gb|ACDM01000018.1| GENE    10      4329  -      4517    181     62 aa, chain + ## HITS:1  COG:no KEGG:ECSP_2138 NR:ns ## KEGG: ECSP_2138 # Name: not_defined # Def: putative inhibitor of cell division encoded by cryptic prophage CP-933P # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      62      36      97      97     126   98.0  3e-28
METLLPNVNTSEGCFEIGVTISNPVFTEDAINKRKHERELLNKICILSMLARLRPIQKGC
AQ
>gi|223713580|gb|ACDM01000018.1| GENE    11      4514  -      4705    171     63 aa, chain + ## HITS:1  COG:no KEGG:ECO111_1046 NR:ns ## KEGG: ECO111_1046 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      63       4      66      66     120  100.0  2e-26
MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGNCYPVDKVIHQDNNEIP
AGL
>gi|223713580|gb|ACDM01000018.1| GENE    12      4798  -      7269   1385    823 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_1416 NR:ns ## KEGG: EcE24377A_1416 # Name: not_defined # Def: exonuclease family protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     823       1     823     823    1559   96.0  0
MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV
CEDKPGIPRPALDSWDAEYMQENRWDEASASFVPVETESDPMNVTFDKLAPEVQNAVMVK
FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCK
PGAKWPEIQAEMRIWKKRREGERKEAGKYTSVVDLARARANQQHTENSTGKINPVIAAIH
REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPD
ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGTNQSATDTLSSPVPE
TDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGEKYGRANKLSGLDKALSAGAT
EITKEEYFARKNGTYSGSQQNTGASDTTAQPGSVKVTADEVNKIMQAANISQPDADELLA
VSRGEFVEGISDPNDPKWVKGNQTRDSVNQNQQETEQNDQKAEQNSPNALQNEPETKQPE
SVAQQEVEKVCTACGQTGGGNCPDCGAVMGDATYQETFDEEYQPEVQEDDPEEMEGAEHP
HKENTGGNQHHDSDNETGETADHSIKVNGHQEITSTSRTCDHLMIDLETMGKNPDAPIIS
IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL
LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKA
IDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLIPNQADF
>gi|223713580|gb|ACDM01000018.1| GENE    13      7334  -      7582     69     82 aa, chain + ## HITS:1  COG:no KEGG:ECS88_1328 NR:ns ## KEGG: ECS88_1328 # Name: not_defined # Def: phage excisionase # Organism: E.coli_S88 # Pathway: not_defined # 1      82       1      82      82     145  100.0  6e-34
MARLILLTEWAKEEFSEPVPTPSTLSKYAKAGMIFPLPKKVGRRWRVDPQARFVGMVNKP
EVIATDHPALKRILEDGAPAKI
>gi|223713580|gb|ACDM01000018.1| GENE    14      7560  -      8690    371    376 aa, chain + ## HITS:1  COG:ECs1757 KEGG:ns NR:ns ## COG: ECs1757 COG0582 # Protein_GI_number: 15831011 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1     376       1     376     376     762   99.0  0
MARPRKYKTDVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLA
RQQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFD
ERFGTRPLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAE
SAKKPQVRISRQRLTFDEWMMIYNAAEKNGYFLQRGMLLALMTGQRLSDICKMQFSDIRD
GYLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAKRGGM
VKPATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKILLGHSNQKMT
DIYNDVRGKEWKKLVI
>gi|223713580|gb|ACDM01000018.1| GENE    15      8736  -      9305    674    189 aa, chain - ## HITS:1  COG:ECs1756 KEGG:ns NR:ns ## COG: ECs1756 COG3047 # Protein_GI_number: 15831010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein W # Organism: Escherichia coli O157:H7 # 1     189      29     212     212     337   93.0  6e-93
MRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGT
RATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLS
LKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTAKYKSDGRKLAKGSYSDNVRLDPWV
FMFSAGYRF
>gi|223713580|gb|ACDM01000018.1| GENE    16      9746  -     10489    559    247 aa, chain + ## HITS:1  COG:no KEGG:JW1247 NR:ns ## KEGG: JW1247 # Name: yciC # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     247       1     247     247     352  100.0  5e-96
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGS
SGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIG
ASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSM
RLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
LYMLIRQ
>gi|223713580|gb|ACDM01000018.1| GENE    17     10519  -     11058    554    179 aa, chain + ## HITS:1  COG:ECs1754 KEGG:ns NR:ns ## COG: ECs1754 COG2917 # Protein_GI_number: 15831008 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Intracellular septation protein A # Organism: Escherichia coli O157:H7 # 1     179       1     179     179     291  100.0  6e-79
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVV
FGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN
LAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
>gi|223713580|gb|ACDM01000018.1| GENE    18     11163  -     11561    361    132 aa, chain + ## HITS:1  COG:yciA KEGG:ns NR:ns ## COG: yciA COG1607 # Protein_GI_number: 16129214 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Escherichia coli K12 # 1     132       1     132     132     264  100.0  3e-71
MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVE
GMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASEPIGQRYKATEALFKYVAV
DPEGKPRALPVE
>gi|223713580|gb|ACDM01000018.1| GENE    19     11601  -     12320    590    239 aa, chain - ## HITS:1  COG:tonB KEGG:ns NR:ns ## COG: tonB COG0810 # Protein_GI_number: 16129213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Escherichia coli K12 # 1     239       1     239     239     286  100.0  2e-77
MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQA
VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR
PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF
DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ
>gi|223713580|gb|ACDM01000018.1| GENE    20     12448  -     12840    271    130 aa, chain + ## HITS:1  COG:ECs1751 KEGG:ns NR:ns ## COG: ECs1751 COG2350 # Protein_GI_number: 15831005 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     130       1     130     130     253  100.0  4e-68
MHGLNKDIIFPLQIFALSNNVLYNFPEQGVVPVLYVIYAQDKADSLEKRLSVRPAHLARL
QLLHDEGRLLTAGPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEH
VSVKPFKKVF
>gi|223713580|gb|ACDM01000018.1| GENE    21     13260  -     14393    739    377 aa, chain + ## HITS:1  COG:kch KEGG:ns NR:ns ## COG: kch COG1226 # Protein_GI_number: 16129211 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Escherichia coli K12 # 1     377      41     417     417     682  100.0  0
MSVNLLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIAL
IYTLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMTSI
FGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDI
KQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVK
TVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLLNSGHGIFS
DNDELETKADSKESAQK
>gi|223713580|gb|ACDM01000018.1| GENE    22     14448  -     14732     57     94 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_1547 NR:ns ## KEGG: ECUMN_1547 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      94       1      94      94     144  100.0  1e-33
MSLRIWIHLANKNAGKALVSVGGGGIMTILLLHRVVNMKRSRTEVGRWRMQRQASRRKSR
WLEGQSRRNMRIHSIRKCILNKQRNSLLFAIYNI
>gi|223713580|gb|ACDM01000018.1| GENE    23     14764  -     16224   1234    486 aa, chain + ## HITS:1  COG:cls KEGG:ns NR:ns ## COG: cls COG1502 # Protein_GI_number: 16129210 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli K12 # 1     486       1     486     486     978  100.0  0
MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLAVGE
LHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAPLFKLCERRQGIAGVKGNQ
LQLMTESDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQVAESLMAAARRGIHCRLMLD
SAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRRMDLRQHRKMIMIDNYIAYTGSM
NMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIYSCDWEIETGKRILPPPPDVNIMPF
EQASGHTIHTIASGPGFPEDLIHQALLTAAYSAREYLIMTTPYFVPSDDLLHAICTAAQR
GVDVSIILPRKNDSMLVGWASRAFFTELLAAGVKIYQFEGGLLHTKSVLVDGELSLVGTV
NLDMRSLWLNFEITLAIDDKGFGADLAAVQDDYISRSRLLDARLWLKRPLWQRVAERLFY
FFSPLL
>gi|223713580|gb|ACDM01000018.1| GENE    24     16259  -     16588    519    109 aa, chain + ## HITS:1  COG:yciU KEGG:ns NR:ns ## COG: yciU COG3099 # Protein_GI_number: 16129209 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     109      27     135     135     201  100.0  2e-52
MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEH
VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE
>gi|223713580|gb|ACDM01000018.1| GENE    25     16641  -     17645    853    334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1     329       1     325     329 333  51 1e-90
MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESG
CGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTI
GEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI
LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL
GHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVF
RTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
>gi|223713580|gb|ACDM01000018.1| GENE    26     17642  -     18655    582    337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 12     317       4     311     329 228  40 3e-59
MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGS
GKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPY
MRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA
MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL
VMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCP
FQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVEELL
>gi|223713580|gb|ACDM01000018.1| GENE    27     18667  -     19575    925    302 aa, chain - ## HITS:1  COG:STM1744 KEGG:ns NR:ns ## COG: STM1744 COG1173 # Protein_GI_number: 16765088 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1     302       1     302     302     509   96.0  1e-144
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLS
QFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGT
LYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMA
RIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK
DR
>gi|223713580|gb|ACDM01000018.1| GENE    28     19590  -     20510    772    306 aa, chain - ## HITS:1  COG:ECs1744 KEGG:ns NR:ns ## COG: ECs1744 COG0601 # Protein_GI_number: 15830998 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     306       1     306     306     549  100.0  1e-156
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIM
TQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAA
LKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMVA
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
DPKIRY
>gi|223713580|gb|ACDM01000018.1| GENE    29     20596  -     22227   1706    543 aa, chain - ## HITS:1  COG:ECs1743 KEGG:ns NR:ns ## COG: ECs1743 COG4166 # Protein_GI_number: 15830997 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     543       1     543     543    1082  100.0  0
MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGV
PESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQDFV
YSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPY
FYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA
KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYY
YEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFG
WSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVN
QEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL
KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYI
VKH
>gi|223713580|gb|ACDM01000018.1| GENE    30     22646  -     22807    144     53 aa, chain + ## HITS:1  COG:no KEGG:ECS88_1310 NR:ns ## KEGG: ECS88_1310 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 12      53      63     104     104      76  100.0  2e-13
MSIFSDYSSSSEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT
>gi|223713580|gb|ACDM01000018.1| GENE    31     22965  -     23612    535    215 aa, chain - ## HITS:1  COG:ychE KEGG:ns NR:ns ## COG: ychE COG2095 # Protein_GI_number: 16129203 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli K12 # 1     215       1     215     215     377  100.0  1e-105
MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWI
SLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGV
VPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQ
TGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
>gi|223713580|gb|ACDM01000018.1| GENE    32     24089  -     26764   2858    891 aa, chain + ## HITS:1  COG:ECs1741_2 KEGG:ns NR:ns ## COG: ECs1741_2 COG1454 # Protein_GI_number: 15830995 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 448     872       1     425     444     860  100.0  0
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMG
IVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTA
IFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNA
LMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTF
DNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQGKELKAVQDVILKNGALNAAIVGQP
AYKIAELAGFSVPENTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEDAVEKAEKLV
AMGGIGHTSCLYTDQDNQPARVSYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLG
CGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHK
RALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSIVRKGAELANSFKPDVI
IALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSG
TGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAME
AYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLG
VCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIAD
HLGLSAPGDRTAAKIEKLLAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQ
CTGANPRYPLISELKQILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA
>gi|223713580|gb|ACDM01000018.1| GENE    33     26888  -     27073    136     61 aa, chain + ## HITS:1  COG:no KEGG:ROD_08131 NR:ns ## KEGG: ROD_08131 # Name: not_defined # Def: ISCro3 transposase # Organism: C.rodentium # Pathway: not_defined # 1      60       1      60     445     126   96.0  2e-28
MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVV
Q
>gi|223713580|gb|ACDM01000018.1| GENE    34     27194  -     27784     45    196 aa, chain + ## HITS:1  COG:yi41 KEGG:ns NR:ns ## COG: yi41 COG3385 # Protein_GI_number: 16132099 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 20     140     124     243     442      76   38.0  3e-14
MALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPV
MRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQ
KGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVK
ISKTRYPVKHSAAPLK
>gi|223713580|gb|ACDM01000018.1| GENE    35     28066  -     28683    350    205 aa, chain - ## HITS:1  COG:tdk KEGG:ns NR:ns ## COG: tdk COG1435 # Protein_GI_number: 16129199 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Escherichia coli K12 # 1     205       1     205     205     407  100.0  1e-114
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAK
LFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSEVVDQLDIPVLCYGLRTDF
RGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQAGRPYNEGEQVVIGGNERYVS
VCRKHYKEALQVDSLTAIQERHRHD
>gi|223713580|gb|ACDM01000018.1| GENE    36     29288  -     29701    512    137 aa, chain + ## HITS:1  COG:ECs1739 KEGG:ns NR:ns ## COG: ECs1739 COG2916 # Protein_GI_number: 15830993 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Escherichia coli O157:H7 # 1     137       1     137     137     197  100.0  4e-51
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ
YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK
KAMDEQGKSLDDFLIKQ
>gi|223713580|gb|ACDM01000018.1| GENE    37     29845  -     30753   1001    302 aa, chain - ## HITS:1  COG:ECs1738 KEGG:ns NR:ns ## COG: ECs1738 COG1210 # Protein_GI_number: 15830992 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1     302       1     302     302     589  100.0  1e-168
MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLV
THSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVL
CAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGV
VDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQ
LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGI
KK
>gi|223713580|gb|ACDM01000018.1| GENE    38     30955  -     31968    667    337 aa, chain - ## HITS:1  COG:STM1753_1 KEGG:ns NR:ns ## COG: STM1753_1 COG0784 # Protein_GI_number: 16765097 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Salmonella typhimurium LT2 # 1     134       1     134     134     248   91.0  2e-65
MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA
MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV
FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA
ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE
LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP
LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE
>gi|223713580|gb|ACDM01000018.1| GENE    39     32060  -     33004    379    314 aa, chain - ## HITS:1  COG:rssA KEGG:ns NR:ns ## COG: rssA COG1752 # Protein_GI_number: 16129195 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli K12 # 1     314       1     314     314     632  100.0  0
MATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVG
AAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSR
RFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVNPIPISLT
RALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT
APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVE
RKMDELLPLVRTNI
>gi|223713580|gb|ACDM01000018.1| GENE    40     33078  -     33536    200    152 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90021194|ref|YP_527021.1| ribosomal protein L20 [Saccharophagus degradans 2-40] # 4     127       3     131     134 81  37 6e-15
MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAA
ALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENG
QWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ
>gi|223713580|gb|ACDM01000018.1| GENE    41     33586  -     34428    895    280 aa, chain + ## HITS:1  COG:purU KEGG:ns NR:ns ## COG: purU COG0788 # Protein_GI_number: 16129193 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Escherichia coli K12 # 1     280       1     280     280     564  100.0  1e-161
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFND
STLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGN
HDTLRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVAR
FPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHT
YTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNRTIIL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:47:17 2011
 Seq name: gi|223713579|gb|ACDM01000019.1| Escherichia sp. 4_1_40B cont1.19, whole genome shotgun sequence 
 Length of sequence - 16248 bp
 Number of predicted genes - 13, with homology - 13
 Number of transcription units - 7, operones - 2 average op.length -  4.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       254 -       285    1.6 
     1     1 Op  1  12/0.000   -    CDS        305 -       982    925  ## COG2181 Nitrate reductase gamma subunit
     2     1 Op  2  12/0.000   -    CDS        982 -      1692    917  ## COG2180 Nitrate reductase delta subunit
     3     1 Op  3  13/0.000   -    CDS       1689 -      3227   1839  ## COG1140 Nitrate reductase beta subunit
     4     1 Op  4  10/0.000   -    CDS       3224 -      6967   4513  ## COG5013 Nitrate reductase alpha subunit
                               -    Prom      7157 -      7216    5.7 
                               -    Term      7306 -      7336    3.4 
     5     1 Op  5     .       -    CDS       7483 -      8874   1153  ## COG2223 Nitrate/nitrite transporter
                               -    Prom      8900 -      8959    1.8 
     6     1 Op  6     .       -    CDS       8969 -      9187    135  ## SSON_1954 hypothetical protein
                               -    Prom      9425 -      9484    3.1 
                               +    Prom      8994 -      9053    7.5 
     7     2 Op  1   8/0.000   +    CDS       9213 -     11009   1532  ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific
     8     2 Op  2     .       +    CDS      11002 -     11652    851  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
     9     3 Tu  1     .       -    CDS      11653 -     13047    845  ## ECDH10B_1279 hypothetical protein
                               -    Prom     13071 -     13130    3.3 
                               +    Prom     13139 -     13198    2.7 
    10     4 Tu  1     .       +    CDS      13232 -     13585    369  ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction
                               +    Term     13588 -     13633    1.9 
    11     5 Tu  1   2/1.000   -    CDS      13629 -     14303    528  ## COG3703 Uncharacterized protein involved in cation transport
                               -    Prom     14387 -     14446    2.9 
    12     6 Tu  1     .       -    CDS      14482 -     14712    276  ## COG4572 Putative cation transport regulator
                               -    Prom     14932 -     14991    5.0 
                               +    Prom     14876 -     14935    4.8 
    13     7 Tu  1     .       +    CDS      14982 -     16082   1174  ## COG0387 Ca2+/H+ antiporter
                               +    Term     16086 -     16140    7.8 
Predicted protein(s)
>gi|223713579|gb|ACDM01000019.1| GENE     1       305  -       982    925    225 aa, chain - ## HITS:1  COG:ECs1732 KEGG:ns NR:ns ## COG: ECs1732 COG2181 # Protein_GI_number: 15830986 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Escherichia coli O157:H7 # 1     225       1     225     225     422  100.0  1e-118
MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL
GIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRA
TTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGV
AFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQLVRARH
>gi|223713579|gb|ACDM01000019.1| GENE     2       982  -      1692    917    236 aa, chain - ## HITS:1  COG:ECs1731 KEGG:ns NR:ns ## COG: ECs1731 COG2180 # Protein_GI_number: 15830985 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Escherichia coli O157:H7 # 1     236       1     236     236     432  100.0  1e-121
MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLPKEDAHALGIFLRDLTTMDPLDAQA
QYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHGLQLNSRELPDHLPLYLEY
LAQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDLLLKLANTAIDSDKVAEKIAD
EARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRRFAGAVAPQYLNITTGGQH
>gi|223713579|gb|ACDM01000019.1| GENE     3      1689  -      3227   1839    512 aa, chain - ## HITS:1  COG:narH KEGG:ns NR:ns ## COG: narH COG1140 # Protein_GI_number: 16129188 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Escherichia coli K12 # 1     512       1     512     512    1093  100.0  0
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQE
KYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKS
QPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMYSQFENTFMMYL
PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGK
SEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVF
LDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLS
PIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTKPVLRALKRMLAMRHYKRAET
VDGKVDTRALEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTF
GDGCHGSDTKFNLFNSRRIDAIDVTSKTEPHP
>gi|223713579|gb|ACDM01000019.1| GENE     4      3224  -      6967   4513   1247 aa, chain - ## HITS:1  COG:narG KEGG:ns NR:ns ## COG: narG COG5013 # Protein_GI_number: 16129187 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Escherichia coli K12 # 1    1247       1    1247    1247    2600  100.0  0
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSW
KIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMK
MWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKN
YGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPE
SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQ
GTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAAD
LVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSL
LGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLA
NYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMII
VGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQ
RPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAP
QLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGS
SGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTC
LYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVG
HLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERF
TSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLA
PETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEH
VSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSN
GNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFN
SNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIG
GYAHLAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQESVK
>gi|223713579|gb|ACDM01000019.1| GENE     5      7483  -      8874   1153    463 aa, chain - ## HITS:1  COG:narK KEGG:ns NR:ns ## COG: narK COG2223 # Protein_GI_number: 16129186 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Escherichia coli K12 # 1     463       1     463     463     801  100.0  0
MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAV
NLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLG
FAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSV
MQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATS
KASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFI
GALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFL
TAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFF
IPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
>gi|223713579|gb|ACDM01000019.1| GENE     6      8969  -      9187    135     72 aa, chain - ## HITS:1  COG:no KEGG:SSON_1954 NR:ns ## KEGG: SSON_1954 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      72       1      72      72     140   98.0  1e-32
MSNNLNECDDTFWNGSILGYWLKYTHTRKELLLICRVVSRFTSVRVGILQHREKSHNFYE
VTVLTMGNDKYQ
>gi|223713579|gb|ACDM01000019.1| GENE     7      9213  -     11009   1532    598 aa, chain + ## HITS:1  COG:ECs1727 KEGG:ns NR:ns ## COG: ECs1727 COG3850 # Protein_GI_number: 15830981 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Escherichia coli O157:H7 # 1     598       1     598     598    1133  100.0  0
MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRL
LAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNR
ETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQ
PWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAG
LEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEF
TCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQ
LVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQG
DALPESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPV
KLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVTVAQNDNQVKLTVQDNGCG
VPENAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE
>gi|223713579|gb|ACDM01000019.1| GENE     8     11002  -     11652    851    216 aa, chain + ## HITS:1  COG:ECs1726 KEGG:ns NR:ns ## COG: ECs1726 COG2197 # Protein_GI_number: 15830980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     216       1     216     216     346  100.0  2e-95
MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDL
NMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKAL
HQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRL
DITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>gi|223713579|gb|ACDM01000019.1| GENE     9     11653  -     13047    845    464 aa, chain - ## HITS:1  COG:no KEGG:ECDH10B_1279 NR:ns ## KEGG: ECDH10B_1279 # Name: ychO, ychP # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1     464       1     464     464     896  100.0  0
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA
EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN
EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYD
NLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQN
NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP
PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEG
ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
>gi|223713579|gb|ACDM01000019.1| GENE    10     13232  -     13585    369    117 aa, chain + ## HITS:1  COG:ECs1724 KEGG:ns NR:ns ## COG: ECs1724 COG1553 # Protein_GI_number: 15830978 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Escherichia coli O157:H7 # 1     117       1     117     117     224  100.0  2e-59
MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEGYN
IQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVLTF
>gi|223713579|gb|ACDM01000019.1| GENE    11     13629  -     14303    528    224 aa, chain - ## HITS:1  COG:chaC KEGG:ns NR:ns ## COG: chaC COG3703 # Protein_GI_number: 16129181 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in cation transport # Organism: Escherichia coli K12 # 1     224      15     238     238     459  100.0  1e-129
MNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDEGPVWIFGYGSLMWNPALEFTESC
TGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTTGVAYRLPEETLEQELTLLWKRE
MITGCYLPTWCQLDLDDGRTVNAIVFIMDPRHPEYESDTRAQVIAPLIAAASGPLGTNAQ
YLFSLEQELIKLGMQDDGLNDLLVSVKKLLAENFPDGVLRPGFA
>gi|223713579|gb|ACDM01000019.1| GENE    12     14482  -     14712    276     76 aa, chain - ## HITS:1  COG:ECs1722 KEGG:ns NR:ns ## COG: ECs1722 COG4572 # Protein_GI_number: 15830976 # Func_class: R General function prediction only # Function: Putative cation transport regulator # Organism: Escherichia coli O157:H7 # 1      76       1      76      76      99  100.0  1e-21
MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV
KHEYAKGDDDKWHKKS
>gi|223713579|gb|ACDM01000019.1| GENE    13     14982  -     16082   1174    366 aa, chain + ## HITS:1  COG:ECs1721 KEGG:ns NR:ns ## COG: ECs1721 COG0387 # Protein_GI_number: 15830975 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1     366       1     366     366     573   99.0  1e-163
MSNAQEAVKTRHKETSLIFPVLALVVLFLWGSSQTLPVVIAINLLALIGILSSAFSVVRH
ADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVG
FSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMALPAANFSTGQALLVALISAA
MYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAHSSLWHAIWLIIHLIAVIAVTKM
NASSLETLLDSMNAPVAFTGFLVALLILSPEGLGALKAVLNNQVQRAMNLFFGSVLATIS
LTVPVVTLIAFMTGNELQFALGAPEMVVMVASLVLCHISFSTGRTNVLNGAAHLALFAAY
LMTIFA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:47:54 2011
 Seq name: gi|223713578|gb|ACDM01000020.1| Escherichia sp. 4_1_40B cont1.20, whole genome shotgun sequence 
 Length of sequence - 93099 bp
 Number of predicted genes - 93, with homology - 93
 Number of transcription units - 53, operones - 18 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2   6/0.111   -    CDS        964 -      1773    787  ## COG2912 Uncharacterized conserved protein
     3     1 Op  3   6/0.111   -    CDS       1777 -      2169    432  ## COG3094 Uncharacterized protein conserved in bacteria
     4     1 Op  4  32/0.000   -    CDS       2166 -      2999    482  ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase
     5     1 Op  5   9/0.000   -    CDS       2999 -      4081   1177  ## COG0216 Protein chain release factor A
     6     1 Op  6     .       -    CDS       4123 -      5379   1278  ## COG0373 Glutamyl-tRNA reductase
                               -    Prom      5418 -      5477    4.0 
                               +    Prom      5393 -      5452    6.0 
     7     2 Op  1  13/0.000   +    CDS       5593 -      6216    576  ## COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis
     8     2 Op  2  13/0.000   +    CDS       6216 -      7067    521  ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
                               +    Term      7087 -      7113    0.3 
     9     2 Op  3   3/0.444   +    CDS       7152 -      8165   1009  ## COG0462 Phosphoribosylpyrophosphate synthetase
                               +    Term      8178 -      8217    4.1 
    10     3 Tu  1     .       +    CDS       8317 -      9969   1736  ## COG0659 Sulfate permease and related transporters (MFS superfamily)
    11     4 Tu  1     .       -    CDS      10024 -     10302    269  ## LF82_2742 uncharacterized protein YchH
                               -    Prom     10355 -     10414    3.7 
                               +    Prom     10491 -     10550    4.2 
    12     5 Op  1  14/0.000   +    CDS      10580 -     11164    513  ## COG0193 Peptidyl-tRNA hydrolase
                               +    Term     11176 -     11208    0.7 
                               +    Prom     11189 -     11248    2.4 
    13     5 Op  2   1/0.778   +    CDS      11281 -     12372   1276  ## COG0012 Predicted GTPase, probable translation factor
                               +    Term     12433 -     12462    2.1 
    14     6 Tu  1     .       +    CDS      13141 -     16008   1624  ## COG3468 Type V secretory pathway, adhesin AidA
    15     7 Tu  1     .       -    CDS      16108 -     18027   1534  ## COG3284 Transcriptional activator of acetoin/glycerol metabolism
                               -    Prom     18060 -     18119    6.2 
                               +    Prom     18102 -     18161    4.9 
    16     8 Op  1  10/0.000   +    CDS      18255 -     19325   1105  ## COG2376 Dihydroxyacetone kinase
    17     8 Op  2   2/0.667   +    CDS      19336 -     19968    640  ## COG2376 Dihydroxyacetone kinase
    18     8 Op  3   1/0.778   +    CDS      19979 -     21397   1180  ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
                               +    Term     21407 -     21447    8.1 
                               +    Prom     21571 -     21630    5.5 
    19     9 Tu  1     .       +    CDS      21717 -     23414   1656  ## COG1626 Neutral trehalase
    20    10 Tu  1     .       -    CDS      23493 -     23789    111  ## B21_01181 hypothetical protein
                               -    Prom     23922 -     23981    4.7 
                               -    Term     24057 -     24098    6.2 
    21    11 Tu  1     .       -    CDS      24111 -     24365    259  ## COG2261 Predicted membrane protein
                               -    Prom     24480 -     24539    3.6 
                               +    Prom     24271 -     24330    2.3 
    22    12 Tu  1     .       +    CDS      24566 -     25300    664  ## COG5581 Predicted glycosyltransferase
                               -    Term     25139 -     25182    1.7 
    23    13 Op  1     .       -    CDS      25302 -     25913    594  ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
    24    13 Op  2     .       -    CDS      25852 -     26040     85  ## gi|293409572|ref|ZP_06653148.1| predicted protein
                               +    Prom     25926 -     25985    2.6 
    25    14 Op  1   1/0.778   +    CDS      26013 -     26927    769  ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF
                               +    Term     26962 -     26995   -0.4 
                               +    Prom     26941 -     27000    1.7 
    26    14 Op  2     .       +    CDS      27022 -     28758   1783  ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain
                               -    Term     29002 -     29033   -0.2 
    27    15 Op  1   7/0.056   -    CDS      29144 -     30214    896  ## COG0787 Alanine racemase
    28    15 Op  2     .       -    CDS      30224 -     31522   1405  ## COG0665 Glycine/D-amino acid oxidases (deaminating)
                               -    Prom     31568 -     31627    4.7 
                               +    Prom     31548 -     31607    4.4 
    29    16 Tu  1     .       +    CDS      31852 -     33384   1523  ## COG2719 Uncharacterized conserved protein
                               +    Term     33398 -     33426    1.0 
                               -    Term     33382 -     33418    2.3 
    30    17 Tu  1     .       -    CDS      33436 -     34155    772  ## COG2186 Transcriptional regulators
                               -    Prom     34188 -     34247    5.0 
                               +    Prom     34269 -     34328    5.5 
    31    18 Tu  1     .       +    CDS      34376 -     35917   1750  ## COG3067 Na+/H+ antiporter
                               +    Term     35928 -     35959    4.1 
                               +    Prom     35924 -     35983    4.2 
    32    19 Tu  1     .       +    CDS      36063 -     36593    572  ## COG1495 Disulfide bond formation protein DsbB
                               +    Term     36602 -     36632    3.0 
    33    20 Op  1   4/0.389   -    CDS      36639 -     37907    522  ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair
    34    20 Op  2     .       -    CDS      37907 -     38326    318  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
                               +    Prom     38620 -     38679    4.8 
    35    21 Tu  1     .       +    CDS      38699 -     39610    807  ## ECH74115_1668 hemolysin E
    36    22 Op  1   1/0.778   -    CDS      39817 -     40263    490  ## COG2983 Uncharacterized conserved protein
                               -    Prom     40287 -     40346    3.9 
    37    22 Op  2   2/0.667   -    CDS      40355 -     41014    664  ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
    38    22 Op  3     .       -    CDS      41086 -     41379    318  ## COG3100 Uncharacterized protein conserved in bacteria
                               -    Prom     41571 -     41630    6.6 
                               +    Prom     41528 -     41587    4.5 
    39    23 Tu  1     .       +    CDS      41621 -     42022    258  ## ECO111_1505 hypothetical protein
                               -    Term     42014 -     42054    2.1 
    40    24 Tu  1     .       -    CDS      42125 -     42487     60  ## JW1166 hypothetical protein
                               -    Prom     42711 -     42770    4.6 
                               +    Prom     42806 -     42865    4.5 
    41    25 Op  1  22/0.000   +    CDS      43013 -     43708    438  ## COG0850 Septum formation inhibitor
    42    25 Op  2  22/0.000   +    CDS      43732 -     44544    914  ## COG2894 Septum formation inhibitor-activating ATPase
    43    25 Op  3     .       +    CDS      44548 -     44814    465  ## COG0851 Septum formation topological specificity factor
                               +    Term     44840 -     44877    8.0 
                               -    Term     45142 -     45170    1.0 
    44    26 Op  1     .       -    CDS      45186 -     45398     69  ## COG3468 Type V secretory pathway, adhesin AidA
    45    26 Op  2     .       -    CDS      45407 -     45595     99  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom     45730 -     45789    7.1 
                               +    Prom     45779 -     45838    6.9 
    46    27 Op  1     .       +    CDS      45930 -     46103    101  ## ECDH10B_1224 hypothetical protein
    47    27 Op  2     .       +    CDS      46105 -     46449    345  ## EcSMS35_1978 hypothetical protein
    48    27 Op  3     .       +    CDS      46459 -     46788    496  ## ECO111_1498 hypothetical protein
                               +    Term     46802 -     46838    5.2 
    49    28 Tu  1     .       -    CDS      46871 -     47764    882  ## COG3468 Type V secretory pathway, adhesin AidA
    50    29 Tu  1     .       -    CDS      47972 -     49492    630  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom     49545 -     49604    6.0 
                               -    Term     49761 -     49795   -0.1 
    51    30 Tu  1     .       -    CDS      49892 -     50110    111  ## c1611 hypothetical protein
                               -    Prom     50139 -     50198    6.7 
    52    31 Tu  1     .       -    CDS      50242 -     51765    625  ## COG2200 FOG: EAL domain
                               -    Prom     52003 -     52062    4.4 
                               -    Term     51954 -     51985    1.8 
    53    32 Tu  1     .       -    CDS      52097 -     52273    240  ## B21_01150 hypothetical protein
                               -    Prom     52370 -     52429    4.9 
    54    33 Tu  1     .       -    CDS      52458 -     52724    207  ## B21_01149 hypothetical protein
                               -    Prom     52744 -     52803    3.7 
                               -    Term     52920 -     52962    3.3 
    55    34 Tu  1     .       -    CDS      53068 -     53304    215  ## B21_01147 hypothetical protein
                               -    Prom     53427 -     53486    6.5 
    56    35 Tu  1     .       +    CDS      53711 -     54829    524  ## COG2200 FOG: EAL domain
                               +    Term     54948 -     54995    4.6 
                               +    Prom     54908 -     54967    7.3 
    57    36 Tu  1     .       +    CDS      55034 -     55765    370  ## COG0789 Predicted transcriptional regulators
                               +    Prom     55797 -     55856    2.6 
    58    37 Tu  1     .       +    CDS      55986 -     56390    128  ## COG5562 Phage envelope protein
                               +    Term     56565 -     56604    1.2 
                               -    Term     57457 -     57496    4.1 
    59    38 Tu  1     .       -    CDS      57518 -     58768   1647  ## COG0538 Isocitrate dehydrogenases
                               -    Prom     58883 -     58942    4.4 
                               +    Prom     58889 -     58948    6.5 
    60    39 Op  1   3/0.444   +    CDS      58970 -     59593    497  ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
    61    39 Op  2   6/0.111   +    CDS      59603 -     60064    431  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
    62    39 Op  3   4/0.389   +    CDS      60118 -     61224   1286  ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
    63    39 Op  4   9/0.000   +    CDS      61260 -     61901    760  ## COG2915 Uncharacterized protein involved in purine metabolism
    64    39 Op  5   4/0.389   +    CDS      61905 -     63275   1612  ## COG0015 Adenylosuccinate lyase
                               +    Term     63285 -     63328    9.1 
                               +    Prom     63326 -     63385    7.4 
    65    40 Op  1  40/0.000   +    CDS      63444 -     64115    885  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
    66    40 Op  2   2/0.667   +    CDS      64115 -     65575   1196  ## COG0642 Signal transduction histidine kinase
    67    40 Op  3     .       +    CDS      65651 -     66772   1231  ## COG2850 Uncharacterized conserved protein
                               +    Term     66788 -     66825    9.1 
    68    41 Tu  1     .       -    CDS      66821 -     68047   1485  ## COG2195 Di- and tripeptidases
                               -    Prom     68154 -     68213    5.9 
                               +    Prom     68171 -     68230    4.0 
    69    42 Op  1  30/0.000   +    CDS      68315 -     69433   1202  ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components
    70    42 Op  2  36/0.000   +    CDS      69417 -     70274   1028  ## COG1176 ABC-type spermidine/putrescine transport system, permease component I
    71    42 Op  3  25/0.000   +    CDS      70271 -     71065    899  ## COG1177 ABC-type spermidine/putrescine transport system, permease component II
    72    42 Op  4     .       +    CDS      71062 -     72108   1494  ## COG0687 Spermidine/putrescine-binding periplasmic protein
                               +    Term     72113 -     72155    7.7 
    73    43 Op  1     .       +    CDS      72166 -     72627    307  ## JW5164 predicted inner membrane protein
    74    43 Op  2     .       +    CDS      72624 -     73412    310  ## JW1107 predicted inner membrane protein
    75    44 Op  1   5/0.167   -    CDS      73532 -     74371    742  ## COG0846 NAD-dependent protein deacetylases, SIR2 family
    76    44 Op  2   5/0.167   -    CDS      74387 -     75298    842  ## COG1940 Transcriptional regulator/sugar kinase
    77    44 Op  3  23/0.000   -    CDS      75327 -     76565   1303  ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component
    78    44 Op  4  23/0.000   -    CDS      76571 -     77272    226  ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16
    79    44 Op  5     .       -    CDS      77265 -     78464   1312  ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component
                               -    Prom     78490 -     78549    4.4 
                               +    Prom     78538 -     78597    2.5 
    80    45 Tu  1     .       +    CDS      78726 -     79799   1082  ## COG4763 Predicted membrane protein
                               +    Prom     79803 -     79862    2.7 
    81    46 Tu  1     .       +    CDS      79927 -     83373   3852  ## COG1197 Transcription-repair coupling factor (superfamily II helicase)
                               +    Prom     83438 -     83497    4.9 
    82    47 Tu  1     .       +    CDS      83520 -     84479    865  ## COG1376 Uncharacterized protein conserved in bacteria
                               +    Term     84540 -     84573    0.8 
                               -    Term     84483 -     84522   10.2 
    83    48 Tu  1     .       -    CDS      84561 -     84818    276  ## ECO103_1157 hypothetical protein
                               -    Prom     84927 -     84986    9.8 
                               +    Prom     84863 -     84922   10.0 
    84    49 Tu  1     .       +    CDS      85059 -     85691    469  ## COG1309 Transcriptional regulator
                               +    Term     85738 -     85774   -0.4 
                               -    Term     85691 -     85730    3.1 
    85    50 Tu  1     .       -    CDS      85753 -     86292    571  ## COG3134 Predicted outer membrane lipoprotein
                               -    Prom     86353 -     86412    2.1 
    86    51 Tu  1     .       -    CDS      86502 -     87806   1372  ## COG1252 NADH dehydrogenase, FAD-containing subunit
                               -    Prom     87846 -     87905    5.2 
                               -    Term     88146 -     88200   -0.8 
    87    52 Op  1   2/0.667   -    CDS      88206 -     88748    562  ## COG3150 Predicted esterase
    88    52 Op  2   5/0.167   -    CDS      88771 -     89796   1034  ## COG1472 Beta-glucosidase-related glycosidases
    89    52 Op  3   6/0.111   -    CDS      89807 -     90631    287  ## COG0510 Predicted choline kinase involved in LPS biosynthesis
    90    52 Op  4   6/0.111   -    CDS      90612 -     91253    585  ## COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)
    91    52 Op  5   4/0.389   -    CDS      91267 -     91644    197  ## COG5633 Predicted periplasmic lipoprotein
    92    52 Op  6     .       -    CDS      91647 -     92006    470  ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
                               +    Prom     92184 -     92243    4.2 
    93    53 Tu  1     .       +    CDS      92340 -     93099    663  ## COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Predicted protein(s)
>gi|223713578|gb|ACDM01000020.1| GENE     1        74  -       928   1086    284 aa, chain - ## HITS:1  COG:ECs1720 KEGG:ns NR:ns ## COG: ECs1720 COG2877 # Protein_GI_number: 15830974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     284       1     284     284     567   99.0  1e-162
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK
ANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLAR
QTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVD
MLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
>gi|223713578|gb|ACDM01000020.1| GENE     2       964  -      1773    787    269 aa, chain - ## HITS:1  COG:ECs1719 KEGG:ns NR:ns ## COG: ECs1719 COG2912 # Protein_GI_number: 15830973 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     269       1     269     269     521  100.0  1e-148
MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSLAKEEISQLLPLEEQLE
KLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLGAVLLWVANRLDLPLLPVI
FPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNISPSAELFYEDLDEADNIEVI
RKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEIRDRGLIYAQLDCEHVALNDLSY
FVEQCPEDPISEMIRAQINNIAHKHIVLH
>gi|223713578|gb|ACDM01000020.1| GENE     3      1777  -      2169    432    130 aa, chain - ## HITS:1  COG:ychQ KEGG:ns NR:ns ## COG: ychQ COG3094 # Protein_GI_number: 16129176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     130       1     130     130     207  100.0  5e-54
MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIVPPVVDTLLLLSGIALM
AKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQARIIAFPLALVVLYIIIK
LATTKVPLLG
>gi|223713578|gb|ACDM01000020.1| GENE     4      2166  -      2999    482    277 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 7     274      23     289     294 190  40 3e-47
MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLT
RRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGT
GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMI
VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW
QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYYQ
>gi|223713578|gb|ACDM01000020.1| GENE     5      2999  -      4081   1177    360 aa, chain - ## HITS:1  COG:ECs1716 KEGG:ns NR:ns ## COG: ECs1716 COG0216 # Protein_GI_number: 15830970 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Escherichia coli O157:H7 # 1     360       1     360     360     630   99.0  0
MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE
DIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG
GDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESG
GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTT
DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS
GDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIREHQADQLAALSEQE
>gi|223713578|gb|ACDM01000020.1| GENE     6      4123  -      5379   1278    418 aa, chain - ## HITS:1  COG:ECs1715 KEGG:ns NR:ns ## COG: ECs1715 COG0373 # Protein_GI_number: 15830969 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Escherichia coli O157:H7 # 1     418       1     418     418     732  100.0  0
MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVE
EQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQ
VKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESL
STVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEVGAEVIALSDIDERL
READIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSV
DDLQSIISHNLAQRKAAAVEAETIVAQETSEFMAWLRAQSASETIREYRSQAEQVRDELT
AKALAALEQGGDAQAIMQDLAWKLTNRLIHAPTKSLQQAARDGDNERLNILRDSLGLE
>gi|223713578|gb|ACDM01000020.1| GENE     7      5593  -      6216    576    207 aa, chain + ## HITS:1  COG:ECs1714 KEGG:ns NR:ns ## COG: ECs1714 COG3017 # Protein_GI_number: 15830968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein involved in outer membrane biogenesis # Organism: Escherichia coli O157:H7 # 1     207       1     207     207     405  100.0  1e-113
MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQDVRNLNQYQTRGAFAY
ISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEE
MIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKT
QPAMPANMELTDGGQRIKLKMDNWIVK
>gi|223713578|gb|ACDM01000020.1| GENE     8      6216  -      7067    521    283 aa, chain + ## HITS:1  COG:ECs1713 KEGG:ns NR:ns ## COG: ECs1713 COG1947 # Protein_GI_number: 15830967 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     283       1     283     283     563  100.0  1e-161
MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGV
EHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNH
LWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIP
TPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGT
GACVFAEFDTESEARQVLEQAPEWLNGFVAKGANLSPLHRAML
>gi|223713578|gb|ACDM01000020.1| GENE     9      7152  -      8165   1009    337 aa, chain + ## HITS:1  COG:ECs1712 KEGG:ns NR:ns ## COG: ECs1712 COG0462 # Protein_GI_number: 15830966 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Escherichia coli O157:H7 # 23     337       1     315     315     595   99.0  1e-170
MPGPHSFRQILSTNGRMPEVLLVPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDG
EVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQD
RRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQ
LNLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLS
DEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH
>gi|223713578|gb|ACDM01000020.1| GENE    10      8317  -      9969   1736    550 aa, chain + ## HITS:1  COG:ECs1711 KEGG:ns NR:ns ## COG: ECs1711 COG0659 # Protein_GI_number: 15830965 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Escherichia coli O157:H7 # 1     550       1     550     550     919  100.0  0
MPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAG
IVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIE
YIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIG
IVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNG
IPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHK
ANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAP
LLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISV
GIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRI
VILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFF
PNRRAAMADL
>gi|223713578|gb|ACDM01000020.1| GENE    11     10024  -     10302    269     92 aa, chain - ## HITS:1  COG:no KEGG:LF82_2742 NR:ns ## KEGG: LF82_2742 # Name: ychH # Def: uncharacterized protein YchH # Organism: E.coli_LF82 # Pathway: not_defined # 1      92       1      92      92     152  100.0  3e-36
MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG
ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS
>gi|223713578|gb|ACDM01000020.1| GENE    12     10580  -     11164    513    194 aa, chain + ## HITS:1  COG:ECs1709 KEGG:ns NR:ns ## COG: ECs1709 COG0193 # Protein_GI_number: 15830963 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Escherichia coli O157:H7 # 1     194       1     194     194     370  100.0  1e-103
MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVR
LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI
ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG
LTKATNRLHAFKAQ
>gi|223713578|gb|ACDM01000020.1| GENE    13     11281  -     12372   1276    363 aa, chain + ## HITS:1  COG:ECs1708 KEGG:ns NR:ns ## COG: ECs1708 COG0012 # Protein_GI_number: 15830962 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Escherichia coli O157:H7 # 1     363       1     363     363     721  100.0  0
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP
QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN
PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA
LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT
APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
FNV
>gi|223713578|gb|ACDM01000020.1| GENE    14     13141  -     16008   1624    955 aa, chain + ## HITS:1  COG:ycgV_2 KEGG:ns NR:ns ## COG: ycgV_2 COG3468 # Protein_GI_number: 16129165 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 543     955       1     413     413     676  100.0  0
MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLLIAADTGSQYGTNITIN
DGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVNDASGYAKGIIIQGKNSSLT
ANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSN
GIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNNANGAARFTATDLTIDVQGYSAM
GINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSANALTVDVTGAAANGVEVRGGTTTI
GADSHISSAQGGGLVTSGSDAIINFTGTAAQRNSIFSGGSYGASAQTATAVVNMQNTDIT
VDRNGSLALGLWALSGGRITGDSLAITGAAGARGIYAMTNSQIDLTSDLVIDMSTPDQMA
IATQHDDGYAASRINASGRMLINGSVLSKGGLINLDMHPGSVWTGSSLSDNVNGGKLDVA
MNNSVWNVTSNSNLDTLALSHSTVDFASHGSTAGTFATLNVENLSGNSTFIMRADVVGEG
NGVNNKGDLLNISGSSAGNHVLAIRNQGSEATTGNEVLTVVKTTDGAASFSASSQVELGG
YLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAG
GNYLNVGYLLNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSG
IQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVI
KASRQKNSFHVLDSQNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQ
NEMTMKASNGLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLL
NNSREKYSFKGNGWNNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF
>gi|223713578|gb|ACDM01000020.1| GENE    15     16108  -     18027   1534    639 aa, chain - ## HITS:1  COG:ycgU KEGG:ns NR:ns ## COG: ycgU COG3284 # Protein_GI_number: 16129164 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; K Transcription # Function: Transcriptional activator of acetoin/glycerol metabolism # Organism: Escherichia coli K12 # 1     639       4     642     642    1269  100.0  0
MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA
LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL
AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA
IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA
TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI
LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG
KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL
FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ
LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND
FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA
QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV
>gi|223713578|gb|ACDM01000020.1| GENE    16     18255  -     19325   1105    356 aa, chain + ## HITS:1  COG:ycgT KEGG:ns NR:ns ## COG: ycgT COG2376 # Protein_GI_number: 16129163 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli K12 # 1     356      11     366     366     729   99.0  0
MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVEGKVALLSGGGSGHEPMH
CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL
HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL
NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD
TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL
TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK
>gi|223713578|gb|ACDM01000020.1| GENE    17     19336  -     19968    640    210 aa, chain + ## HITS:1  COG:ECs1704 KEGG:ns NR:ns ## COG: ECs1704 COG2376 # Protein_GI_number: 15830958 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli O157:H7 # 1     210       1     210     210     394   98.0  1e-110
MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNRGFSKVVEKLPAIADKD
IGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLTLEELYQMFRDGADGVISR
GKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASSIAESAAQSTITMQARKGRAS
YLGERSIGHQDPGATSVMFMMQMLALAAKE
>gi|223713578|gb|ACDM01000020.1| GENE    18     19979  -     21397   1180    472 aa, chain + ## HITS:1  COG:ycgC_3 KEGG:ns NR:ns ## COG: ycgC_3 COG1080 # Protein_GI_number: 16129161 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 258     472       1     215     215     416  100.0  1e-116
MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNPIGTDAVKVMEAIESVA
DADHVLVMMDMGSALLSAETALELLAPEIAAKVRLCAAPLVEGTLAATVSAASGADIDKV
IFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAVVIKNRNGLHVRPASRLVYTL
STFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLIAKGPEAEEALIAFRQLAEDNFG
ETEEVAPPTLRPVPPVSGKAFYYQPVLCTVQAKSTLTVEEEQDRLRQAIDFTLLDLMTLT
AKAEASGLDDIAAIFSGHHTLLDDPELLAAASELLQHEHCTAEYAWQQVLKELSQQYQQL
DDEYLQARYIDVDDLLHRTLVHLTQTKEELPQFNSPTILLAENIYPSTVLQLDPAVVKGI
CLSAGSPVSHSALIARELGIGWICQQGEKLYAIQPEETLTLDVKTQRFNRQG
>gi|223713578|gb|ACDM01000020.1| GENE    19     21717  -     23414   1656    565 aa, chain + ## HITS:1  COG:treA KEGG:ns NR:ns ## COG: treA COG1626 # Protein_GI_number: 16129160 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli K12 # 1     565       1     565     565    1102   99.0  0
MKSPAPSRPQKMALIPACIFLCFAALSVQAEETPVTPQPPDILLGPLFNDVQNAKLFPDQ
KTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPKEGEKYVPPEGQSLREHID
GLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVANM
VANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAY
WMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIY
RDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAM
ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRAN
KMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHF
LTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQPCD
NVPATRPTVKSATTQPSTKEAQPTP
>gi|223713578|gb|ACDM01000020.1| GENE    20     23493  -     23789    111     98 aa, chain - ## HITS:1  COG:no KEGG:B21_01181 NR:ns ## KEGG: B21_01181 # Name: ycgY # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      98      49     146     146     200  100.0  1e-50
MLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALYSQRRRK
SPGDESETLTRRNDAIFGNHVWQTFAQYFPPGLEKPSV
>gi|223713578|gb|ACDM01000020.1| GENE    21     24111  -     24365    259     84 aa, chain - ## HITS:1  COG:ymgE KEGG:ns NR:ns ## COG: ymgE COG2261 # Protein_GI_number: 16129158 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1      84       1      84      84     109  100.0  1e-24
MGIIAWIIFDLIAGIIAKLIMPGRDGGGFFLTCILGIVGAVVGGWLATMFGIGGSISGFN
LHSFLVAVVGAILVLGIFRLLRRE
>gi|223713578|gb|ACDM01000020.1| GENE    22     24566  -     25300    664    244 aa, chain + ## HITS:1  COG:ycgR KEGG:ns NR:ns ## COG: ycgR COG5581 # Protein_GI_number: 16129157 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase # Organism: Escherichia coli K12 # 1     244       1     244     244     482  100.0  1e-136
MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAE
DNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRIS
APLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWG
VFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKAD
KVRD
>gi|223713578|gb|ACDM01000020.1| GENE    23     25302  -     25913    594    203 aa, chain - ## HITS:1  COG:mltE KEGG:ns NR:ns ## COG: mltE COG0741 # Protein_GI_number: 16129156 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1     203      39     241     241     405   99.0  1e-113
MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAI
IAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAY
LNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHV
ARNHPAPQAPRYIYKLEQALDAM
>gi|223713578|gb|ACDM01000020.1| GENE    24     25852  -     26040     85     62 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|293409572|ref|ZP_06653148.1| ## NR: gi|293409572|ref|ZP_06653148.1| predicted protein [Escherichia coli B354] # 1      62       1      62      62     127  100.0  2e-28
MGQLSETETWQFLADNRNEMYIMPLRCAVVTSTAIPGYKDRRSEIEMVCLFDCVISGLFI
KA
>gi|223713578|gb|ACDM01000020.1| GENE    25     26013  -     26927    769    304 aa, chain + ## HITS:1  COG:ldcA KEGG:ns NR:ns ## COG: ldcA COG1619 # Protein_GI_number: 16129155 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Escherichia coli K12 # 1     304       1     304     304     628  100.0  1e-180
MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL
ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN
VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML
ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND
YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP
VLKM
>gi|223713578|gb|ACDM01000020.1| GENE    26     27022  -     28758   1783    578 aa, chain + ## HITS:1  COG:STM1801 KEGG:ns NR:ns ## COG: STM1801 COG3263 # Protein_GI_number: 16765142 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Salmonella typhimurium LT2 # 1     577       1     577     577     960   92.0  0
MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF
AYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLI
EGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHE
SNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIFSLTTA
LEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAI
PALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLEN
ARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWEQFVYQ
LSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERDLPALG
KLFSQSPPVALDQRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEIVQQLLGAA
PVVGDQVEFAGMIWTVAEKEDNEVLKIGVRVAEEEAES
>gi|223713578|gb|ACDM01000020.1| GENE    27     29144  -     30214    896    356 aa, chain - ## HITS:1  COG:dadX KEGG:ns NR:ns ## COG: dadX COG0787 # Protein_GI_number: 16129153 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli K12 # 1     356       1     356     356     714  100.0  0
MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN
LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI
YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA
EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII
GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS
MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVTV
>gi|223713578|gb|ACDM01000020.1| GENE    28     30224  -     31522   1405    432 aa, chain - ## HITS:1  COG:ECs1684 KEGG:ns NR:ns ## COG: ECs1684 COG0665 # Protein_GI_number: 15830938 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli O157:H7 # 1     432       1     432     432     893  100.0  0
MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV
PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK
ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA
EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCG
DEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIA
ITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPD
GTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARYSRGFT
PSRPGHLHGAHS
>gi|223713578|gb|ACDM01000020.1| GENE    29     31852  -     33384   1523    510 aa, chain + ## HITS:1  COG:ycgB KEGG:ns NR:ns ## COG: ycgB COG2719 # Protein_GI_number: 16129151 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     510       1     510     510    1038  100.0  0
MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAY
SSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM
AHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALM
NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ
ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE
GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF
PDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEE
GYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR
LWGFDVMLEQQNEDGSIELLERCPPRMGNL
>gi|223713578|gb|ACDM01000020.1| GENE    30     33436  -     34155    772    239 aa, chain - ## HITS:1  COG:ECs1682 KEGG:ns NR:ns ## COG: ECs1682 COG2186 # Protein_GI_number: 15830936 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     492  100.0  1e-139
MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGW
LTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQH
PDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYF
ANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR
>gi|223713578|gb|ACDM01000020.1| GENE    31     34376  -     35917   1750    513 aa, chain + ## HITS:1  COG:ECs1681 KEGG:ns NR:ns ## COG: ECs1681 COG3067 # Protein_GI_number: 15830935 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1     513       1     513     513     897  100.0  0
MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAGWLLVAEFIFTLAMALK
CYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRL
LLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRTEDTDLQD
DSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFL
RMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKVREVLQQFDDQSRHQRTRQDKIRLI
VQAIIGVWLVTALALHLAEVGLIGLSVIILATSLTGVTDEHAIGKAFTESLPFTALLTVF
FSVVAVIIDQQLFSPIIQFVLQASEHAQLSLFYIFNGLLSSISDNVFVGTIYINEAKAAM
ESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALP
YTLVLTLVGLLCVEFTLAPVTEWFMQMGWIATL
>gi|223713578|gb|ACDM01000020.1| GENE    32     36063  -     36593    572    176 aa, chain + ## HITS:1  COG:ECs1680 KEGG:ns NR:ns ## COG: ECs1680 COG1495 # Protein_GI_number: 15830934 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     330  100.0  1e-90
MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLCIYERCALFGVLGAALI
GAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWV
PQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKAKKRDLFGR
>gi|223713578|gb|ACDM01000020.1| GENE    33     36639  -     37907    522    422 aa, chain - ## HITS:1  COG:umuC KEGG:ns NR:ns ## COG: umuC COG0389 # Protein_GI_number: 16129147 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1     422       1     422     422     876  100.0  0
MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD
LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG
REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP
VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF
APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN
EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL
FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR
VK
>gi|223713578|gb|ACDM01000020.1| GENE    34     37907  -     38326    318    139 aa, chain - ## HITS:1  COG:ECs1678 KEGG:ns NR:ns ## COG: ECs1678 COG1974 # Protein_GI_number: 15830932 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1     139       1     139     139     257  100.0  5e-69
MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDS
MIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITIS
SEDTLDVFGVVIHVVKAMR
>gi|223713578|gb|ACDM01000020.1| GENE    35     38699  -     39610    807    303 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_1668 NR:ns ## KEGG: ECH74115_1668 # Name: hlyE # Def: hemolysin E # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     303      49     351     351     511   99.0  1e-143
MTEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASV
LVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVL
DDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAG
AAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAK
LKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMINTCNEYQKRHGKKTLFEV
PEV
>gi|223713578|gb|ACDM01000020.1| GENE    36     39817  -     40263    490    148 aa, chain - ## HITS:1  COG:ECs1676 KEGG:ns NR:ns ## COG: ECs1676 COG2983 # Protein_GI_number: 15830930 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     148      11     158     158     300   99.0  7e-82
MSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQC
RNYERRFEFEPDCIKLTRENLPTFEWLPMICAYRLLAEGKDLPAWHPLLTGSKAAMHGER
ISVRHIAVKESEVIDWQDHILNKPDWAQ
>gi|223713578|gb|ACDM01000020.1| GENE    37     40355  -     41014    664    219 aa, chain - ## HITS:1  COG:ycgM KEGG:ns NR:ns ## COG: ycgM COG0179 # Protein_GI_number: 16129143 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Escherichia coli K12 # 1     219       1     219     219     447  100.0  1e-125
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAI
PSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEK
AKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFF
TLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
>gi|223713578|gb|ACDM01000020.1| GENE    38     41086  -     41379    318     97 aa, chain - ## HITS:1  COG:ECs1674 KEGG:ns NR:ns ## COG: ECs1674 COG3100 # Protein_GI_number: 15830928 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      97      12     108     108     176  100.0  1e-44
MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMILPLDGRKKLVNADIEKV
KQALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK
>gi|223713578|gb|ACDM01000020.1| GENE    39     41621  -     42022    258    133 aa, chain + ## HITS:1  COG:no KEGG:ECO111_1505 NR:ns ## KEGG: ECO111_1505 # Name: ycgK # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     133       1     133     133     236   98.0  3e-61
MKIKSIRKAVLLLALLTSTSFAAGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTFYAKKGQ
KVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVLQTRNDARK
NKTKKYNVDIQIK
>gi|223713578|gb|ACDM01000020.1| GENE    40     42125  -     42487     60    120 aa, chain - ## HITS:1  COG:no KEGG:JW1166 NR:ns ## KEGG: JW1166 # Name: ycgJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     120       3     122     122     240  100.0  9e-63
MMRIFYIGLSGVGMMFSSMASGNDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEK
AAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMCRE
>gi|223713578|gb|ACDM01000020.1| GENE    41     43013  -     43708    438    231 aa, chain + ## HITS:1  COG:minC KEGG:ns NR:ns ## COG: minC COG0850 # Protein_GI_number: 16129139 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Escherichia coli K12 # 1     231       1     231     231     442  100.0  1e-124
MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLKHAPVVLNVSALEDPVN
WSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGKEKAPRPAPTPQAPAQNTT
PVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGD
RETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARLQLVENALTVQPLN
>gi|223713578|gb|ACDM01000020.1| GENE    42     43732  -     44544    914    270 aa, chain + ## HITS:1  COG:ECs1669 KEGG:ns NR:ns ## COG: ECs1669 COG2894 # Protein_GI_number: 15830923 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Escherichia coli O157:H7 # 1     270       1     270     270     506  100.0  1e-143
MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF
VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD
SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL
TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA
DTVERLLGEERPFRFIEEEKKGFLKRLFGG
>gi|223713578|gb|ACDM01000020.1| GENE    43     44548  -     44814    465     88 aa, chain + ## HITS:1  COG:ECs1668 KEGG:ns NR:ns ## COG: ECs1668 COG0851 # Protein_GI_number: 15830922 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation topological specificity factor # Organism: Escherichia coli O157:H7 # 1      88       1      88      88     148  100.0  2e-36
MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEM
VTVQLEQKDGDISILELNVTLPEAEELK
>gi|223713578|gb|ACDM01000020.1| GENE    44     45186  -     45398     69     70 aa, chain - ## HITS:1  COG:ECs3515 KEGG:ns NR:ns ## COG: ECs3515 COG3468 # Protein_GI_number: 15832769 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 1      70    1502    1571    1571     129   95.0  2e-30
MRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAAIKASFSSTFSGHLGVGYSHGAGVESPW
NAVAGVNWSF
>gi|223713578|gb|ACDM01000020.1| GENE    45     45407  -     45595     99     62 aa, chain - ## HITS:1  COG:ZypjA KEGG:ns NR:ns ## COG: ZypjA COG3468 # Protein_GI_number: 15803170 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 EDL933 # 23      61    1415    1453    1528      80   94.0  8e-16
MNPLVWCLRADVAAELRSLRRYYHLSNGMESKSVDTRSIYRELGATLSYNMRLGNGMEMN
PG
>gi|223713578|gb|ACDM01000020.1| GENE    46     45930  -     46103    101     57 aa, chain + ## HITS:1  COG:no KEGG:ECDH10B_1224 NR:ns ## KEGG: ECDH10B_1224 # Name: ymgI, ECK4403 # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1      57       1      57      57      74  100.0  1e-12
MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIEDEIIVCATYLIPDI
>gi|223713578|gb|ACDM01000020.1| GENE    47     46105  -     46449    345    114 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_1978 NR:ns ## KEGG: EcSMS35_1978 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     114       1     114     114     110  100.0  1e-23
MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGA
VTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK
>gi|223713578|gb|ACDM01000020.1| GENE    48     46459  -     46788    496    109 aa, chain + ## HITS:1  COG:no KEGG:ECO111_1498 NR:ns ## KEGG: ECO111_1498 # Name: ymgD # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     109       1     109     109     195  100.0  3e-49
MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNA
SVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK
>gi|223713578|gb|ACDM01000020.1| GENE    49     46871  -     47764    882    297 aa, chain - ## HITS:1  COG:b1170 KEGG:ns NR:ns ## COG: b1170 COG3468 # Protein_GI_number: 16129133 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1     297      42     338     338     570  100.0  1e-163
MRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGGDLLT
GGFTDSDSWRLGVMAGYARDYNLTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYI
DSWAQYSWFKNSVKGDELAYESYSAKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQ
AIWMGVDHNAHTEANGSRIENDANNNIQTRLGFRTFIRTQEKNSGPHGDDFEPFVEMNWI
HNSKDFAVSMNGVKVEQDGASNLGEIKLGVNGNLNPAASVWGMWACSWVIMATMTPQ
>gi|223713578|gb|ACDM01000020.1| GENE    50     47972  -     49492    630    506 aa, chain - ## HITS:1  COG:b1169 KEGG:ns NR:ns ## COG: b1169 COG3468 # Protein_GI_number: 16129132 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1     506       1     506     506     780   99.0  0
MKLKKLPGFSLGLIALAVGNAYATQLLDDYSIISYMTDEESPIEIKDNNPISNGEYLTTE
DESHAVKVDDGVTGYINNASVMTSGDGSYGISVDSQNKVLYISDSDIKTSGSVSDKENGG
ITASAVVSEFGGTIFMNGDNSVESGGAYSAGLLSQVNDSEKMVNNTRLETTDKTNIVTSG
ENAVGVLACSSPGESRTCVDAVDDEVSDSNSYEVISRADLKMNGGSITTNGINSYGAYAN
GKKAYINLDYVALETVADGSYAVAIRQGNIDIKNSSITTTGTKAPIAKIYNGGELFFSNV
TAVSKQDKGISIDASNIDSQAKIALLSVELSSALDSIDVNKTTTDVSILNRSIITPGNNI
LVNNTGGDLNIISSDSILNGATKLVSGTTTLKLSENTIWNMKDDSVVTHLTNSDSIINLS
YDDGQTFTQGKTLTVKGNYVGNNGQLNIRTVLGDDKSATDRLIVEGNTSGSTTVYVKNAG
GSGAATLNGIELITVNGDESPADAFR
>gi|223713578|gb|ACDM01000020.1| GENE    51     49892  -     50110    111     72 aa, chain - ## HITS:1  COG:no KEGG:c1611 NR:ns ## KEGG: c1611 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1      72      13      84      84     108   97.0  5e-23
MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTINLLNALVWLAINLVNR
LRERLVNHRDQQ
>gi|223713578|gb|ACDM01000020.1| GENE    52     50242  -     51765    625    507 aa, chain - ## HITS:1  COG:ycgG_2 KEGG:ns NR:ns ## COG: ycgG_2 COG2200 # Protein_GI_number: 16129131 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 237     507       1     271     271     551   99.0  1e-156
MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAV
NIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLL
LAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTG
DVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLD
RYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFI
PLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRD
SFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHID
YIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNNITFQQG
YYFYKPVTYIDLVKIILSKPKVKVVVE
>gi|223713578|gb|ACDM01000020.1| GENE    53     52097  -     52273    240     58 aa, chain - ## HITS:1  COG:no KEGG:B21_01150 NR:ns ## KEGG: B21_01150 # Name: ymgC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      58      25      82      82      96  100.0  3e-19
MTHGYVDSHIIDQALRLRLKDETSVILSDLYLQILQYIEMHKTTLTDIIINDRESVLS
>gi|223713578|gb|ACDM01000020.1| GENE    54     52458  -     52724    207     88 aa, chain - ## HITS:1  COG:no KEGG:B21_01149 NR:ns ## KEGG: B21_01149 # Name: ymgB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      88       1      88      88     135  100.0  4e-31
MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMLSGDNVNNKNIILSLIHS
LETTSDILKADVIRKTLEIVLRYTADDM
>gi|223713578|gb|ACDM01000020.1| GENE    55     53068  -     53304    215     78 aa, chain - ## HITS:1  COG:no KEGG:B21_01147 NR:ns ## KEGG: B21_01147 # Name: ycgZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      78       1      78      78     140  100.0  2e-32
MHQNSVTLDSAGAITRYFAKANLHTQQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEHA
TGEEEQKHYNALIGLLFE
>gi|223713578|gb|ACDM01000020.1| GENE    56     53711  -     54829    524    372 aa, chain + ## HITS:1  COG:ycgF_2 KEGG:ns NR:ns ## COG: ycgF_2 COG2200 # Protein_GI_number: 16129126 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 130     372       1     243     243     480  100.0  1e-135
MQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAG
MELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWL
FIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKD
GEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQ
IIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQEL
ITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKL
NGIPSIAWPEKK
>gi|223713578|gb|ACDM01000020.1| GENE    57     55034  -     55765    370    243 aa, chain + ## HITS:1  COG:ycgE KEGG:ns NR:ns ## COG: ycgE COG0789 # Protein_GI_number: 16129125 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     243       1     243     243     475  100.0  1e-134
MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDEEDIQRIEEIKRWISNG
VPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRARIISLGREYPVDQLINHV
YLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRKPGKEAILMAWNVEERARLWL
EAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGMAPTRRQNELLQHWGEQGYKVIF
HAP
>gi|223713578|gb|ACDM01000020.1| GENE    58     55986  -     56390    128    134 aa, chain + ## HITS:1  COG:ycgX KEGG:ns NR:ns ## COG: ycgX COG5562 # Protein_GI_number: 16129124 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1     134       1     134     134     265  100.0  1e-71
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTR
NLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNT
LLYIEDVENNKPLI
>gi|223713578|gb|ACDM01000020.1| GENE    59     57518  -     58768   1647    416 aa, chain - ## HITS:1  COG:icd KEGG:ns NR:ns ## COG: icd COG0538 # Protein_GI_number: 16129099 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Escherichia coli K12 # 1     416       1     416     416     840   99.0  0
MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGE
RKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQ
ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR
EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA
FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA
CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA
EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMEGAKLLKCSEFGEAIIENM
>gi|223713578|gb|ACDM01000020.1| GENE    60     58970  -     59593    497    207 aa, chain + ## HITS:1  COG:ymfC KEGG:ns NR:ns ## COG: ymfC COG1187 # Protein_GI_number: 16129098 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1     207       1     207     207     400  100.0  1e-112
MQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ
GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT
LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP
TLRLIRYAMGDYSLDNLANGEWREVTD
>gi|223713578|gb|ACDM01000020.1| GENE    61     59603  -     60064    431    153 aa, chain + ## HITS:1  COG:ECs1606 KEGG:ns NR:ns ## COG: ECs1606 COG0494 # Protein_GI_number: 15830860 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     153       1     153     153     314  100.0  3e-86
MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISA
QPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRS
PLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI
>gi|223713578|gb|ACDM01000020.1| GENE    62     60118  -     61224   1286    368 aa, chain + ## HITS:1  COG:trmU KEGG:ns NR:ns ## COG: trmU COG0482 # Protein_GI_number: 16129096 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Escherichia coli K12 # 1     368      16     383     383     748  100.0  0
MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQA
VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG
ADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRK
IAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTL
GQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPF
TGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGII
EQRLPLPV
>gi|223713578|gb|ACDM01000020.1| GENE    63     61260  -     61901    760    213 aa, chain + ## HITS:1  COG:ycfC KEGG:ns NR:ns ## COG: ycfC COG2915 # Protein_GI_number: 16129095 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in purine metabolism # Organism: Escherichia coli K12 # 1     213       1     213     213     380  100.0  1e-105
MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEA
NLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQL
EHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVL
WHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL
>gi|223713578|gb|ACDM01000020.1| GENE    64     61905  -     63275   1612    456 aa, chain + ## HITS:1  COG:purB KEGG:ns NR:ns ## COG: purB COG0015 # Protein_GI_number: 16129094 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Escherichia coli K12 # 1     456       1     456     456     931  100.0  0
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFA
ADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFA
CTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTI
GKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ
WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPH
KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQST
LKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMK
QFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK
>gi|223713578|gb|ACDM01000020.1| GENE    65     63444  -     64115    885    223 aa, chain + ## HITS:1  COG:phoP KEGG:ns NR:ns ## COG: phoP COG0745 # Protein_GI_number: 16129093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     223       1     223     223     417  100.0  1e-117
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL
SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS
GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP
DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
>gi|223713578|gb|ACDM01000020.1| GENE    66     64115  -     65575   1196    486 aa, chain + ## HITS:1  COG:phoQ KEGG:ns NR:ns ## COG: phoQ COG0642 # Protein_GI_number: 16129092 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     486       1     486     486     956  100.0  0
MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFY
TLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFH
EIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDT
IPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLN
PATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSV
SDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGV
NISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGI
PLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH
SAPKDE
>gi|223713578|gb|ACDM01000020.1| GENE    67     65651  -     66772   1231    373 aa, chain + ## HITS:1  COG:ycfD KEGG:ns NR:ns ## COG: ycfD COG2850 # Protein_GI_number: 16129091 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     373       4     376     376     749  100.0  0
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGK
WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG
GVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILY
IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPA
DVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQG
EVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAML
AALVNSGYWFFEG
>gi|223713578|gb|ACDM01000020.1| GENE    68     66821  -     68047   1485    408 aa, chain - ## HITS:1  COG:pepT KEGG:ns NR:ns ## COG: pepT COG2195 # Protein_GI_number: 16129090 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli K12 # 1     408       1     408     408     835  100.0  0
MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMA
TLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVL
HQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAK
HFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAAR
IHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKK
VGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQ
LSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
>gi|223713578|gb|ACDM01000020.1| GENE    69     68315  -     69433   1202    372 aa, chain + ## HITS:1  COG:ECs1571 KEGG:ns NR:ns ## COG: ECs1571 COG3842 # Protein_GI_number: 15830825 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1     372       7     378     378     733   99.0  0
MNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL
ETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP
RVMEALRMVQLETFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQM
QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVAG
FIGEINMFNATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEIND
DNHAEGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAINWVE
SWEVVLADEEHK
>gi|223713578|gb|ACDM01000020.1| GENE    70     69417  -     70274   1028    285 aa, chain + ## HITS:1  COG:ECs1570 KEGG:ns NR:ns ## COG: ECs1570 COG1176 # Protein_GI_number: 15830824 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli O157:H7 # 1     281       1     281     287     467   99.0  1e-131
MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPL
YFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGL
KIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPL
LEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI
KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE
>gi|223713578|gb|ACDM01000020.1| GENE    71     70271  -     71065    899    264 aa, chain + ## HITS:1  COG:ECs1500 KEGG:ns NR:ns ## COG: ECs1500 COG1177 # Protein_GI_number: 15830754 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli O157:H7 # 1     264       1     264     264     431  100.0  1e-121
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYSLLMNNDSLLQAA
QHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFM
LLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPL
AMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVL
SLVMVIASQLIARDKTKGNTGDVK
>gi|223713578|gb|ACDM01000020.1| GENE    72     71062  -     72108   1494    348 aa, chain + ## HITS:1  COG:potD KEGG:ns NR:ns ## COG: potD COG0687 # Protein_GI_number: 16129086 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1     348       1     348     348     652  100.0  0
MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYE
SNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFD
PNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKL
GYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAG
TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAA
RKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKAGR
>gi|223713578|gb|ACDM01000020.1| GENE    73     72166  -     72627    307    153 aa, chain + ## HITS:1  COG:no KEGG:JW5164 NR:ns ## KEGG: JW5164 # Name: ymfA # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     140       1     140     153     276   99.0  2e-73
MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD
GSWYPVIAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP
>gi|223713578|gb|ACDM01000020.1| GENE    74     72624  -     73412    310    262 aa, chain + ## HITS:1  COG:no KEGG:JW1107 NR:ns ## KEGG: JW1107 # Name: ycfZ # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     262       1     262     262     484  100.0  1e-135
MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEIAHKAELFRQQTGIAPF
IVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTREPRLIMITNGQVESGLDD
KHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQSTPPLTYYPHPGQQHENAPPGS
TNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTIANMGYQALCLYIDNSFAITRIS
PLWAGLIGVCTFIAALLLTSKR
>gi|223713578|gb|ACDM01000020.1| GENE    75     73532  -     74371    742    279 aa, chain - ## HITS:1  COG:ycfY KEGG:ns NR:ns ## COG: ycfY COG0846 # Protein_GI_number: 16129083 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Escherichia coli K12 # 1     279       1     279     279     555  100.0  1e-158
MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAGISAESGIRTF
RAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDAL
GDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFP
APLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELN
LEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA
>gi|223713578|gb|ACDM01000020.1| GENE    76     74387  -     75298    842    303 aa, chain - ## HITS:1  COG:ycfX KEGG:ns NR:ns ## COG: ycfX COG1940 # Protein_GI_number: 16129082 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1     303       1     303     303     625  100.0  1e-179
MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEADQRFGCKGSV
GIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFT
QYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRLPVDALTMMGLDFPLRRCGCG
QHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNI
LTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH
LTD
>gi|223713578|gb|ACDM01000020.1| GENE    77     75327  -     76565   1303    412 aa, chain - ## HITS:1  COG:lolE KEGG:ns NR:ns ## COG: lolE COG4591 # Protein_GI_number: 16129081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Escherichia coli K12 # 1     412       3     414     414     759  100.0  0
MPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAV
VPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQ
EQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQP
KRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAG
EVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDI
AVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLS
SDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ
>gi|223713578|gb|ACDM01000020.1| GENE    78     76571  -     77272    226    233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6     216       9     210     309 91  29 1e-17
MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT
PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA
EINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN
ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE
>gi|223713578|gb|ACDM01000020.1| GENE    79     77265  -     78464   1312    399 aa, chain - ## HITS:1  COG:ECs1494 KEGG:ns NR:ns ## COG: ECs1494 COG4591 # Protein_GI_number: 15830748 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Escherichia coli O157:H7 # 1     399       1     399     399     703   99.0  0
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNIL
GLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPA
QKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPS
QRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
PEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAIL
QTQGLTPRQIMMVFMVQGASAGIIGAILGVALGALLASQLNNLMPIIGVLLDGAALPVAI
EPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
>gi|223713578|gb|ACDM01000020.1| GENE    80     78726  -     79799   1082    357 aa, chain + ## HITS:1  COG:ycfT KEGG:ns NR:ns ## COG: ycfT COG4763 # Protein_GI_number: 16129078 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     357       1     357     357     630  100.0  0
MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMP
VFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSN
ASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNF
VPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTIS
LLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMN
AARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR
>gi|223713578|gb|ACDM01000020.1| GENE    81     79927  -     83373   3852   1148 aa, chain + ## HITS:1  COG:mfd KEGG:ns NR:ns ## COG: mfd COG1197 # Protein_GI_number: 16129077 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Escherichia coli K12 # 1    1148       1    1148    1148    2282  100.0  0
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR
ELEENAIA
>gi|223713578|gb|ACDM01000020.1| GENE    82     83520  -     84479    865    319 aa, chain + ## HITS:1  COG:ECs1491 KEGG:ns NR:ns ## COG: ECs1491 COG1376 # Protein_GI_number: 15830745 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     319       2     320     320     598  100.0  1e-171
MIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAK
KYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKN
SVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPD
NPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNII
NTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMD
VRSGMPVDVRRHQVSPQTL
>gi|223713578|gb|ACDM01000020.1| GENE    83     84561  -     84818    276     85 aa, chain - ## HITS:1  COG:no KEGG:ECO103_1157 NR:ns ## KEGG: ECO103_1157 # Name: ycfR # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      85       1      85      85     127  100.0  9e-29
MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADE
MGAKSFRITSVTGPNTLHGTAVIYK
>gi|223713578|gb|ACDM01000020.1| GENE    84     85059  -     85691    469    210 aa, chain + ## HITS:1  COG:ycfQ KEGG:ns NR:ns ## COG: ycfQ COG1309 # Protein_GI_number: 16129074 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     210      27     236     236     430  100.0  1e-120
MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEF
TNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMI
NNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCIIQG
MSISAREGASLEKLMQIAGTTLRLWPELVK
>gi|223713578|gb|ACDM01000020.1| GENE    85     85753  -     86292    571    179 aa, chain - ## HITS:1  COG:ycfJ KEGG:ns NR:ns ## COG: ycfJ COG3134 # Protein_GI_number: 16129073 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Escherichia coli K12 # 1     179       1     179     179     300  100.0  1e-81
MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIKETVKTPRQECRNVTVT
HRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQESD
TYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRDPGTQIPLDSNGQLILNNKV
>gi|223713578|gb|ACDM01000020.1| GENE    86     86502  -     87806   1372    434 aa, chain - ## HITS:1  COG:ndh KEGG:ns NR:ns ## COG: ndh COG1252 # Protein_GI_number: 16129072 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Escherichia coli K12 # 1     434       1     434     434     863  100.0  0
MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLD
EGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVM
ALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGA
TGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLG
VRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEP
TLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKNYQYK
DHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLV
GSINRVIRPRLKLH
>gi|223713578|gb|ACDM01000020.1| GENE    87     88206  -     88748    562    180 aa, chain - ## HITS:1  COG:ECs1486 KEGG:ns NR:ns ## COG: ECs1486 COG3150 # Protein_GI_number: 15830740 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1     180      20     199     199     375  100.0  1e-104
MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDE
RPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFR
EKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
>gi|223713578|gb|ACDM01000020.1| GENE    88     88771  -     89796   1034    341 aa, chain - ## HITS:1  COG:ycfO KEGG:ns NR:ns ## COG: ycfO COG1472 # Protein_GI_number: 16129070 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Escherichia coli K12 # 1     341       1     341     341     679  100.0  0
MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRELVRQIRAASRNRLVVA
VDQEGGRVQRFREGFTRLPAAQSFAALSGMEEGGKLAQEAGWLMASEMIAMDIDISFAPV
LDVGHISAAIGERSYHADPQKALAIASRFIDGMHEAGMKTTGKHFPGHGAVTADSHKETP
CDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSDVDPRPASGSPYWLKTVLRQELG
FDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPIKAERV
TRLYHKGSFSRQELMDSARWKAISTRLNQLHERWQEEKAGH
>gi|223713578|gb|ACDM01000020.1| GENE    89     89807  -     90631    287    274 aa, chain - ## HITS:1  COG:ycfN KEGG:ns NR:ns ## COG: ycfN COG0510 # Protein_GI_number: 16129069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Escherichia coli K12 # 1     274       1     274     274     528  100.0  1e-150
MPFRSNNPITRDELLSRFFPQYHPVTTFNSGLSGGSFLIEHQGQRFVVRQPHDPDAPQSA
FLRQYRALSQLPACIAPKPHLYLRDWMVVDYLPGAVKTYLPDTNELAGLLYYLHQQPRFG
WRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRPLRLSPLHMDVHAGNLVHSAS
GLKLIDWEYAGDGDIALELAAVWVENTEQHRQLVNDYATRAKIYPAQLWRQVRRWFPWLL
MLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ
>gi|223713578|gb|ACDM01000020.1| GENE    90     90612  -     91253    585    213 aa, chain - ## HITS:1  COG:ECs1483 KEGG:ns NR:ns ## COG: ECs1483 COG3417 # Protein_GI_number: 15830737 # Func_class: R General function prediction only # Function: Collagen-binding surface adhesin SpaP (antigen I/II family) # Organism: Escherichia coli O157:H7 # 1     213       1     213     213     367  100.0  1e-102
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG
PIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
>gi|223713578|gb|ACDM01000020.1| GENE    91     91267  -     91644    197    125 aa, chain - ## HITS:1  COG:ycfL KEGG:ns NR:ns ## COG: ycfL COG5633 # Protein_GI_number: 16129067 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli K12 # 1     125       1     125     125     227  100.0  4e-60
MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPFLSTSDIQPSA
SSTLYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKVR
LYLYL
>gi|223713578|gb|ACDM01000020.1| GENE    92     91647  -     92006    470    119 aa, chain - ## HITS:1  COG:ECs1481 KEGG:ns NR:ns ## COG: ECs1481 COG0537 # Protein_GI_number: 15830735 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Escherichia coli O157:H7 # 1     119       1     119     119     205  100.0  2e-53
MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQ
ALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKGL
>gi|223713578|gb|ACDM01000020.1| GENE    93     92340  -     93099    663    253 aa, chain + ## HITS:1  COG:ECs1480 KEGG:ns NR:ns ## COG: ECs1480 COG4773 # Protein_GI_number: 15830734 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid # Organism: Escherichia coli O157:H7 # 1     253       1     253     729     490  100.0  1e-138
MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETVIVEGSATAPDDGENDY
SVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALY
YSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEVVRGATGLMTGTGNPSAAINM
VRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDGKIRARIVGGYQNNDSWLDRYNS
EKTFFSGIVDADL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:48:56 2011
 Seq name: gi|223713577|gb|ACDM01000021.1| Escherichia sp. 4_1_40B cont1.21, whole genome shotgun sequence 
 Length of sequence - 63218 bp
 Number of predicted genes - 70, with homology - 68
 Number of transcription units - 33, operones - 16 average op.length -  3.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        178 -      1434    189  ## PROTEIN SUPPORTED gi|145633184|ref|ZP_01788915.1| putative hydroxamate-type ferrisiderophore receptor
                               +    Term      1452 -      1481    2.8 
                               -    Term      1439 -      1469    3.0 
     2     2 Tu  1     .       -    CDS       1494 -      2927   1707  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               -    Prom      3022 -      3081    5.6 
     3     3 Op  1  10/0.000   -    CDS       3222 -      4019    834  ## COG0084 Mg-dependent DNase
     4     3 Op  2  22/0.000   -    CDS       4030 -      5034    730  ## COG0470 ATPase involved in DNA replication
     5     3 Op  3  10/0.000   -    CDS       5031 -      5672    744  ## COG0125 Thymidylate kinase
     6     3 Op  4   6/0.300   -    CDS       5662 -      6684   1112  ## COG1559 Predicted periplasmic solute-binding protein
     7     3 Op  5   5/0.400   -    CDS       6687 -      7496    508  ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
                               -    Prom      7516 -      7575    2.9 
                               -    Term      7563 -      7590   -0.1 
     8     4 Op  1  27/0.000   -    CDS       7616 -      8857   1246  ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase
                               -    Prom      8878 -      8937    1.9 
                               -    Term      8896 -      8936    9.2 
     9     4 Op  2  22/0.000   -    CDS       8945 -      9181    417  ## COG0236 Acyl carrier protein
                               -    Prom      9220 -      9279    4.9 
                               -    Term      9337 -      9363   -0.6 
    10     4 Op  3  26/0.000   -    CDS       9392 -     10126    252  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
    11     4 Op  4  14/0.000   -    CDS      10139 -     11068   1025  ## COG0331 (acyl-carrier-protein) S-malonyltransferase
    12     4 Op  5  16/0.000   -    CDS      11084 -     12037    917  ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III
    13     4 Op  6  14/0.000   -    CDS      12105 -     13145    577  ## COG0416 Fatty acid/phospholipid biosynthesis enzyme
    14     4 Op  7  20/0.000   -    CDS      13256 -     13429    292  ## PROTEIN SUPPORTED gi|15801206|ref|NP_287223.1| 50S ribosomal protein L32
    15     4 Op  8     .       -    CDS      13481 -     14002    468  ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein
                               -    Prom     14147 -     14206    5.4 
                               +    Prom     13977 -     14036    3.1 
    16     5 Tu  1     .       +    CDS      14162 -     14785    458  ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
    17     6 Tu  1     .       -    CDS      14897 -     15856    190  ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit
                               -    Prom     15957 -     16016    3.6 
    18     7 Tu  1     .       +    CDS      16429 -     19614   3141  ## COG1530 Ribonucleases G and E
                               +    Term     19636 -     19667    3.2 
                               -    Term     19728 -     19768    7.1 
    19     8 Op  1  21/0.000   -    CDS      19810 -     20763   1032  ## COG1344 Flagellin and related hook-associated proteins
    20     8 Op  2   9/0.000   -    CDS      20775 -     22418   1524  ## COG1256 Flagellar hook-associated protein
    21     8 Op  3   7/0.300   -    CDS      22484 -     23425    978  ## COG3951 Rod binding protein
    22     8 Op  4   9/0.000   -    CDS      23425 -     24522    938  ## COG1706 Flagellar basal-body P-ring protein
    23     8 Op  5   9/0.000   -    CDS      24534 -     25232    793  ## COG2063 Flagellar basal body L-ring protein
                               -    Term     25241 -     25280    2.5 
    24     8 Op  6   8/0.100   -    CDS      25285 -     26067    987  ## COG4786 Flagellar basal body rod protein
                               -    Prom     26115 -     26174    1.7 
    25     9 Op  1   8/0.100   -    CDS      26239 -     26994    645  ## COG4787 Flagellar basal body rod protein
    26     9 Op  2  16/0.000   -    CDS      27014 -     28222   1319  ## COG1749 Flagellar hook protein FlgE
    27     9 Op  3   9/0.000   -    CDS      28247 -     28942    787  ## COG1843 Flagellar hook capping protein
    28     9 Op  4  24/0.000   -    CDS      28954 -     29358    314  ## COG1558 Flagellar basal body rod protein
    29     9 Op  5     .       -    CDS      29362 -     29778    481  ## COG1815 Flagellar basal body protein
                               -    Prom     29932 -     29991    2.3 
                               +    Prom     29851 -     29910    3.9 
    30    10 Op  1   8/0.100   +    CDS      29954 -     30592    281  ## COG1261 Flagellar basal body P-ring biosynthesis protein
    31    10 Op  2   7/0.300   +    CDS      30668 -     30961    345  ## COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor)
    32    10 Op  3     .       +    CDS      30966 -     31382    418  ## COG3418 Flagellar biosynthesis/type III secretory pathway chaperone
                               +    Term     31387 -     31430   10.2 
                               -    Term     31374 -     31414    2.7 
    33    11 Tu  1   5/0.400   -    CDS      31422 -     32957   1012  ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20
                               -    Term     32976 -     33004    3.0 
    34    12 Op  1   4/0.900   -    CDS      33067 -     33990    714  ## COG0673 Predicted dehydrogenases and related proteins
    35    12 Op  2   5/0.400   -    CDS      33992 -     34639    803  ## COG3132 Uncharacterized protein conserved in bacteria
    36    12 Op  3     .       -    CDS      34650 -     35234   1067  ## PROTEIN SUPPORTED gi|15801183|ref|NP_287200.1| ribosomal-protein-S5-alanine N-acetyltransferase
                               -    Prom     35330 -     35389    5.5 
                               +    Prom     35382 -     35441    2.1 
    37    13 Op  1   1/1.000   +    CDS      35470 -     36678   1190  ## COG0477 Permeases of the major facilitator superfamily
    38    13 Op  2     .       +    CDS      36742 -     37389    685  ## COG2999 Glutaredoxin 2
                               +    Term     37402 -     37441    8.0 
    39    14 Tu  1     .       +    CDS      37523 -     38083    650  ## APECO1_145 hypothetical protein
                               +    Term     38088 -     38119    3.2 
                               +    Prom     38093 -     38152    2.1 
    40    15 Op  1     .       +    CDS      38315 -     39235    727  ## COG0418 Dihydroorotase
    41    15 Op  2     .       +    CDS      39309 -     39554    234  ## UTI89_C1186 DNA damage-inducible protein I
                               +    Term     39574 -     39601    1.5 
                               +    Prom     39591 -     39650    6.8 
    42    16 Tu  1     .       +    CDS      39842 -     40096    198  ## APECO1_142 biofilm formation regulatory protein BssS
                               +    Term     40121 -     40149    0.6 
                               +    Prom     40129 -     40188    2.2 
    43    17 Op  1     .       +    CDS      40211 -     41329    820  ## COG0665 Glycine/D-amino acid oxidases (deaminating)
                               +    Term     41339 -     41370    2.4 
    44    17 Op  2     .       +    CDS      41377 -     41490    128  ## 
                               +    Term     41531 -     41571   -0.5 
                               +    Prom     41633 -     41692    8.1 
    45    18 Op  1  12/0.000   +    CDS      41751 -     42317    299  ## COG3038 Cytochrome B561
    46    18 Op  2     .       +    CDS      42321 -     42896    597  ## COG2353 Uncharacterized conserved protein
                               +    Term     42900 -     42952    8.2 
                               -    Term     42893 -     42931    6.9 
    47    19 Tu  1     .       -    CDS      42938 -     43990    895  ## COG1054 Predicted sulfurtransferase
                               -    Prom     44061 -     44120    5.9 
                               +    Prom     44030 -     44089    4.8 
    48    20 Tu  1     .       +    CDS      44215 -     45135    918  ## COG1560 Lauroyl/myristoyl acyltransferase
                               +    Term     45218 -     45257    0.3 
                               +    Prom     45194 -     45253    2.5 
    49    21 Op  1     .       +    CDS      45307 -     46533    782  ## COG0477 Permeases of the major facilitator superfamily
    50    21 Op  2     .       +    CDS      46616 -     46990    495  ## G2583_1310 acidic protein MsyB
                               +    Term     47232 -     47286    4.2 
    51    22 Tu  1     .       -    CDS      46991 -     47218    285  ## COG5645 Predicted periplasmic lipoprotein
                               -    Prom     47239 -     47298    3.2 
                               -    Term     47228 -     47260    3.1 
    52    23 Op  1   7/0.300   -    CDS      47391 -     49904   2374  ## COG2943 Membrane glycosyltransferase
    53    23 Op  2     .       -    CDS      49927 -     51480   1604  ## COG3131 Periplasmic glucans biosynthesis protein
                               -    Prom     51520 -     51579    4.5 
                               +    Prom     51681 -     51740    1.8 
    54    24 Tu  1     .       +    CDS      51856 -     53013    745  ## B21_01051 hypothetical protein
                               +    Term     53068 -     53104    4.0 
    55    25 Op  1   2/0.900   -    CDS      53021 -     54442    718  ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes
    56    25 Op  2     .       -    CDS      54444 -     54977    342  ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
                               -    Prom     55000 -     55059    1.5 
    57    26 Tu  1     .       -    CDS      55072 -     55383    265  ## JW1031 hypothetical protein
    58    27 Tu  1     .       -    CDS      55504 -     55836    186  ## ECUMN_1217 putative autoagglutination protein
                               -    Term     55844 -     55872    1.0 
    59    28 Op  1     .       -    CDS      55895 -     56350    415  ## B21_01046 hypothetical protein
    60    28 Op  2     .       -    CDS      56391 -     56873    292  ## ECH74115_1421 curlin minor subunit
                               -    Prom     57063 -     57122    4.0 
    61    29 Tu  1     .       -    CDS      57487 -     57633     67  ## UTI89_C1162 hypothetical protein
                               -    Prom     57808 -     57867    3.6 
    62    30 Op  1     .       +    CDS      57601 -     58251    274  ## COG2771 DNA-binding HTH domain-containing proteins
    63    30 Op  2     .       +    CDS      58256 -     58645    171  ## APECO1_124 curli assembly protein CsgE
    64    30 Op  3     .       +    CDS      58670 -     59086    360  ## ECDH10B_1110 curli assembly protein CsgF
    65    30 Op  4     .       +    CDS      59113 -     59946    716  ## COG1462 Uncharacterized protein involved in formation of curli polymers
                               +    Term     59958 -     59988    0.2 
                               -    Term     59946 -     59976    0.2 
    66    31 Tu  1     .       -    CDS      60010 -     60531    529  ## SSON_1045 hypothetical protein
    67    32 Tu  1     .       +    CDS      60500 -     60586     56  ## 
    68    33 Op  1   5/0.400   -    CDS      60603 -     61157    717  ## COG3381 Uncharacterized component of anaerobic dehydrogenases
    69    33 Op  2   3/0.900   -    CDS      61181 -     61918    754  ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family
    70    33 Op  3     .       -    CDS      61973 -     62911    571  ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
                               -    Prom     62971 -     63030    5.6 
Predicted protein(s)
>gi|223713577|gb|ACDM01000021.1| GENE     1       178  -      1434    189    418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145633184|ref|ZP_01788915.1| putative hydroxamate-type ferrisiderophore receptor [Haemophilus influenzae 3655] # 186     401     494     713     737 77  27 2e-13
MTLKQQFADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTG
WNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFN
GNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNH
TTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLT
TTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGAT
RYIAEDNEGNAVNPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRA
EQGSYALVDLFTRYQVTKNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF
>gi|223713577|gb|ACDM01000021.1| GENE     2      1494  -      2927   1707    477 aa, chain - ## HITS:1  COG:ptsG_1 KEGG:ns NR:ns ## COG: ptsG_1 COG1263 # Protein_GI_number: 16129064 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1     397       1     397     397     739  100.0  0
MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMP
LIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLG
GIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQ
TFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY
MAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPI
EFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIV
GIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDA
CITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH
>gi|223713577|gb|ACDM01000021.1| GENE     3      3222  -      4019    834    265 aa, chain - ## HITS:1  COG:ECs1478 KEGG:ns NR:ns ## COG: ECs1478 COG0084 # Protein_GI_number: 15830732 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli O157:H7 # 1     265       1     265     265     528  100.0  1e-150
MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERDNV
VFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIG
RELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIV
TFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVE
ELAQVTTDNFARLFHIDASRLQSIR
>gi|223713577|gb|ACDM01000021.1| GENE     4      4030  -      5034    730    334 aa, chain - ## HITS:1  COG:ECs1477 KEGG:ns NR:ns ## COG: ECs1477 COG0470 # Protein_GI_number: 15830731 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Escherichia coli O157:H7 # 1     334       1     334     334     608   99.0  1e-174
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
>gi|223713577|gb|ACDM01000021.1| GENE     5      5031  -      5672    744    213 aa, chain - ## HITS:1  COG:tmk KEGG:ns NR:ns ## COG: tmk COG0125 # Protein_GI_number: 16129061 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Escherichia coli K12 # 1     213       1     213     213     399  100.0  1e-111
MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLVLDIKSV
GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHML
ATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQ
DKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA
>gi|223713577|gb|ACDM01000021.1| GENE     6      5662  -      6684   1112    340 aa, chain - ## HITS:1  COG:yceG KEGG:ns NR:ns ## COG: yceG COG1559 # Protein_GI_number: 16129060 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Escherichia coli K12 # 1     340       1     340     340     653  100.0  0
MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYAD
KIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRL
SDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKR
AHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGM
RLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAK
TPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
>gi|223713577|gb|ACDM01000021.1| GENE     7      6687  -      7496    508    269 aa, chain - ## HITS:1  COG:pabC KEGG:ns NR:ns ## COG: pabC COG0115 # Protein_GI_number: 16129059 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Escherichia coli K12 # 1     269       1     269     269     551  100.0  1e-157
MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFW
PQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEG
ITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLF
WRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMP
VMPVCACGDVSFSSATLYEYLAPLCERPN
>gi|223713577|gb|ACDM01000021.1| GENE     8      7616  -      8857   1246    413 aa, chain - ## HITS:1  COG:ECs1473 KEGG:ns NR:ns ## COG: ECs1473 COG0304 # Protein_GI_number: 15830727 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli O157:H7 # 1     413       1     413     413     729  100.0  0
MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE
DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHT
SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY
GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV
LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGY
VNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRD
QAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKKI
>gi|223713577|gb|ACDM01000021.1| GENE     9      8945  -      9181    417     78 aa, chain - ## HITS:1  COG:ECs1472 KEGG:ns NR:ns ## COG: ECs1472 COG0236 # Protein_GI_number: 15830726 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Escherichia coli O157:H7 # 1      78       1      78      78     108  100.0  2e-24
MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA
EKITTVQAAIDYINGHQA
>gi|223713577|gb|ACDM01000021.1| GENE    10      9392  -     10126    252    244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6     243       4     242     242 101  29 9e-21
MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNV
TDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKA
VMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVA
PGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG
MYMV
>gi|223713577|gb|ACDM01000021.1| GENE    11     10139  -     11068   1025    309 aa, chain - ## HITS:1  COG:fabD KEGG:ns NR:ns ## COG: fabD COG0331 # Protein_GI_number: 16129055 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Escherichia coli K12 # 1     309       1     309     309     532  100.0  1e-151
MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTW
QTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF
MQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAG
AACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNG
DAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEP
SAMAAALEL
>gi|223713577|gb|ACDM01000021.1| GENE    12     11084  -     12037    917    317 aa, chain - ## HITS:1  COG:ECs1469 KEGG:ns NR:ns ## COG: ECs1469 COG0332 # Protein_GI_number: 15830723 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Escherichia coli O157:H7 # 1     317       1     317     317     612  100.0  1e-175
MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAAT
RAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALS
VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASEEPGIISTHLH
ADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW
LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL
LEAFGGGFTWGSALVRF
>gi|223713577|gb|ACDM01000021.1| GENE    13     12105  -     13145    577    346 aa, chain - ## HITS:1  COG:ZplsX KEGG:ns NR:ns ## COG: ZplsX COG0416 # Protein_GI_number: 15801207 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Escherichia coli O157:H7 EDL933 # 1     346       1     346     346     633   99.0  0
MGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDAITPLLAKADFEQRSRLQIIPAQSVIA
SDARPSQAIRASRGSSMRVALELVKEGRAQACVSAGNTGALMGLAKLLLKPLEGIERPAL
VTVLPHQQKGKTVVLDLGANVDCDSTMLVQFAIMGSVLAEEVVEIPNPRVALLNIGEEEV
KGLDSIRDASAVLKTIPSINYIGYLEANELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFL
SLLKSQGEGKKRSWWLLLLKRWLQKSLTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQ
RAFAVAIEQAVQAVQRQVPQRIAARLESVYPAGFELLDGGKSGTLR
>gi|223713577|gb|ACDM01000021.1| GENE    14     13256  -     13429    292     57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15801206|ref|NP_287223.1| 50S ribosomal protein L32 [Escherichia coli O157:H7 EDL933] # 1      57       1      57      57 117  100 2e-25
MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK
>gi|223713577|gb|ACDM01000021.1| GENE    15     13481  -     14002    468    173 aa, chain - ## HITS:1  COG:ECs1466 KEGG:ns NR:ns ## COG: ECs1466 COG1399 # Protein_GI_number: 15830720 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Escherichia coli O157:H7 # 1     173       1     173     173     320  100.0  7e-88
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
>gi|223713577|gb|ACDM01000021.1| GENE    16     14162  -     14785    458    207 aa, chain + ## HITS:1  COG:yceF KEGG:ns NR:ns ## COG: yceF COG0424 # Protein_GI_number: 16129050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli K12 # 1     207       1     207     207     418  100.0  1e-117
MAIINTLYLMEKNMPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQLVLR
LAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTFYTGLA
LFNSANGHLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHCAGSFKSEGFGITLFERLEGR
DPNTLVGLPLIALCQMLRREGKNPLMG
>gi|223713577|gb|ACDM01000021.1| GENE    17     14897  -     15856    190    319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 95     309      83     284     285 77  29 1e-13
MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL
EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS
FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV
RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR
THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI
EAPMDEGLKRCLQKLRNAR
>gi|223713577|gb|ACDM01000021.1| GENE    18     16429  -     19614   3141   1061 aa, chain + ## HITS:1  COG:rne KEGG:ns NR:ns ## COG: rne COG1530 # Protein_GI_number: 16129047 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Escherichia coli K12 # 1    1061       1    1061    1061    1487  100.0  0
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA
KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV
QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV
VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP
EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
>gi|223713577|gb|ACDM01000021.1| GENE    19     19810  -     20763   1032    317 aa, chain - ## HITS:1  COG:flgL KEGG:ns NR:ns ## COG: flgL COG1344 # Protein_GI_number: 16129046 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Escherichia coli K12 # 1     317       1     317     317     514  100.0  1e-146
MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS
QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQ
LLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGHTGDKIF
DSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL
NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS
YKAFTDMQGLSLFQLSK
>gi|223713577|gb|ACDM01000021.1| GENE    20     20775  -     22418   1524    547 aa, chain - ## HITS:1  COG:flgK KEGG:ns NR:ns ## COG: flgK COG1256 # Protein_GI_number: 16129045 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Escherichia coli K12 # 1     547       1     547     547     884  100.0  0
MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV
SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL
VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN
DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST
ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ
LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT
DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI
VNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG
NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF
DALINIR
>gi|223713577|gb|ACDM01000021.1| GENE    21     22484  -     23425    978    313 aa, chain - ## HITS:1  COG:flgJ_1 KEGG:ns NR:ns ## COG: flgJ_1 COG3951 # Protein_GI_number: 16129044 # Func_class: M Cell wall/membrane/envelope biogenesis; N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Rod binding protein # Organism: Escherichia coli K12 # 1     167       1     167     167     291  100.0  1e-78
MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG
LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET
VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL
ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL
EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK
VSKTYSMNIDNLF
>gi|223713577|gb|ACDM01000021.1| GENE    22     23425  -     24522    938    365 aa, chain - ## HITS:1  COG:flgI KEGG:ns NR:ns ## COG: flgI COG1706 # Protein_GI_number: 16129043 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Escherichia coli K12 # 1     365       1     365     365     556  100.0  1e-158
MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQ
TLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGT
LLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFG
VGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDARTIQVRVPSGNSSQVRFLADIQ
NMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPDTPFGGG
QTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLRA
KLEII
>gi|223713577|gb|ACDM01000021.1| GENE    23     24534  -     25232    793    232 aa, chain - ## HITS:1  COG:ECs1457 KEGG:ns NR:ns ## COG: ECs1457 COG2063 # Protein_GI_number: 15830711 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Escherichia coli O157:H7 # 1     232       1     232     232     412  100.0  1e-115
MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY
GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA
RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF
SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM
>gi|223713577|gb|ACDM01000021.1| GENE    24     25285  -     26067    987    260 aa, chain - ## HITS:1  COG:ECs1456 KEGG:ns NR:ns ## COG: ECs1456 COG4786 # Protein_GI_number: 15830710 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli O157:H7 # 1     260       1     260     260     434  100.0  1e-122
MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT
TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF
QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN
DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY
EINSKAVSTTDQMLQKLTQL
>gi|223713577|gb|ACDM01000021.1| GENE    25     26239  -     26994    645    251 aa, chain - ## HITS:1  COG:flgF KEGG:ns NR:ns ## COG: flgF COG4787 # Protein_GI_number: 16129040 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli K12 # 1     251       1     251     251     418  100.0  1e-117
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTAS
TPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPV
IGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFR
LSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
AGRANQLLSMS
>gi|223713577|gb|ACDM01000021.1| GENE    26     27014  -     28222   1319    402 aa, chain - ## HITS:1  COG:flgE KEGG:ns NR:ns ## COG: flgE COG1749 # Protein_GI_number: 16129039 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Escherichia coli K12 # 1     402       1     402     402     620  100.0  1e-177
MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQD
FTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYP
ATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNADSYNK
KGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGTLVDGA
MANNIATGAINGAEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVSYQINDDGTVV
GNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGAL
EASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR
>gi|223713577|gb|ACDM01000021.1| GENE    27     28247  -     28942    787    231 aa, chain - ## HITS:1  COG:ECs1453 KEGG:ns NR:ns ## COG: ECs1453 COG1843 # Protein_GI_number: 15830707 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Escherichia coli O157:H7 # 1     231       1     231     231     312   99.0  3e-85
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
VAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
>gi|223713577|gb|ACDM01000021.1| GENE    28     28954  -     29358    314    134 aa, chain - ## HITS:1  COG:ECs1452 KEGG:ns NR:ns ## COG: ECs1452 COG1558 # Protein_GI_number: 15830706 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli O157:H7 # 1     134       1     134     134     223  100.0  8e-59
MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG
GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN
TVKSMMLKTLTLGQ
>gi|223713577|gb|ACDM01000021.1| GENE    29     29362  -     29778    481    138 aa, chain - ## HITS:1  COG:flgB KEGG:ns NR:ns ## COG: flgB COG1815 # Protein_GI_number: 16129036 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Escherichia coli K12 # 1     138       1     138     138     228  100.0  2e-60
MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDIDFASELKKVMQRGRDAT
SVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDMDRERTQFADNSLQYQMSL
SALSGQIKGMMNVLQSGN
>gi|223713577|gb|ACDM01000021.1| GENE    30     29954  -     30592    281    212 aa, chain + ## HITS:1  COG:flgA KEGG:ns NR:ns ## COG: flgA COG1261 # Protein_GI_number: 16129035 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Escherichia coli K12 # 1     212       8     219     219     366   99.0  1e-101
MAIIAILFSPLSTASNLTSQLHNFFSAQLAGVSDEVRVSIRTAPNLLPPCEQPLLSMSNN
SRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAMPIARGGKLEAGNVKLKRGRLDTLPP
RTVLDINQLVDAISLRDLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALN
NAAVAQNARVRMVSGQVVSGVVDADGNILINL
>gi|223713577|gb|ACDM01000021.1| GENE    31     30668  -     30961    345     97 aa, chain + ## HITS:1  COG:flgM KEGG:ns NR:ns ## COG: flgM COG2747 # Protein_GI_number: 16129034 # Func_class: K Transcription; N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Negative regulator of flagellin synthesis (anti-sigma28 factor) # Organism: Escherichia coli K12 # 1      97       1      97      97     123  100.0  8e-29
MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL
ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN
>gi|223713577|gb|ACDM01000021.1| GENE    32     30966  -     31382    418    138 aa, chain + ## HITS:1  COG:flgN KEGG:ns NR:ns ## COG: flgN COG3418 # Protein_GI_number: 16129033 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis/type III secretory pathway chaperone # Organism: Escherichia coli K12 # 1     138       1     138     138     209   99.0  1e-54
MTRLAGILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITEQKSSLLATLDYLEQLR
RKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIERNQQALEMLKPHQEPTLY
GANGQTSTTHRGGKKISI
>gi|223713577|gb|ACDM01000021.1| GENE    33     31422  -     32957   1012    511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 3     502       5     516     524 394  40 1e-109
MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAF
SQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADT
ADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAP
YFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMRVVKQMGPAILGV
SVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNH
DEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALMTQRALIAYSVG
LIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACL
NASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEWSLGTMPWRLLR
LMAVVLAGIAAYFAALAVLGFKVKEFARRTV
>gi|223713577|gb|ACDM01000021.1| GENE    34     33067  -     33990    714    307 aa, chain - ## HITS:1  COG:mviM KEGG:ns NR:ns ## COG: mviM COG0673 # Protein_GI_number: 16129031 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1     307       1     307     307     622  100.0  1e-178
MKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL
AASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG
FNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKA
SLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMRE
WREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKI
WRDAMSE
>gi|223713577|gb|ACDM01000021.1| GENE    35     33992  -     34639    803    215 aa, chain - ## HITS:1  COG:yceH KEGG:ns NR:ns ## COG: yceH COG3132 # Protein_GI_number: 16129030 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     215       1     215     215     397  100.0  1e-111
MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLD
NLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSR
AARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRENRYMHLFSGEVEDQPAVTDM
SNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD
>gi|223713577|gb|ACDM01000021.1| GENE    36     34650  -     35234   1067    194 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15801183|ref|NP_287200.1| ribosomal-protein-S5-alanine N-acetyltransferase [Escherichia coli O157:H7 EDL933] # 1     194       1     194     194 415  100 1e-115
MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQ
ARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSFHACYLGYSIGQKWQGKGL
MFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDH
VLTALTTPDWTPGR
>gi|223713577|gb|ACDM01000021.1| GENE    37     35470  -     36678   1190    402 aa, chain + ## HITS:1  COG:yceL KEGG:ns NR:ns ## COG: yceL COG0477 # Protein_GI_number: 16129028 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     402      11     412     412     701  100.0  0
MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWAAVMVGIALGLRQFIQQ
GLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLLWFSCLLSGLGGTLFDPPR
SALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLCAAF
NAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDVAG
APSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLMAGLLIMSLSMMPVGMVSGLQQL
FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAIGGAIGYIGGGWLFDLG
KSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAARRLLERDA
>gi|223713577|gb|ACDM01000021.1| GENE    38     36742  -     37389    685    215 aa, chain + ## HITS:1  COG:ECs1442 KEGG:ns NR:ns ## COG: ECs1442 COG2999 # Protein_GI_number: 15830696 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin 2 # Organism: Escherichia coli O157:H7 # 1     215       1     215     215     426   99.0  1e-119
MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMP
ESMDIVHYVDKLNGKPLLTGKRSPAIEEWLRKVNGYANKLLLPRFAKSAFDEFSTPAARK
YFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLR
NLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI
>gi|223713577|gb|ACDM01000021.1| GENE    39     37523  -     38083    650    186 aa, chain + ## HITS:1  COG:no KEGG:APECO1_145 NR:ns ## KEGG: APECO1_145 # Name: yceB # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     186      20     205     205     353  100.0  2e-96
MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTN
LTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVD
ATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEI
VIPFTD
>gi|223713577|gb|ACDM01000021.1| GENE    40     38315  -     39235    727    306 aa, chain + ## HITS:1  COG:pyrC KEGG:ns NR:ns ## COG: pyrC COG0418 # Protein_GI_number: 16129025 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase # Organism: Escherichia coli K12 # 1     306      43     348     348     630  100.0  1e-180
MPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAA
KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVM
EPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLYC
LPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYATV
FEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLVPFLAGETV
RWSVKQ
>gi|223713577|gb|ACDM01000021.1| GENE    41     39309  -     39554    234     81 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C1186 NR:ns ## KEGG: UTI89_C1186 # Name: not_defined # Def: DNA damage-inducible protein I # Organism: E.coli_UTI89 # Pathway: not_defined # 1      81      20     100     100     156  100.0  2e-37
MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDK
QRISEILQETWESADDWFVSE
>gi|223713577|gb|ACDM01000021.1| GENE    42     39842  -     40096    198     84 aa, chain + ## HITS:1  COG:no KEGG:APECO1_142 NR:ns ## KEGG: APECO1_142 # Name: bssS, yceP # Def: biofilm formation regulatory protein BssS # Organism: E.coli_APEC # Pathway: not_defined # 1      84       2      85      85     164  100.0  1e-39
MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGTEVGQTLWLTTDVARQF
ISILEAGIAKIESGDFQVNEYRRH
>gi|223713577|gb|ACDM01000021.1| GENE    43     40211  -     41329    820    372 aa, chain + ## HITS:1  COG:solA KEGG:ns NR:ns ## COG: solA COG0665 # Protein_GI_number: 16129022 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1     372       1     372     372     786  100.0  0
MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKY
VPLVLRAQTLWDELSRHNEEDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQ
GIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD
GVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTG
ELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVASDGSEAFPFLRNVLPGIG
CCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSD
FDLTPFRLSRFQ
>gi|223713577|gb|ACDM01000021.1| GENE    44     41377  -     41490    128     37 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF
>gi|223713577|gb|ACDM01000021.1| GENE    45     41751  -     42317    299    188 aa, chain + ## HITS:1  COG:yceJ KEGG:ns NR:ns ## COG: yceJ COG3038 # Protein_GI_number: 16129020 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli K12 # 1     188       1     188     188     346  100.0  2e-95
MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLM
MGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPIS
VFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLG
KSSSDYGV
>gi|223713577|gb|ACDM01000021.1| GENE    46     42321  -     42896    597    191 aa, chain + ## HITS:1  COG:ECs1434 KEGG:ns NR:ns ## COG: ECs1434 COG2353 # Protein_GI_number: 15830688 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     191       1     191     191     360  100.0  1e-99
MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFT
FDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELD
ITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLGPASQEVD
LIISVEGVQQK
>gi|223713577|gb|ACDM01000021.1| GENE    47     42938  -     43990    895    350 aa, chain - ## HITS:1  COG:yceA KEGG:ns NR:ns ## COG: yceA COG1054 # Protein_GI_number: 16129018 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Escherichia coli K12 # 1     350       1     350     350     742  100.0  0
MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYL
AHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVAD
GIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQ
LPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL
PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYK
GCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE
>gi|223713577|gb|ACDM01000021.1| GENE    48     44215  -     45135    918    306 aa, chain + ## HITS:1  COG:ECs1432 KEGG:ns NR:ns ## COG: ECs1432 COG1560 # Protein_GI_number: 15830686 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1     306       1     306     306     618  100.0  1e-177
MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGLGKLALRFMKRRAKIVH
RNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDRRIARWTEVIGMEHIRDVQ
AQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPLIDWLQTWGRLRSNKSMLDRK
DLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQAATTTGTWMLARMSGACLVPFV
PRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKVVEKCIMMAPEQYMWLHRRFKTRPE
GVPSRY
>gi|223713577|gb|ACDM01000021.1| GENE    49     45307  -     46533    782    408 aa, chain + ## HITS:1  COG:yceE KEGG:ns NR:ns ## COG: yceE COG0477 # Protein_GI_number: 16129016 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     408       1     408     408     715  100.0  0
MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVF
SITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL
GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITAS
VLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAP
ILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL
LLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN
VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVSN
>gi|223713577|gb|ACDM01000021.1| GENE    50     46616  -     46990    495    124 aa, chain + ## HITS:1  COG:no KEGG:G2583_1310 NR:ns ## KEGG: G2583_1310 # Name: msyB # Def: acidic protein MsyB # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     124       2     125     125     183  100.0  1e-45
MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQDGDIMWQVEFFADEGEE
GECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEGRAAADE
WDER
>gi|223713577|gb|ACDM01000021.1| GENE    51     46991  -     47218    285     75 aa, chain - ## HITS:1  COG:ECs1428 KEGG:ns NR:ns ## COG: ECs1428 COG5645 # Protein_GI_number: 15830682 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 1      75       1      75      75     147  100.0  3e-36
MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYVTILDLPFSLVF
DTLLLPIDIHHGPYE
>gi|223713577|gb|ACDM01000021.1| GENE    52     47391  -     49904   2374    837 aa, chain - ## HITS:1  COG:ECs1427 KEGG:ns NR:ns ## COG: ECs1427 COG2943 # Protein_GI_number: 15830681 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane glycosyltransferase # Organism: Escherichia coli O157:H7 # 1     837      21     857     857    1678  100.0  0
MPIAASEKAALPKTDIRAVHQALDAEHRTWAREDDSPQGSVKARLEQAWPDSLADGQLIK
DDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRFWDRLRGRDVTPRYLARLTKEEQESEQKW
RTVGTIRRYILLILTLAQTVVATWYMKTILPYQGWALINPMDMVGQDLWVSFMQLLPYML
QTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNPEHRTALIMPI
CNEDVNRVFAGLRATWESVKATGNAKHFDVYILSDSYNPDICVAEQKAWMELIAEVGGEG
QIFYRRRRRRVKRKSGNIDDFCRRWGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAG
IIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHC
ALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRW
CHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFL
QPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLE
VLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWA
VGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVD
TDRFLEMNRQRSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETP
EKLNRDRRLVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ
>gi|223713577|gb|ACDM01000021.1| GENE    53     49927  -     51480   1604    517 aa, chain - ## HITS:1  COG:mdoG KEGG:ns NR:ns ## COG: mdoG COG3131 # Protein_GI_number: 16129011 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Escherichia coli K12 # 7     517       1     511     511    1032  100.0  0
MKHKLQMMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYETPKSNLPSVFRDM
KYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFT
FGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLA
IDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQS
KIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIWRPLNNP
KHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGEWGKGSVELVEIP
TNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHAPDNAWVQQTRRSTGDVKQ
SNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTSIGDNGEIVESTVRYNPVTKGWRLV
MRVKVKDAKKTTEMRAALVNADQTLSETWSYQLPANE
>gi|223713577|gb|ACDM01000021.1| GENE    54     51856  -     53013    745    385 aa, chain + ## HITS:1  COG:no KEGG:B21_01051 NR:ns ## KEGG: B21_01051 # Name: mdoC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     385       1     385     385     704  100.0  0
MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAESSLWLTLFNDFIHSFRM
QVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLPQFIMLQYVKGKAESW
PGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRIRNNLENSDKTNKKFSMVKLS
VIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTLFYLPFFILGALAFIFPHLKALF
TTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETESVITMVLGLWMVNVVFSFGHRLLNF
QSARVTYFVNASLFIYLVHHPLTLFFGAYITPHITSNWLGFLCGLIFVVGIAIILYEIHL
RIPLLKFLFSGKPVVKRENDKAPAR
>gi|223713577|gb|ACDM01000021.1| GENE    55     53021  -     54442    718    473 aa, chain - ## HITS:1  COG:ymdC KEGG:ns NR:ns ## COG: ymdC COG1502 # Protein_GI_number: 16129009 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli K12 # 1     473      21     493     493     948   99.0  0
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL
>gi|223713577|gb|ACDM01000021.1| GENE    56     54444  -     54977    342    177 aa, chain - ## HITS:1  COG:ECs1423 KEGG:ns NR:ns ## COG: ECs1423 COG2110 # Protein_GI_number: 15830677 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Escherichia coli O157:H7 # 1     177       1     177     177     347  100.0  5e-96
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC
PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA
ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
>gi|223713577|gb|ACDM01000021.1| GENE    57     55072  -     55383    265    103 aa, chain - ## HITS:1  COG:no KEGG:JW1031 NR:ns ## KEGG: JW1031 # Name: ymdA # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     103       1     103     103     196  100.0  2e-49
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
>gi|223713577|gb|ACDM01000021.1| GENE    58     55504  -     55836    186    110 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_1217 NR:ns ## KEGG: ECUMN_1217 # Name: csgC # Def: putative autoagglutination protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     110      54     163     163     159   98.0  2e-38
MNTLLLLAALSSQITFNTTQQGDVYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEK
TLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPPSSEKS
>gi|223713577|gb|ACDM01000021.1| GENE    59     55895  -     56350    415    151 aa, chain - ## HITS:1  COG:no KEGG:B21_01046 NR:ns ## KEGG: B21_01046 # Name: csgA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     151       1     151     151     187  100.0  1e-46
MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSELNIYQYGGGNSALALQ
TDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSATLDQWNGKNSEMTVKQFGG
GNGAAVDQTASNSSVNVTQVGFGNNATAHQY
>gi|223713577|gb|ACDM01000021.1| GENE    60     56391  -     56873    292    160 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_1421 NR:ns ## KEGG: ECH74115_1421 # Name: csgB # Def: curlin minor subunit # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     160       1     160     160     223  100.0  1e-57
MYDQVQGDNMKNKLLFMMLTILGAPGIAAAAGYDLANSEYNFAVNELSKSSFNQAAIIGQ
AGTNNSAQLRQGGSKLLAVVAQEGSSNRAKIDQTGDYNLAYIDQAGSANDASISQGAYGN
TAMIIQKGSGNKANITQYGTQKTAIVVQRQSQMAIRVTQR
>gi|223713577|gb|ACDM01000021.1| GENE    61     57487  -     57633     67     48 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C1162 NR:ns ## KEGG: UTI89_C1162 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 3      48       1      46      46      75  100.0  7e-13
MTMNTMDFIKHDETPLFLLIAHLTAASKIEAPEVLTDVALLCVVINQP
>gi|223713577|gb|ACDM01000021.1| GENE    62     57601  -     58251    274    216 aa, chain + ## HITS:1  COG:ECs1417 KEGG:ns NR:ns ## COG: ECs1417 COG2771 # Protein_GI_number: 15830671 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     216       1     216     216     402   99.0  1e-112
MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNG
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
>gi|223713577|gb|ACDM01000021.1| GENE    63     58256  -     58645    171    129 aa, chain + ## HITS:1  COG:no KEGG:APECO1_124 NR:ns ## KEGG: APECO1_124 # Name: csgE # Def: curli assembly protein CsgE # Organism: E.coli_APEC # Pathway: not_defined # 1     129       1     129     129     256  100.0  2e-67
MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESDYTGNLT
INERPSARWGSWITITVNQDVIFQTFLFPLKRDFEKTVVFALIQTEEALNRRQINQALLS
TGDLAHDEF
>gi|223713577|gb|ACDM01000021.1| GENE    64     58670  -     59086    360    138 aa, chain + ## HITS:1  COG:no KEGG:ECDH10B_1110 NR:ns ## KEGG: ECDH10B_1110 # Name: csgF # Def: curli assembly protein CsgF # Organism: E.coli_DH10B # Pathway: not_defined # 1     138       1     138     138     225  100.0  3e-58
MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQAQNSYKDPSYNDDF
GIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNDYIVDIANRDGQLQLNVTDRKT
GQTSTIQVSGLQNNSTDF
>gi|223713577|gb|ACDM01000021.1| GENE    65     59113  -     59946    716    277 aa, chain + ## HITS:1  COG:ECs1414 KEGG:ns NR:ns ## COG: ECs1414 COG1462 # Protein_GI_number: 15830668 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in formation of curli polymers # Organism: Escherichia coli O157:H7 # 1     277       1     277     277     550  100.0  1e-156
MQRLFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDET
GQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQNLLNERKIIRAAQENGTV
AINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFGIGADTQYQLDQIAVNLRVVN
VSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEVGYTSNEPVMLCLMSAIETGVI
FLINDGIDRGLWDLQNKAERQNDILVKYRHMSVPPES
>gi|223713577|gb|ACDM01000021.1| GENE    66     60010  -     60531    529    173 aa, chain - ## HITS:1  COG:no KEGG:SSON_1045 NR:ns ## KEGG: SSON_1045 # Name: ycdZ # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     173       7     179     179     280   99.0  1e-74
MAAFSAIMRGMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGL
AISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIG
ACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA
>gi|223713577|gb|ACDM01000021.1| GENE    67     60500  -     60586     56     28 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MPRMIAENAAMNEIEHTFYATTNYPLQL
>gi|223713577|gb|ACDM01000021.1| GENE    68     60603  -     61157    717    184 aa, chain - ## HITS:1  COG:ycdY KEGG:ns NR:ns ## COG: ycdY COG3381 # Protein_GI_number: 16128998 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli K12 # 1     184       1     184     184     349  100.0  2e-96
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQV
SADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWL
EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE
DSEE
>gi|223713577|gb|ACDM01000021.1| GENE    69     61181  -     61918    754    245 aa, chain - ## HITS:1  COG:ycdX KEGG:ns NR:ns ## COG: ycdX COG1387 # Protein_GI_number: 16128997 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Escherichia coli K12 # 1     245       1     245     245     479  100.0  1e-135
MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWP
RVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIAT
IASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAV
RDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSPRRLLNFLESRGMAPIA
EFADL
>gi|223713577|gb|ACDM01000021.1| GENE    70     61973  -     62911    571    312 aa, chain - ## HITS:1  COG:ycdW KEGG:ns NR:ns ## COG: ycdW COG0111 # Protein_GI_number: 16128996 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1     312      14     325     325     640  100.0  0
MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALVWHPPVEMLAGRDLKAV
FALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYRIQ
QNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAG
REELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAAL
DSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKGE
RVCGQVDRARGY
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:49:38 2011
 Seq name: gi|223713576|gb|ACDM01000022.1| Escherichia sp. 4_1_40B cont1.22, whole genome shotgun sequence 
 Length of sequence - 1458 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS        132 -      1118    359  ## JW1015 predicted inner membrane protein
     2     1 Op  2     .       -    CDS       1115 -      1438    252  ## ECH74115_1296 malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Predicted protein(s)
>gi|223713576|gb|ACDM01000022.1| GENE     1       132  -      1118    359    328 aa, chain - ## HITS:1  COG:no KEGG:JW1015 NR:ns ## KEGG: JW1015 # Name: ycdU # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     328       1     328     328     546  100.0  1e-154
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF
DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSL
YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT
ISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLF
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY
YFFYCRFLWHNDFMMACDMYFRWGHFNK
>gi|223713576|gb|ACDM01000022.1| GENE     2      1115  -      1438    252    107 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_1296 NR:ns ## KEGG: ECH74115_1296 # Name: fabD # Def: malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39) # Organism: E.coli_O157_EC4115 # Pathway: Fatty acid biosynthesis [PATH:ecf00061]; Metabolic pathways [PATH:ecf01100] # 1     107     208     314     314     220   98.0  1e-56
MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTF
LNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:50:40 2011
 Seq name: gi|223713575|gb|ACDM01000023.1| Escherichia sp. 4_1_40B cont1.23, whole genome shotgun sequence 
 Length of sequence - 175284 bp
 Number of predicted genes - 157, with homology - 154
 Number of transcription units - 85, operones - 30 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          8 -       424    220  ## COG2199 FOG: GGDEF domain
                               -    Prom       488 -       547    6.1 
                               +    Prom      1857 -      1916    2.9 
     2     2 Op  1     .       +    CDS       1953 -      4376   1385  ## B21_01033 hypothetical protein
     3     2 Op  2   6/0.125   +    CDS       4385 -      6403   1117  ## COG0726 Predicted xylanase/chitin deacetylase
                               +    Term      6437 -      6474    3.2 
                               +    Prom      6415 -      6474    3.3 
     4     3 Tu  1     .       +    CDS       6516 -      7721    839  ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis
                               +    Term      7753 -      7787    1.2 
                               +    Prom      7755 -      7814    3.6 
     5     4 Tu  1     .       +    CDS       7834 -      8136    152  ## ECB_01023 predicted inner membrane protein
                               +    Term      8201 -      8248    1.5 
                               -    Term      8135 -      8171    6.3 
     6     5 Tu  1     .       -    CDS       8186 -      9250    705  ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase
                               -    Prom      9350 -      9409    6.1 
     7     6 Op  1   9/0.000   -    CDS       9595 -     10866   1130  ## COG2837 Predicted iron-dependent peroxidase
     8     6 Op  2   7/0.094   -    CDS      10872 -     11999   1599  ## COG2822 Predicted periplasmic lipoprotein involved in iron transport
     9     6 Op  3   1/0.938   -    CDS      12057 -     12887    922  ## COG0672 High-affinity Fe2+/Pb2+ permease
                               -    Prom     12983 -     13042    4.5 
    10     7 Tu  1     .       -    CDS      13430 -     14938   1723  ## COG0591 Na+/proline symporter
                               -    Prom     15032 -     15091    2.9 
    11     8 Tu  1     .       -    CDS      15097 -     15306     84  ## EcSMS35_2110 hypothetical protein
                               -    Prom     15462 -     15521    2.3 
                               +    Prom     15188 -     15247    7.9 
    12     9 Tu  1     .       +    CDS      15361 -     19323   4589  ## COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase
                               +    Term     19331 -     19371    6.2 
                               -    Term     19316 -     19359    2.0 
    13    10 Tu  1     .       -    CDS      19363 -     20001    681  ## COG1309 Transcriptional regulator
                               -    Prom     20145 -     20204    5.1 
                               +    Prom     20089 -     20148    3.6 
    14    11 Op  1   4/0.469   +    CDS      20289 -     21380   1012  ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
    15    11 Op  2   2/0.812   +    CDS      21380 -     22072    658  ## COG1335 Amidases related to nicotinamidase
    16    11 Op  3   5/0.312   +    CDS      22084 -     22470    414  ## COG0251 Putative translation initiation inhibitor, yjgF family
    17    11 Op  4   4/0.469   +    CDS      22478 -     23278    709  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
    18    11 Op  5   5/0.312   +    CDS      23288 -     23878    483  ## COG0778 Nitroreductase
    19    11 Op  6   1/0.938   +    CDS      23889 -     24383    329  ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
    20    11 Op  7     .       +    CDS      24404 -     25732    723  ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18
                               +    Term     25756 -     25795   -0.9 
                               -    Term     25904 -     25933    1.9 
    21    12 Tu  1     .       -    CDS      25989 -     26162     91  ## COG3729 General stress protein
                               -    Prom     26327 -     26386    4.7 
                               +    Prom     26306 -     26365    3.7 
    22    13 Op  1     .       +    CDS      26535 -     27131    679  ## COG0655 Multimeric flavodoxin WrbA
    23    13 Op  2     .       +    CDS      27152 -     27379    363  ## LF82_2690 uncharacterized protein YccJ
                               +    Term     27385 -     27423    8.3 
    24    14 Tu  1     .       -    CDS      27417 -     28658   1559  ## JW0987 glucose-1-phosphatase/inositol phosphatase
                               -    Prom     28851 -     28910    5.5 
                               -    Term     28765 -     28807    1.8 
    25    15 Tu  1     .       -    CDS      28951 -     30207    376  ## EcolC_2594 hypothetical protein
                               -    Prom     30244 -     30303    4.8 
    26    16 Op  1     .       +    CDS      30468 -     31388   1069  ## COG2214 DnaJ-class molecular chaperone
    27    16 Op  2     .       +    CDS      31388 -     31693    344  ## ECB_01002 modulator of CbpA co-chaperone
                               -    Term     31756 -     31816    4.4 
    28    17 Op  1   5/0.312   -    CDS      31845 -     32444    611  ## COG3381 Uncharacterized component of anaerobic dehydrogenases
    29    17 Op  2   7/0.094   -    CDS      32441 -     34987   2584  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    30    17 Op  3     .       -    CDS      34987 -     36159   1119  ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit
                               -    Prom     36222 -     36281    4.5 
                               +    Prom     36124 -     36183    3.3 
    31    18 Tu  1     .       +    CDS      36289 -     36981    801  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
    32    19 Tu  1     .       -    CDS      36954 -     37982    711  ## COG1879 ABC-type sugar transport system, periplasmic component
                               -    Prom     38061 -     38120    2.1 
                               +    Prom     37961 -     38020    3.3 
    33    20 Op  1   1/0.938   +    CDS      38095 -     40809   2532  ## COG0642 Signal transduction histidine kinase
    34    20 Op  2     .       +    CDS      40881 -     41954    648  ## COG0348 Polyferredoxin
                               +    Term     41984 -     42027   -0.5 
                               -    Term     41955 -     41996    5.6 
    35    21 Tu  1     .       -    CDS      42003 -     42176    271  ## ECB_00994 predicted regulator of phosphatidylethanolamine synthesis
                               -    Prom     42298 -     42357    4.2 
                               -    Term     42335 -     42365    1.0 
    36    22 Tu  1     .       -    CDS      42570 -     42782    290  ## COG1278 Cold shock proteins
                               -    Prom     42971 -     43030    6.0 
                               +    Prom     42952 -     43011    6.8 
    37    23 Tu  1     .       +    CDS      43068 -     43280    206  ## COG1278 Cold shock proteins
                               +    Term     43512 -     43556   -0.2 
                               +    Prom     43464 -     43523    5.9 
    38    24 Tu  1     .       +    CDS      43723 -     44028    176  ## 
                               +    Term     44066 -     44102    4.1 
                               +    Prom     44099 -     44158    7.8 
    39    25 Op  1     .       +    CDS      44201 -     44779    396  ## B21_00996 hypothetical protein
    40    25 Op  2     .       +    CDS      44776 -     45522    500  ## JW0968 conserved hypothetical protein
    41    25 Op  3     .       +    CDS      45522 -     47618   1869  ## JW0967 conserved hypothetical protein
    42    25 Op  4   6/0.125   +    CDS      47664 -     48803    880  ## COG1596 Periplasmic protein involved in polysaccharide export
    43    25 Op  5   3/0.719   +    CDS      48791 -     49237    497  ## COG0394 Protein-tyrosine-phosphatase
    44    25 Op  6     .       +    CDS      49257 -     51437   2133  ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis
                               +    Term     51517 -     51552    6.0 
    45    26 Op  1     .       -    CDS      51552 -     52850    747  ## EcolC_2616 phosphoanhydride phosphorylase
    46    26 Op  2     .       -    CDS      52930 -     53022     69  ## 
    47    26 Op  3  31/0.000   -    CDS      53035 -     54171   1167  ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2
    48    26 Op  4     .       -    CDS      54183 -     55727   1657  ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1
                               -    Prom     55760 -     55819    2.2 
    49    27 Op  1     .       -    CDS      55861 -     56718    689  ## B21_00987 hypothetical protein
    50    27 Op  2     .       -    CDS      56715 -     57113    503  ## LF82_1053 hydrogenase-1 operon protein HyaE
    51    27 Op  3   7/0.094   -    CDS      57110 -     57697    735  ## COG0680 Ni,Fe-hydrogenase maturation factor
    52    27 Op  4   8/0.031   -    CDS      57694 -     58401    769  ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit
    53    27 Op  5  11/0.000   -    CDS      58420 -     60213   1946  ## COG0374 Ni,Fe-hydrogenase I large subunit
    54    27 Op  6     .       -    CDS      60210 -     61328    819  ## COG1740 Ni,Fe-hydrogenase I small subunit
                               -    Prom     61484 -     61543    2.7 
                               +   TRNA      61755 -     61842   76.9  # Ser TGA 0 0
                               +    Prom     61767 -     61826   80.4 
    55    28 Op  1   2/0.812   +    CDS      62049 -     62708    880  ## COG0670 Integral membrane protein, interacts with FtsH
                               +    Term     62728 -     62767    3.1 
                               +    Prom     62716 -     62775    4.8 
    56    28 Op  2     .       +    CDS      62799 -     63128    604  ## COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit
                               -    Term     63021 -     63064    1.6 
    57    29 Tu  1     .       -    CDS      63125 -     63403    363  ## COG1254 Acylphosphatases
                               -    Prom     63487 -     63546    2.4 
                               +    Prom     63369 -     63428    2.0 
    58    30 Op  1   3/0.719   +    CDS      63498 -     64688    580  ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative
    59    30 Op  2     .       +    CDS      64746 -     65063    428  ## COG3785 Uncharacterized conserved protein
                               +    Term     65076 -     65117   10.2 
                               -    Term     65064 -     65103    9.0 
    60    31 Tu  1     .       -    CDS      65108 -     65521    613  ## COG1832 Predicted CoA-binding protein
                               -    Prom     65641 -     65700    3.7 
    61    32 Op  1     .       +    CDS      65496 -     65654     70  ## EcSMS35_2154 hypothetical protein
    62    32 Op  2   3/0.719   +    CDS      65694 -     66356    618  ## COG3110 Uncharacterized protein conserved in bacteria
                               +    Term     66366 -     66392   -1.0 
    63    32 Op  3     .       +    CDS      66443 -     66910    390  ## COG1803 Methylglyoxal synthase
                               +    Term     66918 -     66949    4.1 
                               -    Term     66819 -     66857    1.2 
    64    33 Tu  1     .       -    CDS      66942 -     69014   1683  ## COG0210 Superfamily I DNA and RNA helicases
                               -    Prom     69063 -     69122    4.7 
                               +    Prom     69027 -     69086    3.6 
    65    34 Op  1   5/0.312   +    CDS      69119 -     69565    486  ## COG3304 Predicted membrane protein
    66    34 Op  2     .       +    CDS      69575 -     71737   1947  ## COG1289 Predicted membrane protein
                               +    Term     71753 -     71801    3.9 
    67    35 Tu  1     .       -    CDS      71700 -     72329    537  ## COG3070 Regulator of competence-specific genes
                               -    Prom     72361 -     72420    4.5 
                               +    Prom     72296 -     72355    5.7 
    68    36 Tu  1     .       +    CDS      72548 -     73057    262  ## COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation
                               +    Term     73128 -     73171    3.1 
                               +    Prom     73202 -     73261   12.2 
    69    37 Tu  1     .       +    CDS      73414 -     74454   1149  ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins
                               +    Term     74465 -     74513   11.3 
                               -    Term     74463 -     74490    1.5 
    70    38 Tu  1     .       -    CDS      74530 -     74982    488  ## COG3120 Uncharacterized protein conserved in bacteria
                               -    Prom     75008 -     75067    4.0 
                               +    Prom     75081 -     75140    3.7 
    71    39 Op  1   8/0.031   +    CDS      75168 -     76928   1463  ## COG1067 Predicted ATP-dependent protease
    72    39 Op  2     .       +    CDS      76997 -     77515    754  ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
                               +    Term     77543 -     77578    4.5 
                               -    Term     77530 -     77567    9.1 
    73    40 Tu  1     .       -    CDS      77585 -     77752     92  ## COG3130 Ribosome modulation factor
                               -    Prom     77829 -     77888    3.3 
                               -    Term     77945 -     77985    4.1 
    74    41 Op  1   8/0.031   -    CDS      78008 -     78571    680  ## COG3009 Uncharacterized protein conserved in bacteria
    75    41 Op  2  11/0.000   -    CDS      78568 -     80208   1516  ## COG3008 Paraquat-inducible protein B
    76    41 Op  3   5/0.312   -    CDS      80213 -     81466    779  ## COG2995 Uncharacterized paraquat-inducible protein A
                               -    Prom     81530 -     81589    1.6 
    77    42 Op  1   6/0.125   -    CDS      81596 -     83503   2438  ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains
    78    42 Op  2     .       -    CDS      83515 -     85623    178  ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative
                               -    Prom     85796 -     85855    5.8 
                               +    Prom     85742 -     85801    3.4 
    79    43 Tu  1     .       +    CDS      85909 -     86976    659  ## COG3217 Uncharacterized Fe-S protein
                               -    Term     86668 -     86729    0.5 
    80    44 Tu  1     .       -    CDS      86973 -     87515    471  ## SSON_0950 hypothetical protein
                               -    Prom     87615 -     87674    6.7 
                               -    Term     87612 -     87667   12.9 
    81    45 Tu  1     .       -    CDS      87689 -     88699    962  ## COG0167 Dihydroorotate dehydrogenase
                               -    Prom     88731 -     88790    4.0 
    82    46 Tu  1     .       +    CDS      88643 -     88852    157  ## gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729
    83    47 Tu  1     .       -    CDS      88810 -     89202    167  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom     89348 -     89407    1.6 
                               -    Term     89340 -     89366   -0.6 
    84    48 Op  1   4/0.469   -    CDS      89513 -     90028    250  ## COG3539 P pilus assembly protein, pilin FimA
    85    48 Op  2   4/0.469   -    CDS      90036 -     90578    291  ## COG3539 P pilus assembly protein, pilin FimA
    86    48 Op  3   6/0.125   -    CDS      90590 -     91633    465  ## COG3539 P pilus assembly protein, pilin FimA
    87    48 Op  4  10/0.000   -    CDS      91651 -     94101   1692  ## COG3188 P pilus assembly protein, porin PapC
                               -    Prom     94205 -     94264    2.3 
    88    48 Op  5   7/0.094   -    CDS      94273 -     94974    246  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom     94994 -     95053    4.0 
                               -    Term     94992 -     95025    6.1 
    89    49 Tu  1     .       -    CDS      95057 -     95596    340  ## COG3539 P pilus assembly protein, pilin FimA
                               +    Prom     95788 -     95847    6.5 
    90    50 Op  1   4/0.469   +    CDS      95952 -     96527    587  ## COG0431 Predicted flavoprotein
    91    50 Op  2   5/0.312   +    CDS      96520 -     97479   1031  ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
    92    50 Op  3   8/0.031   +    CDS      97476 -     98621   1228  ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
    93    50 Op  4  24/0.000   +    CDS      98632 -     99423    750  ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
    94    50 Op  5     .       +    CDS      99420 -    100187    218  ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16
                               +    Term    100193 -    100236   12.2 
                               -    Term    100177 -    100225    5.7 
    95    51 Tu  1     .       -    CDS     100230 -    102842   3020  ## COG0308 Aminopeptidase N
                               -    Prom    102949 -    103008    4.3 
                               +    Prom    102806 -    102865    3.5 
    96    52 Tu  1     .       +    CDS     103060 -    104310   1192  ## COG1488 Nicotinic acid phosphoribosyltransferase
                               +    Term    104319 -    104348    1.2 
    97    53 Tu  1     .       -    CDS     104316 -    104585     85  ## 
                               +    Prom    104361 -    104420    6.4 
    98    54 Tu  1     .       +    CDS     104479 -    105879   1695  ## COG0017 Aspartyl/asparaginyl-tRNA synthetases
                               +    Term    105894 -    105925    4.1 
                               +    Prom    106268 -    106327    7.8 
    99    55 Tu  1     .       +    CDS     106481 -    107569   1370  ## COG3203 Outer membrane protein (porin)
                               +    Term    107594 -    107634    4.2 
                               +    Prom    107660 -    107719    5.0 
   100    56 Tu  1     .       +    CDS     107754 -    108944   1492  ## COG1448 Aspartate/tyrosine/aromatic aminotransferase
                               +    Term    109134 -    109165    1.1 
                               -    Term    108992 -    109029    2.2 
   101    57 Op  1   7/0.094   -    CDS     109166 -    109813    569  ## COG0491 Zn-dependent hydrolases, including glyoxylases
   102    57 Op  2   9/0.000   -    CDS     109840 -    110388    424  ## COG3108 Uncharacterized protein conserved in bacteria
                               -    Prom    110441 -    110500    2.4 
                               -    Term    110434 -    110480    5.5 
   103    57 Op  3   4/0.469   -    CDS     110569 -    112416   1329  ## COG2989 Uncharacterized protein conserved in bacteria
                               -    Prom    112532 -    112591    6.5 
                               -    Term    112640 -    112670    3.0 
   104    58 Op  1   8/0.031   -    CDS     112677 -    117137   6044  ## COG3096 Uncharacterized protein involved in chromosome partitioning
   105    58 Op  2   7/0.094   -    CDS     117137 -    117841    805  ## COG3095 Uncharacterized protein involved in chromosome partitioning
   106    58 Op  3   6/0.125   -    CDS     117822 -    119144   1608  ## COG3006 Uncharacterized protein involved in chromosome partitioning
   107    58 Op  4     .       -    CDS     119141 -    119926    700  ## COG0500 SAM-dependent methyltransferases
                               -    Prom    120059 -    120118    5.2 
   108    59 Tu  1     .       +    CDS     120062 -    120841    656  ## COG1434 Uncharacterized conserved protein
                               +    Term    121063 -    121100   -0.9 
                               -    Term    120555 -    120611   -0.8 
   109    60 Tu  1     .       -    CDS     120818 -    121711    716  ## JW0902 conserved hypothetical protein
                               -    Prom    121748 -    121807    4.8 
                               -    Term    121792 -    121833    3.4 
   110    61 Op  1  11/0.000   -    CDS     121865 -    122611    788  ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase
   111    61 Op  2   4/0.469   -    CDS     122608 -    122790    184  ## COG2835 Uncharacterized conserved protein
   112    61 Op  3   4/0.469   -    CDS     122842 -    124074    742  ## COG3214 Uncharacterized protein conserved in bacteria
   113    61 Op  4   9/0.000   -    CDS     124111 -    125097    658  ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase
   114    61 Op  5   5/0.312   -    CDS     125094 -    126842    242  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
   115    61 Op  6   2/0.812   -    CDS     126879 -    129143    673  ## COG0658 Predicted membrane metal-binding protein
                               -    Prom    129224 -    129283    3.6 
                               -    Term    129284 -    129329    9.2 
   116    62 Tu  1     .       -    CDS     129351 -    129635    353  ## COG0776 Bacterial nucleoid DNA-binding protein
                               -    Term    129680 -    129709    3.5 
   117    63 Op  1     .       -    CDS     129755 -    129853    150  ## PROTEIN SUPPORTED gi|238903721|ref|ZP_04649193.1| ribosomal protein S1
   118    63 Op  2  21/0.000   -    CDS     129795 -    131468   2807  ## PROTEIN SUPPORTED gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1
                               -    Term    131522 -    131558    1.3 
   119    63 Op  3   3/0.719   -    CDS     131579 -    132262    267  ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1
                               -    Prom    132300 -    132359    5.0 
                               -    Term    132287 -    132320    2.3 
   120    64 Tu  1     .       -    CDS     132435 -    133199    869  ## COG0501 Zn-dependent protease with chaperone function
                               -    Prom    133306 -    133365    3.2 
                               -    Term    133293 -    133324    2.0 
   121    65 Op  1   6/0.125   -    CDS     133368 -    134651   1359  ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase
                               -    Term    134669 -    134702    4.1 
   122    65 Op  2   4/0.469   -    CDS     134722 -    135810   1066  ## COG1932 Phosphoserine aminotransferase
                               -    Prom    135867 -    135926    3.3 
   123    66 Tu  1     .       -    CDS     136009 -    136701    675  ## COG2323 Predicted membrane protein
                               -    Prom    136787 -    136846    1.9 
                               +    Prom    136658 -    136717    2.9 
   124    67 Tu  1     .       +    CDS     136831 -    138591   1946  ## COG1944 Uncharacterized conserved protein
                               +    Term    138601 -    138629    0.7 
   125    68 Op  1   7/0.094   +    CDS     138997 -    139854    673  ## COG2116 Formate/nitrite family of transporters
   126    68 Op  2  11/0.000   +    CDS     139909 -    142191   2558  ## COG1882 Pyruvate-formate lyase
                               +    Term    142234 -    142265    3.2 
                               +    Prom    142241 -    142300    2.9 
   127    68 Op  3     .       +    CDS     142383 -    143123    698  ## COG1180 Pyruvate-formate lyase-activating enzyme
                               +    Term    143131 -    143175    7.3 
                               -    Term    143025 -    143059    1.1 
   128    69 Tu  1     .       -    CDS     143205 -    143795    424  ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)
                               -    Prom    143820 -    143879    3.2 
                               +    Prom    143795 -    143854    2.6 
   129    70 Tu  1     .       +    CDS     143895 -    144803    404  ## COG0583 Transcriptional regulator
                               -    Term    144659 -    144690   -0.1 
   130    71 Tu  1     .       -    CDS     144804 -    146234   1394  ## COG0531 Amino acid transporters
                               -    Prom    146318 -    146377    9.1 
                               -    Term    146390 -    146433    8.5 
   131    72 Tu  1     .       -    CDS     146444 -    147592   1052  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    147622 -    147681    3.8 
                               +    Prom    147641 -    147700    4.3 
   132    73 Tu  1     .       +    CDS     147906 -    148532    619  ## COG1335 Amidases related to nicotinamidase
                               +    Term    148540 -    148569    1.1 
                               -    Term    148527 -    148557    2.1 
   133    74 Op  1   9/0.000   -    CDS     148567 -    149430    888  ## COG3302 DMSO reductase anchor subunit
   134    74 Op  2  16/0.000   -    CDS     149432 -    150049    647  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
   135    74 Op  3   2/0.812   -    CDS     150060 -    152504   2581  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Prom    152553 -    152612    4.6 
                               -    Term    152692 -    152717   -0.5 
   136    75 Op  1   8/0.031   -    CDS     152743 -    154035   1501  ## COG0172 Seryl-tRNA synthetase
                               -    Term    154094 -    154125   -1.0 
   137    75 Op  2   8/0.031   -    CDS     154126 -    155469   1085  ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase
   138    75 Op  3  10/0.000   -    CDS     155480 -    156091    669  ## COG2834 Outer membrane lipoprotein-sorting protein
   139    75 Op  4   7/0.094   -    CDS     156250 -    160239   3874  ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins
                               -    Prom    160291 -    160350    2.6 
                               -    Term    160274 -    160317    9.2 
   140    76 Tu  1     .       -    CDS     160374 -    160868    584  ## COG1522 Transcriptional regulators
                               +    Prom    161325 -    161384    5.8 
   141    77 Tu  1     .       +    CDS     161413 -    162378    733  ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9
                               +    Term    162405 -    162449    8.0 
                               +    Prom    162406 -    162465    6.1 
   142    78 Op  1  14/0.000   +    CDS     162501 -    164267    170  ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P
   143    78 Op  2   5/0.312   +    CDS     164268 -    165989   1630  ## COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
   144    78 Op  3   5/0.312   +    CDS     166031 -    166735    400  ## COG2360 Leu/Phe-tRNA-protein transferase
                               +    Term    166924 -    166960   -1.0 
                               +    Prom    166925 -    166984    3.7 
   145    79 Tu  1     .       +    CDS     167020 -    167238    257  ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1
                               +    Term    167275 -    167314    5.5 
                               +   TRNA     167492 -    167579   68.6  # Ser GGA 0 0
                               -    Term    167478 -    167547   31.4 
   146    80 Op  1     .       -    CDS     167730 -    168575    426  ## ECUMN_3414 hypothetical protein
                               -    Term    168591 -    168629    5.9 
   147    80 Op  2     .       -    CDS     168657 -    168854    199  ## EC55989_4897 hypothetical protein
   148    80 Op  3     .       -    CDS     168871 -    169122    181  ## EcSMS35_2241 hypothetical protein
   149    80 Op  4     .       -    CDS     169141 -    169362    317  ## EcSMS35_2245 hypothetical protein
   150    80 Op  5     .       -    CDS     169425 -    169901    427  ## COG2003 DNA repair proteins
   151    80 Op  6     .       -    CDS     169917 -    170390    518  ## UTI89_C2275 hypothetical protein
                               -    Prom    170574 -    170633    1.9 
   152    81 Tu  1     .       -    CDS     170732 -    171550    648  ## EcE24377A_4894 hypothetical protein
                               -    Term    171759 -    171800   -0.7 
   153    82 Tu  1     .       -    CDS     171988 -    172470    340  ## ECO103_3759 hypothetical protein
   154    83 Tu  1     .       -    CDS     172913 -    173455    388  ## SDY_1017 hypothetical protein
                               -    Prom    173483 -    173542    5.2 
                               -    Term    173527 -    173585   10.2 
   155    84 Op  1     .       -    CDS     173590 -    174063    184  ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily
   156    84 Op  2   2/0.812   -    CDS     174017 -    174538    411  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom    174754 -    174813    3.1 
                               -    Term    174756 -    174792    3.4 
   157    85 Tu  1     .       -    CDS     174910 -    175284    244  ## COG3596 Predicted GTPase
Predicted protein(s)
>gi|223713575|gb|ACDM01000023.1| GENE     1         8  -       424    220    138 aa, chain - ## HITS:1  COG:ycdT_2 KEGG:ns NR:ns ## COG: ycdT_2 COG2199 # Protein_GI_number: 16128989 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 1     138      65     202     202     271  100.0  2e-73
MIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTER
AKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKE
TGRNKVVVRDVVNFCESP
>gi|223713575|gb|ACDM01000023.1| GENE     2      1953  -      4376   1385    807 aa, chain + ## HITS:1  COG:no KEGG:B21_01033 NR:ns ## KEGG: B21_01033 # Name: ycdS # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     807       1     807     807    1563  100.0  0
MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIEARKGNTQPALSWFALK
SALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYAAVAVAYRNLQQWQNSLTL
WQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGR
HQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSF
MPTRSESERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISH
YQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFY
SHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQA
EMTARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTAL
TLQEWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDV
DLTTIVYSPPLKDNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVF
NHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRK
YGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTF
DIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGA
TLRWEKRPYDGDREHNLYVEFDMTFRF
>gi|223713575|gb|ACDM01000023.1| GENE     3      4385  -      6403   1117    672 aa, chain + ## HITS:1  COG:ycdR KEGG:ns NR:ns ## COG: ycdR COG0726 # Protein_GI_number: 16128987 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1     672       1     672     672    1344  100.0  0
MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE
AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF
YTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVE
LASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK
VEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE
FAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPD
GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT
GEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPA
ITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIF
ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQA
KDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIR
PEFSTAWYPKND
>gi|223713575|gb|ACDM01000023.1| GENE     4      6516  -      7721    839    401 aa, chain + ## HITS:1  COG:ycdQ KEGG:ns NR:ns ## COG: ycdQ COG1215 # Protein_GI_number: 16128986 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1     401      41     441     441     806  100.0  0
MSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQ
RYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLV
CIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRT
QRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWI
LMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGF
IIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIW
FPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG
>gi|223713575|gb|ACDM01000023.1| GENE     5      7834  -      8136    152    100 aa, chain + ## HITS:1  COG:no KEGG:ECB_01023 NR:ns ## KEGG: ECB_01023 # Name: pgaD # Def: predicted inner membrane protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     100      38     137     137     171  100.0  7e-42
MDLLTGYYWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAE
SLAIPDELYQQLQKSHRMSVHFTSQGQIKMVVSEKALVRA
>gi|223713575|gb|ACDM01000023.1| GENE     6      8186  -      9250    705    354 aa, chain - ## HITS:1  COG:ECs1266 KEGG:ns NR:ns ## COG: ECs1266 COG1702 # Protein_GI_number: 15830520 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Escherichia coli O157:H7 # 1     354       1     354     354     716  100.0  0
MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDAVNGARSRFSAFYPKAN
YGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVIKARREAKRVLRRDSRSHKQR
EEESVTSLVQMGGVEAIGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKT
WISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA
SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIV
NGDITQCDLPRGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS
>gi|223713575|gb|ACDM01000023.1| GENE     7      9595  -     10866   1130    423 aa, chain - ## HITS:1  COG:ycdB KEGG:ns NR:ns ## COG: ycdB COG2837 # Protein_GI_number: 16128983 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Escherichia coli K12 # 1     423       1     423     423     866  100.0  0
MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGTLSPDARNEKQPFYGEH
QAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS
GILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ
ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT
GAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSG
QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYFGSAL
LRV
>gi|223713575|gb|ACDM01000023.1| GENE     8     10872  -     11999   1599    375 aa, chain - ## HITS:1  COG:ycdO KEGG:ns NR:ns ## COG: ycdO COG2822 # Protein_GI_number: 16128982 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted periplasmic lipoprotein involved in iron transport # Organism: Escherichia coli K12 # 1     375       1     375     375     706  100.0  0
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNH
SQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEAT
ADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHY
ERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLY
TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQK
IVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITA
LAEDLAQLRGVLGLD
>gi|223713575|gb|ACDM01000023.1| GENE     9     12057  -     12887    922    276 aa, chain - ## HITS:1  COG:ECs1263 KEGG:ns NR:ns ## COG: ECs1263 COG0672 # Protein_GI_number: 15830517 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Escherichia coli O157:H7 # 1     276       1     276     276     455  100.0  1e-128
MFVPFLIMLREGLEAALIVSLIASYLKRTQRGRWIGVMWIGVLLAAALCLGLGIFINETT
GEFPQKEQELFEGIVAVIAVVILTWMVFWMRKVSRNVKVQLEQAVDSALQRGNHHGWALV
MMVFFAVAREGLESVFFLLAAFQQDVGIWPPLGAMLGLATAVVLGFLLYWGGIRLNLGAF
FKWTSLFILFVAAGLAAGAIRAFHEAGLWNHFQEIAFDMSAVLSTHSLFGTLMEGIFGYQ
EAPSVSEVAVWFIYLIPALVAFALPPRAGATASRSA
>gi|223713575|gb|ACDM01000023.1| GENE    10     13430  -     14938   1723    502 aa, chain - ## HITS:1  COG:putP KEGG:ns NR:ns ## COG: putP COG0591 # Protein_GI_number: 16128981 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Escherichia coli K12 # 1     502       1     502     502     891  100.0  0
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWL
LMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFED
KSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGF
LAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIIS
LMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNDHP
ALAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKA
FLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSV
MWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAM
QKRFAEADAHYHSAPPSRLQES
>gi|223713575|gb|ACDM01000023.1| GENE    11     15097  -     15306     84     69 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_2110 NR:ns ## KEGG: EcSMS35_2110 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      69       1      69      69     101  100.0  1e-20
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECN
LMKNSVAEH
>gi|223713575|gb|ACDM01000023.1| GENE    12     15361  -     19323   4589   1320 aa, chain + ## HITS:1  COG:putA_2 KEGG:ns NR:ns ## COG: putA_2 COG4230 # Protein_GI_number: 16128980 # Func_class: C Energy production and conversion # Function: Delta 1-pyrroline-5-carboxylate dehydrogenase # Organism: Escherichia coli K12 # 526    1320       1     795     795    1538   99.0  0
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGA
ANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPV
AEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKAT
RDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSG
EPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY
MVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLA
RQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDL
ATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLI
YPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIY
APVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGL
PHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEM
SPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQ
MQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNF
PLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGA
QLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQ
VVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRIGNPGRLTTDIGPVI
DSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVF
GPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVG
AVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALT
QPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDE
QDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHG
DSDQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>gi|223713575|gb|ACDM01000023.1| GENE    13     19363  -     20001    681    212 aa, chain - ## HITS:1  COG:ycdC KEGG:ns NR:ns ## COG: ycdC COG1309 # Protein_GI_number: 16128979 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     212       1     212     212     412  100.0  1e-115
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP
SKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEML
AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQV
EAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>gi|223713575|gb|ACDM01000023.1| GENE    14     20289  -     21380   1012    363 aa, chain + ## HITS:1  COG:ycdM KEGG:ns NR:ns ## COG: ycdM COG2141 # Protein_GI_number: 16128978 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     363      20     382     382     745  100.0  0
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEF
WDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGW
QKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSV
PMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVL
FMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNIN
MGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQ
EVA
>gi|223713575|gb|ACDM01000023.1| GENE    15     21380  -     22072    658    230 aa, chain + ## HITS:1  COG:ycdL KEGG:ns NR:ns ## COG: ycdL COG1335 # Protein_GI_number: 16128977 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1     230      15     244     244     469  100.0  1e-132
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAA
RAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVD
ELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYF
GVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>gi|223713575|gb|ACDM01000023.1| GENE    16     22084  -     22470    414    128 aa, chain + ## HITS:1  COG:ycdK KEGG:ns NR:ns ## COG: ycdK COG0251 # Protein_GI_number: 16128976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1     128       1     128     128     250  100.0  4e-67
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIR
KVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEI
ATIAHIAK
>gi|223713575|gb|ACDM01000023.1| GENE    17     22478  -     23278    709    266 aa, chain + ## HITS:1  COG:ycdJ KEGG:ns NR:ns ## COG: ycdJ COG0596 # Protein_GI_number: 16128975 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1     266       1     266     266     503  100.0  1e-142
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAED
YSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAH
TRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLR
RLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACN
VTDPETFNALLLNGLASLLHHREAAL
>gi|223713575|gb|ACDM01000023.1| GENE    18     23288  -     23878    483    196 aa, chain + ## HITS:1  COG:ycdI KEGG:ns NR:ns ## COG: ycdI COG0778 # Protein_GI_number: 16128974 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1     196       1     196     196     387  100.0  1e-108
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTA
EGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEET
AFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKL
YARLPRLSFEEACGLL
>gi|223713575|gb|ACDM01000023.1| GENE    19     23889  -     24383    329    164 aa, chain + ## HITS:1  COG:ycdH KEGG:ns NR:ns ## COG: ycdH COG1853 # Protein_GI_number: 16128973 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 13     164       1     152     152     308  100.0  2e-84
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVW
PAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCR
ISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>gi|223713575|gb|ACDM01000023.1| GENE    20     24404  -     25732    723    442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 24     428       8     421     447 283  37 5e-75
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNL
SILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACG
LVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTV
LCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFS
TPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVG
GSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVV
FGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAIL
LNALLSRKLVDVPPPEVVHQEP
>gi|223713575|gb|ACDM01000023.1| GENE    21     25989  -     26162     91     57 aa, chain - ## HITS:1  COG:STM1121 KEGG:ns NR:ns ## COG: STM1121 COG3729 # Protein_GI_number: 16764478 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1      55       1      55      55      59   92.0  1e-09
MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
>gi|223713575|gb|ACDM01000023.1| GENE    22     26535  -     27131    679    198 aa, chain + ## HITS:1  COG:wrbA KEGG:ns NR:ns ## COG: wrbA COG0655 # Protein_GI_number: 16128970 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Escherichia coli K12 # 1     198       1     198     198     349  100.0  2e-96
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPV
ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQ
EQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELS
IARYQGEYVAGLAVKLNG
>gi|223713575|gb|ACDM01000023.1| GENE    23     27152  -     27379    363     75 aa, chain + ## HITS:1  COG:no KEGG:LF82_2690 NR:ns ## KEGG: LF82_2690 # Name: yccJ # Def: uncharacterized protein YccJ # Organism: E.coli_LF82 # Pathway: not_defined # 1      75       1      75      75     125  100.0  6e-28
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDK
DSLFWGEQTIERKNV
>gi|223713575|gb|ACDM01000023.1| GENE    24     27417  -     28658   1559    413 aa, chain - ## HITS:1  COG:no KEGG:JW0987 NR:ns ## KEGG: JW0987 # Name: agp # Def: glucose-1-phosphatase/inositol phosphatase # Organism: E.coli_J # Pathway: Glycolysis / Gluconeogenesis [PATH:ecj00010] # 1     413       1     413     413     834  100.0  0
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNK
WPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVAT
AQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDS
YQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYY
EGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRT
SAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIE
YVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK
>gi|223713575|gb|ACDM01000023.1| GENE    25     28951  -     30207    376    418 aa, chain - ## HITS:1  COG:no KEGG:EcolC_2594 NR:ns ## KEGG: EcolC_2594 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     418       1     418     418     806   99.0  0
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEED
TPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVRDIDIVRVS
LPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLD
SDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYN
EFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFID
SCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLAVLSDSICSLFIVNSNVAS
ISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
>gi|223713575|gb|ACDM01000023.1| GENE    26     30468  -     31388   1069    306 aa, chain + ## HITS:1  COG:cbpA KEGG:ns NR:ns ## COG: cbpA COG2214 # Protein_GI_number: 16128966 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Escherichia coli K12 # 1     306       1     306     306     612  100.0  1e-175
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ
RRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDI
EIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQG
TPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLT
IPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPR
KDWGKA
>gi|223713575|gb|ACDM01000023.1| GENE    27     31388  -     31693    344    101 aa, chain + ## HITS:1  COG:no KEGG:ECB_01002 NR:ns ## KEGG: ECB_01002 # Name: yccD # Def: modulator of CbpA co-chaperone # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     101       1     101     101     189  100.0  2e-47
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLR
HELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>gi|223713575|gb|ACDM01000023.1| GENE    28     31845  -     32444    611    199 aa, chain - ## HITS:1  COG:torD KEGG:ns NR:ns ## COG: torD COG3381 # Protein_GI_number: 16128964 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli K12 # 1     199       1     199     199     375  100.0  1e-104
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENR
IATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFN
EPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCRQYDSFGF
YAALSQLLLVLVECDHQNR
>gi|223713575|gb|ACDM01000023.1| GENE    29     32441  -     34987   2584    848 aa, chain - ## HITS:1  COG:torA KEGG:ns NR:ns ## COG: torA COG0243 # Protein_GI_number: 16128963 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     848       1     848     848    1751  100.0  0
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWG
AIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQ
RGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALH
GNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANW
WCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLA
LAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLAR
QMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRK
GVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMC
IFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYG
NHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQ
GKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIAD
MNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGK
EPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGE
PGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEY
VPASQVKS
>gi|223713575|gb|ACDM01000023.1| GENE    30     34987  -     36159   1119    390 aa, chain - ## HITS:1  COG:torC KEGG:ns NR:ns ## COG: torC COG3005 # Protein_GI_number: 16128962 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli K12 # 1     390       1     390     390     801  100.0  0
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEE
YKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRA
ELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQ
LPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDG
DWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQ
ATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLD
KREERTLLKYLQMNASDTAGKAHGDKKEEK
>gi|223713575|gb|ACDM01000023.1| GENE    31     36289  -     36981    801    230 aa, chain + ## HITS:1  COG:torR KEGG:ns NR:ns ## COG: torR COG0745 # Protein_GI_number: 16128961 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     230       1     230     230     439  100.0  1e-123
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>gi|223713575|gb|ACDM01000023.1| GENE    32     36954  -     37982    711    342 aa, chain - ## HITS:1  COG:torT KEGG:ns NR:ns ## COG: torT COG1879 # Protein_GI_number: 16128960 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     342       1     342     342     638  100.0  0
MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL
SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK
QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG
SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM
GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD
NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK
>gi|223713575|gb|ACDM01000023.1| GENE    33     38095  -     40809   2532    904 aa, chain + ## HITS:1  COG:torS_1 KEGG:ns NR:ns ## COG: torS_1 COG0642 # Protein_GI_number: 16128959 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     650       1     650     650    1130  100.0  0
MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT
SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQR
LQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALD
RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI
EDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT
IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL
LDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEH
RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE
SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD
MPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLA
EIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP
KTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAA
LVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL
GQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQ
DSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKD
LNAI
>gi|223713575|gb|ACDM01000023.1| GENE    34     40881  -     41954    648    357 aa, chain + ## HITS:1  COG:yccM KEGG:ns NR:ns ## COG: yccM COG0348 # Protein_GI_number: 16128958 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Escherichia coli K12 # 1     357       1     357     357     702  100.0  0
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETA
SSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCS
WLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYF
MLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQK
PAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
>gi|223713575|gb|ACDM01000023.1| GENE    35     42003  -     42176    271     57 aa, chain - ## HITS:1  COG:no KEGG:ECB_00994 NR:ns ## KEGG: ECB_00994 # Name: gnsA # Def: predicted regulator of phosphatidylethanolamine synthesis # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      57       1      57      57      75  100.0  4e-13
MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM
>gi|223713575|gb|ACDM01000023.1| GENE    36     42570  -     42782    290     70 aa, chain - ## HITS:1  COG:ECs1145 KEGG:ns NR:ns ## COG: ECs1145 COG1278 # Protein_GI_number: 15830399 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      70       1      70      70     133  100.0  9e-32
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR
GPAAANVVTL
>gi|223713575|gb|ACDM01000023.1| GENE    37     43068  -     43280    206     70 aa, chain + ## HITS:1  COG:ECs1144 KEGG:ns NR:ns ## COG: ECs1144 COG1278 # Protein_GI_number: 15830398 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      70       1      70      70     137  100.0  5e-33
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR
GPTAANVYLS
>gi|223713575|gb|ACDM01000023.1| GENE    38     43723  -     44028    176    101 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTGATTTATTTGGVAAGAV
GTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR
>gi|223713575|gb|ACDM01000023.1| GENE    39     44201  -     44779    396    192 aa, chain + ## HITS:1  COG:no KEGG:B21_00996 NR:ns ## KEGG: B21_00996 # Name: ymcC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     192      23     214     214     375  100.0  1e-103
MVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNA
MLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLS
STFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGV
IPVEMTFLKPAP
>gi|223713575|gb|ACDM01000023.1| GENE    40     44776  -     45522    500    248 aa, chain + ## HITS:1  COG:no KEGG:JW0968 NR:ns ## KEGG: JW0968 # Name: ymcB # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     248       1     248     248     472  100.0  1e-132
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWW
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD
>gi|223713575|gb|ACDM01000023.1| GENE    41     45522  -     47618   1869    698 aa, chain + ## HITS:1  COG:no KEGG:JW0967 NR:ns ## KEGG: JW0967 # Name: ymcA # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     698       1     698     698    1422  100.0  0
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY
RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG
YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDK
YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEG
LQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ
GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRI
REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS
ELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG
QYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN
RNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
>gi|223713575|gb|ACDM01000023.1| GENE    42     47664  -     48803    880    379 aa, chain + ## HITS:1  COG:ECs1139 KEGG:ns NR:ns ## COG: ECs1139 COG1596 # Protein_GI_number: 15830393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Escherichia coli O157:H7 # 1     379       1     379     379     743   99.0  0
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLI
DQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWV
NADGAIFYPYIGRLKMAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVS
KSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFV
IRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPT
ISGVHDLTETSRWIQTWPN
>gi|223713575|gb|ACDM01000023.1| GENE    43     48791  -     49237    497    148 aa, chain + ## HITS:1  COG:ECs1138 KEGG:ns NR:ns ## COG: ECs1138 COG0394 # Protein_GI_number: 15830392 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Escherichia coli O157:H7 # 1     148       5     152     152     276  100.0  1e-74
MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANH
GVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDP
YRKSQDAFEHVYGMLERASQEWAKRLSR
>gi|223713575|gb|ACDM01000023.1| GENE    44     49257  -     51437   2133    726 aa, chain + ## HITS:1  COG:yccC_1 KEGG:ns NR:ns ## COG: yccC_1 COG3206 # Protein_GI_number: 16128947 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Escherichia coli K12 # 1     480       1     480     480     889   99.0  0
MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADT
LVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPI
VGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRL
EKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQ
LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSERDQAEEKLNVYRQQRDSV
DLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNK
RVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPV
KPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRT
RLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGAT
PDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKV
IQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVV
GRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGY
SYSEKE
>gi|223713575|gb|ACDM01000023.1| GENE    45     51552  -     52850    747    432 aa, chain - ## HITS:1  COG:no KEGG:EcolC_2616 NR:ns ## KEGG: EcolC_2616 # Name: not_defined # Def: phosphoanhydride phosphorylase # Organism: E.coli_ATCC8739 # Pathway: gamma-Hexachlorocyclohexane degradation [PATH:ecl00361]; Inositol phosphate metabolism [PATH:ecl00562]; Riboflavin metabolism [PATH:ecl00740] # 1     432      11     442     442     844   99.0  0
MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWP
TWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGE
AFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGH
RQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLT
EIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTA
LTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERW
RRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQ
IVNEARIPACSL
>gi|223713575|gb|ACDM01000023.1| GENE    46     52930  -     53022     69     30 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MWYLLWFVGILLMCSLSTLVLVWLDPRLKS
>gi|223713575|gb|ACDM01000023.1| GENE    47     53035  -     54171   1167    378 aa, chain - ## HITS:1  COG:appB KEGG:ns NR:ns ## COG: appB COG1294 # Protein_GI_number: 16128945 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Escherichia coli K12 # 1     378       1     378     378     666  100.0  0
MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD
AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV
ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS
NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG
VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK
MWGRMTTETLRRNENELY
>gi|223713575|gb|ACDM01000023.1| GENE    48     54183  -     55727   1657    514 aa, chain - ## HITS:1  COG:appC KEGG:ns NR:ns ## COG: appC COG1271 # Protein_GI_number: 16128944 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Escherichia coli K12 # 1     514       1     514     514     964   99.0  0
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFG
INFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQR
LNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVS
QVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALRSFAIGSVFGTLAIIGTLQLGDS
SAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSL
DKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRY
APDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHR
WVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVG
LYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG
>gi|223713575|gb|ACDM01000023.1| GENE    49     55861  -     56718    689    285 aa, chain - ## HITS:1  COG:no KEGG:B21_00987 NR:ns ## KEGG: B21_00987 # Name: hyaF # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     285       1     285     285     556  100.0  1e-157
MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL
SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV
RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN
PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT
LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT
>gi|223713575|gb|ACDM01000023.1| GENE    50     56715  -     57113    503    132 aa, chain - ## HITS:1  COG:no KEGG:LF82_1053 NR:ns ## KEGG: LF82_1053 # Name: hyaE # Def: hydrogenase-1 operon protein HyaE # Organism: E.coli_LF82 # Pathway: not_defined # 1     132       1     132     132     260   99.0  1e-68
MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGE
LLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM
RGLVEPQQERAS
>gi|223713575|gb|ACDM01000023.1| GENE    51     57110  -     57697    735    195 aa, chain - ## HITS:1  COG:hyaD KEGG:ns NR:ns ## COG: hyaD COG0680 # Protein_GI_number: 16128941 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli K12 # 1     195       1     195     195     360  100.0  1e-99
MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNLLGYVESASH
LLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALADIRGHLPAHIALV
GLQPAMLDDYGGSLSELAREQLPAAEQAALAQLAAWGIVPQPANESRCLNYDCLSMENYE
GVRLRQYRMTQEEQG
>gi|223713575|gb|ACDM01000023.1| GENE    52     57694  -     58401    769    235 aa, chain - ## HITS:1  COG:ECs1130 KEGG:ns NR:ns ## COG: ECs1130 COG1969 # Protein_GI_number: 15830384 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Escherichia coli O157:H7 # 1     235       1     235     235     433  100.0  1e-121
MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIR
LIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPS
ADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDI
HSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERS
>gi|223713575|gb|ACDM01000023.1| GENE    53     58420  -     60213   1946    597 aa, chain - ## HITS:1  COG:hyaB KEGG:ns NR:ns ## COG: hyaB COG0374 # Protein_GI_number: 16128939 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Escherichia coli K12 # 1     597       1     597     597    1273   99.0  0
MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL
QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL
VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG
IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA
INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC
VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ
VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY
HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAADKLQYFFDKLMTNLKNG
NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD
PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR
>gi|223713575|gb|ACDM01000023.1| GENE    54     60210  -     61328    819    372 aa, chain - ## HITS:1  COG:hyaA KEGG:ns NR:ns ## COG: hyaA COG1740 # Protein_GI_number: 16128938 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Escherichia coli K12 # 1     372       1     372     372     738  100.0  0
MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL
ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV
EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID
KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH
FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN
GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTE
TEHQPGNEDKQA
>gi|223713575|gb|ACDM01000023.1| GENE    55     62049  -     62708    880    219 aa, chain + ## HITS:1  COG:yccA KEGG:ns NR:ns ## COG: yccA COG0670 # Protein_GI_number: 16128937 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1     219       1     219     219     330  100.0  8e-91
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
GLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCC
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFET
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
>gi|223713575|gb|ACDM01000023.1| GENE    56     62799  -     63128    604    109 aa, chain + ## HITS:1  COG:ECs1053 KEGG:ns NR:ns ## COG: ECs1053 COG2920 # Protein_GI_number: 15830307 # Func_class: P Inorganic ion transport and metabolism # Function: Dissimilatory sulfite reductase (desulfoviridin), gamma subunit # Organism: Escherichia coli O157:H7 # 1     109      20     128     128     219  100.0  1e-57
MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHWEVVRFVRDFYLEFNTS
PAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>gi|223713575|gb|ACDM01000023.1| GENE    57     63125  -     63403    363     92 aa, chain - ## HITS:1  COG:ECs1052 KEGG:ns NR:ns ## COG: ECs1052 COG1254 # Protein_GI_number: 15830306 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Escherichia coli O157:H7 # 1      92       1      92      92     184  100.0  4e-47
MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQ
WLKSGGPRSARVERVLSEPHHPSGELTDFRIR
>gi|223713575|gb|ACDM01000023.1| GENE    58     63498  -     64688    580    396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 22     389      21     386     396 228  32 2e-58
MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQ
IRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITIDRF
GNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVAVRKKEGMELTQGPVTGELPP
ALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALM
GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD
PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDA
GRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRVM
>gi|223713575|gb|ACDM01000023.1| GENE    59     64746  -     65063    428    105 aa, chain + ## HITS:1  COG:ECs1050 KEGG:ns NR:ns ## COG: ECs1050 COG3785 # Protein_GI_number: 15830304 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     105      18     122     122     200  100.0  6e-52
MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDN
GLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPRLRN
>gi|223713575|gb|ACDM01000023.1| GENE    60     65108  -     65521    613    137 aa, chain - ## HITS:1  COG:yccU KEGG:ns NR:ns ## COG: yccU COG1832 # Protein_GI_number: 16128932 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Escherichia coli K12 # 1     137      28     164     164     269  100.0  1e-72
MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG
YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV
VMDRCPAIEIPRLGLAK
>gi|223713575|gb|ACDM01000023.1| GENE    61     65496  -     65654     70     52 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_2154 NR:ns ## KEGG: EcSMS35_2154 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      52       5      56      56      79  100.0  3e-14
MPAISVSFIISSRLFNKVYDKADMPTMQLIRMNESKSGKYVYMLVSMIKEKF
>gi|223713575|gb|ACDM01000023.1| GENE    62     65694  -     66356    618    220 aa, chain + ## HITS:1  COG:ECs1048 KEGG:ns NR:ns ## COG: ECs1048 COG3110 # Protein_GI_number: 15830302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     220       1     220     220     409  100.0  1e-114
MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLV
FRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLD
GDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSEL
DAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS
>gi|223713575|gb|ACDM01000023.1| GENE    63     66443  -     66910    390    155 aa, chain + ## HITS:1  COG:ECs1047 KEGG:ns NR:ns ## COG: ECs1047 COG1803 # Protein_GI_number: 15830301 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Escherichia coli O157:H7 # 1     155       1     155     155     313  100.0  9e-86
MYIMELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATG
MNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA
TNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK
>gi|223713575|gb|ACDM01000023.1| GENE    64     66942  -     69014   1683    690 aa, chain - ## HITS:1  COG:helD KEGG:ns NR:ns ## COG: helD COG0210 # Protein_GI_number: 16128929 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 7     690       1     684     684    1342  100.0  0
MWIYRVMELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLLAIHCKRGLVW
GELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGVLRQQLDLIATRT
GENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQAWLKDIESARLQHN
QAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLL
ARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQQGSKKVPIVS
KLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLAS
RLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGL
IHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYR
FSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGD
KKAVTLLDESQLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTI
HASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRLMYVALTRAR
HRVWALFNKENPSPFVEILKNLDVPVARKP
>gi|223713575|gb|ACDM01000023.1| GENE    65     69119  -     69565    486    148 aa, chain + ## HITS:1  COG:yccF KEGG:ns NR:ns ## COG: yccF COG3304 # Protein_GI_number: 16128928 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     134       1     134     148     239  100.0  2e-63
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVD
ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI
ALWPVGRRVVSVETAQAAREANARRRFE
>gi|223713575|gb|ACDM01000023.1| GENE    66     69575  -     71737   1947    720 aa, chain + ## HITS:1  COG:yccS KEGG:ns NR:ns ## COG: yccS COG1289 # Protein_GI_number: 16128927 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     720       1     720     720    1426   99.0  0
MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLD
DRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAF
GALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQL
ARYLELKSRMFDPDIEDQSHAPLYDLALANGLLMATLNQTKLSLLTRLRGDRGQRGTRRT
LHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQP
YQHDPHFERAFTHIDAALERMRDNGAPADLLKTLGFLLNNLRAIDAQLATIESEQAQALP
HNNDENELADDSPHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGY
WILLTSLFVCQPNYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFF
AFRNVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFR
NLPRMLERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPN
VTPQIREAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADE
ERVNEALASLKQRMQQLEPRADSKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA
>gi|223713575|gb|ACDM01000023.1| GENE    67     71700  -     72329    537    209 aa, chain - ## HITS:1  COG:yccR KEGG:ns NR:ns ## COG: yccR COG3070 # Protein_GI_number: 16128926 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Escherichia coli K12 # 1     209       1     209     209     407  100.0  1e-114
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYC
VKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLK
DLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHE
AALPVARRQELAEWADSLTPKQEFPAELE
>gi|223713575|gb|ACDM01000023.1| GENE    68     72548  -     73057    262    169 aa, chain + ## HITS:1  COG:ECs1042 KEGG:ns NR:ns ## COG: ECs1042 COG5404 # Protein_GI_number: 15830296 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: SOS-response cell division inhibitor, blocks FtsZ ring formation # Organism: Escherichia coli O157:H7 # 1     169       1     169     169     269  100.0  2e-72
MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPMMTQLLLLPLLQQLGQQ
SRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVESMVRALRTGNYSVVIGWLA
DDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSGLKIHSNLYH
>gi|223713575|gb|ACDM01000023.1| GENE    69     73414  -     74454   1149    346 aa, chain + ## HITS:1  COG:ECs1041 KEGG:ns NR:ns ## COG: ECs1041 COG2885 # Protein_GI_number: 15830295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 1     346       1     346     346     658  100.0  0
MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA
FGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGG
MVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDN
GMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQ
LYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGM
GESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA
>gi|223713575|gb|ACDM01000023.1| GENE    70     74530  -     74982    488    150 aa, chain - ## HITS:1  COG:ECs1040 KEGG:ns NR:ns ## COG: ECs1040 COG3120 # Protein_GI_number: 15830294 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     150       1     150     150     253  100.0  9e-68
MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDK
HMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIV
QLIEDAENKEKYANKMSSLKQDLQALLGKE
>gi|223713575|gb|ACDM01000023.1| GENE    71     75168  -     76928   1463    586 aa, chain + ## HITS:1  COG:ycbZ KEGG:ns NR:ns ## COG: ycbZ COG1067 # Protein_GI_number: 16128922 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent protease # Organism: Escherichia coli K12 # 1     586       1     586     586    1167  100.0  0
MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFML
AKAPEESEYLNLIANAARTLQSDAGQLVGGHYEVSGHSIRLRHAVSADDNFATLTQVVAA
DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTLLAQPLLWMRLKNIVNRERF
DWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD
AESVTQWCRWVTFTARHNHLPAPGADAWPILIREAARYTGEQETLPLSPQWILRQCKEVA
SLCDGDTFSGEQLNLMLQQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEF
PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP
FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLL
LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN
>gi|223713575|gb|ACDM01000023.1| GENE    72     76997  -     77515    754    172 aa, chain + ## HITS:1  COG:ECs1038 KEGG:ns NR:ns ## COG: ECs1038 COG0764 # Protein_GI_number: 15830292 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 # 1     172       1     172     172     344  100.0  4e-95
MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD
INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP
TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF
>gi|223713575|gb|ACDM01000023.1| GENE    73     77585  -     77752     92     55 aa, chain - ## HITS:1  COG:ECs1037 KEGG:ns NR:ns ## COG: ECs1037 COG3130 # Protein_GI_number: 15830291 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome modulation factor # Organism: Escherichia coli O157:H7 # 1      55       1      55      55      80  100.0  5e-16
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA
>gi|223713575|gb|ACDM01000023.1| GENE    74     78008  -     78571    680    187 aa, chain - ## HITS:1  COG:ymbA KEGG:ns NR:ns ## COG: ymbA COG3009 # Protein_GI_number: 16128919 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6     187       1     182     182     338   99.0  3e-93
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA
QEIKRLP
>gi|223713575|gb|ACDM01000023.1| GENE    75     78568  -     80208   1516    546 aa, chain - ## HITS:1  COG:pqiB KEGG:ns NR:ns ## COG: pqiB COG3008 # Protein_GI_number: 16128918 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Escherichia coli K12 # 1     546       1     546     546    1082  100.0  0
MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEVTLITANAEGIEGGKT
TIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDTVFWVVKPQIGREGISGLG
TLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRVILDSKKAGQLSPGDPVLFRG
YRVGSVETSTFDTQKRNISYQLFINAPYDRLVTNNVRFWKDSGIAVDLTSAGMRVEMGSL
TTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKSIQDSLYTDHIDYLMFFKDSVRGLQ
PGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYRIPVLIRIEPERLKMQLGENADVVEHL
GELLKRGLRGSLKTGNLVTGALYVDLDFYPNTPAITGIREFNGYQIIPTVSGGLAQIQQR
LMEALDKINKLPLNPMIEQATSTLSESQRTMKNLQTTLDSMNKILASQSMQQLPTDMQST
LRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEAKDKKDPE
PKRAKQ
>gi|223713575|gb|ACDM01000023.1| GENE    76     80213  -     81466    779    417 aa, chain - ## HITS:1  COG:pqiA KEGG:ns NR:ns ## COG: pqiA COG2995 # Protein_GI_number: 16128917 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli K12 # 1     417       1     417     417     790  100.0  0
MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAWDAPRQRPTAYALAALF
MLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTFFLLFVQLVPAFCLITILL
LVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGSIGVGSSFLPWCLF
CVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIRQGLRSCSCCTAILPADEPVCPR
CSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIMVTDLLGSKMPSTILAGVILLWSEG
SYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVF
VIAVLSALVRMGGLMSIYPAMGALMFALVVIMTMFSAMTFDPRLSWDRQPESEHEES
>gi|223713575|gb|ACDM01000023.1| GENE    77     81596  -     83503   2438    635 aa, chain - ## HITS:1  COG:ECs1033 KEGG:ns NR:ns ## COG: ECs1033 COG0488 # Protein_GI_number: 15830287 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1     635       1     635     635    1186   99.0  0
MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI
IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNEL
AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL
DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ
YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERRE
VMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTT
LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV
LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE
ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA
VKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP
HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG
>gi|223713575|gb|ACDM01000023.1| GENE    78     83515  -     85623    178    702 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 487     667     174     328     396 73  29 7e-12
MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLP
LGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAF
TRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAA
IVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVK
AEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPK
GPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRAD
KQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLKKFEKWARQEGIECYRL
YDADLPEYNVAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLK
TRERQKGKNQYQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGK
DFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA
WLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG
FRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNCWLITAA
>gi|223713575|gb|ACDM01000023.1| GENE    79     85909  -     86976    659    355 aa, chain + ## HITS:1  COG:ycbX_1 KEGG:ns NR:ns ## COG: ycbX_1 COG3217 # Protein_GI_number: 16128914 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1     259      15     273     273     543  100.0  1e-154
MRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGS
SAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRH
NTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIG
DVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGV
IRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLEN
QGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR
>gi|223713575|gb|ACDM01000023.1| GENE    80     86973  -     87515    471    180 aa, chain - ## HITS:1  COG:no KEGG:SSON_0950 NR:ns ## KEGG: SSON_0950 # Name: ycbW # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     180      13     192     192     374  100.0  1e-102
MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFSPAGFCVDDAALYFSF
EEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHGEMWVPMPGDAACVWLSDT
HEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKIMNDRLKPQVNVDSFSLEQAV
>gi|223713575|gb|ACDM01000023.1| GENE    81     87689  -     88699    962    336 aa, chain - ## HITS:1  COG:ECs1029 KEGG:ns NR:ns ## COG: ECs1029 COG0167 # Protein_GI_number: 15830283 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     336       1     336     336     679  100.0  0
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGL
AAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV
DNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPG
LRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNID
GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS
VIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
>gi|223713575|gb|ACDM01000023.1| GENE    82     88643  -     88852    157     69 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|213615837|ref|ZP_03371663.1| ## NR: gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] # 1      44       1      44      45      81   88.0  2e-14
MSALWIELEKGFTNEGVVHELSWIPGVQTGGVLCASSDQKGIDLRQKKRKRFPNLFQGRF
CSFFALNPP
>gi|223713575|gb|ACDM01000023.1| GENE    83     88810  -     89202    167    130 aa, chain - ## HITS:1  COG:ycbF KEGG:ns NR:ns ## COG: ycbF COG3121 # Protein_GI_number: 16128911 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     130     116     245     245     260   99.0  4e-70
MPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNS
QGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGG
LSAKKEQNLP
>gi|223713575|gb|ACDM01000023.1| GENE    84     89513  -     90028    250    171 aa, chain - ## HITS:1  COG:ycbV KEGG:ns NR:ns ## COG: ycbV COG3539 # Protein_GI_number: 16128910 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     171      17     187     187     345  100.0  2e-95
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFS
HGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDA
KILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD
>gi|223713575|gb|ACDM01000023.1| GENE    85     90036  -     90578    291    180 aa, chain - ## HITS:1  COG:ycbU KEGG:ns NR:ns ## COG: ycbU COG3539 # Protein_GI_number: 16128909 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     180       1     180     180     334  100.0  6e-92
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI
SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI
AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
>gi|223713575|gb|ACDM01000023.1| GENE    86     90590  -     91633    465    347 aa, chain - ## HITS:1  COG:ycbT KEGG:ns NR:ns ## COG: ycbT COG3539 # Protein_GI_number: 16128908 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     347      10     356     356     693   99.0  0
MSLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYIGVNFGVKTLEEEANTAGVVKDKFYQ
WNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTA
VPFENVGTGGDTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIPPMALARLYE
CYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAANFRVVGHKPL
GARTAELAIPVRCNTGNAGLVNVNLSLTATTDPSYPQAIKTSRPGVGVVVTDSQNNIISP
AGGTLPLSIPDDADSIARMNVYPVSTTGVPPETGRFEATATVRINFD
>gi|223713575|gb|ACDM01000023.1| GENE    87     91651  -     94101   1692    816 aa, chain - ## HITS:1  COG:ycbS KEGG:ns NR:ns ## COG: ycbS COG3188 # Protein_GI_number: 16128907 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     816      50     866     866    1575   99.0  0
MVADLSRFEKGRKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGV
NTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWD
EGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAE
WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVR
GIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPF
SSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRA
AMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYS
TSGFYTLSDTMYKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFY
LSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGISWNYSKSRGQPDADQVFALNFSLPLNL
LLPRSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKT
ANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIA
APGAENTRVANSTGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTK
GALVLAEFNAHAGARVLMKTSKQGIPLRFGAIATLDGVQANSGIIDDGSLYMAGLPAKGT
ISVRWGEAPDQICHINYELTEQQINSAITRMDAICR
>gi|223713575|gb|ACDM01000023.1| GENE    88     94273  -     94974    246    233 aa, chain - ## HITS:1  COG:ycbR KEGG:ns NR:ns ## COG: ycbR COG3121 # Protein_GI_number: 16128906 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     233       1     233     233     447  100.0  1e-126
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVP
YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
STTKRKEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL
TDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
>gi|223713575|gb|ACDM01000023.1| GENE    89     95057  -     95596    340    179 aa, chain - ## HITS:1  COG:ycbQ KEGG:ns NR:ns ## COG: ycbQ COG3539 # Protein_GI_number: 16128905 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     179       4     182     182     251  100.0  4e-67
MKKSVLTAFITVVCATSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVS
ATKLQTNGQVSGVQIDVPIELKDCDTTVTKNATFTFNGTADTTQITAFANQASSDAATNV
ALQMYMNDGTTAITPDTETGNILLQDGDQTLTFKVDYIATGKATSGNVNAVTNFHINYY
>gi|223713575|gb|ACDM01000023.1| GENE    90     95952  -     96527    587    191 aa, chain + ## HITS:1  COG:ZycbP KEGG:ns NR:ns ## COG: ZycbP COG0431 # Protein_GI_number: 15800798 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Escherichia coli O157:H7 EDL933 # 1     191       1     191     191     353   97.0  8e-98
MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTF
TEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYA
LKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTRLDTALETFWQALHRRDVQVP
DLLSLRGNAHA
>gi|223713575|gb|ACDM01000023.1| GENE    91     96520  -     97479   1031    319 aa, chain + ## HITS:1  COG:ssuA KEGG:ns NR:ns ## COG: ssuA COG0715 # Protein_GI_number: 16128903 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Escherichia coli K12 # 1     319      15     333     333     608  100.0  1e-174
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISW
VEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSP
IKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAW
AIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPK
KVDIRQRIWQPTQLEGKQL
>gi|223713575|gb|ACDM01000023.1| GENE    92     97476  -     98621   1228    381 aa, chain + ## HITS:1  COG:ycbN KEGG:ns NR:ns ## COG: ycbN COG2141 # Protein_GI_number: 16128902 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     381       1     381     381     757  100.0  0
MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWL
VAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDG
VFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSS
DVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW
QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGG
AGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQ
PLNPQGEAVANDFIPRKVAQS
>gi|223713575|gb|ACDM01000023.1| GENE    93     98632  -     99423    750    263 aa, chain + ## HITS:1  COG:ssuC KEGG:ns NR:ns ## COG: ssuC COG0600 # Protein_GI_number: 16128901 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1     263      16     278     278     422  100.0  1e-118
MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQ
HLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWF
GIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPS
IMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV
SAQLLERLWLRWNPAYHLKEATV
>gi|223713575|gb|ACDM01000023.1| GENE    94     99420  -    100187    218    255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 12     255       9     284     309 88  26 2e-16
MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL
ETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGLKGQWRDAARRALAAV
GLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ
EHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPRPRRLGSVRLAELEAEVLQR
VMQRGESETRLRKQG
>gi|223713575|gb|ACDM01000023.1| GENE    95    100230  -    102842   3020    870 aa, chain - ## HITS:1  COG:pepN KEGG:ns NR:ns ## COG: pepN COG0308 # Protein_GI_number: 16128899 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Escherichia coli K12 # 1     870       1     870     870    1759  100.0  0
MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLK
LVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQC
EAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPF
PKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEER
FGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYF
HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPM
AHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDD
FVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQP
LHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPV
KLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFR
AVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIY
NANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAA
VAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPN
RIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKR
QEKMRAALEQLKGLENLSGDLYEKITKALA
>gi|223713575|gb|ACDM01000023.1| GENE    96    103060  -    104310   1192    416 aa, chain + ## HITS:1  COG:pncB KEGG:ns NR:ns ## COG: pncB COG1488 # Protein_GI_number: 16128898 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Escherichia coli K12 # 17     416       1     400     400     823  100.0  0
MFIVLNAPVRGRYCAPMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
DLLGIYADAIREQVQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSNDN
GKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSALTAGL
DMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQAHEWFQ
AHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASRYQGLRHDS
GDPVEWGEKAIAHYEKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQLSFGIGTRLTC
DIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPHIKKAS
>gi|223713575|gb|ACDM01000023.1| GENE    97    104316  -    104585     85     89 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MPAFESRRVRTHPRTVTSLSTATRPWSTSATGTTLIIFSLLIVGKNKHLSTRKWGDTYVT
WHLQSDKQNSQMQRKISELKVKKGSRLAP
>gi|223713575|gb|ACDM01000023.1| GENE    98    104479  -    105879   1695    466 aa, chain + ## HITS:1  COG:asnS KEGG:ns NR:ns ## COG: asnS COG0017 # Protein_GI_number: 16128897 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Escherichia coli K12 # 1     466       1     466     466     959  100.0  0
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPN
YNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEY
LREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVS
TLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNT
SRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRL
ERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYP
KDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWY
RDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
>gi|223713575|gb|ACDM01000023.1| GENE    99    106481  -    107569   1370    362 aa, chain + ## HITS:1  COG:ompF KEGG:ns NR:ns ## COG: ompF COG3203 # Protein_GI_number: 16128896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     362       1     362     362     628  100.0  1e-180
MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDM
TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDY
GRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYL
GKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGL
KYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKS
KAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVY
QF
>gi|223713575|gb|ACDM01000023.1| GENE   100    107754  -    108944   1492    396 aa, chain + ## HITS:1  COG:aspC KEGG:ns NR:ns ## COG: aspC COG1448 # Protein_GI_number: 16128895 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1     396       1     396     396     812  100.0  0
MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE
TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV
KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC
CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN
DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR
LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
>gi|223713575|gb|ACDM01000023.1| GENE   101    109166  -    109813    569    215 aa, chain - ## HITS:1  COG:ycbL KEGG:ns NR:ns ## COG: ycbL COG0491 # Protein_GI_number: 16128894 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Escherichia coli K12 # 1     215       1     215     215     448  100.0  1e-126
MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDDSGLTLMQILLTHGHLD
HVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGDTISIG
NVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQLISSIKDKLL
PLGDDVIFIPGHGPLSTLGYERLHNPFLQDEMPVW
>gi|223713575|gb|ACDM01000023.1| GENE   102    109840  -    110388    424    182 aa, chain - ## HITS:1  COG:ECs1009 KEGG:ns NR:ns ## COG: ECs1009 COG3108 # Protein_GI_number: 15830263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     182       1     182     182     361  100.0  1e-100
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRG
YIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNEL
RARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPAR
HW
>gi|223713575|gb|ACDM01000023.1| GENE   103    110569  -    112416   1329    615 aa, chain - ## HITS:1  COG:ycbB KEGG:ns NR:ns ## COG: ycbB COG2989 # Protein_GI_number: 16128892 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     615       1     615     615    1194   99.0  0
MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM
AGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQL
AEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKP
YALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGK
ATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMD
KQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
LNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVV
VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLP
FRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANM
LLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
RSSSQIVSKAEQLIR
>gi|223713575|gb|ACDM01000023.1| GENE   104    112677  -    117137   6044   1486 aa, chain - ## HITS:1  COG:mukB KEGG:ns NR:ns ## COG: mukB COG3096 # Protein_GI_number: 16128891 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1    1486       1    1486    1486    2526   99.0  0
MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP
FAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFD
LGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQ
QLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDEL
QIRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAI
AALNRAKELCHLPDLTADCAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQ
LVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLA
DFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR
APVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEI
ERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQV
TEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGR
AARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQ
LNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRE
RLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFAL
TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQV
LASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEK
ALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAY
LSADDLRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQ
GLQNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM
VVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP
EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS
>gi|223713575|gb|ACDM01000023.1| GENE   105    117137  -    117841    805    234 aa, chain - ## HITS:1  COG:ECs1006 KEGG:ns NR:ns ## COG: ECs1006 COG3095 # Protein_GI_number: 15830260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli O157:H7 # 1     234       1     234     234     444   99.0  1e-124
MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNHAFLMDFQEYLEEFYAR
YNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPERLANEGIFTQQEL
YDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRI
TESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQLNDETEENQPDSGEEE
>gi|223713575|gb|ACDM01000023.1| GENE   106    117822  -    119144   1608    440 aa, chain - ## HITS:1  COG:mukF KEGG:ns NR:ns ## COG: mukF COG3006 # Protein_GI_number: 16128889 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1     440       1     440     440     832  100.0  0
MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS
DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF
STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDE
QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT
MTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQR
LRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLAA
IIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPA
KWQPINDYGAKVQAHVIDKY
>gi|223713575|gb|ACDM01000023.1| GENE   107    119141  -    119926    700    261 aa, chain - ## HITS:1  COG:smtA KEGG:ns NR:ns ## COG: smtA COG0500 # Protein_GI_number: 16128888 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     261       1     261     261     539  100.0  1e-153
MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAI
KMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA
VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTL
SPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEP
YITLGRYIHVTARKPQSKDKV
>gi|223713575|gb|ACDM01000023.1| GENE   108    120062  -    120841    656    259 aa, chain + ## HITS:1  COG:ECs1003 KEGG:ns NR:ns ## COG: ECs1003 COG1434 # Protein_GI_number: 15830257 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     259       1     259     259     452  100.0  1e-127
MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVAD
RLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENP
GSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAP
FLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE
TLGRIWQWLKGSSGEPRQE
>gi|223713575|gb|ACDM01000023.1| GENE   109    120818  -    121711    716    297 aa, chain - ## HITS:1  COG:no KEGG:JW0902 NR:ns ## KEGG: JW0902 # Name: ycbJ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     297       1     297     297     588  100.0  1e-166
MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWK
TTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEA
LLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRE
CLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSL
AEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA
>gi|223713575|gb|ACDM01000023.1| GENE   110    121865  -    122611    788    248 aa, chain - ## HITS:1  COG:kdsB KEGG:ns NR:ns ## COG: kdsB COG1212 # Protein_GI_number: 16128885 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Escherichia coli K12 # 1     248       1     248     248     488  100.0  1e-138
MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEA
AGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ
VGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLR
HLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL
ERVRAEMR
>gi|223713575|gb|ACDM01000023.1| GENE   111    122608  -    122790    184     60 aa, chain - ## HITS:1  COG:ECs1000 KEGG:ns NR:ns ## COG: ECs1000 COG2835 # Protein_GI_number: 15830254 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      60       1      60      60     119  100.0  2e-27
MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEARVLTADESKS
>gi|223713575|gb|ACDM01000023.1| GENE   112    122842  -    124074    742    410 aa, chain - ## HITS:1  COG:ycaQ KEGG:ns NR:ns ## COG: ycaQ COG3214 # Protein_GI_number: 16128883 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     410       1     410     410     822  100.0  0
MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVL
FSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQ
EHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRN
FQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAA
WREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKR
AEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEG
IKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA
>gi|223713575|gb|ACDM01000023.1| GENE   113    124111  -    125097    658    328 aa, chain - ## HITS:1  COG:lpxK KEGG:ns NR:ns ## COG: lpxK COG1663 # Protein_GI_number: 16128882 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Escherichia coli K12 # 1     328       1     328     328     649  100.0  0
MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNG
KTPVVVWLVEQLQQRGIRVGVVSRGYGGKAESYPLLLSADTTTAQAGDEPVLIYQRTDAP
VAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVEIVVIDGVRRFGNGWWLPAGP
MRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNLRTGTRCDVAQLEHVVAMAGIGH
PPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALVSAGQTLVMTEKDAVKCRAFAEENW
WYLPVDAQLSGDEPAKLLTQLTLLASGN
>gi|223713575|gb|ACDM01000023.1| GENE   114    125094  -    126842    242    582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 359     568      17     229     245 97  32 3e-19
MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTD
RSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS
TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSI
AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQ
GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKS
LTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALR
NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVA
LVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL
LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS
TIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQFGQ
>gi|223713575|gb|ACDM01000023.1| GENE   115    126879  -    129143    673    754 aa, chain - ## HITS:1  COG:ycaI_1 KEGG:ns NR:ns ## COG: ycaI_1 COG0658 # Protein_GI_number: 16128880 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Escherichia coli K12 # 1     428      27     454     454     785  100.0  0
MKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLFACVLAFIPVKTVRYIALTLLFFVWG
ILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQGRRIFPASGLVMYGEYLP
QAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPLTGRFLQASVIEPNCSLRAQY
LASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIMRDTGTAHLMAISGLHIAFAALLAA
GLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTGMQPPALRTMVALATWGMLKLSGRQ
WSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAALIFWYQWFPCPEWQLPPVLRAVVS
LIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLIL
EQGLWFLADRSLALLFWGLKSLPEGWINIAECWQWLSFSPWFLLVVWRLNAWRTLPAMCV
AGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLII
PWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQG
LRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQ
VPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQGQT
TVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG
>gi|223713575|gb|ACDM01000023.1| GENE   116    129351  -    129635    353     94 aa, chain - ## HITS:1  COG:ECs0995 KEGG:ns NR:ns ## COG: ECs0995 COG0776 # Protein_GI_number: 15830249 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Escherichia coli O157:H7 # 1      94       1      94      94     174  100.0  4e-44
MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT
GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
>gi|223713575|gb|ACDM01000023.1| GENE   117    129755  -    129853    150     32 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238903721|ref|ZP_04649193.1| ribosomal protein S1 [Escherichia coli BL21(DE3)] # 4      32     542     570     570 62  100 0.0
MQTSPTTQWLKLSKQLKASNSLTLRDFYSEVC
>gi|223713575|gb|ACDM01000023.1| GENE   118    129795  -    131468   2807    557 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 EDL933] # 1     557       1     557     557 1085  100 0.0
MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGEL
EIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGF
TVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSA
ERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE
ITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGV
EGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAET
HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL
QVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRA
SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDA
NFSNNAMAEAFKAAKGE
>gi|223713575|gb|ACDM01000023.1| GENE   119    131579  -    132262    267    227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 7     223      36     286     863 107  30 4e-22
MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDAL
VPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAF
RELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKE
RDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKLALA
>gi|223713575|gb|ACDM01000023.1| GENE   120    132435  -    133199    869    254 aa, chain - ## HITS:1  COG:ECs0992 KEGG:ns NR:ns ## COG: ECs0992 COG0501 # Protein_GI_number: 15830246 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli O157:H7 # 1     254       9     262     262     441   99.0  1e-124
MKNTKLLLAIATSAALLTGCQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEM
DSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYMTSDVNAWAMANGCVRVYSGLM
DMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDIA
EGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPST
ERAQHIRDRISSGK
>gi|223713575|gb|ACDM01000023.1| GENE   121    133368  -    134651   1359    427 aa, chain - ## HITS:1  COG:ECs0991 KEGG:ns NR:ns ## COG: ECs0991 COG0128 # Protein_GI_number: 15830245 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     427       1     427     427     846  100.0  0
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTAL
GVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPR
MKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTA
PLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE
GDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGE
LNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVE
EGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQL
ARISQAA
>gi|223713575|gb|ACDM01000023.1| GENE   122    134722  -    135810   1066    362 aa, chain - ## HITS:1  COG:serC KEGG:ns NR:ns ## COG: serC COG1932 # Protein_GI_number: 16128874 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Escherichia coli K12 # 1     362       1     362     362     750  100.0  0
MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL
LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD
AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL
SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT
PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV
PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR
HG
>gi|223713575|gb|ACDM01000023.1| GENE   123    136009  -    136701    675    230 aa, chain - ## HITS:1  COG:ycaP KEGG:ns NR:ns ## COG: ycaP COG2323 # Protein_GI_number: 16128873 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     230       1     230     230     463  100.0  1e-130
MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLG
SAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAW
SKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDC
TQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT
>gi|223713575|gb|ACDM01000023.1| GENE   124    136831  -    138591   1946    586 aa, chain + ## HITS:1  COG:ycaO KEGG:ns NR:ns ## COG: ycaO COG1944 # Protein_GI_number: 16128872 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     586       4     589     589    1187  100.0  0
MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNG
KGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEG
LLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVS
NGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAE
GFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDL
DVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLM
AIFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGS
EWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLEQ
ALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEAA
SAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKAAFWAK
>gi|223713575|gb|ACDM01000023.1| GENE   125    138997  -    139854    673    285 aa, chain + ## HITS:1  COG:ECs0987 KEGG:ns NR:ns ## COG: ECs0987 COG2116 # Protein_GI_number: 15830241 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli O157:H7 # 1     285       1     285     285     535  100.0  1e-152
MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTG
TMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFG
NLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVW
MSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPE
NFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRENDHH
>gi|223713575|gb|ACDM01000023.1| GENE   126    139909  -    142191   2558    760 aa, chain + ## HITS:1  COG:pflB KEGG:ns NR:ns ## COG: pflB COG1882 # Protein_GI_number: 16128870 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1     760       1     760     760    1565  100.0  0
MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVME
GVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIE
GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIG
DYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK
YGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQ
EAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNT
LYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC
VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERM
DHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI
KYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIP
TQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYA
KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM
ENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM
>gi|223713575|gb|ACDM01000023.1| GENE   127    142383  -    143123    698    246 aa, chain + ## HITS:1  COG:ECs0985 KEGG:ns NR:ns ## COG: ECs0985 COG1180 # Protein_GI_number: 15830239 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli O157:H7 # 1     246       1     246     246     519  100.0  1e-147
MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEV
VTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDEL
LEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDS
AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY
GHKVMF
>gi|223713575|gb|ACDM01000023.1| GENE   128    143205  -    143795    424    196 aa, chain - ## HITS:1  COG:ycaK KEGG:ns NR:ns ## COG: ycaK COG2249 # Protein_GI_number: 16128868 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli K12 # 1     196       1     196     196     402  100.0  1e-112
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWK
NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
YYQSLLSQVRDMVDAL
>gi|223713575|gb|ACDM01000023.1| GENE   129    143895  -    144803    404    302 aa, chain + ## HITS:1  COG:ycaN KEGG:ns NR:ns ## COG: ycaN COG0583 # Protein_GI_number: 16128867 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     302       1     302     302     632  100.0  0
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT
EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYP
DIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKP
RHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
YEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQICQSQRHR
PQ
>gi|223713575|gb|ACDM01000023.1| GENE   130    144804  -    146234   1394    476 aa, chain - ## HITS:1  COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     476      65     540     540     887  100.0  0
MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVG
QLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDG
SLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPA
ITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGML
CLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIAN
TLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPT
LGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGI
WCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
>gi|223713575|gb|ACDM01000023.1| GENE   131    146444  -    147592   1052    382 aa, chain - ## HITS:1  COG:ycaD KEGG:ns NR:ns ## COG: ycaD COG0477 # Protein_GI_number: 16128865 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     382       1     382     382     639  100.0  0
MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLL
TGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALM
CSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRV
LNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFW
MAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGF
TLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASV
SFIYLLMLLRNAGHTPKPVAHV
>gi|223713575|gb|ACDM01000023.1| GENE   132    147906  -    148532    619    208 aa, chain + ## HITS:1  COG:ycaC KEGG:ns NR:ns ## COG: ycaC COG1335 # Protein_GI_number: 16128864 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1     208       1     208     208     429  100.0  1e-120
MTKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTSF
ETGPNGPLVPELKAQFPDTPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVA
FPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRLSQAGAQLMTWFGVACELHRDWRNDI
EGLATLFSNHIPDYRNLMTSYDTLTKQK
>gi|223713575|gb|ACDM01000023.1| GENE   133    148567  -    149430    888    287 aa, chain - ## HITS:1  COG:dmsC KEGG:ns NR:ns ## COG: dmsC COG3302 # Protein_GI_number: 16128863 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Escherichia coli K12 # 1     287       1     287     287     436   99.0  1e-122
MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFI
ASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLI
VTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWA
MRLLPAISVLALVVTGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCL
WIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
>gi|223713575|gb|ACDM01000023.1| GENE   134    149432  -    150049    647    205 aa, chain - ## HITS:1  COG:dmsB KEGG:ns NR:ns ## COG: dmsB COG0437 # Protein_GI_number: 16128862 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1     205       1     205     205     414  100.0  1e-116
MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFA
YYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETK
GHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKHGDLAAVAPLPRAHFTKPN
IVIKPNANSRPTGDTTGYLANPKEV
>gi|223713575|gb|ACDM01000023.1| GENE   135    150060  -    152504   2581    814 aa, chain - ## HITS:1  COG:dmsA KEGG:ns NR:ns ## COG: dmsA COG0243 # Protein_GI_number: 16128861 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 30     814       1     785     785    1635  100.0  0
MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIW
SACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRL
KYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSW
PPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGN
NPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGL
AYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQIT
GVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGA
REGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWN
YAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFAL
DASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQS
REAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADI
AATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAAC
RQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKR
VDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV
>gi|223713575|gb|ACDM01000023.1| GENE   136    152743  -    154035   1501    430 aa, chain - ## HITS:1  COG:ECs0978 KEGG:ns NR:ns ## COG: ECs0978 COG0172 # Protein_GI_number: 15830232 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1     430       1     430     430     865  100.0  0
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQ
AKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDN
VEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFM
LDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEV
PLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED
SMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCS
NVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLR
PYMNGLEYIG
>gi|223713575|gb|ACDM01000023.1| GENE   137    154126  -    155469   1085    447 aa, chain - ## HITS:1  COG:ECs0977 KEGG:ns NR:ns ## COG: ECs0977 COG2256 # Protein_GI_number: 15830231 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1     447       1     447     447     872  100.0  0
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG
TGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED
KTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTN
RGLEGKIGEKLAWLAEQDQNSPIKRYR
>gi|223713575|gb|ACDM01000023.1| GENE   138    155480  -    156091    669    203 aa, chain - ## HITS:1  COG:ECs0976 KEGG:ns NR:ns ## COG: ECs0976 COG2834 # Protein_GI_number: 15830230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Escherichia coli O157:H7 # 1     203       2     204     204     378  100.0  1e-105
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDL
WVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSS
DWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQN
GAVDAAKFTFTPPQGVTVDDQRK
>gi|223713575|gb|ACDM01000023.1| GENE   139    156250  -    160239   3874   1329 aa, chain - ## HITS:1  COG:ftsK KEGG:ns NR:ns ## COG: ftsK COG1674 # Protein_GI_number: 16128857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Escherichia coli K12 # 1    1329       1    1329    1329    2115   99.0  0
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPI
HNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVL
ALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTG
WSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARIL
RGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRAT
QPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAW
QPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPY
YAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE
PVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVP
PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIR
VPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQ
QRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMK
ALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQ
PQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL
PSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPG
VKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDN
PSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFI
MIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNE
KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIAR
LAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLG
MGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFD
GAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNR
EVLAPPPFD
>gi|223713575|gb|ACDM01000023.1| GENE   140    160374  -    160868    584    164 aa, chain - ## HITS:1  COG:ECs0974 KEGG:ns NR:ns ## COG: ECs0974 COG1522 # Protein_GI_number: 15830228 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     164       1     164     164     312  100.0  2e-85
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG
YTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTR
VPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>gi|223713575|gb|ACDM01000023.1| GENE   141    161413  -    162378    733    321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 10     317       5     306     306 286  49 3e-76
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL
TGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYL
GLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG
FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL
FVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSA
GTGCMAALDAERYLDGLADAK
>gi|223713575|gb|ACDM01000023.1| GENE   142    162501  -    164267    170    588 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 369     570     150     351     398 70  29 6e-11
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPRE
ALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAG
SWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFM
ALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTM
EVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEF
FQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEELFITSP
EGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPES
WRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVG
DQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMV
THQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>gi|223713575|gb|ACDM01000023.1| GENE   143    164268  -    165989   1630    573 aa, chain + ## HITS:1  COG:cydC KEGG:ns NR:ns ## COG: cydC COG4987 # Protein_GI_number: 16128853 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components # Organism: Escherichia coli K12 # 1     573       1     573     573    1050   99.0  0
MHALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYM
LPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELL
NRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPL
FYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQ
SELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGA
FQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIS
LQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVP
QRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGEL
RRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQ
QIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>gi|223713575|gb|ACDM01000023.1| GENE   144    166031  -    166735    400    234 aa, chain + ## HITS:1  COG:aat KEGG:ns NR:ns ## COG: aat COG2360 # Protein_GI_number: 16128852 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Leu/Phe-tRNA-protein transferase # Organism: Escherichia coli K12 # 1     234       1     234     234     493  100.0  1e-139
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWS
PDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAY
HRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGH
GGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>gi|223713575|gb|ACDM01000023.1| GENE   145    167020  -    167238    257     72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1      70       1      70      72 103  65 5e-21
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY
DLSKGRIVFRSR
>gi|223713575|gb|ACDM01000023.1| GENE   146    167730  -    168575    426    281 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_3414 NR:ns ## KEGG: ECUMN_3414 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     280       1     280     282     542   94.0  1e-153
MMSDITISRPELVNGHTDVICSTSIRHILAVRKSALLQIDTLIRQLAEISVLTESIGGKT
ARDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDAQARDTWYRS
LEYDNFPEISEANIWSTFEQLHQNKDDVFERGVINVFRVLSWNYKTNSPCKFGSKIIVNN
LVRWDRWGIHLNSGQQTDRLADLERMLHLFSGKPVPDNRENIIIHLDDHIRSVQGKACYE
DEMFSIRYFKKGSAHITFRKPELVDRLNDIIARHYPGMLAV
>gi|223713575|gb|ACDM01000023.1| GENE   147    168657  -    168854    199     65 aa, chain - ## HITS:1  COG:no KEGG:EC55989_4897 NR:ns ## KEGG: EC55989_4897 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      65     125     189     189     121   90.0  1e-26
MKSLTTETALDILIAWMQDNIDCESGIIFDTDEDKTDSAALLPCIEQAREDIRTLRQQQL
LQQNR
>gi|223713575|gb|ACDM01000023.1| GENE   148    168871  -    169122    181     83 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_2241 NR:ns ## KEGG: EcSMS35_2241 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 27      83     106     162     162     118  100.0  5e-26
MSRIITTTVYTLHELSSTVREKARDWYLLRTDAWSYPVLRLKRLGLSRTFRRLVVTLTRR
YGVSLIHLDAGAECLPGFPTFDW
>gi|223713575|gb|ACDM01000023.1| GENE   149    169141  -    169362    317     73 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_2245 NR:ns ## KEGG: EcSMS35_2245 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      73       1      73      73     148   97.0  6e-35
MKIITRGEAMRIHQQHPAPRLFPFCTGKYRWHGSAETYTGREVQDIPGVLAVFAERRKDS
FGPYVRLMNVTLN
>gi|223713575|gb|ACDM01000023.1| GENE   150    169425  -    169901    427    158 aa, chain - ## HITS:1  COG:ECs2803 KEGG:ns NR:ns ## COG: ECs2803 COG2003 # Protein_GI_number: 15832057 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1     158       1     158     158     302   99.0  2e-82
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD
RLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
>gi|223713575|gb|ACDM01000023.1| GENE   151    169917  -    170390    518    157 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C2275 NR:ns ## KEGG: UTI89_C2275 # Name: yafX2 # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     157      25     181     181     322   94.0  2e-87
MKTLSQNTTSSACAPETDLQQLVATLVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRL
CEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNVMNGNRAEMSPEAAGIAACLMAY
SHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID
>gi|223713575|gb|ACDM01000023.1| GENE   152    170732  -    171550    648    272 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_4894 NR:ns ## KEGG: EcE24377A_4894 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     272       1     272     272     520   97.0  1e-146
MRLASRFGYTNQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRYAYIPTITVLESLQQEG
FQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSHDGTSSYQMLPGYFR
FVCQNGCVCGQSLGEVRVPHRGNVVDRVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPERQ
ELAQAALTYRYGDEHRPVTTADILTPRRREDYGKDLWSTYQTIQENMLKGGISGRSAKGK
RIHTRAIHNIDTDIKLNRALWVMAEMLLESLR
>gi|223713575|gb|ACDM01000023.1| GENE   153    171988  -    172470    340    160 aa, chain - ## HITS:1  COG:no KEGG:ECO103_3759 NR:ns ## KEGG: ECO103_3759 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     160      66     225     225     272   80.0  3e-72
MKRLHTLMFFLVFLFIGVSPDTNAATVNQTLKCDSKAWSGQPGACPTTYELYEGDATYRV
AIDKTLNPVGLDGMFGKDGYMDGPGGGAYPVNINGTTWVEGGGCKAHACGWNFIITLYNP
KTHKVVGYYYNIDPGYLIWFGEIGVHEFAYLVKDYVNKTN
>gi|223713575|gb|ACDM01000023.1| GENE   154    172913  -    173455    388    180 aa, chain - ## HITS:1  COG:no KEGG:SDY_1017 NR:ns ## KEGG: SDY_1017 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1     155       1     155     155     287   87.0  1e-76
MKFIVKALICLAIMLSFTANAAEYKEYPQGEIAYYKYLPKNGWKLPEGYTVEDFTAAIYK
GRIRNNFPWTEQFIVRGNGVFLLANKVNKTWHILPVDYQNLNFGRLTTHYQHVNKGDGCY
FYILNGLEEDAKPILRIEEKCIDMKMYKKMVAEQKEREQKANQWLQQQILAEHCRRYGNC
>gi|223713575|gb|ACDM01000023.1| GENE   155    173590  -    174063    184    157 aa, chain - ## HITS:1  COG:ECs1399 KEGG:ns NR:ns ## COG: ECs1399 COG1752 # Protein_GI_number: 15830653 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 12     157     211     356     356     275   92.0  2e-74
MKAGLQRVPLLFRPREVQGTMYGDGGMGGWRNRQGNTPVTPLVDAGCNMVIVTHLSDGSL
WDRRAFPDTTILEIRPRKRLKETGDEGKSGGLLSFTSAHTDAWRQQGYEDTMLTMEHIRK
PLAARQALTRSEAVLQKSLEITEGADSALRNAMARIK
>gi|223713575|gb|ACDM01000023.1| GENE   156    174017  -    174538    411    173 aa, chain - ## HITS:1  COG:flu KEGG:ns NR:ns ## COG: flu COG3468 # Protein_GI_number: 16129941 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1     169      53     221    1091     231   82.0  5e-61
MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAIALSLAAVTSVPVVAADTVVQAG
ETVSGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL
QRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGKQWVHEGGIATGAPVVPSP
>gi|223713575|gb|ACDM01000023.1| GENE   157    174910  -    175284    244    124 aa, chain - ## HITS:1  COG:yeeP KEGG:ns NR:ns ## COG: yeeP COG3596 # Protein_GI_number: 16129940 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1     124     113     236     236     227   98.0  4e-60
GIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLM
TRLQDELRTESVRAQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWN
WIFF
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:52:41 2011
 Seq name: gi|223713574|gb|ACDM01000024.1| Escherichia sp. 4_1_40B cont1.24, whole genome shotgun sequence 
 Length of sequence - 38025 bp
 Number of predicted genes - 31, with homology - 31
 Number of transcription units - 17, operones - 5 average op.length -  3.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     2 Tu  1     .       -    CDS       1345 -      2079    109  ## EcE24377A_2238 hypothetical protein
     3     3 Op  1     .       +    CDS       3319 -      3495    174  ## E2348C_1096 hypothetical protein
     4     3 Op  2  27/0.000   +    CDS       3535 -      5973   2545  ## COG0286 Type I restriction-modification system methyltransferase subunit
     5     3 Op  3     .       +    CDS       5973 -      7313    568  ## COG0732 Restriction endonuclease S subunits
     6     3 Op  4     .       +    CDS       7325 -      7981    488  ## E2348C_1093 hypothetical protein
     7     3 Op  5     .       +    CDS       7978 -      9045    963  ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
     8     3 Op  6   8/0.000   +    CDS       9064 -     12159   2993  ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
     9     3 Op  7     .       +    CDS      12159 -     12875    258  ## COG1451 Predicted metal-dependent hydrolase
                               +    Term     13010 -     13055    4.9 
    10     4 Tu  1     .       -    CDS      13450 -     15378    296  ## COG4584 Transposase and inactivated derivatives
                               -    Term     15707 -     15738    0.1 
    11     5 Op  1   1/0.667   -    CDS      15776 -     17971   1689  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
    12     5 Op  2   3/0.333   -    CDS      17977 -     19314    746  ## COG3486 Lysine/ornithine N-monooxygenase
    13     5 Op  3   5/0.000   -    CDS      19311 -     21053   1499  ## COG4264 Siderophore synthetase component
    14     5 Op  4   5/0.000   -    CDS      21053 -     22000    242  ## PROTEIN SUPPORTED gi|229250525|ref|ZP_04374554.1| acetyltransferase, ribosomal protein N-acetylase
    15     5 Op  5     .       -    CDS      22001 -     23725   1364  ## COG4264 Siderophore synthetase component
                               -    Prom     23809 -     23868    6.9 
                               +    Prom     23752 -     23811    7.1 
    16     6 Tu  1     .       +    CDS      23861 -     25054    596  ## COG0477 Permeases of the major facilitator superfamily
                               +    Prom     25404 -     25463    2.3 
    17     7 Tu  1     .       +    CDS      25543 -     26430    513  ## COG2801 Transposase and inactivated derivatives
                               +    Term     26517 -     26558   -1.0 
                               -    Term     26432 -     26467   -0.9 
    18     8 Tu  1     .       -    CDS      26470 -     26769     95  ## COG2801 Transposase and inactivated derivatives
                               -    Prom     26897 -     26956    5.6 
    19     9 Op  1     .       -    CDS      27128 -     27769    385  ## ECSP_1312 hypothetical protein
    20     9 Op  2     .       -    CDS      27793 -     27996    115  ## ECH74115_1387 LdaB
    21    10 Op  1   8/0.000   -    CDS      28141 -     28779    476  ## COG1475 Predicted transcriptional regulators
    22    10 Op  2     .       -    CDS      28764 -     29996    573  ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase
                               -    Prom     30067 -     30126    4.7 
                               +    Prom     29982 -     30041    4.0 
    23    11 Tu  1     .       +    CDS      30224 -     30352     76  ## ECH74115_1384 hypothetical protein
                               -    Term     30266 -     30318    0.9 
    24    12 Tu  1     .       -    CDS      30497 -     33178    840  ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits
                               -    Prom     33226 -     33285    3.1 
    25    13 Tu  1     .       -    CDS      33419 -     34153    422  ## COG2831 Hemolysin activation/secretion protein
    26    14 Tu  1     .       -    CDS      34568 -     34717     81  ## gi|300946335|ref|ZP_07160618.1| conserved hypothetical protein
                               -    Prom     34812 -     34871    4.3 
                               +    Prom     34983 -     35042    2.4 
    27    15 Tu  1     .       +    CDS      35139 -     35330    214  ## ECH74115_1377 hypothetical protein
                               +    Term     35520 -     35556   -0.9 
                               -    Term     35175 -     35213   -0.2 
    28    16 Op  1     .       -    CDS      35383 -     35616    245  ## EC55989_3343 hypothetical protein
                               -    Prom     35649 -     35708    4.4 
    29    16 Op  2     .       -    CDS      35712 -     36335    529  ## EC55989_3344 hypothetical protein
                               -    Prom     36356 -     36415    2.3 
    30    16 Op  3     .       -    CDS      36424 -     36933     54  ## ECSP_1300 hypothetical protein
                               -    Prom     37007 -     37066    3.1 
                               +    Prom     37550 -     37609    3.0 
    31    17 Tu  1     .       +    CDS      37664 -     37849    103  ## ECH74115_1372 hypothetical protein
Predicted protein(s)
>gi|223713574|gb|ACDM01000024.1| GENE     1       277  -       795    180    172 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256023430|ref|ZP_05437295.1| ## NR: gi|256023430|ref|ZP_05437295.1| hypothetical protein E4_08653 [Escherichia sp. 4_1_40B] # 1     172       1     172     172     295  100.0  5e-79
MTILEEMEAEAWHILTTIYTYQRLMEGLTNSSTRYELANQLVALNALLEMLVIRLARLAD
KRKDVRSVSMFLKRGSYSASPEAVKLAAEKFLALAEPVLKIRHEQIAHMKPGTLSSFEPR
ELPNEALRATEALIDLIDIARDHPQSYTYRVGSQEPAINLRASVETSELVKI
>gi|223713574|gb|ACDM01000024.1| GENE     2      1345  -      2079    109    244 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_2238 NR:ns ## KEGG: EcE24377A_2238 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     178      78     255     459     304   87.0  2e-81
MDRVILDDVLYSLSLRYRVNLSENVVEKFIESDSKEKVEHLRKEIARFIRFAKENFDLIR
GEFIVFVRRESSIKDSERANGILEDNSDTNFLFRYLPPNIARLYENRLSVQNIERLGNTN
KIRLLNRNVLTNEIMLKIKDCESTYTNGYMYQYINNAIDNDDGTISMEIVMGKHSGKKVM
NGGCREQKIVQFSFIIKTLLLILTKRIHAERPWAHIAHFMEKFFVNWIKGMKFRGLNSLL
TFHF
>gi|223713574|gb|ACDM01000024.1| GENE     3      3319  -      3495    174     58 aa, chain + ## HITS:1  COG:no KEGG:E2348C_1096 NR:ns ## KEGG: E2348C_1096 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 3      57       1      55      79      94   87.0  9e-19
MNMNEDEINRHIRQALSSAPRNQYTVELHLQMIKYADELEHITAKAFCEGIGLNTDLL
>gi|223713574|gb|ACDM01000024.1| GENE     4      3535  -      5973   2545    812 aa, chain + ## HITS:1  COG:HP1403_1 KEGG:ns NR:ns ## COG: HP1403_1 COG0286 # Protein_GI_number: 15646013 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori 26695 # 1     463       1     476     479     587   62.0  1e-167
MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMIVIPKGAS
FDDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADFNDEDKLGKGKEMIDRLSKLVG
IFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVIGITPDT
PQDATVYDPTCGSGSLLLKVNDEARRGLSIFGQEMDNATSALARMNMILHNNATAKIWQG
NTLSDPQWKEANGKLKAFDFAVANPPFSNKNWTNGLTPKKDPFERFGWGIPPEKNGDYAF
LLHIIKSLKSTGKGAVILPHGVLFRGNAEANIRENLIKQGYIKGVIGLPANLFYGTGIPA
CIIVIDKEHAHSRKGIFMIDASRGFIKDGNKNRLRSRDIHRIVDVFNHQRTVPGYSRMVP
SSEIAGNDYNLNIPRYIESGEPEDLHDLTAHLQGGIPARDVDALQDYWRVFPALRNVLFA
DDRPGYCRAQVNAQQVKPTILAHQEFKDFATRSLLPFKAWVKEASLEEIRKGDKPKALIH
DISEMLLAQYANSELLNKYSVYQILMDYWTDVMQDDVYAIMQDGWQAAAQIRELQPVKGK
DGKNIWKETHDFEFTKRRYKADVLPRSLVEIRCFPELLDALNRAQERSEEASRQLVEFIE
EQAGEEDLLAEAKNDKDKVTQKLVNARLAQLKKTTAGPDELAVLNRCLALIKAEASAKKA
LKAAQEALDRAVFKHYPTLDEAAIKTLVVQDKWLATLQAGIKAEIERITQQLASRVKELE
ERYAEPLLALEASVEALSEKVAEHLRAMGLEW
>gi|223713574|gb|ACDM01000024.1| GENE     5      5973  -      7313    568    446 aa, chain + ## HITS:1  COG:MJ0130m KEGG:ns NR:ns ## COG: MJ0130m COG0732 # Protein_GI_number: 15669898 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 22     445       8     423     425     137   29.0  4e-32
MVDLMVNEQRSSTAGKDVPAGYKLTEVGVIPEDWDCVPFGNLFKTNTKKKKVSDYELVSF
IGMQDVSEDAQLKNNTQLPFKEVKSGFTYFEKGDVLLAKITPCFENGKGCHTADLPTNVG
FGSTEFHVLRENEDSDSRFIYFWTTDKKFRASLESEMVGSAGHRRVPLVAIEKYLIPCPP
NLQEQSAIADSLSDINNFILALEKLIVKKQAIKTATMQRLLTGKTRLPQFALRKDGSAKG
YKKSELGEIPEDWVVTSIGQFTDCCAGGTPSTKISAYWGGTHPWMSSGELHLKQVYAVAD
YITDEGLVNSSTKYVPKNSVLVGLAGQGKTRGTVAINRIELCTNQSIAAIFPSKHHSTEF
LFYNLDSRYEELRSLSTGDGGRGGLNLTIIRKLHLAFPPKEEQTAIATILSDMDKEIQTL
QQRLDKTRQLKQGMMQELLTGKTRLI
>gi|223713574|gb|ACDM01000024.1| GENE     6      7325  -      7981    488    218 aa, chain + ## HITS:1  COG:no KEGG:E2348C_1093 NR:ns ## KEGG: E2348C_1093 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1     218       1     218     218     456   99.0  1e-127
MAYDYSASLNPQKALIWRIVHRDNIPWILDNGLHCGNSLVQAENWINIGNPELIGKRAGH
PVPVGTGGTLHDYVPFYFTPFSPMLMNIHSGRGGIKRRPNEEIVILVSNLRNVAAHDVPF
VFTDSHAYYNWTNYYTSLNSLDQIDWPILQARDFRRDPDDPAKFERYQAEALIWQHCPIS
LLDGIICYSEEVRLQLEQWLFQRNLTMSVHTRAGWYFS
>gi|223713574|gb|ACDM01000024.1| GENE     7      7978  -      9045    963    355 aa, chain + ## HITS:1  COG:MT0066 KEGG:ns NR:ns ## COG: MT0066 COG2110 # Protein_GI_number: 15839437 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Mycobacterium tuberculosis CDC1551 # 1     351       1     349     352     257   40.0  3e-68
MITYTQGNLLDAPVEALVNTVNTVGVMGKGIALMFKERFPENMKVYALACKQKQVITGKM
FITETGELMGPRWIVNFPTKQHWRADSRMEWIEDGLQDLRRFLIEENVQSIAIPPLGAGN
GGLNWPDVRAQIESALGDLQDVDILIYQPTEKYQNVAKSTGVKKLTPARAAIAELVRRYW
VLGMECSLLEIQKLAWLLQRAIEQHQQDDILKLRFEAHYYGPYAPNLNHLLNALDGTYLK
AEKRIPDSQPLDAIWFNDQKKEHVNAYLNNEAREWLPALEQVSQLIDGFESPFGLELLAT
VDWLLSRGECQPTLDSVKEGLHQWPAGERWASRKLRLFDNNNLQFAINRVMEFHC
>gi|223713574|gb|ACDM01000024.1| GENE     8      9064  -     12159   2993   1031 aa, chain + ## HITS:1  COG:jhp1424 KEGG:ns NR:ns ## COG: jhp1424 COG0610 # Protein_GI_number: 15612489 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Helicobacter pylori J99 # 6    1031       2     991     991     903   47.0  0
MSTVGQRERATQQRLIQFFVEDLGYRHLSHRTGYTGNSNIDTNILSAWLKRRGVNDTLIT
RALRQLDSAAALGEGKKLYYANKEVYRLLRYGVKDKEGAGEQNQTVWLIDWANPQANDFA
IADEVTVKGEYCKRPDLVLYVNGIALGVIELKRSSVHVSEGIRQNLDNQKKTFIRDFFTT
MQLVMAGNDTQGLRYGTIETPEKYYLEWKEDNPGDYTHKLDFHLSRLCSKSRLLDIVHNY
IAFDVGVKKLCRHNQFFGVEAAKQHIARREGGIIWHTQGSGKSLTMVWLAKWIRENVPNS
RVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIATLNHPNPWLICSLVHKFGRRSEA
EDNAATDAFITELQQSLTKTFRAKGDLFVFVDECHRTQSGKLHNAMTAILPDALFIGFTG
TPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVLDLRYEARDIDQYLTSEKKVDDWFEAK
TRGLSNLARTQLKQKWGSMQKLLSSKSRLEQIVNDILLDMDTRPRLMDGRGNAMLVCSSI
YQACKVYEMFSQTELAGKVAIVTSYRPDAASIKGEETGEGLTEKLSKHATYRKMLADYFE
QSEEKAAARITEFEREVKQRFIEEPGQMRLLIVVDKLLTGFDAPSATYLYIDKTMTDHTL
FQAICRVNRLDGEDKEYGYIIDYKDLFRSLDKAITDYTTGAFDDYDRDDVAGLLKDRLEQ
AQLDLDSALEMVRSLCEPVKTPRSLQDYQHYFCGESGENQTSLNEKEALRLTFYQCVARL
LRAYASIANEMPEAGYTAEEVESIRAEVAEFEKLRYEIKLTSGDLLDMKRFEPAMRHLLD
MYVRADDSEVLMDFEELSLIELIVEKGLAATVALPDDIRNNQDAMAETIENNVRKTIVDE
NPVNPKYYGRMSQLLDELITLRRQNALNYQQYLERIRDLCKQVIRPEQTAGACYPATMDT
QAKRAFYDNFGHDEVLATRIDTTIRYTKRAEWIGDRFKEREIANALREETASYNIDIDEV
IALARQQKEYH
>gi|223713574|gb|ACDM01000024.1| GENE     9     12159  -     12875    258    238 aa, chain + ## HITS:1  COG:jhp1425 KEGG:ns NR:ns ## COG: jhp1425 COG1451 # Protein_GI_number: 15612490 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 4     223       6     224     235     161   37.0  8e-40
MPIMQIGSLHLLVNRKAIKNLHISVLPPDGKVRVSAPEHMTETAIRMAVASRFRWIRKQQ
QDFARQPRQSEREMVSGECHYLWGRRYRLLVIERHGRHEVKVAGNNKLQLYVQPGTRDEN
KALALNEFYRHELKQQVAKLLPEWQDRIGVPLTFWGIKKMKTFWGTCNTTTKRIWLNLEL
IKKPPECLEYILVHELVHLLERHHNARFRLHMDRFIPDWRERRDLLNNMPLAFEAWEY
>gi|223713574|gb|ACDM01000024.1| GENE    10     13450  -     15378    296    642 aa, chain - ## HITS:1  COG:AGl6 KEGG:ns NR:ns ## COG: AGl6 COG4584 # Protein_GI_number: 15890093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1     325     165     490     530     267   40.0  4e-71
MRQEHRAGEKLFIDFCGPTVPVINPDTGEIRRVAIFVAVMGASNYTYVEACEGQDMMSWL
NAHSRCLTFLGGVPKLLIPDNLRSAVKKADRYEPVINDSYQALAEHYGTVIIPARPRKPK
DKPKAENGVLIVERWLLARIRNETFHTLRALNARLRELLTDMNNRPMKGYGNQTRAERFR
MLDAPALSPLPLEPYEYTEYKAVKVGPDYHVEYARHWYSVPHELVGQRLSLKVGQSVVQL
WHKGQCVAQHPRSTHEYKHTTNPLHMPERHRRHGTWTPERLIEQGNRTGPSTGRVVESML
KAKPHPELAYRAVLGLRHFRKNTARNGWKRPVTLPCTITPRTDALSTICCVIIGITLSFR
YPARANNIRHMLQSMKTCVVLATTTDRRNNRMSDNLLNKLTQLKLPAMAGSLIRQRETPQ
TYDELSFEERLTLLVDDELLSRENSRVARLRKNACLKYQATPEGLRYPASRGLRAEQMRE
LLNGHYIIHRKNLLITGPTGCGKSWIANALGEQACRQKYSVRYCRTGRLLEQLAQGRVDG
SWLKYLKQLQKIQVLILDDLGLEQLSNAQCNDLLEITEDRYGQSSTIVVSQFPVDKWHGL
MENPTTADAILDRLVHNSHRVVLQGESLRKNPPTVESSEKTS
>gi|223713574|gb|ACDM01000024.1| GENE    11     15776  -     17971   1689    731 aa, chain - ## HITS:1  COG:YPO0994 KEGG:ns NR:ns ## COG: YPO0994 COG1629 # Protein_GI_number: 16121296 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 1     731       1     726     726     951   65.0  0
MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAEMAQTTWVIENAELEQQ
IQGGKELKDALVQLIPGLDVSSQSRTNYGMNMRGRPLVVLIDGVRLNSSRSDSRQLDSVD
PFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMMEFEAGTKSGFNSSKDHDERIA
GAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQTGLQHSNRLDIMGTGTLNIDES
RQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPYVSKGLNSDRIPGTERHLISLQYSD
SDFLRQELVGQVYYRDESLRFYPFPTVNANKQATAFSSSQQDTDQYGMKLTLNSQLMDGW
QITWGLDAEHERFTSNQMFFDLAQASASGGLNNHKIYTTGRYPSYDITNLAAFLQSSYDI
NDIFTVSGGVRYQYTENRVDDFIDYTQQQKIAAGKAISADAIPGGSVDYDNFLFNAGLLM
HITERQQAWFNFSQGVALPDPGKYYGRGIYGAAVNGHLPLTKSVNVSDSKLEGVKVDSYE
LGWRFTGDNLRTQIAAYYSLSNKSVERNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWST
GVNFNVLKTESKVNGQWQKYDVKESSPSKATAYISWAPEPWSLRVQSTTSFDVSDAEGND
INGYTTVDFISSWLLPVGTLSFSVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRG
RTFGLNYSVLF
>gi|223713574|gb|ACDM01000024.1| GENE    12     17977  -     19314    746    445 aa, chain - ## HITS:1  COG:YPO0993 KEGG:ns NR:ns ## COG: YPO0993 COG3486 # Protein_GI_number: 16121295 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Lysine/ornithine N-monooxygenase # Organism: Yersinia pestis # 1     436       1     437     442     558   59.0  1e-159
MKKSVDFIGVGAGPFNLSIAALSHQIEELNCLFFDEHPHFSWHPGMLVPDCHMQTVFLKD
LVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDYLRWAAEDMNNLYFSHTVE
NIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVKHVTQSCFHASEMNLRRPDLS
GKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRNNFNALDEAAFADEYFTPEYISG
FSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELYHRFEVLRKPRNIRLLPSRSVTTLE
SSGPGWKLLMEHHLDRGRESLESDVVIFATGYRSALPQILPSLMPLITMHDKNTFKVRDD
FTLEWSGPKENNIFAVNASMQTHGIAEPQLSLMAWRSARILNRVLGRDLFDLSMPPALIQ
WRSGSRKKPQPEAAALTHYTTNIQE
>gi|223713574|gb|ACDM01000024.1| GENE    13     19311  -     21053   1499    580 aa, chain - ## HITS:1  COG:YPO0992 KEGG:ns NR:ns ## COG: YPO0992 COG4264 # Protein_GI_number: 16121294 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Yersinia pestis # 2     577       5     579     582     777   65.0  0
MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC
DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK
PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR
VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES
>gi|223713574|gb|ACDM01000024.1| GENE    14     21053  -     22000    242    315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229250525|ref|ZP_04374554.1| acetyltransferase, ribosomal protein N-acetylase [Catenulispora acidiphila DSM 44928] # 150     306      29     184     194 97  32 9e-20
MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGWLCDALDQIFIAAPQLS
AVALPWAEWCEEPQALTLFGQVKSDIIHRTAFWQLPLWLSSPANRASGEMVFDAEREIYF
PQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRWMNDPRVEYFWEQSGSLEVQT
AYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIGRHYSWQPFDRGLHLLVGEQQWR
GAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQRLFRHLEPAGYRTIKEFDFPHKRSR
MVMADRHHFFTEVGL
>gi|223713574|gb|ACDM01000024.1| GENE    15     22001  -     23725   1364    574 aa, chain - ## HITS:1  COG:SMa2404 KEGG:ns NR:ns ## COG: SMa2404 COG4264 # Protein_GI_number: 16263713 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Sinorhizobium meliloti # 9     573       6     579     585     212   28.0  2e-54
MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELIIPLDEQKSLHFRVAYFSPTQH
HRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLCETFHQRVLESHAHTQQAI
DARHDWTALREKALNFGEAEQALLTGHAFHPAPKSHEPFNRREAERYLPDMAPHFPLRWF
SVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDNQWLFPLHPWQGEYLLQQGWCQA
LVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIKFSLSVRLTNSIRTLSVKEVKRGMR
LARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDLNGNIMQESLFALRENLLVDQPKSQTN
VLVSLTQAAPDGGDSLLVSAVKRLSDRLGITVQQAAHAWVDAYCQQVLKPLFTAEADYGL
VLLAHQQNILVQMLGDLPVGFIYRDCQGSAFMPHATDWLDSIGEAQAENIFTHEQLLRYF
PYYLLVNSTFAVTAALGAAGLDSESNLMARVRASLAEVRDQVTHKTCLNYVLESPYWNVK
GNFFCYLNDHNENTIVDPSVIYFDFANPLQAQEV
>gi|223713574|gb|ACDM01000024.1| GENE    16     23861  -     25054    596    397 aa, chain + ## HITS:1  COG:YPO0988 KEGG:ns NR:ns ## COG: YPO0988 COG0477 # Protein_GI_number: 16121292 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 16     391      20     395     407     306   58.0  3e-83
MSPGIEDTPQKPLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTNLSLSVWAALLMLGSML
FLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLMATSAITTAVGLGILIIAR
IAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSCGRLFGPLCAAAMLAIHPLAP
LGLLMAAPVLALLMLLRLPGTPPQPTPERKSVSLKRDCLPYLLCAILLAAAVSMMQLGLS
PALTRQFATDTTAISQQVAWLLGLSAVAALIAQFGVLRPQRLTPVALLLSAGVLMSGGLA
IMLSEQLWLFYPGCAVLSFGAALATPAYQLLLNDKLADGAGAGWLATSHTLGYGLCALLV
PLVSKTGVAIALIMAALFATILFTIVSVFIWHYRAIK
>gi|223713574|gb|ACDM01000024.1| GENE    17     25543  -     26430    513    295 aa, chain + ## HITS:1  COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     295       2     296     296     577   98.0  1e-164
MPLLDKLREQYGVRPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKKEIQRVYDE
NHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVN
RQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQA
LWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>gi|223713574|gb|ACDM01000024.1| GENE    18     26470  -     26769     95     99 aa, chain - ## HITS:1  COG:VC0817 KEGG:ns NR:ns ## COG: VC0817 COG2801 # Protein_GI_number: 15640835 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 19      99      35     115     327      86   58.0  1e-17
MKRPVMRDLYAVAVAFLGPHCVKWWRRYLAQGIAGLESHSRRPKRSPSTKTGTCEVALIL
ELRSQRNLGARRIQSELKRLHSISLAIATIHKVLFQNQV
>gi|223713574|gb|ACDM01000024.1| GENE    19     27128  -     27769    385    213 aa, chain - ## HITS:1  COG:no KEGG:ECSP_1312 NR:ns ## KEGG: ECSP_1312 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1     213       2     214     214     400  100.0  1e-110
MKQGMANSISMTWQLLCDEHGFTREHYNQLKKFSPETLREIIAEIASCHPSTSVLLRNKW
LTPPEDILEQITREYERRIQNCPPFRSEKEAESWLNELSFAVIAPLYRVAPEQTEQVESF
VLQLIAEQERVWELILTNDGYSWHCALYDILFHLVLRNMEDQPEHQKQRITKIFYEPDAR
LVAEEIKFRIQSLYDDEQKRALSELVNDFTSKE
>gi|223713574|gb|ACDM01000024.1| GENE    20     27793  -     27996    115     67 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_1387 NR:ns ## KEGG: ECH74115_1387 # Name: not_defined # Def: LdaB # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      67      23      89      89     129   98.0  4e-29
MGNVECTEAQREWLLLRRNYCLAQISSPPLPEKLDISEVAKAADATLRRMGIATPSGEVF
RKGTPVC
>gi|223713574|gb|ACDM01000024.1| GENE    21     28141  -     28779    476    212 aa, chain - ## HITS:1  COG:ECs1387 KEGG:ns NR:ns ## COG: ECs1387 COG1475 # Protein_GI_number: 15830641 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     212       1     212     212     427  100.0  1e-120
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEV
VANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKR
LKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTNERIGTEL
GMDQDEVLRLKQISGLTELFQEEDFSPAWTVR
>gi|223713574|gb|ACDM01000024.1| GENE    22     28764  -     29996    573    410 aa, chain - ## HITS:1  COG:ECs1386 KEGG:ns NR:ns ## COG: ECs1386 COG3969 # Protein_GI_number: 15830640 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli O157:H7 # 1     410       1     410     410     830   99.0  0
MSDTLLTEKILTGENVLRAAIARIEWIFETFPSVCLSFSGGKDSTVLFHLVAEVARRRKR
HFSVLFIDWEAQYRCTIEHIQKMREMYHDVTETFYWVALPLTTVNGVSQFQPEWICWEPG
VTWVRQPPEEAITDMTYFPFFRYAMTFEEFVPAFSSWFAGNRCGVAVLTGVRADESLNRF
MGLVSQRKLRYADDKPWTTASPEGFYYTMYPLYDWKARDIWIYNARACAIYNPLYDLMYR
ADVPLRNMRVCEPFGPEQRKGLWLYHVLEPETWARMCERVSGAASGALYANESGAYFALR
KRISKPAHHTWRSYAMFLLDVMPERTAEHYRNKIAVYLRWYQTRGFPDDIPDEQENDLGS
RDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLQRMKERRKEWGIL
>gi|223713574|gb|ACDM01000024.1| GENE    23     30224  -     30352     76     42 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_1384 NR:ns ## KEGG: ECH74115_1384 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      42       1      42      42      66  100.0  4e-10
MQMVNNSNIILQEVFTVIELPPDKVYSLRNYSTETFPVSFEQ
>gi|223713574|gb|ACDM01000024.1| GENE    24     30497  -     33178    840    893 aa, chain - ## HITS:1  COG:Z1202 KEGG:ns NR:ns ## COG: Z1202 COG1112 # Protein_GI_number: 15800723 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Escherichia coli O157:H7 EDL933 # 183     893       1     711     711    1428   99.0  0
MVTICVDGENKTHKITDWTLWAGNDDREVMLTCHFRSGRKYTRPLSVCQITPTVNLRNVF
LERKGNAVTSRAELVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR
VANERIFYARGNNRNIDENILRQIKKIVPHPDTALHAYCSGQSKKRDSPWGLIFPFGLNE
SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM
DKQQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA
SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN
RIDLLLNFMILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEVFKKSDFKIL
LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGA
LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPNSPSPPAEYYNCEKY
SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITA
KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR
ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA
ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR
DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI
EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
>gi|223713574|gb|ACDM01000024.1| GENE    25     33419  -     34153    422    244 aa, chain - ## HITS:1  COG:Z1200 KEGG:ns NR:ns ## COG: Z1200 COG2831 # Protein_GI_number: 15800721 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Hemolysin activation/secretion protein # Organism: Escherichia coli O157:H7 EDL933 # 1     244     105     348     348     460  100.0  1e-129
MSTLQNRLVDHGYVTTRVLAPSQDLKSGILRLVIIPGVVRHVRLTPDSDDYIQLYSSFPA
HEGSLLDLRDIEQGLDLGNSRIQGQHTELNATSGNLSTQNAQLSADTLSARTAGQFSSNG
GTINADTLQISAQSLSNRKGSLIQTGTGDFSLSLPGSVDNREGLLAANGAVRLDALSLDN
RKGKVQAEQSPSLQKSPPTFLKPFVAGVCAALLAVSVAIPGWQFLTQPSPEEQHFTWGNG
CKKQ
>gi|223713574|gb|ACDM01000024.1| GENE    26     34568  -     34717     81     49 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|300946335|ref|ZP_07160618.1| ## NR: gi|300946335|ref|ZP_07160618.1| conserved hypothetical protein [Escherichia coli MS 116-1] # 1      49       1      49      49      68  100.0  2e-10
MIKIKSILAGLLLSILVPVDAGKYRKGGSVPSQNMVGGIVRRLVIVGMT
>gi|223713574|gb|ACDM01000024.1| GENE    27     35139  -     35330    214     63 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_1377 NR:ns ## KEGG: ECH74115_1377 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      63       1      63      63     114   98.0  1e-24
MSEDVPLPKVNQRYKDDHGALVTLTSVEETRVVFMQDGYPHPCMRPMYNFLGKFKPEPRE
EKE
>gi|223713574|gb|ACDM01000024.1| GENE    28     35383  -     35616    245     77 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3343 NR:ns ## KEGG: EC55989_3343 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      77      26     102     102     146   98.0  2e-34
MARSDYDIINLSLEHELNEWLAERGYAGLVDNRNRLAEVVTRKLQDSFYINVSRDALNTA
YSEHPEWFSGLVSGDEN
>gi|223713574|gb|ACDM01000024.1| GENE    29     35712  -     36335    529    207 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3344 NR:ns ## KEGG: EC55989_3344 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     207      13     219     219     407   98.0  1e-112
MRTRIDYLADKYCFTERNESPRLRRQWQDVLEECRQTEAGPEERLRIALLNVDYVTSFEL
PFRLLLTRTPQLIAALREEWGISQKNVVFNDKRFGCVYSLKASLSGVPDTYRYHLSHRIR
RVVGNENTSLPYQQVAREVKAPRERLKYALEAGLLVTALDGLFWFGSQRIAADVLRLRKA
GMPVVTTTVEVHDNLTGTTRKVPAYHL
>gi|223713574|gb|ACDM01000024.1| GENE    30     36424  -     36933     54    169 aa, chain - ## HITS:1  COG:no KEGG:ECSP_1300 NR:ns ## KEGG: ECSP_1300 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1     169       1     169     169     324  100.0  8e-88
MQITEALISEPGEIRRFVQQAVDHWPNLLAFHFTLYSAEGIYGQQIQTFCSSFHRRVHER
ITEHNHTVSPSAPVVLRWLREQHEGAQIRCLLLLSQTSICHPRVGVMADEECAQLVDLLQ
QTWSVISAGGQCRVERCFRVARPGSSGQYVALKTAVQSFMSQVIATIIR
>gi|223713574|gb|ACDM01000024.1| GENE    31     37664  -     37849    103     61 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_1372 NR:ns ## KEGG: ECH74115_1372 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      61      92     152     152     115  100.0  7e-25
MRKYYRHILVRGKETETISERLIREADTREYELWRPVRRFFSIVFLIVLLGCIHSLITTI
K
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:53:21 2011
 Seq name: gi|223713573|gb|ACDM01000025.1| Escherichia sp. 4_1_40B cont1.25, whole genome shotgun sequence 
 Length of sequence - 10229 bp
 Number of predicted genes - 10, with homology - 9
 Number of transcription units - 9, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        404 -      1528    243  ## COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase
                               -    Prom      1581 -      1640    4.8 
                               -    Term      2141 -      2184    2.0 
     2     2 Tu  1     .       -    CDS       2258 -      2455    216  ## COG3311 Predicted transcriptional regulator
                               -    Prom      2571 -      2630    3.2 
                               -    Term      2928 -      2969    3.2 
     3     3 Tu  1     .       -    CDS       3020 -      3292     84  ## ECSP_1291 hypothetical protein
     4     4 Op  1     .       +    CDS       3380 -      3559    140  ## ECED1_5037 hypothetical protein
     5     4 Op  2     .       +    CDS       3611 -      3805    150  ## ECH74115_1362 hypothetical protein
                               +    Prom      3874 -      3933    3.6 
     6     5 Tu  1     .       +    CDS       4166 -      4294    106  ## gi|217328106|ref|ZP_03444188.1| transposase OrfB
                               -    Term      5470 -      5514   -0.8 
     7     6 Tu  1     .       -    CDS       5574 -      5792     93  ## ECO111_1264 hypothetical protein
                               -    Prom      5812 -      5871    3.2 
                               +    Prom      6559 -      6618    6.5 
     8     7 Tu  1     .       +    CDS       6640 -      6852     61  ## 
                               +    Term      7100 -      7139    2.1 
                               +    Prom      7115 -      7174    7.5 
     9     8 Tu  1     .       +    CDS       7244 -      9334   1447  ## COG4771 Outer membrane receptor for ferrienterochelin and colicins
                               +    Term      9368 -      9416   -0.1 
                               +    Prom      9437 -      9496    2.7 
    10     9 Tu  1     .       +    CDS       9595 -      9792    123  ## ECO111_1262 hypothetical protein
Predicted protein(s)
>gi|223713573|gb|ACDM01000025.1| GENE     1       404  -      1528    243    374 aa, chain - ## HITS:1  COG:ECs1370 KEGG:ns NR:ns ## COG: ECs1370 COG1819 # Protein_GI_number: 15830624 # Func_class: G Carbohydrate transport and metabolism; C Energy production and conversion # Function: Glycosyl transferases, related to UDP-glucuronosyltransferase # Organism: Escherichia coli O157:H7 # 1     374       1     374     374     763  100.0  0
MRKRILFIGPPLYGLLYPLISLAQAFRVIGHDVVISSAGKFANKAAEAGLVVFDAVPGLD
SEAGYRHQEELRKKSNIIGHFSFFSDEMADNLIDFAGKWRPDLIVYPPLDPAGPLVAAKY
RIPSVMLAVGFAHTSAHIQMLNRSLSNAYRRHGVSGPLCDLAWIDVAPPSMSILKNAGEP
VISMRYIPYNGGAVKETWWDRDSDRKRLLISLGTVKPMVDGLELISWVMDSANEVDADII
LQLAINARTGLRKLPSNVRLVDWIPMGVFLNGADGFIHHGGAGNTLTALYSGIPQIVFGE
GADRSVNAEIVAKRGCGIIPDKHGLTSDLVNRLLYDDSLRFCSDQVAAEMAEQPSPAEIA
EVLMRKLKNNGKQL
>gi|223713573|gb|ACDM01000025.1| GENE     2      2258  -      2455    216     65 aa, chain - ## HITS:1  COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 1      65       1      65      65     121  100.0  3e-28
MLTTTSHDSVFLRADNSLIDMNYITSFTGMTDKWFYKLISEGHFPKPIKLGRSSRWYKSE
VEQWK
>gi|223713573|gb|ACDM01000025.1| GENE     3      3020  -      3292     84     90 aa, chain - ## HITS:1  COG:no KEGG:ECSP_1291 NR:ns ## KEGG: ECSP_1291 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      90       1      90      90     164   98.0  1e-39
MSYQPGGLVLPDLSRRGYLSKNASSSNRFGLVNGDGLSKDSRCWCTFSRWRSSMDNAIAC
SSSLVIVCTWKAIYRSTSHYGKNVLLLQLA
>gi|223713573|gb|ACDM01000025.1| GENE     4      3380  -      3559    140     59 aa, chain + ## HITS:1  COG:no KEGG:ECED1_5037 NR:ns ## KEGG: ECED1_5037 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1      59       1      59      59      97  100.0  2e-19
MDLSPEDAKFLRELQHRMLREAIIEQQTGMSAIDPLRYKRASSPLVDDNSNADKTRPPH
>gi|223713573|gb|ACDM01000025.1| GENE     5      3611  -      3805    150     64 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_1362 NR:ns ## KEGG: ECH74115_1362 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      64       1      64      64     105  100.0  5e-22
MNENKIKRLEQLLQARQREFATKWGRAALPHERLTYFPLEDLIKNNGKKIRSDKKHFLEC
NEDK
>gi|223713573|gb|ACDM01000025.1| GENE     6      4166  -      4294    106     42 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|217328106|ref|ZP_03444188.1| ## NR: gi|217328106|ref|ZP_03444188.1| transposase OrfB [Escherichia coli O157:H7 str. TW14588] # 1      42       1      42      42      73  100.0  3e-12
MGADVTEFSVQGKSGTCRQFSDLFNREIISYSLSERSVMEHR
>gi|223713573|gb|ACDM01000025.1| GENE     7      5574  -      5792     93     72 aa, chain - ## HITS:1  COG:no KEGG:ECO111_1264 NR:ns ## KEGG: ECO111_1264 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      72      19      90      90     132   98.0  5e-30
MFKYAEMLMAEEDDKVCELIFKQQDNLILKINDRFPRIIIKKYRTLQGKVVWLWILPFVI
EWLIVCTLGVNS
>gi|223713573|gb|ACDM01000025.1| GENE     8      6640  -      6852     61     70 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MPYHDYEYQQDTTDIRKDTTFFTPENNAKKLLPHRLSLVLSAPTMWADMIKLSRKLFASS
ADNPNGDCLC
>gi|223713573|gb|ACDM01000025.1| GENE     9      7244  -      9334   1447    696 aa, chain + ## HITS:1  COG:ECs1360 KEGG:ns NR:ns ## COG: ECs1360 COG4771 # Protein_GI_number: 15830614 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli O157:H7 # 1     696       1     696     696    1312  100.0  0
MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAASVSVISQEELQSSQYH
DLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDGVRQGGSSDVTPNGFSAMN
TGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLNLQESNKW
GNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSLSDTAATRIPYPTESQNYNLGAR
LDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGYDRTLRYERNKISAGYDHTFTFGTW
KSYLNWNETENKGRELVRSVLKRDKWGLAGQPRELKESNLILNSLLLTPLGESHLVTVGG
EFQSSSMKDGVVLASTGETFRQKSWSVFAEDEWHLTDALALTAGSRYEHHEQFGGHFSPR
AYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLLGNPDLKPEESVSYEA
GVYYDNPAGLNANVTGFMTDFSNKIVSYSINDNTNSYVNSGKARLHGVEFAGTLPLWSED
VTLSLNYTWTRSEQRDGDNKGAPLSYTPEHMVNAKLNWQITEEVASWLGARYRGKTPRFT
QNYSSLSAVQKKVYDEKGEYLKAWTVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYS
AGKSTLYAGDYFQTGSSTTGYVIPERNYWMSLNYQF
>gi|223713573|gb|ACDM01000025.1| GENE    10      9595  -      9792    123     65 aa, chain + ## HITS:1  COG:no KEGG:ECO111_1262 NR:ns ## KEGG: ECO111_1262 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      65      10      74      74     114  100.0  1e-24
MRLAGQVLITLITWRSHVSGSIPLSFAATDQAVHHCRTIARHLKVRSRQQEGIILSRHFS
RGPVR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:53:39 2011
 Seq name: gi|223713572|gb|ACDM01000026.1| Escherichia sp. 4_1_40B cont1.26, whole genome shotgun sequence 
 Length of sequence - 1612 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 1, operones - 1 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        39 -        98    3.2 
     1     1 Op  1   6/0.000   +    CDS        164 -       589    242  ## COG2963 Transposase and inactivated derivatives
     2     1 Op  2   5/0.000   +    CDS        586 -       936    326  ## COG3436 Transposase and inactivated derivatives
     3     1 Op  3     .       +    CDS        967 -      1612    477  ## COG3436 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713572|gb|ACDM01000026.1| GENE     1       164  -       589    242    141 aa, chain + ## HITS:1  COG:ECs1393 KEGG:ns NR:ns ## COG: ECs1393 COG2963 # Protein_GI_number: 15830647 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     141       1     141     141     241   90.0  3e-64
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRV
SRRLPVTTSSDTGVELLPVEITPDEQKKPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMT
LENPSPELLTVLIRELSGRGR
>gi|223713572|gb|ACDM01000026.1| GENE     2       586  -       936    326    116 aa, chain + ## HITS:1  COG:ECs3868 KEGG:ns NR:ns ## COG: ECs3868 COG3436 # Protein_GI_number: 15833122 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     116       1     116     116     225   96.0  1e-59
MISLPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLNDNPFSGHLFIFRGRRGDTVKILWAD
ADGLCLFTKRLKEGQFIWPAVRDGKVSITRSQLVMLLDKLDWRQPKTSRLNSLTML
>gi|223713572|gb|ACDM01000026.1| GENE     3       967  -      1612    477    215 aa, chain + ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     215       1     215     537     332   93.0  4e-91
MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSVLARAEEKIEEDEREIEH
LRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSRHR
RPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALKVIRTERVKKACTK
CDCIVEAPAPSRPIERGIAGPELLARVLTGKYCEH
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:53:57 2011
 Seq name: gi|223713571|gb|ACDM01000027.1| Escherichia sp. 4_1_40B cont1.27, whole genome shotgun sequence 
 Length of sequence - 59828 bp
 Number of predicted genes - 62, with homology - 58
 Number of transcription units - 34, operones - 17 average op.length -  2.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.222   +    CDS          1 -       150     60  ## COG3436 Transposase and inactivated derivatives
     2     1 Op  2     .       +    CDS        202 -       549    225  ## COG3436 Transposase and inactivated derivatives
                               -    Term       824 -       849   -0.5 
     3     2 Tu  1     .       -    CDS        866 -      4957   2090  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom      5034 -      5093    5.1 
     4     3 Op  1  23/0.000   +    CDS       5554 -      5919    161  ## COG2963 Transposase and inactivated derivatives
     5     3 Op  2     .       +    CDS       5943 -      6680    123  ## COG2801 Transposase and inactivated derivatives
                               +    Term      6894 -      6933    4.1 
                               -    Term      6489 -      6534   -0.7 
     6     4 Op  1   7/0.000   -    CDS       6775 -      6990    201  ## COG1662 Transposase and inactivated derivatives, IS1 family
     7     4 Op  2     .       -    CDS       7197 -      7469    102  ## COG3677 Transposase and inactivated derivatives
                               -    Prom      7663 -      7722    2.7 
                               -    Term      8178 -      8208    5.0 
     8     5 Tu  1     .       -    CDS       8290 -      8535    106  ## COG1943 Transposase and inactivated derivatives
     9     6 Op  1  23/0.000   -    CDS       9224 -      9421     90  ## COG2963 Transposase and inactivated derivatives
    10     6 Op  2  11/0.000   -    CDS       9469 -      9681     98  ## COG2801 Transposase and inactivated derivatives
    11     6 Op  3     .       -    CDS       9709 -     10065    120  ## COG2801 Transposase and inactivated derivatives
    12     7 Tu  1     .       -    CDS      10167 -     10331     57  ## 
                               -    Prom     10460 -     10519    6.3 
    13     8 Op  1   6/0.000   +    CDS      10881 -     11285    200  ## COG2963 Transposase and inactivated derivatives
    14     8 Op  2     .       +    CDS      11282 -     11545    161  ## COG3436 Transposase and inactivated derivatives
                               +    Term     11631 -     11660   -0.8 
    15     9 Tu  1     .       -    CDS      11596 -     11757     86  ## 
    16    10 Op  1     .       +    CDS      11710 -     11922    166  ## COG3436 Transposase and inactivated derivatives
    17    10 Op  2     .       +    CDS      11989 -     12177    125  ## ECED1_0286 hypothetical protein
    18    11 Tu  1     .       -    CDS      12195 -     14555    608  ## COG4951 Uncharacterized protein conserved in bacteria
    19    12 Op  1     .       -    CDS      14710 -     15273    317  ## E2348C_1075 hypothetical protein
                               -    Term     15329 -     15353   -1.0 
    20    12 Op  2     .       -    CDS      15355 -     15525     67  ## 
                               -    Prom     15686 -     15745    2.2 
                               -    Term     16552 -     16615   24.2 
    21    13 Tu  1     .       -    CDS      16649 -     18484    592  ## E2348C_1074 hypothetical protein
    22    14 Op  1     .       +    CDS      18585 -     18872    152  ## COG3311 Predicted transcriptional regulator
    23    14 Op  2     .       +    CDS      18847 -     20373    226  ## E2348C_1073 hypothetical protein
                               +    Term     20441 -     20496   11.0 
                               -    Term     20489 -     20521   -1.0 
    24    15 Tu  1     .       -    CDS      20543 -     21760    321  ## COG0582 Integrase
                               -    Prom     21845 -     21904    5.4 
                               -    Term     22213 -     22252    8.4 
    25    16 Op  1  19/0.000   -    CDS      22278 -     24554   1361  ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8
    26    16 Op  2     .       -    CDS      24585 -     24905    325  ## COG2127 Uncharacterized conserved protein
                               -    Prom     24971 -     25030    1.8 
    27    17 Tu  1     .       -    CDS      25075 -     25317     64  ## 
                               -    Prom     25366 -     25425    2.2 
                               +    Prom     25081 -     25140    4.6 
    28    18 Tu  1     .       +    CDS      25228 -     25452    208  ## COG1278 Cold shock proteins
                               +    Term     25489 -     25522    4.1 
                               -    Term     25470 -     25515    7.1 
    29    19 Op  1  13/0.000   -    CDS      25525 -     27471    368  ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9
    30    19 Op  2     .       -    CDS      27468 -     28583   1233  ## COG0845 Membrane-fusion protein
                               +    Prom     28536 -     28595    3.9 
    31    20 Tu  1     .       +    CDS      28740 -     29690    658  ## COG2990 Uncharacterized protein conserved in bacteria
                               +    Term     29807 -     29848    0.2 
                               -    Term     29658 -     29686   -0.6 
    32    21 Tu  1     .       -    CDS      29687 -     31345   1026  ## COG3593 Predicted ATP-dependent endonuclease of the OLD family
                               -    Prom     31516 -     31575    7.5 
                               +    Prom     31469 -     31528    8.2 
    33    22 Tu  1     .       +    CDS      31771 -     32466    783  ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)
                               +    Term     32467 -     32520    9.6 
                               +    Prom     32758 -     32817    3.4 
    34    23 Tu  1     .       +    CDS      32961 -     33860    898  ## COG2431 Predicted membrane protein
                               +    Prom     33912 -     33971    4.8 
    35    24 Op  1   2/0.556   +    CDS      34004 -     35656   1950  ## COG1151 6Fe-6S prismane cluster-containing protein
    36    24 Op  2   5/0.222   +    CDS      35668 -     36636    938  ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
                               +    Term     36646 -     36685    5.0 
                               +    Prom     36682 -     36741    5.3 
    37    25 Op  1   5/0.222   +    CDS      36769 -     38487   1752  ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
    38    25 Op  2   4/0.222   +    CDS      38524 -     39525   1183  ## COG2008 Threonine aldolase
    39    25 Op  3   4/0.222   +    CDS      39536 -     40966   1217  ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases
                               +    Prom     40978 -     41037    3.0 
    40    25 Op  4     .       +    CDS      41065 -     42078    936  ## COG0451 Nucleoside-diphosphate-sugar epimerases
                               -    Term     41901 -     41942    1.0 
    41    26 Op  1   4/0.222   -    CDS      42075 -     42905    784  ## COG3023 Negative regulator of beta-lactamase expression
    42    26 Op  2     .       -    CDS      42902 -     43225    522  ## COG0393 Uncharacterized conserved protein
                               -    Prom     43301 -     43360    6.2 
                               +    Prom     43251 -     43310    4.1 
    43    27 Tu  1     .       +    CDS      43351 -     43866    323  ## B21_00876 hypothetical protein
                               +    Term     43897 -     43937    5.6 
                               +    Prom     43882 -     43941    2.0 
    44    28 Op  1   7/0.000   +    CDS      44012 -     44812    246  ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16
    45    28 Op  2  12/0.000   +    CDS      44830 -     45561   1116  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
    46    28 Op  3  12/0.000   +    CDS      45568 -     46284    847  ## COG4215 ABC-type arginine transport system, permease component
    47    28 Op  4   4/0.222   +    CDS      46284 -     46952    941  ## COG4160 ABC-type arginine/histidine transport system, permease component
                               +    Term     47092 -     47136    9.1 
                               +    Prom     47117 -     47176    7.3 
    48    29 Tu  1     .       +    CDS      47243 -     47974    913  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
                               +    Term     48152 -     48183    2.5 
                               -    Term     48013 -     48049    2.4 
    49    30 Op  1     .       -    CDS      48173 -     49300   1076  ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
    50    30 Op  2     .       -    CDS      49341 -     49829    376  ## LF82_2664 inner membrane protein YbjO
    51    30 Op  3  36/0.000   -    CDS      49889 -     50734    755  ## COG1177 ABC-type spermidine/putrescine transport system, permease component II
    52    30 Op  4  30/0.000   -    CDS      50731 -     51684    964  ## COG1176 ABC-type spermidine/putrescine transport system, permease component I
    53    30 Op  5  13/0.000   -    CDS      51694 -     52827   1472  ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components
    54    30 Op  6     .       -    CDS      52922 -     54034   1175  ## COG0687 Spermidine/putrescine-binding periplasmic protein
                               -    Prom     54202 -     54261    6.9 
                               -    Term     54323 -     54377    6.1 
    55    31 Op  1     .       -    CDS      54385 -     54861    445  ## EcE24377A_0925 TPR repeat-containing protein
                               -    Prom     54888 -     54947    1.6 
    56    31 Op  2   4/0.222   -    CDS      54949 -     55851   1507  ## PROTEIN SUPPORTED gi|15830186|ref|NP_308959.1| ribosomal protein S6 modification protein
    57    31 Op  3     .       -    CDS      55912 -     56634    719  ## COG0778 Nitroreductase
    58    31 Op  4     .       -    CDS      56618 -     56905    249  ## SSON_0835 hypothetical protein
                               -    Prom     57012 -     57071    4.8 
                               +    Prom     56982 -     57041    2.2 
    59    32 Tu  1     .       +    CDS      57065 -     57322    483  ## COG0695 Glutaredoxin and related proteins
                               +    Term     57334 -     57362    1.4 
    60    33 Tu  1     .       -    CDS      57352 -     57648    103  ## ECIAI39_0827 conserved hypothetical protein; putative inner membrane protein
                               +    Prom     57822 -     57881    5.5 
    61    34 Op  1     .       +    CDS      57999 -     58277    276  ## COG2985 Predicted permease
    62    34 Op  2     .       +    CDS      58277 -     59683   1533  ## COG2985 Predicted permease
Predicted protein(s)
>gi|223713571|gb|ACDM01000027.1| GENE     1         1  -       150     60     49 aa, chain + ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      49     489     537     537     108   97.0  3e-24
ALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVGELLPWNVVLTNK
>gi|223713571|gb|ACDM01000027.1| GENE     2       202  -       549    225    115 aa, chain + ## HITS:1  COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1     115     398     512     512     223   89.0  5e-59
MKTLSRHSELAKAFAYALNQWPALTYYANDGWAEADNNIAENALRMVSLGRKNYLFFGSD
HGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE
>gi|223713571|gb|ACDM01000027.1| GENE     3       866  -      4957   2090   1363 aa, chain - ## HITS:1  COG:NMB0700 KEGG:ns NR:ns ## COG: NMB0700 COG3468 # Protein_GI_number: 15676598 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 29     760       2     806    1815     267   32.0  1e-70
MNKIYALKYSSLTGGLIAVSELSKKVTGKTGRRLMTVSLVLSVTLSALPGKASTVSAEIP
YQTFRDFAENKGVFTPGVTGIEINDNNGNKVGVLDVPMLDFSSLSRDGHTTLIHPGYVVS
AKHSGLQSVSSATFGYDQIYKIVDNNLAGIDFSAPRLNKLVTEVIPADIQGKDKFNNNRY
TAFYRAGVGSQYIRYANGTDKLLQAYTPDKAYLTGGTVGKPYYTHYNGMKMISANPGNTF
DKNQGPLASYGQIGDSGSPLYAWDNIDKKWVLTGVTLHNYGVKGARNDWLLIPHDFISQK
LQDDLKPIIVASPEENILRWEFDRSRGTGTLSQGEKIFSMTGSVNGNANTGNNLVFSGNE
GKIELVSSVEQGAGYLQFDKDYTVLTNNNSTWTGAGIIVGDEANVKWGVNGIAGDYLHKV
GSGTLTVNGHGENKGGLKVGDGVVVLEQQPDANQKQQAFSHINIASGRATVKLNGANQVD
ADNISWGYRGGKLDLNGYDFTFSRLQAADYGAEISNDNQTDKSIVTLSLSPLKAEEINVV
VNNINIMGGAGKPGDLYYTTFDGNYYLLKSNRYGSALFGALNNQSEWQRLGKNKEKAIGL
YTQMKMQESDLLSYIYHGKITGNTSVEIPKLAGNDILTLDGSVSISGDMSKQDGALIFQG
HPVIHAGQTVSASQSDWENREFSLNNLNLNNADFSLSRNAFMNGNIRAVNQSTVIIGGDT
VFTDKNDGTGNDVISVEGKSAAAGTSSYTGHITLEQKSALDIRDNFRGGVTSEDSHINVS
SSSVLFSDASSFINSSLNIHKGGALTAQGGLFTSGSIDIGDASLLLTGTPVNSDDAAFLP
TINMADGGFKLMSDSSVLKARDQASVVGDIISDKQATISFGTESGKEGILSEKASRGLAV
GLLSGFNTAYRGAIHAPSASATMNNTWWQLTGDSSLRSLKNTGSMTYFTGSAANKAFHTL
TVDELTTNGTAYAMRTDLKNADKLVVNQKLSGKDNILLVDFLNKPTGEKLDIELVSAPGN
SSKDVFKGSEQAIGFSNVTPVITAIDAGDKTTWNLTGYRMAENPAATQSASGLASVGYKS
FLSEVNNLNKRMGDLRDINGEAGAWARIMSGTGSAGGGFSDNHTHVQVGVDKKHELDGLD
LFTGFTVTHTDSSASADAFKGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFA
GLGTRNYSTHSWYAGAEAGYRCHVTEDTWIEPQAELVYGAVSGKQFAWKDQGMHLSMKDR
DYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSR
MLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF
>gi|223713571|gb|ACDM01000027.1| GENE     4      5554  -      5919    161    121 aa, chain + ## HITS:1  COG:yi21_g3 KEGG:ns NR:ns ## COG: yi21_g3 COG2963 # Protein_GI_number: 16129938 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     121      16     136     136     207   98.0  4e-54
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTA
VAAGEQVVPASELAAAMKQIKELQRLLGKKTMENEILKEAVEYGRAKKWIAHAPLLPGDG
E
>gi|223713571|gb|ACDM01000027.1| GENE     5      5943  -      6680    123    245 aa, chain + ## HITS:1  COG:yi22 KEGG:ns NR:ns ## COG: yi22 COG2801 # Protein_GI_number: 16132094 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     243      23     265     301     468   94.0  1e-132
MSRAQLHVILRRTDDWKDGRRSRHSDDTDVLLRIYHVIGELPTYGYRRVWALLRRQAELD
GMPAINAKRVYRIMRQNALLLERKTAVPPSKRAHTGKVAVKESNQRWCSDGFEFRCDNGE
KLRVTFALDCCDREALHWAVTTGGFDSETVQDVMLGAVERRFRNELPASPVEWLTDNGSC
YRANETRQFARMLGLEPKNTAVRSPESNGITESFVKTIKRDYISIMPKPDGLTAAKNLTE
AFELL
>gi|223713571|gb|ACDM01000027.1| GENE     6      6775  -      6990    201     71 aa, chain - ## HITS:1  COG:ECs1301 KEGG:ns NR:ns ## COG: ECs1301 COG1662 # Protein_GI_number: 15830555 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS1 family # Organism: Escherichia coli O157:H7 # 1      70      61     130     145      86   62.0  9e-18
MLTSDDWGSYGWVVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHEKV
IGAFIEKHMFY
>gi|223713571|gb|ACDM01000027.1| GENE     7      7197  -      7469    102     90 aa, chain - ## HITS:1  COG:YPO0981 KEGG:ns NR:ns ## COG: YPO0981 COG3677 # Protein_GI_number: 16121285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1      86       1      86      87     131   75.0  3e-31
MASVNIHCPRCQSAQVYRHGQSPKGHDRFRCRDCHRVFQLTYTYQARKPGMKELITEMAF
NGAGVRDTARTLKIGINTVIRTLKNSRQSE
>gi|223713571|gb|ACDM01000027.1| GENE     8      8290  -      8535    106     81 aa, chain - ## HITS:1  COG:YPO2985 KEGG:ns NR:ns ## COG: YPO2985 COG1943 # Protein_GI_number: 16123166 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1      81      72     152     152     159   93.0  9e-40
MSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNRAFWCRGDYVDTVDKNTAKIQDYIKHQLE
EDKMGEQLSIPYPGSPFTGRK
>gi|223713571|gb|ACDM01000027.1| GENE     9      9224  -      9421     90     65 aa, chain - ## HITS:1  COG:ECs1337 KEGG:ns NR:ns ## COG: ECs1337 COG2963 # Protein_GI_number: 15830591 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      62       1      62     141     105   87.0  1e-23
MKQKTLSAEPRRSFSNNFKLQMVKLALQPGASVARIAREHDINVNLLFKWLRLWQNEGRV
SRGSG
>gi|223713571|gb|ACDM01000027.1| GENE    10      9469  -      9681     98     70 aa, chain - ## HITS:1  COG:RSc2265 KEGG:ns NR:ns ## COG: RSc2265 COG2801 # Protein_GI_number: 17546984 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1      67     199     265     269      91   62.0  3e-19
MSRRGNCLDNAAMESFFSTLKSECYYLNKNNNLHHLKQDIIDYIEYYNHHCIKEKLDGMS
PVQYRLKHFS
>gi|223713571|gb|ACDM01000027.1| GENE    11      9709  -     10065    120    118 aa, chain - ## HITS:1  COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     117      83     199     283     155   60.0  2e-38
MKELGISSLIRVKKYRSYKGEQGRICDNLLKRNFDAKRPNEKWVTDVTEFKVNGKKLYLS
PIMDLYNGEIISYNLATRPQPSMVQTMLTDALKQLSKDEHPILHSDQGWQYQMSRWQR
>gi|223713571|gb|ACDM01000027.1| GENE    12     10167  -     10331     57     54 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MLNVQEKVSIVNELRQEWSLSRLLIVSGLSGVHFTIMSDGLLLLTGISLPERLC
>gi|223713571|gb|ACDM01000027.1| GENE    13     10881  -     11285    200    134 aa, chain + ## HITS:1  COG:ECs0328 KEGG:ns NR:ns ## COG: ECs0328 COG2963 # Protein_GI_number: 15829582 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 8     134      17     133     133     122   55.0  1e-28
MKSLTTVRKKSPNYPVEFKIKMVELSHRPDISVAQLAREHEINDNLLFKWCQYWREGKLR
PPSTTENSVPELLPITLDTEDVVPTTSSRSQPVAAAAPESLNISCEVTFRHGSLRLNGTI
SENILNLLIRELKR
>gi|223713571|gb|ACDM01000027.1| GENE    14     11282  -     11545    161     87 aa, chain + ## HITS:1  COG:Z2127 KEGG:ns NR:ns ## COG: Z2127 COG3436 # Protein_GI_number: 15801566 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1      85      72     156     186     167   96.0  5e-42
MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVFIFRGRNGSQVKLLWST
GDGLCLLTKRLERGRFAWPSARDDKGD
>gi|223713571|gb|ACDM01000027.1| GENE    15     11596  -     11757     86     53 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MIRTEEQVIFAAQTDHPQRILSYVVISLGPAVVSIVSQRWPLVQYVRERFRQF
>gi|223713571|gb|ACDM01000027.1| GENE    16     11710  -     11922    166     70 aa, chain + ## HITS:1  COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 2      70     444     512     512     136   86.0  9e-33
MVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGEL
LPWRVALPTE
>gi|223713571|gb|ACDM01000027.1| GENE    17     11989  -     12177    125     62 aa, chain + ## HITS:1  COG:no KEGG:ECED1_0286 NR:ns ## KEGG: ECED1_0286 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1      62      65     126     126     131   98.0  9e-30
MANYQLNEQLLEGCRPWIVIFDDVLTAGSHFKAMKSLILQHIPEACILGLFVARTTRGAQ
II
>gi|223713571|gb|ACDM01000027.1| GENE    18     12195  -     14555    608    786 aa, chain - ## HITS:1  COG:ECs1305_1 KEGG:ns NR:ns ## COG: ECs1305_1 COG4951 # Protein_GI_number: 15830559 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     392       1     392     392     802   96.0  0
MVHKSDSDELAALRAENARLVSLLEAHGIEWRRKPPISVQRVSVLSTNEKVALFRRLFRG
RDDVWALRWESKTSGKSGYSPACANEWQARICGKPRIKCGDCAHRQLIPVSDLVIYYHLA
GTHTAGMYPLLEDDSCYFLAVDFDEAEWQKDASAFMRSCDELGVPAALEISRSRQGAHVW
IFFASRVSAREARRLGTAIISYTCNRTRQLRLGSYDRLFPNQDTMPKGGFGNLIALPLQK
RPRESGGSVFVDMNFQPYSDQWAFLASVIPMNVQNIEPTILRATGSIHPLDVNFINEEDL
GTPWEGKKSSGNRLNISIAEPLKITLANQIYFEKAQLPQVLINRLIRLAAFPNPEFYKAQ
AMRMSVWNKPRVIGCAENYPQHIALPQGCLDSVLSFLRDNNIAAELIDKRFVGTECNAVF
MGNLRAEQEEAVSALLRYDTGVLCAPTAFGKTVTAAAVIARRKVNTLILVHRTELLKQWQ
ERLEVFLQVGDNIGIIGGGKHKPCGNIDIAVVQSISRHGEVEPLVRNYGQIIVDECHHIG
AVSFSAILKETNARYLLGLTATPIRRDGLHPIIFMYCGAIRHTAVRPKESPHNLEVLTRS
RFTSGHLPSDARIQDIFREIALDHDRTVAIAEEAMKAFGQGRKVLVLTERTDHLDEIASV
MNSLKLSPFILHGRLSKKKRAMLISGLNALPPDSPRILLSTGRLIGEGFDHPPLDTLILA
MPVSWKGTLQQYAGRLHREHTGKSDVRIIDFVDTAYPVLLRMWDKRQRGYKAMGYRIVAD
GEGLSF
>gi|223713571|gb|ACDM01000027.1| GENE    19     14710  -     15273    317    187 aa, chain - ## HITS:1  COG:no KEGG:E2348C_1075 NR:ns ## KEGG: E2348C_1075 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1     187       1     187     187     374   98.0  1e-103
MYNANPNYKMDFMILKDVNEHMDGMFQRFSKLLPFRIDFAYRKDTPSFGHSCKHSMCMEI
YRLLCETQTMLAGYYWVMEYTPDKGLHIHFVGYLDGQRHKNSYQISRQLGDIWRRITEGE
GYFHLCRAKDKYPVRIDHVMHYSDKSAVDNLRYALSYLAKQDQKEHGIILGRSRLPEKSN
RGRPRHN
>gi|223713571|gb|ACDM01000027.1| GENE    20     15355  -     15525     67     56 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MLPETQFYEVCFSIVIRTGSQFKRVSLYSEVLPHHSNAVIQNSFIRLSVLLVYFVY
>gi|223713571|gb|ACDM01000027.1| GENE    21     16649  -     18484    592    611 aa, chain - ## HITS:1  COG:no KEGG:E2348C_1074 NR:ns ## KEGG: E2348C_1074 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1     611       1     611     611    1178   99.0  0
MRTFTNLLYDICTVLGLFREGENPAHKRKSTNFEMHQKFWDQRYNAISRIIDAEGVYSQE
QRRIIYARYEHFYYMMNSYPVHSTLKSEFLRSYCLRTFGVIFLVVDIYNTYRPENDSAFY
YHIYNFLQKSYCPCLDHSDTESDEAAVKRYLREYLAELGFNKEDFHENGKLYALGKYTGT
IRRDNGKSKSLMKQYIMSIKNEYKKDYREKKLDKDELEKLLRNIDKFYNAFYSLSVLLDI
QRKTKILQSLAYYLRVLVRKGLWTHGLYGYAEQYLYDFTSLDTTPYAKKLLEMFYKFENS
AEGTLARYNVSLDDKSQEYIARLKDLVFNINEKNGCDDAYLKMIISHFGQLQNEAVHVTS
CYGTLAVYICLIRKNKINDVLHHYDDMERKGLFAELPSGYIRGALSLLRTALEVKVNRKN
IKYGSLFYWLDHVKAHQDAFIESIPLIDPVYKEGEIQYDANNFTLMRVIKMYNCMLEKIS
TKPYIAPPYITGLLDDVEKVLDKINILIDKEYVYDGKTLAEVIIENKVLSSRERKDTMIG
LFTGSKKYTLLQCVEKLGVLVHYVKSPVDEIKNVMMLYGDKAENRNRRRMIYDALTIICE
DDNRAKHPDLS
>gi|223713571|gb|ACDM01000027.1| GENE    22     18585  -     18872    152     95 aa, chain + ## HITS:1  COG:ECs1302 KEGG:ns NR:ns ## COG: ECs1302 COG3311 # Protein_GI_number: 15830556 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1      77       1      77      98     113   74.0  9e-26
MSNQTGQLDTPSRILRMAELTRLLGISRSTIYVKINPASKYHDPTFPKPIRLGSASVGWR
ASAIDEWLTLHTAPAWSEPENKQKELNDDDKTITP
>gi|223713571|gb|ACDM01000027.1| GENE    23     18847  -     20373    226    508 aa, chain + ## HITS:1  COG:no KEGG:E2348C_1073 NR:ns ## KEGG: E2348C_1073 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1     508       2     509     509     943   98.0  0
MTTKLSLPELDITKLPDRSQALLNEMHEETGISREILLSVMLTVKAASVQDTHEVELSGG
QRTSLQIFMCLSSASGSGKTSACAKLIAPVHETEEELHQAYIDDKKNYDRMMEMWTTDKK
ILERRYKKEMERSPENAAAARAALEKCIANKPVPPTQQVLIVNDATPEGIALKLSQSPSL
LLLSDEGGTILDKRFERKSALYNTLWSGQPVNVERASRPGFRLNDVRLTILILTQPVIFN
KFFTLTGDQIRGNGFLARLLFCEPGAIKIMTTEPHTAIPVVTQQCASCFRKKSFGSQIRD
SLRASRERRAKSKERICMTLSNAASRALERFHKENMDTVRQNPHMGTFEDIIVRKREQVV
RIAALLELEKDPDSTVITLESTNSAIYLIEFYFKHLIYKLESLREISPAEKLDKWLQKRI
ITTAGYIFQKSYILQYAPYALRKKCVLDEALDILAEQRKIRIDDNLVVYIGNTITPSELA
KKLNIPAFDAGVFICDHQNILKYHRNRL
>gi|223713571|gb|ACDM01000027.1| GENE    24     20543  -     21760    321    405 aa, chain - ## HITS:1  COG:ECs1299 KEGG:ns NR:ns ## COG: ECs1299 COG0582 # Protein_GI_number: 15830553 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1     397       1     397     400     766   97.0  0
MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
PEVSIAEAARAARIMREQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK
HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
AHGFCVANPVDVVGHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV
ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHILENIRGLHDEL
VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA
>gi|223713571|gb|ACDM01000027.1| GENE    25     22278  -     24554   1361    758 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 10     741      14     806     815 528  38 1e-149
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEA
FIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQA
AYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLA
RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM
ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ
VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING
LKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKT
VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAG
LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGY
VGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV
LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ
VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL
LFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>gi|223713571|gb|ACDM01000027.1| GENE    26     24585  -     24905    325    106 aa, chain - ## HITS:1  COG:ECs0967 KEGG:ns NR:ns ## COG: ECs0967 COG2127 # Protein_GI_number: 15830221 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     106       1     106     106     209  100.0  8e-55
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ
LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>gi|223713571|gb|ACDM01000027.1| GENE    27     25075  -     25317     64     80 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MSENIFAAAFRADETKPFGIVEPLNSTLFHASTSFANLIQVRWNKPGSERGLFKTSPTLE
IQFRELGRAVKHLTGDKGQV
>gi|223713571|gb|ACDM01000027.1| GENE    28     25228  -     25452    208     74 aa, chain + ## HITS:1  COG:ECs0966 KEGG:ns NR:ns ## COG: ECs0966 COG1278 # Protein_GI_number: 15830220 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      74       1      74      74     145  100.0  2e-35
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH
ASVIVPVEVEAAVA
>gi|223713571|gb|ACDM01000027.1| GENE    29     25525  -     27471    368    648 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 256     648       7     413     413 146  27 3e-34
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKA
TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQ
RLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG
EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVTGGTEPV
VNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMV
LADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRY
NNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVV
GEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGF
DSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGV
MNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQL
FLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>gi|223713571|gb|ACDM01000027.1| GENE    30     27468  -     28583   1233    371 aa, chain - ## HITS:1  COG:ybjY KEGG:ns NR:ns ## COG: ybjY COG0845 # Protein_GI_number: 16128846 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1     371      10     380     380     643   99.0  0
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR
KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA
ELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN
LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPG
QKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL
TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV
VIGEAKPGAAQ
>gi|223713571|gb|ACDM01000027.1| GENE    31     28740  -     29690    658    316 aa, chain + ## HITS:1  COG:ybjX KEGG:ns NR:ns ## COG: ybjX COG2990 # Protein_GI_number: 16128845 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     316      15     330     330     605  100.0  1e-173
MSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMN
ELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYL
NTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKR
TMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHI
YRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRY
EMLDAIQPQMATMFRG
>gi|223713571|gb|ACDM01000027.1| GENE    32     29687  -     31345   1026    552 aa, chain - ## HITS:1  COG:ybjD KEGG:ns NR:ns ## COG: ybjD COG3593 # Protein_GI_number: 16128844 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Escherichia coli K12 # 1     552       1     552     552    1072  100.0  0
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDF
WFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAE
DGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE
VTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNE
QRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLH
PIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTED
SRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQ
GFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMF
SRVLWLARGRAD
>gi|223713571|gb|ACDM01000027.1| GENE    33     31771  -     32466    783    231 aa, chain + ## HITS:1  COG:aqpZ KEGG:ns NR:ns ## COG: aqpZ COG0580 # Protein_GI_number: 16128843 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Escherichia coli K12 # 1     231       1     231     231     353  100.0  1e-97
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG
HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG
YGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPV
TNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>gi|223713571|gb|ACDM01000027.1| GENE    34     32961  -     33860    898    299 aa, chain + ## HITS:1  COG:ybjE KEGG:ns NR:ns ## COG: ybjE COG2431 # Protein_GI_number: 16128842 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     299      17     315     315     479  100.0  1e-135
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLA
ILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFA
IGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLI
GGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLI
PGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>gi|223713571|gb|ACDM01000027.1| GENE    35     34004  -     35656   1950    550 aa, chain + ## HITS:1  COG:ybjW KEGG:ns NR:ns ## COG: ybjW COG1151 # Protein_GI_number: 16128841 # Func_class: C Energy production and conversion # Function: 6Fe-6S prismane cluster-containing protein # Organism: Escherichia coli K12 # 1     550       3     552     552    1160  100.0  0
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINH
DVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQL
VSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIY
AQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATA
GKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQ
QVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMA
GFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFAT
SVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVN
DLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTV
EEDMKQLLSA
>gi|223713571|gb|ACDM01000027.1| GENE    36     35668  -     36636    938    322 aa, chain + ## HITS:1  COG:ybjV KEGG:ns NR:ns ## COG: ybjV COG1018 # Protein_GI_number: 16128840 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1     322       1     322     322     663  100.0  0
MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYALVSVRNSAETLRAYTIS
STPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKFLLLAAG
CGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEWRNYPVTLVAENNVTEGFIAG
RLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALGVTRFFKEKFFTPVAEAATSGLK
FTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTD
AEIAEGYVLACSCHPQGDLVLA
>gi|223713571|gb|ACDM01000027.1| GENE    37     36769  -     38487   1752    572 aa, chain + ## HITS:1  COG:poxB KEGG:ns NR:ns ## COG: poxB COG0028 # Protein_GI_number: 16128839 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1     572       1     572     572    1149  100.0  0
MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAE
AQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL
FRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAP
QPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKEHV
EYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGA
HSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQ
YLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQA
TEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGT
ELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKL
EQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>gi|223713571|gb|ACDM01000027.1| GENE    38     38524  -     39525   1183    333 aa, chain + ## HITS:1  COG:ybjU KEGG:ns NR:ns ## COG: ybjU COG2008 # Protein_GI_number: 16128838 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Escherichia coli K12 # 1     333       1     333     333     664  100.0  0
MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQ
ANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKI
KPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVVAYGCE
LKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIY
ALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTNMLFVRVGEENAAALGEYMKARNVL
INASPIVRLVTHLDVSREQLAEVAAHWRAFLAR
>gi|223713571|gb|ACDM01000027.1| GENE    39     39536  -     40966   1217    476 aa, chain + ## HITS:1  COG:ybjT KEGG:ns NR:ns ## COG: ybjT COG0702 # Protein_GI_number: 16128837 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1     476      11     486     486     958   99.0  0
MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQLANVSCHKVDLSWPDNL
PALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVPVKQLIFLSSLQAPPHEQS
DHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTT
PIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQFEHFMAVSGKRRWLIPIPLPTR
WISVWFLNVITSVPPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKEEEK
LVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKTSASLAALWQVVNQIGGKERYFFGNIL
WQTRALMDRAIGHKLAKGRPEREYLQTGDAVDSWKVIVVEPEKQLTLLFGMKAPGLGRLC
FSLEDKGDYRTIDVRAFWHPHGMPGLFYWLLMIPAHLFIFRGMAKQIARLAEQSTD
>gi|223713571|gb|ACDM01000027.1| GENE    40     41065  -     42078    936    337 aa, chain + ## HITS:1  COG:ybjS KEGG:ns NR:ns ## COG: ybjS COG0451 # Protein_GI_number: 16128836 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1     337      13     349     349     707  100.0  0
MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQA
KVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFD
YHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFI
PRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHR
TLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFT
LDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
>gi|223713571|gb|ACDM01000027.1| GENE    41     42075  -     42905    784    276 aa, chain - ## HITS:1  COG:ECs0953 KEGG:ns NR:ns ## COG: ECs0953 COG3023 # Protein_GI_number: 15830207 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Escherichia coli O157:H7 # 1     276       1     276     276     538   98.0  1e-153
MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL
ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL
ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPL
FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
>gi|223713571|gb|ACDM01000027.1| GENE    42     42902  -     43225    522    107 aa, chain - ## HITS:1  COG:ECs0952 KEGG:ns NR:ns ## COG: ECs0952 COG0393 # Protein_GI_number: 15830206 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     107       1     107     107     187  100.0  4e-48
MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREI
AFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR
>gi|223713571|gb|ACDM01000027.1| GENE    43     43351  -     43866    323    171 aa, chain + ## HITS:1  COG:no KEGG:B21_00876 NR:ns ## KEGG: B21_00876 # Name: ybjP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     171       1     171     171     342  100.0  4e-93
MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDI
TALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIP
LRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR
>gi|223713571|gb|ACDM01000027.1| GENE    44     44012  -     44812    246    266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 23     244       1     215     305 99  29 4e-20
MHNYSVKGTIFDLNSYQTASIRVSMSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGP
SGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPH
LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARAL
MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMEN
GHIVEQGDASCFTEPQTEAFKNYLSH
>gi|223713571|gb|ACDM01000027.1| GENE    45     44830  -     45561   1116    243 aa, chain + ## HITS:1  COG:artI KEGG:ns NR:ns ## COG: artI COG0834 # Protein_GI_number: 16128831 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1     243       1     243     243     475  100.0  1e-134
MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIVGFDVDLAQALCKEIDA
TCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTS
VDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQNGRIDGVFGDTAVVTE
WLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQKLNTALEKVKKDGTYETIYNKW
FQK
>gi|223713571|gb|ACDM01000027.1| GENE    46     45568  -     46284    847    238 aa, chain + ## HITS:1  COG:artQ KEGG:ns NR:ns ## COG: artQ COG4215 # Protein_GI_number: 16128830 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Escherichia coli K12 # 1     238       1     238     238     426  100.0  1e-119
MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWAGSALVTILRGLPEI
LVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVSPFLCGVIALSLLYAAYAS
QTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVS
LISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLLSQYILKRIDLRATRFERRPS
>gi|223713571|gb|ACDM01000027.1| GENE    47     46284  -     46952    941    222 aa, chain + ## HITS:1  COG:ECs0944 KEGG:ns NR:ns ## COG: ECs0944 COG4160 # Protein_GI_number: 15830198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Escherichia coli O157:H7 # 1     222       1     222     222     372  100.0  1e-103
MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVLVWLVRGYITLFTGTPL
LVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNSAAYTTQLFYGAIRAIPEG
QWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFKSTSLAYTITLMEVMGYSQLL
YGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAFERRN
>gi|223713571|gb|ACDM01000027.1| GENE    48     47243  -     47974    913    243 aa, chain + ## HITS:1  COG:artJ KEGG:ns NR:ns ## COG: artJ COG0834 # Protein_GI_number: 16128828 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1     243       1     243     243     482  100.0  1e-136
MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDLAKALCKQMQA
ECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTTPYYENSAVVIAKKDTYKT
FADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAFIDLKNGRIDGVFGDTAVVNE
WLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQW
FPQ
>gi|223713571|gb|ACDM01000027.1| GENE    49     48173  -     49300   1076    375 aa, chain - ## HITS:1  COG:ybjF KEGG:ns NR:ns ## COG: ybjF COG2265 # Protein_GI_number: 16128827 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1     375       1     375     375     767  100.0  0
MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK
MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG
ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM
EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL
FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV
PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF
PHTAHYEVLTLLVKQ
>gi|223713571|gb|ACDM01000027.1| GENE    50     49341  -     49829    376    162 aa, chain - ## HITS:1  COG:no KEGG:LF82_2664 NR:ns ## KEGG: LF82_2664 # Name: ybjO # Def: inner membrane protein YbjO # Organism: E.coli_LF82 # Pathway: not_defined # 1     162       1     162     162     290  100.0  1e-77
MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIFNTLGVRGIGEFIHRSV
QTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQITAASYLWAASLGYGYPEL
FSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQLQ
>gi|223713571|gb|ACDM01000027.1| GENE    51     49889  -     50734    755    281 aa, chain - ## HITS:1  COG:STM0880 KEGG:ns NR:ns ## COG: STM0880 COG1177 # Protein_GI_number: 16764242 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Salmonella typhimurium LT2 # 1     281       1     281     281     452   94.0  1e-127
MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELLRDDA
MMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGFAFMITAPLVMPDVITGLS
LLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGAT
PLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP
EINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQRARRG
>gi|223713571|gb|ACDM01000027.1| GENE    52     50731  -     51684    964    317 aa, chain - ## HITS:1  COG:potH KEGG:ns NR:ns ## COG: potH COG1176 # Protein_GI_number: 16128824 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli K12 # 1     317       1     317     317     553  100.0  1e-157
MSTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLFLLPFLIVFKISLAEMA
RAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTFCCLLIGYPL
AWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTI
LHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAALDLGARPLKTFFTVIVPLTKGG
IIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIV
PIMWFHKHQQKSVGEHG
>gi|223713571|gb|ACDM01000027.1| GENE    53     51694  -     52827   1472    377 aa, chain - ## HITS:1  COG:potG KEGG:ns NR:ns ## COG: potG COG3842 # Protein_GI_number: 16128823 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1     377      28     404     404     762   99.0  0
MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKST
LLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDK
LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL
DKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH
PTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPE
KIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWG
DEVRLCWEVDSCVVLTV
>gi|223713571|gb|ACDM01000027.1| GENE    54     52922  -     54034   1175    370 aa, chain - ## HITS:1  COG:potF KEGG:ns NR:ns ## COG: potF COG0687 # Protein_GI_number: 16128822 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1     370       1     370     370     734  100.0  0
MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYD
VFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLV
AKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFL
DAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICV
AIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL
RPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRT
RAWTKVKSGK
>gi|223713571|gb|ACDM01000027.1| GENE    55     54385  -     54861    445    158 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_0925 NR:ns ## KEGG: EcE24377A_0925 # Name: not_defined # Def: TPR repeat-containing protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     158      17     174     174     310  100.0  1e-83
MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM
AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV
RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH
>gi|223713571|gb|ACDM01000027.1| GENE    56     54949  -     55851   1507    300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15830186|ref|NP_308959.1| ribosomal protein S6 modification protein [Escherichia coli O157:H7 str. Sakai] # 1     300       1     300     300 585  99 1e-166
MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDA
VIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIA
HSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYI
KEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTM
ALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG
>gi|223713571|gb|ACDM01000027.1| GENE    57     55912  -     56634    719    240 aa, chain - ## HITS:1  COG:mdaA KEGG:ns NR:ns ## COG: mdaA COG0778 # Protein_GI_number: 16128819 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1     240       1     240     240     477  100.0  1e-135
MTPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREEL
VTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAE
SLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENS
YQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWATR
>gi|223713571|gb|ACDM01000027.1| GENE    58     56618  -     56905    249     95 aa, chain - ## HITS:1  COG:no KEGG:SSON_0835 NR:ns ## KEGG: SSON_0835 # Name: ybjC # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      95       1      95      95     137  100.0  2e-31
MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAA
VVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH
>gi|223713571|gb|ACDM01000027.1| GENE    59     57065  -     57322    483     85 aa, chain + ## HITS:1  COG:grxA KEGG:ns NR:ns ## COG: grxA COG0695 # Protein_GI_number: 16128817 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli K12 # 1      85       1      85      85     168  100.0  2e-42
MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVP
QIFVDQQHIGGYTDFAAWVKENLDA
>gi|223713571|gb|ACDM01000027.1| GENE    60     57352  -     57648    103     98 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_0827 NR:ns ## KEGG: ECIAI39_0827 # Name: ybjM # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1      98      28     125     125     170  100.0  1e-41
MKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTR
SFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
>gi|223713571|gb|ACDM01000027.1| GENE    61     57999  -     58277    276     92 aa, chain + ## HITS:1  COG:ECs0927 KEGG:ns NR:ns ## COG: ECs0927 COG2985 # Protein_GI_number: 15830181 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1      90       1      90     561     153   95.0  9e-38
MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTD
ALNLGFMLFIFCVGVEAGPNFFPFFFAMGKIT
>gi|223713571|gb|ACDM01000027.1| GENE    62     58277  -     59683   1533    468 aa, chain + ## HITS:1  COG:ECs0927 KEGG:ns NR:ns ## COG: ECs0927 COG2985 # Protein_GI_number: 15830181 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1     468      94     561     561     883  100.0  0
MLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLS
LALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLP
VIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALV
GYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNR
VIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIG
LMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFM
AGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGAR
TCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:54:46 2011
 Seq name: gi|223713570|gb|ACDM01000028.1| Escherichia sp. 4_1_40B cont1.28, whole genome shotgun sequence 
 Length of sequence - 3710 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 1, operones - 1 average op.length -  5.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS         81 -       299    158  ## B21_00857 hypothetical protein
                               -    Prom       329 -       388    4.1 
     2     1 Op  2   2/0.000   -    CDS        390 -      1490    753  ## COG3500 Phage protein D
     3     1 Op  3   2/0.000   -    CDS       1487 -      1972    460  ## COG3499 Phage protein U
     4     1 Op  4     .       -    CDS       1969 -      3381   1083  ## COG5283 Phage-related tail protein
     5     1 Op  5     .       -    CDS       3404 -      3658    251  ## COG3497 Phage tail sheath protein FI
Predicted protein(s)
>gi|223713570|gb|ACDM01000028.1| GENE     1        81  -       299    158     72 aa, chain - ## HITS:1  COG:no KEGG:B21_00857 NR:ns ## KEGG: B21_00857 # Name: ybl53 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      72      12      83      83     127  100.0  1e-28
MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHETFVRSIATPKESNPVQP
HPMKSGQVALSL
>gi|223713570|gb|ACDM01000028.1| GENE     2       390  -      1490    753    366 aa, chain - ## HITS:1  COG:STM2695 KEGG:ns NR:ns ## COG: STM2695 COG3500 # Protein_GI_number: 16766008 # Func_class: R General function prediction only # Function: Phage protein D # Organism: Salmonella typhimurium LT2 # 1     366       1     366     366     629   87.0  1e-180
MNFSSELLNKGNKTPAFSISIEGKDITTVLDNRLMGLTLTDNRGFEADQLDLELDDADGK
IVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLTIRARSADFRETLNTRREK
SWHKTTVGEVVKEIAARHKLKMALGKDLSDKPVEHIDQTNESDGSFLMRLARQYGAIASV
KNGNLLFIRQGQGKSASGKPLPVITIIRKDGDSHRFTLADRGAYTGVIASWLHTREPAKK
ESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVLNRTYANRSNAERAAKMQWERLQRG
VASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTLTHTVSPDNGFTTSLELEVKI
DDFEME
>gi|223713570|gb|ACDM01000028.1| GENE     3      1487  -      1972    460    161 aa, chain - ## HITS:1  COG:STM2696 KEGG:ns NR:ns ## COG: STM2696 COG3499 # Protein_GI_number: 16766009 # Func_class: R General function prediction only # Function: Phage protein U # Organism: Salmonella typhimurium LT2 # 1     160       1     160     161     267   86.0  5e-72
MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDMLTLSGVLMPEI
TGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTKTEFFRDGMPRRIEFTLSL
KRVDESLSDMFGDLSAQLNNLQDTATSALSDISKTVGGLLS
>gi|223713570|gb|ACDM01000028.1| GENE     4      1969  -      3381   1083    470 aa, chain - ## HITS:1  COG:STM2697 KEGG:ns NR:ns ## COG: STM2697 COG5283 # Protein_GI_number: 16766010 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Salmonella typhimurium LT2 # 107     470     582     935     935     457   73.0  1e-128
MKVAAVVAAVTVGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSSALSWL
AGAPLALLRRGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRA
VAVMFMNPLAALRGGLAAAGAVLRVLASGPLAMLRIALYAVSGLLGALLSPIGLVVTALA
GVALVVWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLL
TPVKSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAK
LPESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPYGQFGIVGENGPEIVN
GPANVTSRRNTAALAAVVAGMMGVAAAPAELPPLHPLALPAKGGEAMVSRAATVPPVQRI
EAPTQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA
>gi|223713570|gb|ACDM01000028.1| GENE     5      3404  -      3658    251     84 aa, chain - ## HITS:1  COG:STM2701 KEGG:ns NR:ns ## COG: STM2701 COG3497 # Protein_GI_number: 16766014 # Func_class: R General function prediction only # Function: Phage tail sheath protein FI # Organism: Salmonella typhimurium LT2 # 1      76      49     124     390     115   81.0  2e-26
MLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEDETTTNIIGAVTAEG
KKTGMKALLHGEKHYGGVAPLGGS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:54:53 2011
 Seq name: gi|223713569|gb|ACDM01000029.1| Escherichia sp. 4_1_40B cont1.29, whole genome shotgun sequence 
 Length of sequence - 18445 bp
 Number of predicted genes - 28, with homology - 28
 Number of transcription units - 11, operones - 6 average op.length -  3.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   3/0.000   -    CDS          2 -      1412    950  ## COG5301 Phage-related tail fibre protein
     2     1 Op  2   4/0.000   -    CDS       1409 -      2014    484  ## COG4385 Bacteriophage P2-related tail formation protein
     3     1 Op  3   4/0.000   -    CDS       2007 -      2915    931  ## COG3948 Phage-related baseplate assembly protein
     4     1 Op  4   4/0.000   -    CDS       2902 -      3261    381  ## COG3628 Phage baseplate assembly protein W
     5     1 Op  5     .       -    CDS       3258 -      3836    447  ## COG4540 Phage P2 baseplate assembly protein gpV
                               -    Prom      3904 -      3963    4.9 
                               +    Prom      4084 -      4143    5.5 
     6     2 Tu  1     .       +    CDS       4330 -      4746    191  ## B21_00846 hypothetical protein
                               +    Term      4856 -      4900    4.0 
     7     3 Tu  1     .       -    CDS       4688 -      5005    266  ## B21_00845 hypothetical protein
     8     4 Tu  1     .       -    CDS       5127 -      5585    353  ## E2348C_0827 predicted tail protein
     9     5 Tu  1     .       +    CDS       5463 -      5993    305  ## COG5518 Bacteriophage capsid portal protein
    10     6 Op  1     .       -    CDS       6015 -      6872    181  ## SARI_03986 hypothetical protein
    11     6 Op  2     .       -    CDS       6882 -      7127    153  ## gi|256023542|ref|ZP_05437407.1| hypothetical protein E4_09223
                               +    Prom      7280 -      7339    3.2 
    12     7 Op  1     .       +    CDS       7433 -      8434    232  ## t4325 hypothetical protein
    13     7 Op  2     .       +    CDS       8434 -      9513    380  ## SPA2585 hypothetical protein
    14     7 Op  3     .       +    CDS       9500 -     10183     92  ## Bcen2424_0192 hypothetical protein
                               +    Term     10240 -     10283   12.1 
    15     8 Op  1     .       -    CDS      10279 -     10512    294  ## LF82_p406 hypothetical protein
    16     8 Op  2     .       -    CDS      10523 -     10711    128  ## ECS88_2839 hypothetical protein
                               -    Prom     10755 -     10814    3.9 
                               -    Term     10771 -     10814   -0.9 
    17     9 Op  1     .       -    CDS      10863 -     13277   1470  ## LF82_p407 replication protein for prophage
    18     9 Op  2   1/0.000   -    CDS      13274 -     14131    437  ## COG0338 Site-specific DNA methylase
    19     9 Op  3     .       -    CDS      14128 -     14355    273  ## COG1734 DnaK suppressor protein
    20     9 Op  4     .       -    CDS      14355 -     14588    341  ## t3407 hypothetical protein
    21     9 Op  5     .       -    CDS      14656 -     14997    152  ## ECS88_2845 hypothetical protein
    22     9 Op  6     .       -    CDS      15020 -     15244    129  ## ECS88_2846 hypothetical protein
    23     9 Op  7     .       -    CDS      15115 -     15411     78  ## ECS88_2847 conserved hypothetical protein fil of phage origin
    24     9 Op  8     .       -    CDS      15419 -     15928    439  ## c0936 hypothetical protein
    25     9 Op  9     .       -    CDS      15993 -     16196    227  ## c0935 putative regulator for prophage
                               -    Prom     16279 -     16338    3.9 
                               +    Prom     16154 -     16213    3.5 
    26    10 Op  1     .       +    CDS      16450 -     16911     58  ## COG2932 Predicted transcriptional regulator
    27    10 Op  2     .       +    CDS      16927 -     17118    106  ## ECBD_2774 hypothetical protein
                               +    Prom     17227 -     17286    3.7 
    28    11 Tu  1     .       +    CDS      17307 -     18383    674  ## COG0582 Integrase
Predicted protein(s)
>gi|223713569|gb|ACDM01000029.1| GENE     1         2  -      1412    950    470 aa, chain - ## HITS:1  COG:STM2706 KEGG:ns NR:ns ## COG: STM2706 COG5301 # Protein_GI_number: 16766019 # Func_class: R General function prediction only # Function: Phage-related tail fibre protein # Organism: Salmonella typhimurium LT2 # 1     259       1     259     524     385   83.0  1e-106
MSTKFYTLLTDIGAAKLASAAALGVPLKITHMAVGDGGGTLPTPDAKQTALVNEKRRAAL
NMLYIDPQNSSQIIAEQVIPENEGGWWIREVGLFDESGALIAVGNCPESYKPQLAEGSGR
TQTVRMVLITSSTGNIILKIDPAVVLATRKYVDDKALELKVYVDDLIAKHLAALDPHSQY
APKESPTFTGTPKAPTPAAGNNTTQLATTAFVQAALTALINGAPATLDTLKEIAAAINND
PKFSTTINNALALKAPLSNPALTGTPTAPTAAQSVNNTQIATTAFVKSAIAAMVGSAPAA
LDTLNELAAALGNDPNFATTMLNALAGKQPLDNTLTNLSGKDVAGLLTYLGLGEGSALPV
GVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKVYPTNKLPDLRGEFIRGWDDGRGVDAG
RQLLSSQGDAIRNIEGFADGGIGMSFDAIRGAFYDAGTRSARMPNNTTTI
>gi|223713569|gb|ACDM01000029.1| GENE     2      1409  -      2014    484    201 aa, chain - ## HITS:1  COG:STM2707 KEGG:ns NR:ns ## COG: STM2707 COG4385 # Protein_GI_number: 16766020 # Func_class: R General function prediction only # Function: Bacteriophage P2-related tail formation protein # Organism: Salmonella typhimurium LT2 # 1     201       1     201     201     389   92.0  1e-108
MNSLLPPGSTSLERRLAQTCSGISDLQVPLRDLWNPTTCPVSFLPYLAWAFSVDRWDEDW
TESVKRQVVKDAFYIHQHKGTTSAVRRVVEPFGFLIRIIEWWQTGETPGTFRLDIGVQDQ
GITEDTYLELERLISDAKPCSRHMIGMSINLQTSGPHWVGAASYLGEEITIYPYINETII
SGGTAHEGGAVHVIDTMRVNP
>gi|223713569|gb|ACDM01000029.1| GENE     3      2007  -      2915    931    302 aa, chain - ## HITS:1  COG:STM2708 KEGG:ns NR:ns ## COG: STM2708 COG3948 # Protein_GI_number: 16766021 # Func_class: R General function prediction only # Function: Phage-related baseplate assembly protein # Organism: Salmonella typhimurium LT2 # 1     302       1     302     302     462   89.0  1e-130
MAVIDLSQLPAPQIVDVPDFETLLAERKAEFVALHPKDEQEAVIRTLELESEPVTKLLQE
NAYRELLLRQRINEAAQAVMVAYAMGGDLDQLAANYNVKRLTVTPADDDAVPPVAAVMES
DEALRLRVPAAFEGLSVAGPTAAYEFHARSADGRVADASATSPAPAEVVLTVLSREGDGT
AEKDLLDVVEKALNSENVRPVADRLTVRSAEIIPYRVEATIFLYPGPEAEPVMAAAKASL
QKYIASQTRLGRDIRRSAIFAALHVEGVQRVELASPLADVVLNKTQAASCTQWSVTNGGT
DE
>gi|223713569|gb|ACDM01000029.1| GENE     4      2902  -      3261    381    119 aa, chain - ## HITS:1  COG:STM2709 KEGG:ns NR:ns ## COG: STM2709 COG3628 # Protein_GI_number: 16766022 # Func_class: R General function prediction only # Function: Phage baseplate assembly protein W # Organism: Salmonella typhimurium LT2 # 1     118       1     118     119     188   83.0  3e-48
MTLYSGMNNTSGKAITDIDHLRQSVRDILLTPQGSRIARREYGSLLSALIDQPQNPALRL
QVMSAVYVALSRWEPRLTLDSITINSDFDGSMVVELTGRRNNGVPVSLSVSTGAENGSD
>gi|223713569|gb|ACDM01000029.1| GENE     5      3258  -      3836    447    192 aa, chain - ## HITS:1  COG:STM2710 KEGG:ns NR:ns ## COG: STM2710 COG4540 # Protein_GI_number: 16766023 # Func_class: R General function prediction only # Function: Phage P2 baseplate assembly protein gpV # Organism: Salmonella typhimurium LT2 # 1     192       1     192     192     325   85.0  4e-89
MNAQLTEIMRLITNLIRIGVVTEVDRENWLCRVKTGDLETNWINWLTLRAGNARTWWRPS
EGEQVVLLSLGGNLETAFALPAIYSNQFAPPSTSADACVTEHPDGGWFEYEPATGRWYVR
GIKSMVIEAADNITLKTSEFMLEADRTRINSEVVINGGVTQGGGAMSSNGIVVDAHQHTG
VLKGGDTTGGPV
>gi|223713569|gb|ACDM01000029.1| GENE     6      4330  -      4746    191    138 aa, chain + ## HITS:1  COG:no KEGG:B21_00846 NR:ns ## KEGG: B21_00846 # Name: ybl42 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     138     131     268     268     258   98.0  4e-68
MSKKLATAATILTTPDWEISKDDCEESSSASTEKYKSLTIEHKEILCKLLTTDEGNAYID
EEVKNFVKDKFFIYSFAPTTIFILLWISLGFILTIHYSKKVRKYILTEQKNAIHWAYGEF
KTEGIYSIYQELERKTHH
>gi|223713569|gb|ACDM01000029.1| GENE     7      4688  -      5005    266    105 aa, chain - ## HITS:1  COG:no KEGG:B21_00845 NR:ns ## KEGG: B21_00845 # Name: ybl41 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     105      44     148     148     169   98.0  2e-41
MQRNPDGSSYEPRKVTARSKKGRIKRQMFAKLRTTKYLKTAASADSASVQFEGKVQRIAR
VHHYGLRDRVSRKGPEVRYAERRLLGLNGESYVLTLDILNRFLLS
>gi|223713569|gb|ACDM01000029.1| GENE     8      5127  -      5585    353    152 aa, chain - ## HITS:1  COG:no KEGG:E2348C_0827 NR:ns ## KEGG: E2348C_0827 # Name: not_defined # Def: predicted tail protein # Organism: E.coli_0127 # Pathway: not_defined # 57     152      48     143     143     192  100.0  3e-48
MTAIDVVFTPEQRSGLVQQGGRNGGQIFRQAVNFLVQVRLHQVKDTAFSELVGLRGYTLN
VVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVCDISLNLQLT
ERVLVSTDGSVSSVEAVAEPDEPEEMWTVKRG
>gi|223713569|gb|ACDM01000029.1| GENE     9      5463  -      5993    305    176 aa, chain + ## HITS:1  COG:STM2723 KEGG:ns NR:ns ## COG: STM2723 COG5518 # Protein_GI_number: 16766036 # Func_class: R General function prediction only # Function: Bacteriophage capsid portal protein # Organism: Salmonella typhimurium LT2 # 1     176     168     343     346     335   92.0  4e-92
MEPDLNQEIYGLPEYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNN
IRQAMKSAKGPGNFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRV
PPQMMGIMPSNVGGFGDVEKASKVFVRNELIPLQKRIKEINEWLSDEIISFQPYEL
>gi|223713569|gb|ACDM01000029.1| GENE    10      6015  -      6872    181    285 aa, chain - ## HITS:1  COG:no KEGG:SARI_03986 NR:ns ## KEGG: SARI_03986 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 6     273      13     268     280     110   27.0  4e-23
MFSDKQKQQIGNNSYAIQAGNNVNVSGMSFSEVRELFNILFENQFPKLKDVAYAAAQENA
KDFEERVVSDLTKNVDRLIIDKFCDPDVQATLTEALKSSARKGKKANMDVLSQLLVERVS
NNNDDFRDIVLTEAVTVVPKLTQQQISLITIVFLLKNVEIKDPVNGVRLDLLEHNFRNFE
SMYTNGFNLSQAQIYHIQYAGACSWNTFLGMDVEDYFMSKYPTDIKDKSAYISNLKLVAP
HVSAFLEKFSKSNYQGIELTSVGQAIALAVFSRYVGRLDYNIWLK
>gi|223713569|gb|ACDM01000029.1| GENE    11      6882  -      7127    153     81 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256023542|ref|ZP_05437407.1| ## NR: gi|256023542|ref|ZP_05437407.1| hypothetical protein E4_09223 [Escherichia sp. 4_1_40B] # 1      81       1      81      81     144  100.0  3e-33
MKIFAIVITCMLASIAGLWLYMDPGFDSIVAFLAAVSALAGLLITTKNKYNSMSQSVGDN
STAVQARGDIKIDCINTGDKK
>gi|223713569|gb|ACDM01000029.1| GENE    12      7433  -      8434    232    333 aa, chain + ## HITS:1  COG:no KEGG:t4325 NR:ns ## KEGG: t4325 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 3     306       2     326     354     207   37.0  4e-52
MGGETSAIQRVAGKISDDIFSVFKWDRAARADMNWDCCQEAHSKKTHPSDVVFFYIDPYE
EEMVYLNTDLKSYAEGTIGKKIVEGALTSLALATECANVSEEWRLKYVHDDSLGYNVRGL
LFLYNHDNLYDKDFYENITKKLDHSSINCPPNIKLHLLDPYKISDLINISSDITKLIGSG
KLPQPDKFTYYYPDLSLTRIKHPINQTTPATIELLTSPYIIIKHEAFSWLRDKNPEGYVV
YYNQPGDSVDEFVYFFDMLSTYQILTEGKPIVLRHCHIHPNENAIHHFERAKKKYSTDWL
LGEDERLFLKIDFDKTDKIVVEYNLEQIGMEQR
>gi|223713569|gb|ACDM01000029.1| GENE    13      8434  -      9513    380    359 aa, chain + ## HITS:1  COG:no KEGG:SPA2585 NR:ns ## KEGG: SPA2585 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi # Pathway: not_defined # 3     349       2     351     354     130   28.0  9e-29
MAKKLYFATDKNIYDALHHKRITAAKLHELLLNRGVFLSPELDKEILIEEISKLPHGFNE
LEHIKKLVKTYDPRESTTSVSFQTSTNQAELKSAAEALKKTCSPSKGQSLNIVAKKDGSL
TVEYKYEEIDLSKTALRQIDKRNVIIELRPGADKVEVRMPQNPEAKKVIESLQNELSKIK
SEPIERFEISLLAITDPTLRSQFFQELMNGLRGYETDDVTKVELNRSTDASEDEDKEETI
DTGFVKKAVLNGEGVNSSAIFSQLHEKGYYIGRIAWSSKPTSGIGDRINVEAFFKDSEKC
CDFAYQIKGINNQKEDGFNVTIRAATAQEKKHISELIESAAENAYNIIIGSEVNEDEKG
>gi|223713569|gb|ACDM01000029.1| GENE    14      9500  -     10183     92    227 aa, chain + ## HITS:1  COG:no KEGG:Bcen2424_0192 NR:ns ## KEGG: Bcen2424_0192 # Name: not_defined # Def: hypothetical protein # Organism: B.cenocepacia_HI2424 # Pathway: not_defined # 2     206       3     206     222      88   25.0  2e-16
MKKVKWLKLNIRLEFETAVRRLSLDSFTEDKGKGFIFDKIRHDFANGRFVERIVYHDKIL
SFDGSETTVERIEYRTTNFSVALDSLPVMQITNPPRTLKPFSQALVKNLGLGVSLEEIDI
NPIDWLNEISSSVNINLTQLDISRVRVSDYATAKMQIIGSNDLRKYYKEELEGKKIRIDR
LVCSVNSLEYSGKLKITNSGLAYIDVRNENEFTKIVFDTLKKVTLQS
>gi|223713569|gb|ACDM01000029.1| GENE    15     10279  -     10512    294     77 aa, chain - ## HITS:1  COG:no KEGG:LF82_p406 NR:ns ## KEGG: LF82_p406 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_LF82 # Pathway: not_defined # 1      77      25     101     101     133   97.0  2e-30
MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTAIRIRKGSANGVELSGLKLDEDKK
RVMEIMQQVWEDDSWLH
>gi|223713569|gb|ACDM01000029.1| GENE    16     10523  -     10711    128     62 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2839 NR:ns ## KEGG: ECS88_2839 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      62      35      96      96     120  100.0  2e-26
MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDELMAKIRTHEYNRSMDV
IS
>gi|223713569|gb|ACDM01000029.1| GENE    17     10863  -     13277   1470    804 aa, chain - ## HITS:1  COG:no KEGG:LF82_p407 NR:ns ## KEGG: LF82_p407 # Name: not_defined # Def: replication protein for prophage # Organism: E.coli_LF82 # Pathway: not_defined # 1     804       1     804     804    1585   98.0  0
MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALSNLIALYAADNEQEHLR
REALSDQVWERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHI
SKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHVGLDGLL
ILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVI
PPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKK
ASPYVSYEAVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMAC
VKGLELIAEMRSDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRK
AMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTG
PRFKSELINPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRV
QQFRFFGIPGRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIM
KQGGVLVPRKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAV
DVQEAAADQGACAPWTRGNNCPLAENLNQQDKDKSADGDTRTDITRMDDKELHDYLHSMS
KKERRELAARLRLVKLKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIP
SGAGLRIFYRNQRLQEDDKWRNLY
>gi|223713569|gb|ACDM01000029.1| GENE    18     13274  -     14131    437    285 aa, chain - ## HITS:1  COG:STM2730 KEGG:ns NR:ns ## COG: STM2730 COG0338 # Protein_GI_number: 16766042 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Salmonella typhimurium LT2 # 1     285       1     283     285     422   72.0  1e-118
MSTILKWAGNKTAIMSELKKHLPAGPRLVEPFAGSCAVMMETEYPSYLVADINPDLINLY
KKVAADCESFISRARVLFEIANRGGAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYRGL
CRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVVYCDP
PYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFTHHYIKV
KRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA
>gi|223713569|gb|ACDM01000029.1| GENE    19     14128  -     14355    273     75 aa, chain - ## HITS:1  COG:STM2731 KEGG:ns NR:ns ## COG: STM2731 COG1734 # Protein_GI_number: 16766043 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Salmonella typhimurium LT2 # 1      75       1      75      75     124   90.0  5e-29
MADAMDLVQQRVEEERQRHIRAARAKTPGVSRVLCIECEAPIPPARRRAIPGVQLCITCQ
EIAELKGKHYNGGAV
>gi|223713569|gb|ACDM01000029.1| GENE    20     14355  -     14588    341     77 aa, chain - ## HITS:1  COG:no KEGG:t3407 NR:ns ## KEGG: t3407 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 1      77       1      77      77     104   96.0  8e-22
MRNIETLSTKTGPDDAGLNILLTEARLEERRARAEAMAARLDSLACHITSRQLNHVEAAE
LLRVAAEAIQNEAQEIH
>gi|223713569|gb|ACDM01000029.1| GENE    21     14656  -     14997    152    113 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2845 NR:ns ## KEGG: ECS88_2845 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     113       1     113     113     191   94.0  5e-48
MAINGAAATVPLSPGERLNGLNHIAELRAKVFGLNIESELERFIKDMRDPRDINYERNKR
ALAAIFFIAKIPAERHSISINELTTDEKRELIKVMNHLRAVVSLFPRRLAMPN
>gi|223713569|gb|ACDM01000029.1| GENE    22     15020  -     15244    129     74 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2846 NR:ns ## KEGG: ECS88_2846 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      74       1      74      74     134   98.0  7e-31
MYAAESEVVYQFRYRGESYSVPEDDLLCCYPSLSGDGSYFFTLKDGTFLRGEQVKETIRK
NVSPLERYRKNKER
>gi|223713569|gb|ACDM01000029.1| GENE    23     15115  -     15411     78     98 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2847 NR:ns ## KEGG: ECS88_2847 # Name: fil # Def: conserved hypothetical protein fil of phage origin # Organism: E.coli_S88 # Pathway: not_defined # 1      98      11     108     108     181   94.0  8e-45
MLTKEPSFASLLVKQSPAMHYGHGWITGEDGKRWHPCHSQDELLSELTTRKRRKSKCMRQ
KVKWFISFVTEGRVIQYLKMICSVAIRHCRAMAVTFSR
>gi|223713569|gb|ACDM01000029.1| GENE    24     15419  -     15928    439    169 aa, chain - ## HITS:1  COG:no KEGG:c0936 NR:ns ## KEGG: c0936 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     169      19     187     187     327  100.0  1e-88
MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLNPAQPHLLTAPEIWLLT
DLTEDSTLVDGFLAQIHCLPCVPINEVAKEKLPHYVMSATAEIGRVAAGAVSGDVKTSAG
RRDAISSINSVTRLMALAAVSLQARLQANPAMASAVDTVTGLGASFGLL
>gi|223713569|gb|ACDM01000029.1| GENE    25     15993  -     16196    227     67 aa, chain - ## HITS:1  COG:no KEGG:c0935 NR:ns ## KEGG: c0935 # Name: coxT # Def: putative regulator for prophage # Organism: E.coli_CFT073 # Pathway: not_defined # 1      66       1      66      73     113   96.0  2e-24
MTPNISITLNTPHVTIERYSELTGLSIDTINDMLADGRLPRHRLRKDKKREKVMINLAAL
TVDALSA
>gi|223713569|gb|ACDM01000029.1| GENE    26     16450  -     16911     58    153 aa, chain + ## HITS:1  COG:STM2738 KEGG:ns NR:ns ## COG: STM2738 COG2932 # Protein_GI_number: 16766050 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1     147      42     206     210     104   33.0  6e-23
MATRYMRDIFPADWVIQCALETGTSLNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKD
GFYIFDKGFLPSTFKKPFVITDNNSEFICDKEFDDIRDGKWVISIDGEITIRDITRLPGG
RIFVEGGNRAFECKIEDIEIIGKIISLTVKYVK
>gi|223713569|gb|ACDM01000029.1| GENE    27     16927  -     17118    106     63 aa, chain + ## HITS:1  COG:no KEGG:ECBD_2774 NR:ns ## KEGG: ECBD_2774 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      63       1      63      63     107   98.0  1e-22
MLGKVFFVVLSCSLLLNPLTTYARNYPCSGKKGGVSHCTSDGKFVCNDGTISKSKKICTK
NSR
>gi|223713569|gb|ACDM01000029.1| GENE    28     17307  -     18383    674    358 aa, chain + ## HITS:1  COG:STM2739 KEGG:ns NR:ns ## COG: STM2739 COG0582 # Protein_GI_number: 16766051 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1     336       1     337     341     369   53.0  1e-102
MAVRKLTTGKWLCECYPAGRSGRRVRKQFVTKGEALAFERHTMEETEAKPWLGESVDRRT
LKDVVELWFKLHGKSLTAGQHVYDKLLLMVDALGNPLATDLTSKMFAHYRDKRLTGEIYF
SEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQI
VELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPIS
KELYEEIMALDGFNFFTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILA
LQKILGHHDIKMTMRYAHLAPDHLETALRFNPLATLPSGDKVATKWRQRLALPRNNHH
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:56:12 2011
 Seq name: gi|223713568|gb|ACDM01000030.1| Escherichia sp. 4_1_40B cont1.30, whole genome shotgun sequence 
 Length of sequence - 86364 bp
 Number of predicted genes - 79, with homology - 78
 Number of transcription units - 46, operones - 17 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         20 -       556    479  ## COG3226 Uncharacterized protein conserved in bacteria
                               -    Prom       618 -       677    2.0 
     2     2 Op  1   2/0.682   +    CDS        640 -      1848   1062  ## COG0477 Permeases of the major facilitator superfamily
     3     2 Op  2     .       +    CDS       1848 -      2663    838  ## COG0561 Predicted hydrolases of the HAD superfamily
     4     2 Op  3     .       +    CDS       2755 -      3033    216  ## ECO103_0887 hypothetical protein
                               +    Term      3039 -      3083    5.2 
                               -    Term      3030 -      3068    2.2 
     5     3 Tu  1     .       -    CDS       3074 -      4306   1299  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom      4409 -      4468    7.1 
     6     4 Op  1   4/0.455   +    CDS       4591 -      5187    522  ## COG0671 Membrane-associated phospholipid phosphatase
     7     4 Op  2     .       +    CDS       5245 -      6003    671  ## COG1349 Transcriptional regulators of sugar metabolism
                               -    Term      6002 -      6038    6.3 
     8     5 Tu  1     .       -    CDS       6050 -      7273   1265  ## COG1686 D-alanyl-D-alanine carboxypeptidase
                               -    Prom      7293 -      7352    5.1 
                               +    Prom      7252 -      7311    3.8 
     9     6 Tu  1     .       +    CDS       7499 -      8125    660  ## COG0625 Glutathione S-transferase
    10     7 Tu  1     .       -    CDS       8122 -      9093    867  ## COG2133 Glucose/sorbosone dehydrogenases
                               -    Prom      9258 -      9317    4.4 
                               -    Term      9304 -      9343    5.0 
    11     8 Tu  1     .       -    CDS       9348 -      9731    224  ## EcE24377A_0907 biofilm formation regulatory protein BssR
                               -    Prom      9796 -      9855    4.5 
                               +    Prom      9850 -      9909    4.9 
    12     9 Tu  1     .       +    CDS       9944 -     11269   1844  ## PROTEIN SUPPORTED gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein
                               -    Term     11262 -     11305    7.7 
    13    10 Op  1   6/0.182   -    CDS      11316 -     12644   1035  ## COG2199 FOG: GGDEF domain
    14    10 Op  2   3/0.636   -    CDS      12652 -     15000   1584  ## COG2200 FOG: EAL domain
                               -    Prom     15080 -     15139    5.6 
                               -    Term     15069 -     15103   -1.0 
    15    11 Op  1  49/0.000   -    CDS      15178 -     16089    810  ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
    16    11 Op  2  38/0.000   -    CDS      16092 -     17012    983  ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
    17    11 Op  3  11/0.000   -    CDS      17030 -     18568   1653  ## COG0747 ABC-type dipeptide transport system, periplasmic component
    18    11 Op  4   3/0.636   -    CDS      18588 -     20459    841  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
    19    11 Op  5     .       -    CDS      20446 -     21411   1047  ## COG1446 Asparaginase
                               -    Prom     21479 -     21538    7.5 
                               +    Prom     21419 -     21478    2.9 
    20    12 Op  1   9/0.000   +    CDS      21615 -     22850   1259  ## COG0303 Molybdopterin biosynthesis enzyme
    21    12 Op  2     .       +    CDS      22850 -     23599    863  ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
                               +    Term     23760 -     23799    0.1 
                               -    Term     23612 -     23640    0.5 
    22    13 Tu  1     .       -    CDS      23675 -     24343    842  ## COG0176 Transaldolase
                               -    Prom     24428 -     24487    3.0 
                               +    Prom     24324 -     24383    3.6 
    23    14 Op  1  11/0.000   +    CDS      24468 -     25367   1009  ## COG1180 Pyruvate-formate lyase-activating enzyme
    24    14 Op  2   2/0.682   +    CDS      25373 -     27805   2915  ## COG1882 Pyruvate-formate lyase
                               +    Prom     27834 -     27893    3.8 
    25    15 Tu  1     .       +    CDS      27951 -     28766    922  ## COG0561 Predicted hydrolases of the HAD superfamily
                               +    Term     28775 -     28805    2.6 
                               +    Prom     28815 -     28874    3.9 
    26    16 Tu  1     .       +    CDS      28918 -     30183   1057  ## B21_00805 hypothetical protein
                               +    Term     30339 -     30375    2.4 
                               -    Term     30293 -     30328   -0.7 
    27    17 Tu  1     .       -    CDS      30424 -     31992   2057  ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains
                               -    Prom     32135 -     32194    4.1 
                               +    Prom     32120 -     32179    4.9 
    28    18 Tu  1     .       +    CDS      32235 -     33155   1097  ## COG1376 Uncharacterized protein conserved in bacteria
                               +    Term     33171 -     33212    3.0 
                               -    Term     33163 -     33195    3.1 
    29    19 Op  1   4/0.455   -    CDS      33214 -     34332   1044  ## COG0471 Di- and tricarboxylate transporters
    30    19 Op  2     .       -    CDS      34329 -     34796    550  ## COG1321 Mn-dependent transcriptional regulator
                               -    Prom     34842 -     34901    4.1 
                               +    Prom     34855 -     34914    3.9 
    31    20 Tu  1     .       +    CDS      34982 -     35110     71  ## SbBS512_E2532 hypothetical protein
                               +    Prom     35207 -     35266    2.2 
    32    21 Tu  1     .       +    CDS      35382 -     36965   1522  ## COG2194 Predicted membrane-associated, metal-dependent hydrolase
                               +    Term     36976 -     37003   -0.9 
                               -    Term     36948 -     37010   10.7 
    33    22 Tu  1     .       -    CDS      37014 -     37529    561  ## COG3637 Opacity protein and related surface antigens
                               -    Prom     37555 -     37614    4.6 
    34    23 Tu  1     .       +    CDS      37882 -     38769    953  ## COG5006 Predicted permease, DMT superfamily
                               +    Term     38778 -     38820   10.1 
                               +    Prom     38969 -     39028    4.8 
    35    24 Tu  1     .       +    CDS      39068 -     39571    641  ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)
                               +    Term     39607 -     39650    9.5 
                               +    Prom     39869 -     39928    4.1 
    36    25 Op  1  31/0.000   +    CDS      39975 -     40721   1005  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
    37    25 Op  2  34/0.000   +    CDS      40860 -     41519    944  ## COG0765 ABC-type amino acid transport system, permease component
    38    25 Op  3   3/0.636   +    CDS      41516 -     42238    595  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               +    Prom     42412 -     42471    5.6 
    39    26 Tu  1     .       +    CDS      42499 -     44724   2041  ## COG0668 Small-conductance mechanosensitive channel
    40    27 Tu  1     .       -    CDS      44721 -     45647    779  ## COG3129 Predicted SAM-dependent methyltransferase
                               -    Prom     45754 -     45813    5.3 
                               +    Prom     45762 -     45821    8.7 
    41    28 Tu  1     .       +    CDS      45923 -     46183    241  ## ECIAI1_0844 hypothetical protein
                               +    Term     46198 -     46231    2.2 
                               +    Prom     46272 -     46331    3.7 
    42    29 Op  1   2/0.682   +    CDS      46448 -     48730   2038  ## COG4774 Outer membrane receptor for monomeric catechols
                               +    Term     48740 -     48765   -0.5 
    43    29 Op  2   1/0.864   +    CDS      48772 -     49449    688  ## COG3128 Uncharacterized iron-regulated protein
    44    29 Op  3     .       +    CDS      49523 -     49789    323  ## COG1734 DnaK suppressor protein
                               +    Prom     49828 -     49887    2.5 
    45    30 Tu  1     .       +    CDS      50054 -     50314    280  ## EC55989_0846 hypothetical protein
                               +    Term     50515 -     50548    5.2 
                               -    Term     50320 -     50378    9.1 
    46    31 Tu  1     .       -    CDS      50543 -     51628   1335  ## COG2055 Malate/L-lactate dehydrogenases
                               -    Prom     51655 -     51714    3.6 
                               -    Term     51723 -     51756    3.0 
    47    32 Op  1   4/0.455   -    CDS      51769 -     52731    968  ## COG0547 Anthranilate phosphoribosyltransferase
    48    32 Op  2     .       -    CDS      52759 -     54909   2075  ## COG1199 Rad3-related DNA helicases
                               -    Prom     54936 -     54995    2.5 
                               +    Prom     54882 -     54941    2.6 
    49    33 Tu  1     .       +    CDS      55062 -     55511    434  ## COG3236 Uncharacterized protein conserved in bacteria
                               +    Term     55666 -     55702    2.4 
    50    34 Tu  1     .       -    CDS      55743 -     57107   1433  ## COG0513 Superfamily II DNA and RNA helicases
                               -    Prom     57226 -     57285    2.9 
                               +    Prom     57209 -     57268    3.5 
    51    35 Op  1  15/0.000   +    CDS      57336 -     58007    734  ## COG1309 Transcriptional regulator
    52    35 Op  2  10/0.000   +    CDS      58010 -     59005   1289  ## COG0845 Membrane-fusion protein
    53    35 Op  3  45/0.000   +    CDS      58998 -     60734    343  ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16
    54    35 Op  4  22/0.000   +    CDS      60727 -     61860   1442  ## COG0842 ABC-type multidrug transport system, permease component
    55    35 Op  5     .       +    CDS      61871 -     62977   1190  ## COG0842 ABC-type multidrug transport system, permease component
    56    36 Tu  1     .       -    CDS      62939 -     63349    485  ## G2583_1019 inner membrane protein YbhQ
                               -    Prom     63440 -     63499    3.0 
                               +    Prom     63316 -     63375    1.5 
    57    37 Op  1   8/0.000   +    CDS      63482 -     64243    616  ## COG3568 Metal-dependent hydrolase
    58    37 Op  2   5/0.273   +    CDS      64240 -     65481   1174  ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes
    59    37 Op  3     .       +    CDS      65481 -     66437   1161  ## COG0392 Predicted integral membrane protein
    60    38 Op  1     .       -    CDS      66473 -     67186    298  ## COG0670 Integral membrane protein, interacts with FtsH
    61    38 Op  2     .       -    CDS      67213 -     67305     63  ## 
                               -    Term     67341 -     67371    1.0 
    62    38 Op  3   5/0.273   -    CDS      67391 -     68095    737  ## COG0670 Integral membrane protein, interacts with FtsH
                               -    Prom     68121 -     68180    1.9 
    63    39 Op  1  21/0.000   -    CDS      68232 -     68684    631  ## COG0314 Molybdopterin converting factor, large subunit
    64    39 Op  2  11/0.000   -    CDS      68686 -     68931    310  ## COG1977 Molybdopterin converting factor, small subunit
    65    39 Op  3  11/0.000   -    CDS      68924 -     69409    682  ## COG0315 Molybdenum cofactor biosynthesis enzyme
    66    39 Op  4   6/0.182   -    CDS      69412 -     69924    586  ## COG0521 Molybdopterin biosynthesis enzymes
    67    39 Op  5     .       -    CDS      69946 -     70935    709  ## COG2896 Molybdenum cofactor biosynthesis enzyme
                               -    Prom     71085 -     71144    5.0 
                               +    Prom     71120 -     71179    3.7 
    68    40 Tu  1     .       +    CDS      71332 -     72240    912  ## COG0391 Uncharacterized conserved protein
                               +    Term     72370 -     72406    2.4 
    69    41 Tu  1     .       -    CDS      72432 -     74453   2265  ## COG0556 Helicase subunit of the DNA excision repair complex
                               -    Prom     74504 -     74563    6.9 
                               -    Term     74833 -     74875    1.1 
    70    42 Op  1   9/0.000   -    CDS      75032 -     75709    413  ## COG0132 Dethiobiotin synthetase
    71    42 Op  2   6/0.182   -    CDS      75702 -     76457    529  ## COG0500 SAM-dependent methyltransferases
    72    42 Op  3  12/0.000   -    CDS      76444 -     77598    978  ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes
    73    42 Op  4     .       -    CDS      77595 -     78635   1216  ## COG0502 Biotin synthase and related enzymes
                               -    Prom     78679 -     78738    3.2 
                               +    Prom     78629 -     78688    3.9 
    74    43 Op  1   4/0.455   +    CDS      78779 -     80011   1243  ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
    75    43 Op  2   1/0.864   +    CDS      80070 -     80546    479  ## COG1881 Phospholipid-binding protein
                               +    Prom     80591 -     80650    3.5 
    76    44 Tu  1     .       +    CDS      80698 -     81981   1239  ## COG4677 Pectin methylesterase
                               -    Term     82144 -     82198    7.3 
    77    45 Tu  1     .       -    CDS      82215 -     84476   2278  ## COG1048 Aconitase A
                               -    Prom     84512 -     84571    4.7 
    78    46 Op  1   3/0.636   -    CDS      84659 -     86092   1750  ## COG0471 Di- and tricarboxylate transporters
    79    46 Op  2     .       -    CDS      86168 -     86362    128  ## COG2828 Uncharacterized protein conserved in bacteria
Predicted protein(s)
>gi|223713568|gb|ACDM01000030.1| GENE     1        20  -       556    479    178 aa, chain - ## HITS:1  COG:ybjK KEGG:ns NR:ns ## COG: ybjK COG3226 # Protein_GI_number: 16128814 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     178       1     178     178     344  100.0  6e-95
MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAF
SSFTEIMSRQYQAFFSDVSDAPGACQAITDMIYSSQVATPDNMELMYQLYALASRKPLLK
TVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTDRKPLSREEILRMVERVAG
>gi|223713568|gb|ACDM01000030.1| GENE     2       640  -      1848   1062    402 aa, chain + ## HITS:1  COG:ybjJ KEGG:ns NR:ns ## COG: ybjJ COG0477 # Protein_GI_number: 16128813 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     402       1     402     402     663   99.0  0
MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSVSIAEMGGVLFGLSIGS
MSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTSPLLFAVGLGVFGASFGSA
EVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMALTAFGVPATVHILLAALVGI
APIYIAIQAIPDGTGKNAADGTQHGEKGVPFYRDIQLLLIGVVVLAIAFAEGSANDWLPL
LMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFIDRYSRVAVVRASALMGALGIGLIIF
VDSAWVAGVSVVLWGLGASLGFPLTISAASDTGPDAPTRVSVVATTGYLAFLVGPPLLGY
LGEHYGLRSAMLVVLALVILAAIVAKAVAKPDTKTQTAMENS
>gi|223713568|gb|ACDM01000030.1| GENE     3      1848  -      2663    838    271 aa, chain + ## HITS:1  COG:ybjI KEGG:ns NR:ns ## COG: ybjI COG0561 # Protein_GI_number: 16128812 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 10     271       1     262     262     520  100.0  1e-147
MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIAN
EIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDD
AMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGN
GSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVV
AAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ
>gi|223713568|gb|ACDM01000030.1| GENE     4      2755  -      3033    216     92 aa, chain + ## HITS:1  COG:no KEGG:ECO103_0887 NR:ns ## KEGG: ECO103_0887 # Name: ybjH # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      92       3      94      94     127  100.0  9e-29
MKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSVPQAVSVATVPQTVYVAPA
PAPAYRPHPYVRHLASVGEGMVIEHQIDDHHH
>gi|223713568|gb|ACDM01000030.1| GENE     5      3074  -      4306   1299    410 aa, chain - ## HITS:1  COG:ECs0922 KEGG:ns NR:ns ## COG: ECs0922 COG0477 # Protein_GI_number: 15830176 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     410       1     410     410     721  100.0  0
MQNKLASGARLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTA
YLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLC
FIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAAL
AAISFFGLQRAMPETATRIGEKLSLKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIA
QSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLL
VAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGMLQMLI
FTVGIEISKHAWLNGGNGLFNLFNLVNGILWLSLMVIFLKDKQMGNSHEG
>gi|223713568|gb|ACDM01000030.1| GENE     6      4591  -      5187    522    198 aa, chain + ## HITS:1  COG:ybjG KEGG:ns NR:ns ## COG: ybjG COG0671 # Protein_GI_number: 16128809 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli K12 # 1     198       1     198     198     356  100.0  2e-98
MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAVVLWLWGLTAQRQLVIKI
AIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFPSDHGTVIFTFALAFLCWH
RLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIGCLSAQIIWQAMGHKLYQRLQ
SWYRVCFALPIRKGWVRD
>gi|223713568|gb|ACDM01000030.1| GENE     7      5245  -      6003    671    252 aa, chain + ## HITS:1  COG:ECs0920 KEGG:ns NR:ns ## COG: ECs0920 COG1349 # Protein_GI_number: 15830174 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1     252       1     252     252     528  100.0  1e-150
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEP
RSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAV
CYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSK
GATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV
KYAQTQRIKLMY
>gi|223713568|gb|ACDM01000030.1| GENE     8      6050  -      7273   1265    407 aa, chain - ## HITS:1  COG:dacC KEGG:ns NR:ns ## COG: dacC COG1686 # Protein_GI_number: 16128807 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli K12 # 8     407       1     400     400     795  100.0  0
MDTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVL
AEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFL
KPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH
GLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDG
MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKP
DATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGT
IDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFHQWFGSWFS
>gi|223713568|gb|ACDM01000030.1| GENE     9      7499  -      8125    660    208 aa, chain + ## HITS:1  COG:ECs0918 KEGG:ns NR:ns ## COG: ECs0918 COG0625 # Protein_GI_number: 15830172 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1     208       3     210     210     400  100.0  1e-112
MITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDE
SDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRT
PPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFGVGDIAIAPFIYNLFNVGLTW
TPRPNLQRWYQQLTERPAVRKVVMIPVS
>gi|223713568|gb|ACDM01000030.1| GENE    10      8122  -      9093    867    323 aa, chain - ## HITS:1  COG:ECs0917 KEGG:ns NR:ns ## COG: ECs0917 COG2133 # Protein_GI_number: 15830171 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose/sorbosone dehydrogenases # Organism: Escherichia coli O157:H7 # 1     323      49     371     371     650  100.0  0
MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG
DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENN
QRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNAL
WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSP
AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG
PDGYLYVLTDESSGELLKVSPRN
>gi|223713568|gb|ACDM01000030.1| GENE    11      9348  -      9731    224    127 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_0907 NR:ns ## KEGG: EcE24377A_0907 # Name: bssR # Def: biofilm formation regulatory protein BssR # Organism: E.coli_E24377A # Pathway: not_defined # 1     127      12     138     138     226  100.0  2e-58
MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRL
NLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQK
HAMLEKA
>gi|223713568|gb|ACDM01000030.1| GENE    12      9944  -     11269   1844    441 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein [Vibrio cholerae MZO-3] # 9     439      34     464     470 714  77 0.0
MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAV
QESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKP
KHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKR
LVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYP
YPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTL
RSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERW
NRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKP
GDILRVKVEHADEYDLWGSRV
>gi|223713568|gb|ACDM01000030.1| GENE    13     11316  -     12644   1035    442 aa, chain - ## HITS:1  COG:yliF_2 KEGG:ns NR:ns ## COG: yliF_2 COG2199 # Protein_GI_number: 16128802 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 261     442       1     182     182     370  100.0  1e-102
MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVA
IDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQ
VVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSL
FKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVA
VISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDL
TKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPV
DKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERL
KMLADERLYKSKKNGRAQISWQ
>gi|223713568|gb|ACDM01000030.1| GENE    14     12652  -     15000   1584    782 aa, chain - ## HITS:1  COG:yliE_2 KEGG:ns NR:ns ## COG: yliE_2 COG2200 # Protein_GI_number: 16128801 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 526     782       1     257     257     531  100.0  1e-150
MLSLYEKIKIRLIILFLLAALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKD
IERSALTLKDSLYLLKNTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVV
YHQEQVNGPLVDESGRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLH
INGKDHDLLAVDKIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYN
SEGNYNIIDSVDTEYIEKTSAVPNNALFEIYFYYPGGNLLNASDKLFYLPFAFIIIVLLV
VYLMTTRVFRRQFSEMTELVNTLAFLPDSTDQIEALKIREGDAKEIISIKNSIAEMKDAE
IERSNKLLSLISYDQESGFIKNMAIIESNNNQYLAVGIIKLCGLEAVEAVFGVDERNKIV
RKLCQRIAEKYAQCCDIVTFNADLYLLLCRENVQTFTRKIAMVNDFDSSFGYRNLRIHKS
AICEPLQGENAWSYAEKLKLAISSIRDHMFSEFIFCDDAKLNEIEENIWIARNIRHAMEI
GELFLVYQPIVDINTRAILGAEALCRWVSAERGIISPLKFITIAEDIGFINELGYQIIKT
AMGEFRHFSQRASLKDDFLLHINVSPWQLNEPHFHERFTTIMKENGLKANSLCVEITETV
IERINEHFYLNIEQLRKQGVRISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAG
KIVRIIFDLARYNRIPVIAEGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLV
KE
>gi|223713568|gb|ACDM01000030.1| GENE    15     15178  -     16089    810    303 aa, chain - ## HITS:1  COG:yliD KEGG:ns NR:ns ## COG: yliD COG1173 # Protein_GI_number: 16128800 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1     303       1     303     303     563   99.0  1e-160
MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWI
APYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGT
LLGLLTGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFA
RLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASL
SFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK
IKG
>gi|223713568|gb|ACDM01000030.1| GENE    16     16092  -     17012    983    306 aa, chain - ## HITS:1  COG:yliC KEGG:ns NR:ns ## COG: yliC COG0601 # Protein_GI_number: 16128799 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1     306       1     306     306     563  100.0  1e-160
MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP
LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA
AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTL
GAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAIN
PAIRYK
>gi|223713568|gb|ACDM01000030.1| GENE    17     17030  -     18568   1653    512 aa, chain - ## HITS:1  COG:yliB KEGG:ns NR:ns ## COG: yliB COG0747 # Protein_GI_number: 16128798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     512       1     512     512     992  100.0  0
MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQ
GLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPA
NHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGF
YPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQF
AFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVK
VAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTA
QKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWAL
SPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPL
VVEKLVSAHSKNLTGFWIMPDTGFSFEDADLQ
>gi|223713568|gb|ACDM01000030.1| GENE    18     18588  -     20459    841    623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 12     572       8     528     563 328  35 6e-89
MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTAL
ALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPV
FTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA
MALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL
VMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQAP
PIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESG
SGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTI
GDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL
NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG
QIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAV
SLQCVGPGHYVAQPQSEYAFMRR
>gi|223713568|gb|ACDM01000030.1| GENE    19     20446  -     21411   1047    321 aa, chain - ## HITS:1  COG:ybiK KEGG:ns NR:ns ## COG: ybiK COG1446 # Protein_GI_number: 16128796 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Escherichia coli K12 # 1     321       1     321     321     581   99.0  1e-166
MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLL
EECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHV
MMIGEGAENFAFARGMERVSPEIFSTPLRYEQLLAARKEGATVLDHSGAPLDEKQKMGTV
GAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRAL
AAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWG
YAGDTPTTGIYREKGDTVATQ
>gi|223713568|gb|ACDM01000030.1| GENE    20     21615  -     22850   1259    411 aa, chain + ## HITS:1  COG:moeA KEGG:ns NR:ns ## COG: moeA COG0303 # Protein_GI_number: 16128795 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Escherichia coli K12 # 1     411       1     411     411     795  100.0  0
MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG
YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM
DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV
ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA
DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN
PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE
LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL
>gi|223713568|gb|ACDM01000030.1| GENE    21     22850  -     23599    863    249 aa, chain + ## HITS:1  COG:moeB KEGG:ns NR:ns ## COG: moeB COG0476 # Protein_GI_number: 16128794 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Escherichia coli K12 # 1     249       1     249     249     490  100.0  1e-138
MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTL
LDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA
EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLF
GENALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMR
NPGCEVCGQ
>gi|223713568|gb|ACDM01000030.1| GENE    22     23675  -     24343    842    222 aa, chain - ## HITS:1  COG:mipB KEGG:ns NR:ns ## COG: mipB COG0176 # Protein_GI_number: 16128793 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli K12 # 1     222      23     244     244     401  100.0  1e-112
MVMELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFA
QVMATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGL
LSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLL
AGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFGRTSI
>gi|223713568|gb|ACDM01000030.1| GENE    23     24468  -     25367   1009    299 aa, chain + ## HITS:1  COG:ybiY KEGG:ns NR:ns ## COG: ybiY COG1180 # Protein_GI_number: 16128792 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1     299      10     308     308     600  100.0  1e-171
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDLLYDARLCLEGCELCAK
AAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGEVKSVEEIMTTVLRDKPFY
DRSGGGLTLSGGEPFMQPEMAMALLQASHEAGIHTAVETCLHVPWKYIAPSLPYIDLFLA
DLKHVADAPFKQWTDGNAARVLDNLKKLAAAGKKIIIRVPLIQGFNADETSVKAITDFAA
DELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLDAPELLDFAQQYACQKGLTATLRG
>gi|223713568|gb|ACDM01000030.1| GENE    24     25373  -     27805   2915    810 aa, chain + ## HITS:1  COG:ybiW KEGG:ns NR:ns ## COG: ybiW COG1882 # Protein_GI_number: 16128791 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1     810       1     810     810    1700   99.0  0
MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHLDKPIPVRRALALAHHL
ANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFAVSEENKRVL
HEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMTSGDAHLAVNFPLLLEKGLDG
LREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSEHIERFAALAREMAATETRESRR
DELLAMAENCDLIAHQPPQTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRD
VELNQTLDREHAIEMLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPM
DAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVI
PEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAALEGGHDATSGK
VFLPQEKALSAGNFNNFDEVMDAWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVD
DCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFD
GLTHEQLRQRLINGAPKYGNDDDTVDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAG
TSSISANVPFGAQTMATPDGRKAHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGG
VLLNQKLNPATLENESDKQKLMILLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDL
VVRVAGYSAFFTALSPDAQDDIIARTEHML
>gi|223713568|gb|ACDM01000030.1| GENE    25     27951  -     28766    922    271 aa, chain + ## HITS:1  COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1     271       1     271     271     546  100.0  1e-155
MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKD
EISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPE
AFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGF
GFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIK
QIARYATDDNNHEGALNVIQAVLDNTSPFNS
>gi|223713568|gb|ACDM01000030.1| GENE    26     28918  -     30183   1057    421 aa, chain + ## HITS:1  COG:no KEGG:B21_00805 NR:ns ## KEGG: B21_00805 # Name: ybiU # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     421       1     421     421     872  100.0  0
MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAV
WPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYK
GPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDV
SVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR
TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPED
ELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVM
YIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGMD
V
>gi|223713568|gb|ACDM01000030.1| GENE    27     30424  -     31992   2057    522 aa, chain - ## HITS:1  COG:ECs0897 KEGG:ns NR:ns ## COG: ECs0897 COG0488 # Protein_GI_number: 15830151 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1     522       9     530     530    1039  100.0  0
MQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGK
LRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDG
YSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDI
DTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQAR
ERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIR
FEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGD
LQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFS
QDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTL
IFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE
>gi|223713568|gb|ACDM01000030.1| GENE    28     32235  -     33155   1097    306 aa, chain + ## HITS:1  COG:ECs0896 KEGG:ns NR:ns ## COG: ECs0896 COG1376 # Protein_GI_number: 15830150 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     306       1     306     306     599  100.0  1e-171
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEY
QMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTV
IVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPM
GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSG
MPVRLN
>gi|223713568|gb|ACDM01000030.1| GENE    29     33214  -     34332   1044    372 aa, chain - ## HITS:1  COG:ybiR KEGG:ns NR:ns ## COG: ybiR COG0471 # Protein_GI_number: 16128786 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1     372       1     372     372     618  100.0  1e-177
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVEL
SGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV
NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWC
CFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRV
VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPST
ILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL
VGYVLLVILPAN
>gi|223713568|gb|ACDM01000030.1| GENE    30     34329  -     34796    550    155 aa, chain - ## HITS:1  COG:ybiQ KEGG:ns NR:ns ## COG: ybiQ COG1321 # Protein_GI_number: 16128785 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Escherichia coli K12 # 1     155       1     155     155     268  100.0  2e-72
MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDM
AARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLG
VSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK
>gi|223713568|gb|ACDM01000030.1| GENE    31     34982  -     35110     71     42 aa, chain + ## HITS:1  COG:no KEGG:SbBS512_E2532 NR:ns ## KEGG: SbBS512_E2532 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1      42       1      42      42      69   97.0  3e-11
MNEFKRCMRVFSHSPFKVRLMLLSMLCDMVNNKPQQDKPSDK
>gi|223713568|gb|ACDM01000030.1| GENE    32     35382  -     36965   1522    527 aa, chain + ## HITS:1  COG:ybiP KEGG:ns NR:ns ## COG: ybiP COG2194 # Protein_GI_number: 16128783 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     527       1     527     527    1073  100.0  0
MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRV
QKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIF
ALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFA
KDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWD
NTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFS
NQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIV
LHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYF
SDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQW
TGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP
>gi|223713568|gb|ACDM01000030.1| GENE    33     37014  -     37529    561    171 aa, chain - ## HITS:1  COG:ECs0892 KEGG:ns NR:ns ## COG: ECs0892 COG3637 # Protein_GI_number: 15830146 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Opacity protein and related surface antigens # Organism: Escherichia coli O157:H7 # 1     171       1     171     171     301  100.0  4e-82
MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPL
GVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPT
YKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
>gi|223713568|gb|ACDM01000030.1| GENE    34     37882  -     38769    953    295 aa, chain + ## HITS:1  COG:ECs0891 KEGG:ns NR:ns ## COG: ECs0891 COG5006 # Protein_GI_number: 15830145 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Escherichia coli O157:H7 # 1     295       1     295     295     481  100.0  1e-135
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK
PWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
DFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVA
IGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGT
LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
>gi|223713568|gb|ACDM01000030.1| GENE    35     39068  -     39571    641    167 aa, chain + ## HITS:1  COG:ECs0890 KEGG:ns NR:ns ## COG: ECs0890 COG0783 # Protein_GI_number: 15830144 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Escherichia coli O157:H7 # 1     167       1     167     167     305  100.0  3e-83
MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFI
AVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKE
LADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE
>gi|223713568|gb|ACDM01000030.1| GENE    36     39975  -     40721   1005    248 aa, chain + ## HITS:1  COG:ECs0889 KEGG:ns NR:ns ## COG: ECs0889 COG0834 # Protein_GI_number: 15830143 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 1     248       1     248     248     462  100.0  1e-130
MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKE
LKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANN
NDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDT
PNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYK
KWFGTEPK
>gi|223713568|gb|ACDM01000030.1| GENE    37     40860  -     41519    944    219 aa, chain + ## HITS:1  COG:ECs0888 KEGG:ns NR:ns ## COG: ECs0888 COG0765 # Protein_GI_number: 15830142 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1     219       1     219     219     373  100.0  1e-103
MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE
VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF
REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI
IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKIL
>gi|223713568|gb|ACDM01000030.1| GENE    38     41516  -     42238    595    240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     239       1     242     245 233  47 2e-60
MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV
DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLAREL
LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ
DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQRLQEFLQHVS
>gi|223713568|gb|ACDM01000030.1| GENE    39     42499  -     44724   2041    741 aa, chain + ## HITS:1  COG:ECs0886_2 KEGG:ns NR:ns ## COG: ECs0886_2 COG0668 # Protein_GI_number: 15830140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 431     741       1     311     311     582  100.0  1e-166
MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQKKAAYGALADVLDNDT
SRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEVSRHYGEALSARFGQLYRN
ITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCALPLYRKMGQWARQKNRERSNW
LQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRTIAFQQSLFLNAFALIEFFKAVL
RLIFCPNVAELRPFTIQDESARYWSRRLSWLSSLIGYGLIVAVPIISNQVNVQIGALANV
IIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLAFFSLFIRAFALVWHWLASAYFIVLFF
FSLFDPGNSLKFMMGATVRSLAIIGIAAFVSGMFSRWLAKTITLSPHTQRNYPELQKRLN
GWLSAALKTARILTVCVAVMLLLSAWGLFDFWNWLQNGAGQKTVDILIRIALILFFSAVG
WTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPL
LAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVR
QDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR
GLIIGEPNFAGIVGLSNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTY
QVLPAPGATPAEPLPPGEPTL
>gi|223713568|gb|ACDM01000030.1| GENE    40     44721  -     45647    779    308 aa, chain - ## HITS:1  COG:ybiN KEGG:ns NR:ns ## COG: ybiN COG3129 # Protein_GI_number: 16128775 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Escherichia coli K12 # 1     308      28     335     335     639  100.0  0
MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALL
AHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPL
IGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRRQKESGAIFNGIIHKNEQYD
ATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEES
KGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFMNDEQR
RRFVNRQR
>gi|223713568|gb|ACDM01000030.1| GENE    41     45923  -     46183    241     86 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_0844 NR:ns ## KEGG: ECIAI1_0844 # Name: ybiM # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      86      49     134     134     163  100.0  1e-39
MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAR
EQGAKGYVINSAGGNDQMFGTATIYK
>gi|223713568|gb|ACDM01000030.1| GENE    42     46448  -     48730   2038    760 aa, chain + ## HITS:1  COG:fiu KEGG:ns NR:ns ## COG: fiu COG4774 # Protein_GI_number: 16128773 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for monomeric catechols # Organism: Escherichia coli K12 # 1     760       1     760     760    1392   99.0  0
MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTLVVEASTPSLYAPQQSA
DPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDAIYM
RGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRND
SGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVA
FGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDS
DYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWT
WSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNI
YHPDSSIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATA
CGGSGRGAITCPTGVAKGSPVTTVDTAKSGNLMNWKAGALNHLTENGNVYINYAVSQQPP
GGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQN
DDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPE
HAFTLWSQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLD
FQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF
>gi|223713568|gb|ACDM01000030.1| GENE    43     48772  -     49449    688    225 aa, chain + ## HITS:1  COG:ybiX KEGG:ns NR:ns ## COG: ybiX COG3128 # Protein_GI_number: 16128772 # Func_class: S Function unknown # Function: Uncharacterized iron-regulated protein # Organism: Escherichia coli K12 # 1     225      13     237     237     459  100.0  1e-129
MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEV
LNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFL
SDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIR
DDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI
>gi|223713568|gb|ACDM01000030.1| GENE    44     49523  -     49789    323     88 aa, chain + ## HITS:1  COG:ybiI KEGG:ns NR:ns ## COG: ybiI COG1734 # Protein_GI_number: 16128771 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Escherichia coli K12 # 1      88       1      88      88     158  100.0  3e-39
MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC
IHCQQEKDLQKPAYTGYNRRGSKDSQLR
>gi|223713568|gb|ACDM01000030.1| GENE    45     50054  -     50314    280     86 aa, chain + ## HITS:1  COG:no KEGG:EC55989_0846 NR:ns ## KEGG: EC55989_0846 # Name: ybiJ # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      86       1      86      86      82  100.0  3e-15
MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAA
AAGASGYSITSATNNNKLSGTAVIYK
>gi|223713568|gb|ACDM01000030.1| GENE    46     50543  -     51628   1335    361 aa, chain - ## HITS:1  COG:ybiC KEGG:ns NR:ns ## COG: ybiC COG2055 # Protein_GI_number: 16128769 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1     361       1     361     361     729  100.0  0
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSW
SQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHH
IGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLD
YATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKA
SPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLA
S
>gi|223713568|gb|ACDM01000030.1| GENE    47     51769  -     52731    968    320 aa, chain - ## HITS:1  COG:ybiB KEGG:ns NR:ns ## COG: ybiB COG0547 # Protein_GI_number: 16128768 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Escherichia coli K12 # 1     320       1     320     320     644  100.0  0
MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEML
GFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSED
PTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNS
AHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCP
QINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCL
VATGEAATISDGLARVNQAF
>gi|223713568|gb|ACDM01000030.1| GENE    48     52759  -     54909   2075    716 aa, chain - ## HITS:1  COG:dinG KEGG:ns NR:ns ## COG: dinG COG1199 # Protein_GI_number: 16128767 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Escherichia coli K12 # 1     716       1     716     716    1437  100.0  0
MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK
TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC
PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID
DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP
KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI
PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR
GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA
TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK
AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL
FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL
KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS
HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR
>gi|223713568|gb|ACDM01000030.1| GENE    49     55062  -     55511    434    149 aa, chain + ## HITS:1  COG:ybiA KEGG:ns NR:ns ## COG: ybiA COG3236 # Protein_GI_number: 16128766 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     149      12     160     160     290  100.0  8e-79
MQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTWPTSEHYFQAQKFLDEKYREEIRRVSSP
MVAARMGRDRSKPLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDA
YWGDGGHGKGKNRLGYLLMELREQLAIEK
>gi|223713568|gb|ACDM01000030.1| GENE    50     55743  -     57107   1433    454 aa, chain - ## HITS:1  COG:rhlE KEGG:ns NR:ns ## COG: rhlE COG0513 # Protein_GI_number: 16128765 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1     442       1     442     454     778  100.0  0
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA
SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
>gi|223713568|gb|ACDM01000030.1| GENE    51     57336  -     58007    734    223 aa, chain + ## HITS:1  COG:ECs0874 KEGG:ns NR:ns ## COG: ECs0874 COG1309 # Protein_GI_number: 15830128 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     223       5     227     227     437  100.0  1e-123
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYL
ACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK
FISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFR
LGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
>gi|223713568|gb|ACDM01000030.1| GENE    52     58010  -     59005   1289    331 aa, chain + ## HITS:1  COG:Z1015 KEGG:ns NR:ns ## COG: Z1015 COG0845 # Protein_GI_number: 15800546 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 EDL933 # 1     331       2     332     332     552   99.0  1e-157
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVD
EGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQ
AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDI
AQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLV
YRLRIVVTDADDALRQGMPVTVQFGDEAGHE
>gi|223713568|gb|ACDM01000030.1| GENE    53     58998  -     60734    343    578 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 330     549      12     233     318 136  34 3e-31
MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPD
SGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFA
RLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQM
VHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHE
GNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAF
IDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGL
LGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVE
QNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPD
ILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIAS
GTPDGLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
>gi|223713568|gb|ACDM01000030.1| GENE    54     60727  -     61860   1442    377 aa, chain + ## HITS:1  COG:ECs0871 KEGG:ns NR:ns ## COG: ECs0871 COG0842 # Protein_GI_number: 15830125 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1     377       1     377     377     682  100.0  0
MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILL
EQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRGLVVIPVDFAEQMERANAT
APIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQ
HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGML
AMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAA
FLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIAS
AVMFIGLTWLKTKRRLD
>gi|223713568|gb|ACDM01000030.1| GENE    55     61871  -     62977   1190    368 aa, chain + ## HITS:1  COG:ECs0870 KEGG:ns NR:ns ## COG: ECs0870 COG0842 # Protein_GI_number: 15830124 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1     368       1     368     368     686  100.0  0
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEH
SVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLI
LDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI
AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG
YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAY
AMFRRKVM
>gi|223713568|gb|ACDM01000030.1| GENE    56     62939  -     63349    485    136 aa, chain - ## HITS:1  COG:no KEGG:G2583_1019 NR:ns ## KEGG: G2583_1019 # Name: ybhQ # Def: inner membrane protein YbhQ # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     136       1     136     136     215  100.0  4e-55
MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQR
HPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLA
KDKKLHHLTSKHRVRR
>gi|223713568|gb|ACDM01000030.1| GENE    57     63482  -     64243    616    253 aa, chain + ## HITS:1  COG:ECs0868 KEGG:ns NR:ns ## COG: ECs0868 COG3568 # Protein_GI_number: 15830122 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Escherichia coli O157:H7 # 1     253       1     253     253     520  100.0  1e-147
MPDQTQQFSFKVLTINIHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLH
VENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVDGAEKR
GVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVLVAGDFNDWR
QKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLRTWRH
LSDHAPLSAEIHL
>gi|223713568|gb|ACDM01000030.1| GENE    58     64240  -     65481   1174    413 aa, chain + ## HITS:1  COG:ECs0867 KEGG:ns NR:ns ## COG: ECs0867 COG1502 # Protein_GI_number: 15830121 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli O157:H7 # 1     413       1     413     413     835  100.0  0
MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQ
RGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVID
ARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRH
HKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHAL
RKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHW
ATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNL
TKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP
>gi|223713568|gb|ACDM01000030.1| GENE    59     65481  -     66437   1161    318 aa, chain + ## HITS:1  COG:ybhN KEGG:ns NR:ns ## COG: ybhN COG0392 # Protein_GI_number: 16128756 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1     318       1     318     318     530  100.0  1e-150
MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVV
SYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPG
STITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLW
FCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVL
LVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICY
LLLESQAKKLRAKNEAAM
>gi|223713568|gb|ACDM01000030.1| GENE    60     66473  -     67186    298    237 aa, chain - ## HITS:1  COG:ybhM KEGG:ns NR:ns ## COG: ybhM COG0670 # Protein_GI_number: 16128755 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1     237       1     237     237     417   99.0  1e-116
MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYLEITATKYDSPPMYVAI
GLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLIS
MLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWVISCLMIVLWSGIISHGR
NKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
>gi|223713568|gb|ACDM01000030.1| GENE    61     67213  -     67305     63     30 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MPYGRAEAFSVSINAKVFCMRGFKFIDGEY
>gi|223713568|gb|ACDM01000030.1| GENE    62     67391  -     68095    737    234 aa, chain - ## HITS:1  COG:ybhL KEGG:ns NR:ns ## COG: ybhL COG0670 # Protein_GI_number: 16128754 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1     234       1     234     234     368  100.0  1e-102
MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNRVFLI
GLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSSIFIVYTAASIASTFVVTA
GMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVG
LTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR
>gi|223713568|gb|ACDM01000030.1| GENE    63     68232  -     68684    631    150 aa, chain - ## HITS:1  COG:moaE KEGG:ns NR:ns ## COG: moaE COG0314 # Protein_GI_number: 16128753 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Escherichia coli K12 # 1     150       1     150     150     291  100.0  3e-79
MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTE
KALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKT
RAPFWKREATPEGDRWVEARESDQQAAKRW
>gi|223713568|gb|ACDM01000030.1| GENE    64     68686  -     68931    310     81 aa, chain - ## HITS:1  COG:moaD KEGG:ns NR:ns ## COG: moaD COG1977 # Protein_GI_number: 16128752 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Escherichia coli K12 # 1      81       1      81      81     149  100.0  1e-36
MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLV
SFDHPLTDGDEVAFFPPVTGG
>gi|223713568|gb|ACDM01000030.1| GENE    65     68924  -     69409    682    161 aa, chain - ## HITS:1  COG:ECs0861 KEGG:ns NR:ns ## COG: ECs0861 COG0315 # Protein_GI_number: 15830115 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Escherichia coli O157:H7 # 1     161       1     161     161     296  100.0  9e-81
MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARI
AGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAAS
VAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEADD
>gi|223713568|gb|ACDM01000030.1| GENE    66     69412  -     69924    586    170 aa, chain - ## HITS:1  COG:ECs0860 KEGG:ns NR:ns ## COG: ECs0860 COG0521 # Protein_GI_number: 15830114 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Escherichia coli O157:H7 # 1     170       1     170     170     341  100.0  4e-94
MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQ
VSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQ
SRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK
>gi|223713568|gb|ACDM01000030.1| GENE    67     69946  -     70935    709    329 aa, chain - ## HITS:1  COG:ECs0859 KEGG:ns NR:ns ## COG: ECs0859 COG2896 # Protein_GI_number: 15830113 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Escherichia coli O157:H7 # 1     329       1     329     329     680   99.0  0
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFA
SLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVASWRDAGLTGI
NVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNW
IQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHP
DYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARI
SAALREKKQTHFLHQNNTGITQNLSYIGG
>gi|223713568|gb|ACDM01000030.1| GENE    68     71332  -     72240    912    302 aa, chain + ## HITS:1  COG:ybhK KEGG:ns NR:ns ## COG: ybhK COG0391 # Protein_GI_number: 16128748 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     302       1     302     302     548  100.0  1e-156
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAW
GDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRN
LLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAI
NEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKL
AIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQA
LG
>gi|223713568|gb|ACDM01000030.1| GENE    69     72432  -     74453   2265    673 aa, chain - ## HITS:1  COG:ECs0857 KEGG:ns NR:ns ## COG: ECs0857 COG0556 # Protein_GI_number: 15830111 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Escherichia coli O157:H7 # 1     673       1     673     673    1265  100.0  0
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR
FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD
QLHQLRELFIAAS
>gi|223713568|gb|ACDM01000030.1| GENE    70     75032  -     75709    413    225 aa, chain - ## HITS:1  COG:bioD KEGG:ns NR:ns ## COG: bioD COG0132 # Protein_GI_number: 16128746 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Escherichia coli K12 # 1     225       1     225     225     433  100.0  1e-121
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ
RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG
WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP
PGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>gi|223713568|gb|ACDM01000030.1| GENE    71     75702  -     76457    529    251 aa, chain - ## HITS:1  COG:bioC KEGG:ns NR:ns ## COG: bioC COG0500 # Protein_GI_number: 16128745 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     251       1     251     251     460  100.0  1e-130
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHW
RERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLS
TALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHY
QHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLT
YHLFLGVIARE
>gi|223713568|gb|ACDM01000030.1| GENE    72     76444  -     77598    978    384 aa, chain - ## HITS:1  COG:bioF KEGG:ns NR:ns ## COG: bioF COG0156 # Protein_GI_number: 16128744 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Escherichia coli K12 # 1     384       1     384     384     679  100.0  0
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIR
AWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMM
AKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSM
DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV
SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALIT
RFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARL
RLTLTAAHEMQDIDRLLEVLHGNG
>gi|223713568|gb|ACDM01000030.1| GENE    73     77595  -     78635   1216    346 aa, chain - ## HITS:1  COG:bioB KEGG:ns NR:ns ## COG: bioB COG0502 # Protein_GI_number: 16128743 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Escherichia coli K12 # 1     346       1     346     346     694  100.0  0
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC
PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV
KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV
RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA
FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK
DLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>gi|223713568|gb|ACDM01000030.1| GENE    74     78779  -     80011   1243    410 aa, chain + ## HITS:1  COG:bioA KEGG:ns NR:ns ## COG: bioA COG0161 # Protein_GI_number: 16128742 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Escherichia coli K12 # 1     410      20     429     429     830  100.0  0
MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM
FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLT
FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA
AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA
CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA
ANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL
QKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>gi|223713568|gb|ACDM01000030.1| GENE    75     80070  -     80546    479    158 aa, chain + ## HITS:1  COG:ybhB KEGG:ns NR:ns ## COG: ybhB COG1881 # Protein_GI_number: 16128741 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Escherichia coli K12 # 1     158       1     158     158     314  100.0  4e-86
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSG
WWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTV
HALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>gi|223713568|gb|ACDM01000030.1| GENE    76     80698  -     81981   1239    427 aa, chain + ## HITS:1  COG:ybhC KEGG:ns NR:ns ## COG: ybhC COG4677 # Protein_GI_number: 16128740 # Func_class: G Carbohydrate transport and metabolism # Function: Pectin methylesterase # Organism: Escherichia coli K12 # 1     427       1     427     427     823  100.0  0
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFA
SLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPG
EYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWY
MYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEF
RVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIR
DSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
VVAEAKK
>gi|223713568|gb|ACDM01000030.1| GENE    77     82215  -     84476   2278    753 aa, chain - ## HITS:1  COG:ybhJ KEGG:ns NR:ns ## COG: ybhJ COG1048 # Protein_GI_number: 16128739 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1     753       9     761     761    1553  100.0  0
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDS
LASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGG
IFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDI
DYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSV
DVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIA
LPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGC
SGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAF
CGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT
SASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLK
VCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAG
NVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIA
EEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAP
VTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>gi|223713568|gb|ACDM01000030.1| GENE    78     84659  -     86092   1750    477 aa, chain - ## HITS:1  COG:ybhI KEGG:ns NR:ns ## COG: ybhI COG0471 # Protein_GI_number: 16128738 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1     477       1     477     477     798  100.0  0
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIA
VAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKI
GNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLM
MSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVI
YTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAI
VVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFD
GHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYG
GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>gi|223713568|gb|ACDM01000030.1| GENE    79     86168  -     86362    128     64 aa, chain - ## HITS:1  COG:ybhH KEGG:ns NR:ns ## COG: ybhH COG2828 # Protein_GI_number: 16128737 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      64     287     350     350     128  100.0  3e-30
SSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGE
VYLP
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:56:43 2011
 Seq name: gi|223713567|gb|ACDM01000031.1| Escherichia sp. 4_1_40B cont1.31, whole genome shotgun sequence 
 Length of sequence - 18713 bp
 Number of predicted genes - 19, with homology - 19
 Number of transcription units - 12, operones - 4 average op.length -  2.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        104 -       937    516  ## COG0583 Transcriptional regulator
                               +    Term      1053 -      1099    5.0 
                               -    Term       930 -       965    6.4 
     2     2 Tu  1     .       -    CDS        978 -      1973   1008  ## COG2706 3-carboxymuconate cyclase
                               +    Prom      1964 -      2023    6.0 
     3     3 Tu  1     .       +    CDS       2128 -      2946    934  ## COG0561 Predicted hydrolases of the HAD superfamily
     4     4 Op  1  13/0.000   -    CDS       2947 -      4005   1179  ## COG4148 ABC-type molybdate transport system, ATPase component
     5     4 Op  2  23/0.000   -    CDS       4008 -      4697    653  ## COG4149 ABC-type molybdate transport system, permease component
     6     4 Op  3     .       -    CDS       4697 -      5470    875  ## COG0725 ABC-type molybdate transport system, periplasmic component
                               -    Prom      5562 -      5621    4.3 
                               -    Term      5595 -      5630    4.5 
     7     5 Tu  1     .       -    CDS       5637 -      5786    112  ## ECSE_0815 hypothetical protein
                               -    Prom      5808 -      5867    6.1 
                               +    Prom      5734 -      5793    3.0 
     8     6 Op  1   4/0.600   +    CDS       5915 -      6703    840  ## COG2005 N-terminal domain of molybdenum-binding protein
     9     6 Op  2     .       +    CDS       6771 -      8243    177  ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein
                               +    Prom      8323 -      8382    6.9 
    10     7 Op  1   3/0.800   +    CDS       8504 -      9520   1103  ## COG1087 UDP-glucose 4-epimerase
    11     7 Op  2   8/0.000   +    CDS       9530 -     10576    829  ## COG1085 Galactose-1-phosphate uridylyltransferase
    12     7 Op  3   6/0.000   +    CDS      10580 -     11728   1100  ## COG0153 Galactokinase
    13     7 Op  4   4/0.600   +    CDS      11722 -     12762   1117  ## COG2017 Galactose mutarotase and related enzymes
                               +    Term     12769 -     12797    1.4 
                               +    Prom     12870 -     12929    4.1 
    14     8 Tu  1     .       +    CDS      12964 -     13716   1067  ## COG0588 Phosphoglycerate mutase 1
                               +    Term     13737 -     13777    7.1 
                               -    Term     13729 -     13761    2.8 
    15     9 Tu  1     .       -    CDS      13874 -     14926   1014  ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
                               -    Prom     14967 -     15026    6.1 
    16    10 Tu  1     .       +    CDS      15242 -     15622    355  ## B21_00695 hypothetical protein
                               +    Term     15644 -     15677    2.1 
                               +    Prom     15653 -     15712    6.0 
    17    11 Tu  1     .       +    CDS      15736 -     16677    749  ## COG1230 Co/Zn/Cd efflux system component
                               +    Term     16686 -     16722    4.7 
    18    12 Op  1   5/0.600   -    CDS      16674 -     17378    635  ## COG3201 Nicotinamide mononucleotide transporter
    19    12 Op  2     .       -    CDS      17431 -     18465    719  ## COG0379 Quinolinate synthase
                               -    Prom     18557 -     18616    4.5 
Predicted protein(s)
>gi|223713567|gb|ACDM01000031.1| GENE     1       104  -       937    516    277 aa, chain + ## HITS:1  COG:ybhD KEGG:ns NR:ns ## COG: ybhD COG0583 # Protein_GI_number: 16128736 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     277      62     338     338     575   99.0  1e-164
MEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACI
PTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFT
PLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWF
YEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLS
PAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>gi|223713567|gb|ACDM01000031.1| GENE     2       978  -      1973   1008    331 aa, chain - ## HITS:1  COG:ybhE KEGG:ns NR:ns ## COG: ybhE COG2706 # Protein_GI_number: 16128735 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Escherichia coli K12 # 1     331       1     331     331     679  100.0  0
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV
LAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV
DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH
MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG
RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS
VYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>gi|223713567|gb|ACDM01000031.1| GENE     3      2128  -      2946    934    272 aa, chain + ## HITS:1  COG:ybhA KEGG:ns NR:ns ## COG: ybhA COG0561 # Protein_GI_number: 16128734 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1     272       1     272     272     555  100.0  1e-158
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALD
TPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGH
VIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELG
LECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAM
GNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>gi|223713567|gb|ACDM01000031.1| GENE     4      2947  -      4005   1179    352 aa, chain - ## HITS:1  COG:modC KEGG:ns NR:ns ## COG: modC COG4148 # Protein_GI_number: 16128733 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, ATPase component # Organism: Escherichia coli K12 # 1     352       1     352     352     669  100.0  0
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGR
VLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEP
LLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINI
PMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVL
EHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKV
VNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>gi|223713567|gb|ACDM01000031.1| GENE     5      4008  -      4697    653    229 aa, chain - ## HITS:1  COG:ECs0792 KEGG:ns NR:ns ## COG: ECs0792 COG4149 # Protein_GI_number: 15830046 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Escherichia coli O157:H7 # 1     229       1     229     229     370  100.0  1e-102
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPV
VVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDV
KLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRT
IPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>gi|223713567|gb|ACDM01000031.1| GENE     6      4697  -      5470    875    257 aa, chain - ## HITS:1  COG:modA KEGG:ns NR:ns ## COG: modA COG0725 # Protein_GI_number: 16128731 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     257       1     257     257     465  100.0  1e-131
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSF
ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQK
DFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGAL
ALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYL
KGPQAAEIFKRYGFTIK
>gi|223713567|gb|ACDM01000031.1| GENE     7      5637  -      5786    112     49 aa, chain - ## HITS:1  COG:no KEGG:ECSE_0815 NR:ns ## KEGG: ECSE_0815 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      49       3      51      51      77  100.0  1e-13
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH
>gi|223713567|gb|ACDM01000031.1| GENE     8      5915  -      6703    840    262 aa, chain + ## HITS:1  COG:ECs0789 KEGG:ns NR:ns ## COG: ECs0789 COG2005 # Protein_GI_number: 15830043 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Escherichia coli O157:H7 # 1     262       1     262     262     451  100.0  1e-127
MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSE
HILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISR
FSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLI
LLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATS
LQQGQNVTAYFNADSVIIATLC
>gi|223713567|gb|ACDM01000031.1| GENE     9      6771  -      8243    177    490 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 276     465      21     199     311 72  28 2e-12
MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGER
QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLA
QQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLAS
LHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGV
QLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNNLSWQVNPGEHWQIVGPNGAGKS
TLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVIL
SGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP
TLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGG
LYRYVLTKIY
>gi|223713567|gb|ACDM01000031.1| GENE    10      8504  -      9520   1103    338 aa, chain + ## HITS:1  COG:galE KEGG:ns NR:ns ## COG: galE COG1087 # Protein_GI_number: 16128727 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Escherichia coli K12 # 1     338       1     338     338     706  100.0  0
MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR
NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI
FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP
VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA
DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYW
ADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD
>gi|223713567|gb|ACDM01000031.1| GENE    11      9530  -     10576    829    348 aa, chain + ## HITS:1  COG:galT KEGG:ns NR:ns ## COG: galT COG1085 # Protein_GI_number: 16128726 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Escherichia coli K12 # 1     348       1     348     348     707  100.0  0
MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVR
VTGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLP
ELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAE
REDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAH
VLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY
PPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRESGV
>gi|223713567|gb|ACDM01000031.1| GENE    12     10580  -     11728   1100    382 aa, chain + ## HITS:1  COG:ECs0785 KEGG:ns NR:ns ## COG: ECs0785 COG0153 # Protein_GI_number: 15830039 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Escherichia coli O157:H7 # 1     382       1     382     382     775  100.0  0
MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRD
DRKVRVMAADYENQLDEFSLDAPIVAHENYQWANYVRGVVKHLQLRNNSFGGVDMVISGN
VPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISAL
GKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQP
ALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTVEAASALEQGDLKRMGELMAESHAS
MRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGGGFGGCIVALIPEELVPAVQQAVAEQY
EAKTGIKETFYVCKPSQGAGQC
>gi|223713567|gb|ACDM01000031.1| GENE    13     11722  -     12762   1117    346 aa, chain + ## HITS:1  COG:galM KEGG:ns NR:ns ## COG: galM COG2017 # Protein_GI_number: 16128724 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1     346       1     346     346     711  100.0  0
MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPE
CYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ
NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVDKPCPVNMTNHVYFNL
DGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRK
VKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPY
ADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE
>gi|223713567|gb|ACDM01000031.1| GENE    14     12964  -     13716   1067    250 aa, chain + ## HITS:1  COG:ECs0783 KEGG:ns NR:ns ## COG: ECs0783 COG0588 # Protein_GI_number: 15830037 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Escherichia coli O157:H7 # 1     250       1     250     250     470  100.0  1e-133
MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVL
KRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFA
VTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVI
IAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLKRYYLGNADEIAAKA
AAVANQGKAK
>gi|223713567|gb|ACDM01000031.1| GENE    15     13874  -     14926   1014    350 aa, chain - ## HITS:1  COG:ECs0782 KEGG:ns NR:ns ## COG: ECs0782 COG0722 # Protein_GI_number: 15830036 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli O157:H7 # 1     350       1     350     350     717  100.0  0
MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGP
CSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQIN
DGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLS
CPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPN
YSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVM
VESHLVEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKARRG
>gi|223713567|gb|ACDM01000031.1| GENE    16     15242  -     15622    355    126 aa, chain + ## HITS:1  COG:no KEGG:B21_00695 NR:ns ## KEGG: B21_00695 # Name: ybgS # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     126       1     126     126     146  100.0  2e-34
MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDN
NGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTK
TDGTTQ
>gi|223713567|gb|ACDM01000031.1| GENE    17     15736  -     16677    749    313 aa, chain + ## HITS:1  COG:ZybgR KEGG:ns NR:ns ## COG: ZybgR COG1230 # Protein_GI_number: 15800461 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Escherichia coli O157:H7 EDL933 # 4     307       2     305     311     529   99.0  1e-150
MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAA
LLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVE
GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWT
GWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVH
HVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCH
LNEGVSGHSHHHH
>gi|223713567|gb|ACDM01000031.1| GENE    18     16674  -     17378    635    234 aa, chain - ## HITS:1  COG:pnuC KEGG:ns NR:ns ## COG: pnuC COG3201 # Protein_GI_number: 16128719 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Escherichia coli K12 # 1     234       6     239     239     391   99.0  1e-109
MQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGIIFFQI
QLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSIGLMTV
FINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRKYVENW
LLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALSH
>gi|223713567|gb|ACDM01000031.1| GENE    19     17431  -     18465    719    344 aa, chain - ## HITS:1  COG:nadA KEGG:ns NR:ns ## COG: nadA COG0379 # Protein_GI_number: 16128718 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Escherichia coli K12 # 1     344       4     347     347     693  100.0  0
MFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGG
CISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEE
FNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGR
YVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGST
SQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMN
GLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:57:02 2011
 Seq name: gi|223713566|gb|ACDM01000032.1| Escherichia sp. 4_1_40B cont1.32, whole genome shotgun sequence 
 Length of sequence - 42014 bp
 Number of predicted genes - 38, with homology - 38
 Number of transcription units - 11, operones - 6 average op.length -  5.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -   TRNA          3 -        78   94.3  # Val TAC 0 0
                               -   TRNA        214 -       289   99.5  # Lys TTT 0 0
     2     1 Op  2  20/0.000   -    CDS       1255 -      1776    668  ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins
     3     1 Op  3   8/0.000   -    CDS       1811 -      3103   1281  ## COG0823 Periplasmic component of the Tol biopolymer transport system
                               -    Prom      3155 -      3214    4.0 
     4     1 Op  4   8/0.000   -    CDS       3236 -      4303   1249  ## COG3064 Membrane protein involved in colicin uptake
                               -    Term      4395 -      4451    2.2 
     5     1 Op  5  30/0.000   -    CDS       4566 -      4994    483  ## COG0848 Biopolymer transport protein
     6     1 Op  6  13/0.000   -    CDS       4998 -      5690    677  ## COG0811 Biopolymer transport proteins
     7     1 Op  7   7/0.000   -    CDS       5687 -      5977    208  ## COG0824 Predicted thioesterase
                               -    Prom      6132 -      6191    3.2 
                               -    Term      6184 -      6219    4.3 
     8     1 Op  8   2/0.600   -    CDS       6241 -      6534    252  ## COG3790 Predicted membrane protein
     9     1 Op  9   3/0.600   -    CDS       6534 -      6647    138  ## COG4890 Predicted outer membrane lipoprotein
    10     1 Op 10  31/0.000   -    CDS       6662 -      7801   1447  ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2
    11     1 Op 11     .       -    CDS       7817 -      9385   1742  ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1
                               -    Prom      9513 -      9572    7.7 
    12     2 Op  1     .       -    CDS       9980 -     10207     74  ## SSON_0684 hypothetical protein
    13     2 Op  2   2/0.600   -    CDS      10232 -     12865   1977  ## COG0383 Alpha-mannosidase
    14     2 Op  3     .       -    CDS      12883 -     14799   1760  ## COG1299 Phosphotransferase system, fructose-specific IIC component
                               -    Prom     14843 -     14902    4.5 
                               +    Prom     14858 -     14917    6.8 
    15     3 Tu  1     .       +    CDS      14968 -     15690    640  ## COG2188 Transcriptional regulators
                               +    Term     15752 -     15801    1.2 
                               -    Term     15689 -     15718    2.1 
    16     4 Op  1  39/0.000   -    CDS      15794 -     16663   1000  ## COG0074 Succinyl-CoA synthetase, alpha subunit
    17     4 Op  2   6/0.000   -    CDS      16663 -     17829   1526  ## COG0045 Succinyl-CoA synthetase, beta subunit
    18     4 Op  3  21/0.000   -    CDS      18104 -     19321   1731  ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
    19     4 Op  4   5/0.000   -    CDS      19336 -     22137   2823  ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
                               -    Prom     22306 -     22365    4.5 
    20     4 Op  5  36/0.000   -    CDS      22438 -     23154    652  ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
    21     4 Op  6  22/0.000   -    CDS      23170 -     24936   2105  ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
    22     4 Op  7  24/0.000   -    CDS      24936 -     25283    506  ## COG2142 Succinate dehydrogenase, hydrophobic anchor subunit
    23     4 Op  8     .       -    CDS      25277 -     25681    235  ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
                               -    Prom     25888 -     25947    5.5 
    24     5 Tu  1     .       -    CDS      26202 -     26387     60  ## ECP_0732 hypothetical protein
                               -    Prom     26606 -     26665    2.9 
                               +    Prom     26283 -     26342    3.9 
    25     6 Tu  1   3/0.600   +    CDS      26375 -     27658   1497  ## COG0372 Citrate synthase
                               +    Term     27685 -     27724    7.5 
    26     7 Op  1   6/0.000   +    CDS      28048 -     28614    453  ## COG3539 P pilus assembly protein, pilin FimA
                               +    Term     28625 -     28654    1.1 
    27     7 Op  2  10/0.000   +    CDS      28665 -     31121   1480  ## COG3188 P pilus assembly protein, porin PapC
    28     7 Op  3     .       +    CDS      31136 -     31864    611  ## COG3121 P pilus assembly protein, chaperone PapD
    29     7 Op  4     .       +    CDS      31924 -     32922    774  ## JW5098 predicted fimbrial-like adhesin protein
                               +    Term     32931 -     32970    9.4 
                               +    Prom     32956 -     33015    5.2 
    30     8 Tu  1     .       +    CDS      33074 -     34120    958  ## COG3180 Putative ammonia monooxygenase
                               +    Term     34308 -     34353    1.7 
    31     9 Op  1   3/0.600   -    CDS      34117 -     34908    683  ## COG0266 Formamidopyrimidine-DNA glycosylase
    32     9 Op  2   8/0.000   -    CDS      34944 -     35678    671  ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B
    33     9 Op  3  21/0.000   -    CDS      35668 -     36600    950  ## COG1984 Allophanate hydrolase subunit 2
    34     9 Op  4   4/0.400   -    CDS      36594 -     37250    593  ## COG2049 Allophanate hydrolase subunit 1
    35     9 Op  5     .       -    CDS      37273 -     38016    824  ## COG0327 Uncharacterized conserved protein
                               -    Prom     38134 -     38193    3.0 
                               +    Prom     38115 -     38174    3.0 
    36    10 Tu  1     .       +    CDS      38287 -     39768   1837  ## COG3104 Dipeptide/tripeptide permease
                               -    Term     39733 -     39781   -0.9 
    37    11 Op  1   5/0.000   -    CDS      39918 -     41336    941  ## COG0415 Deoxyribodipyrimidine photolyase
    38    11 Op  2     .       -    CDS      41333 -     41842    354  ## COG3272 Uncharacterized conserved protein
                               -    Prom     41864 -     41923    4.0 
Predicted protein(s)
>gi|223713566|gb|ACDM01000032.1| GENE     1       454  -      1245    653    263 aa, chain - ## HITS:1  COG:ybgF KEGG:ns NR:ns ## COG: ybgF COG1729 # Protein_GI_number: 16128717 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     263       1     263     263     395  100.0  1e-110
MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ
QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAA
STTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLP
NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY
QQVISKYPGTDGAKQAQKRLNAM
>gi|223713566|gb|ACDM01000032.1| GENE     2      1255  -      1776    668    173 aa, chain - ## HITS:1  COG:ECs0776 KEGG:ns NR:ns ## COG: ECs0776 COG2885 # Protein_GI_number: 15830030 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 1     173       1     173     173     296  100.0  2e-80
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARL
QMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIS
LGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
>gi|223713566|gb|ACDM01000032.1| GENE     3      1811  -      3103   1281    430 aa, chain - ## HITS:1  COG:ECs0775 KEGG:ns NR:ns ## COG: ECs0775 COG0823 # Protein_GI_number: 15830029 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Escherichia coli O157:H7 # 1     430       1     430     430     820  100.0  0
MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAA
DLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVD
TGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY
ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA
SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ
NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK
QDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ
VKFPAWSPYL
>gi|223713566|gb|ACDM01000032.1| GENE     4      3236  -      4303   1249    355 aa, chain - ## HITS:1  COG:tolA KEGG:ns NR:ns ## COG: tolA COG3064 # Protein_GI_number: 16128714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane protein involved in colicin uptake # Organism: Escherichia coli K12 # 1     355      67     421     421     199  100.0  7e-51
MQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ
AELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKA
EAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAAD
KKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGKN
APKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLR
IKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP
>gi|223713566|gb|ACDM01000032.1| GENE     5      4566  -      4994    483    142 aa, chain - ## HITS:1  COG:ECs0773 KEGG:ns NR:ns ## COG: ECs0773 COG0848 # Protein_GI_number: 15830027 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Escherichia coli O157:H7 # 11     142      11     142     142     207  100.0  4e-54
MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSND
NPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKANPKTVFLIGGAKDVPYDEI
IKALNLLHSAGVKSVGLMTQPI
>gi|223713566|gb|ACDM01000032.1| GENE     6      4998  -      5690    677    230 aa, chain - ## HITS:1  COG:ECs0772 KEGG:ns NR:ns ## COG: ECs0772 COG0811 # Protein_GI_number: 15830026 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Escherichia coli O157:H7 # 1     230       1     230     230     419  100.0  1e-117
MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGI
ELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNREL
ENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAI
GLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTVSESNKG
>gi|223713566|gb|ACDM01000032.1| GENE     7      5687  -      5977    208     96 aa, chain - ## HITS:1  COG:ECs0771 KEGG:ns NR:ns ## COG: ECs0771 COG0824 # Protein_GI_number: 15830025 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Escherichia coli O157:H7 # 1      96      39     134     134     177  100.0  3e-45
MLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN
AENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ
>gi|223713566|gb|ACDM01000032.1| GENE     8      6241  -      6534    252     97 aa, chain - ## HITS:1  COG:ECs0770 KEGG:ns NR:ns ## COG: ECs0770 COG3790 # Protein_GI_number: 15830024 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1      97       1      97      97     169  100.0  1e-42
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCA
GVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
>gi|223713566|gb|ACDM01000032.1| GENE     9      6534  -      6647    138     37 aa, chain - ## HITS:1  COG:STM0742 KEGG:ns NR:ns ## COG: STM0742 COG4890 # Protein_GI_number: 16764112 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Salmonella typhimurium LT2 # 1      36       1      36      37      57   86.0  5e-09
MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI
>gi|223713566|gb|ACDM01000032.1| GENE    10      6662  -      7801   1447    379 aa, chain - ## HITS:1  COG:ECs0769 KEGG:ns NR:ns ## COG: ECs0769 COG1294 # Protein_GI_number: 15830023 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Escherichia coli O157:H7 # 1     379       1     379     379     699  100.0  0
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN
QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD
WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI
ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA
SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA
CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW
KMFGRITKEDIERNTHSLY
>gi|223713566|gb|ACDM01000032.1| GENE    11      7817  -      9385   1742    522 aa, chain - ## HITS:1  COG:ECs0768 KEGG:ns NR:ns ## COG: ECs0768 COG1271 # Protein_GI_number: 15830022 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Escherichia coli O157:H7 # 1     522       2     523     523    1011  100.0  0
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG
INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
LGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVA
QVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSV
DTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRY
TPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKK
WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICG
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>gi|223713566|gb|ACDM01000032.1| GENE    12      9980  -     10207     74     75 aa, chain - ## HITS:1  COG:no KEGG:SSON_0684 NR:ns ## KEGG: SSON_0684 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      75       1      75      75     144  100.0  7e-34
MRGQIVDKGRFVHAGYGMNALFGLQKQANSIYCRDDVDTGKRSASGNFAFIFTLKPRICG
FIFNKIITLGELIII
>gi|223713566|gb|ACDM01000032.1| GENE    13     10232  -     12865   1977    877 aa, chain - ## HITS:1  COG:ybgG KEGG:ns NR:ns ## COG: ybgG COG0383 # Protein_GI_number: 16128707 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Escherichia coli K12 # 1     877       1     877     877    1824  100.0  0
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILE
DYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMK
IGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPL
GYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDKLREI
YPQRKFVMSRFEEVFEKIEAQRDNLATLKGEFIDGKYMRVHRTIGSTRMDIKIAHARIEN
KIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELA
EDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRASQFNLRDDRGQ
PVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQINQIVPSMGYRTLYIEANQPGNVI
AAKSDAEGILENAFWQIALNEDGSLQLVDKDSGVRYDRVLQIEESSDDGDEYDYSPAKEE
WVITAANAKPQCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSR
RIDVDINLDNQADDHRLRVLVPTPFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAP
VPVWNMLNYVALQEGRNGMAVFSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPG
RPSGIKMPVPDSQLRGLLSCRLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKL
NKAGFNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVIS
CSETMMDEHITTEENQGSNLSGPFLPGQSRTFSYRLA
>gi|223713566|gb|ACDM01000032.1| GENE    14     12883  -     14799   1760    638 aa, chain - ## HITS:1  COG:hrsA_3 KEGG:ns NR:ns ## COG: hrsA_3 COG1299 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 279     638       1     360     360     640  100.0  0
MNLTTLTHRDALCLNARFTSREEAIHALTQRLAALGKISSTEQFLEEVYRRESLGPTALG
EGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMQLLT
ALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTY
MAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIP
ALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPL
IVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLAD
KPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVL
GTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKAAY
AFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGIT
EGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAA
IGWFGAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP
>gi|223713566|gb|ACDM01000032.1| GENE    15     14968  -     15690    640    240 aa, chain + ## HITS:1  COG:farR KEGG:ns NR:ns ## COG: farR COG2188 # Protein_GI_number: 16128705 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     240       1     240     240     442  100.0  1e-124
MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILE
SIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQITPQ
DRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEI
IPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR
>gi|223713566|gb|ACDM01000032.1| GENE    16     15794  -     16663   1000    289 aa, chain - ## HITS:1  COG:ECs0754 KEGG:ns NR:ns ## COG: ECs0754 COG0074 # Protein_GI_number: 15830008 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1     289       1     289     289     508  100.0  1e-144
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREA
VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI
GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG
DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP
KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>gi|223713566|gb|ACDM01000032.1| GENE    17     16663  -     17829   1526    388 aa, chain - ## HITS:1  COG:ECs0753 KEGG:ns NR:ns ## COG: ECs0753 COG0045 # Protein_GI_number: 15830007 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Escherichia coli O157:H7 # 1     388       1     388     388     728  100.0  0
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV
KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR
VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI
FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDP
REAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTE
AFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKK
LADSGLNIIAAKGLTDAAQQVVAAVEGK
>gi|223713566|gb|ACDM01000032.1| GENE    18     18104  -     19321   1731    405 aa, chain - ## HITS:1  COG:STM0737 KEGG:ns NR:ns ## COG: STM0737 COG0508 # Protein_GI_number: 16764107 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Salmonella typhimurium LT2 # 1     405       1     402     402     717   96.0  0
MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAV
LEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRR
LLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVP
MTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVK
AVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIK
ELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNG
QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>gi|223713566|gb|ACDM01000032.1| GENE    19     19336  -     22137   2823    933 aa, chain - ## HITS:1  COG:ECs0751 KEGG:ns NR:ns ## COG: ECs0751 COG0567 # Protein_GI_number: 15830005 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Escherichia coli O157:H7 # 1     933       1     933     933    1944  100.0  0
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS
QTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKV
ADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEE
KRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLK
EMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMG
FSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAV
TGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIF
HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKH
PTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHE
WDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLA
YATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLS
EEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH
GYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKS
LLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDV
AIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLR
YAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>gi|223713566|gb|ACDM01000032.1| GENE    20     22438  -     23154    652    238 aa, chain - ## HITS:1  COG:sdhB KEGG:ns NR:ns ## COG: sdhB COG0479 # Protein_GI_number: 16128699 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Escherichia coli K12 # 1     238       1     238     238     494  100.0  1e-140
MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVC
GSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPY
LLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYR
FLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>gi|223713566|gb|ACDM01000032.1| GENE    21     23170  -     24936   2105    588 aa, chain - ## HITS:1  COG:ECs0748 KEGG:ns NR:ns ## COG: ECs0748 COG1053 # Protein_GI_number: 15830002 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Escherichia coli O157:H7 # 1     588       1     588     588    1153  100.0  0
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNT
HEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFG
GQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGC
TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ
FHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREG
RGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGI
PTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ
ESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAM
AKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAH
SRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>gi|223713566|gb|ACDM01000032.1| GENE    22     24936  -     25283    506    115 aa, chain - ## HITS:1  COG:ECs0747 KEGG:ns NR:ns ## COG: ECs0747 COG2142 # Protein_GI_number: 15830001 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase, hydrophobic anchor subunit # Organism: Escherichia coli O157:H7 # 1     115       1     115     115     148   99.0  3e-36
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVF
TLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>gi|223713566|gb|ACDM01000032.1| GENE    23     25277  -     25681    235    134 aa, chain - ## HITS:1  COG:ECs0746 KEGG:ns NR:ns ## COG: ECs0746 COG2009 # Protein_GI_number: 15830000 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Escherichia coli O157:H7 # 6     134       1     129     129     220  100.0  4e-58
MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSP
EGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFV
ITVVLSLLAGVLVW
>gi|223713566|gb|ACDM01000032.1| GENE    24     26202  -     26387     60     61 aa, chain - ## HITS:1  COG:no KEGG:ECP_0732 NR:ns ## KEGG: ECP_0732 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1      61       3      63      63     121   96.0  7e-27
MYQPFKVSLAPYCVRLPELKFAFAHQPGFTRFLFGSPLCERGENLGTELWALAGKGSIDD
E
>gi|223713566|gb|ACDM01000032.1| GENE    25     26375  -     27658   1497    427 aa, chain + ## HITS:1  COG:gltA KEGG:ns NR:ns ## COG: gltA COG0372 # Protein_GI_number: 16128695 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Escherichia coli K12 # 1     427       1     427     427     901  100.0  0
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFI
DGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITR
LFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYS
IGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVR
TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFR
LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYP
NVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRD
FKSDIKR
>gi|223713566|gb|ACDM01000032.1| GENE    26     28048  -     28614    453    188 aa, chain + ## HITS:1  COG:ybgD KEGG:ns NR:ns ## COG: ybgD COG3539 # Protein_GI_number: 16128694 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     188       1     188     188     352  100.0  3e-97
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTT
THINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAG
EATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTAN
ATYVLDYK
>gi|223713566|gb|ACDM01000032.1| GENE    27     28665  -     31121   1480    818 aa, chain + ## HITS:1  COG:ybgQ KEGG:ns NR:ns ## COG: ybgQ COG3188 # Protein_GI_number: 16128693 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     818       1     818     818    1579  100.0  0
MDTVNIYRLSFVSCLVMAMPCAMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSV
AVNNNKISNGQKINWQKKGDKTIPCINDSLVDKFGLKPDIRQSLPQIDRCIDFSSRPEML
FNFDQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTN
LNAYGTAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTYLFRPLPQLGSKLTLGETDF
SSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPG
PFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSH
QTENETFFSNEVSWGMLSNTSLYGGLLISDDDYHSAAMGIGQNMLWLGALSFDVTWASSH
FDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTT
HYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTIHRMSWNDTLDERNSWGMSAGLQS
DRPDNGAQVSGNYQHLSSAGEWDISGTYAASDYSSVSSSWSGSFTATQYGAAFHRRSSTN
EPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWL
SGVAENQLFTVVWGEQSCIIHLPERLEDTTKRLILPCH
>gi|223713566|gb|ACDM01000032.1| GENE    28     31136  -     31864    611    242 aa, chain + ## HITS:1  COG:ybgP KEGG:ns NR:ns ## COG: ybgP COG3121 # Protein_GI_number: 16128692 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     242       1     242     242     478  100.0  1e-135
MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENE
KGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSS
DHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGR
NEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVE
AK
>gi|223713566|gb|ACDM01000032.1| GENE    29     31924  -     32922    774    332 aa, chain + ## HITS:1  COG:no KEGG:JW5098 NR:ns ## KEGG: JW5098 # Name: ybgO # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1     332      22     353     353     679  100.0  0
MALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHV
YAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQ
NKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQ
NLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQ
CTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVY
EKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
>gi|223713566|gb|ACDM01000032.1| GENE    30     33074  -     34120    958    348 aa, chain + ## HITS:1  COG:abrB KEGG:ns NR:ns ## COG: abrB COG3180 # Protein_GI_number: 16128690 # Func_class: R General function prediction only # Function: Putative ammonia monooxygenase # Organism: Escherichia coli K12 # 1     348      16     363     363     533  100.0  1e-151
MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRGITLQLPRSAFLAAQAI
LGCMIAQNLTGSILTTLAVNWPIVLAILLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPG
GAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRMMLGDNAEAVNQHIVWFPPVS
INLLLTILLAVVAGTVGCLLRLPSGTMLIPMLAGAVLQSGQLITIELPEWLLAMAYMAIG
WRIGLGFDKQILLRALRPLPQILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPGGL
DTVAVIAAGSNADMALIMAMQTLRLFSILLTGPAIARFISTYAPKRSA
>gi|223713566|gb|ACDM01000032.1| GENE    31     34117  -     34908    683    263 aa, chain - ## HITS:1  COG:nei KEGG:ns NR:ns ## COG: nei COG0266 # Protein_GI_number: 16128689 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Escherichia coli K12 # 1     263       1     263     263     545   99.0  1e-155
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFS
NDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTH
PFLQRVGPDVLDPNLTPEVVKERLLSPRFRNCQFAGLLLDQAFLAGLGNYLRVEILWQVG
LTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCER
CGSIIEKTTLSSRPFYWCPGCQH
>gi|223713566|gb|ACDM01000032.1| GENE    32     34944  -     35678    671    244 aa, chain - ## HITS:1  COG:ybgL KEGG:ns NR:ns ## COG: ybgL COG1540 # Protein_GI_number: 16128688 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Escherichia coli K12 # 1     244       1     244     244     442  100.0  1e-124
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSF
PDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLA
DAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGAL
IENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGI
VVAA
>gi|223713566|gb|ACDM01000032.1| GENE    33     35668  -     36600    950    310 aa, chain - ## HITS:1  COG:ybgK KEGG:ns NR:ns ## COG: ybgK COG1984 # Protein_GI_number: 16128687 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Escherichia coli K12 # 1     310       1     310     310     634  100.0  0
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGP
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFE
QLAWRLHNEN
>gi|223713566|gb|ACDM01000032.1| GENE    34     36594  -     37250    593    218 aa, chain - ## HITS:1  COG:ECs0736 KEGG:ns NR:ns ## COG: ECs0736 COG2049 # Protein_GI_number: 15829990 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Escherichia coli O157:H7 # 1     218       1     218     218     417  100.0  1e-117
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
>gi|223713566|gb|ACDM01000032.1| GENE    35     37273  -     38016    824    247 aa, chain - ## HITS:1  COG:ECs0735 KEGG:ns NR:ns ## COG: ECs0735 COG0327 # Protein_GI_number: 15829989 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     247       1     247     247     499  100.0  1e-141
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAV
IVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV
MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFID
SAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTF
IDIPNPA
>gi|223713566|gb|ACDM01000032.1| GENE    36     38287  -     39768   1837    493 aa, chain + ## HITS:1  COG:ybgH KEGG:ns NR:ns ## COG: ybgH COG3104 # Protein_GI_number: 16128684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1     493       1     493     493     921  100.0  0
MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYV
TPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN
VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA
GLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYAL
IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVN
RDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFC
ILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML
LSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQ
ALKFRNRALALES
>gi|223713566|gb|ACDM01000032.1| GENE    37     39918  -     41336    941    472 aa, chain - ## HITS:1  COG:phrB KEGG:ns NR:ns ## COG: phrB COG0415 # Protein_GI_number: 16128683 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Escherichia coli K12 # 1     472       1     472     472     972  100.0  0
MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN
GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA
LRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS
IEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSA
SLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIA
WTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDW
REGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWL
PELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKGK
>gi|223713566|gb|ACDM01000032.1| GENE    38     41333  -     41842    354    169 aa, chain - ## HITS:1  COG:ybgA KEGG:ns NR:ns ## COG: ybgA COG3272 # Protein_GI_number: 16128682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     169       1     169     169     315  100.0  2e-86
MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVFLAHSQPEYRKLGPFVA
DIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGYFRPHIDSTERQQLAALID
SYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRVINLRHSGVL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:57:12 2011
 Seq name: gi|223713565|gb|ACDM01000033.1| Escherichia sp. 4_1_40B cont1.33, whole genome shotgun sequence 
 Length of sequence - 1743 bp
 Number of predicted genes - 3, with homology - 2
 Number of transcription units - 3, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        445 -      1014     74  ## JW0693 hypothetical protein
                               +    Prom       823 -       882    3.9 
     2     2 Tu  1     .       +    CDS        931 -      1125    109  ## 
                               +    Term      1179 -      1210   -0.7 
     3     3 Tu  1     .       -    CDS       1011 -      1742    102  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713565|gb|ACDM01000033.1| GENE     1       445  -      1014     74    189 aa, chain - ## HITS:1  COG:no KEGG:JW0693 NR:ns ## KEGG: JW0693 # Name: ybfC # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     189       1     189     189     394  100.0  1e-109
MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI
GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF
RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ
HELIRSEEK
>gi|223713565|gb|ACDM01000033.1| GENE     2       931  -      1125    109     64 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MIFSLYFAISYNTKTNKYHQQKEQNSFHFLIPLDVLCFILAKISPKSSIPAVAGPSGLLM
SGNK
>gi|223713565|gb|ACDM01000033.1| GENE     3      1011  -      1742    102    243 aa, chain - ## HITS:1  COG:ECs0729 KEGG:ns NR:ns ## COG: ECs0729 COG3209 # Protein_GI_number: 15829983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 1     243    1157    1399    1399     496   98.0  1e-140
LVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGR
YITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPD
IAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDT
KTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRG
IRK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:57:20 2011
 Seq name: gi|223713564|gb|ACDM01000034.1| Escherichia sp. 4_1_40B cont1.34, whole genome shotgun sequence 
 Length of sequence - 1414 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 2, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          3 -       255     74  ## COG3209 Rhs family protein
     2     2 Op  1     .       -    CDS        373 -       630    120  ## B21_00650 hypothetical protein
     3     2 Op  2     .       -    CDS        699 -      1412    190  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713564|gb|ACDM01000034.1| GENE     1         3  -       255     74     84 aa, chain - ## HITS:1  COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1      84     923    1006    1397     172  100.0  2e-43
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQ
YAEPLVESRYLYDPLGRRVAKRVW
>gi|223713564|gb|ACDM01000034.1| GENE     2       373  -       630    120     85 aa, chain - ## HITS:1  COG:no KEGG:B21_00650 NR:ns ## KEGG: B21_00650 # Name: ybfB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      85      24     108     108     124  100.0  7e-28
MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMA
IIIWLYFLSGGYIQWFVLSKRIINK
>gi|223713564|gb|ACDM01000034.1| GENE     3       699  -      1412    190    237 aa, chain - ## HITS:1  COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     237    1161    1397    1397     518  100.0  1e-147
EGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQ
DPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMGGTGERSGPDIWGNPFYHQYL
CVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAGRCDLVETDNSCVENCLKGKF
KEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKMKCSGNNIGRFIRFVFTGVM
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:57:23 2011
 Seq name: gi|223713563|gb|ACDM01000035.1| Escherichia sp. 4_1_40B cont1.35, whole genome shotgun sequence 
 Length of sequence - 1384 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          3 -      1302    712  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713563|gb|ACDM01000035.1| GENE     1         3  -      1302    712    433 aa, chain - ## HITS:1  COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     433     346     778    1397     852  100.0  0
MVAHRHTGRPEICYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEG
GLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASA
FYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDAT
GSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVK
DTQGHETRYEYNAAGDLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIR
LTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRL
THRTVNGETAERWQYDERGWLTDISHISEGHRVTVHYGYDSKGRLASEHLTVHHPQTNEL
LWQHETRHAYNAQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:57:46 2011
 Seq name: gi|223713562|gb|ACDM01000036.1| Escherichia sp. 4_1_40B cont1.36, whole genome shotgun sequence 
 Length of sequence - 77386 bp
 Number of predicted genes - 71, with homology - 71
 Number of transcription units - 36, operones - 16 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       332 -       374    8.3 
     1     1 Tu  1     .       -    CDS        396 -       602    253  ## ECO103_0695 hypothetical protein
                               -    Prom       773 -       832    9.8 
                               +    Prom       641 -       700    5.2 
     2     2 Op  1     .       +    CDS        801 -      1004    106  ## EcE24377A_0725 K+-transporting ATPase, F subunit (EC:3.6.3.12)
     3     2 Op  2  20/0.000   +    CDS       1004 -      2677   1901  ## COG2060 K+-transporting ATPase, A chain
     4     2 Op  3  18/0.000   +    CDS       2700 -      4748   2538  ## COG2216 High-affinity K+ transport system, ATPase chain B
     5     2 Op  4  15/0.000   +    CDS       4757 -      5329    462  ## COG2156 K+-transporting ATPase, c chain
     6     2 Op  5  16/0.000   +    CDS       5322 -      8006   2355  ## COG2205 Osmosensitive K+ channel histidine kinase
     7     2 Op  6     .       +    CDS       8078 -      8680    642  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               +    Term      8719 -      8750   -0.7 
                               -    Term      8707 -      8738   -0.7 
     8     3 Tu  1     .       -    CDS       8896 -      9153     74  ## ECB_00650 hypothetical protein
                               -    Prom      9242 -      9301    4.0 
                               +    Prom      9071 -      9130    3.0 
     9     4 Op  1  10/0.000   +    CDS       9276 -     11474   2016  ## COG1982 Arginine/lysine/ornithine decarboxylases
    10     4 Op  2     .       +    CDS      11471 -     12790   1607  ## COG0531 Amino acid transporters
                               +    Term     12808 -     12839    2.5 
                               +    Prom     12989 -     13048    5.3 
    11     5 Tu  1     .       +    CDS      13139 -     13789    319  ## ECB_00647 hypothetical protein
                               +    Term     13800 -     13836    0.0 
    12     6 Tu  1     .       -    CDS      13830 -     14324     89  ## B21_00637 hypothetical protein
                               -    Prom     14418 -     14477    4.3 
                               -    Term     14488 -     14519    3.2 
    13     7 Op  1   6/0.333   -    CDS      14538 -     16178   1953  ## COG0033 Phosphoglucomutase
    14     7 Op  2     .       -    CDS      16204 -     16749    416  ## COG3057 Negative regulator of replication initiationR
                               -    Prom     16886 -     16945    4.4 
                               +    Prom     16842 -     16901    2.4 
    15     8 Op  1     .       +    CDS      16934 -     17698    691  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
    16     8 Op  2     .       +    CDS      17769 -     18131    421  ## LF82_2603 uncharacterized protein YbfE
                               +    Prom     18155 -     18214    2.9 
    17     9 Tu  1     .       +    CDS      18271 -     18801    807  ## COG0716 Flavodoxins
                               +    Term     18807 -     18846    9.1 
                               +    Prom     18960 -     19019    7.0 
    18    10 Tu  1     .       +    CDS      19090 -     19536    492  ## COG0735 Fe2+/Zn2+ uptake regulation proteins
                               +    Term     19556 -     19585    2.1 
                               -    Term     19588 -     19619    0.1 
    19    11 Op  1     .       -    CDS      19620 -     19946    367  ## ECIAI39_0639 putative lipoprotein
    20    11 Op  2     .       -    CDS      19996 -     21402   1503  ## JW0667 predicted outer membrane porin
                               -    Term     21750 -     21778    1.3 
    21    12 Tu  1     .       -    CDS      21979 -     23643   2032  ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases
                               -    Prom     23726 -     23785    7.7 
                               -    Term     23757 -     23800    6.6 
    22    13 Tu  1     .       -    CDS      23846 -     25792   2276  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               +    Prom     25826 -     25885    5.4 
    23    14 Op  1  12/0.000   +    CDS      26125 -     26925    926  ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
                               +    Term     26936 -     26973    2.1 
    24    14 Op  2   7/0.111   +    CDS      26985 -     28133   1290  ## COG1820 N-acetylglucosamine-6-phosphate deacetylase
    25    14 Op  3   5/0.556   +    CDS      28142 -     29362    261  ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase
    26    14 Op  4   5/0.556   +    CDS      29410 -     30162    812  ## COG0647 Predicted sugar phosphatases of the HAD superfamily
                               +    Prom     30409 -     30468    8.9 
    27    15 Tu  1     .       +    CDS      30559 -     32223   2042  ## COG0367 Asparagine synthase (glutamine-hydrolyzing)
                               +    Term     32231 -     32275   12.5 
                               +   TRNA      32603 -     32679   96.2  # Met CAT 0 0
                               +   TRNA      32689 -     32773   78.3  # Leu TAG 0 0
                               +   TRNA      32797 -     32871   74.3  # Gln TTG 0 0
                               +   TRNA      32906 -     32980   74.3  # Gln TTG 0 0
                               +   TRNA      32996 -     33072   96.2  # Met CAT 0 0
                               +   TRNA      33120 -     33194   75.8  # Gln CTG 0 0
                               +   TRNA      33232 -     33306   75.8  # Gln CTG 0 0
                               -    Term     33304 -     33332    1.0 
    28    16 Tu  1     .       -    CDS      33460 -     34635   1115  ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
                               -    Prom     34686 -     34745    3.1 
                               +    Prom     34685 -     34744    2.5 
    29    17 Op  1  10/0.000   +    CDS      34781 -     36205    438  ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase
                               +    Term     36212 -     36244    4.5 
                               +    Prom     36248 -     36307    2.1 
    30    17 Op  2  17/0.000   +    CDS      36358 -     37398   1257  ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase
    31    17 Op  3  11/0.000   +    CDS      37395 -     37862    725  ## COG0319 Predicted metal-dependent hydrolase
                               +    Term     37893 -     37928    2.4 
    32    17 Op  4   9/0.000   +    CDS      37952 -     38830    995  ## COG4535 Putative Mg2+ and Co2+ transporter CorC
    33    17 Op  5   4/0.667   +    CDS      38855 -     40393   1966  ## COG0815 Apolipoprotein N-acyltransferase
    34    18 Op  1  31/0.000   +    CDS      40790 -     41698   1173  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
                               +    Term     41821 -     41860    9.1 
                               +    Prom     41764 -     41823    2.0 
    35    18 Op  2  17/0.000   +    CDS      41868 -     42608    859  ## COG0765 ABC-type amino acid transport system, permease component
    36    18 Op  3  34/0.000   +    CDS      42608 -     43282    672  ## COG0765 ABC-type amino acid transport system, permease component
    37    18 Op  4   4/0.667   +    CDS      43282 -     44007    552  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
    38    19 Op  1   3/0.778   +    CDS      44125 -     45060   1021  ## COG1957 Inosine-uridine nucleoside N-ribohydrolase
                               +    Term     45072 -     45122    8.0 
                               +    Prom     45065 -     45124    2.3 
    39    19 Op  2     .       +    CDS      45144 -     46814   1241  ## COG0443 Molecular chaperone
                               +    Term     46913 -     46968    0.2 
                               -    Term     46806 -     46855    9.0 
    40    20 Op  1     .       -    CDS      46874 -     48325    911  ## JW0644 Hsc56 co-chaperone of HscC
    41    20 Op  2     .       -    CDS      48322 -     49029    478  ## JW0643 predicted tRNA ligase
                               -    Prom     49113 -     49172   10.2 
                               +    Prom     49038 -     49097    9.9 
    42    21 Tu  1     .       +    CDS      49146 -     49685    393  ## COG0790 FOG: TPR repeat, SEL1 subfamily
    43    22 Op  1     .       -    CDS      49695 -     51122    811  ## JW0641 predicted chaperone
    44    22 Op  2     .       -    CDS      51119 -     51826    275  ## JW0640 hypothetical protein
                               -    Prom     51899 -     51958    7.4 
                               +    Prom     51841 -     51900    4.9 
    45    23 Tu  1     .       +    CDS      51990 -     52967    857  ## COG0790 FOG: TPR repeat, SEL1 subfamily
                               +    Term     52980 -     53015    4.3 
                               -    Term     52852 -     52884    3.1 
    46    24 Tu  1     .       -    CDS      53037 -     53519    488  ## APECO1_1413 hypothetical protein
                               -    Prom     53601 -     53660    3.1 
                               +    Prom     53501 -     53560    3.9 
    47    25 Op  1   9/0.000   +    CDS      53613 -     56336   3241  ## COG0495 Leucyl-tRNA synthetase
    48    25 Op  2  12/0.000   +    CDS      56447 -     56932    495  ## COG2980 Rare lipoprotein B
    49    25 Op  3   7/0.111   +    CDS      56932 -     57963    863  ## COG1466 DNA polymerase III, delta subunit
    50    25 Op  4   3/0.778   +    CDS      57965 -     58606    461  ## COG1057 Nicotinic acid mononucleotide adenylyltransferase
    51    25 Op  5   6/0.333   +    CDS      58630 -     59241    409  ## COG0406 Fructose-2,6-bisphosphatase
                               +    Prom     59406 -     59465    4.7 
    52    26 Op  1  14/0.000   +    CDS      59501 -     59818    310  ## COG0799 Uncharacterized homolog of plant Iojap protein
    53    26 Op  2   9/0.000   +    CDS      59822 -     60289    491  ## COG1576 Uncharacterized conserved protein
    54    26 Op  3  19/0.000   +    CDS      60320 -     62221   1978  ## COG0768 Cell division protein FtsI/penicillin-binding protein 2
    55    26 Op  4   8/0.000   +    CDS      62224 -     63336   1105  ## COG0772 Bacterial cell division membrane protein
    56    26 Op  5  12/0.000   +    CDS      63347 -     64435    915  ## COG0797 Lipoproteins
    57    26 Op  6   9/0.000   +    CDS      64502 -     65785   1439  ## COG1686 D-alanyl-D-alanine carboxypeptidase
                               +    Term     65843 -     65874    4.8 
                               +    Prom     65789 -     65848    2.3 
    58    26 Op  7   6/0.333   +    CDS      65895 -     66158    331  ## COG2921 Uncharacterized conserved protein
                               +    Prom     66167 -     66226    3.9 
    59    27 Tu  1     .       +    CDS      66259 -     66900    528  ## COG0321 Lipoate-protein ligase B
                               +    Term     66914 -     66947   -0.3 
                               +    Prom     66933 -     66992    5.5 
    60    28 Tu  1     .       +    CDS      67159 -     68112    682  ## COG0583 Transcriptional regulator
                               +    Prom     68176 -     68235    4.7 
    61    29 Tu  1     .       +    CDS      68321 -     69286    927  ## COG0320 Lipoate synthase
                               +    Term     69323 -     69352    2.1 
                               -    Term     69311 -     69340    2.1 
    62    30 Tu  1     .       -    CDS      69387 -     69596    178  ## PROTEIN SUPPORTED gi|90022866|ref|YP_528693.1| ribosomal protein L25
                               -    Prom     69637 -     69696    3.7 
    63    31 Op  1     .       -    CDS      69719 -     70282    611  ## COG0388 Predicted amidohydrolase
    64    31 Op  2     .       -    CDS      70279 -     70506    290  ## COG0388 Predicted amidohydrolase
                               -    Prom     70584 -     70643    2.7 
                               +    Prom     70481 -     70540    5.2 
    65    32 Tu  1     .       +    CDS      70599 -     70982    223  ## COG0239 Integral membrane protein possibly involved in chromosome condensation
                               +    Term     70996 -     71024    0.6 
                               -    Term     70982 -     71012    1.0 
    66    33 Op  1     .       -    CDS      71036 -     71245    317  ## COG1278 Cold shock proteins
                               -    Prom     71359 -     71418    6.5 
                               -    Term     71259 -     71287   -0.0 
    67    33 Op  2     .       -    CDS      71420 -     71980    491  ## B21_00581 hypothetical protein
                               -    Prom     72213 -     72272    8.9 
                               +    Prom     72486 -     72545    6.9 
    68    34 Tu  1     .       +    CDS      72569 -     73954   1463  ## COG3069 C4-dicarboxylate transporter
                               +    Term     73963 -     73997    5.2 
                               -    Term     73945 -     73989    5.1 
    69    35 Op  1   9/0.000   -    CDS      73995 -     74675    263  ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9
    70    35 Op  2     .       -    CDS      74644 -     76302   1501  ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism
                               -    Prom     76354 -     76413    5.3 
                               +    Prom     76418 -     76477    9.5 
    71    36 Tu  1     .       +    CDS      76681 -     77386    543  ## COG3053 Citrate lyase synthetase
Predicted protein(s)
>gi|223713562|gb|ACDM01000036.1| GENE     1       396  -       602    253     68 aa, chain - ## HITS:1  COG:no KEGG:ECO103_0695 NR:ns ## KEGG: ECO103_0695 # Name: ybfA # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      68       1      68      68     117  100.0  1e-25
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQA
EKATGDFY
>gi|223713562|gb|ACDM01000036.1| GENE     2       801  -      1004    106     67 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_0725 NR:ns ## KEGG: EcE24377A_0725 # Name: kdpF # Def: K+-transporting ATPase, F subunit (EC:3.6.3.12) # Organism: E.coli_E24377A # Pathway: Two-component system [PATH:ecw02020] # 1      67       1      67      67      93  100.0  2e-18
MAFAIFILFLHPARRFLRNLCSQNSTLPVSLLGHWRCTVSAGVITGVLLVFLLLGYLVYA
LINAEAF
>gi|223713562|gb|ACDM01000036.1| GENE     3      1004  -      2677   1901    557 aa, chain + ## HITS:1  COG:kdpA KEGG:ns NR:ns ## COG: kdpA COG2060 # Protein_GI_number: 16128674 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, A chain # Organism: Escherichia coli K12 # 1     557       1     557     557     982   99.0  0
MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVERVLFRALGVSDREMNWK
QYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSG
ETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVP
VALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANS
SHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGDRRQGRMLLWAMSVIFVICVGVVMW
AEVQGNPHLLALGTDSSINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGM
VPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKLTALA
ILVTPTLVLMGAALAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPF
WNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTLPTHGPLFVGLLIGTVLLVGA
LTFIPALALGPVAEYLS
>gi|223713562|gb|ACDM01000036.1| GENE     4      2700  -      4748   2538    682 aa, chain + ## HITS:1  COG:ECs0725 KEGG:ns NR:ns ## COG: ECs0725 COG2216 # Protein_GI_number: 15829979 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity K+ transport system, ATPase chain B # Organism: Escherichia coli O157:H7 # 1     682       1     682     682    1246   99.0  0
MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTCISIAMASGAMPG
NALFSAAISGWLWITVLFANFAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADK
VPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGT
RILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLLATATLW
PFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGD
VDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLADAAQLASLADETPEGRSIVILAKQRF
NLRERDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKV
DQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAA
IAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQ
AAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYP
QLNALNIMCLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLG
GLLVPFIGIKVIDLLLTVCGLV
>gi|223713562|gb|ACDM01000036.1| GENE     5      4757  -      5329    462    190 aa, chain + ## HITS:1  COG:kdpC KEGG:ns NR:ns ## COG: kdpC COG2156 # Protein_GI_number: 16128672 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, c chain # Organism: Escherichia coli K12 # 1     190       1     190     190     337  100.0  6e-93
MSGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGSLIREGDTVRGSALIGQNFT
GNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVEL
VTASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYIGQPVVNIVE
LNLALDKLDE
>gi|223713562|gb|ACDM01000036.1| GENE     6      5322  -      8006   2355    894 aa, chain + ## HITS:1  COG:kdpD KEGG:ns NR:ns ## COG: kdpD COG2205 # Protein_GI_number: 16128671 # Func_class: T Signal transduction mechanisms # Function: Osmosensitive K+ channel histidine kinase # Organism: Escherichia coli K12 # 1     894       1     894     894    1768  100.0  0
MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVV
ETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALILMDELAHSNAPGSR
HPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLV
DLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIALRELALRRTADRVDEQMRAWRGH
PGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASRLGSVWHAVYVETPALHRLPEKKRR
AILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIILGRPASRRWWRRETFADRL
ARIAPDLDQVLVALDEPPARTINNAPDNRSFKDKWRVQIQGCVVAAALCAVITLIAMQWL
MAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFFIAPRGTLAVSDVQYLLT
FAVMLTVGLVIGNLTAGVRYQARVARYREQRTRHLYEMSKALAVGRSPQDIAATSEQFIA
STFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQIL
PLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTASEEQARMASER
EQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNN
LLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFER
VLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKES
AVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM
>gi|223713562|gb|ACDM01000036.1| GENE     7      8078  -      8680    642    200 aa, chain + ## HITS:1  COG:kdpE KEGG:ns NR:ns ## COG: kdpE COG0745 # Protein_GI_number: 16128670 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     200      26     225     225     389  100.0  1e-108
MRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEES
DKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHR
GEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ
DPARPRHFITETGIGYRFML
>gi|223713562|gb|ACDM01000036.1| GENE     8      8896  -      9153     74     85 aa, chain - ## HITS:1  COG:no KEGG:ECB_00650 NR:ns ## KEGG: ECB_00650 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      85       1      85      85     169  100.0  3e-41
MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVGRLTGIEEVKVEAIAMS
KLHNMSCPPYMGHSAAVIFHLIYLS
>gi|223713562|gb|ACDM01000036.1| GENE     9      9276  -     11474   2016    732 aa, chain + ## HITS:1  COG:speF KEGG:ns NR:ns ## COG: speF COG1982 # Protein_GI_number: 16128669 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1     732       1     732     732    1551   99.0  0
MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPV
FIATENQERVPAEYLPRISGVFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVN
QGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQ
QHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV
YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNA
RQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGF
SQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYPLFAALDINAKMHEGVSGRNM
WMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS
FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSIL
FLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMH
DLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALPY
PPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPR
DAQSTLLKGEKL
>gi|223713562|gb|ACDM01000036.1| GENE    10     11471  -     12790   1607    439 aa, chain + ## HITS:1  COG:potE KEGG:ns NR:ns ## COG: potE COG0531 # Protein_GI_number: 16128668 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     439       1     439     439     770  100.0  0
MSQAKSNKMGVVQLTILTMVNMMGSGIIMLPTKLAEVGTISIISWLVTAVGSMALAWAFA
KCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELLGASLS
PVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIPVVGLCIIGWFWFSPTLYVDS
WNPHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVENPERNVPIAVLGGTLGAAVIYIV
STNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKVIMALMVMSCCGSLLGWQFTIAQVF
KSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQSGLALMTISPSLNSQFNVLVNLAVVTN
IIPYILSMAALVIIQKVANVPPSKAKVANFVAFVGAMYSFYALYSSGEEAMLYGSIVTFL
GWTLYGLVSPRFELKNKHG
>gi|223713562|gb|ACDM01000036.1| GENE    11     13139  -     13789    319    216 aa, chain + ## HITS:1  COG:no KEGG:ECB_00647 NR:ns ## KEGG: ECB_00647 # Name: ybfGH # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     216       1     216     216     426  100.0  1e-118
MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAETALYQLQVTTKSPMGALVYG
SGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPIADDVAGGIFALNGGDLGE
DTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFT
FYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ
>gi|223713562|gb|ACDM01000036.1| GENE    12     13830  -     14324     89    164 aa, chain - ## HITS:1  COG:no KEGG:B21_00637 NR:ns ## KEGG: B21_00637 # Name: ybfP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     164       1     164     164     340  100.0  9e-93
MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTRGLTGSIAVNIAPFRCK
TNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPGWQCYTSFFMRVCQGKPGT
RPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKAINTH
>gi|223713562|gb|ACDM01000036.1| GENE    13     14538  -     16178   1953    546 aa, chain - ## HITS:1  COG:pgm KEGG:ns NR:ns ## COG: pgm COG0033 # Protein_GI_number: 16128664 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Escherichia coli K12 # 1     546       1     546     546    1081  100.0  0
MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAARHSFNEPH
ILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPT
PAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANAL
LADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSG
IEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLA
FANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPQWGKDVAVGKTLVSSAMIDRVVN
DLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAE
ITAVTGKNPQEHYNELAKRFGAPSYNRLQAAATSAQKAALSKLSPEMVSASTLAGDPITA
RLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVS
EVLKNA
>gi|223713562|gb|ACDM01000036.1| GENE    14     16204  -     16749    416    181 aa, chain - ## HITS:1  COG:seqA KEGG:ns NR:ns ## COG: seqA COG3057 # Protein_GI_number: 16128663 # Func_class: L Replication, recombination and repair # Function: Negative regulator of replication initiationR # Organism: Escherichia coli K12 # 1     181       1     181     181     344  100.0  5e-95
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK
PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY
FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT
I
>gi|223713562|gb|ACDM01000036.1| GENE    15     16934  -     17698    691    254 aa, chain + ## HITS:1  COG:ybfF KEGG:ns NR:ns ## COG: ybfF COG0596 # Protein_GI_number: 16128662 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1     254       1     254     254     500  100.0  1e-141
MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDMRNHGLSPRDP
VMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALASDRIDKLVAIDIAPVDYH
VRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWD
QYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEK
PDAVLRAIRRYLND
>gi|223713562|gb|ACDM01000036.1| GENE    16     17769  -     18131    421    120 aa, chain + ## HITS:1  COG:no KEGG:LF82_2603 NR:ns ## KEGG: LF82_2603 # Name: ybfE # Def: uncharacterized protein YbfE # Organism: E.coli_LF82 # Pathway: not_defined # 1     120       1     120     120     190   99.0  1e-47
MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRIN
KRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV
>gi|223713562|gb|ACDM01000036.1| GENE    17     18271  -     18801    807    176 aa, chain + ## HITS:1  COG:ECs0715 KEGG:ns NR:ns ## COG: ECs0715 COG0716 # Protein_GI_number: 15829969 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     348  100.0  3e-96
MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYG
EAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW
PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEILNA
>gi|223713562|gb|ACDM01000036.1| GENE    18     19090  -     19536    492    148 aa, chain + ## HITS:1  COG:ECs0714 KEGG:ns NR:ns ## COG: ECs0714 COG0735 # Protein_GI_number: 15829968 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Escherichia coli O157:H7 # 1     148       1     148     148     279  100.0  1e-75
MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN
QFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSDDSIEARQREIAAKHGI
RLTNHSLYLYGHCAEGDCREDEHAHEGK
>gi|223713562|gb|ACDM01000036.1| GENE    19     19620  -     19946    367    108 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_0639 NR:ns ## KEGG: ECIAI39_0639 # Name: ybfN # Def: putative lipoprotein # Organism: E.coli_IAI39 # Pathway: not_defined # 1     108       1     108     108     172   99.0  3e-42
MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE
KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK
>gi|223713562|gb|ACDM01000036.1| GENE    20     19996  -     21402   1503    468 aa, chain - ## HITS:1  COG:no KEGG:JW0667 NR:ns ## KEGG: JW0667 # Name: ybfM # Def: predicted outer membrane porin # Organism: E.coli_J # Pathway: not_defined # 1     468       1     468     468     874   99.0  0
MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDG
DKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAY
DEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF
DYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAF
GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGY
WAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
AMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDG
RAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF
>gi|223713562|gb|ACDM01000036.1| GENE    21     21979  -     23643   2032    554 aa, chain - ## HITS:1  COG:glnS KEGG:ns NR:ns ## COG: glnS COG0008 # Protein_GI_number: 16128656 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1     554       1     554     554    1169  100.0  0
MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKG
QCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLA
YVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMA
SPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL
YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR
GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGE
GEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKA
ERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVP
NPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN
RTVGLRDTWAKVGE
>gi|223713562|gb|ACDM01000036.1| GENE    22     23846  -     25792   2276    648 aa, chain - ## HITS:1  COG:ECs0709_1 KEGG:ns NR:ns ## COG: ECs0709_1 COG1263 # Protein_GI_number: 15829963 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 1     389       1     389     390     687   99.0  0
MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGV
ASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKL
PDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFI
NRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG
LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTG
ISLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLVMGVIFFAIYFVVFSLVIR
MFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAVGGTDNLKAIDACITRLRLTV
ADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP
ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVS
PAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILE
MDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIKK
>gi|223713562|gb|ACDM01000036.1| GENE    23     26125  -     26925    926    266 aa, chain + ## HITS:1  COG:ECs0708 KEGG:ns NR:ns ## COG: ECs0708 COG0363 # Protein_GI_number: 15829962 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli O157:H7 # 1     266       1     266     266     557   99.0  1e-159
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ
VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ
YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ
VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD
EPSTMELKVKTLRYFNELEAENIKDL
>gi|223713562|gb|ACDM01000036.1| GENE    24     26985  -     28133   1290    382 aa, chain + ## HITS:1  COG:ECs0707 KEGG:ns NR:ns ## COG: ECs0707 COG1820 # Protein_GI_number: 15829961 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Escherichia coli O157:H7 # 1     382       1     382     382     769  100.0  0
MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQL
NGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAK
HPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITKVTLAPEMVPAEV
ISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEAD
IYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV
DENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANL
TAFTPDFKITKTIVNGNEVVTQ
>gi|223713562|gb|ACDM01000036.1| GENE    25     28142  -     29362    261    406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 129     390      47     317     319 105  27 1e-21
MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG
LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER
TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE
ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG
NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN
TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN
>gi|223713562|gb|ACDM01000036.1| GENE    26     29410  -     30162    812    250 aa, chain + ## HITS:1  COG:ECs0705 KEGG:ns NR:ns ## COG: ECs0705 COG0647 # Protein_GI_number: 15829959 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Escherichia coli O157:H7 # 1     250       1     250     250     517  100.0  1e-147
MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAG
VDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETR
SYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPW
IIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWI
YPSVAEIDVI
>gi|223713562|gb|ACDM01000036.1| GENE    27     30559  -     32223   2042    554 aa, chain + ## HITS:1  COG:asnB KEGG:ns NR:ns ## COG: asnB COG0367 # Protein_GI_number: 16128650 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Escherichia coli K12 # 1     554       1     554     554    1145  100.0  0
MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGA
QPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQG
MFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSY
LWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDS
SIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHF
TVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY
FHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQD
KMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLET
ARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDD
PSGRAVGVHQSAYK
>gi|223713562|gb|ACDM01000036.1| GENE    28     33460  -     34635   1115    391 aa, chain - ## HITS:1  COG:ubiF KEGG:ns NR:ns ## COG: ubiF COG0654 # Protein_GI_number: 16128645 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     391       1     391     391     780  100.0  0
MTNQPTEIAIVGGGMVGGALALGLAQHGFAVTVIEHAEPAPFVADSQPDVRISAISAASV
SLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKLPLLGYMVENTVLQQALWQ
ALEAHPKVTLRVPGSLIALHRHDDLQELELKGGEVIRAKLVIGADGANSQVRQMAGIGVH
AWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPLFDNWASLVWYDSPARIRQLQNM
NMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQG
VNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSNNL
PPLRFMRNLGLMAAERAGVLKRQALKYALGL
>gi|223713562|gb|ACDM01000036.1| GENE    29     34781  -     36205    438    474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1     390       1     389     449 173  29 3e-42
MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF
HQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRG
DRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDD
ILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSH
PIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDI
QISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQ
RLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIG
KFVDVEITDVYPNSLRGKVVRTEDEMGLRVAETPESVIARTRKENDLGVGYYQP
>gi|223713562|gb|ACDM01000036.1| GENE    30     36358  -     37398   1257    346 aa, chain + ## HITS:1  COG:ECs0698 KEGG:ns NR:ns ## COG: ECs0698 COG1702 # Protein_GI_number: 15829952 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Escherichia coli O157:H7 # 1     346      14     359     359     644   99.0  0
MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRDNHFKLTGRPICVTAAA
DILRSLYVDTAPMRGQIQDIEPEQIHLAIKEARVLEQSAESVPEYGKAVNIKTKRGVIKP
RTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK
LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFII
LDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFN
FFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAALAAERKREEQEQK
>gi|223713562|gb|ACDM01000036.1| GENE    31     37395  -     37862    725    155 aa, chain + ## HITS:1  COG:ybeY KEGG:ns NR:ns ## COG: ybeY COG0319 # Protein_GI_number: 16128642 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     155       1     155     155     271  100.0  2e-73
MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIRVVDTAESHSLNLTYRG
KDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL
GYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE
>gi|223713562|gb|ACDM01000036.1| GENE    32     37952  -     38830    995    292 aa, chain + ## HITS:1  COG:ECs0696 KEGG:ns NR:ns ## COG: ECs0696 COG4535 # Protein_GI_number: 15829950 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorC # Organism: Escherichia coli O157:H7 # 1     292       1     292     292     508  100.0  1e-144
MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDSGQNDLIDEDTRDMLEG
VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK
DLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVT
IEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIG
GLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVKIPDDSPQPKLDE
>gi|223713562|gb|ACDM01000036.1| GENE    33     38855  -     40393   1966    512 aa, chain + ## HITS:1  COG:lnt KEGG:ns NR:ns ## COG: lnt COG0815 # Protein_GI_number: 16128640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Escherichia coli K12 # 1     512       1     512     512     996  100.0  0
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG
FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT
WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS
GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG
QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV
DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL
PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI
GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL
TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
>gi|223713562|gb|ACDM01000036.1| GENE    34     40790  -     41698   1173    302 aa, chain + ## HITS:1  COG:STM0665 KEGG:ns NR:ns ## COG: STM0665 COG0834 # Protein_GI_number: 16764042 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 1     302       7     308     308     547   93.0  1e-156
MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ
KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVER
QKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMR
IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK
DDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA
LN
>gi|223713562|gb|ACDM01000036.1| GENE    35     41868  -     42608    859    246 aa, chain + ## HITS:1  COG:gltJ KEGG:ns NR:ns ## COG: gltJ COG0765 # Protein_GI_number: 16128637 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1     246       1     246     246     465  100.0  1e-131
MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRF
LSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGL
FTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLV
KNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAFIMLVMTLVERKVRLP
GNMGGK
>gi|223713562|gb|ACDM01000036.1| GENE    36     42608  -     43282    672    224 aa, chain + ## HITS:1  COG:ECs0692 KEGG:ns NR:ns ## COG: ECs0692 COG0765 # Protein_GI_number: 15829946 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1     224       1     224     224     370  100.0  1e-102
MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYV
NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMVAFSMFEAAYYSEIIRAGI
QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF
FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRRTA
>gi|223713562|gb|ACDM01000036.1| GENE    37     43282  -     44007    552    241 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     239       1     242     245 217  45 2e-55
MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV
DGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKL
LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV
ELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSDRAKDFLAKIL
H
>gi|223713562|gb|ACDM01000036.1| GENE    38     44125  -     45060   1021    311 aa, chain + ## HITS:1  COG:ybeK KEGG:ns NR:ns ## COG: ybeK COG1957 # Protein_GI_number: 16128634 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1     311       1     311     311     625  100.0  1e-179
MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTD
IPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVT
IVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQS
GIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLH
DPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFV
DLLADRLKFYA
>gi|223713562|gb|ACDM01000036.1| GENE    39     45144  -     46814   1241    556 aa, chain + ## HITS:1  COG:ybeW KEGG:ns NR:ns ## COG: ybeW COG0443 # Protein_GI_number: 16128633 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli K12 # 1     556       1     556     556    1100   99.0  0
MDNAELAIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSR
RTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSLKEDAEEFLQRPIKDVVIS
VPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQQNTRSLVFDLGGGTFDV
TVLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRADVARTMLNESELAALYACVEAA
KCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLLNRLRVPIEQALRDARLKPSQIDSL
VLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIVALGAAIQAACRLRSEDIEEVILTDIC
PYSLGVEVNRQGVSGIFSPIIERNTTVPVSRVETYSTMHPEQDSITVNVYQGENHKVKNN
ILVESFDVPLKKTGAYQSIDIRFSYDINGLLEVDVLLEDGSVKSRVINHSPVTLSAQQIE
ESRTRLSALKIYPRDMLINRTFKAKLEELWARALGDEREEIGRVITDFDAALQSNDMARV
DEVRRRASDYLAIEIP
>gi|223713562|gb|ACDM01000036.1| GENE    40     46874  -     48325    911    483 aa, chain - ## HITS:1  COG:no KEGG:JW0644 NR:ns ## KEGG: JW0644 # Name: djlC # Def: Hsc56 co-chaperone of HscC # Organism: E.coli_J # Pathway: not_defined # 1     483       1     483     483     947  100.0  0
MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQAYEEALRLAVNPVEEA
DDEEKDAAAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNTWNMEDVDQLRWPLCAIAI
EARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAIQAGDCFDFLSLLEYPIALQN
QTVEYYFALERCCRYHPDYVTAFLAMEGPWLIPDDAKLHRKLLRWYSSVQTGMAELIPVA
QQWQTEEPESEDARYYLCAQRLYCGEGESLLADLCAYWESYPSTQADNLLLQWSKRHCPD
YFALLVMVIEARSMVDAQGQPLKYVPGESARTRLLWAEILHSGKLSPLGQSFIESLFFKR
KAWAWWKSRVGSETEQDSPFLDLYRVAEQVVLEAFPKQEMLARLNTRLEGGDAHPLEAIV
TRMLLTKVKLEPEDEDVDEPTPENHEEKNDEGEKPQSITSIIKISLTVLVIGYALGKIAM
LFS
>gi|223713562|gb|ACDM01000036.1| GENE    41     48322  -     49029    478    235 aa, chain - ## HITS:1  COG:no KEGG:JW0643 NR:ns ## KEGG: JW0643 # Name: ybeU # Def: predicted tRNA ligase # Organism: E.coli_J # Pathway: not_defined # 1     235       1     235     235     473  100.0  1e-132
MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFELSSSWGINNRDDLIQTIYQM
TDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYV
RMGFLSRVGVLNKWLTEEESLWLQSRVYVRAHHYYHSWMHYFSAYSLGRLYWQSSQCEDN
TSLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQSECPVTLKDVSDL
>gi|223713562|gb|ACDM01000036.1| GENE    42     49146  -     49685    393    179 aa, chain + ## HITS:1  COG:ECs0685 KEGG:ns NR:ns ## COG: ECs0685 COG0790 # Protein_GI_number: 15829939 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli O157:H7 # 1     179       6     184     184     343   99.0  1e-94
MYIFAIFIVAAITCISQPKKTTLRDKAMVNYAFDYLSSPGSLPFTTAATELSAIHGHSTS
QYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAIL
WYKEAAEQGYAHAQYTLGLIYRNGSGINVNHYESQKWLKLAAKQHYKNAERLLAGLPAH
>gi|223713562|gb|ACDM01000036.1| GENE    43     49695  -     51122    811    475 aa, chain - ## HITS:1  COG:no KEGG:JW0641 NR:ns ## KEGG: JW0641 # Name: djlB # Def: predicted chaperone # Organism: E.coli_J # Pathway: not_defined # 1     475       1     475     475     907  100.0  0
MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQAYEEALRIAQSPAKSV
WQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNYCSMEEIDELRWSLCTIAM
NTAHLSFECVVLLAERLRWLQEENTGEIDEEELESFLYAIAKGNVFNFQTILHLPVAVQN
DTIDFYQMFARIWSSHPQWLTLYLAQHRAVIIPDDAKLHRNLLRWYSAGRLDIPELLDYA
QSWRETEPDNEDAPYYEYAQRVYCGEGESLLAELCDYWREYPSTQADALMLQWCRQHRVD
YYPLLVMMIEARDLVNDQGKPLLYVPGDSARTRFHLYEILSDEKLSALGRSLVEMVLHKG
RKPRISLTRDTEHTLWPLYLVAKQLVQACQPTEESLMPIVSRLDAENRCPLEALIIRRLL
IQAANFTEKQTVEPEPQPQPMPVDDGGPGCLGIIKIIFYIFIFAGLIGKILHLFG
>gi|223713562|gb|ACDM01000036.1| GENE    44     51119  -     51826    275    235 aa, chain - ## HITS:1  COG:no KEGG:JW0640 NR:ns ## KEGG: JW0640 # Name: ybeR # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     235       1     235     235     471  100.0  1e-132
MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRM
IDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYV
RMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHL
PLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL
>gi|223713562|gb|ACDM01000036.1| GENE    45     51990  -     52967    857    325 aa, chain + ## HITS:1  COG:ybeQ KEGG:ns NR:ns ## COG: ybeQ COG0790 # Protein_GI_number: 16128627 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli K12 # 1     325       3     327     327     597  100.0  1e-170
MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQG
HCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEAPNYKEAV
VWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYED
GKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSV
GAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQAL
DLYRKVQSSGTRDVSQEIRETEDLL
>gi|223713562|gb|ACDM01000036.1| GENE    46     53037  -     53519    488    160 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1413 NR:ns ## KEGG: APECO1_1413 # Name: ybeL # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     160       1     160     160     305  100.0  2e-82
MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELTRTEVDELTRAVRRDLE
EFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVV
GLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
>gi|223713562|gb|ACDM01000036.1| GENE    47     53613  -     56336   3241    907 aa, chain + ## HITS:1  COG:leuS KEGG:ns NR:ns ## COG: leuS COG0495 # Protein_GI_number: 16128625 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Escherichia coli K12 # 48     907       1     860     860    1795  100.0  0
MNNPGIISTSSARKAVLTRTFGLCYADLKNHLNATFVAVLKTGPLAAMQEQYRPEEIESK
VQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNV
LQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYY
RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFI
KITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTF
MGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPL
TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQ
ALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIP
MVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTF
MESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM
VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELV
YTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRV
WKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM
NKLAKAPTDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEK
AMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGK
LLNLVVG
>gi|223713562|gb|ACDM01000036.1| GENE    48     56447  -     56932    495    161 aa, chain + ## HITS:1  COG:rlpB KEGG:ns NR:ns ## COG: rlpB COG2980 # Protein_GI_number: 16128624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rare lipoprotein B # Organism: Escherichia coli K12 # 1     161      33     193     193     273  100.0  8e-74
MKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRN
GQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAA
EQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN
>gi|223713562|gb|ACDM01000036.1| GENE    49     56932  -     57963    863    343 aa, chain + ## HITS:1  COG:holA KEGG:ns NR:ns ## COG: holA COG1466 # Protein_GI_number: 16128623 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Escherichia coli K12 # 1     343       1     343     343     605  100.0  1e-173
MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTD
WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKA
QENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLA
LAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEG
SEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQ
AVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLADVFIDG
>gi|223713562|gb|ACDM01000036.1| GENE    50     57965  -     58606    461    213 aa, chain + ## HITS:1  COG:nadD KEGG:ns NR:ns ## COG: nadD COG1057 # Protein_GI_number: 16128622 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Escherichia coli K12 # 1     213       1     213     213     415  100.0  1e-116
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHML
ELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEY
ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNIS
ATIIRERLQNGESCEDLLPEPVLTYINQQGLYR
>gi|223713562|gb|ACDM01000036.1| GENE    51     58630  -     59241    409    203 aa, chain + ## HITS:1  COG:phpB KEGG:ns NR:ns ## COG: phpB COG0406 # Protein_GI_number: 16128621 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Escherichia coli K12 # 1     203       1     203     203     409  100.0  1e-114
MRLWLIRHGETQANIDGLYSGHAPTPLTARGIEQAQNLHTLLHGVSFDLVLCSELERAQH
TARLVLSDRQLPVQIIPELNEMFFGDWEMRHHRDLMQEDAENYSAWCNDWQHAIPTNGEG
FQAFSQRVERFIARLSEFQHYQNILVVSHQGVLSLLIARLIGMPAEAMWHFRVDQGCWSA
IDINQKFATLRVLNSRAIGVENA
>gi|223713562|gb|ACDM01000036.1| GENE    52     59501  -     59818    310    105 aa, chain + ## HITS:1  COG:STM0642 KEGG:ns NR:ns ## COG: STM0642 COG0799 # Protein_GI_number: 16764019 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Salmonella typhimurium LT2 # 1     105       1     105     105     187   97.0  3e-48
MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR
AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS
>gi|223713562|gb|ACDM01000036.1| GENE    53     59822  -     60289    491    155 aa, chain + ## HITS:1  COG:ECs0674 KEGG:ns NR:ns ## COG: ECs0674 COG1576 # Protein_GI_number: 15829928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     155       1     155     155     304  100.0  4e-83
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQM
LAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW
SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
>gi|223713562|gb|ACDM01000036.1| GENE    54     60320  -     62221   1978    633 aa, chain + ## HITS:1  COG:ECs0673 KEGG:ns NR:ns ## COG: ECs0673 COG0768 # Protein_GI_number: 15829927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Escherichia coli O157:H7 # 1     633       1     633     633    1294   99.0  0
MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIK
LVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFR
KERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVS
KINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLK
EVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDG
ISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQL
PGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGID
LAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKV
PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYK
IAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMIMENGGAGPAV
GTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH
>gi|223713562|gb|ACDM01000036.1| GENE    55     62224  -     63336   1105    370 aa, chain + ## HITS:1  COG:ECs0672 KEGG:ns NR:ns ## COG: ECs0672 COG0772 # Protein_GI_number: 15829926 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Escherichia coli O157:H7 # 1     370       1     370     370     618  100.0  1e-177
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIM
VVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAV
PLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS
WRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGL
RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQT
TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIH
THRKMLSKSV
>gi|223713562|gb|ACDM01000036.1| GENE    56     63347  -     64435    915    362 aa, chain + ## HITS:1  COG:rlpA KEGG:ns NR:ns ## COG: rlpA COG0797 # Protein_GI_number: 16128616 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipoproteins # Organism: Escherichia coli K12 # 1     362       1     362     362     572  100.0  1e-163
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD
YQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYAR
ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP
GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSD
QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITT
AQ
>gi|223713562|gb|ACDM01000036.1| GENE    57     64502  -     65785   1439    427 aa, chain + ## HITS:1  COG:ZdacA KEGG:ns NR:ns ## COG: ZdacA COG1686 # Protein_GI_number: 15800346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli O157:H7 EDL933 # 25     427       1     403     403     825  100.0  0
MPAGSAFAIVGHFFNSITDVVVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKT
MIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETD
LVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQD
AFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKE
FTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKD
LKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKL
MFHHWFG
>gi|223713562|gb|ACDM01000036.1| GENE    58     65895  -     66158    331     87 aa, chain + ## HITS:1  COG:ECs0669 KEGG:ns NR:ns ## COG: ECs0669 COG2921 # Protein_GI_number: 15829923 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      87       1      87      87     157  100.0  5e-39
MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSI
TINATHIEQVETLYEELGKIDIVRMVL
>gi|223713562|gb|ACDM01000036.1| GENE    59     66259  -     66900    528    213 aa, chain + ## HITS:1  COG:ECs0668 KEGG:ns NR:ns ## COG: ECs0668 COG0321 # Protein_GI_number: 15829922 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Escherichia coli O157:H7 # 23     213       1     191     191     401  100.0  1e-112
MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHYPVFTQGQAGKAEHILM
PGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELVTLLEQTVVNTLAELGIEA
HPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGMEMAKIS
QWKPEATTNNIAPRLLENILALLNNPDFEYITA
>gi|223713562|gb|ACDM01000036.1| GENE    60     67159  -     68112    682    317 aa, chain + ## HITS:1  COG:ybeF KEGG:ns NR:ns ## COG: ybeF COG0583 # Protein_GI_number: 16128612 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 52     317       1     266     266     525   99.0  1e-149
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAI
SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTIT
IATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQ
HHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQI
NFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFS
LRDPILHGVIDVIRNAF
>gi|223713562|gb|ACDM01000036.1| GENE    61     68321  -     69286    927    321 aa, chain + ## HITS:1  COG:ECs0666 KEGG:ns NR:ns ## COG: ECs0666 COG0320 # Protein_GI_number: 15829920 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Escherichia coli O157:H7 # 1     321       1     321     321     657  100.0  0
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMR
KNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLA
QTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRAL
DILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGE
TNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAA
CGPFVRSSYHADLQAKGMEVK
>gi|223713562|gb|ACDM01000036.1| GENE    62     69387  -     69596    178     69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022866|ref|YP_528693.1| ribosomal protein L25 [Saccharophagus degradans 2-40] # 1      59       1      59      83 73  57 4e-12
VSMGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAAAKKGADVDL
QAEKLSHKE
>gi|223713562|gb|ACDM01000036.1| GENE    63     69719  -     70282    611    187 aa, chain - ## HITS:1  COG:ECs0664 KEGG:ns NR:ns ## COG: ECs0664 COG0388 # Protein_GI_number: 15829918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli O157:H7 # 1     187      76     262     262     363  100.0  1e-101
MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLL
EVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTT
CYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRR
FAPPQLL
>gi|223713562|gb|ACDM01000036.1| GENE    64     70279  -     70506    290     75 aa, chain - ## HITS:1  COG:ECs0664 KEGG:ns NR:ns ## COG: ECs0664 COG0388 # Protein_GI_number: 15829918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli O157:H7 # 1      66       1      66     262     126  100.0  8e-30
MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLARDDHDADLSVKSAQLL
EGEFLGLYGEKVNVT
>gi|223713562|gb|ACDM01000036.1| GENE    65     70599  -     70982    223    127 aa, chain + ## HITS:1  COG:crcB KEGG:ns NR:ns ## COG: crcB COG0239 # Protein_GI_number: 16128607 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Escherichia coli K12 # 1     127       1     127     127     200   99.0  5e-52
MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIGAFIIGIGFAWFSRMTN
IDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWL
FLASTAH
>gi|223713562|gb|ACDM01000036.1| GENE    66     71036  -     71245    317     69 aa, chain - ## HITS:1  COG:ECs0662 KEGG:ns NR:ns ## COG: ECs0662 COG1278 # Protein_GI_number: 15829916 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      69       1      69      69     124  100.0  4e-29
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG
PSAANVIAL
>gi|223713562|gb|ACDM01000036.1| GENE    67     71420  -     71980    491    186 aa, chain - ## HITS:1  COG:no KEGG:B21_00581 NR:ns ## KEGG: B21_00581 # Name: crcA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     186       1     186     186     351  100.0  6e-96
MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
WMRFQF
>gi|223713562|gb|ACDM01000036.1| GENE    68     72569  -     73954   1463    461 aa, chain + ## HITS:1  COG:ECs0660 KEGG:ns NR:ns ## COG: ECs0660 COG3069 # Protein_GI_number: 15829914 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1     461       1     461     461     633  100.0  0
MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAIMGHKVLPSSQASTGYS
ATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLM
IAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILAPTSGD
VVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKEHISHEMLDVSEITT
TAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLIASILEFLRSFNTQKVFSGLE
VAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVILTML
AAVTTGSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVVVAVAGM
AKISPFEVVKRTSVPVLVGLVIVIVATELMVPGTAAAVTGK
>gi|223713562|gb|ACDM01000036.1| GENE    69     73995  -     74675    263    226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 5     223       1     221     226 105  28 6e-22
MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL
PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR
FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA
ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG
>gi|223713562|gb|ACDM01000036.1| GENE    70     74644  -     76302   1501    552 aa, chain - ## HITS:1  COG:citA KEGG:ns NR:ns ## COG: citA COG3290 # Protein_GI_number: 16128602 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Escherichia coli K12 # 1     552       1     552     552    1111  100.0  0
MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTASFEDYLTLHVRDMAMNQ
AKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGDRHSIRLYHPNPEKIGYPM
QFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVVSIGYLVSKIDSWRAEFL
LPMAGVFVVLLGILMLLSWFLAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDP
HGYITAINRNARKMLGLSSPGRQWLGKPIVEVVRPADFFTEQIDEKRQDVVANFNGLSVI
ANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLL
QMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPGSQ
LSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGV
PESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKV
KPNDSSINPIDR
>gi|223713562|gb|ACDM01000036.1| GENE    71     76681  -     77386    543    235 aa, chain + ## HITS:1  COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1     235      30     264     381     489  100.0  1e-138
MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTRDEKLIACGGIAGNIIK
CVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYEALFRQCGFSTLTSVPGVM
VLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNGHRYLIQQAAAQCDWLHLFLV
KEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISRATFPCYFIKEQSVINHC
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:58:36 2011
 Seq name: gi|223713561|gb|ACDM01000037.1| Escherichia sp. 4_1_40B cont1.37, whole genome shotgun sequence 
 Length of sequence - 1341 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          2 -      1246   1379  ## COG3051 Citrate lyase, alpha subunit
Predicted protein(s)
>gi|223713561|gb|ACDM01000037.1| GENE     1         2  -      1246   1379    414 aa, chain + ## HITS:1  COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1     414      97     510     510     815   99.0  0
SSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSG
ELNIDVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPA
SIEQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQS
LARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRGASGG
HCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAER
LQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:58:49 2011
 Seq name: gi|223713560|gb|ACDM01000038.1| Escherichia sp. 4_1_40B cont1.38, whole genome shotgun sequence 
 Length of sequence - 38344 bp
 Number of predicted genes - 34, with homology - 34
 Number of transcription units - 21, operones - 7 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.091   +    CDS          3 -       212     82  ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase)
     2     1 Op  2   5/0.091   +    CDS        187 -      1065    610  ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase
     3     1 Op  3   4/0.636   +    CDS       1116 -      2579   1676  ## COG0471 Di- and tricarboxylate transporters
                               +    Term      2611 -      2652   10.1 
                               +    Prom      2596 -      2655    2.6 
     4     2 Tu  1   4/0.636   +    CDS       2675 -      3499    468  ## COG3719 Ribonuclease I
                               +    Term      3649 -      3683    5.0 
                               +    Prom      3583 -      3642    3.7 
     5     3 Tu  1     .       +    CDS       3729 -      4139    432  ## COG0782 Transcription elongation factor
                               +    Term      4176 -      4203    0.1 
     6     4 Tu  1     .       -    CDS       4370 -      5608    851  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
                               -    Prom      5633 -      5692    2.0 
     7     5 Tu  1     .       -    CDS       5727 -      5933    117  ## EcE24377A_0629 hypothetical protein
                               +    Prom      5734 -      5793    3.4 
     8     6 Tu  1     .       +    CDS       5829 -      6257    497  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
                               +    Term      6277 -      6318    6.2 
                               -    Term      6312 -      6347    5.5 
     9     7 Op  1  11/0.000   -    CDS       6378 -      7943    411  ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9
                               -    Term      8019 -      8050    4.1 
    10     7 Op  2     .       -    CDS       8188 -      8751    623  ## COG0450 Peroxiredoxin
                               -    Prom      8815 -      8874    3.9 
    11     8 Tu  1     .       +    CDS       9123 -      9869    717  ## COG1651 Protein-disulfide isomerase
                               +    Prom      9997 -     10056    6.2 
    12     9 Tu  1     .       +    CDS      10077 -     10979    469  ## COG0583 Transcriptional regulator
                               +    Prom     11022 -     11081    6.4 
    13    10 Op  1   8/0.000   +    CDS      11126 -     12346    693  ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase
    14    10 Op  2     .       +    CDS      12331 -     12948    542  ## COG1475 Predicted transcriptional regulators
                               +    Term     12963 -     13002    0.6 
                               -    Term     12874 -     12921    5.0 
    15    11 Tu  1     .       -    CDS      12949 -     14109   1001  ## COG0436 Aspartate/tyrosine/aromatic aminotransferase
                               -    Prom     14139 -     14198    5.2 
                               +    Prom     14113 -     14172    3.6 
    16    12 Tu  1     .       +    CDS      14218 -     15306   1125  ## COG0371 Glycerol dehydrogenase and related enzymes
                               +    Term     15391 -     15431   -0.4 
    17    13 Op  1   9/0.000   -    CDS      15316 -     15513    264  ## COG2879 Uncharacterized small protein
                               -    Prom     15576 -     15635    3.9 
                               -    Term     15534 -     15576    3.5 
    18    13 Op  2   4/0.636   -    CDS      15696 -     17801   2794  ## COG1966 Carbon starvation protein, predicted membrane protein
                               -    Prom     17857 -     17916    7.0 
                               -    Term     17880 -     17940    0.3 
    19    14 Op  1   5/0.091   -    CDS      17982 -     18395    304  ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism
    20    14 Op  2   5/0.091   -    CDS      18398 -     19144    185  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
    21    14 Op  3   5/0.091   -    CDS      19144 -     20001   1224  ## COG1535 Isochorismate hydrolase
    22    14 Op  4   6/0.000   -    CDS      20015 -     21625   1611  ## COG1021 Peptide arylation enzymes
    23    14 Op  5     .       -    CDS      21635 -     22810   1181  ## COG1169 Isochorismate synthase
                               -    Prom     22865 -     22924    6.3 
                               +    Prom     23106 -     23165    2.2 
    24    15 Tu  1     .       +    CDS      23185 -     24141   1082  ## COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component
    25    16 Tu  1     .       -    CDS      24145 -     25395   1229  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     25438 -     25497    3.9 
                               +    Prom     25382 -     25441    4.5 
    26    17 Op  1   8/0.000   +    CDS      25494 -     26510   1244  ## COG0609 ABC-type Fe3+-siderophore transport system, permease component
    27    17 Op  2   7/0.000   +    CDS      26507 -     27499    936  ## COG4779 ABC-type enterobactin transport system, permease component
    28    17 Op  3     .       +    CDS      27496 -     28311    197  ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16
    29    18 Tu  1     .       -    CDS      28308 -     29441    926  ## COG3765 Chain length determinant protein
                               -    Prom     29568 -     29627    7.0 
    30    19 Op  1   2/0.818   -    CDS      29657 -     33538   3632  ## COG1020 Non-ribosomal peptide synthetase modules and related proteins
    31    19 Op  2   2/0.818   -    CDS      33535 -     33753    228  ## COG3251 Uncharacterized protein conserved in bacteria
    32    19 Op  3     .       -    CDS      33756 -     34958    787  ## COG2382 Enterochelin esterase and related enzymes
                               -    Prom     35005 -     35064    4.8 
                               +    Prom     34966 -     35025    4.5 
    33    20 Tu  1     .       +    CDS      35201 -     37441   2652  ## COG4771 Outer membrane receptor for ferrienterochelin and colicins
                               +    Term     37554 -     37590    2.4 
                               +    Prom     37497 -     37556    9.7 
    34    21 Tu  1     .       +    CDS      37607 -     38236    418  ## COG2977 Phosphopantetheinyl transferase component of siderophore synthetase
Predicted protein(s)
>gi|223713560|gb|ACDM01000038.1| GENE     1         3  -       212     82     69 aa, chain + ## HITS:1  COG:ECs0653 KEGG:ns NR:ns ## COG: ECs0653 COG3697 # Protein_GI_number: 15829907 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Escherichia coli O157:H7 # 1      69     115     183     183     143  100.0  7e-35
HPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKTHQLTDLLNRMEALL
NDVDACNVN
>gi|223713560|gb|ACDM01000038.1| GENE     2       187  -      1065    610    292 aa, chain + ## HITS:1  COG:citG KEGG:ns NR:ns ## COG: citG COG1767 # Protein_GI_number: 16128596 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Escherichia coli K12 # 1     292       1     292     292     560  100.0  1e-160
MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDRINCGAHKDMALEDFHR
SALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDMFRATAGVNTHKGSIFSLG
LLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTNNSQLTAGQRLYQQLGLTGAR
GEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLLLMAINGDTNVASRGGEGGLRWL
QREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSPGGSADLLILTWFLAQI
>gi|223713560|gb|ACDM01000038.1| GENE     3      1116  -      2579   1676    487 aa, chain + ## HITS:1  COG:ECs0651 KEGG:ns NR:ns ## COG: ECs0651 COG0471 # Protein_GI_number: 15829905 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli O157:H7 # 1     487       1     487     487     867  100.0  0
MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISF
IAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVS
GLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKS
FPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCF
LPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGL
WVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGF
IDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVP
MEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGW
PILAMWN
>gi|223713560|gb|ACDM01000038.1| GENE     4      2675  -      3499    468    274 aa, chain + ## HITS:1  COG:rna KEGG:ns NR:ns ## COG: rna COG3719 # Protein_GI_number: 16128594 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease I # Organism: Escherichia coli K12 # 7     274       1     268     268     551  100.0  1e-157
MSSTPIMKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDR
NRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEA
RASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRL
NQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISI
KADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY
>gi|223713560|gb|ACDM01000038.1| GENE     5      3729  -      4139    432    136 aa, chain + ## HITS:1  COG:ECs0649 KEGG:ns NR:ns ## COG: ECs0649 COG0782 # Protein_GI_number: 15829903 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1     136       1     136     136     259  100.0  7e-70
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV
KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE
VLELEYQPEAAGDYLL
>gi|223713560|gb|ACDM01000038.1| GENE     6      4370  -      5608    851    412 aa, chain - ## HITS:1  COG:ybdR KEGG:ns NR:ns ## COG: ybdR COG1063 # Protein_GI_number: 16128591 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     412       1     412     412     832  100.0  0
MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGH
EFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQI
PAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAK
NAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDE
DSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRR
GGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTH
YMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI
>gi|223713560|gb|ACDM01000038.1| GENE     7      5727  -      5933    117     68 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_0629 NR:ns ## KEGG: EcE24377A_0629 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 13      68       1      56      56      89   96.0  3e-17
MNNSVILGEEFSVANSFVAQFHFKYINWHNDCLIHNPFSLLIMNKSFAMIIIFIPDICLV
LFPYELFL
>gi|223713560|gb|ACDM01000038.1| GENE     8      5829  -      6257    497    142 aa, chain + ## HITS:1  COG:ybdQ KEGG:ns NR:ns ## COG: ybdQ COG0589 # Protein_GI_number: 16128590 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1     142       1     142     142     253  100.0  8e-68
MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEE
HLQHEAQERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSIST
HLLGSNASSVIRHANLPVLVVR
>gi|223713560|gb|ACDM01000038.1| GENE     9      6378  -      7943    411    521 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 213     515       2     303     306 162  31 2e-39
MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNSLPV
RKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRHIDGDFE
FETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQNEITDRNVMGVPAVFVNGKE
FGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAIYSARKGIRTGL
MGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEG
GLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV
IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD
GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNV
KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKTA
>gi|223713560|gb|ACDM01000038.1| GENE    10      8188  -      8751    623    187 aa, chain - ## HITS:1  COG:ECs0644 KEGG:ns NR:ns ## COG: ECs0644 COG0450 # Protein_GI_number: 15829898 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1     187       1     187     187     381  100.0  1e-106
MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEE
LQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADR
ATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPS
LDLVGKI
>gi|223713560|gb|ACDM01000038.1| GENE    11      9123  -      9869    717    248 aa, chain + ## HITS:1  COG:dsbG KEGG:ns NR:ns ## COG: dsbG COG1651 # Protein_GI_number: 16128587 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Escherichia coli K12 # 12     248      32     268     268     474  100.0  1e-134
MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYL
TPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYV
FADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE
ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKT
LNIIMGNK
>gi|223713560|gb|ACDM01000038.1| GENE    12     10077  -     10979    469    300 aa, chain + ## HITS:1  COG:ybdO KEGG:ns NR:ns ## COG: ybdO COG0583 # Protein_GI_number: 16128586 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     300       1     300     300     563   99.0  1e-160
MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS
GKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL
RQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNR
HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNFYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
>gi|223713560|gb|ACDM01000038.1| GENE    13     11126  -     12346    693    406 aa, chain + ## HITS:1  COG:ybdN KEGG:ns NR:ns ## COG: ybdN COG3969 # Protein_GI_number: 16128585 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli K12 # 1     406       1     406     406     834   99.0  0
MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICV
LFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWV
RQPPQDAITDPDFFSFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIAS
LNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPL
RHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKP
EHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRR
ICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND
>gi|223713560|gb|ACDM01000038.1| GENE    14     12331  -     12948    542    205 aa, chain + ## HITS:1  COG:ybdM KEGG:ns NR:ns ## COG: ybdM COG1475 # Protein_GI_number: 16128584 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     205       5     209     209     408  100.0  1e-114
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN
PNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGY
LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV
LRLKQINGLQELFADRQYSRAWTVK
>gi|223713560|gb|ACDM01000038.1| GENE    15     12949  -     14109   1001    386 aa, chain - ## HITS:1  COG:ybdL KEGG:ns NR:ns ## COG: ybdL COG0436 # Protein_GI_number: 16128583 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1     386       1     386     386     770  100.0  0
MTNNPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA
NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVIC
FDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVW
QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM
TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD
ILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPF
PHKLIRLCFAKKESTLLAAAERLRQL
>gi|223713560|gb|ACDM01000038.1| GENE    16     14218  -     15306   1125    362 aa, chain + ## HITS:1  COG:ybdH KEGG:ns NR:ns ## COG: ybdH COG0371 # Protein_GI_number: 16128582 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1     362       1     362     362     698  100.0  0
MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLP
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYE
AVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG
AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESF
KA
>gi|223713560|gb|ACDM01000038.1| GENE    17     15316  -     15513    264     65 aa, chain - ## HITS:1  COG:ybdD KEGG:ns NR:ns ## COG: ybdD COG2879 # Protein_GI_number: 16132239 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli K12 # 1      65       1      65      65     129  100.0  1e-30
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG
GARCC
>gi|223713560|gb|ACDM01000038.1| GENE    18     15696  -     17801   2794    701 aa, chain - ## HITS:1  COG:cstA KEGG:ns NR:ns ## COG: cstA COG1966 # Protein_GI_number: 16128581 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Escherichia coli K12 # 1     701       1     701     701    1283  100.0  0
MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCIYLIAYRFYGLYIAKNV
LAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWL
LAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAM
IVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVA
ESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI
MRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQA
CFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGTADVVASAAQVVSSWG
FSITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEA
LFILTAVDAGTRAARFMLQDLLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDP
LGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQK
AFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLA
LFSIKTALAALKDPKPTAKETPYEPMPENVEEIVAQAKGAH
>gi|223713560|gb|ACDM01000038.1| GENE    19     17982  -     18395    304    137 aa, chain - ## HITS:1  COG:ybdB KEGG:ns NR:ns ## COG: ybdB COG2050 # Protein_GI_number: 16128580 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1     137       1     137     137     273   99.0  6e-74
MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGDASAA
LAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFD
EQGRRCCTCRLGTAVLG
>gi|223713560|gb|ACDM01000038.1| GENE    20     18398  -     19144    185    248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6     242       4     238     242 75  27 4e-13
MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVA
QVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR
QRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTD
MQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVV
DGGSTLGA
>gi|223713560|gb|ACDM01000038.1| GENE    21     19144  -     20001   1224    285 aa, chain - ## HITS:1  COG:entB_1 KEGG:ns NR:ns ## COG: entB_1 COG1535 # Protein_GI_number: 16128578 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate hydrolase # Organism: Escherichia coli K12 # 1     215       1     215     215     437  100.0  1e-123
MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI
AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV
LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD
FSRDEHLMSLKYVAGRSGRVVMTEELLPAPIPASKAALREVILPLLDESDEPFDDDNLID
YGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLSREVK
>gi|223713560|gb|ACDM01000038.1| GENE    22     20015  -     21625   1611    536 aa, chain - ## HITS:1  COG:entE KEGG:ns NR:ns ## COG: entE COG1021 # Protein_GI_number: 16128577 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Escherichia coli K12 # 1     536       1     536     536    1093  100.0  0
MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADN
LACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIE
PALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSP
ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSS
PGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLA
SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMC
PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID
PEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVV
KEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA
>gi|223713560|gb|ACDM01000038.1| GENE    23     21635  -     22810   1181    391 aa, chain - ## HITS:1  COG:ECs0632 KEGG:ns NR:ns ## COG: ECs0632 COG1169 # Protein_GI_number: 15829886 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Escherichia coli O157:H7 # 1     391       1     391     391     758  100.0  0
MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAVNGDSPDSPFQQKLAAL
FADAKAQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEKQASARRFTRSQSLNVVER
QAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDAAIDSGVLLERLIAQNPVSYN
FHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGNRLLASEKDRH
EHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWHLATPFEGKANSQENALTLACLLHP
TPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCAKLRENQVRLFA
GAGIVPASSPLGEWRETGVKLSTMLNVFGLH
>gi|223713560|gb|ACDM01000038.1| GENE    24     23185  -     24141   1082    318 aa, chain + ## HITS:1  COG:ECs0631 KEGG:ns NR:ns ## COG: ECs0631 COG4592 # Protein_GI_number: 15829885 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe2+-enterobactin transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     318       1     318     318     572   98.0  1e-163
MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLESQPQRIVSTSVTLTGSL
LAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPDLIL
ISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQL
AAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQG
KRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIYANPLLAHLPAVQNKQVYALGTETF
RLDYYSAMQVLDRLKALF
>gi|223713560|gb|ACDM01000038.1| GENE    25     24145  -     25395   1229    416 aa, chain - ## HITS:1  COG:ybdA KEGG:ns NR:ns ## COG: ybdA COG0477 # Protein_GI_number: 16128574 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     416       1     416     416     577  100.0  1e-164
MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTL
TGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWD
GFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYG
LAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFRFLLASPLVGGIALLGGLLTMAS
AVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLAHSARPGLLMLLSTLGSFL
AIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGD
AIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLVELRHFRQTPPQVTASDS
>gi|223713560|gb|ACDM01000038.1| GENE    26     25494  -     26510   1244    338 aa, chain + ## HITS:1  COG:fepD KEGG:ns NR:ns ## COG: fepD COG0609 # Protein_GI_number: 16128573 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 5     338       1     334     334     452  100.0  1e-127
MEVRMSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIV
LDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSS
AQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDV
YDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVAR
TQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFA
DIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
>gi|223713560|gb|ACDM01000038.1| GENE    27     26507  -     27499    936    330 aa, chain + ## HITS:1  COG:fepG KEGG:ns NR:ns ## COG: fepG COG4779 # Protein_GI_number: 16128572 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterobactin transport system, permease component # Organism: Escherichia coli K12 # 1     330       1     330     330     468  100.0  1e-132
MIYVSRRLLITCLLLVSACVVAGIWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRL
PRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIAL
SAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLW
NAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLMML
VAVVLTAAATALAGPISFIALVAPHIARRISGTARWGLTQAALCGALLLLAADLCAQQLF
MPYQLPVGVVTVSLGGIYLIVLLIQESRKK
>gi|223713560|gb|ACDM01000038.1| GENE    28     27496  -     28311    197    271 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 8     232       9     228     309 80  25 1e-14
MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA
HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED
EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI
DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERI
YGLRCMIIDDPVAGTPLVVPLGRTAPSTANS
>gi|223713560|gb|ACDM01000038.1| GENE    29     28308  -     29441    926    377 aa, chain - ## HITS:1  COG:fepE KEGG:ns NR:ns ## COG: fepE COG3765 # Protein_GI_number: 16128570 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli K12 # 1     377       1     377     377     721  100.0  0
MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI
LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY
LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT
SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL
NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN
RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR
YAMASRKQDAMMADHLV
>gi|223713560|gb|ACDM01000038.1| GENE    30     29657  -     33538   3632   1293 aa, chain - ## HITS:1  COG:entF_1 KEGG:ns NR:ns ## COG: entF_1 COG1020 # Protein_GI_number: 16128569 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Escherichia coli K12 # 1    1060       1    1060    1060    2004  100.0  0
MSQHLPLVAAQPGIWMAEKLSELPSAWSVAHYVELTGEVDSPLLARAVVAGLAQADTLRM
RFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQADLQQDLRVDSGKPLVFH
QLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTWLRGEPTPASPFTPFADVVEE
YQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGRSASADILRLKLEFTDGEFRQLA
TQLSGVQRTDLALALAALWLGRLCNRMDYAAGFIFMRRLGSAALTATGPVLNVLPLGIHI
AAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAAGDEPLFGPVLNIKVFDYQLDI
PDVQAQTHTLATGPVNDLELALFPDVHGDLSIEILANKQRYDEPTLIQHAERLKMLIAQF
AADPALLCGDVDIMLPGEYAQLAQLNATQVEIPETTLSALVAEQAAKTPDAPALADARYL
FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP
DDRLKMMLEDARPSLLITTDDQLPRFSDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYI
IFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIA
GAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVF
CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVW
NTGLRILDAMMHPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD
VARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGG
DARQLVGYLVSQSGLPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPL
PELKAQAPGRAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQV
ARQVTPGQVMVASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQ
FSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLG
GTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAA
QQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIA
ELDIYRQDCAHVDIISPGTFEKIGPIIRATLNR
>gi|223713560|gb|ACDM01000038.1| GENE    31     33535  -     33753    228     72 aa, chain - ## HITS:1  COG:Z0726 KEGG:ns NR:ns ## COG: Z0726 COG3251 # Protein_GI_number: 15800300 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1      72       1      72      72     115   93.0  2e-26
MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTL
TPTNFTQLQEAQ
>gi|223713560|gb|ACDM01000038.1| GENE    32     33756  -     34958    787    400 aa, chain - ## HITS:1  COG:fes KEGG:ns NR:ns ## COG: fes COG2382 # Protein_GI_number: 16128568 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Escherichia coli K12 # 27     400       1     374     374     727  100.0  0
MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHH
QNSQPQSMQRIAGTNVWQWTTQLNANWRGSYCFIPTERDDIFSVPSPDRLELREGWRKLL
PQAIADPLNLQSWKGGRGHAVSALEMPQAPLQPGWDCPQAPEIPAKEIIWKSERLKKSRR
VWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHR
AHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGC
VLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIMRANQALYAQLH
PIKESIFWRQVDGGHDALCWRGGLMQGLIDLWQPLFHDRS
>gi|223713560|gb|ACDM01000038.1| GENE    33     35201  -     37441   2652    746 aa, chain + ## HITS:1  COG:fepA KEGG:ns NR:ns ## COG: fepA COG4771 # Protein_GI_number: 16128567 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli K12 # 1     746       1     746     746    1444   99.0  0
MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQNLQAPGVSTITADEIRK
NPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVR
QGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWD
AYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYA
TTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTNSDSYTRSKYG
DETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFNEKATQDFV
DIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVST
TDRSPYSKAEIFSLFAENNMELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTL
KMGIARAYKAPSLYQTNPNYILYSKGQGCYASAGGCYLQGNDDLKAETSINKEIGLEFKR
DGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETV
MWTNNITYMLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNY
KGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGA
NYIAGAGAYTYNEPGRTWYMSVNTHF
>gi|223713560|gb|ACDM01000038.1| GENE    34     37607  -     38236    418    209 aa, chain + ## HITS:1  COG:entD KEGG:ns NR:ns ## COG: entD COG2977 # Protein_GI_number: 16128566 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phosphopantetheinyl transferase component of siderophore synthetase # Organism: Escherichia coli K12 # 1     209       1     209     209     428  100.0  1e-120
MVDMKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGRKRKTEHLAGRIAA
VYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGTTALAVVSRQPIGIDIEEIFSVQTA
RELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEIQTDAGFLDYQIISWNKQ
QVIIHRENEMFAVHWQIKEKIVITLCQHD
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:58:58 2011
 Seq name: gi|223713559|gb|ACDM01000039.1| Escherichia sp. 4_1_40B cont1.39, whole genome shotgun sequence 
 Length of sequence - 17821 bp
 Number of predicted genes - 15, with homology - 15
 Number of transcription units - 7, operones - 4 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         20 -       172    158  ## EcHS_A0629 Hok/Gef family protein
                               -    Prom       319 -       378    4.0 
                               +    Prom       468 -       527    2.5 
     2     2 Op  1     .       +    CDS        625 -      1743    922  ## COG2170 Uncharacterized conserved protein
     3     2 Op  2     .       +    CDS       1809 -      2057    344  ## S0495 hypothetical protein
                               +    Term      2066 -      2100   -1.0 
     4     2 Op  3   4/1.000   +    CDS       2122 -      2490    322  ## COG2315 Uncharacterized protein conserved in bacteria
                               +    Prom      2496 -      2555    3.5 
     5     2 Op  4   3/1.000   +    CDS       2584 -      3237    814  ## COG0778 Nitroreductase
                               +    Term      3247 -      3276    3.5 
                               +    Prom      3265 -      3324    4.2 
     6     3 Tu  1     .       +    CDS       3345 -      4592   1339  ## COG0668 Small-conductance mechanosensitive channel
                               +    Term      4602 -      4640    8.5 
                               -    Term      4586 -      4632   12.8 
     7     4 Tu  1     .       -    CDS       4673 -      6049   1802  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               -    Prom      6079 -      6138    3.5 
     8     5 Op  1  11/0.000   -    CDS       6151 -      9294   3401  ## COG3696 Putative silver efflux pump
     9     5 Op  2   3/1.000   -    CDS       9306 -     10529   1309  ## COG0845 Membrane-fusion protein
    10     5 Op  3   3/1.000   -    CDS      10545 -     10877    530  ## COG5569 Uncharacterized conserved protein
    11     5 Op  4     .       -    CDS      10904 -     12283    478  ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12
                               -    Prom     12363 -     12422    3.9 
                               +    Prom     12242 -     12301    2.7 
    12     6 Op  1  40/0.000   +    CDS      12440 -     13123    747  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
    13     6 Op  2     .       +    CDS      13113 -     14555    984  ## COG0642 Signal transduction histidine kinase
                               +    Prom     14580 -     14639    5.9 
    14     7 Op  1     .       +    CDS      14705 -     16942   1846  ## EcSMS35_0586 bacteriophage N4 adsorption protein B
    15     7 Op  2     .       +    CDS      16929 -     17820    747  ## COG0457 FOG: TPR repeat
Predicted protein(s)
>gi|223713559|gb|ACDM01000039.1| GENE     1        20  -       172    158     50 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A0629 NR:ns ## KEGG: EcHS_A0629 # Name: not_defined # Def: Hok/Gef family protein # Organism: E.coli_HS # Pathway: not_defined # 1      50      34      83      83      92  100.0  5e-18
MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK
>gi|223713559|gb|ACDM01000039.1| GENE     2       625  -      1743    922    372 aa, chain + ## HITS:1  COG:ybdK KEGG:ns NR:ns ## COG: ybdK COG2170 # Protein_GI_number: 16128564 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     372       1     372     372     789  100.0  0
MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLE
LATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTL
ENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFAS
SRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRV
MDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPH
TGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIG
LVKKHCEIWAGD
>gi|223713559|gb|ACDM01000039.1| GENE     3      1809  -      2057    344     82 aa, chain + ## HITS:1  COG:no KEGG:S0495 NR:ns ## KEGG: S0495 # Name: ybdJ # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      82       1      82      82     100   98.0  2e-20
MKHPLETLTTAAGILLMAFLSCLLLPAPALGLALAQKLVTMFHLMDLSQLYTLLFCLWFL
VLGAIEYFVLRFIWRRWFSLAD
>gi|223713559|gb|ACDM01000039.1| GENE     4      2122  -      2490    322    122 aa, chain + ## HITS:1  COG:ECs0617 KEGG:ns NR:ns ## COG: ECs0617 COG2315 # Protein_GI_number: 15829871 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     122       1     122     122     248  100.0  2e-66
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
PG
>gi|223713559|gb|ACDM01000039.1| GENE     5      2584  -      3237    814    217 aa, chain + ## HITS:1  COG:nfnB KEGG:ns NR:ns ## COG: nfnB COG0778 # Protein_GI_number: 16128561 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1     217       1     217     217     425  100.0  1e-119
MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARV
AKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKG
RKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKE
KGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
>gi|223713559|gb|ACDM01000039.1| GENE     6      3345  -      4592   1339    415 aa, chain + ## HITS:1  COG:ybdG KEGG:ns NR:ns ## COG: ybdG COG0668 # Protein_GI_number: 16128560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1     415       1     415     415     801  100.0  0
MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWL
QIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLD
VILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLM
LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQ
EINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLP
LEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
>gi|223713559|gb|ACDM01000039.1| GENE     7      4673  -      6049   1802    458 aa, chain - ## HITS:1  COG:pheP KEGG:ns NR:ns ## COG: pheP COG1113 # Protein_GI_number: 16128559 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1     458       1     458     458     839  100.0  0
MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY
GVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELT
AAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGL
WLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK
SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVI
LVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINY
LLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAF
LGMILLLMCTMDDMRLSAILLPVWIVFLFMAFKTLRRK
>gi|223713559|gb|ACDM01000039.1| GENE     8      6151  -      9294   3401   1047 aa, chain - ## HITS:1  COG:ybdE KEGG:ns NR:ns ## COG: ybdE COG3696 # Protein_GI_number: 16128558 # Func_class: P Inorganic ion transport and metabolism # Function: Putative silver efflux pump # Organism: Escherichia coli K12 # 1    1047       1    1047    1047    2029   99.0  0
MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI
VENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGK
LPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVASV
GGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTL
DDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREV
IAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV
RSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEE
WQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAF
TKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTL
LVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVP
EVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLAN
LWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEG
GRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSP
QALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDL
QKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLI
ISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAEPSLNN
PQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGM
ITAPLLSLFIIPAAYKLMWLHRHRVRK
>gi|223713559|gb|ACDM01000039.1| GENE     9      9306  -     10529   1309    407 aa, chain - ## HITS:1  COG:ECs0612 KEGG:ns NR:ns ## COG: ECs0612 COG0845 # Protein_GI_number: 15829866 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1     407       1     407     407     771   99.0  0
MKKIALIIGSMIAGGIISAAGFNWFAKAEPPAEKTSTAERKVLFWYDPMYPNTRFDKPGK
SPFMDMDLVPKYADEESSASGVRIDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQ
YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEG
ILERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG
MDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEV
DNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGNEQRVITVDADGRFVPKRVAVFQA
SQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRSESATHAH
>gi|223713559|gb|ACDM01000039.1| GENE    10     10545  -     10877    530    110 aa, chain - ## HITS:1  COG:ylcC KEGG:ns NR:ns ## COG: ylcC COG5569 # Protein_GI_number: 16128556 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     110       1     110     110     196   98.0  1e-50
MKKALQVAMFSLFTVIGFNAQANEHHHETMSEVQPQVISATGVVKGVDLESKKITIHHDP
IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
>gi|223713559|gb|ACDM01000039.1| GENE    11     10904  -     12283    478    459 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 12     459      11     457     460 188  28 2e-47
MSPCKLLPFCVALALTGCSLAPDYQRPAMPVPQQFSLSQNGLVNAADNYQNAGWRTFFVD
NQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGNLKGNTAT
TREFSTGLNASLDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQSYFNQQLAY
AQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKRQGELAQANN
ALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPDIMEAEHALMAANANIGAA
RAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDIAEIRQQ
QSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYL
EVLDAERSLFATRQTLLDLNYARQVNEISLYTALGGGWQ
>gi|223713559|gb|ACDM01000039.1| GENE    12     12440  -     13123    747    227 aa, chain + ## HITS:1  COG:ECs0609 KEGG:ns NR:ns ## COG: ECs0609 COG0745 # Protein_GI_number: 15829863 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     227       1     227     227     432  100.0  1e-121
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW
DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA
AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW
DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ
>gi|223713559|gb|ACDM01000039.1| GENE    13     13113  -     14555    984    480 aa, chain + ## HITS:1  COG:ybcZ KEGG:ns NR:ns ## COG: ybcZ COG0642 # Protein_GI_number: 16128553 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     480       1     480     480     932   99.0  0
MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIMIHSVKVHFAEQDINDLKEISATLER
VLNHPDETQARRLMTLEDIVSGYSNVLISLADSQGKTVYHSPGAPDIREFTRDAIPDKDA
RGGEVYLLSGPTIMMPGHGHGHMEHSNWRMINLPVGPLVDGKPIYTLYIALSIDFHLHYI
NDLMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSRQIQNITSKDLDVRLDPQTVPIE
LEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDV
LYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVEL
RFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPIA
PEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDARGTRFVITLPA
>gi|223713559|gb|ACDM01000039.1| GENE    14     14705  -     16942   1846    745 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_0586 NR:ns ## KEGG: EcSMS35_0586 # Name: nfrB # Def: bacteriophage N4 adsorption protein B # Organism: E.coli_SECEC # Pathway: not_defined # 1     745       1     745     745    1509   99.0  0
MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRRIKRKLSVYRRYPRMSY
RELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNAPDTQRDVDEV
CARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR
LFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSELHGKDVPVREALAGQVPSAGVGT
CFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKEKGMTEIFVRFPVVDEAKEREQRKF
LQHARTSNMICVREYFPDTFSTAVRQKSRWIIGIVFQGFKTHKWTSSLTLNYFLWRDRKG
AISNFVSFLAMLVMIQLLLLLAYESLWPDVWHFLSIFSGSAWLMTLLWLNFGLMVNRIVQ
RVIFVTGYYGLTQGLLSVLRLFWGNLINFMANWRALKQVLQHGDPRRVAWDKTTHDFPSV
TGDTRSLRPLGQILLENQVITEEQLDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQ
NGVAWESIDAWQIPSSLIAEMPASVALHYAVLPLRLENDELIVGSEDGIDPVSLAALTRK
VGRKVRYVIVLRGQIVTGLRHWYARRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQ
FLFAEILTTLGHINRSAINVLLLRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVS
MQSLLLKAGLNTEQVAQLESENEGE
>gi|223713559|gb|ACDM01000039.1| GENE    15     16929  -     17820    747    297 aa, chain + ## HITS:1  COG:nfrA KEGG:ns NR:ns ## COG: nfrA COG0457 # Protein_GI_number: 16128551 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 1     297       1     297     990     542  100.0  1e-154
MKENNLNRVIGWSGLLLTSLLSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKN
NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS
LAAIPVEVKSVTTVEELLAQQKACDAAPTLRCRSEVGQNALRLAQLPVARAQLNDATFAA
SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRILA
LQSQGIFTDPQSYITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:59:12 2011
 Seq name: gi|223713558|gb|ACDM01000040.1| Escherichia sp. 4_1_40B cont1.40, whole genome shotgun sequence 
 Length of sequence - 7400 bp
 Number of predicted genes - 6, with homology - 6
 Number of transcription units - 4, operones - 2 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       +    CDS          3 -      2081   1699  ## COG0457 FOG: TPR repeat
     2     1 Op  2     .       +    CDS       2082 -      2972    575  ## JW0556 hypothetical protein
                               +    Term      2983 -      3023    8.1 
     3     2 Tu  1     .       +    CDS       3155 -      3916    457  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term      4083 -      4126    3.1 
                               -    Term      4141 -      4179    0.2 
     4     3 Tu  1     .       -    CDS       4212 -      4535    138  ## gi|300897442|ref|ZP_07115865.1| conserved hypothetical protein
                               +    Prom      4216 -      4275    3.9 
     5     4 Op  1   2/0.000   +    CDS       4429 -      5382    604  ## COG4571 Outer membrane protease
                               +    Term      5402 -      5442    4.5 
                               +    Prom      5518 -      5577    5.1 
     6     4 Op  2     .       +    CDS       5659 -      7053    291  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
                               +    Term      7074 -      7121   10.2 
Predicted protein(s)
>gi|223713558|gb|ACDM01000040.1| GENE     1         3  -      2081   1699    692 aa, chain + ## HITS:1  COG:nfrA KEGG:ns NR:ns ## COG: nfrA COG0457 # Protein_GI_number: 16128551 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 1     692     299     990     990    1323  100.0  0
NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT
RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNEQSREAADLLLQRYPFQGDARVSQTL
MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY
DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPSAWQHRAVAYQAYQVEDYATALAAWQKI
SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEKRGLGSNALYWWLHAQRYIPGQPELA
LNDLTRSINIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNTQAALGYALWD
SGDIAQSREMLEPAHKGLPDDPALIRQLAYVNQRLDDMPATQHYARLVIDDIDNQALITP
LTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGAAPGKSYRSYGQL
EAEYRIGRNMLLEGDLLSVYSRVFADTGENGVMMPVKNPMSGTGLRWKPLRDQIFFIAVE
QQLPLNGQNGASDTMLRASASFFNGGKYSDEWHPNGSGWFAQNLYLDAAQYIRQDIQAWT
ADYRVSWHQKVANGQTIEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYDAWPHK
VSLGVEYQHTFKAINQRNGERNNAFLTIGVHW
>gi|223713558|gb|ACDM01000040.1| GENE     2      2082  -      2972    575    296 aa, chain + ## HITS:1  COG:no KEGG:JW0556 NR:ns ## KEGG: JW0556 # Name: ybcH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     296       1     296     296     580  100.0  1e-164
MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWT
RYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAA
DLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYI
SSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPAS
GVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY
>gi|223713558|gb|ACDM01000040.1| GENE     3      3155  -      3916    457    253 aa, chain + ## HITS:1  COG:envY KEGG:ns NR:ns ## COG: envY COG2207 # Protein_GI_number: 16128549 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     253       1     253     253     454  100.0  1e-128
MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR
NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA
LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK
KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP
LNYLAKQRQKVMW
>gi|223713558|gb|ACDM01000040.1| GENE     4      4212  -      4535    138    107 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|300897442|ref|ZP_07115865.1| ## NR: gi|300897442|ref|ZP_07115865.1| conserved hypothetical protein [Escherichia coli MS 198-1] # 1     101       1     101     119     146   95.0  5e-34
MSAFMLSGVNDIVSVEAKELIAIGVVRTIPRSFARIKVLHSIVLMIEYVFFISNLMSQLH
IAPLFIFCLVLNDYHNALSVFGLIICYCFMLRFYCVVFYAFVVFLSI
>gi|223713558|gb|ACDM01000040.1| GENE     5      4429  -      5382    604    317 aa, chain + ## HITS:1  COG:ECs1663 KEGG:ns NR:ns ## COG: ECs1663 COG4571 # Protein_GI_number: 15830917 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protease # Organism: Escherichia coli O157:H7 # 1     317       1     317     317     597   98.0  1e-170
MRAKLLGIVLTTPIAISSFASTETISFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS
QLDWKFNNTAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR
HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI
GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVEASDNDEHYDPGKRIT
YRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNDNTSDYSKNGA
GIENYNFITTAGLKYTF
>gi|223713558|gb|ACDM01000040.1| GENE     6      5659  -      7053    291    464 aa, chain + ## HITS:1  COG:ECs1662 KEGG:ns NR:ns ## COG: ECs1662 COG0596 # Protein_GI_number: 15830916 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli O157:H7 # 1     464      31     494     494     951   99.0  0
MASQFNHWFGEEKPSPDLLCGYLSVPLKYTDTGGDASYEKKSQVKLALTKLPAKSKHKGS
ILIISGGPGLPGINPYINFDWPVTNLRESWDIIGFDPRGVGQSTPTINCRQSDTETQENI
TEKQQVLNKINACIHNTGAEVIRHIGSNEAVYDIDRIRQALGDKQLTAVAYSYGTQIAAL
YAERFPYNVRSIVLDGVVDIDDLEDNFTWQLKQAQSYQETFDRFASWCARTKSCPLSSDR
DKAITQFHELLSKLHHKPLLDSKGENISSDELISLTTDLLLWRSSWPTLATAIRQFSQGI
VSNEIETALSAQIASEESSDASGVILCVDQGDEQLTPEERKSRKDALANAFPAINFDNGR
SDSPDFCELWPIHSDLNKTRLKNTVLPSGLLFVAHKYDPTTPWINARKMAEKFSSPLLTI
NGDGHTLALTGVNLCVDKAVVHHLITPQKIENIYCPGNSEAEIQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 18:59:26 2011
 Seq name: gi|223713557|gb|ACDM01000041.1| Escherichia sp. 4_1_40B cont1.41, whole genome shotgun sequence 
 Length of sequence - 13554 bp
 Number of predicted genes - 20, with homology - 20
 Number of transcription units - 8, operones - 5 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS         41 -       334    286  ## c3147 hypothetical protein
     2     1 Op  2     .       -    CDS        345 -      1049     85  ## ECIAI39_0534 hypothetical protein
     3     1 Op  3     .       -    CDS       1059 -      1340    318  ## UTI89_C5137 hypothetical protein
     4     1 Op  4     .       -    CDS       1337 -      3286    461  ## UTI89_C5135 hypothetical protein
     5     1 Op  5   6/0.000   -    CDS       3286 -      3615    202  ## COG4718 Phage-related protein
     6     1 Op  6     .       -    CDS       3612 -      3806    133  ## COG5281 Phage-related minor tail protein
                               -    Prom      3975 -      4034    5.9 
                               +    Prom      4484 -      4543    3.0 
     7     2 Tu  1     .       +    CDS       4569 -      4979    132  ## COG5562 Phage envelope protein
                               +    Term      5038 -      5074    1.7 
                               -    Term      5215 -      5265    4.8 
     8     3 Op  1     .       -    CDS       5266 -      5448    155  ## ECED1_1711 conserved hypothetical protein from phage origin
     9     3 Op  2     .       -    CDS       5520 -      6017    378  ## ECED1_1712 conserved hypothetical protein from phage origin, putative KilA, N-terminal domain
                               -    Prom      6181 -      6240    5.5 
                               -    Term      6156 -      6188    3.8 
    10     4 Tu  1     .       -    CDS       6272 -      6457    138  ## ECO26_0865 putative lipoprotein Rz1 precursor
    11     5 Op  1     .       -    CDS       6653 -      7150    249  ## COG3772 Phage-related lysozyme (muraminidase)
    12     5 Op  2     .       -    CDS       7150 -      7365    201  ## APECO1_513 phage lysis protein
                               -    Prom      7398 -      7457    2.6 
                               +    Prom      7722 -      7781    5.3 
    13     6 Tu  1     .       +    CDS       7955 -      9037   1056  ## COG3203 Outer membrane protein (porin)
                               +    Term      9176 -      9206    3.0 
                               -    Term      9042 -      9087   11.1 
    14     7 Op  1     .       -    CDS       9226 -      9609    315  ## ECS88_1182 putative antitermination protein Q homolog; DLP12 prophage
    15     7 Op  2     .       -    CDS       9627 -     10544    490  ## G2583_5194 hypothetical protein
    16     7 Op  3     .       -    CDS      10624 -     11439    541  ## G2583_5193 KilA-N domain family
                               -    Prom     11496 -     11555    3.7 
    17     8 Op  1     .       -    CDS      11602 -     11997    258  ## COG4570 Holliday junction resolvase
    18     8 Op  2     .       -    CDS      11994 -     12320    217  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
    19     8 Op  3     .       -    CDS      12317 -     12970    596  ## ECS88_0548 putative phage AdoMet-dependent methyltransferase
    20     8 Op  4     .       -    CDS      12970 -     13458    149  ## ECS88_2902 conserved hypothetical protein; CPS-53 (KpLE1) prophage
Predicted protein(s)
>gi|223713557|gb|ACDM01000041.1| GENE     1        41  -       334    286     97 aa, chain - ## HITS:1  COG:no KEGG:c3147 NR:ns ## KEGG: c3147 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1      97       1      97      97     179   93.0  3e-44
MDITPFLHALCAVAAQVMIGLFAGNWVYGAIAGCTFFIAREHTQAEYRWIEMFGHGKRIN
MPWWGGFDPRVWDVASLIDFAVPVVACLLVWLLVNRG
>gi|223713557|gb|ACDM01000041.1| GENE     2       345  -      1049     85    234 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_0534 NR:ns ## KEGG: ECIAI39_0534 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1     234       1     234     234     450   97.0  1e-125
MATSTVIPGDITTLKGDVSKAKEDISSINGKVSTLQTDMASAQQDISTRYTKTEVDNKLK
NKLEVNALESGNYGGDFYPLTGREAFYLWNLGTTTAAANLYLNPDPAISSVLRSTSSIRY
KHSVETIDSEHADLIFRMRPVWYRSQCENDRRDWGFYGLIAEEVGEIAPQFVHWRPANEN
DAPEAISSNGLVAEGVMYERLVVPLIHHIQKLTERVDELESELKLLSTSQSDIG
>gi|223713557|gb|ACDM01000041.1| GENE     3      1059  -      1340    318     93 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C5137 NR:ns ## KEGG: UTI89_C5137 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      93       1      93      93     166   94.0  2e-40
MKDLTLKFADRADFSAFMGSIGYYNDESMQDDILIDVIGNVYKETGELTEDGEPVCVKED
GYFVNVRIINDVKTPSIFDEYVVAVEHQLRGWM
>gi|223713557|gb|ACDM01000041.1| GENE     4      1337  -      3286    461    649 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C5135 NR:ns ## KEGG: UTI89_C5135 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 24     648     171     791     791     769   84.0  0
MQDNSAQAAAASQTASANSATAAKKSETNAKNSETAAKTSETNAKSSQTAAKTSETNAKA
SETAAKNSQVAAAQSESAAAGSATSAAGSATAAANSQKAAKTSETNAKSSQTAAKTSETN
AKASETAAKSSQDAAAQSESAAAGSASAAAASATASANSQKAAKTSETNAKTSETAAANS
AKASAASQTAAKASEDAAREYASQAAEPYEYVLQPLPDVWIPFNDSLDMITGFSPSYKKI
VIGDDEITMPGDKIVKFKRASKATYINKSGVLTEAAIDEPRFERDGLLIEGQRTNYMLNS
ESPASWGRSSNMDVPETGTDSFGFTYGKFVCNDSLIGQTSAINMASIAATKSVDVSGDNK
YVTTSCRFKTELQVRLRIRFDKYDGSATTFLGDAYIDTQTLETNMTGGAASRITARVRKD
EATGWIFAEATIQAIDGELKIGSQIQYSPKQGGATVSGDYIYLATPQVENGPCVSSFIIS
GTTAATRASDMVTIPARNNIYKQPISVLIEVNKNWDIVPNGAPRIFDLNATSSFAEESFI
FAFRGPTSTVLPGSAYVSVGSPSRGTGNNEVVNTGIYGVKIDKDGGLAASLNGNISSKVS
TSWGGAIKSTAIRIGGQTTAGTRHLFGHIRNFRIWHKELTDAQMGESIK
>gi|223713557|gb|ACDM01000041.1| GENE     5      3286  -      3615    202    109 aa, chain - ## HITS:1  COG:ECs1644 KEGG:ns NR:ns ## COG: ECs1644 COG4718 # Protein_GI_number: 15830898 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Escherichia coli O157:H7 # 1     109       1     109     109     192   93.0  1e-49
MKTFRWKVKPGMDVASVPSVRKVRFGDGHSQRAPAGLNANLKTYSVTLSVPREEATVLES
FLEEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSAEFEQVVN
>gi|223713557|gb|ACDM01000041.1| GENE     6      3612  -      3806    133     64 aa, chain - ## HITS:1  COG:ECs1643 KEGG:ns NR:ns ## COG: ECs1643 COG5281 # Protein_GI_number: 15830897 # Func_class: S Function unknown # Function: Phage-related minor tail protein # Organism: Escherichia coli O157:H7 # 1      64     786     849     849     102   85.0  2e-22
MADSRSQASGKFEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARDEIQTQMRDGGLFS
GGGR
>gi|223713557|gb|ACDM01000041.1| GENE     7      4569  -      4979    132    136 aa, chain + ## HITS:1  COG:ybcV KEGG:ns NR:ns ## COG: ybcV COG5562 # Protein_GI_number: 16128541 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1     135      15     149     150     193   77.0  8e-50
MAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVLIKGQG
KVVNVRFSKNKCLIEATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYYTFDNS
LLFTENIQNTTQIFPH
>gi|223713557|gb|ACDM01000041.1| GENE     8      5266  -      5448    155     60 aa, chain - ## HITS:1  COG:no KEGG:ECED1_1711 NR:ns ## KEGG: ECED1_1711 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_ED1a # Pathway: not_defined # 1      60      26      85      85      87   93.0  1e-16
MMEALASVDEFGEQLRLNGCVNHHFVSYMMRNSIMQAFMDMAKAERKEERRRKRAEAKAK
>gi|223713557|gb|ACDM01000041.1| GENE     9      5520  -      6017    378    165 aa, chain - ## HITS:1  COG:no KEGG:ECED1_1712 NR:ns ## KEGG: ECED1_1712 # Name: not_defined # Def: conserved hypothetical protein from phage origin, putative KilA, N-terminal domain # Organism: E.coli_ED1a # Pathway: not_defined # 1     165      24     188     188     340   97.0  1e-92
MKSLTLFNQPIRIGEDGMICLTDMWKASGKSESESPYHYLRNKQTKEFLAELEKNHESVV
FTERGVHGGTYGGKFVAYDYAAWLNPGFKYAAYKVLDDYFTGELQHRNSLSAQLNMKCHE
FDQKKDMASFCGQGLAAWRYTKPVLVAEINSLANQLQITIPGLPG
>gi|223713557|gb|ACDM01000041.1| GENE    10      6272  -      6457    138     61 aa, chain - ## HITS:1  COG:no KEGG:ECO26_0865 NR:ns ## KEGG: ECO26_0865 # Name: not_defined # Def: putative lipoprotein Rz1 precursor # Organism: E.coli_O26_H11 # Pathway: not_defined # 1      61       1      61      61      92   96.0  5e-18
MLTRLSKVSVLMFLLGVSACKSPPPVQSQRPEPAAWAMEKAQDLQQMLNSIITVSEVEST
R
>gi|223713557|gb|ACDM01000041.1| GENE    11      6653  -      7150    249    165 aa, chain - ## HITS:1  COG:ybcS KEGG:ns NR:ns ## COG: ybcS COG3772 # Protein_GI_number: 16128538 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Escherichia coli K12 # 1     165       1     165     165     297   95.0  7e-81
MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVRHNPYKDIVGVWTVCYGHTGKDI
IPGKTYTEAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLL
RKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
>gi|223713557|gb|ACDM01000041.1| GENE    12      7150  -      7365    201     71 aa, chain - ## HITS:1  COG:no KEGG:APECO1_513 NR:ns ## KEGG: APECO1_513 # Name: not_defined # Def: phage lysis protein # Organism: E.coli_APEC # Pathway: not_defined # 1      70      30      99     100     130  100.0  1e-29
MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKI
KEDKRKAARGG
>gi|223713557|gb|ACDM01000041.1| GENE    13      7955  -      9037   1056    360 aa, chain + ## HITS:1  COG:nmpC KEGG:ns NR:ns ## COG: nmpC COG3203 # Protein_GI_number: 16128536 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     342      21     367     375     549   91.0  1e-156
MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYAR
LGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYG
VAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKND
RTDVTEANGDGFGFSTTYEYEGFGVGATYAKSDRTDGQVAYGKSKFNASGKNAEVWAAGL
KYDANNIYLATTYSETQNMTVFGNNHIANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDL
GVHGDRDLVKYVDVGATYYFNKNMSTFVDYKINLIDDSKFTKTAGIDTDDIVAVGLVYQF
>gi|223713557|gb|ACDM01000041.1| GENE    14      9226  -      9609    315    127 aa, chain - ## HITS:1  COG:no KEGG:ECS88_1182 NR:ns ## KEGG: ECS88_1182 # Name: ybcQ # Def: putative antitermination protein Q homolog; DLP12 prophage # Organism: E.coli_S88 # Pathway: not_defined # 1     127       1     127     127     251  100.0  5e-66
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARL
KKNNSDLHDLLVDYYVCGMTFMSLASKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLDMD
IVANNSN
>gi|223713557|gb|ACDM01000041.1| GENE    15      9627  -     10544    490    305 aa, chain - ## HITS:1  COG:no KEGG:G2583_5194 NR:ns ## KEGG: G2583_5194 # Name: ydfU # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     305       1     305     305     622  100.0  1e-177
MPLFMQGRVLLEPEPERYSSFASGAVPAASQPLADDPAVRAVFRNEAVIRRAGGVECLES
WLLREKGCQWPHSDWHSENMTTMRHAPGAIRLCWHCDNQLRDQFTERLESMATDNCARWV
LSVVRRDLGFDDSHVVTMPELCWWLIRNDLADALPESAARKALRLPKPVVPSVTRESDLV
PSVPATSIIQDKAKKVLALKVDPESPESFMLRPKRHRWVNEKYTRWVKTQPCACCGKPAD
DPHHLIGHGQGGMGTKAHDLFVLPLCRKHHDELHADTVAFEEKYGSQLELIFRFIDRALA
IGVLA
>gi|223713557|gb|ACDM01000041.1| GENE    16     10624  -     11439    541    271 aa, chain - ## HITS:1  COG:no KEGG:G2583_5193 NR:ns ## KEGG: G2583_5193 # Name: kilA # Def: KilA-N domain family # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     271       1     271     271     535  100.0  1e-151
MNQLLVIDGVSVRQYFESNYCLNDLQKAALLAAGENRSSRSLEVHEFMRRPETKALVELL
EEETTGDSRSIPVITIQGRNGGTYVCKELVYAYAMWISPAFSLKVIRTFDALHNSSPEET
TSDKIKSGVILLESAAKTLNLSNSSKLGAYQKLSKVAGLPELMPIYAIDAPADAPDGSSR
PTLSLSALLKQYGIRLTANQAYHQMAKLGIVEQRERYSRTAINNIKKFWSLTAKGCMFGK
NITSPANPRETQPHFFESRFPELLKLLDTVH
>gi|223713557|gb|ACDM01000041.1| GENE    17     11602  -     11997    258    131 aa, chain - ## HITS:1  COG:ECs2751 KEGG:ns NR:ns ## COG: ECs2751 COG4570 # Protein_GI_number: 15832005 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1     124       3     119     119      87   41.0  8e-18
MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAIVEQLRRLPKPTSAPAS
VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK
YEKASCKLATR
>gi|223713557|gb|ACDM01000041.1| GENE    18     11994  -     12320    217    108 aa, chain - ## HITS:1  COG:HI0749 KEGG:ns NR:ns ## COG: HI0749 COG1974 # Protein_GI_number: 16272690 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Haemophilus influenzae # 1      90       3      92     209      70   41.0  7e-13
MTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGVITIKR
GVARGITLHTVVKDDDSEAVGIIRSLLAGEENARLRAAHWLHERGLKV
>gi|223713557|gb|ACDM01000041.1| GENE    19     12317  -     12970    596    217 aa, chain - ## HITS:1  COG:no KEGG:ECS88_0548 NR:ns ## KEGG: ECS88_0548 # Name: not_defined # Def: putative phage AdoMet-dependent methyltransferase # Organism: E.coli_S88 # Pathway: not_defined # 1     217      12     228     228     446   99.0  1e-124
MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNTKCAAY
YTAEDNALAHDWSERLAELKGAAFGNPPYSRASQHEGQYITGMRYIMKHASAMRDKGGRY
VFLIKAATSEVWWPEDADHIAFIRGRIGFELPAWFIPKDEKQVPTGAFFAGAIAVFDKTW
KGPAISYIGRDELEACGEAFLAQVRQQAEKLVREMAA
>gi|223713557|gb|ACDM01000041.1| GENE    20     12970  -     13458    149    162 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2902 NR:ns ## KEGG: ECS88_2902 # Name: yfdN # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.coli_S88 # Pathway: not_defined # 1     162       3     164     164     289   98.0  3e-77
MSLLNEVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFP
RLTERAQEPEPQPVRETRPARNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAF
RESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:00:19 2011
 Seq name: gi|223713556|gb|ACDM01000042.1| Escherichia sp. 4_1_40B cont1.42, whole genome shotgun sequence 
 Length of sequence - 39518 bp
 Number of predicted genes - 37, with homology - 37
 Number of transcription units - 19, operones - 11 average op.length -  2.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        91 -       150    1.8 
     1     1 Tu  1   1/1.000   +    CDS        185 -      1348    262  ## COG0582 Integrase
                               -   TRNA       1364 -      1440   89.4  # Arg TCT 0 0
                               +    Prom      1416 -      1475    1.7 
     2     2 Tu  1     .       +    CDS       1683 -      2315    292  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
                               +    Term      2475 -      2517    0.6 
                               -    Term      2102 -      2144   -0.3 
     3     3 Op  1   4/0.750   -    CDS       2318 -      2833    164  ## COG3539 P pilus assembly protein, pilin FimA
     4     3 Op  2   6/0.125   -    CDS       2844 -      3851    714  ## COG3539 P pilus assembly protein, pilin FimA
     5     3 Op  3  10/0.000   -    CDS       3864 -      6473   1614  ## COG3188 P pilus assembly protein, porin PapC
     6     3 Op  4   7/0.125   -    CDS       6504 -      7172    209  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom      7230 -      7289    6.0 
                               -    Term      7233 -      7281    0.1 
     7     4 Tu  1     .       -    CDS       7416 -      7958    213  ## COG3539 P pilus assembly protein, pilin FimA
                               -    Prom      8078 -      8137    7.1 
                               +    Prom      8142 -      8201    5.5 
     8     5 Op  1   2/0.875   +    CDS       8438 -      9304    888  ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
     9     5 Op  2   1/1.000   +    CDS       9306 -      9518    308  ## COG2501 Uncharacterized conserved protein
                               +    Term      9527 -      9560    6.1 
    10     6 Tu  1     .       +    CDS       9626 -     10147    340  ## COG1988 Predicted membrane-bound metal-dependent hydrolases
                               -    Term     10136 -     10171    7.4 
    11     7 Tu  1     .       -    CDS      10183 -     11568   1795  ## COG0215 Cysteinyl-tRNA synthetase
                               -    Prom     11603 -     11662    3.6 
                               +    Prom     11562 -     11621    4.3 
    12     8 Op  1   8/0.125   +    CDS      11742 -     12236    570  ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
    13     8 Op  2   5/0.125   +    CDS      12239 -     12961    605  ## COG2908 Uncharacterized protein conserved in bacteria
                               +    Prom     12977 -     13036    3.4 
    14     9 Op  1  29/0.000   +    CDS      13079 -     13588    538  ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
    15     9 Op  2     .       +    CDS      13585 -     14652   1326  ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
    16    10 Op  1     .       -    CDS      14847 -     15740   1035  ## COG0549 Carbamate kinase
    17    10 Op  2     .       -    CDS      15737 -     16552    500  ## EcolC_3102 putative carboxylase
    18    10 Op  3     .       -    CDS      16563 -     17822   1220  ## EC55989_0533 hypothetical protein
    19    10 Op  4     .       -    CDS      17832 -     19499   1731  ## COG0074 Succinyl-CoA synthetase, alpha subunit
                               -    Prom     19677 -     19736    4.2 
                               +    Prom     19604 -     19663    4.4 
    20    11 Op  1   4/0.750   +    CDS      19816 -     20865    910  ## COG2055 Malate/L-lactate dehydrogenases
    21    11 Op  2   4/0.750   +    CDS      20887 -     22122   1110  ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
    22    11 Op  3     .       +    CDS      22133 -     22918    969  ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization
                               +    Term     22961 -     22992    4.1 
    23    12 Op  1   2/0.875   -    CDS      23146 -     24291   1079  ## COG1929 Glycerate kinase
    24    12 Op  2   2/0.875   -    CDS      24313 -     25614   1047  ## COG2233 Xanthine/uracil permeases
                               -    Term     25624 -     25656    3.0 
    25    13 Op  1   2/0.875   -    CDS      25671 -     27032   1564  ## COG0044 Dihydroorotase and related cyclic amidohydrolases
    26    13 Op  2     .       -    CDS      27092 -     28546   1431  ## COG1953 Cytosine/uracil/thiamine/allantoin permeases
                               -    Prom     28601 -     28660    8.1 
    27    14 Op  1   8/0.125   -    CDS      28715 -     29593   1063  ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
    28    14 Op  2   8/0.125   -    CDS      29693 -     30469    846  ## COG3622 Hydroxypyruvate isomerase
    29    14 Op  3   4/0.750   -    CDS      30482 -     32263   2197  ## COG3960 Glyoxylate carboligase
                               -    Prom     32284 -     32343    4.4 
                               -    Term     32310 -     32340    3.0 
    30    15 Tu  1   4/0.750   -    CDS      32353 -     33123    658  ## COG1414 Transcriptional regulator
                               -    Prom     33166 -     33225    3.1 
    31    16 Tu  1     .       -    CDS      33246 -     33728    505  ## COG3194 Ureidoglycolate hydrolase
                               -    Prom     33790 -     33849    5.0 
                               +    Prom     33835 -     33894    5.6 
    32    17 Op  1   4/0.750   +    CDS      33958 -     34884    614  ## COG0583 Transcriptional regulator
                               +    Term     34895 -     34944    2.7 
    33    17 Op  2     .       +    CDS      34953 -     36047   1150  ## COG2603 Predicted ATPase
                               +    Prom     36070 -     36129    3.0 
    34    18 Tu  1     .       +    CDS      36163 -     36534    316  ## SDY_0400 hypothetical protein
                               +    Term     36641 -     36682    5.1 
                               -    Term     37449 -     37517   -0.1 
    35    19 Op  1     .       -    CDS      37520 -     38230    138  ## COG3209 Rhs family protein
    36    19 Op  2     .       -    CDS      38230 -     38574    147  ## B21_00454 hypothetical protein
    37    19 Op  3     .       -    CDS      38638 -     39510    227  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713556|gb|ACDM01000042.1| GENE     1       185  -      1348    262    387 aa, chain + ## HITS:1  COG:intD KEGG:ns NR:ns ## COG: intD COG0582 # Protein_GI_number: 16128520 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 1     387       1     387     387     709   99.0  0
MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE
EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK
QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN
KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE
SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL
SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH
ARKIDDIFGDNVPNMSHCGIMEDIKKA
>gi|223713556|gb|ACDM01000042.1| GENE     2      1683  -      2315    292    210 aa, chain + ## HITS:1  COG:ZfimZ KEGG:ns NR:ns ## COG: ZfimZ COG2197 # Protein_GI_number: 15800272 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 EDL933 # 1     210      22     231     231     393   99.0  1e-109
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLP
GTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI
LSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKT
VSAHKSNIYGKLGLHSIVELIDYAKLYELI
>gi|223713556|gb|ACDM01000042.1| GENE     3      2318  -      2833    164    171 aa, chain - ## HITS:1  COG:sfmF KEGG:ns NR:ns ## COG: sfmF COG3539 # Protein_GI_number: 16128518 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     171       1     171     171     331  100.0  4e-91
MRRVLFSCFCGLLWSSSGWAVDPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQ
LLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTVAIELRNSDR
SRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN
>gi|223713556|gb|ACDM01000042.1| GENE     4      2844  -      3851    714    335 aa, chain - ## HITS:1  COG:ECs0595 KEGG:ns NR:ns ## COG: ECs0595 COG3539 # Protein_GI_number: 15829849 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 11     335       1     325     325     645   99.0  0
MKIICRLLLAMACLCLANISWATVCANSTGVAEDEHYDLSNIFNSTNNQPGQIVVLPEKS
GWVGVSAICPPGTLVNYTYRSYVTNFIVQETIDNYKYMQLNDYLLGAMSLVDSVMDIQFP
PQNYIRMGTDPNVSQNLPFGVMDSRLIFRLKVIRPFINMVEIPRQVMFTVYVTSTPYDPL
VTPVYTISFGGRVEVPQNCELNAGQIVEFDFGDIGASLFSAAGPGNRPAGVMPQTKSIAV
KCTNVAAQAYLTMRLEASAVSGQAMVSDNQDLGFIVADQNDTPITPNDLNSVIPFRLDAA
AAANVTLRAWPISITGQKPTEGPFSALGYLRVDYQ
>gi|223713556|gb|ACDM01000042.1| GENE     5      3864  -      6473   1614    869 aa, chain - ## HITS:1  COG:ECs0594 KEGG:ns NR:ns ## COG: ECs0594 COG3188 # Protein_GI_number: 15829848 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 1     869       1     869     869    1727   99.0  0
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
RFKFDLTAGDFRSGNSQQSSPFFFQGTVLGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
NWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK
YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW
QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
RCIAHYVLPKQSLQQAVTVISAVCTHPGS
>gi|223713556|gb|ACDM01000042.1| GENE     6      6504  -      7172    209    222 aa, chain - ## HITS:1  COG:sfmC KEGG:ns NR:ns ## COG: sfmC COG3121 # Protein_GI_number: 16128515 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     222       9     230     230     424  100.0  1e-119
MLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGV
KEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVL
QLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLG
NAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>gi|223713556|gb|ACDM01000042.1| GENE     7      7416  -      7958    213    180 aa, chain - ## HITS:1  COG:ECs0592 KEGG:ns NR:ns ## COG: ECs0592 COG3539 # Protein_GI_number: 15829846 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1     180      12     191     191     264  100.0  8e-71
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTD
IFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVG
IEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>gi|223713556|gb|ACDM01000042.1| GENE     8      8438  -      9304    888    288 aa, chain + ## HITS:1  COG:ECs0591 KEGG:ns NR:ns ## COG: ECs0591 COG0190 # Protein_GI_number: 15829845 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Escherichia coli O157:H7 # 1     288       1     288     288     569  100.0  1e-162
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEE
VGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDV
DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL
LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKV
VGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQGE
>gi|223713556|gb|ACDM01000042.1| GENE     9      9306  -      9518    308     70 aa, chain + ## HITS:1  COG:ybcJ KEGG:ns NR:ns ## COG: ybcJ COG2501 # Protein_GI_number: 16128512 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1      70       8      77      77     127  100.0  7e-30
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS
FAGHSVQVVA
>gi|223713556|gb|ACDM01000042.1| GENE    10      9626  -     10147    340    173 aa, chain + ## HITS:1  COG:ybcI KEGG:ns NR:ns ## COG: ybcI COG1988 # Protein_GI_number: 16128511 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     173       1     173     173     285   97.0  3e-77
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGIAYGNVFGHRGF
THSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWS
DERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGILLMGMLWWHRR
>gi|223713556|gb|ACDM01000042.1| GENE    11     10183  -     11568   1795    461 aa, chain - ## HITS:1  COG:ECs0588 KEGG:ns NR:ns ## COG: ECs0588 COG0215 # Protein_GI_number: 15829842 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1     461       1     461     461     918   99.0  0
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK
LKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAE
IIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMD
FVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIA
QSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRS
QLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLF
DMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADGSEVAEIEALI
QQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>gi|223713556|gb|ACDM01000042.1| GENE    12     11742  -     12236    570    164 aa, chain + ## HITS:1  COG:ECs0587 KEGG:ns NR:ns ## COG: ECs0587 COG0652 # Protein_GI_number: 15829841 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Escherichia coli O157:H7 # 1     164       1     164     164     328  100.0  2e-90
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMK
QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY
CVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>gi|223713556|gb|ACDM01000042.1| GENE    13     12239  -     12961    605    240 aa, chain + ## HITS:1  COG:ECs0586 KEGG:ns NR:ns ## COG: ECs0586 COG2908 # Protein_GI_number: 15829840 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     240       1     240     240     491   99.0  1e-139
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMA
AAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCT
DDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVV
SAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>gi|223713556|gb|ACDM01000042.1| GENE    14     13079  -     13588    538    169 aa, chain + ## HITS:1  COG:ECs0585 KEGG:ns NR:ns ## COG: ECs0585 COG0041 # Protein_GI_number: 15829839 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Escherichia coli O157:H7 # 1     169       1     169     169     280  100.0  1e-75
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEE
NGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLA
IGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>gi|223713556|gb|ACDM01000042.1| GENE    15     13585  -     14652   1326    355 aa, chain + ## HITS:1  COG:purK KEGG:ns NR:ns ## COG: purK COG0026 # Protein_GI_number: 16128506 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Escherichia coli K12 # 1     355       1     355     355     696   99.0  0
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTR
ELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVK
RRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLT
HNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELA
PRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLV
HLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>gi|223713556|gb|ACDM01000042.1| GENE    16     14847  -     15740   1035    297 aa, chain - ## HITS:1  COG:arcC KEGG:ns NR:ns ## COG: arcC COG0549 # Protein_GI_number: 16128505 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1     297       1     297     297     551   99.0  1e-157
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLAL
QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP
EKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI
CSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>gi|223713556|gb|ACDM01000042.1| GENE    17     15737  -     16552    500    271 aa, chain - ## HITS:1  COG:no KEGG:EcolC_3102 NR:ns ## KEGG: EcolC_3102 # Name: not_defined # Def: putative carboxylase # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     271       1     271     271     526   98.0  1e-148
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRKGSGFGPGGWVLRRAQ
FDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETG
LFGPLAMAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAA
WYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAV
AIDSLLALGHTSGADTLLGFWLGQQLLQGTP
>gi|223713556|gb|ACDM01000042.1| GENE    18     16563  -     17822   1220    419 aa, chain - ## HITS:1  COG:no KEGG:EC55989_0533 NR:ns ## KEGG: EC55989_0533 # Name: ylbE # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     419       1     419     419     814   99.0  0
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNQGKTLLHAGPPMRWQEMTGPMKG
ACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDG
NRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMEHGIDLTAMMAQGI
TMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAA
MDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMG
DSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQG
ACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>gi|223713556|gb|ACDM01000042.1| GENE    19     17832  -     19499   1731    555 aa, chain - ## HITS:1  COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1     555       1     555     555    1023   98.0  0
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNAT
PNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDASL
ALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKSRAREKGLLVMGPDCGTSMI
AGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISA
LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVW
FASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADD
THHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIG
FGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVS
SLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPV
AGGNKKLARLLERLQ
>gi|223713556|gb|ACDM01000042.1| GENE    20     19816  -     20865    910    349 aa, chain + ## HITS:1  COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1     349       1     349     349     708  100.0  0
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGG
TNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAI
SYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQ
AWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLL
GLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFN
QVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>gi|223713556|gb|ACDM01000042.1| GENE    21     20887  -     22122   1110    411 aa, chain + ## HITS:1  COG:ylbB KEGG:ns NR:ns ## COG: ylbB COG0624 # Protein_GI_number: 16128500 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1     411       1     411     411     876  100.0  0
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVG
NLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEV
VAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPR
QDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVY
AFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQ
QLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDA
QIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>gi|223713556|gb|ACDM01000042.1| GENE    22     22133  -     22918    969    261 aa, chain + ## HITS:1  COG:ylbA KEGG:ns NR:ns ## COG: ylbA COG3257 # Protein_GI_number: 16128499 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Escherichia coli K12 # 1     261       1     261     261     495   99.0  1e-140
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFV
DYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFV
NAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILPDFLPKELGFDMN
MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYG
VGRGEAFSYIYSKDCNRDVEI
>gi|223713556|gb|ACDM01000042.1| GENE    23     23146  -     24291   1079    381 aa, chain - ## HITS:1  COG:ybbZ KEGG:ns NR:ns ## COG: ybbZ COG1929 # Protein_GI_number: 16128498 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Escherichia coli K12 # 1     381       1     381     381     651  100.0  0
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNI
VTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRH
ALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECD
PRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEIN
VCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTA
GGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGET
NLFNSARNIACAIKIGQGIKN
>gi|223713556|gb|ACDM01000042.1| GENE    24     24313  -     25614   1047    433 aa, chain - ## HITS:1  COG:ECs0575 KEGG:ns NR:ns ## COG: ECs0575 COG2233 # Protein_GI_number: 15829829 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Escherichia coli O157:H7 # 1     433       3     435     435     748  100.0  0
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFA
QAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFS
GLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVM
CLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPG
IILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFS
PFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLL
FSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLA
VLMDNLIPWERIE
>gi|223713556|gb|ACDM01000042.1| GENE    25     25671  -     27032   1564    453 aa, chain - ## HITS:1  COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1     453       1     453     453     946  100.0  0
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHT
HISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA
AQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELG
QPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHV
CHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM
WEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMF
GKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGA
RITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>gi|223713556|gb|ACDM01000042.1| GENE    26     27092  -     28546   1431    484 aa, chain - ## HITS:1  COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 1     463       1     463     463     806   98.0  0
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTF
SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWF
GLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVL
NKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVW
AAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDI
VQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLL
ICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDN
GFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQ
KTIG
>gi|223713556|gb|ACDM01000042.1| GENE    27     28715  -     29593   1063    292 aa, chain - ## HITS:1  COG:ybbQ KEGG:ns NR:ns ## COG: ybbQ COG2084 # Protein_GI_number: 16128493 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1     292       1     292     292     551  100.0  1e-157
MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIF
IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS
GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI
EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN
LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA
>gi|223713556|gb|ACDM01000042.1| GENE    28     29693  -     30469    846    258 aa, chain - ## HITS:1  COG:gip KEGG:ns NR:ns ## COG: gip COG3622 # Protein_GI_number: 16128492 # Func_class: G Carbohydrate transport and metabolism # Function: Hydroxypyruvate isomerase # Organism: Escherichia coli K12 # 1     258       1     258     258     556  100.0  1e-158
MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVEFMFPYDYDIEELKHVLASNKLEHTLHN
LPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA
TLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIY
HMQRMEGELTNTMTQWADKIGHLQIADNPHRGEPGTGEINYDYLFKVIENSDYNGWVGCE
YKPQTTTEAGLRWMDPYR
>gi|223713556|gb|ACDM01000042.1| GENE    29     30482  -     32263   2197    593 aa, chain - ## HITS:1  COG:ECs0568 KEGG:ns NR:ns ## COG: ECs0568 COG3960 # Protein_GI_number: 15829822 # Func_class: R General function prediction only # Function: Glyoxylate carboligase # Organism: Escherichia coli O157:H7 # 1     593       1     593     593    1206  100.0  0
MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEG
YTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIE
AIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEP
LPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMG
WGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVH
IDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLL
RKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGP
LGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIR
QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKA
LMAQYRVPVVVEVILERVTNISMGSELDNVMEFEDIADNAADAPTETCFMHYE
>gi|223713556|gb|ACDM01000042.1| GENE    30     32353  -     33123    658    256 aa, chain - ## HITS:1  COG:ECs0567 KEGG:ns NR:ns ## COG: ECs0567 COG1414 # Protein_GI_number: 15829821 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     256      16     271     271     496   99.0  1e-140
MAQKGAQALERGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ
LGWWHIGLGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLEC
KSMVRMCAPLGSRLPLHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKD
LEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVR
DTARDISTALGLKAHP
>gi|223713556|gb|ACDM01000042.1| GENE    31     33246  -     33728    505    160 aa, chain - ## HITS:1  COG:ECs0566 KEGG:ns NR:ns ## COG: ECs0566 COG3194 # Protein_GI_number: 15829820 # Func_class: F Nucleotide transport and metabolism # Function: Ureidoglycolate hydrolase # Organism: Escherichia coli O157:H7 # 1     160       1     160     160     331  100.0  3e-91
MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDRTLISINRAQ
PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDLSTLRAFITNGEQGVNYHR
NVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
>gi|223713556|gb|ACDM01000042.1| GENE    32     33958  -     34884    614    308 aa, chain + ## HITS:1  COG:ECs0565 KEGG:ns NR:ns ## COG: ECs0565 COG0583 # Protein_GI_number: 15829819 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     308       1     308     308     612  100.0  1e-175
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTA
AGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINNLLYNPQAVAQLLAWLNERYP
FTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSLDPLGSVQWRFVMAADHPLA
NVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
LPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL
EIFGNPRS
>gi|223713556|gb|ACDM01000042.1| GENE    33     34953  -     36047   1150    364 aa, chain + ## HITS:1  COG:ybbB KEGG:ns NR:ns ## COG: ybbB COG2603 # Protein_GI_number: 16128487 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1     364       1     364     364     724  100.0  0
MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGS
DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
VKAR
>gi|223713556|gb|ACDM01000042.1| GENE    34     36163  -     36534    316    123 aa, chain + ## HITS:1  COG:no KEGG:SDY_0400 NR:ns ## KEGG: SDY_0400 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1     123      13     135     135     238  100.0  4e-62
MLHTANPVIKHKAGLLNLAEELSNVSKACKIMGVSRDTFYRYRELVAEGGVDAQINRSRR
APNLKNRTDEATEQAVVDYAVAFPTHGQHRASNELRKQGVFISDSGVRSVWLLHNLENLK
RRY
>gi|223713556|gb|ACDM01000042.1| GENE    35     37520  -     38230    138    236 aa, chain - ## HITS:1  COG:ECs0560 KEGG:ns NR:ns ## COG: ECs0560 COG3209 # Protein_GI_number: 15829814 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 2     236    1164    1398    1398     486   97.0  1e-137
MLALMDADGNIAWSGEYDEWGNQLNEENPHHLHQPYRLPGQQYDKESGLYYNRNRYYDPL
QGRYITQDPIGLEGGWSLYAYPLNPVNGIDPLGLSPADVALIRRKDQLNHQRAWDILSDT
YEDMKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRDYGLNLFGMYGRKV
KLSHSEMIEDNKKDLAVNDHGLTCPSTTDCSDRCSDYINPEHKKTIKALQDAGYLK
>gi|223713556|gb|ACDM01000042.1| GENE    36     38230  -     38574    147    114 aa, chain - ## HITS:1  COG:no KEGG:B21_00454 NR:ns ## KEGG: B21_00454 # Name: ybbC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     114       9     122     122     221  100.0  9e-57
MLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKYSVKNTVKTETMAIQLAEIYVRYRY
GERIAEEEKPYLITELPDSWVVEGAKLPYEVAGGVFIIEINKKNGCVLNFLHSK
>gi|223713556|gb|ACDM01000042.1| GENE    37     38638  -     39510    227    290 aa, chain - ## HITS:1  COG:rhsD KEGG:ns NR:ns ## COG: rhsD COG3209 # Protein_GI_number: 16128481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     290    1137    1426    1426     604   99.0  1e-173
MEQLARQVEPEYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHV
YQPYRLPGQQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPM
GLLQTWDDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIV
CKDTNGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDK
NLVRSKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:01:21 2011
 Seq name: gi|223713555|gb|ACDM01000043.1| Escherichia sp. 4_1_40B cont1.43, whole genome shotgun sequence 
 Length of sequence - 147848 bp
 Number of predicted genes - 141, with homology - 140
 Number of transcription units - 86, operones - 32 average op.length -  2.7
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          2 -      2612   1354  ## COG3209 Rhs family protein
                               -    Prom      2656 -      2715   11.2 
                               -    Term      2983 -      3036    5.5 
     2     2 Op  1  11/0.056   -    CDS       3043 -      5457   2586  ## COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
     3     2 Op  2     .       -    CDS       5454 -      6140    313  ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc)
                               +    Prom      5797 -      5856    1.9 
     4     3 Op  1   5/0.222   +    CDS       6078 -      6734    554  ## COG2755 Lysophospholipase L1 and related esterases
     5     3 Op  2   3/0.611   +    CDS       6724 -      7533    229  ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9
     6     3 Op  3     .       +    CDS       7594 -      8448   1340  ## COG3118 Thioredoxin domain-containing protein
                               +    Term      8483 -      8526    9.1 
                               -    Term      8460 -      8510   12.8 
     7     4 Op  1   4/0.500   -    CDS       8511 -      9290    834  ## COG0390 ABC-type uncharacterized transport system, permease component
     8     4 Op  2     .       -    CDS       9277 -      9954    173  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               -    Prom      9981 -     10040    3.8 
                               +    Prom      9945 -     10004    4.0 
     9     5 Op  1  26/0.000   +    CDS      10100 -     11017   1383  ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs
    10     5 Op  2     .       +    CDS      11014 -     11472    412  ## COG1585 Membrane protein implicated in regulation of membrane protease activity
    11     6 Tu  1     .       -    CDS      11473 -     11880    433  ## COG0789 Predicted transcriptional regulators
                               -    Prom     11920 -     11979    3.8 
    12     7 Op  1   4/0.500   -    CDS      12005 -     13294   1498  ## COG0531 Amino acid transporters
    13     7 Op  2     .       -    CDS      13300 -     14232    925  ## COG2066 Glutaminase
                               -    Prom     14314 -     14373    3.4 
                               +    Prom     14192 -     14251    7.1 
    14     8 Tu  1     .       +    CDS      14494 -     16998   2802  ## COG2217 Cation transport ATPase
                               +    Term     17015 -     17046    0.7 
    15     9 Tu  1     .       -    CDS      17314 -     17655    345  ## COG3093 Plasmid maintenance system antidote protein
                               -    Prom     17698 -     17757    4.9 
                               +    Prom     17650 -     17709    2.7 
    16    10 Tu  1   5/0.222   +    CDS      17793 -     18587    759  ## COG3735 Uncharacterized protein conserved in bacteria
                               +    Term     18640 -     18688   -0.1 
                               +    Prom     18591 -     18650    7.6 
    17    11 Tu  1     .       +    CDS      18791 -     19270    738  ## COG2606 Uncharacterized conserved protein
                               +    Term     19276 -     19311    7.4 
    18    12 Tu  1     .       -    CDS      19307 -     20959   1789  ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
                               -    Prom     21004 -     21063    2.6 
    19    13 Tu  1     .       +    CDS      21177 -     22397   1218  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     22404 -     22443    8.0 
                               +    Prom     22474 -     22533    5.2 
    20    14 Tu  1     .       +    CDS      22635 -     24311    501  ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2
                               +    Term     24363 -     24428    3.1 
                               -    Term     24349 -     24414    3.1 
    21    15 Tu  1     .       -    CDS      24444 -     25748   1391  ## COG0524 Sugar kinases, ribokinase family
                               -    Prom     25841 -     25900    1.7 
                               +    Prom     25720 -     25779    2.7 
    22    16 Tu  1     .       +    CDS      25900 -     26859    692  ## COG0657 Esterase/lipase
                               +    Term     26894 -     26939    8.0 
                               -    Term     26795 -     26831    2.0 
    23    17 Tu  1     .       -    CDS      26856 -     27818    931  ## COG0276 Protoheme ferro-lyase (ferrochelatase)
                               -    Prom     27843 -     27902    3.9 
                               -    Term     27927 -     27958    2.5 
    24    18 Tu  1     .       -    CDS      28054 -     28698    937  ## COG0563 Adenylate kinase and related kinases
                               -    Prom     28739 -     28798    3.9 
                               -    Term     28834 -     28873    8.3 
    25    19 Tu  1     .       -    CDS      28879 -     30753   2714  ## COG0326 Molecular chaperone, HSP90 family
                               -    Prom     30775 -     30834    3.8 
                               -    Term     30816 -     30861    9.0 
    26    20 Op  1  23/0.000   -    CDS      30863 -     31468    519  ## COG0353 Recombinational DNA repair protein (RecF pathway)
    27    20 Op  2  30/0.000   -    CDS      31468 -     31797    227  ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21
                               -    Term     31820 -     31848    1.6 
    28    20 Op  3   8/0.056   -    CDS      31850 -     33781   1987  ## COG2812 DNA polymerase III, gamma/tau subunits
                               -    Prom     33818 -     33877    2.5 
                               -    Term     33822 -     33858    2.2 
    29    21 Tu  1     .       -    CDS      33910 -     34461    830  ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins
    30    22 Tu  1     .       -    CDS      34614 -     34991    351  ## COG2832 Uncharacterized protein conserved in bacteria
                               -    Prom     35019 -     35078    4.0 
                               +    Prom     34978 -     35037    6.3 
    31    23 Op  1     .       +    CDS      35061 -     35588    523  ## COG3923 Primosomal replication protein N''
    32    23 Op  2     .       +    CDS      35602 -     35763    201  ## B21_00422 hypothetical protein
                               +    Term     35945 -     35978    4.1 
                               -    Term     35805 -     35841    2.4 
    33    24 Tu  1     .       -    CDS      35975 -     39337   3734  ## COG3264 Small-conductance mechanosensitive channel
                               -    Prom     39383 -     39442    3.6 
    34    25 Tu  1     .       +    CDS      39343 -     39534     58  ## gi|300919868|ref|ZP_07136335.1| conserved domain protein
                               +    Term     39721 -     39755    0.6 
                               -    Term     39422 -     39451    1.4 
    35    26 Tu  1     .       -    CDS      39465 -     40112    476  ## COG1309 Transcriptional regulator
                               -    Prom     40173 -     40232    5.0 
                               +    Prom     40116 -     40175    3.6 
    36    27 Op  1  27/0.000   +    CDS      40254 -     41447   1197  ## COG0845 Membrane-fusion protein
    37    27 Op  2     .       +    CDS      41470 -     44619   3445  ## COG0841 Cation/multidrug efflux pump
                               +    Term     44639 -     44666    1.5 
    38    28 Op  1     .       +    CDS      45165 -     45539    253  ## ECDH10B_0417 hypothetical protein
    39    28 Op  2     .       +    CDS      45565 -     45783    178  ## UTI89_C0487 hemolysin expression-modulating protein
                               +    Term     45877 -     45917   -0.5 
                               +    Prom     45785 -     45844    5.8 
    40    29 Tu  1     .       +    CDS      45955 -     46506    435  ## COG0110 Acetyltransferase (isoleucine patch superfamily)
                               +    Prom     46527 -     46586    3.3 
    41    30 Tu  1     .       +    CDS      46622 -     47092    443  ## G2583_0570 hypothetical protein
                               +    Prom     47162 -     47221    3.2 
    42    31 Tu  1     .       +    CDS      47250 -     48806   1231  ## COG4943 Predicted signal transduction protein containing sensor and EAL domains
                               +    Term     48813 -     48860   -0.9 
    43    32 Tu  1     .       -    CDS      48848 -     49201    485  ## COG5507 Uncharacterized conserved protein
                               - 5S_RRNA     49312 -     49425  100.0  # ECU82664 [D:55896..56009] # 4.5S ribosomal RNA # Escherichia coli #  Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
    44    33 Tu  1     .       +    CDS      49580 -     49891    288  ## COG3695 Predicted methylated DNA-protein cysteine methyltransferase
                               +    Term     50004 -     50040    2.7 
                               -    Term     49880 -     49911    4.1 
    45    34 Tu  1     .       -    CDS      49922 -     50494    443  ## COG3126 Uncharacterized protein conserved in bacteria
                               -    Prom     50553 -     50612    2.6 
                               +    Prom     50613 -     50672    2.9 
    46    35 Tu  1     .       +    CDS      50712 -     51572    731  ## COG1946 Acyl-CoA thioesterase
                               +    Term     51578 -     51617    5.2 
                               -    Term     51568 -     51602    3.3 
    47    36 Op  1  24/0.000   -    CDS      51621 -     52907   1537  ## COG0004 Ammonia permease
    48    36 Op  2   4/0.500   -    CDS      52937 -     53275    449  ## COG0347 Nitrogen regulatory protein PII
                               -    Prom     53373 -     53432    5.6 
                               -    Term     53384 -     53419    4.5 
    49    37 Op  1  35/0.000   -    CDS      53456 -     55237    225  ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P
    50    37 Op  2   3/0.611   -    CDS      55230 -     57002   1658  ## COG1132 ABC-type multidrug transport system, ATPase and permease components
    51    37 Op  3   1/0.917   -    CDS      57032 -     57490    387  ## COG1522 Transcriptional regulators
                               -    Prom     57521 -     57580    7.5 
                               -    Term     57598 -     57625    1.5 
    52    38 Tu  1     .       -    CDS      57643 -     58461    700  ## COG0561 Predicted hydrolases of the HAD superfamily
                               -    Prom     58492 -     58551    2.6 
                               +    Prom     58477 -     58536    3.0 
    53    39 Op  1   5/0.222   +    CDS      58561 -     60261    995  ## COG4533 ABC-type uncharacterized transport system, periplasmic component
                               +    Term     60285 -     60313   -0.0 
    54    39 Op  2     .       +    CDS      60326 -     61021    694  ## COG0603 Predicted PP-loop superfamily ATPase
    55    40 Op  1   5/0.222   -    CDS      61073 -     61471    371  ## COG0824 Predicted thioesterase
                               -    Prom     61502 -     61561    2.7 
    56    40 Op  2   6/0.056   -    CDS      61565 -     61936    561  ## COG1555 DNA uptake protein and related DNA-binding proteins
                               -    Prom     61983 -     62042    2.3 
                               -    Term     62006 -     62043    7.1 
    57    41 Tu  1     .       -    CDS      62087 -     63958   2299  ## COG0760 Parvulin-like peptidyl-prolyl isomerase
                               -    Prom     64080 -     64139    3.5 
                               -    Term     64083 -     64114    2.5 
    58    42 Op  1  16/0.000   -    CDS      64150 -     64422    443  ## COG0776 Bacterial nucleoid DNA-binding protein
                               -    Prom     64478 -     64537    3.4 
                               -    Term     64557 -     64598    8.5 
    59    42 Op  2  18/0.000   -    CDS      64631 -     66985   3077  ## COG0466 ATP-dependent Lon protease, bacterial type
                               -    Prom     67095 -     67154    4.5 
                               -    Term     67109 -     67139    2.7 
    60    42 Op  3  24/0.000   -    CDS      67173 -     68447    238  ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16
    61    42 Op  4  29/0.000   -    CDS      68573 -     69196    643  ## COG0740 Protease subunit of ATP-dependent Clp proteases
                               -    Prom     69230 -     69289    5.2 
                               -    Term     69371 -     69408    6.0 
    62    42 Op  5   2/0.778   -    CDS      69442 -     70740   1769  ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
                               -    Prom     70879 -     70938    6.0 
                               -    Term     70993 -     71031    6.2 
    63    43 Tu  1     .       -    CDS      71084 -     71401    273  ## COG0271 Stress-induced morphogen (activity unknown)
                               -    Prom     71568 -     71627    5.4 
                               +    Prom     71605 -     71664    3.4 
    64    44 Op  1   1/0.917   +    CDS      71706 -     72284    680  ## COG3056 Uncharacterized lipoprotein
    65    44 Op  2   5/0.222   +    CDS      72328 -     73803   1373  ## COG0477 Permeases of the major facilitator superfamily
                               +    Prom     73967 -     74026    9.7 
    66    45 Op  1  25/0.000   +    CDS      74263 -     75210    868  ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2
    67    45 Op  2  20/0.000   +    CDS      75232 -     77223   2113  ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
    68    45 Op  3  16/0.000   +    CDS      77213 -     77827    683  ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3
    69    45 Op  4   7/0.056   +    CDS      77827 -     78156    293  ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4
    70    45 Op  5   2/0.778   +    CDS      78171 -     79058    878  ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor)
                               +    Term     79079 -     79105   -1.0 
                               +    Prom     79127 -     79186    3.2 
    71    46 Tu  1     .       +    CDS      79207 -     80571   1544  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     80694 -     80721   -0.8 
                               -    Term     80539 -     80591    5.4 
    72    47 Tu  1     .       -    CDS      80699 -     81190    707  ## COG1666 Uncharacterized protein conserved in bacteria
                               -    Prom     81216 -     81275    2.8 
                               +    Prom     81176 -     81235    2.5 
    73    48 Op  1   4/0.500   +    CDS      81358 -     82269    792  ## COG1893 Ketopantoate reductase
    74    48 Op  2     .       +    CDS      82232 -     82822    801  ## COG0693 Putative intracellular protease/amidase
                               -    Term     82675 -     82713    3.1 
    75    49 Tu  1     .       -    CDS      82876 -     84324   1710  ## COG0301 Thiamine biosynthesis ATP pyrophosphatase
                               -    Prom     84519 -     84578    3.5 
                               +    Prom     84268 -     84327    3.1 
    76    50 Op  1  22/0.000   +    CDS      84530 -     84772    349  ## COG1722 Exonuclease VII small subunit
    77    50 Op  2  13/0.028   +    CDS      84772 -     85671    899  ## COG0142 Geranylgeranyl pyrophosphate synthase
    78    50 Op  3   3/0.611   +    CDS      85696 -     87558   2039  ## COG1154 Deoxyxylulose-5-phosphate synthase
                               +    Prom     87593 -     87652    3.8 
    79    51 Tu  1     .       +    CDS      87738 -     88712    969  ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
                               -    Term     88704 -     88757    3.4 
    80    52 Op  1  12/0.028   -    CDS      88766 -     89284    612  ## COG1267 Phosphatidylglycerophosphatase A and related proteins
    81    52 Op  2  11/0.056   -    CDS      89262 -     90239   1087  ## COG0611 Thiamine monophosphate kinase
    82    52 Op  3  17/0.000   -    CDS      90317 -     90736    535  ## COG0781 Transcription termination factor
    83    52 Op  4   6/0.056   -    CDS      90756 -     91226    617  ## COG0054 Riboflavin synthase beta-chain
    84    52 Op  5  14/0.028   -    CDS      91315 -     92418    939  ## COG1985 Pyrimidine reductase, riboflavin biosynthesis
    85    52 Op  6     .       -    CDS      92422 -     92871    447  ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
                               -    Prom     92898 -     92957    4.6 
                               +    Prom     92938 -     92997    3.1 
    86    53 Tu  1     .       +    CDS      93022 -     93561    398  ## ECs0465 hypothetical protein
                               +    Term     93567 -     93607    1.4 
                               +    Prom     93723 -     93782    7.7 
    87    54 Tu  1     .       +    CDS      93860 -     94744   1201  ## COG3248 Nucleoside-binding outer membrane protein
                               +    Term     94749 -     94792    7.4 
                               -    Term     94741 -     94774    4.1 
    88    55 Tu  1     .       -    CDS      94921 -     95268    471  ## c0520 hypothetical protein
                               -    Prom     95297 -     95356    4.5 
                               -    Term     95336 -     95377    8.1 
    89    56 Op  1  31/0.000   -    CDS      95397 -     96368   1100  ## COG0341 Preprotein translocase subunit SecF
    90    56 Op  2  25/0.000   -    CDS      96379 -     98193   2041  ## COG0342 Preprotein translocase subunit SecD
    91    56 Op  3  15/0.000   -    CDS      98254 -     98586    517  ## COG1862 Preprotein translocase subunit YajC
    92    56 Op  4  17/0.000   -    CDS      98609 -     99736   1048  ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase
    93    56 Op  5     .       -    CDS      99792 -    100862   1171  ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
                               -    Prom    100888 -    100947    4.0 
                               +    Prom    100831 -    100890    1.9 
    94    57 Tu  1     .       +    CDS     100955 -    101536    478  ## COG3124 Uncharacterized protein conserved in bacteria
                               -    Term    101375 -    101417   -1.0 
    95    58 Tu  1     .       -    CDS     101541 -    103355   1669  ## COG0366 Glycosidases
    96    59 Op  1   5/0.222   -    CDS     103514 -    104887   1577  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               -    Term    104906 -    104941    6.4 
    97    59 Op  2   4/0.500   -    CDS     104963 -    106282   1499  ## COG1114 Branched-chain amino acid permeases
                               -    Prom    106431 -    106490    5.3 
                               -    Term    106629 -    106662    3.1 
    98    60 Op  1  40/0.000   -    CDS     106689 -    107984   1104  ## COG0642 Signal transduction histidine kinase
                               -    Term    108001 -    108040    3.3 
    99    60 Op  2     .       -    CDS     108042 -    108731    657  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               -    Prom    108755 -    108814    5.2 
                               +    Prom    108731 -    108790    3.8 
   100    61 Op  1  28/0.000   +    CDS     108921 -    110123    967  ## COG0420 DNA repair exonuclease
   101    61 Op  2   2/0.778   +    CDS     110120 -    113266   2982  ## COG0419 ATPase involved in DNA repair
   102    61 Op  3     .       +    CDS     113308 -    114576    958  ## COG2814 Arabinose efflux permease
                               +    Term    114675 -    114724    2.2 
                               -    Term    114661 -    114710    6.0 
   103    62 Tu  1     .       -    CDS     114719 -    115627    292  ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase
                               -    Prom    115716 -    115775    4.3 
                               +    Prom    115662 -    115721    4.1 
   104    63 Tu  1     .       +    CDS     115752 -    116663   1187  ## COG2974 DNA recombination-dependent growth factor C
   105    64 Tu  1     .       -    CDS     116821 -    117024    131  ## ECH74115_0466 hypothetical protein
                               -    Prom    117198 -    117257    7.2 
                               -    Term    117267 -    117303    3.0 
   106    65 Op  1     .       -    CDS     117310 -    117594    287  ## COG3123 Uncharacterized protein conserved in bacteria
   107    65 Op  2     .       -    CDS     117666 -    118343    646  ## S0334 hypothetical protein
                               -    Prom    118502 -    118561   11.1 
   108    66 Op  1     .       -    CDS     118601 -    118792    229  ## LF82_2523 uncharacterized protein YaiA
   109    66 Op  2   1/0.917   -    CDS     118842 -    119366    339  ## COG0703 Shikimate kinase
                               -    Prom    119417 -    119476    5.2 
                               -    Term    119451 -    119488   -0.4 
   110    67 Tu  1     .       -    CDS     119549 -    120007    397  ## COG1671 Uncharacterized protein conserved in bacteria
                               -    Prom    120098 -    120157    3.5 
                               +    Prom    120026 -    120085    4.3 
   111    68 Tu  1     .       +    CDS     120127 -    120936    903  ## COG0345 Pyrroline-5-carboxylate reductase
                               +    Term    120945 -    120997   11.3 
   112    69 Tu  1     .       -    CDS     120953 -    122053    674  ## COG2199 FOG: GGDEF domain
                               -    Prom    122081 -    122140    3.2 
   113    70 Tu  1     .       -    CDS     122170 -    122490    239  ## APECO1_1624 hypothetical protein
                               -    Term    122561 -    122603   11.1 
   114    71 Op  1     .       -    CDS     122609 -    124024   1301  ## COG1785 Alkaline phosphatase
                               -    Prom    124064 -    124123    5.8 
   115    71 Op  2     .       -    CDS     124125 -    124385    266  ## SSON_0357 hypothetical protein
                               -    Prom    124569 -    124628    8.0 
   116    72 Tu  1     .       +    CDS     124848 -    125942   1103  ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes
                               +    Term    125951 -    125988    5.1 
   117    73 Tu  1     .       -    CDS     125966 -    126178    358  ## UTI89_C0397 hypothetical protein
                               -    Prom    126258 -    126317    5.7 
                               +    Prom    126328 -    126387    3.8 
   118    74 Tu  1     .       +    CDS     126438 -    126746    318  ## APECO1_1629 hypothetical protein
   119    75 Op  1     .       -    CDS     126805 -    127899   1048  ## JW0369 predicted DNA-binding transcriptional regulator
   120    75 Op  2     .       -    CDS     127912 -    129132   1310  ## COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components
   121    75 Op  3     .       -    CDS     129152 -    129346    103  ## ECIAI1_0372 hypothetical protein
                               -    Prom    129390 -    129449    3.1 
                               +    Prom    129349 -    129408    3.9 
   122    76 Tu  1     .       +    CDS     129484 -    130641   1058  ## COG1680 Beta-lactamase class C and other penicillin binding proteins
                               +    Term    130651 -    130699   10.6 
   123    77 Op  1     .       -    CDS     130642 -    131265    347  ## SSON_0350 putative DNA-binding transcriptional regulator
                               -    Prom    131289 -    131348    1.7 
   124    77 Op  2     .       -    CDS     131353 -    134259   2731  ## COG3468 Type V secretory pathway, adhesin AidA
                               +    Prom    134120 -    134179    2.8 
   125    78 Op  1     .       +    CDS     134217 -    134408    110  ## 
   126    78 Op  2     .       +    CDS     134458 -    134613     59  ## ECDH10B_0326 hypothetical protein
                               +    Prom    134697 -    134756    3.2 
   127    79 Tu  1     .       +    CDS     134783 -    135757   1129  ## COG0113 Delta-aminolevulinic acid dehydratase
   128    80 Op  1   5/0.222   -    CDS     135864 -    136715    845  ## COG2175 Probable taurine catabolism dioxygenase
   129    80 Op  2   7/0.056   -    CDS     136712 -    137539   1102  ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
   130    80 Op  3   6/0.056   -    CDS     137536 -    138303    267  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
   131    80 Op  4     .       -    CDS     138316 -    139278   1168  ## COG4521 ABC-type taurine transport system, periplasmic component
                               -    Prom    139358 -    139417    4.1 
   132    81 Tu  1     .       +    CDS     139232 -    139456    131  ## EcE24377A_0388 hypothetical protein
                               +    Prom    139622 -    139681    7.9 
   133    82 Op  1   1/0.917   +    CDS     139894 -    140565    400  ## COG2120 Uncharacterized proteins, LmbE homologs
   134    82 Op  2     .       +    CDS     140575 -    141771    708  ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis
   135    82 Op  3     .       +    CDS     141620 -    142330    412  ## COG0110 Acetyltransferase (isoleucine patch superfamily)
   136    82 Op  4     .       +    CDS     142332 -    143105    858  ## JW0349 hypothetical protein
                               +    Term    143219 -    143277    8.1 
                               +    Prom    143212 -    143271    5.8 
   137    83 Op  1   2/0.778   +    CDS     143293 -    143568    282  ## COG1937 Uncharacterized protein conserved in bacteria
   138    83 Op  2  12/0.028   +    CDS     143603 -    144712   1227  ## COG1062 Zn-dependent alcohol dehydrogenases, class III
                               +    Term    144728 -    144760    1.3 
   139    84 Tu  1     .       +    CDS     144806 -    145639    603  ## COG0627 Predicted esterase
   140    85 Tu  1     .       -    CDS     145863 -    146402    652  ## COG3122 Uncharacterized protein conserved in bacteria
                               -    Prom    146430 -    146489    3.1 
   141    86 Tu  1     .       -    CDS     146504 -    147715   1063  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    147767 -    147826    4.0 
Predicted protein(s)
>gi|223713555|gb|ACDM01000043.1| GENE     1         2  -      2612   1354    870 aa, chain - ## HITS:1  COG:rhsD KEGG:ns NR:ns ## COG: rhsD COG3209 # Protein_GI_number: 16128481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     870       1     870    1426    1666  100.0  0
MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPG
ETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDIRLQLRDDGLILNDNGGRS
IHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQ
GPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGRTLTYRREAAGDLAGEITGVTDG
AGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASAFPDTLPGTEYGPDRGIRLSAVWL
MHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPE
MRYRYDDTGRVVEQLNPAGLSYRYLYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELA
DGSVTRSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTA
VVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRY
GQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLTSVKDAQGRETRYEY
NAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVF
SYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAE
QWQYDGHGWLTDISHLSEGHRVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYN
EQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNA
AYELTSTYTPAGQLQSQHLNSLVYDRDYGW
>gi|223713555|gb|ACDM01000043.1| GENE     2      3043  -      5457   2586    804 aa, chain - ## HITS:1  COG:ybbP KEGG:ns NR:ns ## COG: ybbP COG3127 # Protein_GI_number: 16128480 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component # Organism: Escherichia coli K12 # 1     804       1     804     804    1432  100.0  0
MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSS
REVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLK
PQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNLAD
VDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSMERS
QQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLMVLT
LSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLL
ATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGV
LGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR
WQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIVPESFYPVVRARLTAINDKPTEGNED
EALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEF
RAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISL
LDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAG
KKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALL
LSLFGGWLGARLVKGKALFRQFAG
>gi|223713555|gb|ACDM01000043.1| GENE     3      5454  -      6140    313    228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 25     228      20     223     223 125  36 1e-27
MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGKSTLLAILAGLD
DGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS
AESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ
TGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLRLVNGQLQEEA
>gi|223713555|gb|ACDM01000043.1| GENE     4      6078  -      6734    554    218 aa, chain + ## HITS:1  COG:tesA KEGG:ns NR:ns ## COG: tesA COG2755 # Protein_GI_number: 16128478 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Escherichia coli K12 # 11     218       1     208     208     404  100.0  1e-113
MLPLTDGLLKMMNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSASAAWP
ALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQT
EQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEV
YLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS
>gi|223713555|gb|ACDM01000043.1| GENE     5      6724  -      7533    229    269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 14     268       3     249     259 92  32 8e-18
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGF
TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF
GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS
GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM
RYPVTLVTWAVMVLKRLLPGRVMDKILQG
>gi|223713555|gb|ACDM01000043.1| GENE     6      7594  -      8448   1340    284 aa, chain + ## HITS:1  COG:ybbN KEGG:ns NR:ns ## COG: ybbN COG3118 # Protein_GI_number: 16128476 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Escherichia coli K12 # 1     284      13     296     296     481  100.0  1e-136
MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAK
LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQ
AMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLKTIPLQDQD
TRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF
GHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY
>gi|223713555|gb|ACDM01000043.1| GENE     7      8511  -      9290    834    259 aa, chain - ## HITS:1  COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1     259      10     268     268     443  100.0  1e-124
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSV
DDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIP
MQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRA
ALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
YRKFYNSRHQLVVTQLKKK
>gi|223713555|gb|ACDM01000043.1| GENE     8      9277  -      9954    173    225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7     208       1     210     245 71  30 2e-11
MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT
SGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDF
LERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMI
HRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA
>gi|223713555|gb|ACDM01000043.1| GENE     9     10100  -     11017   1383    305 aa, chain + ## HITS:1  COG:ECs0552 KEGG:ns NR:ns ## COG: ECs0552 COG0330 # Protein_GI_number: 15829806 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     536  100.0  1e-152
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN
MMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVL
GSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAER
TKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSAN
KRTQP
>gi|223713555|gb|ACDM01000043.1| GENE    10     11014  -     11472    412    152 aa, chain + ## HITS:1  COG:ybbJ KEGG:ns NR:ns ## COG: ybbJ COG1585 # Protein_GI_number: 16128472 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Escherichia coli K12 # 2     152       1     151     151     241  100.0  3e-64
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMF
AILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSS
WPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
>gi|223713555|gb|ACDM01000043.1| GENE    11     11473  -     11880    433    135 aa, chain - ## HITS:1  COG:ybbI KEGG:ns NR:ns ## COG: ybbI COG0789 # Protein_GI_number: 16128471 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     135       1     135     135     266  100.0  8e-72
MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL
EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADC
PIIENLSGCCHHRAG
>gi|223713555|gb|ACDM01000043.1| GENE    12     12005  -     13294   1498    429 aa, chain - ## HITS:1  COG:ybaT KEGG:ns NR:ns ## COG: ybaT COG0531 # Protein_GI_number: 16128470 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     429       2     430     430     668  100.0  0
MNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSG
YAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQFL
HEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQP
AHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLLY
ISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAVF
NIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYL
AVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIVA
MVMKRNKTV
>gi|223713555|gb|ACDM01000043.1| GENE    13     13300  -     14232    925    310 aa, chain - ## HITS:1  COG:ybaS KEGG:ns NR:ns ## COG: ybaS COG2066 # Protein_GI_number: 16128469 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Escherichia coli K12 # 1     310       1     310     310     609  100.0  1e-174
MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDY
RFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGA
IATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGY
LYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMM
EGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVA
KQLGYNVFKG
>gi|223713555|gb|ACDM01000043.1| GENE    14     14494  -     16998   2802    834 aa, chain + ## HITS:1  COG:ybaR KEGG:ns NR:ns ## COG: ybaR COG2217 # Protein_GI_number: 16128468 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli K12 # 1     834       1     834     834    1477  100.0  0
MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVTGTASAEQLIETIKQAG
YDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNA
LQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIEDDAKRRERQQETAVA
TMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSLWLVIGLITLAVMVFAGGHFYRS
AWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGH
MLEARARQRSSKALEKLLDLTPPTARLVTDEGEKSVPLAEVQPGMLLRLTTGDRVPVDGE
ITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVR
QAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTVLIIACP
CALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGKPQVVAVKT
FADVDEAQALRLAAALEQGSSHPLARAILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHAL
LLGNQALLNEQQVGTKAIEAEITAQASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQ
RLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKHLQSEGRQVAMVGD
GINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLHNMKQNLLG
AFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE
>gi|223713555|gb|ACDM01000043.1| GENE    15     17314  -     17655    345    113 aa, chain - ## HITS:1  COG:ECs0536 KEGG:ns NR:ns ## COG: ECs0536 COG3093 # Protein_GI_number: 15829790 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Escherichia coli O157:H7 # 1     113      19     131     131     202  100.0  2e-52
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLA
KVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYLARREERAKKVA
>gi|223713555|gb|ACDM01000043.1| GENE    16     17793  -     18587    759    264 aa, chain + ## HITS:1  COG:ybaP KEGG:ns NR:ns ## COG: ybaP COG3735 # Protein_GI_number: 16128466 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     264       1     264     264     506  100.0  1e-143
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMAPLPTRLLKKLKN
ADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHISQEMGISPSLFSTQPLWQI
AMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQIAMLLQLPDKGLALLD
DTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
PGRYVVAVGALHLYGEGNLPQMLR
>gi|223713555|gb|ACDM01000043.1| GENE    17     18791  -     19270    738    159 aa, chain + ## HITS:1  COG:ybaK KEGG:ns NR:ns ## COG: ybaK COG2606 # Protein_GI_number: 16128465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     159       1     159     159     292  100.0  2e-79
MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLA
VAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPA
QEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD
>gi|223713555|gb|ACDM01000043.1| GENE    18     19307  -     20959   1789    550 aa, chain - ## HITS:1  COG:ushA KEGG:ns NR:ns ## COG: ushA COG0737 # Protein_GI_number: 16128464 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Escherichia coli K12 # 1     550       1     550     550    1117  100.0  0
MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQK
TLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFD
NPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGN
PEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARAL
PAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADF
EFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQL
EVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISY
KNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKI
KGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSV
YEPKGEVSWQ
>gi|223713555|gb|ACDM01000043.1| GENE    19     21177  -     22397   1218    406 aa, chain + ## HITS:1  COG:fsr KEGG:ns NR:ns ## COG: fsr COG0477 # Protein_GI_number: 16128463 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     406       1     406     406     676  100.0  0
MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFM
QIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLALAGSFGAVLLAA
ALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNV
AWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIINPLPRNKVVLAVSILLILIFSKY
FYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSI
LGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAF
GMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD
>gi|223713555|gb|ACDM01000043.1| GENE    20     22635  -     24311    501    558 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 4     543       5     535     618 197  25 2e-49
MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPEL
AELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVF
GLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDV
GFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGVAF
GAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQ
QPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNL
LPQAGQNLVLAGAILSIMLNPVLFALLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHA
LLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLE
CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIA
RTMLELLETPPAGEVVTG
>gi|223713555|gb|ACDM01000043.1| GENE    21     24444  -     25748   1391    434 aa, chain - ## HITS:1  COG:ECs0530 KEGG:ns NR:ns ## COG: ECs0530 COG0524 # Protein_GI_number: 15829784 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 1     434       1     434     434     914  100.0  0
MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLVDIEAKVDDEFIERYGL
SAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNI
EIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESGERTFAISPGHMNQLRAESIP
EDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKKYNVPVVLTLGTKFVIAENPQWW
QQFLKDHVSILAMNEDEAEALTGESDPLLASDKALDWVDLVLCTAGPIGLYMAGFTEDEA
KRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGA
LAALLHDITANSYHRSNVPNSSKHKFTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGL
PEREDSLEESYWDR
>gi|223713555|gb|ACDM01000043.1| GENE    22     25900  -     26859    692    319 aa, chain + ## HITS:1  COG:aes KEGG:ns NR:ns ## COG: aes COG0657 # Protein_GI_number: 16128460 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Escherichia coli K12 # 1     319       1     319     319     664  100.0  0
MKPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMAT
RAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIG
IDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDSAGAMLALASALWLRD
KQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYY
CLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRM
MKTADEALRDGAQFFTAQL
>gi|223713555|gb|ACDM01000043.1| GENE    23     26856  -     27818    931    320 aa, chain - ## HITS:1  COG:hemH KEGG:ns NR:ns ## COG: hemH COG0276 # Protein_GI_number: 16128459 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Escherichia coli K12 # 1     320       1     320     320     625  100.0  1e-179
MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLLWWPLLRGVILPLRSPR
VAKLYASVWMEGGSPLMVYSRQQQQALAQRLPEMPVALGMSYGSPSLESAVDELLAEHVD
HIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIRDYADNHDYINALANSVRASF
AKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTRELASALGMAPEKVMMTFQSRFGRE
PWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLETLEEIAEQNREVFLGAGGKKYEYIP
ALNATPEHIEMMANLVAAYR
>gi|223713555|gb|ACDM01000043.1| GENE    24     28054  -     28698    937    214 aa, chain - ## HITS:1  COG:ECs0527 KEGG:ns NR:ns ## COG: ECs0527 COG0563 # Protein_GI_number: 15829781 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Escherichia coli O157:H7 # 1     214       1     214     214     404  100.0  1e-113
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT
DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI
VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG
YYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
>gi|223713555|gb|ACDM01000043.1| GENE    25     28879  -     30753   2714    624 aa, chain - ## HITS:1  COG:ECs0526 KEGG:ns NR:ns ## COG: ECs0526 COG0326 # Protein_GI_number: 15829780 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Escherichia coli O157:H7 # 1     624       1     624     624    1183  100.0  0
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGD
GELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLI
GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHL
REGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSE
ITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLY
VQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML
EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYV
SRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPF
QSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVS
TDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQA
LLAERGTLEDPNLFIRRMNQLLVS
>gi|223713555|gb|ACDM01000043.1| GENE    26     30863  -     31468    519    201 aa, chain - ## HITS:1  COG:ECs0525 KEGG:ns NR:ns ## COG: ECs0525 COG0353 # Protein_GI_number: 15829779 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Escherichia coli O157:H7 # 1     201       1     201     201     399  100.0  1e-111
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADC
RTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGP
DDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAELCAQYDVEASRIAHGVPVGGE
LEMVDGTTLSHSLAGRHKIRF
>gi|223713555|gb|ACDM01000043.1| GENE    27     31468  -     31797    227    109 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5     109       9     114     114 92  41 1e-17
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPS
LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
>gi|223713555|gb|ACDM01000043.1| GENE    28     31850  -     33781   1987    643 aa, chain - ## HITS:1  COG:dnaX KEGG:ns NR:ns ## COG: dnaX COG2812 # Protein_GI_number: 16128454 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Escherichia coli K12 # 1     643       1     643     643    1118  100.0  0
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK
GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV
EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM
LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA
ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH
PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ
RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA
TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA
LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL
EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>gi|223713555|gb|ACDM01000043.1| GENE    29     33910  -     34461    830    183 aa, chain - ## HITS:1  COG:apt KEGG:ns NR:ns ## COG: apt COG0503 # Protein_GI_number: 16128453 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Escherichia coli K12 # 1     183       1     183     183     349  100.0  1e-96
MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKV
VGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGD
KVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPF
PGH
>gi|223713555|gb|ACDM01000043.1| GENE    30     34614  -     34991    351    125 aa, chain - ## HITS:1  COG:ECs0521 KEGG:ns NR:ns ## COG: ECs0521 COG2832 # Protein_GI_number: 15829775 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     125       1     125     125     199  100.0  1e-51
MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
KQEKH
>gi|223713555|gb|ACDM01000043.1| GENE    31     35061  -     35588    523    175 aa, chain + ## HITS:1  COG:priC KEGG:ns NR:ns ## COG: priC COG3923 # Protein_GI_number: 16128451 # Func_class: L Replication, recombination and repair # Function: Primosomal replication protein N'' # Organism: Escherichia coli K12 # 1     175       1     175     175     245  100.0  3e-65
MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL
RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER
RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR
>gi|223713555|gb|ACDM01000043.1| GENE    32     35602  -     35763    201     53 aa, chain + ## HITS:1  COG:no KEGG:B21_00422 NR:ns ## KEGG: B21_00422 # Name: ybaM # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      53       1      53      53      72  100.0  3e-12
MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKKLTRDDEAEK
>gi|223713555|gb|ACDM01000043.1| GENE    33     35975  -     39337   3734   1120 aa, chain - ## HITS:1  COG:aefA KEGG:ns NR:ns ## COG: aefA COG3264 # Protein_GI_number: 16128449 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1    1120       1    1120    1120    2077  100.0  0
MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTKADLQAQLDSLNKQKDL
SAQDKLVQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKMRQATAALTALSDVDNDEE
TRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVSLQTQPERVQNAMYNASQQLQ
QIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQRKSLEGNTVLQDTLQKQRDYVT
ANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPDEAARIQANPLVKQELEINQQLSQR
LITATENGNQLMQQNIKVKNWLERALQSERNIKEQIAVLKGSLLLSRILYQQQQTLPSAD
ELENMTNRIADLRLEQFEVNQQRDALFQSDAFVNKLEEGHTNEVNSEVHDALLQVVDMRR
ELLDQLNKQLGNQLMMAINLQINQQQLMSVSKNLKSILTQQIFWVNSNRPMDWDWIKAFP
QSLKDEFKSMKITVNWQKAWPAVFIAFLAGLPLLLIAGLIHWRLGWLKAYQQKLASAVGS
LRNDSQLNTPKAILIDLIRALPVCLIILAVGLILLTMQLNISELLWSFSKKLAIFWLVFG
LCWKVLEKNGVAVRHFGMPEQQTSHWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLG
QAMIFFNLLLIAFLVWPMCRESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLR
LAGRWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPT
IALEQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKN
VTMGSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMT
VFGSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGT
VSKIRIRATTITDFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRK
VLLKAATEHPRVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCR
ENDINIAFNQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG
>gi|223713555|gb|ACDM01000043.1| GENE    34     39343  -     39534     58     63 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|300919868|ref|ZP_07136335.1| ## NR: gi|300919868|ref|ZP_07136335.1| conserved domain protein [Escherichia coli MS 115-1] # 1      61       1      61      71     103   98.0  4e-21
MKVSEPEERPEKVKPQEYHDAVNQNSNDENVQEKSWSQIQGYSLVAGLRSVGHRRYISSK
MAT
>gi|223713555|gb|ACDM01000043.1| GENE    35     39465  -     40112    476    215 aa, chain - ## HITS:1  COG:acrR KEGG:ns NR:ns ## COG: acrR COG1309 # Protein_GI_number: 16128448 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     215       1     215     215     418  100.0  1e-117
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS
EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV
GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF
APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE
>gi|223713555|gb|ACDM01000043.1| GENE    36     40254  -     41447   1197    397 aa, chain + ## HITS:1  COG:ECs0516 KEGG:ns NR:ns ## COG: ECs0516 COG0845 # Protein_GI_number: 15829770 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1     397       1     397     397     660  100.0  0
MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT
SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN
IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI
SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG
KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG
LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV
ISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS
>gi|223713555|gb|ACDM01000043.1| GENE    37     41470  -     44619   3445   1049 aa, chain + ## HITS:1  COG:acrB KEGG:ns NR:ns ## COG: acrB COG0841 # Protein_GI_number: 16128446 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1    1049       1    1049    1049    2000  100.0  0
MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT
VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ
EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS
QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL
TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL
DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ
NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL
SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR
YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT
KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD
AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG
LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR
MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA
MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS
VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL
IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF
FVPVFFVVVRRRFSRKNEDIEHSHTVDHH
>gi|223713555|gb|ACDM01000043.1| GENE    38     45165  -     45539    253    124 aa, chain + ## HITS:1  COG:no KEGG:ECDH10B_0417 NR:ns ## KEGG: ECDH10B_0417 # Name: ybaJ # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1     124       1     124     124     239   99.0  3e-62
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDSTSAINLQLNELIEHIATFAL
NYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPA
SLSC
>gi|223713555|gb|ACDM01000043.1| GENE    39     45565  -     45783    178     72 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C0487 NR:ns ## KEGG: UTI89_C0487 # Name: hha # Def: hemolysin expression-modulating protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      72       5      76      76     130  100.0  1e-29
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY
DKIPSSVWKFIR
>gi|223713555|gb|ACDM01000043.1| GENE    40     45955  -     46506    435    183 aa, chain + ## HITS:1  COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1     183       1     183     183     381  100.0  1e-106
MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEA
YIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVAR
NSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARII
KKL
>gi|223713555|gb|ACDM01000043.1| GENE    41     46622  -     47092    443    156 aa, chain + ## HITS:1  COG:no KEGG:G2583_0570 NR:ns ## KEGG: G2583_0570 # Name: ylaC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     156      14     169     169     304  100.0  8e-82
MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS
GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS
PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS
>gi|223713555|gb|ACDM01000043.1| GENE    42     47250  -     48806   1231    518 aa, chain + ## HITS:1  COG:ylaB KEGG:ns NR:ns ## COG: ylaB COG4943 # Protein_GI_number: 16128441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Escherichia coli K12 # 1     518       1     518     518    1044  100.0  0
MLVRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQ
GKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFP
EPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIG
NAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKG
WHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGK
IVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHI
SINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHE
IYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIE
TSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL
>gi|223713555|gb|ACDM01000043.1| GENE    43     48848  -     49201    485    117 aa, chain - ## HITS:1  COG:ECs0509 KEGG:ns NR:ns ## COG: ECs0509 COG5507 # Protein_GI_number: 15829763 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     117       1     117     117     213  100.0  9e-56
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA
EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
>gi|223713555|gb|ACDM01000043.1| GENE    44     49580  -     49891    288    103 aa, chain + ## HITS:1  COG:ECs0508 KEGG:ns NR:ns ## COG: ECs0508 COG3695 # Protein_GI_number: 15829762 # Func_class: L Replication, recombination and repair # Function: Predicted methylated DNA-protein cysteine methyltransferase # Organism: Escherichia coli O157:H7 # 1     103      27     129     129     202  100.0  8e-53
MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRV
VNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWNY
>gi|223713555|gb|ACDM01000043.1| GENE    45     49922  -     50494    443    190 aa, chain - ## HITS:1  COG:ECs0507 KEGG:ns NR:ns ## COG: ECs0507 COG3126 # Protein_GI_number: 15829761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     190       1     190     190     233   99.0  2e-61
MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPAIQQPNVSGTVWIRQKV
ALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFVLPFNPADVQPNARILLSA
AITVNDKQVFITDTVQPVINQGGTKADLTLVPVQQTAVPVQASGGATTTVPSTSPTQVNP
SSAVPAPTQY
>gi|223713555|gb|ACDM01000043.1| GENE    46     50712  -     51572    731    286 aa, chain + ## HITS:1  COG:ECs0506 KEGG:ns NR:ns ## COG: ECs0506 COG1946 # Protein_GI_number: 15829760 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA thioesterase # Organism: Escherichia coli O157:H7 # 1     286       1     286     286     557  100.0  1e-159
MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF
HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT
MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV
WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN
LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN
>gi|223713555|gb|ACDM01000043.1| GENE    47     51621  -     52907   1537    428 aa, chain - ## HITS:1  COG:ECs0505 KEGG:ns NR:ns ## COG: ECs0505 COG0004 # Protein_GI_number: 15829759 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Escherichia coli O157:H7 # 1     428       1     428     428     727  100.0  0
MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRG
KNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNIELTAVMGSIYQY
IHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGA
LDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAG
SAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGY
IGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG
GVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNS
HGENAYNA
>gi|223713555|gb|ACDM01000043.1| GENE    48     52937  -     53275    449    112 aa, chain - ## HITS:1  COG:ECs0504 KEGG:ns NR:ns ## COG: ECs0504 COG0347 # Protein_GI_number: 15829758 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Escherichia coli O157:H7 # 1     112       1     112     112     196  100.0  1e-50
MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVK
IDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL
>gi|223713555|gb|ACDM01000043.1| GENE    49     53456  -     55237    225    593 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 346     565     135     355     398 91  35 2e-17
MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPLLISYFIDNMVAKNNLP
LKVVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSEFDTQP
VGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAMFSLDWRMALVAIMIFPVVLV
VMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQQFRQQARFGERMGEASRSHYMA
RMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIE
LTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGTIEVDNVSFAYRDDNLVLKNI
NLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMV
QQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVG
QKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVD
ADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAGEELAASVREEESLSA
>gi|223713555|gb|ACDM01000043.1| GENE    50     55230  -     57002   1658    590 aa, chain - ## HITS:1  COG:mdlA KEGG:ns NR:ns ## COG: mdlA COG1132 # Protein_GI_number: 16128433 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Escherichia coli K12 # 1     590       1     590     590    1174  100.0  0
MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVDGVTEQHFTTGQILMWI
ATMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSRQHPEFYLRHRTGDLMARA
TNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQLTLFSLLPMPVMAIMIKRNGD
ALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARI
DARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQLTSFMMYLGLMIWPMLALAWMFNI
VERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGELDVNIHQFTYPQTDHPALENVNFALK
PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF
LFSDTVANNIALGCPNATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR
ISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRLSALTEASEI
IVMQHGHIAQRGNHDVLAQQSGWYRDMYRYQQLEAALDDAPENREEAVDA
>gi|223713555|gb|ACDM01000043.1| GENE    51     57032  -     57490    387    152 aa, chain - ## HITS:1  COG:ybaO KEGG:ns NR:ns ## COG: ybaO COG1522 # Protein_GI_number: 16128432 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     152      30     181     181     308  100.0  2e-84
MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI
GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF
YKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
>gi|223713555|gb|ACDM01000043.1| GENE    52     57643  -     58461    700    272 aa, chain - ## HITS:1  COG:cof KEGG:ns NR:ns ## COG: cof COG0561 # Protein_GI_number: 16128431 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1     272       5     276     276     560  100.0  1e-159
MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHALEMQHILGALSLDA
YLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASMHIFNDDGWFTGKEIPALL
QAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQIQLYEALGERAHLCFSATDCL
EVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDREMLVSVGSGFIMGNAMPQLRAEL
PHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE
>gi|223713555|gb|ACDM01000043.1| GENE    53     58561  -     60261    995    566 aa, chain + ## HITS:1  COG:ybaE KEGG:ns NR:ns ## COG: ybaE COG4533 # Protein_GI_number: 16128430 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli K12 # 1     566       1     566     566    1107  100.0  0
MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSG
RGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDT
PTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGL
RWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHR
PDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYW
ITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARK
VISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHT
MAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDP
LWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAP
PGVNGVRLTPRGWFEFTEAWLPAPSQ
>gi|223713555|gb|ACDM01000043.1| GENE    54     60326  -     61021    694    231 aa, chain + ## HITS:1  COG:ybaX KEGG:ns NR:ns ## COG: ybaX COG0603 # Protein_GI_number: 16128429 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Escherichia coli K12 # 1     231       1     231     231     485  100.0  1e-137
MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKV
LDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNILFLTLAAIYAYQVKAEAVI
TGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWALADYYGKLDL
VRNETLTCYNGFKGDGCGHCAACNLRANGLNHYLADKPTVMAAMKQKTGLR
>gi|223713555|gb|ACDM01000043.1| GENE    55     61073  -     61471    371    132 aa, chain - ## HITS:1  COG:ybaW KEGG:ns NR:ns ## COG: ybaW COG0824 # Protein_GI_number: 16128428 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Escherichia coli K12 # 1     132       1     132     132     251  100.0  3e-67
MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMTAHNIAFVVVNININY
RRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALALE
GELREKLEQMVK
>gi|223713555|gb|ACDM01000043.1| GENE    56     61565  -     61936    561    123 aa, chain - ## HITS:1  COG:ybaV KEGG:ns NR:ns ## COG: ybaV COG1555 # Protein_GI_number: 16128427 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Escherichia coli K12 # 1     123       1     123     123     179  100.0  7e-46
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT
RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV
LTL
>gi|223713555|gb|ACDM01000043.1| GENE    57     62087  -     63958   2299    623 aa, chain - ## HITS:1  COG:ybaU KEGG:ns NR:ns ## COG: ybaU COG0760 # Protein_GI_number: 16128426 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli K12 # 1     623       1     623     623    1106  100.0  0
MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFN
SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA
IFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGET
DELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDA
ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK
EKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAK
VKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS
KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA
DVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPI
SQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIV
FEALMSNLRKEAKIKIGDALEQQ
>gi|223713555|gb|ACDM01000043.1| GENE    58     64150  -     64422    443     90 aa, chain - ## HITS:1  COG:YPO3154 KEGG:ns NR:ns ## COG: YPO3154 COG0776 # Protein_GI_number: 16123316 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Yersinia pestis # 1      90       1      90      90     126   92.0  1e-29
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG
RNPQTGKEITIAAAKVPSFRAGKALKDAVN
>gi|223713555|gb|ACDM01000043.1| GENE    59     64631  -     66985   3077    784 aa, chain - ## HITS:1  COG:lon KEGG:ns NR:ns ## COG: lon COG0466 # Protein_GI_number: 16128424 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Escherichia coli K12 # 1     784       1     784     784    1482  100.0  0
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEAST
DEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESP
TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADK
QSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE
LGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQ
VPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV
GKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLF
LLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP
LLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG
VRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTG
LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYE
KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLK
EKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQV
VTAK
>gi|223713555|gb|ACDM01000043.1| GENE    60     67173  -     68447    238    424 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 159     386     250     432     466 96  31 7e-19
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE
RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP
TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI
VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL
IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK
KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ
ASGE
>gi|223713555|gb|ACDM01000043.1| GENE    61     68573  -     69196    643    207 aa, chain - ## HITS:1  COG:ECs0491 KEGG:ns NR:ns ## COG: ECs0491 COG0740 # Protein_GI_number: 15829745 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Escherichia coli O157:H7 # 1     207       1     207     207     417  100.0  1e-117
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQ
MLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG
AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER
DTERDRFLSAPEAVEYGLVDSILTHRN
>gi|223713555|gb|ACDM01000043.1| GENE    62     69442  -     70740   1769    432 aa, chain - ## HITS:1  COG:ECs0490 KEGG:ns NR:ns ## COG: ECs0490 COG0544 # Protein_GI_number: 15829744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Escherichia coli O157:H7 # 1     432       1     432     432     738  100.0  0
MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA
SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGL
EAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGG
KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKV
EERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDI
DVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNEL
KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEK
ETTFNELMNQQA
>gi|223713555|gb|ACDM01000043.1| GENE    63     71084  -     71401    273    105 aa, chain - ## HITS:1  COG:ECs0489 KEGG:ns NR:ns ## COG: ECs0489 COG0271 # Protein_GI_number: 15829743 # Func_class: T Signal transduction mechanisms # Function: Stress-induced morphogen (activity unknown) # Organism: Escherichia coli O157:H7 # 1     105      12     116     116     204  100.0  3e-53
MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMI
YSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAGSIA
>gi|223713555|gb|ACDM01000043.1| GENE    64     71706  -     72284    680    192 aa, chain + ## HITS:1  COG:yajG KEGG:ns NR:ns ## COG: yajG COG3056 # Protein_GI_number: 16128419 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1     192      35     226     226     355  100.0  2e-98
MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAK
VTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVR
YNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQD
TSIHEFIKQNAR
>gi|223713555|gb|ACDM01000043.1| GENE    65     72328  -     73803   1373    491 aa, chain + ## HITS:1  COG:ECs0487 KEGG:ns NR:ns ## COG: ECs0487 COG0477 # Protein_GI_number: 15829741 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     491       1     491     491     843  100.0  0
MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYV
FKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFC
SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLM
AALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF
AMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGILQG
ASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLSAL
SAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAAVPGLILLLVCRQTLEYTRVNDNFISRTA
YPAGYAFAMWTLAAGVSLLAVWLLLLTMDALDLTHFSFLPALLEVGVLVALSGVVLGGLL
DYLALRKTHLT
>gi|223713555|gb|ACDM01000043.1| GENE    66     74263  -     75210    868    315 aa, chain + ## HITS:1  COG:cyoA KEGG:ns NR:ns ## COG: cyoA COG1622 # Protein_GI_number: 16128417 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Escherichia coli K12 # 1     315       1     315     315     629  100.0  1e-180
MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAIL
MAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL
AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLG
SQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQ
SPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAH
EGMEGMDMSHAESAH
>gi|223713555|gb|ACDM01000043.1| GENE    67     75232  -     77223   2113    663 aa, chain + ## HITS:1  COG:ECs0485 KEGG:ns NR:ns ## COG: ECs0485 COG0843 # Protein_GI_number: 15829739 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Escherichia coli O157:H7 # 1     663       1     663     663    1241  100.0  0
MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIM
YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI
GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIE
YSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLII
ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSE
IAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTG
VKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF
HNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMT
RRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLE
WATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFST
IFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLK
NGN
>gi|223713555|gb|ACDM01000043.1| GENE    68     77213  -     77827    683    204 aa, chain + ## HITS:1  COG:cyoC KEGG:ns NR:ns ## COG: cyoC COG1845 # Protein_GI_number: 16128415 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Escherichia coli K12 # 1     204       1     204     204     368  100.0  1e-102
MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTG
KDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEF
HHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCL
SLFWHFLDVVWICVFTVVYLMGAM
>gi|223713555|gb|ACDM01000043.1| GENE    69     77827  -     78156    293    109 aa, chain + ## HITS:1  COG:ECs0483 KEGG:ns NR:ns ## COG: ECs0483 COG3125 # Protein_GI_number: 15829737 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Escherichia coli O157:H7 # 1     109       1     109     109     159  100.0  8e-40
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLV
HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
>gi|223713555|gb|ACDM01000043.1| GENE    70     78171  -     79058    878    295 aa, chain + ## HITS:1  COG:ECs0482 KEGG:ns NR:ns ## COG: ECs0482 COG0109 # Protein_GI_number: 15829736 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Escherichia coli O157:H7 # 1     295       2     296     296     524  100.0  1e-148
MFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYID
RDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYV
GVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDSGAAILLAIFSLWQMPHSYAIA
IFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLSLGGYAGYKYLVVAAAVS
VWWLGMALRGYKVADDRIWARKLFGFSIIAITALSVMMSVDFMVPDSHTLLAAVW
>gi|223713555|gb|ACDM01000043.1| GENE    71     79207  -     80571   1544    454 aa, chain + ## HITS:1  COG:yajR KEGG:ns NR:ns ## COG: yajR COG0477 # Protein_GI_number: 16128412 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     454       3     456     456     817  100.0  0
MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEALIGIAIGIYGLT
QAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIWGIILGRALQGSGAIAAAV
MALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIA
LTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVALPGQLA
DAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQT
QFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGW
INGMFDGQGVFLAGAMLAAVWLTVASTMKEPPYVSSLRIEIPANIAANEALKVRLLETEG
IKEVLIAEEEHSAYVKIDSKVTNRFEIEQAIRQA
>gi|223713555|gb|ACDM01000043.1| GENE    72     80699  -     81190    707    163 aa, chain - ## HITS:1  COG:ECs0480 KEGG:ns NR:ns ## COG: ECs0480 COG1666 # Protein_GI_number: 15829734 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     163       7     169     169     280  100.0  7e-76
MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDASKTIKVLSESDFQVNQ
LLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGIESATQKKIVKMIKDSKLK
VQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKNFRD
>gi|223713555|gb|ACDM01000043.1| GENE    73     81358  -     82269    792    303 aa, chain + ## HITS:1  COG:apbA KEGG:ns NR:ns ## COG: apbA COG1893 # Protein_GI_number: 16128410 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Escherichia coli K12 # 1     303       1     303     303     623  100.0  1e-178
MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF
LATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTH
AARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVN
CVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAE
NISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYERIGTGLP
RPW
>gi|223713555|gb|ACDM01000043.1| GENE    74     82232  -     82822    801    196 aa, chain + ## HITS:1  COG:thiJ KEGG:ns NR:ns ## COG: thiJ COG0693 # Protein_GI_number: 16128409 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli K12 # 1     196       3     198     198     381  100.0  1e-106
MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLV
EVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFP
IGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHE
VASQLVMAAGIYNYYE
>gi|223713555|gb|ACDM01000043.1| GENE    75     82876  -     84324   1710    482 aa, chain - ## HITS:1  COG:ECs0477_1 KEGG:ns NR:ns ## COG: ECs0477_1 COG0301 # Protein_GI_number: 15829731 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Escherichia coli O157:H7 # 1     402       1     402     402     793   99.0  0
MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQR
LAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFS
SIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDV
LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFV
AINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN
LRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKI
EAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQE
DKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVY
RP
>gi|223713555|gb|ACDM01000043.1| GENE    76     84530  -     84772    349     80 aa, chain + ## HITS:1  COG:ECs0476 KEGG:ns NR:ns ## COG: ECs0476 COG1722 # Protein_GI_number: 15829730 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Escherichia coli O157:H7 # 1      80       1      80      80     112  100.0  1e-25
MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQLARQGQAKLQQAEQRV
QILLSDNEDASLTPFTPDNE
>gi|223713555|gb|ACDM01000043.1| GENE    77     84772  -     85671    899    299 aa, chain + ## HITS:1  COG:ispA KEGG:ns NR:ns ## COG: ispA COG0142 # Protein_GI_number: 16128406 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Escherichia coli K12 # 1     299       1     299     299     535  100.0  1e-152
MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFG
VSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL
AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRH
KTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG
ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK
>gi|223713555|gb|ACDM01000043.1| GENE    78     85696  -     87558   2039    620 aa, chain + ## HITS:1  COG:dxs KEGG:ns NR:ns ## COG: dxs COG1154 # Protein_GI_number: 16128405 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Escherichia coli K12 # 1     620       1     620     620    1269  100.0  0
MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELT
VALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSV
GHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILND
NEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPG
TLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKKGRGYEPAEKDPITFHA
VPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFP
DRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDR
AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGN
AVGVELTPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVAESLNATLVDMRFVKPLDE
ALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEM
RAELGLDAAGMEAKIKAWLA
>gi|223713555|gb|ACDM01000043.1| GENE    79     87738  -     88712    969    324 aa, chain + ## HITS:1  COG:yajO KEGG:ns NR:ns ## COG: yajO COG0667 # Protein_GI_number: 16128404 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     324      25     348     348     659  100.0  0
MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANS
YSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDY
VDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFV
SMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGRLTRPWGETTARLVSDEVGKNLY
KESDENDAQIAERLTGVSEELGATRAQVALAWLLSKPGIAAPIIGTSREEQLDELLNAVD
ITLKPEQIAELETPYKPHPVVGFK
>gi|223713555|gb|ACDM01000043.1| GENE    80     88766  -     89284    612    172 aa, chain - ## HITS:1  COG:pgpA KEGG:ns NR:ns ## COG: pgpA COG1267 # Protein_GI_number: 16128403 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Escherichia coli K12 # 1     172       1     172     172     313  100.0  8e-86
MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLY
SLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIF
RILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS
>gi|223713555|gb|ACDM01000043.1| GENE    81     89262  -     90239   1087    325 aa, chain - ## HITS:1  COG:thiL KEGG:ns NR:ns ## COG: thiL COG0611 # Protein_GI_number: 16128402 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Escherichia coli K12 # 1     325       1     325     325     641  100.0  0
MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDID
PADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLESFSDSLFDLLNYYDMQLIG
GDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGTPGDSAAGLAILQNRLQVADA
KDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLISDLGHIVKASDCGARIDLALLP
FSDALSRHVEPEQALRWALSGGEDYELCFTVPELNRGALDVALGHLGVPFTCIGQMTADI
EGLCFIRDGEPVTLDWKGYDHFATP
>gi|223713555|gb|ACDM01000043.1| GENE    82     90317  -     90736    535    139 aa, chain - ## HITS:1  COG:ECs0469 KEGG:ns NR:ns ## COG: ECs0469 COG0781 # Protein_GI_number: 15829723 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Escherichia coli O157:H7 # 1     139       1     139     139     245  100.0  2e-65
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA
YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH
KFVNGVLDKAAPVIRPNKK
>gi|223713555|gb|ACDM01000043.1| GENE    83     90756  -     91226    617    156 aa, chain - ## HITS:1  COG:ECs0468 KEGG:ns NR:ns ## COG: ECs0468 COG0054 # Protein_GI_number: 15829722 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     258  100.0  4e-69
MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYEL
PLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSEIPVAFGVLTTE
SIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA
>gi|223713555|gb|ACDM01000043.1| GENE    84     91315  -     92418    939    367 aa, chain - ## HITS:1  COG:ribD_2 KEGG:ns NR:ns ## COG: ribD_2 COG1985 # Protein_GI_number: 16128399 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Escherichia coli K12 # 144     367       1     224     224     443  100.0  1e-124
MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG
EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGI
DVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDV
QLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTP
VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA
GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV
CLHLVGA
>gi|223713555|gb|ACDM01000043.1| GENE    85     92422  -     92871    447    149 aa, chain - ## HITS:1  COG:ECs0466 KEGG:ns NR:ns ## COG: ECs0466 COG1327 # Protein_GI_number: 15829720 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Escherichia coli O157:H7 # 1     149       1     149     149     272  100.0  1e-73
MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP
FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD
KVAYIRFASVYRSFEDIKEFGEEIARLED
>gi|223713555|gb|ACDM01000043.1| GENE    86     93022  -     93561    398    179 aa, chain + ## HITS:1  COG:no KEGG:ECs0465 NR:ns ## KEGG: ECs0465 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157J # Pathway: not_defined # 1     179       1     179     179     309   98.0  4e-83
MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKS
SSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEY
GQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ
>gi|223713555|gb|ACDM01000043.1| GENE    87     93860  -     94744   1201    294 aa, chain + ## HITS:1  COG:Ztsx KEGG:ns NR:ns ## COG: Ztsx COG3248 # Protein_GI_number: 15800140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Nucleoside-binding outer membrane protein # Organism: Escherichia coli O157:H7 EDL933 # 1     294       1     294     294     523   99.0  1e-148
MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE
YEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGP
FKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANEN
EWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSH
ILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNF
>gi|223713555|gb|ACDM01000043.1| GENE    88     94921  -     95268    471    115 aa, chain - ## HITS:1  COG:no KEGG:c0520 NR:ns ## KEGG: c0520 # Name: yajD # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     115      24     138     138     236  100.0  2e-61
MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSN
WELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
>gi|223713555|gb|ACDM01000043.1| GENE    89     95397  -     96368   1100    323 aa, chain - ## HITS:1  COG:ECs0460 KEGG:ns NR:ns ## COG: ECs0460 COG0341 # Protein_GI_number: 15829714 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Escherichia coli O157:H7 # 1     323       1     323     323     613  100.0  1e-175
MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEI
TLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINE
STNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHD
VIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
LTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLG
MKREHMLQQKVEKEGADQPSILP
>gi|223713555|gb|ACDM01000043.1| GENE    90     96379  -     98193   2041    604 aa, chain - ## HITS:1  COG:ECs0459 KEGG:ns NR:ns ## COG: ECs0459 COG0342 # Protein_GI_number: 15829713 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Escherichia coli O157:H7 # 1     604      12     615     615    1113  100.0  0
MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEE
GAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGV
HFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIA
YLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ
GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQ
PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE
YKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA
PIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIV
GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFS
SIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVK
KLSI
>gi|223713555|gb|ACDM01000043.1| GENE    91     98254  -     98586    517    110 aa, chain - ## HITS:1  COG:ECs0458 KEGG:ns NR:ns ## COG: ECs0458 COG1862 # Protein_GI_number: 15829712 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Escherichia coli O157:H7 # 1     110       1     110     110     201  100.0  4e-52
MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGD
EVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL
>gi|223713555|gb|ACDM01000043.1| GENE    92     98609  -     99736   1048    375 aa, chain - ## HITS:1  COG:ECs0457 KEGG:ns NR:ns ## COG: ECs0457 COG0343 # Protein_GI_number: 15829711 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Escherichia coli O157:H7 # 1     375       1     375     375     798  100.0  0
MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH
LWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPI
FLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRERFDSLGNKN
ALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKADMHRILEHVCPQIPADKP
RYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKYKSDTGPLDP
ECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTD
FYQRQGREVPPLNVD
>gi|223713555|gb|ACDM01000043.1| GENE    93     99792  -    100862   1171    356 aa, chain - ## HITS:1  COG:ECs0456 KEGG:ns NR:ns ## COG: ECs0456 COG0809 # Protein_GI_number: 15829710 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Escherichia coli O157:H7 # 1     356       1     356     356     706  100.0  0
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNN
TRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMT
ARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPT
AGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAV
LAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNF
HLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>gi|223713555|gb|ACDM01000043.1| GENE    94    100955  -    101536    478    193 aa, chain + ## HITS:1  COG:yajB KEGG:ns NR:ns ## COG: yajB COG3124 # Protein_GI_number: 16128389 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     193       1     193     193     352  100.0  2e-97
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE
AREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRF
INLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQF
YPRMMAQASRKAL
>gi|223713555|gb|ACDM01000043.1| GENE    95    101541  -    103355   1669    604 aa, chain - ## HITS:1  COG:malZ KEGG:ns NR:ns ## COG: malZ COG0366 # Protein_GI_number: 16128388 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1     604       2     605     605    1249   99.0  0
MLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPG
VTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWA
ADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLD
GISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLG
MRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPK
LDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEA
AKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFLLWGFLANTDISYDPQQIDAQT
CMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIY
YGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDN
VVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISAT
VWMN
>gi|223713555|gb|ACDM01000043.1| GENE    96    103514  -    104887   1577    457 aa, chain - ## HITS:1  COG:ECs0452 KEGG:ns NR:ns ## COG: ECs0452 COG1113 # Protein_GI_number: 15829706 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1     457       1     457     457     783  100.0  0
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMR
ALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT
VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQ
PTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVP
MRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINS
DVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVI
ASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIG
YHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>gi|223713555|gb|ACDM01000043.1| GENE    97    104963  -    106282   1499    439 aa, chain - ## HITS:1  COG:ECs0451 KEGG:ns NR:ns ## COG: ECs0451 COG1114 # Protein_GI_number: 15829705 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Escherichia coli O157:H7 # 1     439       1     439     439     741  100.0  0
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV
VALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSAL
PLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEA
YQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLT
LLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTC
ACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFT
RSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMV
VLAIIWDRAAGRQVTSSAH
>gi|223713555|gb|ACDM01000043.1| GENE    98    106689  -    107984   1104    431 aa, chain - ## HITS:1  COG:phoR KEGG:ns NR:ns ## COG: phoR COG0642 # Protein_GI_number: 16128385 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     431       1     431     431     840  100.0  0
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVD
RSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGI
FWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVM
PYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVRE
KALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQT
FTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPG
IAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFV
IPERLIAKNSD
>gi|223713555|gb|ACDM01000043.1| GENE    99    108042  -    108731    657    229 aa, chain - ## HITS:1  COG:ECs0449 KEGG:ns NR:ns ## COG: ECs0449 COG0745 # Protein_GI_number: 15829703 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     229       1     229     229     449  100.0  1e-126
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS
GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM
RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL
NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>gi|223713555|gb|ACDM01000043.1| GENE   100    108921  -    110123    967    400 aa, chain + ## HITS:1  COG:ECs0448 KEGG:ns NR:ns ## COG: ECs0448 COG0420 # Protein_GI_number: 15829702 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Escherichia coli O157:H7 # 1     400       1     400     400     803  100.0  0
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR
TLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDG
TPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPII
ATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGS
PIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVS
QEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSEL
SVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>gi|223713555|gb|ACDM01000043.1| GENE   101    110120  -    113266   2982   1048 aa, chain + ## HITS:1  COG:sbcC KEGG:ns NR:ns ## COG: sbcC COG0419 # Protein_GI_number: 16128382 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Escherichia coli K12 # 1    1048       1    1048    1048    1499  100.0  0
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA
DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQ
QEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA
EHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQ
WNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAE
QRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADV
KTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVK
KLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQP
WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQE
DEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWR
QVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLT
QLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLR
ENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQ
GLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVS
LALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM
KERIPVQIKVKKINGLGYSKLESTFAVK
>gi|223713555|gb|ACDM01000043.1| GENE   102    113308  -    114576    958    422 aa, chain + ## HITS:1  COG:araJ KEGG:ns NR:ns ## COG: araJ COG2814 # Protein_GI_number: 16128381 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 29     422       1     394     394     632  100.0  0
MALLVVILQAITLLATVIGSRSGGCDGGMKKVILSLALGTFGLGMAEFGIMGVLTELAHN
VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYL
MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ
EFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGN
AGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTD
FIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIA
FNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
LG
>gi|223713555|gb|ACDM01000043.1| GENE   103    114719  -    115627    292    302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 3     298       6     316     319 117  31 4e-25
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTV
GMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAA
GAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGK
QGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVV
NILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWP
QE
>gi|223713555|gb|ACDM01000043.1| GENE   104    115752  -    116663   1187    303 aa, chain + ## HITS:1  COG:rdgC KEGG:ns NR:ns ## COG: rdgC COG2974 # Protein_GI_number: 16128378 # Func_class: L Replication, recombination and repair # Function: DNA recombination-dependent growth factor C # Organism: Escherichia coli K12 # 1     303       1     303     303     572  100.0  1e-163
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA
NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF
SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV
RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI
QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE
AQR
>gi|223713555|gb|ACDM01000043.1| GENE   105    116821  -    117024    131     67 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_0466 NR:ns ## KEGG: ECH74115_0466 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      67     655     721     721     114   89.0  1e-24
MTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEAR
HRLEEKQ
>gi|223713555|gb|ACDM01000043.1| GENE   106    117310  -    117594    287     94 aa, chain - ## HITS:1  COG:ECs0441 KEGG:ns NR:ns ## COG: ECs0441 COG3123 # Protein_GI_number: 15829695 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      94       1      94      94     175  100.0  2e-44
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDAT
DWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>gi|223713555|gb|ACDM01000043.1| GENE   107    117666  -    118343    646    225 aa, chain - ## HITS:1  COG:no KEGG:S0334 NR:ns ## KEGG: S0334 # Name: aroM # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1     225       1     225     225     401  100.0  1e-111
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILT
LLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILP
PLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLA
KGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>gi|223713555|gb|ACDM01000043.1| GENE   108    118601  -    118792    229     63 aa, chain - ## HITS:1  COG:no KEGG:LF82_2523 NR:ns ## KEGG: LF82_2523 # Name: yaiA # Def: uncharacterized protein YaiA # Organism: E.coli_LF82 # Pathway: not_defined # 1      63       1      63      63      90  100.0  2e-17
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDP
DKE
>gi|223713555|gb|ACDM01000043.1| GENE   109    118842  -    119366    339    174 aa, chain - ## HITS:1  COG:ECs0438 KEGG:ns NR:ns ## COG: ECs0438 COG0703 # Protein_GI_number: 15829692 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Escherichia coli O157:H7 # 1     174       1     174     174     333   99.0  1e-91
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRAR
ETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVFYLCAPVSVLVNRLQAAPEEDLR
PTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>gi|223713555|gb|ACDM01000043.1| GENE   110    119549  -    120007    397    152 aa, chain - ## HITS:1  COG:ECs0436 KEGG:ns NR:ns ## COG: ECs0436 COG1671 # Protein_GI_number: 15829691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     152      41     192     192     291  100.0  2e-79
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNE
IVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGI
QTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>gi|223713555|gb|ACDM01000043.1| GENE   111    120127  -    120936    903    269 aa, chain + ## HITS:1  COG:proC KEGG:ns NR:ns ## COG: proC COG0345 # Protein_GI_number: 16128371 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Escherichia coli K12 # 1     269       1     269     269     489  100.0  1e-138
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEV
AQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMP
NTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVF
MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAV
RVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>gi|223713555|gb|ACDM01000043.1| GENE   112    120953  -    122053    674    366 aa, chain - ## HITS:1  COG:yaiC_2 KEGG:ns NR:ns ## COG: yaiC_2 COG2199 # Protein_GI_number: 16128370 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 196     366       1     171     171     356  100.0  3e-98
MNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPP
PGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTA
MLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYP
LLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLL
IIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESA
ITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRN
RTEVAA
>gi|223713555|gb|ACDM01000043.1| GENE   113    122170  -    122490    239    106 aa, chain - ## HITS:1  COG:no KEGG:APECO1_1624 NR:ns ## KEGG: APECO1_1624 # Name: psiF # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     106       7     112     112     161  100.0  5e-39
MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN
SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKKAA
>gi|223713555|gb|ACDM01000043.1| GENE   114    122609  -    124024   1301    471 aa, chain - ## HITS:1  COG:phoA KEGG:ns NR:ns ## COG: phoA COG1785 # Protein_GI_number: 16128368 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Escherichia coli K12 # 1     471      24     494     494     865   99.0  0
MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLS
DKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDY
VTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAA
LVAHVASRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAG
EWQGKTLREQAQALGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGN
IDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQ
IGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVM
VMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
>gi|223713555|gb|ACDM01000043.1| GENE   115    124125  -    124385    266     86 aa, chain - ## HITS:1  COG:no KEGG:SSON_0357 NR:ns ## KEGG: SSON_0357 # Name: yaiB # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      86       1      86      86     132  100.0  5e-30
MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK
PDASIPDDDTELLRDYVKKLLKHPRQ
>gi|223713555|gb|ACDM01000043.1| GENE   116    124848  -    125942   1103    364 aa, chain + ## HITS:1  COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 1     364       1     364     364     728  100.0  0
MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN
ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML
RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL
PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ
ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR
VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL
KTTM
>gi|223713555|gb|ACDM01000043.1| GENE   117    125966  -    126178    358     70 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C0397 NR:ns ## KEGG: UTI89_C0397 # Name: yaiZ # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      70      45     114     114     138  100.0  5e-32
MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIR
RRDEETENAQ
>gi|223713555|gb|ACDM01000043.1| GENE   118    126438  -    126746    318    102 aa, chain + ## HITS:1  COG:no KEGG:APECO1_1629 NR:ns ## KEGG: APECO1_1629 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     102       1     102     102     200  100.0  1e-50
MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQE
TGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
>gi|223713555|gb|ACDM01000043.1| GENE   119    126805  -    127899   1048    364 aa, chain - ## HITS:1  COG:no KEGG:JW0369 NR:ns ## KEGG: JW0369 # Name: yaiW # Def: predicted DNA-binding transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1     364       1     364     364     687  100.0  0
MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDL
ATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLV
HTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVS
IAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYA
SRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKG
DSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRAR
CMKQ
>gi|223713555|gb|ACDM01000043.1| GENE   120    127912  -    129132   1310    406 aa, chain - ## HITS:1  COG:ECs0427 KEGG:ns NR:ns ## COG: ECs0427 COG1133 # Protein_GI_number: 15829681 # Func_class: I Lipid transport and metabolism # Function: ABC-type long-chain fatty acid transport system, fused permease and ATPase components # Organism: Escherichia coli O157:H7 # 1     406       1     406     406     757  100.0  0
MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIF
YAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQ
TALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQ
LRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIP
YGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRE
LFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG
QVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS
>gi|223713555|gb|ACDM01000043.1| GENE   121    129152  -    129346    103     64 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_0372 NR:ns ## KEGG: ECIAI1_0372 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      64       1      64      64     119  100.0  3e-26
MPAFVILRVLIRLCKQSLVCEIRRNNSYGQAGELSALLWVTMGGFIWLTLCSGHAVNTQQ
LLKR
>gi|223713555|gb|ACDM01000043.1| GENE   122    129484  -    130641   1058    385 aa, chain + ## HITS:1  COG:ECs0426 KEGG:ns NR:ns ## COG: ECs0426 COG1680 # Protein_GI_number: 15829680 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli O157:H7 # 1     385       1     385     385     760  100.0  0
MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQ
RVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA
RVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQ
AAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGAS
PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMD
VPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRF
KNMSDGINDLVTELSGNKPLVIPAS
>gi|223713555|gb|ACDM01000043.1| GENE   123    130642  -    131265    347    207 aa, chain - ## HITS:1  COG:no KEGG:SSON_0350 NR:ns ## KEGG: SSON_0350 # Name: yaiV # Def: putative DNA-binding transcriptional regulator # Organism: S.sonnei # Pathway: not_defined # 1     207      16     222     222     418  100.0  1e-116
MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENV
LIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLA
WQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEV
LAALRKGGYIEMNKGKLVAINRLPSEY
>gi|223713555|gb|ACDM01000043.1| GENE   124    131353  -    134259   2731    968 aa, chain - ## HITS:1  COG:yaiU KEGG:ns NR:ns ## COG: yaiU COG3468 # Protein_GI_number: 16128359 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 502     968       1     467     467     731   99.0  0
MHSWKKKLVVSQLALACTLAITSQANAANYDTWTYIDNPVTALDWDHMDKAGTVDGNYVN
YSGFVYYNNTNGDFDQSFNGDTVNGTISTYYLNHDYADSTANQLDISNSVIHGSITSMLP
GGYYDRFDADGNNLGGYDFYTDAVVDTHWRDGDVFTLNIANTTIDDDYEALYFTDSYKDG
DVTKHTNETFDTSEGVAVNLDVESNINISNNSRVAGIALSQGNTYNETYTTESHTWDNNI
SVKDSTVTSGSNYILDSNTYGKTGHFGNSDEPSDYAGPGDVAMSFTASGSDYAMKNNVFL
SNSTLMGDVAFTSTWNSNFDPNGHDSNGDGVKDTNGGWTDDSLNVDELNLTLDNGSKWVG
QAIYNVAETSAMYDVATNSLTPDATYENNDWKRVVDDKVFQSGVFNVALNNGSEWDTTGR
SIVDTLTVNNGSQVNVSESKLTSDTIDLTNGSSLNIGEDGYVDTDHLTINSYSTVALTES
TGWGADYNLYANTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHNGNVVSGVFDI
HSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNGTELDNSSVDNVV
AATGNYKVRIDNATGAGAIADYKDKEIIYVNDVNSNATFSAANKADLGAYTYQAEQRGNT
VVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFN
GDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIY
SSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGY
VTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLA
YVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSA
NVGVKYTW
>gi|223713555|gb|ACDM01000043.1| GENE   125    134217  -    134408    110     63 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MLIVILQVSFSRSAFVIPPQGRNKLIHQLSMHRKHIMFRANDYAALQTNGSIILSPKSEC
GHI
>gi|223713555|gb|ACDM01000043.1| GENE   126    134458  -    134613     59     51 aa, chain + ## HITS:1  COG:no KEGG:ECDH10B_0326 NR:ns ## KEGG: ECDH10B_0326 # Name: ykiB # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1      51      39      89      89      77  100.0  1e-13
MLQIILFLKHTHNKYHKHKPDKYPMNMQQSFNYSIYSSATKLQKIITNSYK
>gi|223713555|gb|ACDM01000043.1| GENE   127    134783  -    135757   1129    324 aa, chain + ## HITS:1  COG:ECs0423 KEGG:ns NR:ns ## COG: ECs0423 COG0113 # Protein_GI_number: 15829677 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Escherichia coli O157:H7 # 1     324      12     335     335     620  100.0  1e-178
MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH
LAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTC
FCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALD
AAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQG
ADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGS
IKRAGADLIFSYFALDLAEKKILR
>gi|223713555|gb|ACDM01000043.1| GENE   128    135864  -    136715    845    283 aa, chain - ## HITS:1  COG:tauD KEGG:ns NR:ns ## COG: tauD COG2175 # Protein_GI_number: 16128353 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Probable taurine catabolism dioxygenase # Organism: Escherichia coli K12 # 1     283       1     283     283     564  100.0  1e-161
MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQRAL
AQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELP
STGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAK
NPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRW
QPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRAG
>gi|223713555|gb|ACDM01000043.1| GENE   129    136712  -    137539   1102    275 aa, chain - ## HITS:1  COG:tauC KEGG:ns NR:ns ## COG: tauC COG0600 # Protein_GI_number: 16128352 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1     275       1     275     275     431  100.0  1e-120
MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVATLQLISPLFLPPPQQVLE
KLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFGIPVGIAMGLSPTVRGILDPIIE
LYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSVQQVRIRAAQSLG
ASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD
VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ
>gi|223713555|gb|ACDM01000043.1| GENE   130    137536  -    138303    267    255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     205       1     215     245 107  31 3e-22
MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQL
AGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEG
AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGK
QVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFARRFVAGESSRSIKSDPQFIAMR
EYVLSRVFEQREAFS
>gi|223713555|gb|ACDM01000043.1| GENE   131    138316  -    139278   1168    320 aa, chain - ## HITS:1  COG:tauA KEGG:ns NR:ns ## COG: tauA COG4521 # Protein_GI_number: 16128350 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type taurine transport system, periplasmic component # Organism: Escherichia coli K12 # 1     320      20     339     339     587  100.0  1e-167
MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDS
GASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDL
IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAV
NALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANPD
VWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLKEQ
GKVPAVANDYSQYVTSRFVQ
>gi|223713555|gb|ACDM01000043.1| GENE   132    139232  -    139456    131     74 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_0388 NR:ns ## KEGG: EcE24377A_0388 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1      74       1      74      74     132   98.0  4e-30
MNASAARSVLRDEIAMIVCSPVLLWEQYSGIKTFIKRISRYRTDDFILSKKTAKERLNMQ
LLRSNNWENYYTSF
>gi|223713555|gb|ACDM01000043.1| GENE   133    139894  -    140565    400    223 aa, chain + ## HITS:1  COG:yaiS KEGG:ns NR:ns ## COG: yaiS COG2120 # Protein_GI_number: 16128349 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Escherichia coli K12 # 50     185       1     136     136     274   99.0  8e-74
MDKVLDSALLSSANKRKGILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTD
GIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISALEDIIKNQIPSDVEIMRVY
TMHDADRHQDHLAVYQASMVACRTIPQILGYETPSTWLSFMPQVFESVKEEYFTVKLAAL
KKHKSQERRDYMRHDRLRAVAQFRGQQVNSDLGEGFVIHKMIL
>gi|223713555|gb|ACDM01000043.1| GENE   134    140575  -    141771    708    398 aa, chain + ## HITS:1  COG:yaiP KEGG:ns NR:ns ## COG: yaiP COG1215 # Protein_GI_number: 16128348 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1     398       1     398     398     802  100.0  0
MKTWIFICMSIAMLLWFLSTLRRKPSQKKGCIDAIIPAYNEGPCLAQSLDNLLRNPYFCR
VICVNDGSTDNTEAVMAEVKRKWGDRFVAVTQKNTGKGGALMNGLNYATCDQVFLSDADT
YVPPDQDGMGYMLAEIERGADAVGGIPSTALKGAGLLPHIRATVKLPMIVMKRTLQQLLG
GAPFIISGACGMFRTDVLRKFGFSDRTKVEDLDLTWTLVANGYRIRQANRCIVYPQECNS
PREEWRRWRRWIVGYAVCMRLHKRLLFSRFGIFSIFPMLLVVLYGVGIYLTTWFNEFITT
GPHGVVLAMFPLIWVGVVCVIGAFSAWFHRCWLLVPLAPLSVVYVLLAYAIWIIYGLIAF
FTGREPQRDKPTRYSALVEASTAYSQPSVTGTEKLSEA
>gi|223713555|gb|ACDM01000043.1| GENE   135    141620  -    142330    412    236 aa, chain + ## HITS:1  COG:b0359 KEGG:ns NR:ns ## COG: b0359 COG0110 # Protein_GI_number: 16128344 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 100     236      11     147     147     269  100.0  3e-72
MPSGLFMDLLPFLLDANLSATNPPAIPHWWKRQPLIPNLLSQELKNYLKLNVKEKNIQIA
DQVIIDETAGEVVIGANTRICHGAVIQGPVVIGANCLIGNYAFIRPGTIISNGVKIGFAT
EIKNAVIEAEATIGPQCFIADSVVANQAYLGAQVRTSNHRLDEQPVSVRTPEGIIATGCD
KLGCYIGQRSRLGVQVIILPGRIISPNTQLGPRVIVERNLPTGTYSLRQELIRTGD
>gi|223713555|gb|ACDM01000043.1| GENE   136    142332  -    143105    858    257 aa, chain + ## HITS:1  COG:no KEGG:JW0349 NR:ns ## KEGG: JW0349 # Name: yaiO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     257       1     257     257     484  100.0  1e-135
MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL
SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK
TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND
PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP
TDDFNGLQLAARLTWKF
>gi|223713555|gb|ACDM01000043.1| GENE   137    143293  -    143568    282     91 aa, chain + ## HITS:1  COG:ECs0412 KEGG:ns NR:ns ## COG: ECs0412 COG1937 # Protein_GI_number: 15829666 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      91       8      98      98     154  100.0  4e-38
MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEVLESH
IRETFDRNDCYSREVSQSVDDTIELVRAYLK
>gi|223713555|gb|ACDM01000043.1| GENE   138    143603  -    144712   1227    369 aa, chain + ## HITS:1  COG:ECs0411 KEGG:ns NR:ns ## COG: ECs0411 COG1062 # Protein_GI_number: 15829665 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Escherichia coli O157:H7 # 1     369       1     369     369     726   99.0  0
MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVL
GHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPD
GTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHN
TAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPND
YDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGAGQEISTRP
FQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEG
KSIRTVIRY
>gi|223713555|gb|ACDM01000043.1| GENE   139    144806  -    145639    603    277 aa, chain + ## HITS:1  COG:yaiM KEGG:ns NR:ns ## COG: yaiM COG0627 # Protein_GI_number: 16128340 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1     277       1     277     277     569   99.0  1e-162
MELIEKHVSFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANEKLPVLYWLSGLTCNEQNFI
TKSGMQRYAAEHNIIVVAPDTSPRGSHVADADRYDLGQGAGFYLNATQAPWNEHYKMYDY
IRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQVPWG
QQAFAAYLAENKDAWLDYDPVSLISQGQRVAEIMVDQGLSDDFYAEQLRTPNLEKICQEM
NIKTLIRYHEGYDHSYYFVSSFIGEHIAYHANKLNMR
>gi|223713555|gb|ACDM01000043.1| GENE   140    145863  -    146402    652    179 aa, chain - ## HITS:1  COG:yaiL KEGG:ns NR:ns ## COG: yaiL COG3122 # Protein_GI_number: 16128339 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     179      40     218     218     295  100.0  4e-80
MAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQ
KQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIA
RLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMW
>gi|223713555|gb|ACDM01000043.1| GENE   141    146504  -    147715   1063    403 aa, chain - ## HITS:1  COG:mhpT KEGG:ns NR:ns ## COG: mhpT COG0477 # Protein_GI_number: 16128338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 13     403      28     418     418     576  100.0  1e-164
MSTRTPSSSSSRLMLTIGLCFLVALMEGLDLQAAGIAAGGIAQAFALDKMQMGWIFSAGI
LGLLPGALVGGMLADRYGRKRILIGSVALFGLFSLATAIAWDFPSLVFARLMTGVGLGAA
LPNLIALTSEAAGPRFRGTAVSLMYCGVPIGAALAATLGFAGANLAWQTVFWVGGVVPLI
LVPLLMRWLPESAVFAGEKQSAPPLRALFAPETATATLLLWLCYFFTLLVVYMLINWLPL
LLVEQGFQPSQAAGVMFALQMGAASGTLMLGALMDKLRPVTMSLLIYSGMLASLLALGTV
SSFNGMLLAGFVAGLFATGGQSVLYALAPLFYSSQIRATGVGTAVAVGRLGAMSGPLLAG
KMLALGTGTVGVMAASAPGILVAGLAVFILMSRRSRIQPCADA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:02:27 2011
 Seq name: gi|223713554|gb|ACDM01000044.1| Escherichia sp. 4_1_40B cont1.44, whole genome shotgun sequence 
 Length of sequence - 24949 bp
 Number of predicted genes - 20, with homology - 20
 Number of transcription units - 7, operones - 6 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2   4/0.250   -    CDS       1051 -      2001    930  ## COG4569 Acetaldehyde dehydrogenase (acetylating)
     3     1 Op  3   1/1.000   -    CDS       1998 -      2807    861  ## COG3971 2-keto-4-pentenoate hydratase
     4     1 Op  4     .       -    CDS       2817 -      3683    995  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
     5     1 Op  5     .       -    CDS       3701 -      4645    799  ## SSON_0295 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16)
     6     1 Op  6     .       -    CDS       4647 -      6311   1850  ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
                               -    Prom      6402 -      6461    5.8 
                               +    Prom      6350 -      6409    6.1 
     7     2 Op  1     .       +    CDS       6502 -      7335    657  ## COG1414 Transcriptional regulator
     8     2 Op  2   1/1.000   +    CDS       7403 -      8494    977  ## COG1609 Transcriptional regulators
                               +    Prom      8499 -      8558    4.4 
     9     3 Op  1   3/0.750   +    CDS       8617 -     11691   2467  ## COG3250 Beta-galactosidase/beta-glucuronidase
                               +    Term     11699 -     11731    5.4 
    10     3 Op  2   4/0.250   +    CDS      11743 -     12996   1344  ## COG0477 Permeases of the major facilitator superfamily
    11     3 Op  3     .       +    CDS      13062 -     13673    275  ## COG0110 Acetyltransferase (isoleucine patch superfamily)
                               -    Term     13674 -     13710    3.5 
    12     4 Op  1   3/0.750   -    CDS      13776 -     14930   1155  ## COG2807 Cyanate permease
    13     4 Op  2   4/0.250   -    CDS      14963 -     15433    787  ## COG1513 Cyanate lyase
    14     4 Op  3     .       -    CDS      15464 -     16123    509  ## COG0288 Carbonic anhydrase
                               -    Prom     16216 -     16275    4.2 
                               +    Prom     16109 -     16168    2.7 
    15     5 Tu  1     .       +    CDS      16196 -     17131    512  ## COG0583 Transcriptional regulator
                               -    Term     17311 -     17356   -0.1 
    16     6 Op  1   6/0.000   -    CDS      17468 -     18751   1337  ## COG0402 Cytosine deaminase and related metal-dependent hydrolases
    17     6 Op  2   2/1.000   -    CDS      18741 -     20000   1480  ## COG1457 Purine-cytosine permease and related proteins
                               -    Prom     20038 -     20097    5.6 
    18     7 Op  1   4/0.250   -    CDS      20330 -     22216   2091  ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
    19     7 Op  2   8/0.000   -    CDS      22256 -     23707   1653  ## COG2079 Uncharacterized protein involved in propionate catabolism
    20     7 Op  3     .       -    CDS      23741 -     24910   1267  ## COG0372 Citrate synthase
Predicted protein(s)
>gi|223713554|gb|ACDM01000044.1| GENE     1        41  -      1054   1279    337 aa, chain - ## HITS:1  COG:mhpE KEGG:ns NR:ns ## COG: mhpE COG0119 # Protein_GI_number: 16128337 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli K12 # 1     337       1     337     337     631  100.0  0
MNGKKLYISDVTLRDGMHAIRHQYSLENVRQIAKALDDARVDSIEVAHGDGLQGSSFNYG
FGAHSDLEWIEAAADVVKHAKIATLLLPGIGTIHDLKNAWQAGARVVRVATHCTEADVSA
QHIQYARELGMDTVGFLMMSHMTTPENLAKQAKLMEGYGATCIYVVDSGGAMNMSDIRDR
FRALKAELKPETQTGMHAHHNLSLGVANSIAAVEEGCDRIDASLAGMGAGAGNAPLEVFI
AAADKLGWQHGTDLYALMDAADDLVRPLQDRPVRVDRETLALGYAGVYSSFLRHCETAAA
RYGLSAVDILVELGKRRMVGGQEDMIVDVALDLRNNK
>gi|223713554|gb|ACDM01000044.1| GENE     2      1051  -      2001    930    316 aa, chain - ## HITS:1  COG:mhpF KEGG:ns NR:ns ## COG: mhpF COG4569 # Protein_GI_number: 16128336 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetaldehyde dehydrogenase (acetylating) # Organism: Escherichia coli K12 # 1     316       1     316     316     578  100.0  1e-165
MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARARRMGVATTHEGVI
GLMNMPEFADIDIVFDATSAGAHVKNDAALREAKPDIRLIDLTPAAIGPYCVPVVNLEAN
VDQLNVNMVTCGGQATIPMVAAVSRVARVHYAEIIASIASKSAGPGTRANIDEFTETTSR
AIEVVGGAAKGKAIIVLNPAEPPLMMRDTVYVLSDEASQDDIEASINEMAEAVQAYVPGY
RLKQRVQFEVIPQDKPVNLPGVGQFSGLKTAVWLEVEGAAHYLPAYAGNLDIMTSSALAT
AEKMAQSLARKAGEAA
>gi|223713554|gb|ACDM01000044.1| GENE     3      1998  -      2807    861    269 aa, chain - ## HITS:1  COG:mhpD KEGG:ns NR:ns ## COG: mhpD COG3971 # Protein_GI_number: 16128335 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Escherichia coli K12 # 1     269       3     271     271     538  100.0  1e-153
MTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHDVAQGRRVVGRK
VGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATD
ITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGLDLKN
CAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVN
AGDRFEAHIEGIGSVAATFSSAAPKGSLS
>gi|223713554|gb|ACDM01000044.1| GENE     4      2817  -      3683    995    288 aa, chain - ## HITS:1  COG:mhpC KEGG:ns NR:ns ## COG: mhpC COG0596 # Protein_GI_number: 16128334 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1     288      22     309     309     603  100.0  1e-172
MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDP
LVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSS
VAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD
TSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDR
FVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFLARP
>gi|223713554|gb|ACDM01000044.1| GENE     5      3701  -      4645    799    314 aa, chain - ## HITS:1  COG:no KEGG:SSON_0295 NR:ns ## KEGG: SSON_0295 # Name: mhpB # Def: 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16) # Organism: S.sonnei # Pathway: Phenylalanine metabolism [PATH:ssn00360] # 1     314       1     314     314     640  100.0  0
MHAYLHCLSHSPLVGYVDPAQEVLDEVNGVIASARERIAAFSPELVVLFAPDHYNGFFYD
VMPPFCLGVGATAIGDFGSAAGELPVPVELAEACAHAVMKSGIDLAVSYCMQVDHGFAQP
LEFLLGGLDKVPVLPVFINGVATPLPGFQRTRMLGEAIGRFTSTLNKRVLFLGSGGLSHQ
PPVPELAKADAHMRDRLLGSGKDLPASERELRQQRVISAAEKFVEDQRTLHPLNPIWDNQ
FMTLLEQGRIQELDAVSNEELSAIAGKSTHEIKTWVAAFAAISAFGNWRSEGRYYRPIPE
WIAGFGSLSARTEN
>gi|223713554|gb|ACDM01000044.1| GENE     6      4647  -      6311   1850    554 aa, chain - ## HITS:1  COG:mhpA KEGG:ns NR:ns ## COG: mhpA COG0654 # Protein_GI_number: 16128332 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     554       1     554     554    1136   99.0  0
MAIQPPDIQPAVNHSVQVAIAGAGPVGLMMANYLGQMGIDVLVVEKLDKLIDYPRAIGID
DEALRTMQSVGLVDDVLPHTTPWHAMRFLTPKGRCFADIQPMTDEFGWPRRNAFIQPQVD
AVMLEGVSRFPNVRCLFSRELEAFSQQDDEVTLHLKTAEGQREIVKAQWLVACDGGASFV
RRTLNVPFEGKTAPNQWIVVDIANDPLSTPHIYLCCDPVRPYVSAALPHAVRRFEFMVMP
GETEEQLREPQNMRKLLSKVLPNPDNVELIRQRVYTHNARLAQRFRIDRVLLAGDAAHIM
PVWQGQGYNSGMRDAFNLAWKLALVIQGKARDALLDTYQQERRDHAKAMIDLSVTAGNVL
APPKRWQGTLRDGVSWLLNYLPPVKRYFLEMRFKPMPQYYGGALMREGEAKHSPVGKMFI
QPKVTLENGDVTLLDNAIGANFAVIGWGCNPLWGMSDEQIQQWRALGTRFIQVVPEVQIH
TAQDNHDGVLRVGDTQGRLRSWFAQHNASLVVMRPDRFVAATAIPQTLGKTLNKLASVMT
LTRPDADVSVEKVA
>gi|223713554|gb|ACDM01000044.1| GENE     7      6502  -      7335    657    277 aa, chain + ## HITS:1  COG:mhpR KEGG:ns NR:ns ## COG: mhpR COG1414 # Protein_GI_number: 16128331 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     277      39     315     315     507  100.0  1e-143
MQNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLLAELSGLHRTTVRRLLETLQEEGY
VRRSPSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLREVVWPTDVSTLDVDAMVV
RETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPEQDRKELIEMLASRPGDDYQLAR
EPLKLEAILARARKEGYGQNYRGWDQEEKIASIAVPLRSEQRVIGCLNLVYMASAMTIEQ
AAEKHLPALQRVAKQIEEGVESQAILVAGRRSGMHLR
>gi|223713554|gb|ACDM01000044.1| GENE     8      7403  -      8494    977    363 aa, chain + ## HITS:1  COG:lacI KEGG:ns NR:ns ## COG: lacI COG1609 # Protein_GI_number: 16128330 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 4     363       1     360     360     645   99.0  0
MVNVKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLA
GKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQ
RVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVAL
GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGI
VPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLG
QTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRLE
SGQ
>gi|223713554|gb|ACDM01000044.1| GENE     9      8617  -     11691   2467   1024 aa, chain + ## HITS:1  COG:lacZ KEGG:ns NR:ns ## COG: lacZ COG3250 # Protein_GI_number: 16128329 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1    1024       1    1024    1024    2102   99.0  0
MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR
FAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENP
TGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRA
GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAV
LEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPK
LWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKTLLIRGVNRHEH
HPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHG
MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVD
PSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYA
HAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDR
QFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALD
GKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQ
WRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTP
LRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTA
HAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLG
LGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNI
SRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLV
WCQK
>gi|223713554|gb|ACDM01000044.1| GENE    10     11743  -     12996   1344    417 aa, chain + ## HITS:1  COG:lacY KEGG:ns NR:ns ## COG: lacY COG0477 # Protein_GI_number: 16128328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     417       1     417     417     685   99.0  0
MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQ
PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA
GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALIL
AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD
QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIAGKNALLLAGTIMS
VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL
AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA
>gi|223713554|gb|ACDM01000044.1| GENE    11     13062  -     13673    275    203 aa, chain + ## HITS:1  COG:lacA KEGG:ns NR:ns ## COG: lacA COG0110 # Protein_GI_number: 16128327 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1     203       1     203     203     410  100.0  1e-114
MNMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGE
NAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHE
LRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCR
VIREINDRDKHYYFKDYKVESSV
>gi|223713554|gb|ACDM01000044.1| GENE    12     13776  -     14930   1155    384 aa, chain - ## HITS:1  COG:cynX KEGG:ns NR:ns ## COG: cynX COG2807 # Protein_GI_number: 16128326 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Escherichia coli K12 # 1     384       1     384     384     591  100.0  1e-169
MLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ
HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR
TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA
SSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALM
TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPMQLPVLWAMVCGLGLGGA
FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC
VVGLMIITLRFAPVRFPQLWVKEA
>gi|223713554|gb|ACDM01000044.1| GENE    13     14963  -     15433    787    156 aa, chain - ## HITS:1  COG:cynS KEGG:ns NR:ns ## COG: cynS COG1513 # Protein_GI_number: 16128325 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate lyase # Organism: Escherichia coli K12 # 1     156       1     156     156     291  100.0  3e-79
MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARL
VGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGI
ISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF
>gi|223713554|gb|ACDM01000044.1| GENE    14     15464  -     16123    509    219 aa, chain - ## HITS:1  COG:ZcynT KEGG:ns NR:ns ## COG: ZcynT COG0288 # Protein_GI_number: 15800068 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli O157:H7 EDL933 # 1     219       1     219     219     429  100.0  1e-120
MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVI
RNAGNIVPSYGPEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPAVS
HWLRYADSARVVNEARPHSDLPSKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGW
VYDIESGSIAAFDGATRQFVPLAANPRVCAIPLRQPTAA
>gi|223713554|gb|ACDM01000044.1| GENE    15     16196  -     17131    512    311 aa, chain + ## HITS:1  COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 13     311       1     299     299     554  100.0  1e-158
MMSSIGFTYRLRMLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLF
DRSGRTIRLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGP
LMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALV
VAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVL
ELIRRTSLSTLLPAAIATQHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALD
KCAVVGGNESR
>gi|223713554|gb|ACDM01000044.1| GENE    16     17468  -     18751   1337    427 aa, chain - ## HITS:1  COG:codA KEGG:ns NR:ns ## COG: codA COG0402 # Protein_GI_number: 16128322 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     427       1     427     427     882  100.0  0
MSNNALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVE
PHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHV
RTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADV
VGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEGMG
ARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVK
EMLESGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSAR
TLNLQDYGIAAGNSANLIILPAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQP
EAIDYKR
>gi|223713554|gb|ACDM01000044.1| GENE    17     18741  -     20000   1480    419 aa, chain - ## HITS:1  COG:codB KEGG:ns NR:ns ## COG: codB COG1457 # Protein_GI_number: 16128321 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Escherichia coli K12 # 1     419       1     419     419     669   99.0  0
MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGN
LLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPV
GTATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLD
ALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMF
IFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSK
TLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMS
VNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE
>gi|223713554|gb|ACDM01000044.1| GENE    18     20330  -     22216   2091    628 aa, chain - ## HITS:1  COG:prpE KEGG:ns NR:ns ## COG: prpE COG0365 # Protein_GI_number: 16128320 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Escherichia coli K12 # 1     628       1     628     628    1283   99.0  0
MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDR
WLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAE
AHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDD
AISQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYT
SGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLAG
MATIVYEGLPTWPDCGVWWKIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLY
LAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYN
VQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYATFDWG
IRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAF
VIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQA
ICEGRDPGDLTTIDDPASLDQIRQAMEE
>gi|223713554|gb|ACDM01000044.1| GENE    19     22256  -     23707   1653    483 aa, chain - ## HITS:1  COG:prpD KEGG:ns NR:ns ## COG: prpD COG2079 # Protein_GI_number: 16128319 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in propionate catabolism # Organism: Escherichia coli K12 # 1     483       1     483     483    1008  100.0  0
MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKL
LGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI
LATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVAST
AVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAK
TGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAA
MTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGR
LTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEV
VVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDL
YVI
>gi|223713554|gb|ACDM01000044.1| GENE    20     23741  -     24910   1267    389 aa, chain - ## HITS:1  COG:prpC KEGG:ns NR:ns ## COG: prpC COG0372 # Protein_GI_number: 16128318 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Escherichia coli K12 # 1     389       1     389     389     780  100.0  0
MSDTTILQNSTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAKHCEFEE
VAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCT
LPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGE
KPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANE
VSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGS
LKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIE
QRQDNKIIRPSANYVGPEDRPFVALDKRQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:02:47 2011
 Seq name: gi|223713553|gb|ACDM01000045.1| Escherichia sp. 4_1_40B cont1.45, whole genome shotgun sequence 
 Length of sequence - 54818 bp
 Number of predicted genes - 51, with homology - 50
 Number of transcription units - 29, operones - 13 average op.length -  2.7
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        106 -       996    994  ## COG2513 PEP phosphonomutase and related enzymes
                               -    Prom      1080 -      1139    4.8 
                               +    Prom      1058 -      1117    4.7 
     2     2 Tu  1     .       +    CDS       1235 -      2821   1383  ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
                               +    Term      2824 -      2869    2.7 
     3     3 Tu  1     .       -    CDS       2978 -      3193    323  ## B21_00288 hypothetical protein
                               -    Prom      3315 -      3374    4.5 
                               +    Prom      3035 -      3094    6.3 
     4     4 Tu  1     .       +    CDS       3343 -      4011    565  ## COG1280 Putative threonine efflux protein
                               +    Term      4138 -      4171   -0.4 
                               -   TRNA       4263 -      4343   28.4  # Pseudo ??? 0 0
     5     5 Tu  1     .       -    CDS       4686 -      5501    405  ## B21_00285 hypothetical protein
                               -    Prom      5528 -      5587    5.5 
     6     6 Tu  1     .       -    CDS       5744 -      6793   1075  ## COG1064 Zn-dependent alcohol dehydrogenases
                               -    Prom      6980 -      7039    2.4 
     7     7 Op  1   3/0.571   -    CDS       7170 -      8552   1485  ## COG0402 Cytosine deaminase and related metal-dependent hydrolases
     8     7 Op  2     .       -    CDS       8562 -      9512   1098  ## COG0549 Carbamate kinase
                               -    Prom      9558 -      9617    6.6 
                               -    Term      9829 -      9865    2.4 
     9     8 Op  1     .       -    CDS       9934 -     11352   1727  ## JW0313 conserved hypothetical protein
    10     8 Op  2     .       -    CDS      11352 -     12899   1989  ## COG0074 Succinyl-CoA synthetase, alpha subunit
    11     8 Op  3     .       -    CDS      12889 -     13752    438  ## JW0311 hypothetical protein
    12     8 Op  4     .       -    CDS      13792 -     14397    675  ## COG0666 FOG: Ankyrin repeat
                               -    Prom     14431 -     14490    4.0 
    13     9 Op  1     .       +    CDS      14655 -     15152    404  ## JW0309 predicted inner membrane protein
    14     9 Op  2     .       +    CDS      15244 -     16176    954  ## COG0583 Transcriptional regulator
    15    10 Tu  1     .       -    CDS      16218 -     17306    728  ## COG2200 FOG: EAL domain
                               -    Prom     17473 -     17532    4.5 
                               +    Prom     17547 -     17606    5.1 
    16    11 Tu  1     .       +    CDS      17626 -     17811     81  ## ECBD_3343 hypothetical protein
                               +    Term     17950 -     17986   -1.0 
                               -    Term     18128 -     18162    4.0 
    17    12 Tu  1     .       -    CDS      18181 -     20214   2355  ## COG1292 Choline-glycine betaine transporter
                               -    Prom     20266 -     20325    3.0 
                               +    Prom     20230 -     20289    5.0 
    18    13 Op  1   6/0.000   +    CDS      20325 -     20930    550  ## COG1309 Transcriptional regulator
    19    13 Op  2  10/0.000   +    CDS      20944 -     22416   1615  ## COG1012 NAD-dependent aldehyde dehydrogenases
    20    13 Op  3     .       +    CDS      22430 -     24100   1715  ## COG2303 Choline dehydrogenase and related flavoproteins
                               +    Prom     24168 -     24227    2.2 
    21    14 Tu  1     .       +    CDS      24313 -     24981     17  ## B21_00269 hypothetical protein
                               +    Term     25086 -     25120    0.8 
                               -    Term     25072 -     25110    7.2 
    22    15 Op  1  13/0.000   -    CDS      25224 -     25919    536  ## COG1556 Uncharacterized conserved protein
    23    15 Op  2  17/0.000   -    CDS      25912 -     27339   1126  ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain
    24    15 Op  3     .       -    CDS      27350 -     28069    561  ## COG0247 Fe-S oxidoreductase
                               -    Prom     28192 -     28251    7.6 
                               +    Prom     28189 -     28248    6.9 
    25    16 Tu  1     .       +    CDS      28268 -     28438     92  ## ECH74115_0358 hypothetical protein
    26    17 Tu  1     .       -    CDS      28596 -     29450    317  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     29560 -     29619    8.8 
                               +    Prom     29501 -     29560    5.3 
    27    18 Op  1     .       +    CDS      29676 -     31001    385  ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1
    28    18 Op  2     .       +    CDS      31098 -     31346     76  ## G2583_0402 hypothetical protein
    29    18 Op  3     .       +    CDS      31358 -     31951    618  ## COG3059 Predicted membrane protein
    30    19 Tu  1     .       -    CDS      32110 -     32214     70  ## COG0656 Aldo/keto reductases, related to diketogulonate reductase
                               -    Prom     32344 -     32403    4.5 
                               +    Prom     32345 -     32404    3.0 
    31    20 Op  1     .       +    CDS      32541 -     33392    413  ## COG2207 AraC-type DNA-binding domain-containing proteins
    32    20 Op  2     .       +    CDS      33352 -     33507     72  ## gi|194438170|ref|ZP_03070262.1| hypothetical protein EC1011_2792
                               -    Term     33459 -     33493    4.6 
    33    21 Op  1     .       -    CDS      33532 -     34080    307  ## EcolC_3322 Ig domain-containing protein
    34    21 Op  2     .       -    CDS      34085 -     37123   2087  ## EcolC_3322 Ig domain-containing protein
                               -    Prom     37329 -     37388    7.2 
                               +    Prom     38078 -     38137    4.7 
    35    22 Tu  1     .       +    CDS      38238 -     38339    103  ## 
                               +    Prom     38617 -     38676    5.2 
    36    23 Op  1   6/0.000   +    CDS      38700 -     38966    460  ## PROTEIN SUPPORTED gi|110640565|ref|YP_668293.1| 50S ribosomal protein L31 type B
    37    23 Op  2     .       +    CDS      38963 -     39106    241  ## PROTEIN SUPPORTED gi|26246304|ref|NP_752343.1| 50S ribosomal protein L36
                               +    Term     39132 -     39169    3.7 
                               +    Prom     39989 -     40048    6.1 
    38    24 Op  1     .       +    CDS      40192 -     40734    189  ## COG2771 DNA-binding HTH domain-containing proteins
    39    24 Op  2     .       +    CDS      40809 -     41396    595  ## JW0287 conserved hypothetical protein
                               +    Term     41413 -     41445    3.0 
    40    25 Op  1     .       +    CDS      41454 -     42122    444  ## JW0286 hypothetical protein
    41    25 Op  2     .       +    CDS      42148 -     44673   1934  ## B21_00253 hypothetical protein
    42    25 Op  3     .       +    CDS      44687 -     45760    451  ## JW0284 predicted receptor
                               +    Prom     45770 -     45829    2.1 
    43    26 Op  1     .       +    CDS      45965 -     46306    337  ## ECO103_0267 hypothetical protein
    44    26 Op  2     .       +    CDS      46275 -     46985    473  ## JW5030 conserved hypothetical protein
                               +    Term     47233 -     47273    3.2 
                               -    Term     47657 -     47700    2.7 
    45    27 Tu  1     .       -    CDS      47842 -     48456    304  ## COG3477 Predicted periplasmic/secreted protein
                               -    Prom     48511 -     48570    5.4 
    46    28 Op  1  15/0.000   +    CDS      48874 -     49563    450  ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
    47    28 Op  2  12/0.000   +    CDS      49560 -     50516    655  ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
    48    28 Op  3   6/0.000   +    CDS      50513 -     52711   1670  ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
    49    28 Op  4   2/0.571   +    CDS      52721 -     53677    507  ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
    50    28 Op  5   1/1.000   +    CDS      53656 -     54066    309  ## COG0583 Transcriptional regulator
                               +    Term     54314 -     54357    3.1 
                               +    Prom     54407 -     54466    1.9 
    51    29 Tu  1     .       +    CDS      54501 -     54686     76  ## COG2801 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713553|gb|ACDM01000045.1| GENE     1       106  -       996    994    296 aa, chain - ## HITS:1  COG:prpB KEGG:ns NR:ns ## COG: prpB COG2513 # Protein_GI_number: 16128316 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Escherichia coli K12 # 1     296       1     296     296     562  100.0  1e-160
MSLHSPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLG
ISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGA
KRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEA
GAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAF
RAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEKLDNLFARSQVK
>gi|223713553|gb|ACDM01000045.1| GENE     2      1235  -      2821   1383    528 aa, chain + ## HITS:1  COG:prpR KEGG:ns NR:ns ## COG: prpR COG1221 # Protein_GI_number: 16128315 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1     528       1     528     528    1029  100.0  0
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE
RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV
AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA
TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA
AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE
GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD
VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL
SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP
ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS
>gi|223713553|gb|ACDM01000045.1| GENE     3      2978  -      3193    323     71 aa, chain - ## HITS:1  COG:no KEGG:B21_00288 NR:ns ## KEGG: B21_00288 # Name: yahO # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      66       1      66      91     102  100.0  5e-21
MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIK
KADEKGLMCWY
>gi|223713553|gb|ACDM01000045.1| GENE     4      3343  -      4011    565    222 aa, chain + ## HITS:1  COG:yahN KEGG:ns NR:ns ## COG: yahN COG1280 # Protein_GI_number: 16128313 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1     222       2     223     223     401  100.0  1e-112
MQLVHLFMDEITMDPLHAVYLTVGLFVITFFNPGANLFVVVQTSLASGRRAGVLTGLGVA
LGDAFYSGLGLFGLATLITQCEEIFSLIRIVGGAYLLWFAWCSMRRQSTPQMSTLQQPIS
APWYVFFRRGLITDLSNPQTVLFFISIFSVTLNAETPTWARLMAWAGIVLASIIWRVFLS
QAFSLPAVRRAYGRMQRVASRVIGAIIGVFALRLIYEGVTQR
>gi|223713553|gb|ACDM01000045.1| GENE     5      4686  -      5501    405    271 aa, chain - ## HITS:1  COG:no KEGG:B21_00285 NR:ns ## KEGG: B21_00285 # Name: yahL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     271       1     271     271     482  100.0  1e-135
MISLKAPHNNLMPYTQQSILNTVKNNQLPEDIKSSLVSCVDIFKVLIKQYYDYPYDCRDD
LVDDDKLIHLMAAVRDCEWSDDNALTINVQFNDFPGFYDWMDYPDHPVKFVFHILENQKG
TVWVYDQDDAFLDIKANVQAGRFTGLKKLVQFIDSVRTDCKCILLEYHMPLLRIFPKGKE
CMHVEKWLREMSSIPETDAPIKQALAHGLLLHLKNIYPVFPESLVMLLLSVLDVKTYRDD
ARLNEWISNRVQELGDRYYPVNKHVKIRYTL
>gi|223713553|gb|ACDM01000045.1| GENE     6      5744  -      6793   1075    349 aa, chain - ## HITS:1  COG:yahK KEGG:ns NR:ns ## COG: yahK COG1064 # Protein_GI_number: 16128310 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1     349       1     349     349     690  100.0  0
MKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP
GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPD
EPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGV
VGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDF
ILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPET
QEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTLTD
>gi|223713553|gb|ACDM01000045.1| GENE     7      7170  -      8552   1485    460 aa, chain - ## HITS:1  COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     460       1     460     460     927  100.0  0
MKESNSRREFLSQSGKMVTAAALFGTSVPLAHAAVAGTLNCEANNTMKITDPHYYLDNVL
LETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKLHPDATLPHYDAGGKLMLPTTRDM
HIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTI
ARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFPQHGLLLSKSEPLMREAMQAGAH
YVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQL
KGKLTISHAFALATLNEQQVDELANRMVVQQISIASTVPIGTLHMPLKQLHDKGVKVMTG
TDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKA
QDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG
>gi|223713553|gb|ACDM01000045.1| GENE     8      8562  -      9512   1098    316 aa, chain - ## HITS:1  COG:yahI KEGG:ns NR:ns ## COG: yahI COG0549 # Protein_GI_number: 16128308 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1     316       1     316     316     584  100.0  1e-167
MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLD
LRRAEIAHKREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDK
NDPGFAHPTKPIGAFFSDSQRDELQKANPDWCFVEDAGRGYRRVVASPEPKRIVEAPAIK
ALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK
VCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPEC
LPAALRGETGTHIIKT
>gi|223713553|gb|ACDM01000045.1| GENE     9      9934  -     11352   1727    472 aa, chain - ## HITS:1  COG:no KEGG:JW0313 NR:ns ## KEGG: JW0313 # Name: yahG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     472       1     472     472     941  100.0  0
MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLAD
KIAAANQQALERIIQSHPVLIGFDQAINVVPGMTAKTILHAGPPITWEKMCGAMKGAVTG
ALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNIAY
TNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPILRDAMKIIGEIDLRLMLAQALHMGDE
CHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAH
GIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAIT
ETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPSAID
ITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAILGWCERYGV
>gi|223713553|gb|ACDM01000045.1| GENE    10     11352  -     12899   1989    515 aa, chain - ## HITS:1  COG:yahF KEGG:ns NR:ns ## COG: yahF COG0074 # Protein_GI_number: 16128305 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli K12 # 1     515       1     515     515     988  100.0  0
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQA
KNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVIS
VNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAA
LCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI
GMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARG
TKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAV
MEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEA
RDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSL
EQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
>gi|223713553|gb|ACDM01000045.1| GENE    11     12889  -     13752    438    287 aa, chain - ## HITS:1  COG:no KEGG:JW0311 NR:ns ## KEGG: JW0311 # Name: yahE # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     287       1     287     287     599  100.0  1e-170
MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFD
DLFRHGDKVQFDDQGITVGQHLHIEMSRCRRWLSPTLQMTAVNFHLIAWLQWHDIIHQHL
GENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIASAVASMMGLGIGLTPSADD
YLTGLALILFIPGHPAEKYKEEFYLGLQRGKNNTTLLSAITLEAALQQRCRENIHRFIHN
IIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS
>gi|223713553|gb|ACDM01000045.1| GENE    12     13792  -     14397    675    201 aa, chain - ## HITS:1  COG:yahD KEGG:ns NR:ns ## COG: yahD COG0666 # Protein_GI_number: 16128303 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1     201       1     201     201     395  100.0  1e-110
MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALID
AGADINKQDHTCLNPFLISCLNDDLTLLRIILPAKPDLNCVTRFGGVGLTPACEKGHLSI
VKELLAHTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTP
LELARERGFEEIAQLLIAAGA
>gi|223713553|gb|ACDM01000045.1| GENE    13     14655  -     15152    404    165 aa, chain + ## HITS:1  COG:no KEGG:JW0309 NR:ns ## KEGG: JW0309 # Name: yahC # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     165       1     165     165     253  100.0  2e-66
MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLA
VNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLG
MTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATTKRDGY
>gi|223713553|gb|ACDM01000045.1| GENE    14     15244  -     16176    954    310 aa, chain + ## HITS:1  COG:yahB KEGG:ns NR:ns ## COG: yahB COG0583 # Protein_GI_number: 16128301 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     310       1     310     310     634   99.0  0
MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRSTRSIE
LTESGRYFFRKATDLLNDFYAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKK
QFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWAFAIAPDH
PLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
IGFLPDYMVREAMTQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFAPNGILTG
IYQDLLHREN
>gi|223713553|gb|ACDM01000045.1| GENE    15     16218  -     17306    728    362 aa, chain - ## HITS:1  COG:yahA_2 KEGG:ns NR:ns ## COG: yahA_2 COG2200 # Protein_GI_number: 16128300 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 101     362       1     262     262     552  100.0  1e-157
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQK
KQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENH
EFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQT
ADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIP
VTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGH
IVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKA
GG
>gi|223713553|gb|ACDM01000045.1| GENE    16     17626  -     17811     81     61 aa, chain + ## HITS:1  COG:no KEGG:ECBD_3343 NR:ns ## KEGG: ECBD_3343 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      61       1      61      61     115  100.0  6e-25
MSKGALYEFNNPDQLKIPLPHKHIASTFNDIMSKDVGYAYVSLLYACPLKTHSLRLNPFS
K
>gi|223713553|gb|ACDM01000045.1| GENE    17     18181  -     20214   2355    677 aa, chain - ## HITS:1  COG:ECs0360 KEGG:ns NR:ns ## COG: ECs0360 COG1292 # Protein_GI_number: 15829614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli O157:H7 # 1     677       1     677     677    1333  100.0  0
MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLL
AATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQ
YMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYP
IFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIAL
SVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFM
GMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFT
FTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLF
YVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVI
MGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGT
RYTKQMMETVCYPAMEEVAQELRLRGAYVELKSLPPEEGQQLGHLDLLVHMGEEQNFVYQ
IWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNF
IHLHREAPGHSVMFPDA
>gi|223713553|gb|ACDM01000045.1| GENE    18     20325  -     20930    550    201 aa, chain + ## HITS:1  COG:betI KEGG:ns NR:ns ## COG: betI COG1309 # Protein_GI_number: 16128298 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 7     201       1     195     195     357   99.0  6e-99
MNGVAKMPKLGMQSIRRRQLIDATLVAINEVGMHDATIAQIARRAGVSTGIISHYFRDKN
GLLEATMRDITSQLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQVSSAAMKAWLAFWA
SSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPREQAQEAGYGLAALIDGLWLRAALSGKP
LDKTRANSLTRHFITQHLPTD
>gi|223713553|gb|ACDM01000045.1| GENE    19     20944  -     22416   1615    490 aa, chain + ## HITS:1  COG:betB KEGG:ns NR:ns ## COG: betB COG1012 # Protein_GI_number: 16128297 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     490       1     490     490     959  100.0  0
MSRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIW
ASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLI
PALEGSQIPLRETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEV
TPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMAN
SAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKCKA
AFEQKILARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKG
DGFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIV
TADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQ
VEMAKFQSIF
>gi|223713553|gb|ACDM01000045.1| GENE    20     22430  -     24100   1715    556 aa, chain + ## HITS:1  COG:betA KEGG:ns NR:ns ## COG: betA COG2303 # Protein_GI_number: 16128296 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Escherichia coli K12 # 1     556       1     556     556    1170  100.0  0
MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY
NWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLD
CLPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQ
QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDGKRAVGVEWLEG
DSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHL
EMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNI
QYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQD
WQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKM
GYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALPRS
TAGYFVANGMPVRAKK
>gi|223713553|gb|ACDM01000045.1| GENE    21     24313  -     24981     17    222 aa, chain + ## HITS:1  COG:no KEGG:B21_00269 NR:ns ## KEGG: B21_00269 # Name: ykgH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     222       1     222     222     441  100.0  1e-122
MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTP
GILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEIS
RVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSP
EIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ
>gi|223713553|gb|ACDM01000045.1| GENE    22     25224  -     25919    536    231 aa, chain - ## HITS:1  COG:ykgG KEGG:ns NR:ns ## COG: ykgG COG1556 # Protein_GI_number: 16128293 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     231      52     282     282     444  100.0  1e-125
MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLT
RCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAEN
ISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLA
EKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC
>gi|223713553|gb|ACDM01000045.1| GENE    23     25912  -     27339   1126    475 aa, chain - ## HITS:1  COG:ykgF KEGG:ns NR:ns ## COG: ykgF COG1139 # Protein_GI_number: 16128292 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Escherichia coli K12 # 1     475       1     475     475    1003  100.0  0
MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRD
HVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEI
GVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPET
PEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG
MERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSE
VLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPY
ACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGM
MAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG
>gi|223713553|gb|ACDM01000045.1| GENE    24     27350  -     28069    561    239 aa, chain - ## HITS:1  COG:ykgE KEGG:ns NR:ns ## COG: ykgE COG0247 # Protein_GI_number: 16128291 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli K12 # 1     239       1     239     239     486  100.0  1e-137
MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMK
NLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLG
VVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSV
KMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR
>gi|223713553|gb|ACDM01000045.1| GENE    25     28268  -     28438     92     56 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_0358 NR:ns ## KEGG: ECH74115_0358 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      56       1      56      56     100  100.0  1e-20
MGKSTIIFGIRNPFKNGYIPYTYSELLIQGLLRYTLMVYKKITDNNHVSSNSRDFI
>gi|223713553|gb|ACDM01000045.1| GENE    26     28596  -     29450    317    284 aa, chain - ## HITS:1  COG:ykgD KEGG:ns NR:ns ## COG: ykgD COG2207 # Protein_GI_number: 16128290 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     284       1     284     284     564  100.0  1e-161
MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT
LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY
NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG
AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR
ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
>gi|223713553|gb|ACDM01000045.1| GENE    27     29676  -     31001    385    441 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1     433       1     444     458 152  26 3e-36
MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ
HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHG
EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANF
GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ
LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFT
YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL
PVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILR
DQIFTHPSMSESLNDLFSLVK
>gi|223713553|gb|ACDM01000045.1| GENE    28     31098  -     31346     76     82 aa, chain + ## HITS:1  COG:no KEGG:G2583_0402 NR:ns ## KEGG: G2583_0402 # Name: ykgI # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      82       2      83      83     121   97.0  8e-27
MVFYMFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDTIADIARKYNA
SSWKVTSMRIDNNSTATAVLYK
>gi|223713553|gb|ACDM01000045.1| GENE    29     31358  -     31951    618    197 aa, chain + ## HITS:1  COG:ykgB KEGG:ns NR:ns ## COG: ykgB COG3059 # Protein_GI_number: 16128286 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     197       4     200     200     387  100.0  1e-108
MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHP
EDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLM
AFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSARE
ILKQRSNESSSTLKTEY
>gi|223713553|gb|ACDM01000045.1| GENE    30     32110  -     32214     70     34 aa, chain - ## HITS:1  COG:ECs0338 KEGG:ns NR:ns ## COG: ECs0338 COG0656 # Protein_GI_number: 15829592 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli O157:H7 # 1      34     256     289     289      77  100.0  8e-15
MAQISSLDLGYVGESVKHFNPEFVRGCLAVKIHD
>gi|223713553|gb|ACDM01000045.1| GENE    31     32541  -     33392    413    283 aa, chain + ## HITS:1  COG:ECs0337 KEGG:ns NR:ns ## COG: ECs0337 COG2207 # Protein_GI_number: 15829591 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     283      12     296     296     550   93.0  1e-156
MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLC
RAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLI
RQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVS
TFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYASFRYEGNWENYPDWVRNIYLI
ELPARGLARVNGSDIERFYYNEDFVEKDGNDVVCEIFIPVRPV
>gi|223713553|gb|ACDM01000045.1| GENE    32     33352  -     33507     72     51 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|194438170|ref|ZP_03070262.1| ## NR: gi|194438170|ref|ZP_03070262.1| hypothetical protein EC1011_2792 [Escherichia coli 101-1] # 2      51       1      50      50      70   98.0  4e-11
MLFAKFLFPFVRFSWSLSLIEFYPCLILFNQYQARYSVNNGVEYFNTIILY
>gi|223713553|gb|ACDM01000045.1| GENE    33     33532  -     34080    307    182 aa, chain - ## HITS:1  COG:no KEGG:EcolC_3322 NR:ns ## KEGG: EcolC_3322 # Name: not_defined # Def: Ig domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     182    1237    1418    1418     311   99.0  5e-84
MTLTASSENLVLDPKGTAKTNEQGQAVFTGSTTIAATYTLTAKVEQANGQVSTKTAESKF
VADDKNAVLAASPERVDSLVADGKTTATMTVTLMAGVNPVGGSMWVDIEAPEGVTEKDYQ
FLPSKADHFSGGKITRTFSTSKPGVYTFTFNALTYGGYEMTPVKVTINAVAAETENGEEE
MP
>gi|223713553|gb|ACDM01000045.1| GENE    34     34085  -     37123   2087   1012 aa, chain - ## HITS:1  COG:no KEGG:EcolC_3322 NR:ns ## KEGG: EcolC_3322 # Name: not_defined # Def: Ig domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1    1012       1    1012    1418    1837   99.0  0
MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNT
TVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV
KLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMA
GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDI
RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLLTLSAGHK
QGKSGENDTRFGLEVNYRIGEPLAKQLDTDSIRERRVLAGSRYDLVERNNNIVLEYRKSE
VIRIALPERIEGKGGQTLSLGLVVSKATHGLKNVQWEAPSLLAEGGKITGQGSQWQVTLP
AYRPGKDNYYAISAVAYDNKGNASKRVQTEVVITGAGMSADRTALTLDGQSRIQMLANGN
EQRPLVLSLRDAEGQPVTGMKDQIKTELAFKPAGNIVTRSLKATKSQAKPTLGEFTETEA
GVYQSVFTTGTQSGEATITVSVDGMSKTVTAELRATMMDVANSTLSANEPSGDVVADGQQ
AYTLTLTAVDSEGNPVTGEASRLRFVPQDTNGVTVGAISEIKPGVYSATVSSTRAGNVVV
RAFSEQYQLGTLQQTLKFVAGPLDAAHSSITLNPDKPVVGGTVTAIWTAKDAYDNPVTSL
TPEAPSLAGAAAVGSTASGWTNNGDGTWTAQITLGSTAGELEVMPKLNGQDAAANAAKVT
VVADALSSNQSKVSVAEDHVKAGESTTVTLIAKDAHGNTISGLSLSASLTGTASEGATVS
SWTEKGDCSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNK
APTVKMTTELTFTVKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVATL
TLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQLAKG
>gi|223713553|gb|ACDM01000045.1| GENE    35     38238  -     38339    103     33 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MKENKVQQISHKLINIVVFVVIVEYAYLFLHFY
>gi|223713553|gb|ACDM01000045.1| GENE    36     38700  -     38966    460     88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110640565|ref|YP_668293.1| 50S ribosomal protein L31 type B [Escherichia coli 536] # 1      88       1      88      88 181  100 6e-45
MMKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPYVTIDVSSKSHPFYTG
KLRTVASEGNVARFTQRFGRFVSTKKGA
>gi|223713553|gb|ACDM01000045.1| GENE    37     38963  -     39106    241     47 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|26246304|ref|NP_752343.1| 50S ribosomal protein L36 [Escherichia coli CFT073] # 1      47       1      47      47 97  97 2e-19
MMKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR
>gi|223713553|gb|ACDM01000045.1| GENE    38     40192  -     40734    189    180 aa, chain + ## HITS:1  COG:ykgK KEGG:ns NR:ns ## COG: ykgK COG2771 # Protein_GI_number: 16128279 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1     180      17     196     196     333  100.0  1e-91
MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFIN
RDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFL
RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
>gi|223713553|gb|ACDM01000045.1| GENE    39     40809  -     41396    595    195 aa, chain + ## HITS:1  COG:no KEGG:JW0287 NR:ns ## KEGG: JW0287 # Name: yagZ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     195       1     195     195     290  100.0  2e-77
MKKKVLAIALVTVFTGMGVAQAADVTAQAVATWSATAKKDTTSKLVVTPLGSLAFQYAEG
IKGFNSQKGLFDVAIEGDSTATAFKLTSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTG
DTVMIDTANGVLGGNLSPLANGYNASNRTTAQDGFTFSIISGTTNGTTAVTDYSTLPEGI
WSGDVSVQFDATWTS
>gi|223713553|gb|ACDM01000045.1| GENE    40     41454  -     42122    444    222 aa, chain + ## HITS:1  COG:no KEGG:JW0286 NR:ns ## KEGG: JW0286 # Name: yagY # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     222       1     222     222     417   99.0  1e-115
MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNSTDSGRLINIRLERLSS
PLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPADEKERYYRIVWFDQALSDT
QRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLTNTGNATLRILAYGPCLKAAN
GKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKFIPVK
>gi|223713553|gb|ACDM01000045.1| GENE    41     42148  -     44673   1934    841 aa, chain + ## HITS:1  COG:no KEGG:B21_00253 NR:ns ## KEGG: B21_00253 # Name: yagX # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     841       1     841     841    1545   99.0  0
MPLRRFSPGLKAQFAFGMVFLFVQPDASAADISAQQIGGVIIPQAFSQALQDGMSVPLYI
HLAGSQGRQDDQRIGSAFIWLDDGQLRIRKIQLEESEDNASVSEQTRQQLMALANAPFNE
ALTIPLTDNAQLDLSLRQLLLQLVVKREALGTVLRSRSEDIGQSSVNTLSSNLSYNLGVY
NNQLRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRF
AGGMLDTWNLQSLGPMTAISAGKIYGLSWGNQASSTIFDSSQSATPVIAFLPAAGEVHLT
RDGRLLSVQNFTMGNHEVDTRGLPYGIYDVEVEVIVNGRVISKRTQRVNKLFSRGRGVGA
PLAWQVWGGSFHMDRWSENGKKTRPAKESWLAGASTSGSLSTLSWAATGYGYDNQAVGET
RLTLPLGGAINVNLQNMLASDSSWSSIGSISATLPGGFSSLWVNQEKTRIGNQLRRSDAD
NRAIGGTLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQNVYSGTFGSLGLRAGIQRY
NNGDSNANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTVGANLSR
AISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTANGSVGWQGKNIAASG
RTDGNAGVIFNTGLEDDGQISAKINGRIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSY
DIVSGRKSRLTLYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENG
EFVMDVDKKYPTIDFRYSGNKTCEVALELNQARGAVWVGDVVCSGLSSWAAVTQTGEENE
S
>gi|223713553|gb|ACDM01000045.1| GENE    42     44687  -     45760    451    357 aa, chain + ## HITS:1  COG:no KEGG:JW0284 NR:ns ## KEGG: JW0284 # Name: yagW # Def: predicted receptor # Organism: E.coli_J # Pathway: not_defined # 1     357       9     365     547     688   99.0  0
MIIFALIWPVTALRAAVSKTTWADAPAREFVFVENNSDDNFFVTPGGALDPRLTGANRWT
GLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDMWLENSPVSSPLTGLRCINWYAGCNMT
TSLILPQTTDASGFYGATVTSGGAKWMHGMLSDAFYQYMQQMPVGSSFTITINACQTSVN
YDASSGARCKDQASGNWYVRNVTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRT
QTIGSRSGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPV
SNTAYYYTFNEMKSADSIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESG
>gi|223713553|gb|ACDM01000045.1| GENE    43     45965  -     46306    337    113 aa, chain + ## HITS:1  COG:no KEGG:ECO103_0267 NR:ns ## KEGG: ECO103_0267 # Name: ecpD # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     113     435     547     547     225   99.0  4e-58
MIGGRSYCVFSSDDGKAKVPFPATLSFITRNGATKTYDAGCDDSWRDMTDALWLTTPWTD
ISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN
>gi|223713553|gb|ACDM01000045.1| GENE    44     46275  -     46985    473    236 aa, chain + ## HITS:1  COG:no KEGG:JW5030 NR:ns ## KEGG: JW5030 # Name: yagV # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     236       1     236     236     472   99.0  1e-132
MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRI
AISAIDSPGSSELRTRPVDVELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFRE
VPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLI
KPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD
>gi|223713553|gb|ACDM01000045.1| GENE    45     47842  -     48456    304    204 aa, chain - ## HITS:1  COG:ECs0317 KEGG:ns NR:ns ## COG: ECs0317 COG3477 # Protein_GI_number: 15829571 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Escherichia coli O157:H7 # 1     204       1     204     204     408  100.0  1e-114
MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRA
AGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVV
AEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIE
IIRRDLRNRITHEPDPEIPLGSNR
>gi|223713553|gb|ACDM01000045.1| GENE    46     48874  -     49563    450    229 aa, chain + ## HITS:1  COG:yagT KEGG:ns NR:ns ## COG: yagT COG2080 # Protein_GI_number: 16128271 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Escherichia coli K12 # 1     229       1     229     229     431  100.0  1e-121
MSNQGEYPEDNRVGKHEPHDLSLTRRDLIKVSAATAATAVVYPHSTLAASVPAATPAPEI
MPLTLKVNGKTEQLEVDTRTTLLDTLRENLHLIGTKKGCDHGQCGACTVLVNGRRLNACL
TLAVMHQGAEITTIEGLGSPDNLHPMQAAFIKHDGFQCGYCTSGQICSSVAVLKEIQDGI
PSHVTVDLVSAPETTADEIRERMSGNICRCGAYANILAAIEDAAGEIKS
>gi|223713553|gb|ACDM01000045.1| GENE    47     49560  -     50516    655    318 aa, chain + ## HITS:1  COG:yagS KEGG:ns NR:ns ## COG: yagS COG1319 # Protein_GI_number: 16128270 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli K12 # 1     318       1     318     318     599  100.0  1e-171
MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIE
VTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCP
YFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETIT
PEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFA
LVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKL
LLAKRTLASVLAEARAQA
>gi|223713553|gb|ACDM01000045.1| GENE    48     50513  -     52711   1670    732 aa, chain + ## HITS:1  COG:yagR KEGG:ns NR:ns ## COG: yagR COG1529 # Protein_GI_number: 16128269 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli K12 # 1     732       1     732     732    1404  100.0  0
MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEEAPNAAYGYIVGSAIAK
GRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGGPTIEHYHQAIALVVAETF
EQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDKNVGDFDGAFTSAAVKIDATY
TTPDQSHMAMEPHASMAVWDGNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPYIGG
GFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKIT
AISHESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMA
LEIAIDELAEKAGIDPVEFRILNDTQVDPADPTRCFSRRQLIECLRTGADKFGWKQRNAT
PGQVRDGEWLVGHGVAAGFRNNLLEKSGARVHLEQNGTVTVETDMTDIGTGSYTILAQTA
AEMLGVPLEQVAVHLGDSSFPVSAGSGGQWGANTSTSGVYAACMKLREMIASAVGFDPEQ
SQFADGKITNGTRSATLHEATAGGRLTAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATG
EVRVRRMLAVCAAGRILNPKTARSQVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYE
VPVHADIPKQEVIFLDDTDPISSPMKAKGVGELGLCGVSAAIANAVYNATGIRVRDYPIT
LDKLLDKLPDVV
>gi|223713553|gb|ACDM01000045.1| GENE    49     52721  -     53677    507    318 aa, chain + ## HITS:1  COG:yagQ KEGG:ns NR:ns ## COG: yagQ COG1975 # Protein_GI_number: 16128268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 1     318       1     318     318     613  100.0  1e-175
MSYPLFDKDEHWHKPEQAFLTDDHRTILRFAVEALMSGKGAVLVTLVEIRGGAARPLGAQ
MVVREDGRYCGFVSGGCVEAAAAFEALEMMGSGRDREIRYGEGSPWFDIVLPCGGGITLT
LHKLRSAQPLLAVLNRLEQRKPVGLRYDPQAQSLVCLPTQTRTGWNLNGFEVGFRPCVRL
MIYGRSLEAQATASLAAATGYDSHIFDLFPASASAQIDTDTAVILLCHDLNRELPVLQAA
REAKPFYLGALGSYRTHTLRLQKLHELGWSREETTQIRAPVGIFPKARDAHTLALSVLAE
VASVRLHQEEDSCLPPSS
>gi|223713553|gb|ACDM01000045.1| GENE    50     53656  -     54066    309    136 aa, chain + ## HITS:1  COG:yagP KEGG:ns NR:ns ## COG: yagP COG0583 # Protein_GI_number: 16128267 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     136       1     136     136     251   99.0  2e-67
MPAPVVLILAAGRGERFLASGGNTHKCIGWRQSPEVAPYRWPFEENGRTFDLAIEPQITT
NDLRLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPK
LRALIDYVKEWRQQLA
>gi|223713553|gb|ACDM01000045.1| GENE    51     54501  -     54686     76     61 aa, chain + ## HITS:1  COG:Z0322 KEGG:ns NR:ns ## COG: Z0322 COG2801 # Protein_GI_number: 15799963 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1      61      61     121     121     113   95.0  7e-26
MAERLVKTMKEDYIAFMPKPNIRTALHNLAVAIEHYNENHPHSALGYRSPREYRRQRVTL
T
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:04:03 2011
 Seq name: gi|223713552|gb|ACDM01000046.1| Escherichia sp. 4_1_40B cont1.46, whole genome shotgun sequence 
 Length of sequence - 976 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       309 -       353    6.2 
     1     1 Tu  1     .       -    CDS        356 -       910    396  ## COG1961 Site-specific recombinases, DNA invertase Pin homologs
Predicted protein(s)
>gi|223713552|gb|ACDM01000046.1| GENE     1       356  -       910    396    184 aa, chain - ## HITS:1  COG:ECs0284 KEGG:ns NR:ns ## COG: ECs0284 COG1961 # Protein_GI_number: 15829538 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli O157:H7 # 1     184       1     184     184     356   97.0  2e-98
MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVV
WKLDRLGRSMRHLVILVEELRERGVNFRSLTDAIDTSTPMGRFFFHVMGALAEMERELIV
ERTKAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIASGVPRQKVAIIYDVGISTLYKKFP
VGDK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:04:04 2011
 Seq name: gi|223713551|gb|ACDM01000047.1| Escherichia sp. 4_1_40B cont1.47, whole genome shotgun sequence 
 Length of sequence - 2052 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 1, operones - 1 average op.length -  5.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          1 -       289    239  ## JW1140 hypothetical protein
     2     1 Op  2     .       -    CDS        293 -       736    438  ## ECO103_0525 hypothetical protein
     3     1 Op  3     .       -    CDS        756 -      1145    370  ## COG4570 Holliday junction resolvase
     4     1 Op  4     .       -    CDS       1142 -      1369    218  ## ECIAI39_4864 putative LexA repressor
                               -    Term      1411 -      1454   -0.9 
     5     1 Op  5     .       -    CDS       1468 -      1956    180  ## ECS88_2902 conserved hypothetical protein; CPS-53 (KpLE1) prophage
Predicted protein(s)
>gi|223713551|gb|ACDM01000047.1| GENE     1         1  -       289    239     96 aa, chain - ## HITS:1  COG:no KEGG:JW1140 NR:ns ## KEGG: JW1140 # Name: ycfK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      96       1      96     209     172   98.0  2e-42
MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEK
GRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALEN
>gi|223713551|gb|ACDM01000047.1| GENE     2       293  -       736    438    147 aa, chain - ## HITS:1  COG:no KEGG:ECO103_0525 NR:ns ## KEGG: ECO103_0525 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     137       1     137     269     282  100.0  3e-75
MNNLMVIDGIEVRRDAYGRYSLNDLHRAAVASGANARTKEPGKFLSSQQTVELVHELTNT
QNLGVDPVSVIHGGNERGTYVCKELVYAYAMWISPSFHLKVIRTFDMVTSAPEKLSGQAA
DKMQAGVILLDFMRRELPEPRQALYPE
>gi|223713551|gb|ACDM01000047.1| GENE     3       756  -      1145    370    129 aa, chain - ## HITS:1  COG:ECs2751 KEGG:ns NR:ns ## COG: ECs2751 COG4570 # Protein_GI_number: 15832005 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1     122       3     117     119      87   40.0  8e-18
MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAIVEQLRRLPKPTSAPAS
VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK
YEKTAGAAA
>gi|223713551|gb|ACDM01000047.1| GENE     4      1142  -      1369    218     75 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_4864 NR:ns ## KEGG: ECIAI39_4864 # Name: not_defined # Def: putative LexA repressor # Organism: E.coli_IAI39 # Pathway: not_defined # 1      75      34     108     108     136   98.0  2e-31
MLGYRSVNAAVEHLRALEKKGVITIKRGVARGITLHTAVKDDDSEAVGIIRALLAGEENA
RLRATHWLHERGLKV
>gi|223713551|gb|ACDM01000047.1| GENE     5      1468  -      1956    180    162 aa, chain - ## HITS:1  COG:no KEGG:ECS88_2902 NR:ns ## KEGG: ECS88_2902 # Name: yfdN # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.coli_S88 # Pathway: not_defined # 1     162       3     164     164     280   95.0  2e-74
MSLLNEVQKYIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFP
RLTERAQEAEPQPVRETRPVRNFYVGTNDPREILCLTRQAEELESRGLYRRAATVWMAAF
RESHSQPERNNFLARREQCLRKSSKRAVSSDEWYLSGNYVGA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:04:15 2011
 Seq name: gi|223713550|gb|ACDM01000048.1| Escherichia sp. 4_1_40B cont1.48, whole genome shotgun sequence 
 Length of sequence - 6053 bp
 Number of predicted genes - 11, with homology - 11
 Number of transcription units - 7, operones - 4 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          1 -       592    154  ## SeSA_A4446 phage O protein family
     2     1 Op  2     .       -    CDS        582 -       761    131  ## gi|193066827|ref|ZP_03047826.1| conserved hypothetical protein
                               -    Term       778 -       819    5.1 
     3     2 Op  1     .       -    CDS        937 -      1488    311  ## EFER_0584 putative nucleic acid-binding protein; E14 prophage
     4     2 Op  2     .       -    CDS       1526 -      1726    157  ## SeSA_A4444 hypothetical protein
                               -    Prom      1774 -      1833    3.4 
     5     3 Tu  1     .       +    CDS       1824 -      2450     57  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
                               +    Term      2472 -      2509    3.1 
                               +    Prom      2480 -      2539    5.8 
     6     4 Tu  1     .       +    CDS       2698 -      2904    227  ## EFER_0580 conserved hypothetical protein from phage origin
                               +    Term      2986 -      3022    1.3 
                               -    Term      2757 -      2794    3.0 
     7     5 Tu  1     .       -    CDS       2876 -      3310    156  ## EFER_0579 hypothetical protein from phage origin
                               -    Prom      3335 -      3394    2.5 
                               +    Prom      3582 -      3641    1.8 
     8     6 Op  1     .       +    CDS       3779 -      4141    464  ## EFER_0577 hypothetical protein
     9     6 Op  2     .       +    CDS       4207 -      5031    819  ## COG5532 Uncharacterized conserved protein
                               +    Term      5048 -      5073   -0.5 
    10     7 Op  1     .       +    CDS       5159 -      5695    384  ## COG1896 Predicted hydrolases of HD superfamily
    11     7 Op  2     .       +    CDS       5686 -      6048    209  ## EFER_0574 conserved hypothetical protein; CPS-53 (KpLE1) prophage
Predicted protein(s)
>gi|223713550|gb|ACDM01000048.1| GENE     1         1  -       592    154    197 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A4446 NR:ns ## KEGG: SeSA_A4446 # Name: not_defined # Def: phage O protein family # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1     197       1     187     313     324   94.0  9e-88
MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTA
IARLEAEGWLTRKARRQGNRNASNVYQLNVAKLQAAAFSQLSDSDPSKSDASKSDPSKSD
ASKSDPSKFDASKSGKKAGFHPSESGGDPSVKSKHDPSDKKTSRPDASQPDTQTAEQEFL
TRHPDAVVFSPKKRQWG
>gi|223713550|gb|ACDM01000048.1| GENE     2       582  -       761    131     59 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|193066827|ref|ZP_03047826.1| ## NR: gi|193066827|ref|ZP_03047826.1| conserved hypothetical protein [Escherichia coli E22] # 1      59       1      59      59      97  100.0  2e-19
MRQVNRWFKDHYGVPVRVIRWEPETQRVIYLREGYEHECFSPLEQFRRKFREIEVGHEH
>gi|223713550|gb|ACDM01000048.1| GENE     3       937  -      1488    311    183 aa, chain - ## HITS:1  COG:no KEGG:EFER_0584 NR:ns ## KEGG: EFER_0584 # Name: ymfL # Def: putative nucleic acid-binding protein; E14 prophage # Organism: E.fergusonii # Pathway: not_defined # 1     183      36     218     218     369   98.0  1e-101
MGKHHWKVEKQPEWYVKAVRKTIAALPGGYAEAADWLDVTENALFNRLRADGDQIFPLGW
AMILQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSA
IEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISESNDARECAAPGAVACRDCGE
TNA
>gi|223713550|gb|ACDM01000048.1| GENE     4      1526  -      1726    157     66 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A4444 NR:ns ## KEGG: SeSA_A4444 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1      66       1      66      66     131  100.0  9e-30
MTTDDIESYFGSIEKVAAFFGITTEAVYQWRNRPGQLIPKGRAAEAAYRTCGRLPFKPEL
YEKSNG
>gi|223713550|gb|ACDM01000048.1| GENE     5      1824  -      2450     57    208 aa, chain + ## HITS:1  COG:ECs2766 KEGG:ns NR:ns ## COG: ECs2766 COG1974 # Protein_GI_number: 15832020 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1     208       2     215     215     158   41.0  7e-39
METVGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSID
YILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEVFSEVDKWVDTSLKIGDNSFALE
VKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEATVKKLVIDGPQKFLV
PLNPRYPNIPINGNCLIIGVVKGVQYEL
>gi|223713550|gb|ACDM01000048.1| GENE     6      2698  -      2904    227     68 aa, chain + ## HITS:1  COG:no KEGG:EFER_0580 NR:ns ## KEGG: EFER_0580 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.fergusonii # Pathway: not_defined # 1      68       6      73      73     115  100.0  4e-25
MHKTEPKIVAPGYTNEEIYEWMAKKLAAINQLREVLSYRQETIDSLKKLDQEITVLSQDV
TLDIVQTN
>gi|223713550|gb|ACDM01000048.1| GENE     7      2876  -      3310    156    144 aa, chain - ## HITS:1  COG:no KEGG:EFER_0579 NR:ns ## KEGG: EFER_0579 # Name: not_defined # Def: hypothetical protein from phage origin # Organism: E.fergusonii # Pathway: not_defined # 1     144       1     144     144     258   99.0  3e-68
MSGNIYTLYKSHCENVGKYRGIEISGVVSSVEISKVESRATLLTLLDLVLHEHRKKFGTP
YNQLNGKKALVHLILMKHHWMPKQINEMKFDELLLSIQDEFTLDKISVTAQKFLDYRDWR
SQIHHFDDFDENEWDPNLSAQYLK
>gi|223713550|gb|ACDM01000048.1| GENE     8      3779  -      4141    464    120 aa, chain + ## HITS:1  COG:no KEGG:EFER_0577 NR:ns ## KEGG: EFER_0577 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1     120     107     226     226     234   99.0  9e-61
MASERSTDVHAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRVK
IKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGR
>gi|223713550|gb|ACDM01000048.1| GENE     9      4207  -      5031    819    274 aa, chain + ## HITS:1  COG:yfdQ KEGG:ns NR:ns ## COG: yfdQ COG5532 # Protein_GI_number: 16130292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     274       1     274     274     500   99.0  1e-141
MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALS
TASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFS
ALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAVRKITIEANQTADFED
NDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQ
LEAVQEEMANEFRDLLVEKFKDSKVETFIGTFTA
>gi|223713550|gb|ACDM01000048.1| GENE    10      5159  -      5695    384    178 aa, chain + ## HITS:1  COG:yfdR KEGG:ns NR:ns ## COG: yfdR COG1896 # Protein_GI_number: 16130293 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1     178      10     187     187     366   98.0  1e-101
MSFIKTFSGKHFYYDRINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ
EFAFEALMHDATEAYCQDIPAPLKRLLPDYKQMEEKIDAVIREKYGLPPVMSTPVKYADL
IMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNELSELRKCA
>gi|223713550|gb|ACDM01000048.1| GENE    11      5686  -      6048    209    120 aa, chain + ## HITS:1  COG:no KEGG:EFER_0574 NR:ns ## KEGG: EFER_0574 # Name: yfdS # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.fergusonii # Pathway: not_defined # 1     120       1     120     120     233  100.0  2e-60
MRMNVFEMEGFLRGRCVPRDLKVNETDAEYLVRKFDALEAKCAAQENKVIPVSTELPPAN
ESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:04:43 2011
 Seq name: gi|223713549|gb|ACDM01000049.1| Escherichia sp. 4_1_40B cont1.49, whole genome shotgun sequence 
 Length of sequence - 24251 bp
 Number of predicted genes - 26, with homology - 26
 Number of transcription units - 17, operones - 6 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       593 -       652    2.0 
     1     1 Tu  1     .       +    CDS        680 -      1348    -15  ## COG0582 Integrase
                               -   TRNA       1363 -      1438   91.5  # Thr CGT 0 0
     2     2 Op  1  22/0.000   -    CDS       1553 -      2806   1401  ## COG0014 Gamma-glutamyl phosphate reductase
     3     2 Op  2     .       -    CDS       2818 -      3921   1079  ## COG0263 Glutamate 5-kinase
                               -    Prom      4073 -      4132    8.4 
                               +    Prom      4066 -      4125    5.8 
     4     3 Tu  1     .       +    CDS       4209 -      5264   1069  ## COG3203 Outer membrane protein (porin)
                               +    Term      5272 -      5306    6.0 
                               -    Term      5260 -      5294    5.2 
     5     4 Op  1     .       -    CDS       5303 -      5704    586  ## SSON_0282 DNA-binding transcriptional regulator Crl
     6     4 Op  2   6/0.111   -    CDS       5762 -      7006   1261  ## COG1073 Hydrolases of the alpha/beta superfamily
                               -    Prom      7032 -      7091    3.4 
                               -    Term      7053 -      7091    9.1 
     7     5 Tu  1     .       -    CDS       7098 -      7556    615  ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins
                               -    Prom      7616 -      7675    3.2 
                               +    Prom      7666 -      7725    3.6 
     8     6 Tu  1     .       +    CDS       7817 -      9274   1845  ## COG2195 Di- and tripeptidases
                               +    Term      9287 -      9330    8.3 
                               -    Term      9046 -      9089    2.4 
     9     7 Op  1   5/0.222   -    CDS       9331 -      9831    254  ## COG1186 Protein chain release factor B
    10     7 Op  2   2/1.000   -    CDS       9800 -     10066    134  ## COG1690 Uncharacterized conserved protein
                               -    Prom     10193 -     10252    9.0 
    11     8 Op  1     .       -    CDS      10372 -     10746    226  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
    12     8 Op  2     .       -    CDS      10834 -     11232    344  ## JW0223 predicted toxin of the YafO-YafN toxin-antitoxin system
    13     8 Op  3   3/0.667   -    CDS      11235 -     11528    203  ## COG2161 Antitoxin of toxin-antitoxin stability system
    14     8 Op  4   2/1.000   -    CDS      11580 -     12635   1085  ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair
    15     8 Op  5     .       -    CDS      12706 -     13476    766  ## COG1360 Flagellar motor protein
                               +    Prom     13327 -     13386    1.8 
    16     9 Tu  1     .       +    CDS      13436 -     15175   1834  ## COG1298 Flagellar biosynthesis pathway, component FlhA
                               -    Term     15306 -     15347    1.0 
    17    10 Op  1   3/0.667   -    CDS      15399 -     15896    115  ## COG1943 Transposase and inactivated derivatives
                               -    Prom     15991 -     16050    2.0 
    18    10 Op  2     .       -    CDS      16072 -     16881    212  ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins)
                               -    Prom     16901 -     16960    8.3 
                               +    Prom     16941 -     17000    7.8 
    19    11 Op  1   9/0.000   +    CDS      17031 -     17291    395  ## COG3077 DNA-damage-inducible protein J
    20    11 Op  2   3/0.667   +    CDS      17294 -     17572    107  ## COG3041 Uncharacterized protein conserved in bacteria
                               +    Prom     17588 -     17647    3.0 
    21    12 Tu  1     .       +    CDS      17728 -     18468    866  ## COG3034 Uncharacterized protein conserved in bacteria
                               +    Term     18479 -     18512    2.1 
                               -    Term     18338 -     18394    6.0 
    22    13 Tu  1   6/0.111   -    CDS      18439 -     19206    582  ## COG0121 Predicted glutamine amidotransferase
                               -    Prom     19320 -     19379    2.5 
                               -    Term     19325 -     19389    3.8 
    23    14 Tu  1     .       -    CDS      19412 -     19990    792  ## COG0279 Phosphoheptose isomerase
                               -    Prom     20022 -     20081    4.2 
                               +    Prom     20084 -     20143    3.2 
    24    15 Tu  1     .       +    CDS      20230 -     22674   3133  ## COG1960 Acyl-CoA dehydrogenases
                               +    Term     22683 -     22713    3.0 
                               -    Term     22670 -     22700    3.0 
    25    16 Tu  1     .       -    CDS      22717 -     23190    577  ## EC55989_0244 C-lysozyme inhibitor
                               -    Prom     23233 -     23292    3.9 
                               +    Prom     23224 -     23283    6.7 
    26    17 Tu  1     .       +    CDS      23344 -     24114    652  ## COG0388 Predicted amidohydrolase
                               +    Term     24186 -     24221   -0.7 
Predicted protein(s)
>gi|223713549|gb|ACDM01000049.1| GENE     1       680  -      1348    -15    222 aa, chain + ## HITS:1  COG:ECs0271 KEGG:ns NR:ns ## COG: ECs0271 COG0582 # Protein_GI_number: 15829525 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1     222     103     324     324     435   99.0  1e-122
MLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQ
QIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHHWVFVYKESCTKPDGTKA
PTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEM
VRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSKNKEGTNDV
>gi|223713549|gb|ACDM01000049.1| GENE     2      1553  -      2806   1401    417 aa, chain - ## HITS:1  COG:ECs0270 KEGG:ns NR:ns ## COG: ECs0270 COG0014 # Protein_GI_number: 15829524 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Escherichia coli O157:H7 # 1     417       1     417     417     775   98.0  0
MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSE
AMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYE
ARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPD
RALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALK
VIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAK
VVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVD
SSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
>gi|223713549|gb|ACDM01000049.1| GENE     3      2818  -      3921   1079    367 aa, chain - ## HITS:1  COG:ECs0269 KEGG:ns NR:ns ## COG: ECs0269 COG0263 # Protein_GI_number: 15829523 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Escherichia coli O157:H7 # 1     367       1     367     367     692  100.0  0
MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL
GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT
LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR
SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG
VIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGI
KSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVH
RDDMITR
>gi|223713549|gb|ACDM01000049.1| GENE     4      4209  -      5264   1069    351 aa, chain + ## HITS:1  COG:phoE KEGG:ns NR:ns ## COG: phoE COG3203 # Protein_GI_number: 16128227 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1     351       1     351     351     625  100.0  1e-179
MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFG
FKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALY
DVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRD
VKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDAN
NIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDE
DLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF
>gi|223713549|gb|ACDM01000049.1| GENE     5      5303  -      5704    586    133 aa, chain - ## HITS:1  COG:no KEGG:SSON_0282 NR:ns ## KEGG: SSON_0282 # Name: crl # Def: DNA-binding transcriptional regulator Crl # Organism: S.sonnei # Pathway: not_defined # 1     133       1     133     133     266  100.0  2e-70
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL
EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP
ADDFRDEPVKLTA
>gi|223713549|gb|ACDM01000049.1| GENE     6      5762  -      7006   1261    414 aa, chain - ## HITS:1  COG:yafA KEGG:ns NR:ns ## COG: yafA COG1073 # Protein_GI_number: 16128225 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1     414       1     414     414     870  100.0  0
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRG
IDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEDDPQL
SGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAP
ITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWK
LTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVV
HTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLS
GYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC
>gi|223713549|gb|ACDM01000049.1| GENE     7      7098  -      7556    615    152 aa, chain - ## HITS:1  COG:ECs0265 KEGG:ns NR:ns ## COG: ECs0265 COG0503 # Protein_GI_number: 15829519 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Escherichia coli O157:H7 # 1     152       1     152     152     306  100.0  8e-84
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCI
SSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRP
LVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR
>gi|223713549|gb|ACDM01000049.1| GENE     8      7817  -      9274   1845    485 aa, chain + ## HITS:1  COG:pepD KEGG:ns NR:ns ## COG: pepD COG2195 # Protein_GI_number: 16128223 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli K12 # 1     485       1     485     485     988  100.0  0
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKP
ATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGM
ASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQGNWLQADILINTDSEEEGEIYMGC
AGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE
ELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDVLKSLVNTYQEILKNELAEKEKNLAL
LLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEI
HCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFN
KTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLK
EIPAK
>gi|223713549|gb|ACDM01000049.1| GENE     9      9331  -      9831    254    166 aa, chain - ## HITS:1  COG:prfH KEGG:ns NR:ns ## COG: prfH COG1186 # Protein_GI_number: 16128222 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli K12 # 1     166       1     166     166     315  100.0  3e-86
MLETETGRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRF
TADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLAR
LLIAWKLEQQQQENSAALKSQRRMFHHQIERGNPRRTFTGMAFIEG
>gi|223713549|gb|ACDM01000049.1| GENE    10      9800  -     10066    134     88 aa, chain - ## HITS:1  COG:ykfJ KEGG:ns NR:ns ## COG: ykfJ COG1690 # Protein_GI_number: 16128221 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1      88       1      88      88     177  100.0  5e-45
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPI
GAAFFSVGRFYPARRRGNGAGNRNGPLL
>gi|223713549|gb|ACDM01000049.1| GENE    11     10372  -     10746    226    124 aa, chain - ## HITS:1  COG:yafP KEGG:ns NR:ns ## COG: yafP COG0454 # Protein_GI_number: 16128220 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1     124      27     150     150     243  100.0  9e-65
MTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPE
YTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRY
KPQH
>gi|223713549|gb|ACDM01000049.1| GENE    12     10834  -     11232    344    132 aa, chain - ## HITS:1  COG:no KEGG:JW0223 NR:ns ## KEGG: JW0223 # Name: yafO # Def: predicted toxin of the YafO-YafN toxin-antitoxin system # Organism: E.coli_J # Pathway: not_defined # 1     132       1     132     132     266  100.0  2e-70
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAH
IHLANENNPFPPQLRQFSRTNDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHK
IGKMAEAFRMRF
>gi|223713549|gb|ACDM01000049.1| GENE    13     11235  -     11528    203     97 aa, chain - ## HITS:1  COG:yafN KEGG:ns NR:ns ## COG: yafN COG2161 # Protein_GI_number: 16128218 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Escherichia coli K12 # 1      97       1      97      97     166  100.0  7e-42
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKK
PIKARFRPSAARLEEITRRAEQYLNDMTDDDFNDFKE
>gi|223713549|gb|ACDM01000049.1| GENE    14     11580  -     12635   1085    351 aa, chain - ## HITS:1  COG:dinP KEGG:ns NR:ns ## COG: dinP COG0389 # Protein_GI_number: 16128217 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1     351       1     351     351     714  100.0  0
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG
MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT
LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK
IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR
KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ
EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>gi|223713549|gb|ACDM01000049.1| GENE    15     12706  -     13476    766    256 aa, chain - ## HITS:1  COG:mbhA KEGG:ns NR:ns ## COG: mbhA COG1360 # Protein_GI_number: 16128216 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Escherichia coli K12 # 1     256       6     261     261     476   99.0  1e-134
MIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVN
EKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGS
AKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEE
AGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQP
LVQKLDKQQVLSQRTR
>gi|223713549|gb|ACDM01000049.1| GENE    16     13436  -     15175   1834    579 aa, chain + ## HITS:1  COG:fhiA KEGG:ns NR:ns ## COG: fhiA COG1298 # Protein_GI_number: 16128215 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli K12 # 1     579       1     579     579    1099  100.0  0
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT
RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV
LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA
VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL
IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA
IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY
QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV
YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT
LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP
PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>gi|223713549|gb|ACDM01000049.1| GENE    17     15399  -     15896    115    165 aa, chain - ## HITS:1  COG:yafM KEGG:ns NR:ns ## COG: yafM COG1943 # Protein_GI_number: 16128214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     165       1     165     165     325  100.0  2e-89
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHM
HCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINP
VKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS
>gi|223713549|gb|ACDM01000049.1| GENE    18     16072  -     16881    212    269 aa, chain - ## HITS:1  COG:yafL KEGG:ns NR:ns ## COG: yafL COG0791 # Protein_GI_number: 16128213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Escherichia coli K12 # 21     269       1     249     249     502  100.0  1e-142
MFRNDPGYTATLKHDQPLLSMSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQ
RMQNRARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRW
QALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILE
AKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGE
TIRISRLAEPFWQDHFLGARRILTEETIL
>gi|223713549|gb|ACDM01000049.1| GENE    19     17031  -     17291    395     86 aa, chain + ## HITS:1  COG:dinJ KEGG:ns NR:ns ## COG: dinJ COG3077 # Protein_GI_number: 16128212 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Escherichia coli K12 # 1      86       1      86      86     144  100.0  3e-35
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQ
SIKNSEAGIDVHKAKDADDLFDKLGI
>gi|223713549|gb|ACDM01000049.1| GENE    20     17294  -     17572    107     92 aa, chain + ## HITS:1  COG:yafQ KEGG:ns NR:ns ## COG: yafQ COG3041 # Protein_GI_number: 16128211 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      92       1      92      92     180  100.0  5e-46
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYR
DAHVEPDWILIYKLTDKLLRFERTGTHAALFG
>gi|223713549|gb|ACDM01000049.1| GENE    21     17728  -     18468    866    246 aa, chain + ## HITS:1  COG:ECs0251 KEGG:ns NR:ns ## COG: ECs0251 COG3034 # Protein_GI_number: 15829505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     246       1     246     246     491  100.0  1e-139
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVK
MGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNA
YDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTD
ANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNY
TLPEAK
>gi|223713549|gb|ACDM01000049.1| GENE    22     18439  -     19206    582    255 aa, chain - ## HITS:1  COG:yafJ KEGG:ns NR:ns ## COG: yafJ COG0121 # Protein_GI_number: 16128209 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Escherichia coli K12 # 1     255       1     255     255     548  100.0  1e-156
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPI
AKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETG
NFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGR
YVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKI
MPGEWRLFCLGERVV
>gi|223713549|gb|ACDM01000049.1| GENE    23     19412  -     19990    792    192 aa, chain - ## HITS:1  COG:ECs0249 KEGG:ns NR:ns ## COG: ECs0249 COG0279 # Protein_GI_number: 15829503 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Escherichia coli O157:H7 # 1     192       1     192     192     373  100.0  1e-103
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAM
HFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGIST
SGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIH
ILIQLIEKEMVK
>gi|223713549|gb|ACDM01000049.1| GENE    24     20230  -     22674   3133    814 aa, chain + ## HITS:1  COG:yafH KEGG:ns NR:ns ## COG: yafH COG1960 # Protein_GI_number: 16128207 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli K12 # 1     814      13     826     826    1674  100.0  0
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNF
APMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRL
TAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSA
YAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFAL
TSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEK
LLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAG
QGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARI
AGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQS
NFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLF
KHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGS
LKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLL
QNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHN
PVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAE
ESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA
>gi|223713549|gb|ACDM01000049.1| GENE    25     22717  -     23190    577    157 aa, chain - ## HITS:1  COG:no KEGG:EC55989_0244 NR:ns ## KEGG: EC55989_0244 # Name: ivy # Def: C-lysozyme inhibitor # Organism: E.coli_55989 # Pathway: not_defined # 1     157       1     157     157     292  100.0  2e-78
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWV
MKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQE
KLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>gi|223713549|gb|ACDM01000049.1| GENE    26     23344  -     24114    652    256 aa, chain + ## HITS:1  COG:yafV KEGG:ns NR:ns ## COG: yafV COG0388 # Protein_GI_number: 16128205 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli K12 # 1     256       1     256     256     529  100.0  1e-150
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQD
DVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHY
KAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTAR
AIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY
REKFPAWQDADEFRLW
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:04:58 2011
 Seq name: gi|223713548|gb|ACDM01000050.1| Escherichia sp. 4_1_40B cont1.50, whole genome shotgun sequence 
 Length of sequence - 18653 bp
 Number of predicted genes - 17, with homology - 17
 Number of transcription units - 10, operones - 4 average op.length -  2.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2     .       -    CDS        681 -      4760   1763  ## COG3209 Rhs family protein
     3     2 Op  1   5/0.571   +    CDS       4802 -      6085   1220  ## COG3523 Uncharacterized protein conserved in bacteria
     4     2 Op  2   2/0.857   +    CDS       6096 -      7448   1283  ## COG3515 Uncharacterized protein conserved in bacteria
     5     2 Op  3     .       +    CDS       7472 -      7954    360  ## COG3157 Hemolysin-coregulated protein (uncharacterized)
     6     2 Op  4     .       +    CDS       7998 -      8912    160  ## ECO103_0212 hypothetical protein
     7     2 Op  5     .       +    CDS       8922 -      9401    -42  ## BWG_0204 hypothetical protein
                               +    Term      9448 -      9485   -0.1 
                               -    Term      9271 -      9334    1.9 
     8     3 Tu  1     .       -    CDS       9538 -     10323    587  ## JW0206 predicted aminopeptidase
                               -    Prom     10396 -     10455    8.0 
                               -   TRNA      10651 -     10727   90.7  # Asp GTC 0 0
                               -    Term     10577 -     10627    9.1 
     9     4 Tu  1     .       -    CDS      10860 -     11600    731  ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
                               -    Prom     11636 -     11695    4.3 
                               +    Prom     11574 -     11633    2.1 
    10     5 Tu  1     .       +    CDS      11656 -     12123    484  ## COG0328 Ribonuclease HI
                               +    Term     12134 -     12188    6.0 
    11     6 Tu  1     .       -    CDS      12120 -     12842    447  ## COG0500 SAM-dependent methyltransferases
                               -    Prom     12873 -     12932    3.8 
                               +    Prom     12651 -     12710    2.7 
    12     7 Op  1   8/0.429   +    CDS      12876 -     13631    370  ## COG0491 Zn-dependent hydrolases, including glyoxylases
                               +    Prom     13670 -     13729    1.5 
    13     7 Op  2     .       +    CDS      13841 -     15061    690  ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
                               +    Term     15069 -     15127    7.4 
                               -    Term     15061 -     15107    8.2 
    14     8 Op  1   4/0.714   -    CDS      15109 -     15732    287  ## COG0500 SAM-dependent methyltransferases
    15     8 Op  2     .       -    CDS      15736 -     16515    462  ## COG3021 Uncharacterized protein conserved in bacteria
                               -    Prom     16595 -     16654    5.7 
                               +    Prom     16677 -     16736    4.1 
    16     9 Tu  1     .       +    CDS      16777 -     17691    559  ## COG0583 Transcriptional regulator
                               +    Term     17727 -     17769    7.1 
                               -    Term     17646 -     17679    3.8 
    17    10 Tu  1     .       -    CDS      17688 -     18491   1112  ## COG0656 Aldo/keto reductases, related to diketogulonate reductase
                               -    Prom     18589 -     18648    3.1 
Predicted protein(s)
>gi|223713548|gb|ACDM01000050.1| GENE     1       311  -       703    214    130 aa, chain - ## HITS:1  COG:no KEGG:ECB_00212 NR:ns ## KEGG: ECB_00212 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 13     130       6     123     123     234   99.0  6e-61
MNVLRHVNAINMGVCILIWVIGCANAKVLKRCILPAPDGGVEKLSKPNLHGVIKKVDLNT
NEAEIKIKEGGAVSFIFNEETLYFTVFGGDFIMDDLKKVKNTEAWVWYKNCDSKNKNVAV
ELLQIYELHQ
>gi|223713548|gb|ACDM01000050.1| GENE     2       681  -      4760   1763   1359 aa, chain - ## HITS:1  COG:Z0268 KEGG:ns NR:ns ## COG: Z0268 COG3209 # Protein_GI_number: 15799917 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 EDL933 # 1    1223      49    1270    1404    2187   92.0  0
MNPVLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRD
EGLILNDSGGRSIHFEPLFPGEISYSRSESFWLARGGVATQHSSQPLSALWQVLPEDVRL
SPHAYLAANSLQGPWWILSWPERVPEVDEVLPPEPPAYRVLTGVVDGFGRTLAFHREAAG
ELAGEITRVTDGAGRRFHLALSTQAQRAEAFRKQRESSLSSPAGPRSVSSSSSAFPDTLP
AGTEYGADNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTASGELRAVYDRSGTQVRGFTY
DAEHAGRMVAHHYAGRPESRYRYDDTGRVTEQVNPEGLDYRFEYGERRVIITDSLNRREV
LYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTG
PDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAETSRSGETTSYSYDDPASELP
TGIEDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDWYGQQIAVHREEGISTYSSYNPR
GQLVSQKDAQGRETRYEYSTAGDLTAIIAPDGSRSETQYDAWGKAISTTQGGLTRSMGYD
AAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWH
YDASDRITRRTVNGEPAEQWQYDDHGWLTEISHLSEGHRVAVHYGYDDKGRLTGERQTVE
NPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRD
RLHRETARSFGGEAYELATAWNTSGQLRSRHLNLPQLDRDYDWNDNGQLIRISGPQESRE
YRYSDTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYV
YRHDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDP
LGRRTGKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTIQTGTTRIQTVYQPGSFTPL
LRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRAGAVSAESEAWLAQ
CGLTAEQMAAQMEDAYIPERRLHLYHCDHRGLPQALITPEGETAWCGEYDEWGNQLNEEN
PHHLYQPYRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGINLYTYPLVPIRY
TDPLGLERVISVYGPPAPDRAGAETPLVLTDMTGGVTIYYDPETGDSMTFDSSNRIDRRS
QRGAGDPYTGEVVGCETNESGISAAYGTTKIYTTDTRARWLHGGGSSLRDPYAPRQGWKP
TMGCTRAQNEDVDELCKKVTSWMYSHPGERIRYERFKTR
>gi|223713548|gb|ACDM01000050.1| GENE     3      4802  -      6085   1220    427 aa, chain + ## HITS:1  COG:Z0250 KEGG:ns NR:ns ## COG: Z0250 COG3523 # Protein_GI_number: 15799899 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1     427     718    1144    1144     853   99.0  0
MKYSDADRAEIQRQLTEQYISDYTATWRAGMDNLNIRNFESIGQLTGALEQVISGDQPLQ
RALTVLRDNTQPGVFSEKLSAKEREEALAEPDYQLLTRLGHEFAPENSTLAVQKDKESTM
QAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRW
VGRLTDQAWHVVMVEAVHYMEVDWRDSVVKPFNEQLANNYPFNPRSAQDASLDAFERFFK
PDGILDTFYQQNLKLFIDNDLSLEDGDNNVIIREDIIAQLETAQKIRDIFFSKQNGLGTS
FAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGNAP
RSISFSGPWAQFRLFGAGQLTGVQDGNFTVRFSVDGGAMTYRVHTDTEDNPFSGGLFSQF
GLSDTLY
>gi|223713548|gb|ACDM01000050.1| GENE     4      6096  -      7448   1283    450 aa, chain + ## HITS:1  COG:Z0249 KEGG:ns NR:ns ## COG: Z0249 COG3515 # Protein_GI_number: 15799898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1     440      31     470     499     814   99.0  0
MNSNVLTQTIVTGSDPRWLPEFSAIREEINKASHPSQPELNWKLVESLALAIFKANGVDL
HTATYYTLARTRTQGLAGFCEGAELLAAMVSHDWDKFWPQGGPARTEMLDWFNSRTGNIL
RQQISFAESDLPLIYRTERALQLICDKLQQVELKRVPRVENLLYFMQNTRKRLEPQLKSN
TENAAQTTVRTLIYAPETQASSTPEAVVPPLPGLPEMKVEVRSLTENPPQASVIKQGSTV
RGFIAGIACSVAVASALWWWQVYPVQQQLLQVNDTAQGAATVWMASPELENYERRLQQLL
DTSPVQPLETGMQMMRVADSRWPESLQQQQASTQWNEALKTRAQSSPQLRGWLQTRQDLH
AFADLVMQREKEGLTLSYIKNVIWQAERGLGQETPVESLLTQYHDARAQKQNTDALEKQI
NERLEGVLSRWLLLKNNVMPEAATGTTAEK
>gi|223713548|gb|ACDM01000050.1| GENE     5      7472  -      7954    360    160 aa, chain + ## HITS:1  COG:ECs0216 KEGG:ns NR:ns ## COG: ECs0216 COG3157 # Protein_GI_number: 15829470 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1     159       1     158     159     182   54.0  2e-46
MANISYLSLSGETQGLISAGCSTLDSVGNKAQPEHKDQIMVYALMHSISRSQNVNHHELI
ITKPVDKSSPLLAKALSDNEKMAICEFILYRTSKAGIYQPYYKINLSKARISSIDFVTPH
AVLEKELEPQERIAFIYEDISWEHTLAGTNAMSKWQDRVQ
>gi|223713548|gb|ACDM01000050.1| GENE     6      7998  -      8912    160    304 aa, chain + ## HITS:1  COG:no KEGG:ECO103_0212 NR:ns ## KEGG: ECO103_0212 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     304       1     304     304     629   99.0  1e-179
MAGLRNNNNTQNAQWADYVGDILRGAQPINQLVPQHPYLNDVPLIDELRHQNTHHVIPLT
LDVAKKILSPITSFDYIHFITTHPSGIKDTLAWLVNAGKLMTEFDDNGKIIFNLNALKYT
KASYFEILGEKYIKITTSSPWLLEKLGKYIFSSRAPQVLELAIGWRGTLSESIKGVKFCI
WFSVAWRTIEFIMSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVIL
VGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNT
PPVI
>gi|223713548|gb|ACDM01000050.1| GENE     7      8922  -      9401    -42    159 aa, chain + ## HITS:1  COG:no KEGG:BWG_0204 NR:ns ## KEGG: BWG_0204 # Name: ykfM # Def: hypothetical protein # Organism: E.coli_BW2952 # Pathway: not_defined # 1     159       1     159     159     275  100.0  3e-73
MRLHVKLKEFLSMFFMAILFFPAFNASLFFTGVKPLYSIIKCSTEIFYDWRMLILCFGFM
SFSFLNIHVILLTIIKSFLIKKTKVVNFATDITIQLTLIFLLIAIVIAPLIAPFVTGYVN
TNYHPCGNNTGIFPGAIYIKNGMKCNNGYISRKEDSAVK
>gi|223713548|gb|ACDM01000050.1| GENE     8      9538  -     10323    587    261 aa, chain - ## HITS:1  COG:no KEGG:JW0206 NR:ns ## KEGG: JW0206 # Name: yafT # Def: predicted aminopeptidase # Organism: E.coli_J # Pathway: not_defined # 1     261       1     261     261     492  100.0  1e-138
MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA
VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL
TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS
DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ
IMQLKQKTYKAMVKDLVNRYQ
>gi|223713548|gb|ACDM01000050.1| GENE     9     10860  -     11600    731    246 aa, chain - ## HITS:1  COG:dnaQ KEGG:ns NR:ns ## COG: dnaQ COG0847 # Protein_GI_number: 16128202 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 4     246       1     243     243     487  100.0  1e-137
MTAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRL
VDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRD
IPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLA
MTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGG
SCLWRA
>gi|223713548|gb|ACDM01000050.1| GENE    10     11656  -     12123    484    155 aa, chain + ## HITS:1  COG:ECs0210 KEGG:ns NR:ns ## COG: ECs0210 COG0328 # Protein_GI_number: 15829464 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Escherichia coli O157:H7 # 1     155       1     155     155     314  100.0  5e-86
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK
EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW
VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
>gi|223713548|gb|ACDM01000050.1| GENE    11     12120  -     12842    447    240 aa, chain - ## HITS:1  COG:yafS KEGG:ns NR:ns ## COG: yafS COG0500 # Protein_GI_number: 16128200 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     240       7     246     246     487  100.0  1e-138
MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEAC
AVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDD
GWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLP
WNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA
>gi|223713548|gb|ACDM01000050.1| GENE    12     12876  -     13631    370    251 aa, chain + ## HITS:1  COG:ECs0208 KEGG:ns NR:ns ## COG: ECs0208 COG0491 # Protein_GI_number: 15829462 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Escherichia coli O157:H7 # 1     251       1     251     251     520  100.0  1e-147
MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVG
GVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYFSK
PYLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALPDDTLVCCAHEYTLSNMKFALSILP
HDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLRTEDIDLINVINEETLLQQPEER
FAWLRSKKDRF
>gi|223713548|gb|ACDM01000050.1| GENE    13     13841  -     15061    690    406 aa, chain + ## HITS:1  COG:dniR KEGG:ns NR:ns ## COG: dniR COG0741 # Protein_GI_number: 16128198 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1     406      47     452     452     775  100.0  0
MDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYMYWIA
GQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDV
VASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLPLPQE
TKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISVSKLK
TFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVR
SGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQRLANNSDSITYRVRK
GDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMPDS
>gi|223713548|gb|ACDM01000050.1| GENE    14     15109  -     15732    287    207 aa, chain - ## HITS:1  COG:yafE KEGG:ns NR:ns ## COG: yafE COG0500 # Protein_GI_number: 16128197 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1     207       1     207     207     407  100.0  1e-114
MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADN
AFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALRDT
SHVRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVARMRTPEALVDAIRIYQQSAST
EVRTYFALQNDGFFTSDIIMVDAHKAA
>gi|223713548|gb|ACDM01000050.1| GENE    15     15736  -     16515    462    259 aa, chain - ## HITS:1  COG:ECs0205 KEGG:ns NR:ns ## COG: ECs0205 COG3021 # Protein_GI_number: 15829459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     259       8     266     266     512  100.0  1e-145
MRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYG
KDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLRER
EPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM
AGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVT
RASDHNPLLVEFSPGKPDK
>gi|223713548|gb|ACDM01000050.1| GENE    16     16777  -     17691    559    304 aa, chain + ## HITS:1  COG:yafC KEGG:ns NR:ns ## COG: yafC COG0583 # Protein_GI_number: 16128195 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     304       1     304     304     577  100.0  1e-164
MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT
EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP
EVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPE
TIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLS
DYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPGGA
VREA
>gi|223713548|gb|ACDM01000050.1| GENE    17     17688  -     18491   1112    267 aa, chain - ## HITS:1  COG:yafB KEGG:ns NR:ns ## COG: yafB COG0656 # Protein_GI_number: 16128194 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli K12 # 1     267       1     267     267     512  100.0  1e-145
MAIPAFGLGTFRLKDDVVISSVITALELGYRAIDTAQIYDNEAAVGQAIAESGVPRHELY
ITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQ
GLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQNRKVVAWAKQHGIHITSYMT
LAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTKRKNLESNLKAQNLQLD
AEDKKAIAALDCNDRLVSPEGLAPEWD
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:05:21 2011
 Seq name: gi|223713547|gb|ACDM01000051.1| Escherichia sp. 4_1_40B cont1.51, whole genome shotgun sequence 
 Length of sequence - 31265 bp
 Number of predicted genes - 26, with homology - 26
 Number of transcription units - 11, operones - 8 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +   TRNA          2 -        77   88.7  # Thr GGT 0 0
                               + 5S_RRNA       116 -       237  100.0  # AE006468 [R:3566622..3566743] # 5S ribosomal RNA # Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 #  Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhimurium.
                               -    Term       405 -       436    4.1 
     1     1 Op  1  34/0.000   -    CDS        463 -      1221    532  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
     2     1 Op  2   6/0.500   -    CDS       1229 -      2332    854  ## COG0765 ABC-type amino acid transport system, permease component
     3     1 Op  3   6/0.500   -    CDS       2342 -      3523    891  ## COG4597 ABC-type amino acid transport system, permease component
                               -    Term      3533 -      3583    6.1 
     4     1 Op  4     .       -    CDS       3591 -      4616   1016  ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
                               -    Prom      4861 -      4920    5.4 
                               -    Term      5007 -      5039    4.1 
     5     2 Tu  1     .       -    CDS       5047 -      5268    283  ## ECH74115_4585 putative lipoprotein
                               -    Prom      5445 -      5504    4.7 
                               -    Term      5475 -      5510    3.5 
     6     3 Op  1  27/0.000   -    CDS       5521 -      8625   2983  ## COG0841 Cation/multidrug efflux pump
     7     3 Op  2     .       -    CDS       8637 -      9794    883  ## COG0845 Membrane-fusion protein
                               -    Prom     10039 -     10098    7.3 
                               +    Prom     10011 -     10070    6.9 
     8     4 Tu  1     .       +    CDS      10193 -     10855    431  ## COG1309 Transcriptional regulator
                               +    Term     10889 -     10930    2.3 
                               -    Term     10808 -     10844    0.1 
     9     5 Op  1     .       -    CDS      10858 -     11037    136  ## EcE24377A_3748 hypothetical protein
                               -    Prom     11057 -     11116    1.9 
    10     5 Op  2   1/1.000   -    CDS      11121 -     12005    730  ## COG0863 DNA modification methylase
                               -    Term     12024 -     12061    1.4 
    11     6 Op  1  12/0.500   -    CDS      12091 -     12387    374  ## COG2901 Factor for inversion stimulation Fis, transcriptional activator
    12     6 Op  2   7/0.500   -    CDS      12413 -     13378   1101  ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase
                               -    Prom     13526 -     13585    5.5 
                               -    Term     13599 -     13653   11.8 
    13     7 Op  1   3/1.000   -    CDS      13707 -     14588   1543  ## PROTEIN SUPPORTED gi|15833385|ref|NP_312158.1| ribosomal protein L11 methyltransferase
    14     7 Op  2   4/1.000   -    CDS      14600 -     16051   1650  ## COG4145 Na+/panthothenate symporter
    15     7 Op  3   6/0.500   -    CDS      16041 -     16283    255  ## COG3924 Predicted membrane protein
                               -    Prom     16308 -     16367    5.4 
                               -    Term     16344 -     16372    3.0 
    16     8 Op  1  27/0.000   -    CDS      16392 -     17741   1528  ## COG0439 Biotin carboxylase
    17     8 Op  2     .       -    CDS      17752 -     18222    485  ## COG0511 Biotin carboxyl carrier protein
    18     9 Op  1     .       -    CDS      18999 -     19163     78  ## EcolC_0453 hypothetical protein
    19     9 Op  2     .       -    CDS      19200 -     20174   1171  ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
                               -    Prom     20212 -     20271    3.4 
                               +    Prom     20175 -     20234    3.7 
    20    10 Tu  1     .       +    CDS      20326 -     22266   1225  ## COG2200 FOG: EAL domain
                               +    Prom     22472 -     22531    4.9 
    21    11 Op  1  22/0.000   +    CDS      22571 -     23614   1159  ## COG1077 Actin-like ATPase involved in cell morphogenesis
    22    11 Op  2  19/0.000   +    CDS      23680 -     24783   1126  ## COG1792 Cell shape-determining protein
    23    11 Op  3   7/0.500   +    CDS      24783 -     25271    409  ## COG2891 Cell shape-determining protein
    24    11 Op  4   8/0.500   +    CDS      25280 -     25873    600  ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
    25    11 Op  5   5/1.000   +    CDS      25863 -     27332   1546  ## COG1530 Ribonucleases G and E
    26    11 Op  6     .       +    CDS      27400 -     31200   3230  ## COG3164 Predicted membrane protein
Predicted protein(s)
>gi|223713547|gb|ACDM01000051.1| GENE     1       463  -      1221    532    252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 12     250       1     242     245 209  45 2e-53
MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINH
LEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMP
KKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDP
EMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKS
ERTRAFLSQVIH
>gi|223713547|gb|ACDM01000051.1| GENE     2      1229  -      2332    854    367 aa, chain - ## HITS:1  COG:yhdY KEGG:ns NR:ns ## COG: yhdY COG0765 # Protein_GI_number: 16131158 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1     367       2     368     368     681  100.0  0
MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA
NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP
HRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILL
ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF
KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRF
NTGRTPH
>gi|223713547|gb|ACDM01000051.1| GENE     3      2342  -      3523    891    393 aa, chain - ## HITS:1  COG:ECs4142 KEGG:ns NR:ns ## COG: ECs4142 COG4597 # Protein_GI_number: 15833396 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1     393       7     399     399     698   99.0  0
MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLD
RGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLL
RKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGD
GFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALH
WDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGL
PNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAI
ETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
>gi|223713547|gb|ACDM01000051.1| GENE     4      3591  -      4616   1016    341 aa, chain - ## HITS:1  COG:yhdW KEGG:ns NR:ns ## COG: yhdW COG0834 # Protein_GI_number: 16131156 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 37     341       1     305     305     621   99.0  1e-178
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI
DVDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT
GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK
QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
>gi|223713547|gb|ACDM01000051.1| GENE     5      5047  -      5268    283     73 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_4585 NR:ns ## KEGG: ECH74115_4585 # Name: not_defined # Def: putative lipoprotein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      73       1      73      73     115  100.0  6e-25
MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAA
VAGLTMGIIALSK
>gi|223713547|gb|ACDM01000051.1| GENE     6      5521  -      8625   2983   1034 aa, chain - ## HITS:1  COG:acrF KEGG:ns NR:ns ## COG: acrF COG0841 # Protein_GI_number: 16131154 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1    1034       1    1034    1034    1957  100.0  0
MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT
VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ
EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA
QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF
KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL
DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ
NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL
SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY
LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN
EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG
FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL
EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM
LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM
ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV
MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV
EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF
VPVFFVVIRRCFKG
>gi|223713547|gb|ACDM01000051.1| GENE     7      8637  -      9794    883    385 aa, chain - ## HITS:1  COG:acrE KEGG:ns NR:ns ## COG: acrE COG0845 # Protein_GI_number: 16131153 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1     385       1     385     385     674  100.0  0
MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTN
AYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAI
AHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPIS
GRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT
SNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV
QPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIV
SGLQKARPGEQVKATTDTPADTASK
>gi|223713547|gb|ACDM01000051.1| GENE     8     10193  -     10855    431    220 aa, chain + ## HITS:1  COG:ECs4136 KEGG:ns NR:ns ## COG: ECs4136 COG1309 # Protein_GI_number: 15833390 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     220       1     220     220     426  100.0  1e-119
MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN
EMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFN
DEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWLMN
MAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM
>gi|223713547|gb|ACDM01000051.1| GENE     9     10858  -     11037    136     59 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_3748 NR:ns ## KEGG: EcE24377A_3748 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1      59      10      68      68      87  100.0  2e-16
MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM
>gi|223713547|gb|ACDM01000051.1| GENE    10     11121  -     12005    730    294 aa, chain - ## HITS:1  COG:yhdJ KEGG:ns NR:ns ## COG: yhdJ COG0863 # Protein_GI_number: 16131150 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli K12 # 1     294       3     296     296     611  100.0  1e-175
MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDL
FIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAK
KHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVW
DFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFI
GIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK
>gi|223713547|gb|ACDM01000051.1| GENE    11     12091  -     12387    374     98 aa, chain - ## HITS:1  COG:ECs4133 KEGG:ns NR:ns ## COG: ECs4133 COG2901 # Protein_GI_number: 15833387 # Func_class: K Transcription; L Replication, recombination and repair # Function: Factor for inversion stimulation Fis, transcriptional activator # Organism: Escherichia coli O157:H7 # 1      98       1      98      98     162  100.0  1e-40
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ
PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>gi|223713547|gb|ACDM01000051.1| GENE    12     12413  -     13378   1101    321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1     317      28     344     353 428  65 1e-119
MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH
IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV
VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE
AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY
LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF
NAIEDASEQLEALEAYFENFA
>gi|223713547|gb|ACDM01000051.1| GENE    13     13707  -     14588   1543    293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15833385|ref|NP_312158.1| ribosomal protein L11 methyltransferase [Escherichia coli O157:H7 str. Sakai] # 1     293       1     293     293 598  100 1e-170
MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLF
DAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRD
VPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLG
AAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELA
PLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN
>gi|223713547|gb|ACDM01000051.1| GENE    14     14600  -     16051   1650    483 aa, chain - ## HITS:1  COG:ECs4130 KEGG:ns NR:ns ## COG: ECs4130 COG4145 # Protein_GI_number: 15833384 # Func_class: H Coenzyme transport and metabolism # Function: Na+/panthothenate symporter # Organism: Escherichia coli O157:H7 # 1     483       3     485     485     797  100.0  0
MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMGGIVLAMTLTATYISAS
SFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILARRYNAVTLNDMLFARYQS
RLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYETGLLIFGISIALYTAFGGFRA
SVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVQTLQTIDPQLVTPQGADDILSPAFMT
SFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFGMHLAGALGRAVIPD
LTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMSTINAQLLQSSATIIKDLYLNIRPDQM
QNETRLKRMSAVITLVLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWERA
NAKGALSAMIVGGVLYAVLATLNIQYLGFHPIVPSLLLSLLAFLVGNRFGTSVPQATVLT
TDK
>gi|223713547|gb|ACDM01000051.1| GENE    15     16041  -     16283    255     80 aa, chain - ## HITS:1  COG:yhdT KEGG:ns NR:ns ## COG: yhdT COG3924 # Protein_GI_number: 16131145 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1      80       1      80      80     149  100.0  2e-36
MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGL
CWAMVKFIYRDIPLEDDDAA
>gi|223713547|gb|ACDM01000051.1| GENE    16     16392  -     17741   1528    449 aa, chain - ## HITS:1  COG:ECs4128 KEGG:ns NR:ns ## COG: ECs4128 COG0439 # Protein_GI_number: 15833382 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Escherichia coli O157:H7 # 1     449       1     449     449     882   99.0  0
MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY
LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI
AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ
SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV
EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVT
EMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAP
GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL
QIRIMNDENFQHGGTNIHYLEKKLGLQEK
>gi|223713547|gb|ACDM01000051.1| GENE    17     17752  -     18222    485    156 aa, chain - ## HITS:1  COG:ECs4127 KEGG:ns NR:ns ## COG: ECs4127 COG0511 # Protein_GI_number: 15833381 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     246  100.0  2e-65
MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPMMQQPAQSN
AAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA
MKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE
>gi|223713547|gb|ACDM01000051.1| GENE    18     18999  -     19163     78     54 aa, chain - ## HITS:1  COG:no KEGG:EcolC_0453 NR:ns ## KEGG: EcolC_0453 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1      48       1      48     276     103   97.0  2e-21
MKSLFNRLTGKAVSRTAFVEHLGQEVIQHHPNWKVMISTDHKLMRIDTPLNSYY
>gi|223713547|gb|ACDM01000051.1| GENE    19     19200  -     20174   1171    324 aa, chain - ## HITS:1  COG:ECs4125 KEGG:ns NR:ns ## COG: ECs4125 COG0604 # Protein_GI_number: 15833379 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Escherichia coli O157:H7 # 1     324       1     324     324     638   99.0  0
MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMI
PGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARK
AMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR
ESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAAC
GLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEISL
SEAPNFAEAIINNQIQGRTLVKVN
>gi|223713547|gb|ACDM01000051.1| GENE    20     20326  -     22266   1225    646 aa, chain + ## HITS:1  COG:ECs4124_3 KEGG:ns NR:ns ## COG: ECs4124_3 COG2200 # Protein_GI_number: 15833378 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 # 395     646       1     252     252     499  100.0  1e-141
MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSV
LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
>gi|223713547|gb|ACDM01000051.1| GENE    21     22571  -     23614   1159    347 aa, chain + ## HITS:1  COG:ECs4123 KEGG:ns NR:ns ## COG: ECs4123 COG1077 # Protein_GI_number: 15833377 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Escherichia coli O157:H7 # 1     347      21     367     367     649  100.0  0
MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK
QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ
VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG
VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN
LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL
RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE
>gi|223713547|gb|ACDM01000051.1| GENE    22     23680  -     24783   1126    367 aa, chain + ## HITS:1  COG:ECs4122 KEGG:ns NR:ns ## COG: ECs4122 COG1792 # Protein_GI_number: 15833376 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Escherichia coli O157:H7 # 1     367       1     367     367     592   99.0  1e-169
MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDTAVSPFYFVSNAPRELL
DGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMV
TQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHA
LPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSS
VKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNGANPMTPEEVHRVANERLMQMMPQV
LPSPDAMGPKLPEPATGIAQPTPQQPATGNAATAPAAPTQPAANRSPQRATPPQSGAQPP
ARAPGGQ
>gi|223713547|gb|ACDM01000051.1| GENE    23     24783  -     25271    409    162 aa, chain + ## HITS:1  COG:ECs4121 KEGG:ns NR:ns ## COG: ECs4121 COG2891 # Protein_GI_number: 15833375 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Escherichia coli O157:H7 # 1     162       1     162     162     227  100.0  6e-60
MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF
VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW
AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ
>gi|223713547|gb|ACDM01000051.1| GENE    24     25280  -     25873    600    197 aa, chain + ## HITS:1  COG:yhdE KEGG:ns NR:ns ## COG: yhdE COG0424 # Protein_GI_number: 16131136 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli K12 # 1     197       1     197     197     375  100.0  1e-104
MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQT
AKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLV
VTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYE
LLSNFNALREKRDKHDG
>gi|223713547|gb|ACDM01000051.1| GENE    25     25863  -     27332   1546    489 aa, chain + ## HITS:1  COG:ZcafA KEGG:ns NR:ns ## COG: ZcafA COG1530 # Protein_GI_number: 15803780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Escherichia coli O157:H7 EDL933 # 1     489       7     495     495     917  100.0  0
MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI
GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA
ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE
ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM
TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV
LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV
CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN
QEQFDVVMM
>gi|223713547|gb|ACDM01000051.1| GENE    26     27400  -     31200   3230   1266 aa, chain + ## HITS:1  COG:yhdR+P KEGG:ns NR:ns ## COG: yhdR+P COG3164 # Protein_GI_number: 16132254 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1    1266       1    1266    1266    2518  100.0  0
MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKIESATGMPVEASQLSAS
WQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMRWQFRDLTFWQLRFRTNTP
ITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSGQRAELAIPQLTWLNDPRRHR
AEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQADDIDLKPWLGKWMQDNIALET
AQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQTHTLSVDNLTAHITRENPGWQFSIP
DTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLS
PALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSG
SVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNNNKGFQLDGRNIDVKAKAVHA
RGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMGKDLVDYLSGAIQGGEADNAT
LVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGV
NLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGD
VNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSTLKNLSGKFSFINSDLQSEPLTAS
WFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLP
YHAGATYNIELNGDLKNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFN
SRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAA
SFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIK
YLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISG
DTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSS
FNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRF
DFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVA
PEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQP
RKEKAQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:06:08 2011
 Seq name: gi|223713546|gb|ACDM01000052.1| Escherichia sp. 4_1_40B cont1.52, whole genome shotgun sequence 
 Length of sequence - 114455 bp
 Number of predicted genes - 114, with homology - 114
 Number of transcription units - 55, operones - 27 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         77 -      1522   1790  ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs
                               -    Term      1437 -      1486   -0.5 
     2     2 Tu  1     .       -    CDS       1656 -      2585    842  ## COG0583 Transcriptional regulator
                               -    Prom      2626 -      2685    7.2 
                               +    Prom      2602 -      2661    5.5 
     3     3 Op  1     .       +    CDS       2768 -      2971    112  ## G2583_3962 hypothetical protein
     4     3 Op  2   6/0.154   +    CDS       2979 -      3911   1016  ## COG1566 Multidrug resistance efflux pump
     5     3 Op  3   4/0.538   +    CDS       3917 -      5884   1375  ## COG1289 Predicted membrane protein
                               +    Term      5892 -      5924    3.0 
     6     4 Tu  1     .       +    CDS       5976 -      6248    373  ## COG2732 Barstar, RNAse (barnase) inhibitor
                               -    Term      6246 -      6276    4.1 
     7     5 Tu  1     .       -    CDS       6304 -      6567    349  ## G2583_3958 hypothetical protein
                               -    Prom      6697 -      6756    7.5 
                               -    Term      6888 -      6927    4.7 
     8     6 Tu  1     .       -    CDS       6932 -      7402    550  ## COG1438 Arginine repressor
                               -    Prom      7428 -      7487    5.2 
                               +    Prom      7574 -      7633    4.3 
     9     7 Tu  1     .       +    CDS       7837 -      8775   1320  ## COG0039 Malate/lactate dehydrogenases
                               +    Term      8791 -      8834    8.6 
                               -    Term      8786 -      8815    1.2 
    10     8 Op  1   6/0.154   -    CDS       8838 -      9905   1188  ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
                               -    Prom      9932 -      9991    4.0 
    11     8 Op  2   5/0.308   -    CDS       9995 -     11362   1470  ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
                               -    Prom     11407 -     11466    4.2 
                               -    Term     11473 -     11505    3.8 
    12     9 Tu  1     .       -    CDS      11516 -     11914    537  ## COG3105 Uncharacterized protein conserved in bacteria
                               -    Prom     12028 -     12087    3.3 
                               +    Prom     12159 -     12218    2.2 
    13    10 Tu  1     .       +    CDS      12264 -     13235    792  ## COG1485 Predicted ATPase
                               +    Term     13258 -     13290    3.1 
                               +    Prom     13238 -     13297    5.6 
    14    11 Op  1  59/0.000   +    CDS      13379 -     13882    881  ## PROTEIN SUPPORTED gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13
    15    11 Op  2     .       +    CDS      13898 -     14290    650  ## PROTEIN SUPPORTED gi|15803764|ref|NP_289798.1| 30S ribosomal protein S9
                               +    Term     14329 -     14354   -0.5 
                               -    Term     14374 -     14426    4.8 
    16    12 Tu  1     .       -    CDS      14534 -     14743     72  ## ECP_3312 hypothetical protein
    17    13 Op  1  13/0.000   +    CDS      14685 -     15323    663  ## PROTEIN SUPPORTED gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase
    18    13 Op  2     .       +    CDS      15329 -     15826    514  ## COG2969 Stringent starvation protein B
                               +    Term     15829 -     15868    8.0 
                               -    Term     15815 -     15855    8.2 
    19    14 Tu  1     .       -    CDS      15869 -     17236   1361  ## COG3069 C4-dicarboxylate transporter
                               -    Prom     17339 -     17398    5.7 
                               +    Prom     17393 -     17452    8.8 
    20    15 Tu  1     .       +    CDS      17616 -     18407    917  ## COG2186 Transcriptional regulators
                               +    Prom     18435 -     18494    3.7 
    21    16 Tu  1     .       +    CDS      18529 -     19422    943  ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase
                               +    Prom     19427 -     19486    2.9 
    22    17 Op  1   1/0.962   +    CDS      19531 -     21021   1683  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     21029 -     21060    2.4 
    23    17 Op  2   5/0.308   +    CDS      21069 -     21758    835  ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase
    24    17 Op  3   3/0.885   +    CDS      21755 -     22630    314  ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33
    25    17 Op  4     .       +    CDS      22627 -     23091    411  ## COG2731 Beta-galactosidase, beta subunit
                               -    Term     23101 -     23133    4.9 
    26    18 Tu  1     .       -    CDS      23151 -     24278    542  ## PROTEIN SUPPORTED gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31
                               -    Prom     24375 -     24434    1.8 
    27    19 Op  1     .       -    CDS      24463 -     25179    307  ## JW3188 predicted transcriptional regulator
    28    19 Op  2     .       -    CDS      25176 -     25721    270  ## gi|256024208|ref|ZP_05438073.1| hypothetical protein E4_12593
    29    19 Op  3  10/0.115   -    CDS      25718 -     28099   1109  ## COG3188 P pilus assembly protein, porin PapC
    30    19 Op  4     .       -    CDS      28120 -     28794    378  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom     28905 -     28964    4.2 
                               -    Term     28871 -     28912    4.0 
    31    20 Tu  1     .       -    CDS      28966 -     29730    556  ## JW3181 periplasmic protein
                               -    Prom     29757 -     29816   13.2 
                               -    Term     30183 -     30216   -0.6 
    32    21 Op  1  21/0.000   -    CDS      30290 -     31708   1692  ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases
    33    21 Op  2     .       -    CDS      31721 -     36181   4616  ## COG0069 Glutamate synthase domain 2
                               -    Prom     36351 -     36410    1.9 
    34    22 Op  1   4/0.538   +    CDS      36880 -     37785    934  ## COG1242 Predicted Fe-S oxidoreductase
                               +    Term     37787 -     37830   -0.6 
                               +    Prom     37798 -     37857    3.4 
    35    22 Op  2   2/0.923   +    CDS      37881 -     40217   2781  ## COG0642 Signal transduction histidine kinase
                               +    Prom     40334 -     40393    3.7 
    36    23 Op  1   3/0.885   +    CDS      40447 -     41100    810  ## COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis
    37    23 Op  2     .       +    CDS      41118 -     41825    510  ## COG0744 Membrane carboxypeptidase (penicillin-binding protein)
                               +    Term     42019 -     42059    3.7 
    38    24 Tu  1     .       -    CDS      41822 -     42454    512  ## B21_03023 hypothetical protein
                               -    Prom     42565 -     42624    2.6 
    39    25 Op  1   7/0.154   -    CDS      42668 -     42940    260  ## COG1925 Phosphotransferase system, HPr-related proteins
    40    25 Op  2   8/0.115   -    CDS      42937 -     43791    864  ## COG1660 Predicted P-loop-containing kinase
    41    25 Op  3  11/0.077   -    CDS      43837 -     44328    359  ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
                               -    Term     44381 -     44417    6.4 
    42    26 Op  1  11/0.077   -    CDS      44446 -     44733    458  ## PROTEIN SUPPORTED gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930
    43    26 Op  2  17/0.000   -    CDS      44756 -     46189   1467  ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
    44    26 Op  3  19/0.000   -    CDS      46237 -     46962    287  ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16
    45    26 Op  4  12/0.038   -    CDS      46969 -     47526    582  ## COG1934 Uncharacterized protein conserved in bacteria
    46    26 Op  5  11/0.077   -    CDS      47495 -     48070    394  ## COG3117 Uncharacterized protein conserved in bacteria
    47    26 Op  6  13/0.000   -    CDS      48067 -     48633    738  ## COG1778 Low specificity phosphatase (HAD superfamily)
    48    26 Op  7   6/0.154   -    CDS      48654 -     49640    951  ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation
    49    26 Op  8     .       -    CDS      49654 -     50631    698  ## COG0530 Ca2+/Na+ antiporter
                               -    Prom     50694 -     50753    5.5 
                               +    Prom     50714 -     50773    4.4 
    50    27 Op  1  23/0.000   +    CDS      50841 -     51650    637  ## COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component
    51    27 Op  2  16/0.000   +    CDS      51658 -     52440    802  ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component
    52    27 Op  3  13/0.000   +    CDS      52445 -     52996    653  ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component
    53    27 Op  4  10/0.115   +    CDS      53015 -     53650    878  ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component
    54    27 Op  5   6/0.154   +    CDS      53650 -     53943    344  ## COG3113 Predicted NTP binding protein (contains STAS domain)
                               +    Term     53994 -     54046    6.0 
                               +    Prom     53983 -     54042    1.6 
    55    28 Op  1  11/0.077   +    CDS      54088 -     54357    321  ## COG5007 Predicted transcriptional regulator, BolA superfamily
    56    28 Op  2     .       +    CDS      54412 -     55671   1444  ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase
                               -    Term     55661 -     55715    7.2 
    57    29 Op  1     .       -    CDS      55719 -     55997    298  ## COG3423 Predicted transcriptional regulator
                               -    Prom     56108 -     56167    3.0 
    58    29 Op  2     .       -    CDS      56225 -     57196   1072  ## COG0142 Geranylgeranyl pyrophosphate synthase
                               -    Prom     57270 -     57329    3.2 
                               +    Prom     57330 -     57389    3.6 
    59    30 Op  1  32/0.000   +    CDS      57431 -     57766    562  ## PROTEIN SUPPORTED gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21
    60    30 Op  2   6/0.154   +    CDS      57787 -     58044    437  ## PROTEIN SUPPORTED gi|15803725|ref|NP_289759.1| 50S ribosomal protein L27
                               +    Term     58073 -     58106    6.1 
                               +    Prom     58069 -     58128    3.6 
    61    31 Op  1   6/0.154   +    CDS      58171 -     59136    751  ## PROTEIN SUPPORTED gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily
    62    31 Op  2     .       +    CDS      59152 -     60324   1473  ## COG0536 Predicted GTPase
                               +    Term     60476 -     60514    9.2 
                               -    Term     60462 -     60502    4.9 
    63    32 Tu  1     .       -    CDS      60510 -     61829    932  ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
                               -    Prom     62046 -     62105    3.2 
                               +    Prom     61985 -     62044    5.7 
    64    33 Tu  1     .       +    CDS      62191 -     62667    603  ## COG0782 Transcription elongation factor
                               +    Term     62716 -     62742    1.7 
                               -    Term     62698 -     62737    7.4 
    65    34 Tu  1     .       -    CDS      62823 -     63116    454  ## PROTEIN SUPPORTED gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein
                               -    Prom     63284 -     63343    3.0 
                               +    Prom     63105 -     63164    4.2 
    66    35 Op  1  13/0.000   +    CDS      63242 -     63871    610  ## COG0293 23S rRNA methylase
                               +    Prom     63873 -     63932    4.2 
    67    35 Op  2   7/0.154   +    CDS      63962 -     65905   1683  ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9
                               +    Term     65936 -     65977    9.5 
    68    36 Op  1   9/0.115   +    CDS      65995 -     66843    836  ## COG0294 Dihydropteroate synthase and related enzymes
    69    36 Op  2   7/0.154   +    CDS      66836 -     68173   1604  ## COG1109 Phosphomannomutase
                               +    Term     68197 -     68224   -0.1 
                               +    Prom     68214 -     68273    4.0 
    70    37 Tu  1     .       +    CDS      68401 -     68733    400  ## COG1314 Preprotein translocase subunit SecG
                               +    Term     68842 -     68884    9.2 
                               +   TRNA      68748 -     68834   70.3  # Leu GAG 0 0
                               +    Prom     69192 -     69251    7.3 
    71    38 Tu  1     .       +    CDS      69293 -     70918    396  ## COG2194 Predicted membrane-associated, metal-dependent hydrolase
                               -    Term     70877 -     70918    5.7 
    72    39 Tu  1     .       -    CDS      70926 -     72269   1700  ## COG0137 Argininosuccinate synthase
                               -    Prom     72329 -     72388    3.8 
                               +   TRNA      72617 -     72693   86.1  # Met CAT 0 0
    73    40 Op  1  32/0.000   +    CDS      72930 -     73352    393  ## COG0779 Uncharacterized protein conserved in bacteria
    74    40 Op  2  20/0.000   +    CDS      73380 -     74867   1026  ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA
    75    40 Op  3  32/0.000   +    CDS      74892 -     77564   3171  ## COG0532 Translation initiation factor 2 (IF-2; GTPase)
                               +    Term     77592 -     77650    1.2 
                               +    Prom     77632 -     77691    2.3 
    76    40 Op  4  26/0.000   +    CDS      77728 -     78129    632  ## COG0858 Ribosome-binding factor A
    77    40 Op  5  14/0.000   +    CDS      78129 -     79073   1085  ## COG0130 Pseudouridine synthase
                               +    Term     79166 -     79204   -0.8 
                               +    Prom     79086 -     79145    4.1 
    78    40 Op  6  26/0.000   +    CDS      79222 -     79491    445  ## PROTEIN SUPPORTED gi|16131057|ref|NP_417634.1| 30S ribosomal subunit protein S15
                               +    Term     79513 -     79541    1.3 
    79    40 Op  7   6/0.154   +    CDS      79738 -     81873    188  ## PROTEIN SUPPORTED gi|229537485|ref|ZP_04426621.1| ribosomal protein S1
                               +    Term     81885 -     81918    5.9 
    80    41 Tu  1     .       +    CDS      81982 -     82866    573  ## COG4785 Lipoprotein NlpI, contains TPR repeats
                               +    Term     82902 -     82938    1.3 
                               +    Prom     82961 -     83020    5.7 
    81    42 Tu  1     .       +    CDS      83046 -     84935   2375  ## COG0513 Superfamily II DNA and RNA helicases
                               +    Term     84979 -     85013    3.5 
                               +    Prom     84943 -     85002    7.9 
    82    43 Tu  1     .       +    CDS      85089 -     86333   1641  ## COG0814 Amino acid permeases
                               +    Term     86375 -     86409    0.6 
                               -    Term     86362 -     86397    0.2 
    83    44 Op  1   2/0.923   -    CDS      86451 -     87458    946  ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
    84    44 Op  2  13/0.000   -    CDS      87539 -     88417   1030  ## COG0826 Collagenase and related proteases
    85    44 Op  3     .       -    CDS      88426 -     89421    855  ## COG0826 Collagenase and related proteases
                               -    Prom     89451 -     89510    4.4 
                               +    Prom     89530 -     89589    4.4 
    86    45 Op  1   6/0.154   +    CDS      89630 -     90154    691  ## COG3154 Putative lipid carrier protein
    87    45 Op  2     .       +    CDS      90148 -     90651    683  ## COG3153 Predicted acetyltransferase
                               +    Term     90703 -     90745    1.1 
    88    46 Tu  1     .       -    CDS      90638 -     90940    269  ## COG2827 Predicted endonuclease containing a URI domain
                               -    Prom     90965 -     91024    4.2 
                               +    Prom     90910 -     90969    3.1 
    89    47 Tu  1     .       +    CDS      90991 -     91434    343  ## COG3787 Uncharacterized protein conserved in bacteria
                               +    Term     91472 -     91500    1.4 
    90    48 Tu  1     .       -    CDS      91414 -     91932    608  ## COG0693 Putative intracellular protease/amidase
                               +    Prom     91831 -     91890    2.1 
    91    49 Op  1   2/0.923   +    CDS      92060 -     92695    568  ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases
                               +    Term     92709 -     92761    3.2 
    92    49 Op  2     .       +    CDS      92768 -     93808   1264  ## COG0701 Predicted permeases
                               +    Term     93971 -     94005    2.0 
    93    50 Op  1  11/0.077   -    CDS      93922 -     94497    630  ## COG2823 Predicted periplasmic or secreted lipoprotein
    94    50 Op  2  11/0.077   -    CDS      94507 -     95097    473  ## COG0279 Phosphoheptose isomerase
    95    50 Op  3  10/0.115   -    CDS      95117 -     95512    165  ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase
    96    50 Op  4     .       -    CDS      95470 -     97506   1958  ## COG3107 Putative lipoprotein
                               -    Prom     97694 -     97753    2.7 
                               +    Prom     97474 -     97533    6.5 
    97    51 Tu  1     .       +    CDS      97571 -     98431   1014  ## COG0313 Predicted methyltransferases
                               +    Term     98439 -     98483    8.1 
                               -    Term     98344 -     98370   -0.3 
    98    52 Op  1   6/0.154   -    CDS      98474 -     99565    510  ## COG3539 P pilus assembly protein, pilin FimA
    99    52 Op  2     .       -    CDS      99576 -    101018   1029  ## COG3188 P pilus assembly protein, porin PapC
                               -    Term    101024 -    101073   -0.8 
   100    52 Op  3  10/0.115   -    CDS     101084 -    102091    487  ## COG3188 P pilus assembly protein, porin PapC
   101    52 Op  4   7/0.154   -    CDS     102120 -    102815    383  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Term    102846 -    102887   11.3 
   102    52 Op  5   2/0.923   -    CDS     102895 -    103479    511  ## COG3539 P pilus assembly protein, pilin FimA
                               -    Prom    103541 -    103600    6.4 
                               -    Term    103750 -    103801    7.3 
   103    53 Op  1   2/0.923   -    CDS     103880 -    104581    689  ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
                               -    Term    104592 -    104628    4.7 
   104    53 Op  2  13/0.000   -    CDS     104636 -    105427    887  ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
   105    53 Op  3  13/0.000   -    CDS     105417 -    106220    786  ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
   106    53 Op  4   3/0.885   -    CDS     106259 -    106735    592  ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
                               -    Prom    106771 -    106830    5.8 
   107    54 Op  1   3/0.885   -    CDS     106902 -    107762    918  ## COG0191 Fructose/tagatose bisphosphate aldolase
   108    54 Op  2   9/0.115   -    CDS     107775 -    108929    939  ## COG2222 Predicted phosphosugar isomerases
                               -    Prom    109018 -    109077    6.9 
                               -    Term    109226 -    109261   -0.0 
   109    55 Op  1   3/0.885   -    CDS     109280 -    110413    973  ## COG1820 N-acetylglucosamine-6-phosphate deacetylase
   110    55 Op  2   4/0.538   -    CDS     110410 -    110844    569  ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA
   111    55 Op  3  13/0.000   -    CDS     110862 -    111740   1089  ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
   112    55 Op  4  13/0.000   -    CDS     111730 -    112509   1045  ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
   113    55 Op  5   1/0.962   -    CDS     112520 -    112993    554  ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
   114    55 Op  6     .       -    CDS     113016 -    114296   1325  ## COG4573 Predicted tagatose 6-phosphate kinase
                               -    Prom    114380 -    114439    6.0 
Predicted protein(s)
>gi|223713546|gb|ACDM01000052.1| GENE     1        77  -      1522   1790    481 aa, chain + ## HITS:1  COG:tldD KEGG:ns NR:ns ## COG: tldD COG0312 # Protein_GI_number: 16131134 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Escherichia coli K12 # 1     481       1     481     481     889  100.0  0
MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSY
NIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLY
TSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVR
PLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSA
VAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDG
TMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPM
PRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTK
PVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGT
A
>gi|223713546|gb|ACDM01000052.1| GENE     2      1656  -      2585    842    309 aa, chain - ## HITS:1  COG:ECs4116 KEGG:ns NR:ns ## COG: ECs4116 COG0583 # Protein_GI_number: 15833370 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     309       1     309     309     623  100.0  1e-178
MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTE
AGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPG
LSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEK
PADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVP
LMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQ
EMHGRGKEK
>gi|223713546|gb|ACDM01000052.1| GENE     3      2768  -      2971    112     67 aa, chain + ## HITS:1  COG:no KEGG:G2583_3962 NR:ns ## KEGG: G2583_3962 # Name: aaeX # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      67      24      90      90     103  100.0  3e-21
MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFY
LISRLFV
>gi|223713546|gb|ACDM01000052.1| GENE     4      2979  -      3911   1016    310 aa, chain + ## HITS:1  COG:yhcQ KEGG:ns NR:ns ## COG: yhcQ COG1566 # Protein_GI_number: 16131131 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     310       1     310     310     580  100.0  1e-165
MKTLIRKFSRTAITVVLVILAFIAIFNAWVYYTESPWTRDARFSADVVAIAPDVSGLITQ
VNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQEKRQEAGRRNRLGVQAMS
REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGS
TAVALVKQNSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTR
DDKGMATIDSNLEWVRLAQRVPVRIRLDNQQENIWPAGTTATVVVTGKQDRDESQDSFFR
KMAHRLREFG
>gi|223713546|gb|ACDM01000052.1| GENE     5      3917  -      5884   1375    655 aa, chain + ## HITS:1  COG:yhcP KEGG:ns NR:ns ## COG: yhcP COG1289 # Protein_GI_number: 16131130 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     655       1     655     655    1279   99.0  0
MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYS
GAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIWAGFCTWISSLVRIENSYA
WGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAIMADLLFSPRSIKQEVDREL
ESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQGMRSNLNMESSRWARANRRLKA
INTLSLTLITQSCETYLIQNTRPELITDTFREFFDTPVETAQDVHKQLKRLRRVIAWTGE
RETPVTIYSWVAAATRYQLLKRGVISNTKINATEEEILQGEPEVKVESAERHHAMVNFWR
TTLSCILGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFIYGTLAALPLGLL
YFLVIIPNTQQSMLLLCISLAVLGFFLGIEVQKRRLGSMGALASTINIIVLDNPMTFHFS
QFLDSALGQIVGCVLAFTVILLVRDKSRDRTGRVLLNQFVSAAVSAMTTNVARRKENHLP
ALYQQLFLLMNKFPGDLPKFRLALTMIIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVIS
ARSDDKRRRYFGQLLEELEIYQEKLRIWQAPPQVTEPVNRLAGMLHKYQHALTDS
>gi|223713546|gb|ACDM01000052.1| GENE     6      5976  -      6248    373     90 aa, chain + ## HITS:1  COG:ECs4112 KEGG:ns NR:ns ## COG: ECs4112 COG2732 # Protein_GI_number: 15833366 # Func_class: K Transcription # Function: Barstar, RNAse (barnase) inhibitor # Organism: Escherichia coli O157:H7 # 1      90       1      90      90     158  100.0  3e-39
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLPLEIEFVHLGE
KTRRRFGALILLFDEAEEELEGHLRFNVRH
>gi|223713546|gb|ACDM01000052.1| GENE     7      6304  -      6567    349     87 aa, chain - ## HITS:1  COG:no KEGG:G2583_3958 NR:ns ## KEGG: G2583_3958 # Name: yhcN # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      87      18     104     104     133  100.0  2e-30
MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSGVASSPMDMREMLNKKA
EEKGATAYQITEARSGDTWHATAELYK
>gi|223713546|gb|ACDM01000052.1| GENE     8      6932  -      7402    550    156 aa, chain - ## HITS:1  COG:ECs4110 KEGG:ns NR:ns ## COG: ECs4110 COG1438 # Protein_GI_number: 15833364 # Func_class: K Transcription # Function: Arginine repressor # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     293  100.0  6e-80
MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRN
AKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEG
ILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL
>gi|223713546|gb|ACDM01000052.1| GENE     9      7837  -      8775   1320    312 aa, chain + ## HITS:1  COG:ECs4109 KEGG:ns NR:ns ## COG: ECs4109 COG0039 # Protein_GI_number: 15833363 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Escherichia coli O157:H7 # 1     312       1     312     312     557  100.0  1e-159
MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG
EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP
VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV
TILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVR
ALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLK
KDIALGEEFVNK
>gi|223713546|gb|ACDM01000052.1| GENE    10      8838  -      9905   1188    355 aa, chain - ## HITS:1  COG:ECs4108 KEGG:ns NR:ns ## COG: ECs4108 COG0265 # Protein_GI_number: 15833362 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli O157:H7 # 1     355       1     355     355     645  100.0  0
MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETPASYNLAVRRAAPAVVN
VYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVG
SDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG
LNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQL
ATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQV
NDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN
>gi|223713546|gb|ACDM01000052.1| GENE    11      9995  -     11362   1470    455 aa, chain - ## HITS:1  COG:degQ KEGG:ns NR:ns ## COG: degQ COG0265 # Protein_GI_number: 16131124 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli K12 # 1     455       1     455     455     777  100.0  0
MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEG
TASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQ
LNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQT
ATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV
GIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPG
SGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT
STSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRD
RVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR
>gi|223713546|gb|ACDM01000052.1| GENE    12     11516  -     11914    537    132 aa, chain - ## HITS:1  COG:STM3347 KEGG:ns NR:ns ## COG: STM3347 COG3105 # Protein_GI_number: 16766642 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1     132       3     134     134     229   96.0  9e-61
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSA
ELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEG
ASGLLRTGAKRD
>gi|223713546|gb|ACDM01000052.1| GENE    13     12264  -     13235    792    323 aa, chain + ## HITS:1  COG:ECs4105 KEGG:ns NR:ns ## COG: ECs4105 COG1485 # Protein_GI_number: 15833359 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli O157:H7 # 1     323      53     375     375     661  100.0  0
MARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRV
HEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVA
TSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDET
RAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALS
RLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEF
QRCLSRLQEMQSEEYLKREHLAG
>gi|223713546|gb|ACDM01000052.1| GENE    14     13379  -     13882    881    167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43] # 1     167       1     167     167 343  99 2e-93
MSCEPQQLKTFGCSPTCNYLLGKLLMKTFTAKPETVKRDWYVVDATGKTLGRLATELARR
LRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIAR
RPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
>gi|223713546|gb|ACDM01000052.1| GENE    15     13898  -     14290    650    130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803764|ref|NP_289798.1| 30S ribosomal protein S9 [Escherichia coli O157:H7 EDL933] # 1     130       1     130     130 254  100 1e-66
MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEK
LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRK
ARRRPQFSKR
>gi|223713546|gb|ACDM01000052.1| GENE    16     14534  -     14743     72     69 aa, chain - ## HITS:1  COG:no KEGG:ECP_3312 NR:ns ## KEGG: ECP_3312 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1      69       1      69      69     122   98.0  4e-27
MSVGPENSVITERLLAATAMKTSRYSQNFYCYQPPGGQSEVVLPNKERLSLFENQTKNEQ
YPTFGQKIG
>gi|223713546|gb|ACDM01000052.1| GENE    17     14685  -     15323    663    212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase [Haemophilus influenzae R2866] # 1     203       1     203     212 259  62 3e-68
MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVP
TLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIING
SASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPQLGIEFSGPGA
KELKGYMTRVFERDSFLASLTEAEREMRLGRS
>gi|223713546|gb|ACDM01000052.1| GENE    18     15329  -     15826    514    165 aa, chain + ## HITS:1  COG:ECs4101 KEGG:ns NR:ns ## COG: ECs4101 COG2969 # Protein_GI_number: 15833355 # Func_class: R General function prediction only # Function: Stringent starvation protein B # Organism: Escherichia coli O157:H7 # 1     133       1     133     165     253  100.0  1e-67
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAV
GNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDE
EASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK
>gi|223713546|gb|ACDM01000052.1| GENE    19     15869  -     17236   1361    455 aa, chain - ## HITS:1  COG:dcuD KEGG:ns NR:ns ## COG: dcuD COG3069 # Protein_GI_number: 16131117 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli K12 # 1     455       1     455     455     746  100.0  0
MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVD
IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSAT
YVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIF
AAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVP
PLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMD
DVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALV
IAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVT
SGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
>gi|223713546|gb|ACDM01000052.1| GENE    20     17616  -     18407    917    263 aa, chain + ## HITS:1  COG:nanR KEGG:ns NR:ns ## COG: nanR COG2186 # Protein_GI_number: 16131116 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     263       1     263     263     496  100.0  1e-140
MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERE
LMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIGELSGMAKDFLSHPGG
IAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLA
EIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRA
LQSHLNSVSATWHAFGQTTNKKK
>gi|223713546|gb|ACDM01000052.1| GENE    21     18529  -     19422    943    297 aa, chain + ## HITS:1  COG:ECs4098 KEGG:ns NR:ns ## COG: ECs4098 COG0329 # Protein_GI_number: 15833352 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli O157:H7 # 1     297       1     297     297     595  100.0  1e-170
MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSERE
QVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCD
HYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRRE
HPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECN
KVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQERG
>gi|223713546|gb|ACDM01000052.1| GENE    22     19531  -     21021   1683    496 aa, chain + ## HITS:1  COG:ECs4097 KEGG:ns NR:ns ## COG: ECs4097 COG0477 # Protein_GI_number: 15833351 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     496      11     506     506     919   99.0  0
MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASL
ISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGM
GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIG
ILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFC
FAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPT
YLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFA
IGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPI
IGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSG
AVPFGSAKNDLVKTKS
>gi|223713546|gb|ACDM01000052.1| GENE    23     21069  -     21758    835    229 aa, chain + ## HITS:1  COG:nanE KEGG:ns NR:ns ## COG: nanE COG3010 # Protein_GI_number: 16131113 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Escherichia coli K12 # 1     229       1     229     229     402  100.0  1e-112
MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQAGAVAIRIEGVANLQA
TRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADIIAIDGTDRPRPVPVETLLA
RIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTPETPEEPDLALVKTLSDAGCR
VIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQWYNTAMKKAVL
>gi|223713546|gb|ACDM01000052.1| GENE    24     21755  -     22630    314    291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 6     287       8     314     323 125  30 9e-28
MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVA
IASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGD
ITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASG
RGIAAAAQGELAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDCQCVVVG
GSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGEKL
>gi|223713546|gb|ACDM01000052.1| GENE    25     22627  -     23091    411    154 aa, chain + ## HITS:1  COG:yhcH KEGG:ns NR:ns ## COG: yhcH COG2731 # Protein_GI_number: 16131111 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1     154       1     154     154     285  100.0  3e-77
MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDNIFMNVMTFNTQSPVEK
KAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQLCSTIDNEQAIILKPGMF
AVFMPGEPHKPGCVVGEPGEIKKVVVKVKADLMA
>gi|223713546|gb|ACDM01000052.1| GENE    26     23151  -     24278    542    375 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 [Haemophilus parasuis 29755] # 19     372      12     338     339 213  35 3e-54
MESLSEGTTAGYQQIHDGIIHLVDSARTETVRSVNALMTATYQEIGRRIVEFEQGGEARA
AYGAQLIKRLSKDLCLRYKRGFSAKNLRQMRLFYLFFQHVEIRQTMSGELTPLGIPQTPS
AEFPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYEKETLRCGWSVRQLERQIATQ
FYERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLEFLELKDEYSESDFEEALINHLM
DFMLELGDDFAFVGRQRRLRIDDNWFRVDLLFFHRRLRCLLIVDLKVGKFSYSDAGQMNM
YLNYAKEHWTLPDENPPIGLVLCAEKGAGEAHYALAGLPNTVLASEYKMQLPDEKRLADE
LVRTQAVLEEGYRRR
>gi|223713546|gb|ACDM01000052.1| GENE    27     24463  -     25179    307    238 aa, chain - ## HITS:1  COG:no KEGG:JW3188 NR:ns ## KEGG: JW3188 # Name: yhcF # Def: predicted transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1     238       1     238     238     410  100.0  1e-113
MNNVKLLIAGSAFFAMSAQAADRVSIDVKVTLEAAACTPILSNGGVVNFGSHSVNRLSTQ
HYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSGGQSGVKYTLNGGGYISQTT
RLFGLGKTKDNKNIGSYAVLIDSNNISASNGSQTLAVSIAGADAVITGQKRAWQTLTAYP
LAVDQSYYYTFVKPGETTPTPVTNAIIPLQVSASIANDLGGSEKIELDGKAVISVVYL
>gi|223713546|gb|ACDM01000052.1| GENE    28     25176  -     25721    270    181 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256024208|ref|ZP_05438073.1| ## NR: gi|256024208|ref|ZP_05438073.1| hypothetical protein E4_12593 [Escherichia sp. 4_1_40B] # 1     181       1     181     181     320  100.0  3e-86
MKRIITGCLLLNFAMAAQAECNISSSIQNIDYGKRSAAMRQVDRGKTTQLADRTITLVMQ
CDQDAHIRVQLNTANISNNGFGFGPNGSLNLIASDAFSGSNNLDLALASGKNDNPGSTGT
ASISTSPNNWLVFMQNGQEVVIDSGKSVSLTLTMAPAFKDEGELTDMTDITGNLTVLVEA
K
>gi|223713546|gb|ACDM01000052.1| GENE    29     25718  -     28099   1109    793 aa, chain - ## HITS:1  COG:yhcD KEGG:ns NR:ns ## COG: yhcD COG3188 # Protein_GI_number: 16131106 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     793       1     793     793    1536  100.0  0
MLKKTLLAYTIGFAFSPPANADGIEIAAVDFDRETLKSLGVDPNISHYFSRSARFLPGEY
SLIVSVNGEKKGNIATRFDENGDICLDQAFLQQAGLKIPSEEKNGCYDYILSYPGTTITP
LPNQEALDIIVSPQAIIPIGLDLTNAATGGTAALLNYSLMSSRAEFSNGSSDYSQAALEG
GININDWMLRSHQFLTQTNGTFSNQNSSTYLQRTFTDLKTLMRAGEVNLNNSVLEGASIY
GIEIAPDNALQTSGSGVQVTGIANTSQARVEIRQQGVLIHSILVPAGAFTIPDVPVRNGN
SDLNVTVVETDGSSHNYIVPSTLFNQHVESFQGYRFAIGRVDDDYDESPWVISASSGWNL
TRWSAMNGGVIVAENYQAASIRSSLVPLPDLTVSSQISTSQDTKDSLQGQKYRLDANYNL
PFSLGLTTSLTRSDRHYRELSEAIDDDYTDPTKSTYALGLNWSNSILGGFNISGYKTYSY
DGDNDSSNLNINWNKAFKHATVSVNWQHQLSASENNEDDGDLFYVNISIPFGRSNTATLY
TRHDDHKTHYGTGVMGVVSDEMSYYVNAERDHDERETSLNGSISSNLHYTQVSLAAGASG
SDSRTYNGTMSGGIAVHDQGVTFSPWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGN
AVIPSIQPWRTSGVEIDTASLPKNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITL
SDGKKLPRGVAIEDSEGNYLTTSVDDGVVFLNNIKPDMVLDIKDEQQSCRIHLTFPEDAP
KDVFYETATGECQ
>gi|223713546|gb|ACDM01000052.1| GENE    30     28120  -     28794    378    224 aa, chain - ## HITS:1  COG:yhcA KEGG:ns NR:ns ## COG: yhcA COG3121 # Protein_GI_number: 16131105 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     224       1     224     224     413  100.0  1e-115
MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP
ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV
SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA
INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK
>gi|223713546|gb|ACDM01000052.1| GENE    31     28966  -     29730    556    254 aa, chain - ## HITS:1  COG:no KEGG:JW3181 NR:ns ## KEGG: JW3181 # Name: gltF # Def: periplasmic protein # Organism: E.coli_J # Pathway: not_defined # 1     254       1     254     254     446  100.0  1e-124
MFFKKNLTTAAICAALSVAAFSAMATDSTDTELTIIGEYTPGACTPVVTGGGIVDYGKHH
NSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDT
LVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNGGIHAADDTGEIPVDLIQTDHWSAATP
TWKASSNGAFCSLTSCSAIERGYSVAKTGELTPVAITAVTFPLLIDAAVNDNTILGSDET
IKLDGNVTISVQYL
>gi|223713546|gb|ACDM01000052.1| GENE    32     30290  -     31708   1692    472 aa, chain - ## HITS:1  COG:gltD KEGG:ns NR:ns ## COG: gltD COG0493 # Protein_GI_number: 16131103 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 1     472       1     472     472     975  100.0  0
MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCP
VHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIG
NIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE
IGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVG
TYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAM
DCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVS
GVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQG
RIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV
>gi|223713546|gb|ACDM01000052.1| GENE    33     31721  -     36181   4616   1486 aa, chain - ## HITS:1  COG:ECs4091_2 KEGG:ns NR:ns ## COG: ECs4091_2 COG0069 # Protein_GI_number: 15833345 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Escherichia coli O157:H7 # 379    1194       1     816     816    1647   99.0  0
MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQ
KPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEELQRETLSIVGWRDVP
TNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLEADKDFYVCSLS
NLVNIYKGLCMPTDLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGE
INTITGNRQWARARTYKFQTPLIPDLHDAAPFVNETGSDSSSMDNMLELLLAGGMDIIRA
MRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWDGPAGIVMSDGRFAACNLDRNGLRPAR
YVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGRILHSAETDDDLKSRH
PYKEWMEKNVRRLVPFEDLPDEEVGSRELDDDTLASYQKQFNYSAEELDSVIRVLGENGQ
EAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVF
CEAEGQAHRLSFKSPILLYSDFKQLTTMKEEHYRADTLDITFDVTKTTLEATVKELCDKA
EKMVRSGTVLLVLSDRNIAKDRLPVPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPH
HFAVLLGFGATAIYPYLAYETLGRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGIS
TIASYRCSKLFEAVGLHDDVVGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQ
GGLLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGE
NAVNIADVEPASELFKRFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYG
TNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSV
PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADL
ITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDII
KAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYF
EFIARETRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALY
CTENNPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQG
LAADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCILGK
TGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLSVDALAIHEEHLRGLITEHVQHTGS
QRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
>gi|223713546|gb|ACDM01000052.1| GENE    34     36880  -     37785    934    301 aa, chain + ## HITS:1  COG:ECs4090 KEGG:ns NR:ns ## COG: ECs4090 COG1242 # Protein_GI_number: 15833344 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1     301       9     309     309     631  100.0  0
MFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHRSIAEQLA
HQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQANIVGLCVGTRPDCVPDAVLD
LLCEYKDQGYEVWLELGLQTAHDKTLHRINRGHDFACYQRTTQLARQRGLKVCSHLIVGL
PGEGQAECLQTLERVVETGVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEM
IRHTPPEVIYHRISASARRPTLLAPLWCENRWTGMVELDRYLNEHGVQGSALGRPWLPPT
E
>gi|223713546|gb|ACDM01000052.1| GENE    35     37881  -     40217   2781    778 aa, chain + ## HITS:1  COG:ZarcB_1 KEGG:ns NR:ns ## COG: ZarcB_1 COG0642 # Protein_GI_number: 15803750 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 EDL933 # 1     562       1     562     562    1055  100.0  0
MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIF
FGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKDNIAQLNQEIA
VREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGC
NRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKA
CFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG
IVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTS
FLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQVT
VRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLA
KNMGGDITVTSEQGKGSTFTLTIHAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIV
ARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDL
PPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTMTTEENSK
SEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIK
GAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK
>gi|223713546|gb|ACDM01000052.1| GENE    36     40447  -     41100    810    217 aa, chain + ## HITS:1  COG:yhbL KEGG:ns NR:ns ## COG: yhbL COG3155 # Protein_GI_number: 16131099 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in an early stage of isoprenoid biosynthesis # Organism: Escherichia coli K12 # 1     217       4     220     220     407  100.0  1e-114
MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET
RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL
AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV
DEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE
>gi|223713546|gb|ACDM01000052.1| GENE    37     41118  -     41825    510    235 aa, chain + ## HITS:1  COG:mtgA KEGG:ns NR:ns ## COG: mtgA COG0744 # Protein_GI_number: 16131098 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Escherichia coli K12 # 1     235       8     242     242     457   99.0  1e-129
MFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAVMVERQVSAWLHGNFRYVAHSDWV
SMDQISPWMGLAVIAAEDQKFPEHWGFDVASIEKALAHNERNENRIRGASTISQQTAKNL
FLWDGRSWVRKGLEAGLTLGIETVWSKKRILTVYLNIAEFGDGVFGVEAAAQRYFHKPAS
KLTRSEAALLAAVLPNPLRFKVSSPSGYVRSRQAWILRQMYQLGGEPFMQQHQLD
>gi|223713546|gb|ACDM01000052.1| GENE    38     41822  -     42454    512    210 aa, chain - ## HITS:1  COG:no KEGG:B21_03023 NR:ns ## KEGG: B21_03023 # Name: yrbL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     210       1     210     210     426  100.0  1e-118
MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLGRRLKDW
SGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCRYEEDIAQLRQLLKQLKRY
LQDNRIVTMSLKPQNILCHRISESEVIPVVCDNIGESTLIPLATWSKWCCLRKQERLWKR
FIAQPALAIALQKDLQPRESKTLALTSREA
>gi|223713546|gb|ACDM01000052.1| GENE    39     42668  -     42940    260     90 aa, chain - ## HITS:1  COG:ECs4085 KEGG:ns NR:ns ## COG: ECs4085 COG1925 # Protein_GI_number: 15833339 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Escherichia coli O157:H7 # 1      90       1      90      90     149  100.0  2e-36
MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEAEANSVIALLMLDSAKG
RQIEVEATGPQEEEALAAVIALFNSGFDED
>gi|223713546|gb|ACDM01000052.1| GENE    40     42937  -     43791    864    284 aa, chain - ## HITS:1  COG:ECs4084 KEGG:ns NR:ns ## COG: ECs4084 COG1660 # Protein_GI_number: 15833338 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Escherichia coli O157:H7 # 1     284       1     284     284     556  100.0  1e-158
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNM
PESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKES
DLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYV
FDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSY
LTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP
>gi|223713546|gb|ACDM01000052.1| GENE    41     43837  -     44328    359    163 aa, chain - ## HITS:1  COG:ptsN KEGG:ns NR:ns ## COG: ptsN COG1762 # Protein_GI_number: 16131094 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1     163       1     163     163     303  100.0  1e-82
MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKM
GSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTH
LHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTPDEA
>gi|223713546|gb|ACDM01000052.1| GENE    42     44446  -     44733    458     95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930 [Citrobacter youngae ATCC 29220] # 1      95       1      95      95 181  93 2e-44
MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE
IHASAEGQDMYAAIDGLIDKLTRQLTKHKDKLKQH
>gi|223713546|gb|ACDM01000052.1| GENE    43     44756  -     46189   1467    477 aa, chain - ## HITS:1  COG:rpoN KEGG:ns NR:ns ## COG: rpoN COG1508 # Protein_GI_number: 16131092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Escherichia coli K12 # 1     477       1     477     477     872  100.0  0
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE
TQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTL
QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLK
RIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN
QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
>gi|223713546|gb|ACDM01000052.1| GENE    44     46237  -     46962    287    241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 2     235       3     233     305 115  31 1e-24
MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI
IIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE
LMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII
EHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFR
L
>gi|223713546|gb|ACDM01000052.1| GENE    45     46969  -     47526    582    185 aa, chain - ## HITS:1  COG:ECs4079 KEGG:ns NR:ns ## COG: ECs4079 COG1934 # Protein_GI_number: 15833333 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     185       1     185     185     330  100.0  1e-90
MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIV
TQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDF
VVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPA
QKKGN
>gi|223713546|gb|ACDM01000052.1| GENE    46     47495  -     48070    394    191 aa, chain - ## HITS:1  COG:ECs4078 KEGG:ns NR:ns ## COG: ECs4078 COG3117 # Protein_GI_number: 15833332 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     191       1     191     191     354  100.0  7e-98
MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY
RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL
VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
SYEIQNKQTQP
>gi|223713546|gb|ACDM01000052.1| GENE    47     48067  -     48633    738    188 aa, chain - ## HITS:1  COG:ECs4077 KEGG:ns NR:ns ## COG: ECs4077 COG1778 # Protein_GI_number: 15833331 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1     188       1     188     188     355  100.0  3e-98
MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGY
GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENV
AYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL
DEAKGQSI
>gi|223713546|gb|ACDM01000052.1| GENE    48     48654  -     49640    951    328 aa, chain - ## HITS:1  COG:yrbH_1 KEGG:ns NR:ns ## COG: yrbH_1 COG0794 # Protein_GI_number: 16131087 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 1     212       1     212     212     424  100.0  1e-118
MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKS
GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLK
RLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLK
ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMT
VICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSR
HITSVMVADGDHLLGVLHMHDLLRAGVV
>gi|223713546|gb|ACDM01000052.1| GENE    49     49654  -     50631    698    325 aa, chain - ## HITS:1  COG:yrbG KEGG:ns NR:ns ## COG: yrbG COG0530 # Protein_GI_number: 16131086 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/Na+ antiporter # Organism: Escherichia coli K12 # 1     325       1     325     325     482  100.0  1e-136
MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAA
SLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLY
DGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLG
IALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIA
VGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRG
VGVLLTGGFIVWLAMLYWLSPILVE
>gi|223713546|gb|ACDM01000052.1| GENE    50     50841  -     51650    637    269 aa, chain + ## HITS:1  COG:ECs4074 KEGG:ns NR:ns ## COG: ECs4074 COG1127 # Protein_GI_number: 15833328 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, ATPase component # Organism: Escherichia coli O157:H7 # 1     269       1     269     269     505  100.0  1e-143
MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP
DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL
LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM
GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRV
RQFLDGIADGPVPFRYPAGDYHADLLPGS
>gi|223713546|gb|ACDM01000052.1| GENE    51     51658  -     52440    802    260 aa, chain + ## HITS:1  COG:ECs4073 KEGG:ns NR:ns ## COG: ECs4073 COG0767 # Protein_GI_number: 15833327 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Escherichia coli O157:H7 # 1     260       1     260     260     438  100.0  1e-123
MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIV
VSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEI
GLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGI
DSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVV
HSSLAVLGLDFVLTALMFGN
>gi|223713546|gb|ACDM01000052.1| GENE    52     52445  -     52996    653    183 aa, chain + ## HITS:1  COG:ECs4072 KEGG:ns NR:ns ## COG: ECs4072 COG1463 # Protein_GI_number: 15833326 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Escherichia coli O157:H7 # 1     183       1     183     183     335  100.0  3e-92
MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSI
GGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFED
PELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVG
TTK
>gi|223713546|gb|ACDM01000052.1| GENE    53     53015  -     53650    878    211 aa, chain + ## HITS:1  COG:yrbC KEGG:ns NR:ns ## COG: yrbC COG2854 # Protein_GI_number: 16131082 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Escherichia coli K12 # 1     211       1     211     211     394  100.0  1e-109
MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIV
DQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIA
PEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQNE
WGTLLRTKGIDGLTAQLKSISQQKITLEEKK
>gi|223713546|gb|ACDM01000052.1| GENE    54     53650  -     53943    344     97 aa, chain + ## HITS:1  COG:yrbB KEGG:ns NR:ns ## COG: yrbB COG3113 # Protein_GI_number: 16131081 # Func_class: R General function prediction only # Function: Predicted NTP binding protein (contains STAS domain) # Organism: Escherichia coli K12 # 1      97      33     129     129     170  100.0  6e-43
MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDLSRVSRVDTGGLALLLH
LIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR
>gi|223713546|gb|ACDM01000052.1| GENE    55     54088  -     54357    321     89 aa, chain + ## HITS:1  COG:ECs4069 KEGG:ns NR:ns ## COG: ECs4069 COG5007 # Protein_GI_number: 15833323 # Func_class: K Transcription # Function: Predicted transcriptional regulator, BolA superfamily # Organism: Escherichia coli O157:H7 # 1      89       1      89      89     179  100.0  1e-45
MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME
YIADNRIHAVSIKAYTPAEWARDRKLNGF
>gi|223713546|gb|ACDM01000052.1| GENE    56     54412  -     55671   1444    419 aa, chain + ## HITS:1  COG:murA KEGG:ns NR:ns ## COG: murA COG0766 # Protein_GI_number: 16131079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Escherichia coli K12 # 1     419       1     419     419     812  100.0  0
MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQL
GAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGAR
PVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTT
IIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLV
AAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHP
AFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKL
SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
>gi|223713546|gb|ACDM01000052.1| GENE    57     55719  -     55997    298     92 aa, chain - ## HITS:1  COG:Znlp KEGG:ns NR:ns ## COG: Znlp COG3423 # Protein_GI_number: 15803728 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 1      92       1      92      92     174  100.0  4e-44
MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD
PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK
>gi|223713546|gb|ACDM01000052.1| GENE    58     56225  -     57196   1072    323 aa, chain - ## HITS:1  COG:ispB KEGG:ns NR:ns ## COG: ispB COG0142 # Protein_GI_number: 16131077 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Escherichia coli K12 # 1     323       1     323     323     624  100.0  1e-179
MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVG
YEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAF
QMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQ
CSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPL
LHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQ
VLPDTPWREALIGLAHIAVQRDR
>gi|223713546|gb|ACDM01000052.1| GENE    59     57431  -     57766    562    111 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] # 1     111       1     111     111 221  97 2e-56
MCAEAEFYMYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVP
FVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA
>gi|223713546|gb|ACDM01000052.1| GENE    60     57787  -     58044    437     85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803725|ref|NP_289759.1| 50S ribosomal protein L27 [Escherichia coli O157:H7 EDL933] # 1      85       1      85      85 172  100 5e-42
MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF
AKADGKVKFEVKGPKNRKFISIEAE
>gi|223713546|gb|ACDM01000052.1| GENE    61     58171  -     59136    751    321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily [Haemophilus influenzae R2866] # 1     303       1     300     306 293  49 2e-78
MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFLMASIGLGAILAVKKRL
PPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQVIGQLSPVGMMVASVFIL
KEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWGVIFGVGAATVWVSYGVAQKV
LLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQLACLIFCGLNTLVGYGALAEAM
ARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFARPMLNLLGYLGAFVVVAGAMYSAIG
HRIWGGLRKHTTVVSQPRAGE
>gi|223713546|gb|ACDM01000052.1| GENE    62     59152  -     60324   1473    390 aa, chain + ## HITS:1  COG:yhbZ KEGG:ns NR:ns ## COG: yhbZ COG0536 # Protein_GI_number: 16131073 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1     390       1     390     390     690  100.0  0
MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWMEADENLNTLIDYR
FEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKG
GWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVS
AAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRV
LLHLIDIDPIDGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAI
AEALGWEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQ
LEEIAEEDDEDWDDDWDEDDEEGVEFIYKR
>gi|223713546|gb|ACDM01000052.1| GENE    63     60510  -     61829    932    439 aa, chain - ## HITS:1  COG:dacB KEGG:ns NR:ns ## COG: dacB COG2027 # Protein_GI_number: 16131072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Escherichia coli K12 # 1     439      39     477     477     882  100.0  0
MVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLK
GDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQ
CFSAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
LDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQT
QVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQ
ILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGS
LQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNR
RIPLVRFESRLYKDIYQNN
>gi|223713546|gb|ACDM01000052.1| GENE    64     62191  -     62667    603    158 aa, chain + ## HITS:1  COG:STM3299 KEGG:ns NR:ns ## COG: STM3299 COG0782 # Protein_GI_number: 16766595 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Salmonella typhimurium LT2 # 1     158       1     158     158     282   96.0  2e-76
MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG
RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI
SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL
>gi|223713546|gb|ACDM01000052.1| GENE    65     62823  -     63116    454     97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Erwinia tasmaniensis Et1/99] # 1      97       1      97      97 179  93 5e-44
MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKT
LIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR
>gi|223713546|gb|ACDM01000052.1| GENE    66     63242  -     63871    610    209 aa, chain + ## HITS:1  COG:ECs4058 KEGG:ns NR:ns ## COG: ECs4058 COG0293 # Protein_GI_number: 15833312 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 23S rRNA methylase # Organism: Escherichia coli O157:H7 # 1     209       1     209     209     409  100.0  1e-114
MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA
APGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV
VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS
LFTKVKVRKPDSSRARSREVYIVATGRKP
>gi|223713546|gb|ACDM01000052.1| GENE    67     63962  -     65905   1683    647 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1     599       1     597     636 652  56 0.0
MSDMAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNNDQVREARINGREIN
VTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWI
FFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRF
QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF
EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT
NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFS
GADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAG
HAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEE
IIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHM
SDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD
VRPPAGWEEPGASNNSGDNGSPKAPRPVDEPRTPNPGNTMSEQLGDK
>gi|223713546|gb|ACDM01000052.1| GENE    68     65995  -     66843    836    282 aa, chain + ## HITS:1  COG:ECs4056 KEGG:ns NR:ns ## COG: ECs4056 COG0294 # Protein_GI_number: 15833310 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Escherichia coli O157:H7 # 1     282      16     297     297     556  100.0  1e-158
MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGE
STRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSL
SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKE
KLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSL
ACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKENKRYE
>gi|223713546|gb|ACDM01000052.1| GENE    69     66836  -     68173   1604    445 aa, chain + ## HITS:1  COG:mrsA KEGG:ns NR:ns ## COG: mrsA COG1109 # Protein_GI_number: 16131066 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli K12 # 1     445       1     445     445     836  100.0  0
MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLES
ALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTK
LPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIEFCKATFPNELSLSELKIVVD
CANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVGATDVRALQARVLAEKADLGIAF
DGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQLRGGAVGTLMSNMGLELALKQLGIP
FARAKVGDRYVLEKMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLAAMARNHMSLH
DLCSGMKMFPQILVNVRYTAGSGDPLEHESVKAVTAEVEAALGNRGRVLLRKSGTEPLIR
VMVEGEDEAQVTEFAHRIADAVKAV
>gi|223713546|gb|ACDM01000052.1| GENE    70     68401  -     68733    400    110 aa, chain + ## HITS:1  COG:ECs4054 KEGG:ns NR:ns ## COG: ECs4054 COG1314 # Protein_GI_number: 15833308 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Escherichia coli O157:H7 # 1     110       1     110     110     185  100.0  2e-47
MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA
TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPN
>gi|223713546|gb|ACDM01000052.1| GENE    71     69293  -     70918    396    541 aa, chain + ## HITS:1  COG:yhbX KEGG:ns NR:ns ## COG: yhbX COG2194 # Protein_GI_number: 16131064 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     541       7     547     547    1092   99.0  0
MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFFVLTILVVKRISSLPLR
LLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDPDEVVKMLGMYIPYLCAFA
FLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQFAYKDAKNKKAFSPYILASR
FATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSL
YGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMA
NQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKL
IVLHLNGSHEPSCSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMY
FADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNY
LINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQ
G
>gi|223713546|gb|ACDM01000052.1| GENE    72     70926  -     72269   1700    447 aa, chain - ## HITS:1  COG:argG KEGG:ns NR:ns ## COG: argG COG0137 # Protein_GI_number: 16131063 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Escherichia coli K12 # 1     447       1     447     447     913  100.0  0
MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRA
MEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE
DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG
FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR
FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL
HIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEV
TLELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLF
GYAKTGLLSSSAASGVPQVENLENKGQ
>gi|223713546|gb|ACDM01000052.1| GENE    73     72930  -     73352    393    140 aa, chain + ## HITS:1  COG:ECs4051 KEGG:ns NR:ns ## COG: ECs4051 COG0779 # Protein_GI_number: 15833305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     140      13     152     152     273  100.0  5e-74
MITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV
AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE
GKDEVFALSNIQKANLVPHF
>gi|223713546|gb|ACDM01000052.1| GENE    74     73380  -     74867   1026    495 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4     482       9     483     537 399  43 1e-110
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR
RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE
AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR
GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE
DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT
KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA
QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA
LIMAARNICWFGDEA
>gi|223713546|gb|ACDM01000052.1| GENE    75     74892  -     77564   3171    890 aa, chain + ## HITS:1  COG:ECs4049 KEGG:ns NR:ns ## COG: ECs4049 COG0532 # Protein_GI_number: 15833303 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Escherichia coli O157:H7 # 1     890       1     890     890    1394  100.0  0
MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLT
LQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREA
EESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEA
AELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAE
DESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQ
KPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEE
MGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGE
AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI
EAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG
IDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCG
FEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGK
FREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI
IGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKA
AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEG
ELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA
>gi|223713546|gb|ACDM01000052.1| GENE    76     77728  -     78129    632    133 aa, chain + ## HITS:1  COG:ECs4048 KEGG:ns NR:ns ## COG: ECs4048 COG0858 # Protein_GI_number: 15833302 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Escherichia coli O157:H7 # 1     133       1     133     133     239  100.0  1e-63
MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDK
DEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHD
EERRVNPDDSKED
>gi|223713546|gb|ACDM01000052.1| GENE    77     78129  -     79073   1085    314 aa, chain + ## HITS:1  COG:ECs4047 KEGG:ns NR:ns ## COG: ECs4047 COG0130 # Protein_GI_number: 15833301 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Escherichia coli O157:H7 # 1     314       1     314     314     615  100.0  1e-176
MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE
QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI
RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL
LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE
GRVAPRRLVVEYPA
>gi|223713546|gb|ACDM01000052.1| GENE    78     79222  -     79491    445     89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16131057|ref|NP_417634.1| 30S ribosomal subunit protein S15 [Escherichia coli str. K-12 substr. MG1655] # 1      89       1      89      89 176  100 6e-43
MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV
SQRRKLLDYLKRKDVARYTQLIERLGLRR
>gi|223713546|gb|ACDM01000052.1| GENE    79     79738  -     81873    188    711 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229537485|ref|ZP_04426621.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] # 621     703     433     516     557 77  46 4e-13
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE
>gi|223713546|gb|ACDM01000052.1| GENE    80     81982  -     82866    573    294 aa, chain + ## HITS:1  COG:ECs4044 KEGG:ns NR:ns ## COG: ECs4044 COG4785 # Protein_GI_number: 15833298 # Func_class: R General function prediction only # Function: Lipoprotein NlpI, contains TPR repeats # Organism: Escherichia coli O157:H7 # 1     294       1     294     294     561  100.0  1e-160
MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE
RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD
SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK
QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL
GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>gi|223713546|gb|ACDM01000052.1| GENE    81     83046  -     84935   2375    629 aa, chain + ## HITS:1  COG:ECs4043 KEGG:ns NR:ns ## COG: ECs4043 COG0513 # Protein_GI_number: 15833297 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1     629      18     646     646    1055   99.0  0
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREGRAPRRDDSTGRRRFGGDA
>gi|223713546|gb|ACDM01000052.1| GENE    82     85089  -     86333   1641    414 aa, chain + ## HITS:1  COG:mtr KEGG:ns NR:ns ## COG: mtr COG0814 # Protein_GI_number: 16131053 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1     414       1     414     414     696  100.0  0
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGL
MILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE
MSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATL
FNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALY
TIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLG
VTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPVVGGLLFPNGFLYAIGYAGLAATIWAA
IVPALLARASRKRFGSPKFRVWGGKPMIALILVFGVGNALVHILSSFNLLPVYQ
>gi|223713546|gb|ACDM01000052.1| GENE    83     86451  -     87458    946    335 aa, chain - ## HITS:1  COG:yhbW KEGG:ns NR:ns ## COG: yhbW COG2141 # Protein_GI_number: 16131052 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     335       1     335     335     676  100.0  0
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAAT
SVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRT
MMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLA
AQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFT
SMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILR
ETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
>gi|223713546|gb|ACDM01000052.1| GENE    84     87539  -     88417   1030    292 aa, chain - ## HITS:1  COG:yhbV KEGG:ns NR:ns ## COG: yhbV COG0826 # Protein_GI_number: 16131051 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli K12 # 1     292       7     298     298     600  100.0  1e-171
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGS
GKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYN
AVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARC
FTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGL
VDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>gi|223713546|gb|ACDM01000052.1| GENE    85     88426  -     89421    855    331 aa, chain - ## HITS:1  COG:yhbU KEGG:ns NR:ns ## COG: yhbU COG0826 # Protein_GI_number: 16131050 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli K12 # 1     331       1     331     331     678  100.0  0
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA
TNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSS
YLTGESPNTIGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQ
NFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>gi|223713546|gb|ACDM01000052.1| GENE    86     89630  -     90154    691    174 aa, chain + ## HITS:1  COG:ECs4038 KEGG:ns NR:ns ## COG: ECs4038 COG3154 # Protein_GI_number: 15833292 # Func_class: I Lipid transport and metabolism # Function: Putative lipid carrier protein # Organism: Escherichia coli O157:H7 # 1     174       1     174     174     325  100.0  2e-89
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSI
HVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEG
DTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
>gi|223713546|gb|ACDM01000052.1| GENE    87     90148  -     90651    683    167 aa, chain + ## HITS:1  COG:ECs4037 KEGG:ns NR:ns ## COG: ECs4037 COG3153 # Protein_GI_number: 15833291 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli O157:H7 # 1     167       1     167     167     332  100.0  2e-91
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFS
PVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRF
GFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>gi|223713546|gb|ACDM01000052.1| GENE    88     90638  -     90940    269    100 aa, chain - ## HITS:1  COG:yhbQ KEGG:ns NR:ns ## COG: yhbQ COG2827 # Protein_GI_number: 16131047 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Escherichia coli K12 # 1     100       1     100     100     181  100.0  3e-46
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLVFSAPVGDRSLA
LRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>gi|223713546|gb|ACDM01000052.1| GENE    89     90991  -     91434    343    147 aa, chain + ## HITS:1  COG:yhbP KEGG:ns NR:ns ## COG: yhbP COG3787 # Protein_GI_number: 16131046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     147       1     147     147     291  100.0  3e-79
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQ
AAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRL
DEIKFTDNTLGFGKKMIWLRDSGTEQA
>gi|223713546|gb|ACDM01000052.1| GENE    90     91414  -     91932    608    172 aa, chain - ## HITS:1  COG:ECs4034 KEGG:ns NR:ns ## COG: ECs4034 COG0693 # Protein_GI_number: 15833288 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli O157:H7 # 1     172      15     186     186     330  100.0  7e-91
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDE
VTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRK
LTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>gi|223713546|gb|ACDM01000052.1| GENE    91     92060  -     92695    568    211 aa, chain + ## HITS:1  COG:yraR KEGG:ns NR:ns ## COG: yraR COG0702 # Protein_GI_number: 16131044 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1     211      16     226     226     418   99.0  1e-117
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVT
DPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
FYNRVKGEMEEALIAQNWPKLTIARPSMLLGARSKQRMNETLFAPLFRLLPGNWKSIDAR
DVARVMLAESMRPEHEGVTILSSSELRKRAE
>gi|223713546|gb|ACDM01000052.1| GENE    92     92768  -     93808   1264    346 aa, chain + ## HITS:1  COG:yraQ KEGG:ns NR:ns ## COG: yraQ COG0701 # Protein_GI_number: 16131043 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli K12 # 1     346       1     346     346     575  100.0  1e-164
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADA
NPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSL
PGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAG
LVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVL
VLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALA
LLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>gi|223713546|gb|ACDM01000052.1| GENE    93     93922  -     94497    630    191 aa, chain - ## HITS:1  COG:ECs4031 KEGG:ns NR:ns ## COG: ECs4031 COG2823 # Protein_GI_number: 15833285 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Escherichia coli O157:H7 # 1     191       1     191     191     296  100.0  2e-80
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSK
DEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLG
EASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGV
KRVTTAFTFIK
>gi|223713546|gb|ACDM01000052.1| GENE    94     94507  -     95097    473    196 aa, chain - ## HITS:1  COG:ECs4030 KEGG:ns NR:ns ## COG: ECs4030 COG0279 # Protein_GI_number: 15833284 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Escherichia coli O157:H7 # 1     196       1     196     196     370  100.0  1e-103
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFA
ASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG
NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVN
CLCDLIDNTLFPHQDD
>gi|223713546|gb|ACDM01000052.1| GENE    95     95117  -     95512    165    131 aa, chain - ## HITS:1  COG:yraN KEGG:ns NR:ns ## COG: yraN COG0792 # Protein_GI_number: 16131040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Escherichia coli K12 # 1     131       1     131     131     249  100.0  1e-66
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTT
IFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEV
EWIKDAFNDHS
>gi|223713546|gb|ACDM01000052.1| GENE    96     95470  -     97506   1958    678 aa, chain - ## HITS:1  COG:yraM KEGG:ns NR:ns ## COG: yraM COG3107 # Protein_GI_number: 16131039 # Func_class: R General function prediction only # Function: Putative lipoprotein # Organism: Escherichia coli K12 # 1     678       1     678     678    1198  100.0  0
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQN
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQA
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPA
ADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKI
YDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNIC
YFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFG
STSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYI
VATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGN
LPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVI
NRNLSWLQYQQGQVVPVS
>gi|223713546|gb|ACDM01000052.1| GENE    97     97571  -     98431   1014    286 aa, chain + ## HITS:1  COG:ECs4027 KEGG:ns NR:ns ## COG: ECs4027 COG0313 # Protein_GI_number: 15833281 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Escherichia coli O157:H7 # 1     286       1     286     286     533  100.0  1e-151
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINA
RLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLP
GPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLE
DIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEE
DLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>gi|223713546|gb|ACDM01000052.1| GENE    98     98474  -     99565    510    363 aa, chain - ## HITS:1  COG:yraK KEGG:ns NR:ns ## COG: yraK COG3539 # Protein_GI_number: 16131037 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     363       1     363     363     672  100.0  0
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSAT
LSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLNDSLDIKTTLQANDIPGLTT
DQVVSVNTRFTQIKNNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTI
PKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQ
KFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVP
DVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITV
IVR
>gi|223713546|gb|ACDM01000052.1| GENE    99     99576  -    101018   1029    480 aa, chain - ## HITS:1  COG:yraJ KEGG:ns NR:ns ## COG: yraJ COG3188 # Protein_GI_number: 16131036 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     480     359     838     838     895  100.0  0
MMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGI
GIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDG
YFSFNEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVS
GQQWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMR
LDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGG
VVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSV
DTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDD
TGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>gi|223713546|gb|ACDM01000052.1| GENE   100    101084  -    102091    487    335 aa, chain - ## HITS:1  COG:yraJ KEGG:ns NR:ns ## COG: yraJ COG3188 # Protein_GI_number: 16131036 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     319       1     319     838     624   99.0  1e-179
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGI
PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
AIVTIRQNGYVIYQSNVSGVPLKLTISTPLPTAAI
>gi|223713546|gb|ACDM01000052.1| GENE   101    102120  -    102815    383    231 aa, chain - ## HITS:1  COG:yraI KEGG:ns NR:ns ## COG: yraI COG3121 # Protein_GI_number: 16131035 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     231       1     231     231     469  100.0  1e-132
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW
VDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD
DVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLA
VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>gi|223713546|gb|ACDM01000052.1| GENE   102    102895  -    103479    511    194 aa, chain - ## HITS:1  COG:yraH KEGG:ns NR:ns ## COG: yraH COG3539 # Protein_GI_number: 16131034 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     194       1     194     194     374  100.0  1e-104
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFR
NIGERSPKIPFTIPLVNCPMTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAG
IAATGVGIRIDDAESGNIMPLNAMGNDNTVYQIPAESNGIVNVDLIAYYVSTVVPSEITP
GEADAIVNVTLDYR
>gi|223713546|gb|ACDM01000052.1| GENE   103    103880  -    104581    689    233 aa, chain - ## HITS:1  COG:agaI KEGG:ns NR:ns ## COG: agaI COG0363 # Protein_GI_number: 16131033 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 1     233      19     251     251     460   99.0  1e-130
MQTLQQVENYTALSERASEYLLAVIRSKPNAVICLATGATPLLTYHYLVEKIHQQQVDVS
QLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLI
ARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITL
GLKDILNAREVLLLVTGEGKQDATDRFLTAKVSTAIPASFLWLHSNFICLINT
>gi|223713546|gb|ACDM01000052.1| GENE   104    104636  -    105427    887    263 aa, chain - ## HITS:1  COG:agaD KEGG:ns NR:ns ## COG: agaD COG3716 # Protein_GI_number: 16131032 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli K12 # 1     263       1     263     263     506  100.0  1e-143
MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDN
LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG
ICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL
GITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKK
AHPVLLIGVTFVLSIVCSAFGIL
>gi|223713546|gb|ACDM01000052.1| GENE   105    105417  -    106220    786    267 aa, chain - ## HITS:1  COG:agaC KEGG:ns NR:ns ## COG: agaC COG3715 # Protein_GI_number: 16131031 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli K12 # 1     267       1     267     267     479  100.0  1e-135
MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAILGDIQTGLITGGLTELA
FAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSL
FMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTH
GFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYEF
FNAKSRQQAQPQPVASKNEEEDYSNGI
>gi|223713546|gb|ACDM01000052.1| GENE   106    106259  -    106735    592    158 aa, chain - ## HITS:1  COG:agaB KEGG:ns NR:ns ## COG: agaB COG3444 # Protein_GI_number: 16131030 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1     158       1     158     158     280  100.0  8e-76
MTSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFG
IRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQIS
SKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIPD
>gi|223713546|gb|ACDM01000052.1| GENE   107    106902  -    107762    918    286 aa, chain - ## HITS:1  COG:ECs4017 KEGG:ns NR:ns ## COG: ECs4017 COG0191 # Protein_GI_number: 15833271 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 1     286       1     286     286     574   99.0  1e-164
MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALE
EIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVHSAMIDGSHFPFAENVKLVKSV
VDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH
GLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFA
GAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
>gi|223713546|gb|ACDM01000052.1| GENE   108    107775  -    108929    939    384 aa, chain - ## HITS:1  COG:agaS KEGG:ns NR:ns ## COG: agaS COG2222 # Protein_GI_number: 16131028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Escherichia coli K12 # 1     384       1     384     384     771  100.0  0
MPENYTPAAAATGTWTEEEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTG
AGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPAHPLLLISFGRSGNSPESV
AAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMM
ASCLAVFAPETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAAR
ESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELR
RDNQAMRVIAIAAESSDIVAAGPHIILPPSRHFIDVEQAFCFLMYAQTFALMQSLHMGNT
PDTPSASGTVNRVVQGVIIHPWQA
>gi|223713546|gb|ACDM01000052.1| GENE   109    109280  -    110413    973    377 aa, chain - ## HITS:1  COG:Z4489 KEGG:ns NR:ns ## COG: Z4489 COG1820 # Protein_GI_number: 15803675 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Escherichia coli O157:H7 EDL933 # 1     377       1     377     377     723   98.0  0
MTHVLRARRLLTEEGWLDDHQLRIADGVIAAIEPIPAGVTERDAELLCPAYIDTHVHGGA
GVDVMDDAPDVLDKLAMHKAREGVGSWLPTTVTTPLNTIHAALKRIAQRCQRGGPGAQVL
GSYLEGPYFTPQNKGAHPPELFRELEIAELDQLIAVSQHTLRVVALAPEKEGALQAIRHL
KQQNVRVMLGHSAATWQQTRAAFDAGADGLVHCYNGMTGLHHREPGMVGAGLTDKRAWLE
LIADGHHVHPAAMSLCCCCAKERIVLITDAMQAAGMPDGRYTLCGEEVQMHGGVVRTASG
GLAGSTLSVDAAVRNMVELTGVTPAEAIHMASLHPARMLGVDGVLGSLKPGKRASVVALD
SGLHVQQIWIQGQLASF
>gi|223713546|gb|ACDM01000052.1| GENE   110    110410  -    110844    569    144 aa, chain - ## HITS:1  COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1     144       1     144     144     256  100.0  1e-68
MLSIILTGHGGFASGMEKAMKQILGEQSQFIAIDFPETSSTALLTSQLEEAIAQLDCEDG
IVFLTDLLGGTPFRVASTLAMQKPGCEVITGTNLQLLLEMVLEREGLSGEEFRVQALECG
HRGLTSLVDELGRCHEECPVEEGI
>gi|223713546|gb|ACDM01000052.1| GENE   111    110862  -    111740   1089    292 aa, chain - ## HITS:1  COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1     292       1     292     292     561  100.0  1e-160
MASNQTTLPNVSENEETLLTGVNENVYEDQSIGAELTKKDINRVAWRSMLLQASFNYERM
QASGWLYGLLPALKKIHTNKRDLARAMKGHMGFFNTHPFLVTFVIGIILAMERSKQDVNS
IQSTKIAVGAPLGGIGDAMFWLTLLPICGGIGASLALQGSILGAVVFIVLFNVVHLGLRF
GLAHYAYRMGVAAIPLIKANTKKVGHAASIVGMTVIGALVATYVRLSTTLEITAGDAVVK
LQADVIDKLMPAFLPLVYTLTMFWLVRRGWSPLRLIAVTVVLGIVGKFCHFL
>gi|223713546|gb|ACDM01000052.1| GENE   112    111730  -    112509   1045    259 aa, chain - ## HITS:1  COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1     259       1     259     259     427   99.0  1e-119
MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVW
MGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGV
MSRCDRMAENADTRGIERVNYLALLALGIFYFLCAFLPIYFGAEHAKTIIDVLPQRLIDG
LGVAGGIMPAIGFAVLLKIMMKNVYIPYFILGFVAAAWLKLPVLAIAAAALAMALIDLLR
KSPEPTQPAAQKEEFEDGI
>gi|223713546|gb|ACDM01000052.1| GENE   113    112520  -    112993    554    157 aa, chain - ## HITS:1  COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1     157      13     169     169     305   99.0  3e-83
MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGSAVRF
WTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTV
SVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL
>gi|223713546|gb|ACDM01000052.1| GENE   114    113016  -    114296   1325    426 aa, chain - ## HITS:1  COG:agaZ KEGG:ns NR:ns ## COG: agaZ COG4573 # Protein_GI_number: 16131024 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted tagatose 6-phosphate kinase # Organism: Escherichia coli K12 # 1     426       1     426     426     862  100.0  0
MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYT
GMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAG
FKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPG
GAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQ
PAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSL
AAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPD
SQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYH
TACEGQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:06:40 2011
 Seq name: gi|223713545|gb|ACDM01000053.1| Escherichia sp. 4_1_40B cont1.53, whole genome shotgun sequence 
 Length of sequence - 7834 bp
 Number of predicted genes - 8, with homology - 8
 Number of transcription units - 4, operones - 2 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         35 -       217    159  ## COG1349 Transcriptional regulators of sugar metabolism
                               +    Term       299 -       343   -0.9 
                               -    Term        94 -       136    2.1 
     2     2 Op  1     .       -    CDS        272 -       736    249  ## ECUMN_3612 hypothetical protein
     3     2 Op  2   3/1.000   -    CDS        736 -      1071    260  ## COG2002 Regulators of stationary/sporulation gene expression
                               -    Prom      1100 -      1159    7.6 
                               -    Term      1159 -      1199    2.5 
     4     3 Tu  1     .       -    CDS       1220 -      2791   1315  ## COG2721 Altronate dehydratase
                               -    Prom      2992 -      3051    6.9 
                               +    Prom      3015 -      3074    6.5 
     5     4 Op  1   6/0.000   +    CDS       3166 -      4500   1723  ## COG0477 Permeases of the major facilitator superfamily
     6     4 Op  2   1/1.000   +    CDS       4516 -      5286    814  ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
     7     4 Op  3   1/1.000   +    CDS       5316 -      6206   1201  ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
     8     4 Op  4     .       +    CDS       6303 -      7448   1015  ## COG1929 Glycerate kinase
Predicted protein(s)
>gi|223713545|gb|ACDM01000053.1| GENE     1        35  -       217    159     60 aa, chain + ## HITS:1  COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1      60     210     269     269     111  100.0  3e-25
MCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
>gi|223713545|gb|ACDM01000053.1| GENE     2       272  -       736    249    154 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_3612 NR:ns ## KEGG: ECUMN_3612 # Name: yhaV # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     154       1     154     154     308   99.0  3e-83
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHI
TVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTY
GKKTDAYTVFSKMLKRGHPPADWETLTRETEETH
>gi|223713545|gb|ACDM01000053.1| GENE     3       736  -      1071    260    111 aa, chain - ## HITS:1  COG:sohA KEGG:ns NR:ns ## COG: sohA COG2002 # Protein_GI_number: 16131021 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Escherichia coli K12 # 1     111       1     111     111     216  100.0  8e-57
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDE
QEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE
>gi|223713545|gb|ACDM01000053.1| GENE     4      1220  -      2791   1315    523 aa, chain - ## HITS:1  COG:yhaG KEGG:ns NR:ns ## COG: yhaG COG2721 # Protein_GI_number: 16131020 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1     523       1     523     523    1059  100.0  0
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDI
PANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTF
EGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCG
VAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASI
VSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTAN
PAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGK
TDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDF
VCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEE
TIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
>gi|223713545|gb|ACDM01000053.1| GENE     5      3166  -      4500   1723    444 aa, chain + ## HITS:1  COG:ECs4005 KEGG:ns NR:ns ## COG: ECs4005 COG0477 # Protein_GI_number: 15833259 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     444       1     444     444     828  100.0  0
MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFS
AFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRF
MLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHV
FTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKL
HYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGF
AGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFG
KGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALVFVG
CSALMAMVCYLFVVGDIKRMELQK
>gi|223713545|gb|ACDM01000053.1| GENE     6      4516  -      5286    814    256 aa, chain + ## HITS:1  COG:yhaF KEGG:ns NR:ns ## COG: yhaF COG3836 # Protein_GI_number: 16131018 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Escherichia coli K12 # 1     256       1     256     256     503  100.0  1e-142
MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIP
QLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGI
RGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDL
AAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDL
GVFRSATQKLADTFKK
>gi|223713545|gb|ACDM01000053.1| GENE     7      5316  -      6206   1201    296 aa, chain + ## HITS:1  COG:ECs4003 KEGG:ns NR:ns ## COG: ECs4003 COG2084 # Protein_GI_number: 15833257 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli O157:H7 # 1     296       4     299     299     513  100.0  1e-145
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCD
VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDA
PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA
LNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK
DLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>gi|223713545|gb|ACDM01000053.1| GENE     8      6303  -      7448   1015    381 aa, chain + ## HITS:1  COG:yhaD KEGG:ns NR:ns ## COG: yhaD COG1929 # Protein_GI_number: 16131016 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Escherichia coli K12 # 1     381      28     408     408     674  100.0  0
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGAE
RHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAEKRDPLVTTSRGTGELILQ
ALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNEIGFGGGSLNTLNDIDISGLD
PRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAMIVELDNNLSHYAEVIKKALHVD
VKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSI
HGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYD
NICRASRNIAATLAIGMRNAG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:07:07 2011
 Seq name: gi|223713544|gb|ACDM01000054.1| Escherichia sp. 4_1_40B cont1.54, whole genome shotgun sequence 
 Length of sequence - 81669 bp
 Number of predicted genes - 73, with homology - 73
 Number of transcription units - 41, operones - 19 average op.length -  2.7
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS        283 -      1470    500  ## ECIAI1_3270 hypothetical protein
     2     1 Op  2     .       -    CDS       1492 -      2031     79  ## EcE24377A_3595 hypothetical protein
                               -    Prom      2067 -      2126    3.5 
                               +    Prom      2617 -      2676    8.0 
     3     2 Op  1   4/0.474   +    CDS       2820 -      3758    720  ## COG0583 Transcriptional regulator
                               +    Prom      3767 -      3826    4.9 
     4     2 Op  2   4/0.474   +    CDS       3857 -      4846   1026  ## COG1171 Threonine dehydratase
     5     2 Op  3   3/0.842   +    CDS       4868 -      6199   1440  ## COG0814 Amino acid permeases
     6     2 Op  4   3/0.842   +    CDS       6225 -      7433   1081  ## COG0282 Acetate kinase
     7     2 Op  5   1/0.895   +    CDS       7467 -      9761   2607  ## COG1882 Pyruvate-formate lyase
     8     2 Op  6   1/0.895   +    CDS       9775 -     10164    382  ## COG0251 Putative translation initiation inhibitor, yjgF family
     9     2 Op  7  10/0.158   +    CDS      10236 -     11600   1199  ## COG1760 L-serine deaminase
                               +    Term     11625 -     11654    2.1 
                               +    Prom     11630 -     11689    4.8 
    10     3 Op  1   3/0.842   +    CDS      11875 -     13206   1396  ## COG0814 Amino acid permeases
    11     3 Op  2     .       +    CDS      13234 -     14544   1223  ## COG3681 Uncharacterized conserved protein
                               +    Term     14564 -     14597   -0.5 
    12     4 Op  1     .       -    CDS      14678 -     14842    209  ## EC55989_3525 hypothetical protein
    13     4 Op  2     .       -    CDS      14865 -     15566    656  ## COG1741 Pirin-related protein
                               -    Prom     15624 -     15683    1.7 
    14     5 Tu  1     .       +    CDS      15671 -     16567    918  ## COG0583 Transcriptional regulator
                               +    Term     16590 -     16621    3.2 
                               -    Term     16577 -     16607    3.0 
    15     6 Tu  1   6/0.211   -    CDS      16618 -     16974    347  ## COG3152 Predicted membrane protein
                               -    Prom     17123 -     17182    6.4 
                               -    Term     17168 -     17202    3.5 
    16     7 Tu  1   4/0.474   -    CDS      17216 -     17581    325  ## COG3152 Predicted membrane protein
                               -    Prom     17622 -     17681    5.2 
                               -    Term     17789 -     17827    4.1 
    17     8 Op  1   3/0.842   -    CDS      17875 -     18861   1046  ## COG0435 Predicted glutathione S-transferase
                               -    Term     18874 -     18903    2.1 
    18     8 Op  2     .       -    CDS      18931 -     19413    493  ## COG2259 Predicted membrane protein
                               -    Prom     19434 -     19493    1.8 
                               -    Term     19469 -     19499    3.4 
    19     9 Op  1     .       -    CDS      19509 -     19808    396  ## JW3071 conserved hypothetical protein
    20     9 Op  2   7/0.158   -    CDS      19798 -     20202    412  ## COG5393 Predicted membrane protein
    21     9 Op  3     .       -    CDS      20205 -     20510    470  ## COG4575 Uncharacterized conserved protein
    22     9 Op  4     .       -    CDS      20548 -     20931    444  ## SSON_3256 hypothetical protein
                               -    Prom     20997 -     21056    4.1 
                               -    Term     20961 -     20999    6.4 
    23    10 Op  1     .       -    CDS      21063 -     21431    244  ## B21_02916 hypothetical protein
    24    10 Op  2     .       -    CDS      21450 -     22112    599  ## COG0586 Uncharacterized membrane-associated protein
                               -    Prom     22281 -     22340    6.0 
                               -    Term     22410 -     22445    4.1 
    25    11 Tu  1     .       -    CDS      22457 -     23248    981  ## COG2186 Transcriptional regulators
                               -    Prom     23278 -     23337    3.3 
                               -    Term     23301 -     23331    3.0 
    26    12 Tu  1     .       -    CDS      23363 -     24661   1860  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     24899 -     24958    3.0 
                               +    Prom     24978 -     25037    3.3 
    27    13 Op  1   3/0.842   +    CDS      25144 -     26556   1674  ## COG1904 Glucuronate isomerase
    28    13 Op  2     .       +    CDS      26571 -     28058   1557  ## COG2721 Altronate dehydratase
                               +    Term     28085 -     28121    6.4 
    29    14 Tu  1     .       +    CDS      28141 -     28692    260  ## ECUMN_3574 conserved hypothetical protein; putative inner membrane protein
                               -    Term     28652 -     28688    7.1 
    30    15 Tu  1     .       -    CDS      28697 -     29941   1382  ## COG3633 Na+/serine symporter
                               -    Prom     30065 -     30124    6.7 
                               -    Term     30239 -     30292    1.2 
    31    16 Tu  1     .       -    CDS      30340 -     31305   1237  ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance
                               -    Prom     31514 -     31573    6.7 
                               -    Term     31510 -     31562    6.6 
    32    17 Op  1   3/0.842   -    CDS      31588 -     32592    731  ## COG0673 Predicted dehydrogenases and related proteins
    33    17 Op  2   3/0.842   -    CDS      32653 -     33345    513  ## COG2949 Uncharacterized membrane protein
    34    17 Op  3     .       -    CDS      33422 -     33925    453  ## COG1451 Predicted metal-dependent hydrolase
                               -    Prom     33981 -     34040    2.0 
                               +    Prom     33906 -     33965    4.6 
    35    18 Tu  1     .       +    CDS      34010 -     35146    451  ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative
                               +    Term     35365 -     35403   10.2 
                               +    Prom     35346 -     35405    5.2 
    36    19 Op  1   6/0.211   +    CDS      35430 -     35744    185  ## COG4680 Uncharacterized protein conserved in bacteria
    37    19 Op  2     .       +    CDS      35741 -     36157    278  ## COG5499 Predicted transcription regulator containing HTH domain
                               -    Term     36146 -     36192    5.6 
    38    20 Tu  1     .       -    CDS      36202 -     38220   1853  ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family
                               -    Prom     38261 -     38320    7.2 
    39    21 Op  1     .       -    CDS      38646 -     40997   2646  ## JW3051 predicted glycosyl hydrolase
    40    21 Op  2     .       -    CDS      41014 -     42084   1005  ## B21_02898 hypothetical protein
                               -    Prom     42122 -     42181    6.7 
                               -    Term     42138 -     42198    9.3 
    41    22 Op  1   3/0.842   -    CDS      42218 -     43651   1425  ## COG0531 Amino acid transporters
    42    22 Op  2     .       -    CDS      43714 -     44163    398  ## COG2731 Beta-galactosidase, beta subunit
    43    22 Op  3   1/0.895   -    CDS      44160 -     47252   3015  ## COG3250 Beta-galactosidase/beta-glucuronidase
                               -    Prom     47372 -     47431    3.9 
                               -    Term     47377 -     47426   12.3 
    44    23 Tu  1     .       -    CDS      47436 -     48419    940  ## COG1609 Transcriptional regulators
                               -    Prom     48608 -     48667    4.8 
                               +    Prom     48558 -     48617    3.1 
    45    24 Tu  1     .       +    CDS      48638 -     48970    483  ## COG0073 EMAP domain
                               +    Term     48976 -     49016    8.1 
                               -    Term     48963 -     49004    9.1 
    46    25 Tu  1     .       -    CDS      49012 -     50301   1420  ## COG4992 Ornithine/acetylornithine aminotransferase
    47    26 Tu  1     .       +    CDS      50809 -     52329   1450  ## COG0840 Methyl-accepting chemotaxis protein
                               -    Term     52351 -     52394    3.2 
    48    27 Tu  1     .       -    CDS      52482 -     53105    755  ## COG1695 Predicted transcriptional regulators
                               -    Prom     53131 -     53190    7.5 
                               +    Prom     53290 -     53349    5.7 
    49    28 Tu  1     .       +    CDS      53393 -     54157    759  ## COG2375 Siderophore-interacting protein
                               +    Term     54178 -     54211    5.4 
                               -   TRNA      54211 -     54286   93.9  # Met CAT 0 0
                               +    Prom     54330 -     54389    6.7 
    50    29 Tu  1     .       +    CDS      54411 -     54917    425  ## COG3663 G:T/U mismatch-specific DNA glycosylase
                               +    Term     54922 -     54952    2.6 
                               -    Term     54908 -     54940    3.0 
    51    30 Op  1  31/0.000   -    CDS      54996 -     56837   2385  ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
    52    30 Op  2   8/0.158   -    CDS      57032 -     58777   1355  ## COG0358 DNA primase (bacterial type)
                               -    Prom     58800 -     58859    3.0 
                               -    Term     58801 -     58841    6.1 
    53    31 Tu  1     .       -    CDS      58888 -     59103    357  ## PROTEIN SUPPORTED gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21
                               -    Prom     59239 -     59298    6.3 
                               +    Prom     59258 -     59317    4.0 
    54    32 Tu  1     .       +    CDS      59341 -     60354    660  ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase
                               -    Term     60186 -     60221   -0.7 
    55    33 Op  1   3/0.842   -    CDS      60397 -     61860   1585  ## COG0471 Di- and tricarboxylate transporters
                               -    Term     61869 -     61900    1.7 
    56    33 Op  2  11/0.000   -    CDS      61908 -     62537    248  ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase
    57    33 Op  3     .       -    CDS      62510 -     63418    262  ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase
                               -    Prom     63502 -     63561    3.5 
                               +    Prom     63443 -     63502    3.9 
    58    34 Tu  1     .       +    CDS      63628 -     64560    850  ## COG0583 Transcriptional regulator
    59    35 Tu  1     .       -    CDS      64573 -     65190    543  ## COG0344 Predicted membrane protein
                               -    Prom     65294 -     65353    1.8 
    60    36 Op  1   4/0.474   +    CDS      65295 -     65663    409  ## COG1539 Dihydroneopterin aldolase
    61    36 Op  2     .       +    CDS      65753 -     66574    999  ## COG1968 Uncharacterized bacitracin resistance protein
                               -    Term     66644 -     66688    4.1 
    62    37 Op  1     .       -    CDS      66755 -     66958     77  ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase
    63    37 Op  2   7/0.158   -    CDS      67007 -     67993    968  ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase
    64    37 Op  3     .       -    CDS      68057 -     68677    711  ## COG3103 SH3 domain protein
                               -    Prom     68704 -     68763    2.2 
                               +    Prom     68788 -     68847    2.6 
    65    38 Op  1   5/0.263   +    CDS      68919 -     70220   1521  ## COG3025 Uncharacterized conserved protein
    66    38 Op  2   5/0.263   +    CDS      70243 -     73083   3021  ## COG1391 Glutamine synthetase adenylyltransferase
    67    38 Op  3     .       +    CDS      73131 -     74564   1747  ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
                               +    Term     74763 -     74794    3.2 
                               -    Term     75300 -     75345    5.4 
    68    39 Op  1     .       -    CDS      75358 -     77019   1788  ## COG2268 Uncharacterized protein conserved in bacteria
    69    39 Op  2     .       -    CDS      77061 -     77675    236  ## B21_02870 hypothetical protein
                               -    Prom     77800 -     77859    6.2 
                               +    Prom     77791 -     77850    6.9 
    70    40 Tu  1     .       +    CDS      77944 -     78144    199  ## SSON_3186 glycogen synthesis protein GlgS
                               +    Term     78145 -     78183    3.5 
                               -    Term     78138 -     78165    1.5 
    71    41 Op  1     .       -    CDS      78187 -     79251    444  ## B21_02868 hypothetical protein
    72    41 Op  2  10/0.158   -    CDS      79253 -     80002    463  ## COG3121 P pilus assembly protein, chaperone PapD
    73    41 Op  3     .       -    CDS      80018 -     81667    874  ## COG3188 P pilus assembly protein, porin PapC
Predicted protein(s)
>gi|223713544|gb|ACDM01000054.1| GENE     1       283  -      1470    500    395 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_3270 NR:ns ## KEGG: ECIAI1_3270 # Name: yhaC # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1     395       1     395     395     679   96.0  0
MFPVSSIGNDISSDLVRRKMNDLPESPTGNNLEALAPGIEKLKQTSIEMVTLLNTLQPGG
KCIITGDFQKELAYLQNVILYNVSSLRLDFLGYNAQIIQRSDNTCELTINEPLKNQEIST
GNININCPLKDIYNEIRRLNVIFSCGTGDIVDLSSLDLRNVDLDYYDFTDKHMANTILNP
FKLNSTNFTNANMFQVNFVSSTQNATISWDYLLKITPVLISISDMYSEEKIKFVESCLNE
PGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKEIYKSSSKIINCLNRIKLPEMKEFS
SEKIYDYIDIIIEDYENIKENAYLVVPQINYTMDLNIEDSSSEELLSDNTLEKDENSPDN
GFEVGEYNTYEAYNSEKQYFTREDYTYDYDLLNAI
>gi|223713544|gb|ACDM01000054.1| GENE     2      1492  -      2031     79    179 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_3595 NR:ns ## KEGG: EcE24377A_3595 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     179       8     186     186     363  100.0  1e-99
MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVL
SAITALNFYHGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCS
AVNKKELECIKETISKYCAKFTRKEAILTPLVHFNKTSITSDCWQILFFSPDHFNNDFY
>gi|223713544|gb|ACDM01000054.1| GENE     3      2820  -      3758    720    312 aa, chain + ## HITS:1  COG:ECs3998 KEGG:ns NR:ns ## COG: ECs3998 COG0583 # Protein_GI_number: 15833252 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     312       1     312     312     593  100.0  1e-169
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTG
VTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFK
EVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKS
RTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNA
DFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY
NGCRRRQLIEVG
>gi|223713544|gb|ACDM01000054.1| GENE     4      3857  -      4846   1026    329 aa, chain + ## HITS:1  COG:ECs3997 KEGG:ns NR:ns ## COG: ECs3997 COG1171 # Protein_GI_number: 15833251 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1     329       1     329     329     590  100.0  1e-169
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIR
GAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY
SAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVI
VPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDV
SRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQY
IQNRKTVSIISGGNIDLSRVSQITGFVDA
>gi|223713544|gb|ACDM01000054.1| GENE     5      4868  -      6199   1440    443 aa, chain + ## HITS:1  COG:ECs3996 KEGG:ns NR:ns ## COG: ECs3996 COG0814 # Protein_GI_number: 15833250 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1     443       1     443     443     795  100.0  0
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAY
PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTIT
NTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL
SLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYE
KDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANH
FASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSL
GKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG
RLDNVFVTVIGLLTILNIVYKLF
>gi|223713544|gb|ACDM01000054.1| GENE     6      6225  -      7433   1081    402 aa, chain + ## HITS:1  COG:tdcD KEGG:ns NR:ns ## COG: tdcD COG0282 # Protein_GI_number: 16131008 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Escherichia coli K12 # 1     402       5     406     406     790  100.0  0
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSY
EGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNY
ANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHR
YVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDV
DFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTF
VHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGLEIDTEMNNRSNSC
GERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>gi|223713544|gb|ACDM01000054.1| GENE     7      7467  -      9761   2607    764 aa, chain + ## HITS:1  COG:ECs3994 KEGG:ns NR:ns ## COG: ECs3994 COG1882 # Protein_GI_number: 15833248 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli O157:H7 # 1     764       1     764     764    1582   99.0  0
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWE
KVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGI
NMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRG
RIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQE
MAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGV
LNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFR
YLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYA
IACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKV
MDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDS
LSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYR
NAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLP
FTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREML
LDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>gi|223713544|gb|ACDM01000054.1| GENE     8      9775  -     10164    382    129 aa, chain + ## HITS:1  COG:tdcF KEGG:ns NR:ns ## COG: tdcF COG0251 # Protein_GI_number: 16131006 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1     129      22     150     150     249  100.0  1e-66
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAI
VVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLE
IEAIAVRSA
>gi|223713544|gb|ACDM01000054.1| GENE     9     10236  -     11600   1199    454 aa, chain + ## HITS:1  COG:ECs3992 KEGG:ns NR:ns ## COG: ECs3992 COG1760 # Protein_GI_number: 15833246 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli O157:H7 # 1     454       1     454     454     902   99.0  0
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGH
ATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEML
PRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKM
CDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRA
VALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYY
DKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGG
SPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVS
LDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>gi|223713544|gb|ACDM01000054.1| GENE    10     11875  -     13206   1396    443 aa, chain + ## HITS:1  COG:ECs3991 KEGG:ns NR:ns ## COG: ECs3991 COG0814 # Protein_GI_number: 15833245 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1     443       1     443     443     786   99.0  0
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQV
GLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYF
VMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKI
STGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSP
MVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISA
LAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKI
NENLVQRGIIIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYK
GMSLYLIIVTGLLLCVSPFLAFS
>gi|223713544|gb|ACDM01000054.1| GENE    11     13234  -     14544   1223    436 aa, chain + ## HITS:1  COG:yhaN+M KEGG:ns NR:ns ## COG: yhaN+M COG3681 # Protein_GI_number: 16132252 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     436       1     436     436     753  100.0  0
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLM
KNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKI
QEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTV
LSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLL
AKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLAR
ALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSG
MICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSM
QQTDRQIIEIMASKAR
>gi|223713544|gb|ACDM01000054.1| GENE    12     14678  -     14842    209     54 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3525 NR:ns ## KEGG: EC55989_3525 # Name: yhaL # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      54       1      54      54      65   98.0  7e-10
MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>gi|223713544|gb|ACDM01000054.1| GENE    13     14865  -     15566    656    233 aa, chain - ## HITS:1  COG:yhaK KEGG:ns NR:ns ## COG: yhaK COG1741 # Protein_GI_number: 16131001 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1     233       1     233     233     474  100.0  1e-134
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYP
KVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLD
ACPQRENPLIQKLALNMGKQQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPR
AYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>gi|223713544|gb|ACDM01000054.1| GENE    14     15671  -     16567    918    298 aa, chain + ## HITS:1  COG:ECs3987 KEGG:ns NR:ns ## COG: ECs3987 COG0583 # Protein_GI_number: 15833241 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     298       1     298     298     553  100.0  1e-157
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLA
AKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNGK
>gi|223713544|gb|ACDM01000054.1| GENE    15     16618  -     16974    347    118 aa, chain - ## HITS:1  COG:ECs3986 KEGG:ns NR:ns ## COG: ECs3986 COG3152 # Protein_GI_number: 15833240 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     118       1     118     118     220  100.0  5e-58
MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATF
LPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYGNDPKFGSN
>gi|223713544|gb|ACDM01000054.1| GENE    16     17216  -     17581    325    121 aa, chain - ## HITS:1  COG:ECs3985 KEGG:ns NR:ns ## COG: ECs3985 COG3152 # Protein_GI_number: 15833239 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     121       1     121     121     223  100.0  5e-59
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYG
ILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLE
P
>gi|223713544|gb|ACDM01000054.1| GENE    17     17875  -     18861   1046    328 aa, chain - ## HITS:1  COG:yqjG KEGG:ns NR:ns ## COG: yqjG COG0435 # Protein_GI_number: 16130997 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted glutathione S-transferase # Organism: Escherichia coli K12 # 1     328       1     328     328     662  100.0  0
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVS
LACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLY
LHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKID
ELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADI
RLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSH
KTINPTGIISIGPWQDLDEPHGRDVRFG
>gi|223713544|gb|ACDM01000054.1| GENE    18     18931  -     19413    493    160 aa, chain - ## HITS:1  COG:ECs3983 KEGG:ns NR:ns ## COG: ECs3983 COG2259 # Protein_GI_number: 15833237 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     160       1     160     160     273   99.0  8e-74
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITG
YAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNF
AEGVNSLMLMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>gi|223713544|gb|ACDM01000054.1| GENE    19     19509  -     19808    396     99 aa, chain - ## HITS:1  COG:no KEGG:JW3071 NR:ns ## KEGG: JW3071 # Name: yqjK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      99       1      99      99     140  100.0  1e-32
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLETTGAYDRRWNMLLSLRSWALVGSSVM
AIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>gi|223713544|gb|ACDM01000054.1| GENE    20     19798  -     20202    412    134 aa, chain - ## HITS:1  COG:STM3230 KEGG:ns NR:ns ## COG: STM3230 COG5393 # Protein_GI_number: 16766529 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1     130       1     130     132     198   89.0  2e-51
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLF
AAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHEL
ANDRQLLEEESREQ
>gi|223713544|gb|ACDM01000054.1| GENE    21     20205  -     20510    470    101 aa, chain - ## HITS:1  COG:ECs3980 KEGG:ns NR:ns ## COG: ECs3980 COG4575 # Protein_GI_number: 15833234 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     101       1     101     101     150  100.0  4e-37
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDA
IAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR
>gi|223713544|gb|ACDM01000054.1| GENE    22     20548  -     20931    444    127 aa, chain - ## HITS:1  COG:no KEGG:SSON_3256 NR:ns ## KEGG: SSON_3256 # Name: yqjC # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     127       1     127     127     158   99.0  6e-38
MEGSRMKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQNRIDGLNKALS
EVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAKRERKLAEAQEELK
KLEARDY
>gi|223713544|gb|ACDM01000054.1| GENE    23     21063  -     21431    244    122 aa, chain - ## HITS:1  COG:no KEGG:B21_02916 NR:ns ## KEGG: B21_02916 # Name: yqjB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     122       6     127     127     209  100.0  2e-53
MSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIP
FKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHR
FG
>gi|223713544|gb|ACDM01000054.1| GENE    24     21450  -     22112    599    220 aa, chain - ## HITS:1  COG:STM3226 KEGG:ns NR:ns ## COG: STM3226 COG0586 # Protein_GI_number: 16766525 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1     220       1     220     220     372   95.0  1e-103
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
>gi|223713544|gb|ACDM01000054.1| GENE    25     22457  -     23248    981    263 aa, chain - ## HITS:1  COG:ECs3976 KEGG:ns NR:ns ## COG: ECs3976 COG2186 # Protein_GI_number: 15833230 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     263       1     263     263     511  100.0  1e-145
MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIM
LEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQLIESNIAEFAATQ
VTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALAAIVEKMWTQRSHNPY
WKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEF
NADRYLFAENPVVHLDTATSGSK
>gi|223713544|gb|ACDM01000054.1| GENE    26     23363  -     24661   1860    432 aa, chain - ## HITS:1  COG:ECs3975 KEGG:ns NR:ns ## COG: ECs3975 COG0477 # Protein_GI_number: 15833229 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     432      41     472     472     788  100.0  0
MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNISTQQYSYIIAAYSAAYTV
MQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLAVARGAVGAAEAAMIPAGL
KASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGALSFIWAMA
WLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKMSVGQILRNRQFWGIALPRFLAE
PAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCILGGYLPPLFQRWFGVNLIV
SRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCIGGFAHQALSGALITLSSDVFGRNEVA
TANGLTGMSAWLASTLFALVVGALADTIGFSPLFAVLAVFDLLGALVIWTVLQNKPAIEV
AQETHNDPAPQH
>gi|223713544|gb|ACDM01000054.1| GENE    27     25144  -     26556   1674    470 aa, chain + ## HITS:1  COG:uxaC KEGG:ns NR:ns ## COG: uxaC COG1904 # Protein_GI_number: 16130987 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Escherichia coli K12 # 1     470       1     470     470     993  100.0  0
MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAEDYRFKNLYDIWLKGDHY
KWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLS
PSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDPIDSLEHHAEIAKDGSFTIKV
LPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADLQTALTKRLDHFAAHGCKVSDHA
LDVVMFAEANEAELDSILARRLAGETLSEHEVAQFKTAVLVFLGAEYARRGWVQQYHIGA
LRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLLSKQNEENLLPKTILYCLNPRDNEVLG
TMIGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQLAQLGLLSRFVGMLTDSRSFLSYT
RHEYFRRILCQMIGRWVEAGEAPADINLLGEMVKNICFNNARDYFAIELN
>gi|223713544|gb|ACDM01000054.1| GENE    28     26571  -     28058   1557    495 aa, chain + ## HITS:1  COG:uxaA KEGG:ns NR:ns ## COG: uxaA COG2721 # Protein_GI_number: 16130986 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1     495       1     495     495    1023  100.0  0
MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKFALTDIAKGANVIKYGL
PIGYALADIAAGVHVHAHNTRTNLSDLDQYRYQPDFQDLPAQAADREVQIYRRANGDVGV
RNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLFSHTYGCSQLGDDHINTRTML
QNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPERVHFMICQQQDDEIEAGIEHLHQ
LYNVMRNDKREPGKLSELKFGLECGGSDGLSGITANPMLGRFSDYVIANGGTTVLTEVPE
MFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEDKSL
GCTQKAGSSVVVDVLRYGERLKTPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPY
GGFVPTVKIATNSELAAKKKHWIDFDAGQLIHGKAMPQLLEEFIDTIVEFANGKQTCNER
NDFRELAIFKSGVTL
>gi|223713544|gb|ACDM01000054.1| GENE    29     28141  -     28692    260    183 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3574 NR:ns ## KEGG: ECUMN_3574 # Name: ygjV # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     183       1     183     183     350  100.0  1e-95
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILN
AIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFRCKGLTMRC
VMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVD
ERG
>gi|223713544|gb|ACDM01000054.1| GENE    30     28697  -     29941   1382    414 aa, chain - ## HITS:1  COG:ECs3971 KEGG:ns NR:ns ## COG: ECs3971 COG3633 # Protein_GI_number: 15833225 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Escherichia coli O157:H7 # 1     414       1     414     414     700  100.0  0
MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPI
LVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDIS
PPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNA
VTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWW
KIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINM
AGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFG
ISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN
>gi|223713544|gb|ACDM01000054.1| GENE    31     30340  -     31305   1237    321 aa, chain - ## HITS:1  COG:ECs3970 KEGG:ns NR:ns ## COG: ECs3970 COG0861 # Protein_GI_number: 15833224 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Escherichia coli O157:H7 # 1     321       1     321     321     550   99.0  1e-156
MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFW
WYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVL
GAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGH
LRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTS
NLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFIGIKMLIVDFYHIPIAVSLGVVFGI
LVMTFIINAWVNYRHDKQRGG
>gi|223713544|gb|ACDM01000054.1| GENE    32     31588  -     32592    731    334 aa, chain - ## HITS:1  COG:ygjR KEGG:ns NR:ns ## COG: ygjR COG0673 # Protein_GI_number: 16130982 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1     334       1     334     334     664  100.0  0
MEYPRVMIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTS
LEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQ
VVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSN
GSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDS
VLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHL
VDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
>gi|223713544|gb|ACDM01000054.1| GENE    33     32653  -     33345    513    230 aa, chain - ## HITS:1  COG:ygjQ KEGG:ns NR:ns ## COG: ygjQ COG2949 # Protein_GI_number: 16130981 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli K12 # 1     230       1     230     230     470  100.0  1e-133
MLRAFARLLLRICFSRRTLKIACLLLLVAGATILIADRVMVNASKQLTWSDVNAVPARNV
GLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDEASGMQQALIAKGVPA
KVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWLAKQYGIDAIGFNAPDLN
MKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPFSEHGCPAQK
>gi|223713544|gb|ACDM01000054.1| GENE    34     33422  -     33925    453    167 aa, chain - ## HITS:1  COG:ygjP KEGG:ns NR:ns ## COG: ygjP COG1451 # Protein_GI_number: 16130980 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     167      13     179     179     334  100.0  4e-92
MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLR
NAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKVEIRVATVFRNAPEPFLRMIVV
HELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQNKI
>gi|223713544|gb|ACDM01000054.1| GENE    35     34010  -     35146    451    378 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 13     371      18     368     371 178  33 9e-44
MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSC
ALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPKTLAL
LEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNE
PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG
VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN
AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTI
ATNNKFVVLKAVKLGRRR
>gi|223713544|gb|ACDM01000054.1| GENE    36     35430  -     35744    185    104 aa, chain + ## HITS:1  COG:ECs3965 KEGG:ns NR:ns ## COG: ECs3965 COG4680 # Protein_GI_number: 15833219 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     104       1     104     104     192  100.0  2e-49
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVF
NVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK
>gi|223713544|gb|ACDM01000054.1| GENE    37     35741  -     36157    278    138 aa, chain + ## HITS:1  COG:ygjM KEGG:ns NR:ns ## COG: ygjM COG5499 # Protein_GI_number: 16130977 # Func_class: K Transcription # Function: Predicted transcription regulator containing HTH domain # Organism: Escherichia coli K12 # 1     138       1     138     138     259  100.0  1e-69
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAW
EESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLE
HAKKLATRFGISPALFID
>gi|223713544|gb|ACDM01000054.1| GENE    38     36202  -     38220   1853    672 aa, chain - ## HITS:1  COG:fadH_1 KEGG:ns NR:ns ## COG: fadH_1 COG1902 # Protein_GI_number: 16130976 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1     354       1     354     354     729  100.0  0
MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGI
APDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSAL
QAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQR
SDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEA
AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL
SRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRA
CHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIP
GKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDHPK
VLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQ
AGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI
DDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARR
AIAQGTRLALEI
>gi|223713544|gb|ACDM01000054.1| GENE    39     38646  -     40997   2646    783 aa, chain - ## HITS:1  COG:no KEGG:JW3051 NR:ns ## KEGG: JW3051 # Name: ygjK # Def: predicted glycosyl hydrolase # Organism: E.coli_J # Pathway: not_defined # 1     783       1     783     783    1592  100.0  0
MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGA
WHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALV
QKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIA
GEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH
INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATP
EQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNP
DIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAW
SVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLF
TVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKY
VANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEA
KRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFN
GAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME
RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFF
RKQ
>gi|223713544|gb|ACDM01000054.1| GENE    40     41014  -     42084   1005    356 aa, chain - ## HITS:1  COG:no KEGG:B21_02898 NR:ns ## KEGG: B21_02898 # Name: ygjJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     356       1     356     356     698  100.0  0
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYM
DLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGI
NRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGN
FRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITD
GTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAK
HRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW
>gi|223713544|gb|ACDM01000054.1| GENE    41     42218  -     43651   1425    477 aa, chain - ## HITS:1  COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1     477       1     477     477     804   99.0  0
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFTPFCLIIAE
FVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEY
IMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQ
PADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFI
GVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSL
LMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQD
LMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVG
FVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
>gi|223713544|gb|ACDM01000054.1| GENE    42     43714  -     44163    398    149 aa, chain - ## HITS:1  COG:ebgC KEGG:ns NR:ns ## COG: ebgC COG2731 # Protein_GI_number: 16130972 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1     149       1     149     149     287  100.0  4e-78
MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFT
GHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDI
HEAYRFICNNAVKKVVLKVTIEDGYFHNK
>gi|223713544|gb|ACDM01000054.1| GENE    43     44160  -     47252   3015   1030 aa, chain - ## HITS:1  COG:ebgA KEGG:ns NR:ns ## COG: ebgA COG3250 # Protein_GI_number: 16130971 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1    1030      13    1042    1042    2183   99.0  0
MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVP
EAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLS
DGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQW
ADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAA
SPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTL
KDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKD
LQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQW
EKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDA
EVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGH
YVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIA
PVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQ
ITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLE
DDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQ
PNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSG
ERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENY
PFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDI
TLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFF
STNLHSENKQ
>gi|223713544|gb|ACDM01000054.1| GENE    44     47436  -     48419    940    327 aa, chain - ## HITS:1  COG:ebgR KEGG:ns NR:ns ## COG: ebgR COG1609 # Protein_GI_number: 16130970 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     327       1     327     327     659  100.0  0
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAV
NQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPDIKNVTGILI
VGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFI
GGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFV
ASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV
YEKARDGRALPLLVFVPSKLKLRGTTR
>gi|223713544|gb|ACDM01000054.1| GENE    45     48638  -     48970    483    110 aa, chain + ## HITS:1  COG:ygjH KEGG:ns NR:ns ## COG: ygjH COG0073 # Protein_GI_number: 16130969 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Escherichia coli K12 # 1     110       1     110     110     194  100.0  3e-50
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMG
KTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
>gi|223713544|gb|ACDM01000054.1| GENE    46     49012  -     50301   1420    429 aa, chain - ## HITS:1  COG:ygjG KEGG:ns NR:ns ## COG: ygjG COG4992 # Protein_GI_number: 16130968 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1     429      68     496     496     863  100.0  0
MKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGG
FGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSG
TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV
PFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMIL
DEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHT
TTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGML
MAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA
AMRVSVEEA
>gi|223713544|gb|ACDM01000054.1| GENE    47     50809  -     52329   1450    506 aa, chain + ## HITS:1  COG:aer_2 KEGG:ns NR:ns ## COG: aer_2 COG0840 # Protein_GI_number: 16130967 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 125     506       1     382     382     674  100.0  0
MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPD
MPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATD
EEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLPLRWRARGVMTLMFILLAAML
WFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQALKVATGERNSVEHLNRSDELG
LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMN
QMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRIGTITSLIND
IAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASADKVQS
GSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQKNAEL
VEESAQVSAMVKHRASRLEDAVTVLH
>gi|223713544|gb|ACDM01000054.1| GENE    48     52482  -     53105    755    207 aa, chain - ## HITS:1  COG:yqjI KEGG:ns NR:ns ## COG: yqjI COG1695 # Protein_GI_number: 16130966 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     207       1     207     207     351  100.0  5e-97
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRFFGH
GELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEG
GKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLRVN
QSDISDAQIKKIIAVIDRAAFDITQLD
>gi|223713544|gb|ACDM01000054.1| GENE    49     53393  -     54157    759    254 aa, chain + ## HITS:1  COG:yqjH KEGG:ns NR:ns ## COG: yqjH COG2375 # Protein_GI_number: 16130965 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Escherichia coli K12 # 1     254       1     254     254     518  100.0  1e-147
MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDGFTSRGFDDHSKLFFPQ
PDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVASGWAMQAQP
GDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLETLSKLAVKPQVSALVSVRDNA
CQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYFIWITGEGKVVKNLSRRFEAEQY
DPQRVRAAAYWHAK
>gi|223713544|gb|ACDM01000054.1| GENE    50     54411  -     54917    425    168 aa, chain + ## HITS:1  COG:ygjF KEGG:ns NR:ns ## COG: ygjF COG3663 # Protein_GI_number: 16130964 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Escherichia coli K12 # 1     168       1     168     168     336  100.0  1e-92
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLL
DYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRG
AQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR
>gi|223713544|gb|ACDM01000054.1| GENE    51     54996  -     56837   2385    613 aa, chain - ## HITS:1  COG:ECs3950 KEGG:ns NR:ns ## COG: ECs3950 COG0568 # Protein_GI_number: 15833204 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1     613       1     613     613    1031   99.0  0
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR
SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
>gi|223713544|gb|ACDM01000054.1| GENE    52     57032  -     58777   1355    581 aa, chain - ## HITS:1  COG:ECs3949 KEGG:ns NR:ns ## COG: ECs3949 COG0358 # Protein_GI_number: 15833203 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Escherichia coli O157:H7 # 1     581       1     581     581    1191  100.0  0
MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYH
CFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLM
DGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQ
SLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH
KGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA
TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEA
RMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLG
ILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLP
GLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLN
HMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
>gi|223713544|gb|ACDM01000054.1| GENE    53     58888  -     59103    357     71 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21 [Escherichia coli O157:H7 EDL933] # 1      71       1      71      71 142  100 7e-33
MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL
ARENARRTRLY
>gi|223713544|gb|ACDM01000054.1| GENE    54     59341  -     60354    660    337 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 3     327     480     813     832 258  44 5e-68
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ
AALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAPM
LEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG
PLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTD
NGAMIAYAGMVRFKAGATADLGVSVRPRWPLAELPAA
>gi|223713544|gb|ACDM01000054.1| GENE    55     60397  -     61860   1585    487 aa, chain - ## HITS:1  COG:ygjE KEGG:ns NR:ns ## COG: ygjE COG0471 # Protein_GI_number: 16130959 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1     487       1     487     487     802  100.0  0
MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVIVGLILEPVPGAVVAMV
GISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTGYEKTG
LGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPPLYQSQ
PNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDWFLGML
PLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVGALVLW
IFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFI
SWFGKLLAGSLSGYSPTMVMVALIVVFYLLRYFFASATAYTSALAPMMIAAALAMPEIPL
PVFCLMVGAAIGLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLL
WMPVVLL
>gi|223713544|gb|ACDM01000054.1| GENE    56     61908  -     62537    248    209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 1     199     305     504     508 100  30 2e-45
SVSHPERVMKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLN
GKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEG
CQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGN
NLIAENKKLFAERRDPIVEEICEHVHYIK
>gi|223713544|gb|ACDM01000054.1| GENE    57     62510  -     63418    262    302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 24     300      21     297     508 105  27 2e-45
MSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNMQ
KAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDEV
NTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFEN
ISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNRL
GIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTRS
AL
>gi|223713544|gb|ACDM01000054.1| GENE    58     63628  -     64560    850    310 aa, chain + ## HITS:1  COG:ygiP KEGG:ns NR:ns ## COG: ygiP COG0583 # Protein_GI_number: 16130956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     310       1     310     310     640  100.0  0
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
GKPDEGYQVM
>gi|223713544|gb|ACDM01000054.1| GENE    59     64573  -     65190    543    205 aa, chain - ## HITS:1  COG:ECs3942 KEGG:ns NR:ns ## COG: ECs3942 COG0344 # Protein_GI_number: 15833196 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     205       1     205     205     388  100.0  1e-108
MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGATNVLRIGGKGAAVAVLI
FDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGFKGGKGVATAFGAIAPIGW
DLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVSMLSCLILLRHHDN
IQRLWRRQETKIWTKFKRKREKDPE
>gi|223713544|gb|ACDM01000054.1| GENE    60     65295  -     65663    409    122 aa, chain + ## HITS:1  COG:folB KEGG:ns NR:ns ## COG: folB COG1539 # Protein_GI_number: 16130954 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Escherichia coli K12 # 1     122       2     123     123     222  100.0  1e-58
MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETV
VSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAVARAANVGVIIERGNNLKE
NN
>gi|223713544|gb|ACDM01000054.1| GENE    61     65753  -     66574    999    273 aa, chain + ## HITS:1  COG:ECs3940 KEGG:ns NR:ns ## COG: ECs3940 COG1968 # Protein_GI_number: 15833194 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Escherichia coli O157:H7 # 1     273       1     273     273     482  100.0  1e-136
MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAV
VVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPI
NVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATIS
GGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGFLTSGDIPMFAVGFITAFVVALI
AIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF
>gi|223713544|gb|ACDM01000054.1| GENE    62     66755  -     66958     77     67 aa, chain - ## HITS:1  COG:ECs3939 KEGG:ns NR:ns ## COG: ECs3939 COG0617 # Protein_GI_number: 15833193 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli O157:H7 # 1      67     346     412     412     134   98.0  3e-32
MRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKE
QRCPKPE
>gi|223713544|gb|ACDM01000054.1| GENE    63     67007  -     67993    968    328 aa, chain - ## HITS:1  COG:cca KEGG:ns NR:ns ## COG: cca COG0617 # Protein_GI_number: 16130952 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli K12 # 1     328       1     328     412     674  100.0  0
MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL
ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL
LRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKE
TESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGIHTLMTLSMAA
MLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARL
VAEFHDLIHTFPMLNPKTIVKLFDSIDA
>gi|223713544|gb|ACDM01000054.1| GENE    64     68057  -     68677    711    206 aa, chain - ## HITS:1  COG:ECs3938 KEGG:ns NR:ns ## COG: ECs3938 COG3103 # Protein_GI_number: 15833192 # Func_class: T Signal transduction mechanisms # Function: SH3 domain protein # Organism: Escherichia coli O157:H7 # 1     206       1     206     206     348  100.0  4e-96
MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHYRLVGTVNAGEEVTLLQ
TDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQVKTLTDKLTNIDNTWNQRT
AEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASVQLDDKQRTIIMQWFMYGGGV
LGLGLLLGLVLPHLIPSRKRKDRWMN
>gi|223713544|gb|ACDM01000054.1| GENE    65     68919  -     70220   1521    433 aa, chain + ## HITS:1  COG:ygiF KEGG:ns NR:ns ## COG: ygiF COG3025 # Protein_GI_number: 16130950 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     433       1     433     433     843  100.0  0
MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRGHDMGLRIRGE
NGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEVWPNGELPADLASRVQPLF
STDFYREKWLVAVDGSQIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVS
QTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELALAQWQYHE
ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTA
VYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQP
LGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQAWLENWQGLHHAIATGQRIEIEHFRNEA
NNQEPFWLHSGKR
>gi|223713544|gb|ACDM01000054.1| GENE    66     70243  -     73083   3021    946 aa, chain + ## HITS:1  COG:glnE KEGG:ns NR:ns ## COG: glnE COG1391 # Protein_GI_number: 16130949 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Escherichia coli K12 # 1     946       1     946     946    1822  100.0  0
MKPLSSPLQQYWQTVVERLPEPLAEESLSAQAKSVLTFSDFVQDSVIAHPEWLTELESQP
PQADEWQHYAAWLQEALCNVSDEAGLMRELRLFRRRIMVRIAWAQTLALVTEESILQQLS
YLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAW
PEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGFVYRVDMRLRPFGESGPLVLSFA
ALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELRAMLRPFVFRRYIDFSVIQSLRNMK
GMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLLPTLSAIAELH
LLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDELNRARLAWAMDFADWPQLTGA
LTAHMTNVRRVFNELIGDDESETQEESLSEQWRELWQDALQEDDTTPVLAHLSEDDRKQV
LTLIADFRKELDKRTIGPRGRQVLDHLMPHLLSDVCAREDAAVTLSRITALLVGIVTRTT
YLELLSEFPAALKHLISLCAASPMIASQLARYPLLLDELLDPNTLYQPTATDAYRDELRQ
YLLRVPEDDEEQQLEALRQFKQAQLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQ
AWVQMVARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGER
EIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAW
TWEHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHR
DRFDIKADEGGITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMAL
TRAYTTLRDELHHLALQELPGHVSEDCFTAERELVRASWQKWLVEE
>gi|223713544|gb|ACDM01000054.1| GENE    67     73131  -     74564   1747    477 aa, chain + ## HITS:1  COG:rfaE KEGG:ns NR:ns ## COG: rfaE COG2870 # Protein_GI_number: 16130948 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Escherichia coli K12 # 1     477       1     477     477     916  100.0  0
MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNI
ASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLD
FEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKG
TDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLL
QPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGT
STVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYL
ANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRL
IAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
>gi|223713544|gb|ACDM01000054.1| GENE    68     75358  -     77019   1788    553 aa, chain - ## HITS:1  COG:yqiK KEGG:ns NR:ns ## COG: yqiK COG2268 # Protein_GI_number: 16130947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     553       1     553     553     820  100.0  0
MDDIVNSVPSWMFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIV
MPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIATAAQTLG
QRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELE
SVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALS
RKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRILAERQIQETEIDR
EQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANLALAEAVS
AQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAEMQAAAIVELAEA
TRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPAVIEKSVEPMKSIDGIKIIQ
VDGLNRGGAAGDANTGNVGGGNLAEQALSAALSYRTQAPLIDSLLNEIGVSGGSLAALTS
PLTSTTPVEEKAE
>gi|223713544|gb|ACDM01000054.1| GENE    69     77061  -     77675    236    204 aa, chain - ## HITS:1  COG:no KEGG:B21_02870 NR:ns ## KEGG: B21_02870 # Name: yqiJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     204       1     204     209     397  100.0  1e-110
MILFADYNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLDHYDSITTGHISQALHY
LNIGRLPALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLFVVPVSLLFTIIAVHYTGK
IVAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGKLTDQFGQIHYLLLEPEEGKI
FTKGDKVLIICRLSATRYLAENNP
>gi|223713544|gb|ACDM01000054.1| GENE    70     77944  -     78144    199     66 aa, chain + ## HITS:1  COG:no KEGG:SSON_3186 NR:ns ## KEGG: SSON_3186 # Name: glgS # Def: glycogen synthesis protein GlgS # Organism: S.sonnei # Pathway: not_defined # 1      66       1      66      66     126  100.0  2e-28
MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR
ELELEH
>gi|223713544|gb|ACDM01000054.1| GENE    71     78187  -     79251    444    354 aa, chain - ## HITS:1  COG:no KEGG:B21_02868 NR:ns ## KEGG: B21_02868 # Name: yqiI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     354       1     354     354     689  100.0  0
MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEY
FMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLP
IAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVL
PDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSR
TIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDG
TATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN
>gi|223713544|gb|ACDM01000054.1| GENE    72     79253  -     80002    463    249 aa, chain - ## HITS:1  COG:yqiH KEGG:ns NR:ns ## COG: yqiH COG3121 # Protein_GI_number: 16130943 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     249       4     252     252     497  100.0  1e-141
MRYLNTKNIIAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEALKLTNQSKNLPYLAQT
WIEDTKGNKSRDFIVTVPPMVRLNPSEQIQIRMITQEKIAQLPKDRETLFYFNVREIPPK
TDKKNVMQVTMQHALKLFWRPKAIELEDDGVMTYEKVEIIRRNDGSIRFNNKMPYHVTLG
YIGTNGVTMLPQTQSLMVTPFSYANTQFKNVPSTFQVGYINDFGGLSFYEINCPVVNNIC
NISVANRDQ
>gi|223713544|gb|ACDM01000054.1| GENE    73     80018  -     81667    874    549 aa, chain - ## HITS:1  COG:yqiG KEGG:ns NR:ns ## COG: yqiG COG3188 # Protein_GI_number: 16130942 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     549     273     821     821    1039   99.0  0
TGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEEDGQVTQWQVAS
NSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDY
QSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFESTGSQLTFAGYR
FSDKNFVTMNEYINDTNHYTNYQNEKESYIVTFNQYLESLRLNTYVSLARNTYWDASSNV
NYSLSLSRDFDIGPLKNVSTSLTFSRINWEDDNQDQLYLNISIPWGTSRTLSYGMQRNQD
NKISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQHNTENGRLYLSGTSQRDS
YYSLNASWNGSFTATRHGAAFHDYSGSADSRFMIDADGAEDIPLNNKRAVTNRYGIGVIP
SVSSYITTSLSVDTRNLPENVDIENSVITTTLTEGAIGYAKLDTRKGYQIIGVIRLADGS
HPPLGISVKDETSHKELGLVADGGFVYLNGIQDDNKLALRWGDKSCFIQPPNSSNLTTGT
VILPCISQN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:08:25 2011
 Seq name: gi|223713543|gb|ACDM01000055.1| Escherichia sp. 4_1_40B cont1.55, whole genome shotgun sequence 
 Length of sequence - 107752 bp
 Number of predicted genes - 100, with homology - 100
 Number of transcription units - 49, operones - 17 average op.length -  4.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   6/0.000   -    CDS          3 -       864    345  ## COG3188 P pilus assembly protein, porin PapC
     2     1 Op  2     .       -    CDS        915 -      1466    489  ## COG3539 P pilus assembly protein, pilin FimA
                               -    Prom      1537 -      1596    9.6 
                               -    Term      1684 -      1733    7.1 
     3     2 Tu  1     .       -    CDS       1750 -      2040    299  ## COG2960 Uncharacterized protein conserved in bacteria
                               -    Prom      2068 -      2127    3.7 
     4     3 Tu  1     .       +    CDS       2414 -      3067    785  ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase
                               +    Term      3099 -      3140    5.0 
                               +    Prom      3083 -      3142    5.2 
     5     4 Tu  1     .       +    CDS       3329 -      3499    250  ## ECUMN_3528 hypothetical protein
                               +    Term      3517 -      3559   10.4 
                               -    Term      3416 -      3447   -0.8 
     6     5 Tu  1     .       -    CDS       3557 -      4330    900  ## COG0428 Predicted divalent heavy-metal cations transporter
                               -    Prom      4427 -      4486    3.5 
                               +    Prom      4323 -      4382    5.5 
     7     6 Tu  1     .       +    CDS       4473 -      5261    838  ## COG3384 Uncharacterized conserved protein
                               -    Term      5252 -      5291    9.1 
     8     7 Op  1   5/0.056   -    CDS       5299 -      6459   1211  ## COG0754 Glutathionylspermidine synthase
     9     7 Op  2     .       -    CDS       6465 -      7136    456  ## COG5463 Predicted integral membrane protein
                               -    Prom      7164 -      7223    2.5 
    10     8 Tu  1     .       -    CDS       7284 -      8765   1675  ## COG1538 Outer membrane protein
                               -    Prom      8880 -      8939    6.6 
                               +    Prom      8761 -      8820    4.7 
    11     9 Op  1   8/0.000   +    CDS       8970 -      9599    639  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
    12     9 Op  2   7/0.000   +    CDS       9600 -     10022    181  ## COG3151 Uncharacterized protein conserved in bacteria
    13     9 Op  3   7/0.000   +    CDS      10047 -     10874    851  ## COG1409 Predicted phosphohydrolases
    14     9 Op  4   7/0.000   +    CDS      10874 -     11455    481  ## COG3150 Predicted esterase
    15     9 Op  5     .       +    CDS      11484 -     13376   1985  ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
                               -    Term     13376 -     13412    4.2 
    16    10 Op  1   4/0.167   -    CDS      13424 -     13738    419  ## COG1359 Uncharacterized conserved protein
    17    10 Op  2     .       -    CDS      13769 -     14350    701  ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)
                               +    Prom     14585 -     14644    6.3 
    18    11 Tu  1     .       +    CDS      14771 -     15001     91  ## B21_02849 hypothetical protein
                               +    Term     15150 -     15177   -0.8 
                               -    Term     14995 -     15038    7.2 
    19    12 Op  1  40/0.000   -    CDS      15047 -     16396   1112  ## COG0642 Signal transduction histidine kinase
    20    12 Op  2     .       -    CDS      16393 -     17025    752  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               -    Prom     17116 -     17175    4.6 
                               +    Prom     17073 -     17132    8.5 
    21    13 Op  1   3/0.389   +    CDS      17204 -     17596    526  ## COG3111 Uncharacterized conserved protein
    22    13 Op  2     .       +    CDS      17649 -     18131    451  ## COG3449 DNA gyrase inhibitor
                               +    Term     18173 -     18202   -0.9 
                               +    Prom     18240 -     18299    4.1 
    23    14 Op  1     .       +    CDS      18336 -     18632    272  ## B21_02844 hypothetical protein
    24    14 Op  2   1/0.944   +    CDS      18634 -     19029    255  ## COG1396 Predicted transcriptional regulators
                               +    Term     19036 -     19072    3.3 
                               +    Prom     19075 -     19134    2.7 
    25    15 Tu  1     .       +    CDS      19162 -     20769   1606  ## COG4166 ABC-type oligopeptide transport system, periplasmic component
                               +    Prom     20799 -     20858    2.4 
    26    16 Tu  1     .       +    CDS      20907 -     23165   2619  ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
                               +    Term     23311 -     23339   -0.9 
                               +    Prom     23261 -     23320    2.3 
    27    17 Op  1   7/0.000   +    CDS      23399 -     24136    646  ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase
                               +    Term     24155 -     24189    2.8 
    28    17 Op  2   2/0.778   +    CDS      24211 -     25623   1230  ## COG2132 Putative multicopper oxidases
                               +    Term     25626 -     25670   10.6 
                               +    Prom     25646 -     25705    6.3 
    29    18 Tu  1     .       +    CDS      25734 -     27953   2195  ## COG1032 Fe-S oxidoreductase
                               +    Term     27960 -     28000   -0.9 
                               -    Term     27946 -     27987    8.0 
    30    19 Op  1     .       -    CDS      27996 -     28253    282  ## COG4238 Murein lipoprotein
    31    19 Op  2     .       -    CDS      28304 -     29230    622  ## B21_02836 hypothetical protein
                               -    Prom     29334 -     29393    2.9 
                               -    Term     29378 -     29416    7.2 
    32    20 Tu  1     .       -    CDS      29430 -     30257    898  ## COG0656 Aldo/keto reductases, related to diketogulonate reductase
                               -    Term     30266 -     30301    7.4 
    33    21 Tu  1     .       -    CDS      30362 -     31525   1573  ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
                               -    Prom     31688 -     31747    5.3 
    34    22 Tu  1     .       +    CDS      31719 -     32618    855  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Term     32610 -     32647    7.2 
    35    23 Tu  1     .       -    CDS      32658 -     33317    655  ## COG0586 Uncharacterized membrane-associated protein
                               -    Prom     33396 -     33455    3.9 
    36    24 Tu  1     .       -    CDS      33457 -     34644   1060  ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases
                               -    Prom     34796 -     34855    5.0 
                               +    Prom     34631 -     34690    2.7 
    37    25 Op  1  30/0.000   +    CDS      34911 -     35630    853  ## COG0811 Biopolymer transport proteins
    38    25 Op  2     .       +    CDS      35637 -     36062    535  ## COG0848 Biopolymer transport protein
                               +    Term     36067 -     36109    8.5 
                               -    Term     36056 -     36095    7.8 
    39    26 Tu  1     .       -    CDS      36101 -     36985    993  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
                               -    Prom     37145 -     37204    4.1 
                               +    Prom     37092 -     37151    3.6 
    40    27 Tu  1     .       +    CDS      37176 -     37670    661  ## COG2862 Predicted membrane protein
                               +    Term     37678 -     37710    6.1 
    41    28 Tu  1     .       -    CDS      37710 -     38750   1072  ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
                               -    Prom     38785 -     38844    1.8 
                               +    Prom     38733 -     38792    2.1 
    42    29 Tu  1     .       +    CDS      38906 -     39793    940  ## COG0412 Dienelactone hydrolase and related enzymes
                               +    Prom     39820 -     39879    3.5 
    43    30 Tu  1     .       +    CDS      39912 -     40199    315  ## ECIAI1_3148 hypothetical protein
                               +    Prom     40227 -     40286    3.5 
    44    31 Op  1   4/0.167   +    CDS      40388 -     41506   1235  ## COG1740 Ni,Fe-hydrogenase I small subunit
    45    31 Op  2   6/0.000   +    CDS      41509 -     42495    970  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
    46    31 Op  3   4/0.167   +    CDS      42485 -     43663   1617  ## COG5557 Polysulphide reductase
    47    31 Op  4   5/0.056   +    CDS      43660 -     45363   2014  ## COG0374 Ni,Fe-hydrogenase I large subunit
    48    31 Op  5     .       +    CDS      45363 -     45857    594  ## COG0680 Ni,Fe-hydrogenase maturation factor
    49    31 Op  6     .       +    CDS      45850 -     46338    526  ## SSON_3137 hydrogenase 2-specific chaperone
    50    31 Op  7   4/0.167   +    CDS      46331 -     46672    327  ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)
    51    31 Op  8     .       +    CDS      46685 -     46933    389  ## COG0298 Hydrogenase maturation factor
                               -    Term     46872 -     46910    2.1 
    52    32 Tu  1     .       -    CDS      47003 -     47869   1062  ## COG0625 Glutathione S-transferase
                               -    Prom     47896 -     47955    2.6 
                               +    Prom     47820 -     47879    3.1 
    53    33 Tu  1     .       +    CDS      48074 -     49933   2092  ## COG0754 Glutathionylspermidine synthase
                               -    Term     49739 -     49780    1.8 
    54    34 Tu  1     .       -    CDS      50021 -     50284     90  ## EcSMS35_3273 hypothetical protein
                               -    Prom     50360 -     50419    2.5 
                               +    Prom     49979 -     50038    5.1 
    55    35 Tu  1     .       +    CDS      50221 -     51720   1421  ## COG0306 Phosphate/sulphate permeases
                               +    Term     51727 -     51773    8.1 
    56    36 Tu  1     .       -    CDS      51769 -     52461    543  ## ECP_3071 ATP-binding protein YghT
                               -    Prom     52485 -     52544    5.7 
                               +    Prom     52462 -     52521    5.4 
    57    37 Op  1     .       +    CDS      52650 -     53348    344  ## ECP_3070 ATP-binding protein YghS
    58    37 Op  2     .       +    CDS      53380 -     54138    589  ## ECIAI39_3479 conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain
    59    37 Op  3     .       +    CDS      54184 -     55533    920  ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid
    60    37 Op  4     .       +    CDS      55533 -     56357    464  ## ECIAI39_3477 hypothetical protein
    61    37 Op  5     .       +    CDS      56369 -     56929    492  ## COG3054 Predicted transcriptional regulator
    62    37 Op  6  22/0.000   +    CDS      56960 -     58030   1017  ## COG0795 Predicted permeases
    63    37 Op  7     .       +    CDS      58027 -     59106    886  ## COG0795 Predicted permeases
                               +    Term     59184 -     59215   -0.7 
                               -    Term     59092 -     59138   14.8 
    64    38 Op  1     .       -    CDS      59141 -     60313   1173  ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes
    65    38 Op  2     .       -    CDS      60313 -     60561    288  ## S3224 hypothetical protein
    66    38 Op  3   2/0.778   -    CDS      60593 -     61507    810  ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases
    67    38 Op  4     .       -    CDS      61504 -     63195   1227  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
                               -    Prom     63373 -     63432    7.0 
                               +    Prom     63341 -     63400    7.5 
    68    39 Tu  1     .       +    CDS      63599 -     64741    961  ## c3711 hypothetical protein
    69    40 Tu  1     .       -    CDS      64817 -     65656    636  ## COG2186 Transcriptional regulators
                               -    Prom     65677 -     65736    5.9 
                               +    Prom     65630 -     65689    2.3 
    70    41 Op  1   9/0.000   +    CDS      65838 -     67337   1565  ## COG0277 FAD/FMN-containing dehydrogenases
    71    41 Op  2  15/0.000   +    CDS      67337 -     68389   1075  ## COG0277 FAD/FMN-containing dehydrogenases
    72    41 Op  3   1/0.944   +    CDS      68400 -     69623   1009  ## COG0247 Fe-S oxidoreductase
    73    41 Op  4   1/0.944   +    CDS      69628 -     70032    639  ## COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
    74    41 Op  5   1/0.944   +    CDS      70054 -     72225   2452  ## COG2225 Malate synthase
                               +    Term     72254 -     72299   -0.9 
                               +    Prom     72438 -     72497    4.4 
    75    42 Tu  1     .       +    CDS      72581 -     74263   1753  ## COG1620 L-lactate permease
                               +    Term     74273 -     74311    4.4 
    76    43 Tu  1     .       +    CDS      74748 -     79310   4062  ## ECIAI39_3460 inner membrane lipoprotein
    77    44 Op  1     .       +    CDS      79440 -     80249    435  ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases
    78    44 Op  2     .       +    CDS      80315 -     80725    316  ## JW2938 hypothetical protein
    79    44 Op  3     .       +    CDS      80743 -     81702    701  ## COG3031 Type II secretory pathway, component PulC
    80    44 Op  4   6/0.000   +    CDS      81732 -     83792   2088  ## COG1450 Type II secretory pathway, component PulD
    81    44 Op  5  24/0.000   +    CDS      83792 -     85285   1478  ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
    82    44 Op  6  10/0.000   +    CDS      85285 -     86508   1236  ## COG1459 Type II secretory pathway, component PulF
    83    44 Op  7     .       +    CDS      86525 -     86980    621  ## COG2165 Type II secretory pathway, pseudopilin PulG
    84    44 Op  8     .       +    CDS      86984 -     87547    378  ## ECUMN_3440 conserved hypothetical protein; putative exported protein
    85    44 Op  9  12/0.000   +    CDS      87544 -     87915    348  ## COG2165 Type II secretory pathway, pseudopilin PulG
    86    44 Op 10   7/0.000   +    CDS      87912 -     88517    351  ## COG4795 Type II secretory pathway, component PulJ
    87    44 Op 11   4/0.167   +    CDS      88514 -     89494   1007  ## COG3156 Type II secretory pathway, component PulK
    88    44 Op 12   2/0.778   +    CDS      89500 -     90669    764  ## COG3297 Type II secretory pathway, component PulL
    89    44 Op 13     .       +    CDS      90671 -     91207    552  ## COG3149 Type II secretory pathway, component PulM
                               +    Term     91241 -     91302    7.1 
                               +    Prom     92116 -     92175    3.8 
    90    45 Op  1  26/0.000   +    CDS      92264 -     93040    565  ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component
    91    45 Op  2     .       +    CDS      93037 -     93714    171  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               +    Prom     94056 -     94115    8.6 
    92    46 Tu  1     .       +    CDS      94330 -     97410    739  ## COG5610 Predicted hydrolase (HAD superfamily)
                               +    Term     97419 -     97453    4.0 
                               +    Prom     97430 -     97489    2.8 
    93    47 Tu  1     .       +    CDS      97529 -     98518     71  ## Pden_2282 TPR repeat-containing protein
                               -    Term     98486 -     98526    5.6 
    94    48 Op  1   5/0.056   -    CDS      98596 -     99804    477  ## COG3562 Capsule polysaccharide export protein
    95    48 Op  2     .       -    CDS      99839 -    101866   1013  ## COG3563 Capsule polysaccharide export protein
    96    48 Op  3     .       -    CDS     101863 -    102603    827  ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase
    97    48 Op  4   4/0.167   -    CDS     102613 -    104289   1519  ## COG1596 Periplasmic protein involved in polysaccharide export
    98    48 Op  5     .       -    CDS     104313 -    105461   1128  ## COG3524 Capsule polysaccharide export protein
    99    48 Op  6     .       -    CDS     105533 -    106516    783  ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation
                               -    Prom    106575 -    106634    5.8 
   100    49 Tu  1     .       -    CDS     107315 -    107470    111  ## ECED1_3592 hypothetical protein
                               -    Prom    107631 -    107690    4.7 
Predicted protein(s)
>gi|223713543|gb|ACDM01000055.1| GENE     1         3  -       864    345    287 aa, chain - ## HITS:1  COG:yqiG KEGG:ns NR:ns ## COG: yqiG COG3188 # Protein_GI_number: 16130942 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 26     287      10     271     821     526   96.0  1e-149
MDQMYKKLKLTTISELIKNIYCSLSVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETD
GQLPVGKYSLSTLINNKRTPIHLDLQWVLIDNLTAVCVTPEQLTLLGFTDEFIEKTQQTL
IDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPPELWDHGIAGAFLDYNLY
ASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFNNGKSQANNLDFPRIYLFRP
IPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPPDLRGYAPQ
>gi|223713543|gb|ACDM01000055.1| GENE     2       915  -      1466    489    183 aa, chain - ## HITS:1  COG:ygiL KEGG:ns NR:ns ## COG: ygiL COG3539 # Protein_GI_number: 16130939 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     183       1     183     183     338  100.0  3e-93
MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADT
VLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTMTGQSDLLKNTKETEIGGA
TGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKI
AYE
>gi|223713543|gb|ACDM01000055.1| GENE     3      1750  -      2040    299     96 aa, chain - ## HITS:1  COG:yqiC KEGG:ns NR:ns ## COG: yqiC COG2960 # Protein_GI_number: 16130938 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      96      21     116     116     135  100.0  1e-32
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLL
RTREKLALLEQRISELENRSTEIKKQPDPETLPPTL
>gi|223713543|gb|ACDM01000055.1| GENE     4      2414  -      3067    785    217 aa, chain + ## HITS:1  COG:ECs3929 KEGG:ns NR:ns ## COG: ECs3929 COG0108 # Protein_GI_number: 15833183 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Escherichia coli O157:H7 # 1     217       1     217     217     412  100.0  1e-115
MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIR
HGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRA
AIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDG
TMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS
>gi|223713543|gb|ACDM01000055.1| GENE     5      3329  -      3499    250     56 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3528 NR:ns ## KEGG: ECUMN_3528 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      56       9      64      64     102  100.0  5e-21
MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYLNSTREETAEKVE
>gi|223713543|gb|ACDM01000055.1| GENE     6      3557  -      4330    900    257 aa, chain - ## HITS:1  COG:ECs3928 KEGG:ns NR:ns ## COG: ECs3928 COG0428 # Protein_GI_number: 15833182 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Escherichia coli O157:H7 # 1     257       1     257     257     392  100.0  1e-109
MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEMLPAALAAE
GMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIKRTAILLTLGISLHN
FPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLA
EILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCG
MSVMGFSLVLLQTAGIG
>gi|223713543|gb|ACDM01000055.1| GENE     7      4473  -      5261    838    262 aa, chain + ## HITS:1  COG:ygiD KEGG:ns NR:ns ## COG: ygiD COG3384 # Protein_GI_number: 16130935 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     262      10     271     271     511  100.0  1e-145
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAME
TPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK
MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS
PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQE
PITIPVEGIEMGSLSMLSVQIG
>gi|223713543|gb|ACDM01000055.1| GENE     8      5299  -      6459   1211    386 aa, chain - ## HITS:1  COG:ECs3926 KEGG:ns NR:ns ## COG: ECs3926 COG0754 # Protein_GI_number: 15833180 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 1     386       1     386     386     790   99.0  0
MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQVEKLEEITAELHQMCL
KVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLDLAWDGTGEPKLLENNADT
PTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLIDRFVELREQYGFQLLHLTCCR
DTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQFTDLQDQVISNLFKLYPWEFML
REMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEMFPNHPNLLPAYFAEDDHPQMEKYV
VKPIFSREGANVSIIENGKTIEAAEGPYGEEGMIIQQFHPLPKFGDSYMLIGSWLVNDQP
AGIGIREDRALITQDMSRFYPHIFVE
>gi|223713543|gb|ACDM01000055.1| GENE     9      6465  -      7136    456    223 aa, chain - ## HITS:1  COG:ygiB KEGG:ns NR:ns ## COG: ygiB COG5463 # Protein_GI_number: 16130933 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1     223      12     234     234     360  100.0  1e-99
MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETVSLYQNADDCSAANPGK
SAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGS
FWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDATGKNYGAAQPGRTMTVP
KTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSSRSMGG
>gi|223713543|gb|ACDM01000055.1| GENE    10      7284  -      8765   1675    493 aa, chain - ## HITS:1  COG:tolC KEGG:ns NR:ns ## COG: tolC COG1538 # Protein_GI_number: 16130931 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli K12 # 1     493       3     495     495     801  100.0  0
MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPL
LPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTY
QTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNAR
AQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEK
RNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSN
MGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASI
SSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQL
NIKSALGTLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIADGYAPDSPAPVVQQTSA
RTTTSNGHNPFRN
>gi|223713543|gb|ACDM01000055.1| GENE    11      8970  -      9599    639    209 aa, chain + ## HITS:1  COG:ECs3922 KEGG:ns NR:ns ## COG: ECs3922 COG0494 # Protein_GI_number: 15833176 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     209       1     209     209     402   99.0  1e-112
MLKPDSLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAA
VLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLI
VKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV
EEGKIDNAASVIALQWLQLHHQALKNEWA
>gi|223713543|gb|ACDM01000055.1| GENE    12      9600  -     10022    181    140 aa, chain + ## HITS:1  COG:ECs3921 KEGG:ns NR:ns ## COG: ECs3921 COG3151 # Protein_GI_number: 15833175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     140       1     140     140     274  100.0  4e-74
MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVT
IEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQ
FLADWLRYCLAHGAMAIPVY
>gi|223713543|gb|ACDM01000055.1| GENE    13     10047  -     10874    851    275 aa, chain + ## HITS:1  COG:ECs3920 KEGG:ns NR:ns ## COG: ECs3920 COG1409 # Protein_GI_number: 15833174 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Escherichia coli O157:H7 # 1     275       1     275     275     528  100.0  1e-150
MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQAVLEAIRPHQHEFDLIV
ATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGE
QWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSL
RNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLLATPSTCVQFKPHCSNFTLDTIA
PGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY
>gi|223713543|gb|ACDM01000055.1| GENE    14     10874  -     11455    481    193 aa, chain + ## HITS:1  COG:ECs3919 KEGG:ns NR:ns ## COG: ECs3919 COG3150 # Protein_GI_number: 15833173 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1     193       1     193     193     390  100.0  1e-109
MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPSDAAELLESIVLEHGG
DSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVIEGGNHAFTGFEDY
FNPIVDFLGLHHL
>gi|223713543|gb|ACDM01000055.1| GENE    15     11484  -     13376   1985    630 aa, chain + ## HITS:1  COG:parE KEGG:ns NR:ns ## COG: parE COG0187 # Protein_GI_number: 16130926 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Escherichia coli K12 # 1     630       1     630     630    1300  100.0  0
MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH
ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN
ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS
VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG
NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI
LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ
NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD
SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL
RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT
EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD
AMMDMLLAKKRSEDRRNWLQEKGDMAEIEV
>gi|223713543|gb|ACDM01000055.1| GENE    16     13424  -     13738    419    104 aa, chain - ## HITS:1  COG:ECs3911 KEGG:ns NR:ns ## COG: ECs3911 COG1359 # Protein_GI_number: 15833165 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     104       1     104     104     199  100.0  9e-52
MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI
VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQPGI
>gi|223713543|gb|ACDM01000055.1| GENE    17     13769  -     14350    701    193 aa, chain - ## HITS:1  COG:ECs3910 KEGG:ns NR:ns ## COG: ECs3910 COG2249 # Protein_GI_number: 15833164 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1     193       1     193     193     400  100.0  1e-112
MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWA
DVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYM
LSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRY
TEEYRKHLVEIFG
>gi|223713543|gb|ACDM01000055.1| GENE    18     14771  -     15001     91     76 aa, chain + ## HITS:1  COG:no KEGG:B21_02849 NR:ns ## KEGG: B21_02849 # Name: ygiZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      76      35     110     110     112  100.0  6e-24
MLESGGNICSIPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGIC
LVCGWWLFWGRFIFCY
>gi|223713543|gb|ACDM01000055.1| GENE    19     15047  -     16396   1112    449 aa, chain - ## HITS:1  COG:ygiY KEGG:ns NR:ns ## COG: ygiY COG0642 # Protein_GI_number: 16130922 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     449       1     449     449     855  100.0  0
MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLMLFAKRLSTLDL
NEINAADRMAQTPNRLKHGHVDDDALTFAIFTHDGRMVLNDGDNGEDIPYSYQREGFADG
QLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIVAGQLIPWLVALPIMLIIMMV
LLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRPLVESLNQLFARTHAMMVRERRF
TSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLD
SLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNL
LDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLS
IVQRIAKLHGMNVEFGNAEQGGFEAKVSW
>gi|223713543|gb|ACDM01000055.1| GENE    20     16393  -     17025    752    210 aa, chain - ## HITS:1  COG:ECs3907 KEGG:ns NR:ns ## COG: ECs3907 COG0745 # Protein_GI_number: 15833161 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     210      10     219     219     407   99.0  1e-113
MLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREK
GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRH
GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNA
VEVHVHHLRRKLGSDFIRTVHGIGYTLGEK
>gi|223713543|gb|ACDM01000055.1| GENE    21     17204  -     17596    526    130 aa, chain + ## HITS:1  COG:ECs3906 KEGG:ns NR:ns ## COG: ECs3906 COG3111 # Protein_GI_number: 15833160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     130       1     130     130     242   99.0  1e-64
MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDSW
VTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEI
DVKQIRKVNP
>gi|223713543|gb|ACDM01000055.1| GENE    22     17649  -     18131    451    160 aa, chain + ## HITS:1  COG:ygiV KEGG:ns NR:ns ## COG: ygiV COG3449 # Protein_GI_number: 16130919 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Escherichia coli K12 # 1     160       1     160     160     331   98.0  3e-91
MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD
DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR
HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA
>gi|223713543|gb|ACDM01000055.1| GENE    23     18336  -     18632    272     98 aa, chain + ## HITS:1  COG:no KEGG:B21_02844 NR:ns ## KEGG: B21_02844 # Name: ygiU # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      98       1      98      98     193  100.0  2e-48
MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT
YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK
>gi|223713543|gb|ACDM01000055.1| GENE    24     18634  -     19029    255    131 aa, chain + ## HITS:1  COG:ygiT KEGG:ns NR:ns ## COG: ygiT COG1396 # Protein_GI_number: 16130917 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     131       1     131     131     263  100.0  6e-71
MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAF
RASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVL
DKHPELLNEIR
>gi|223713543|gb|ACDM01000055.1| GENE    25     19162  -     20769   1606    535 aa, chain + ## HITS:1  COG:ygiS KEGG:ns NR:ns ## COG: ygiS COG4166 # Protein_GI_number: 16130916 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     535       1     535     535    1060  100.0  0
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV
LDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQR
AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML
AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEK
PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA
MAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD
ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
NALYQQAEVIINQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH
>gi|223713543|gb|ACDM01000055.1| GENE    26     20907  -     23165   2619    752 aa, chain + ## HITS:1  COG:ECs3903 KEGG:ns NR:ns ## COG: ECs3903 COG0188 # Protein_GI_number: 15833157 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Escherichia coli O157:H7 # 1     752       1     752     752    1462  100.0  0
MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF
KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY
TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI
PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR
MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV
PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR
RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILEL
KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL
QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSN
QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA
GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL
PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGE
RGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE
>gi|223713543|gb|ACDM01000055.1| GENE    27     23399  -     24136    646    245 aa, chain + ## HITS:1  COG:plsC KEGG:ns NR:ns ## COG: plsC COG0204 # Protein_GI_number: 16130914 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Escherichia coli K12 # 1     245       1     245     245     516  100.0  1e-146
MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPTD
AESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNN
RTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVS
TTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKIAELDKEVAERE
AAGKV
>gi|223713543|gb|ACDM01000055.1| GENE    28     24211  -     25623   1230    470 aa, chain + ## HITS:1  COG:ECs3901 KEGG:ns NR:ns ## COG: ECs3901 COG2132 # Protein_GI_number: 15833155 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli O157:H7 # 1     470       1     470     470     930  100.0  0
MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRRGQPLFMTVQRAHWSFT
PGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMM
SPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVD
DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSR
RYQLQMSDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAAS
IVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDISLGD
DPGINGQLWDVNRIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGW
KDTVWVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP
>gi|223713543|gb|ACDM01000055.1| GENE    29     25734  -     27953   2195    739 aa, chain + ## HITS:1  COG:ECs3900 KEGG:ns NR:ns ## COG: ECs3900 COG1032 # Protein_GI_number: 15833154 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1     739       1     739     739    1516   99.0  0
MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDSCDIILVTGDAYVDHPS
FGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRR
LRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVR
RSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIRDVRNTAIIVKEALPGWSGVDST
RLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAVTVQPPRPKPWEKTYVLLPSFEKV
KGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPYKRV
PHPAYGNARIPAYEMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD
TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR
ARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM
GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY
PSPLANSTTMYYTGKNPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALE
AMGKKHLIGSRRDCLVPAPTIEEMREARRQNRNTRPALTKHTPMATQRQTPATAKKASST
QSRPVNAGAKKRPKAAVGR
>gi|223713543|gb|ACDM01000055.1| GENE    30     27996  -     28253    282     85 aa, chain - ## HITS:1  COG:yqhH KEGG:ns NR:ns ## COG: yqhH COG4238 # Protein_GI_number: 16130912 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein lipoprotein # Organism: Escherichia coli K12 # 1      85       1      85      85     149  100.0  2e-36
MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE
ANRANTRLDAQDYFDCLRCLRMYAE
>gi|223713543|gb|ACDM01000055.1| GENE    31     28304  -     29230    622    308 aa, chain - ## HITS:1  COG:no KEGG:B21_02836 NR:ns ## KEGG: B21_02836 # Name: yqhG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     308       1     308     308     608  100.0  1e-172
MKIILLFLAALASFTVHAQPPSQTVEQTVRHIYQNYKSDATAPYFGETGERAITSARIQQ
ALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTDADHADAVVRFRIFKDDKE
KTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLAALASLQKEQPEAFVAELFEH
IADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDMQIERQFIYDNPICFGEESLFSR
VDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQRREGKWEIADFIRPNSGSLLKQIEA
KTAARLKQ
>gi|223713543|gb|ACDM01000055.1| GENE    32     29430  -     30257    898    275 aa, chain - ## HITS:1  COG:STM3165 KEGG:ns NR:ns ## COG: STM3165 COG0656 # Protein_GI_number: 16766465 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 1     275       1     275     275     497   92.0  1e-141
MANPTVIKLQDGNVMPQLGLGVWQASNEEVITAIQKALEVGYRSIDTAAAYKNEEGVGKA
LKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYIDLYLMHWPVPAIDHYVEAW
KGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHK
IQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAE
NFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG
>gi|223713543|gb|ACDM01000055.1| GENE    33     30362  -     31525   1573    387 aa, chain - ## HITS:1  COG:yqhD KEGG:ns NR:ns ## COG: yqhD COG1979 # Protein_GI_number: 16130909 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Escherichia coli K12 # 1     387       1     387     387     782  100.0  0
MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVL
EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHIL
QTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYT
YTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDV
RANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTK
RAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKL
EEHGMTQLGENHDITLDVSRRIYEAAR
>gi|223713543|gb|ACDM01000055.1| GENE    34     31719  -     32618    855    299 aa, chain + ## HITS:1  COG:yqhC KEGG:ns NR:ns ## COG: yqhC COG2207 # Protein_GI_number: 16130908 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     299      77     375     375     597   99.0  1e-171
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI
GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH
FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL
LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
>gi|223713543|gb|ACDM01000055.1| GENE    35     32658  -     33317    655    219 aa, chain - ## HITS:1  COG:ECs3893 KEGG:ns NR:ns ## COG: ECs3893 COG0586 # Protein_GI_number: 15833147 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli O157:H7 # 1     219       1     219     219     384  100.0  1e-106
MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLPASFLPGDSLLILAGAL
IAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGWLAQLPAKYHQRATCMFDR
HGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVSVVTSFGYALSMIPF
VKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCNA
>gi|223713543|gb|ACDM01000055.1| GENE    36     33457  -     34644   1060    395 aa, chain - ## HITS:1  COG:metC KEGG:ns NR:ns ## COG: metC COG0626 # Protein_GI_number: 16130906 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1     395       1     395     395     814   99.0  0
MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRG
TLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGDHVLMTNTAYEPSQDFCSK
ILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA
IIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM
GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFW
KRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP
QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV
>gi|223713543|gb|ACDM01000055.1| GENE    37     34911  -     35630    853    239 aa, chain + ## HITS:1  COG:ECs3890 KEGG:ns NR:ns ## COG: ECs3890 COG0811 # Protein_GI_number: 15833144 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Escherichia coli O157:H7 # 1     239       6     244     244     441  100.0  1e-124
MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEA
RSLNQANDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAAVGRQ
MGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGL
VAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLLLQSRDLDLEASAAAHPVRVAQKLRAG
>gi|223713543|gb|ACDM01000055.1| GENE    38     35637  -     36062    535    141 aa, chain + ## HITS:1  COG:ECs3889 KEGG:ns NR:ns ## COG: ECs3889 COG0848 # Protein_GI_number: 15833143 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Escherichia coli O157:H7 # 1     141       1     141     141     250   99.0  5e-67
MAKHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD
TLHQAGYLKIGLVGEETAKAK
>gi|223713543|gb|ACDM01000055.1| GENE    39     36101  -     36985    993    294 aa, chain - ## HITS:1  COG:ECs3887 KEGG:ns NR:ns ## COG: ECs3887 COG1028 # Protein_GI_number: 15833141 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 1     294       1     294     294     557  100.0  1e-159
MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSG
IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH
EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGAS
IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG
>gi|223713543|gb|ACDM01000055.1| GENE    40     37176  -     37670    661    164 aa, chain + ## HITS:1  COG:ECs3886 KEGG:ns NR:ns ## COG: ECs3886 COG2862 # Protein_GI_number: 15833140 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     164       1     164     164     271  100.0  5e-73
MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPNIFSMAESDLILVLLSL
VDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIH
LLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLTRHNH
>gi|223713543|gb|ACDM01000055.1| GENE    41     37710  -     38750   1072    346 aa, chain - ## HITS:1  COG:yghZ KEGG:ns NR:ns ## COG: yghZ COG0667 # Protein_GI_number: 16130899 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     346       1     346     346     689   99.0  0
MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHF
DLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASL
DQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVE
LLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQ
DSRMHREGNKVRGLTPKMLTEANLNSLRLLHEMAQQRGQSMAQMALSWLLKDERVTSVLI
GASRAEQLEENVQALNNLTFSTEELAQIDQHIADGELNLWQASSDK
>gi|223713543|gb|ACDM01000055.1| GENE    42     38906  -     39793    940    295 aa, chain + ## HITS:1  COG:Z4353 KEGG:ns NR:ns ## COG: Z4353 COG0412 # Protein_GI_number: 15803544 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Escherichia coli O157:H7 EDL933 # 1     295      14     308     308     579   98.0  1e-165
MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALATQ
VEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARR
VAKAGYIALAPDGLSSVGGYPGNDDKGRELQQQIDPTKLMNDFFAAIEFMQRYPQATGKA
GITGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTADVAKIEAPLLLHYAELDTRINEGW
PAYEAALKANNKVYEAYIYPGVNHGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS
>gi|223713543|gb|ACDM01000055.1| GENE    43     39912  -     40199    315     95 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_3148 NR:ns ## KEGG: ECIAI1_3148 # Name: yghW # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      95       1      95      95     184  100.0  8e-46
MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL
TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN
>gi|223713543|gb|ACDM01000055.1| GENE    44     40388  -     41506   1235    372 aa, chain + ## HITS:1  COG:ECs3882 KEGG:ns NR:ns ## COG: ECs3882 COG1740 # Protein_GI_number: 15833136 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Escherichia coli O157:H7 # 1     372       1     372     372     703  100.0  0
MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT
GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS
IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL
PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA
GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI
GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR
QQKKDNADSRGE
>gi|223713543|gb|ACDM01000055.1| GENE    45     41509  -     42495    970    328 aa, chain + ## HITS:1  COG:ECs3881 KEGG:ns NR:ns ## COG: ECs3881 COG0437 # Protein_GI_number: 15833135 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1     328       1     328     328     674  100.0  0
MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDI
NFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEENGYAYIKKQCMHCVDPNC
VSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQK
GVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLALKPGSEYHYPRQTLKSGDTYL
HTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPKLDDLSTGARSENIQHTLYKGMMLP
LAVLAGLTVLVRRNTKNDHHDGGDDHES
>gi|223713543|gb|ACDM01000055.1| GENE    46     42485  -     43663   1617    392 aa, chain + ## HITS:1  COG:hybB KEGG:ns NR:ns ## COG: hybB COG5557 # Protein_GI_number: 16130895 # Func_class: C Energy production and conversion # Function: Polysulphide reductase # Organism: Escherichia coli K12 # 1     392       1     392     392     719  100.0  0
MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLL
IGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFY
IPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALL
PTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNG
PDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLV
VLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVA
IEICAYIVLIRLLPILPPLKQNDHNRHEASKA
>gi|223713543|gb|ACDM01000055.1| GENE    47     43660  -     45363   2014    567 aa, chain + ## HITS:1  COG:ECs3879 KEGG:ns NR:ns ## COG: ECs3879 COG0374 # Protein_GI_number: 15833133 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Escherichia coli O157:H7 # 1     567       1     567     567    1185  100.0  0
MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI
CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT
SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP
PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL
MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP
GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG
KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS
TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG
MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI
HSFDPCMACAVHVVDADGNEVVSVKVL
>gi|223713543|gb|ACDM01000055.1| GENE    48     45363  -     45857    594    164 aa, chain + ## HITS:1  COG:hybD KEGG:ns NR:ns ## COG: hybD COG0680 # Protein_GI_number: 16130893 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli K12 # 1     164       1     164     164     291  100.0  4e-79
MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGMELLGDMANRDHLII
ADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI
PESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPREAIHD
>gi|223713543|gb|ACDM01000055.1| GENE    49     45850  -     46338    526    162 aa, chain + ## HITS:1  COG:no KEGG:SSON_3137 NR:ns ## KEGG: SSON_3137 # Name: hybE # Def: hydrogenase 2-specific chaperone # Organism: S.sonnei # Pathway: not_defined # 1     162       1     162     162     324   98.0  6e-88
MTEEITGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW
MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI
EEGQRLTDDCARMILSLPVSNPDVPHAGRRALLFGRRSGENA
>gi|223713543|gb|ACDM01000055.1| GENE    50     46331  -     46672    327    113 aa, chain + ## HITS:1  COG:hybF KEGG:ns NR:ns ## COG: hybF COG0375 # Protein_GI_number: 16130891 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Escherichia coli K12 # 1     113       1     113     113     200  100.0  5e-52
MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFSFEIVCHGTVAQGC
DLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTGDSLIVKSIEVE
>gi|223713543|gb|ACDM01000055.1| GENE    51     46685  -     46933    389     82 aa, chain + ## HITS:1  COG:ECs3875 KEGG:ns NR:ns ## COG: ECs3875 COG0298 # Protein_GI_number: 15833129 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1      82       1      82      82     152   98.0  2e-37
MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSII
DEDEAKATLDALRQMDYDITSG
>gi|223713543|gb|ACDM01000055.1| GENE    52     47003  -     47869   1062    288 aa, chain - ## HITS:1  COG:ECs3874 KEGG:ns NR:ns ## COG: ECs3874 COG0625 # Protein_GI_number: 15833128 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1     288      17     304     304     598   99.0  1e-171
MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTI
MLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVFESGS
ILLYLAEKFGYFLPQDLAKRTETLNWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFT
MEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFLDAESYKHVQ
RWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG
>gi|223713543|gb|ACDM01000055.1| GENE    53     48074  -     49933   2092    619 aa, chain + ## HITS:1  COG:gsp_2 KEGG:ns NR:ns ## COG: gsp_2 COG0754 # Protein_GI_number: 16130888 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli K12 # 233     619       1     387     387     825  100.0  0
MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCV
EFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIW
DKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTF
DDTTILGWMIQTEDTDYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQA
NGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR
LRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFN
PAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELG
WDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLL
RPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCG
SNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD
ESLVIKKESDIEPLIVVKK
>gi|223713543|gb|ACDM01000055.1| GENE    54     50021  -     50284     90     87 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_3273 NR:ns ## KEGG: EcSMS35_3273 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 42      87       1      46      46      70   93.0  2e-11
MPEQVITKALCIYQGQQINLAYIRLRHFEFTNGRIISDFNGMGKVKYHFLTIKSVLFLVY
QTISIHSKSLEIIKTQVFHWLIYSYIK
>gi|223713543|gb|ACDM01000055.1| GENE    55     50221  -     51720   1421    499 aa, chain + ## HITS:1  COG:pitB KEGG:ns NR:ns ## COG: pitB COG0306 # Protein_GI_number: 16130887 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Escherichia coli K12 # 1     499       1     499     499     885   98.0  0
MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMQPQLAVVMAAFF
NFFGVLLGGLSVAYAIVHMLPTDLLLNMGSTHGLAMVFSMLLAAIIWNLGTWFFGLPASS
SHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLIVSPIVGLVIAGGLIFLLRRF
WSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSAAGVAFSHGANDGQKGIGLVMLV
LVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQHPELPQKLITMEPPLPATSTDGTQ
VTEFHCHPANTFDAIARVKTMLPGNMESYEPLSVSQRSQLRRIMLCISDTSAKLAKLPGV
SKEDQNLLKKLRSDMLSTIEYAPVWIIMAVALALGIGTMIGWCRVAMTIGEKIGKRGMTY
AQGMAAQMTAAVSIGLASYIGMPVSTTHVLSSAVAGTMVVDGGGLQRKTVTSILMAWVFT
LPAAIFLSGGLYWIALQLI
>gi|223713543|gb|ACDM01000055.1| GENE    56     51769  -     52461    543    230 aa, chain - ## HITS:1  COG:no KEGG:ECP_3071 NR:ns ## KEGG: ECP_3071 # Name: not_defined # Def: ATP-binding protein YghT # Organism: E.coli_536 # Pathway: not_defined # 1     230       1     230     230     459   98.0  1e-128
MQSITPPLIAVIGSDGSGKSTVCEHLITVVEKYGAAERVHLGKQAGNVGRAVTKLPFMGK
SLHKTIERNQVKTAKKLPGPVPALVITAFVARRLLRFRHMLACRRRGLIVLTDRYPQDQI
PGAYDGTVFPPNIEGGRFVSWLASQERKAFHWMASHKPDLVIKLNVDLDVACARKPDHKR
ESLARKIAITPQLTFGGAQLVDIDANQPLEKVLIDAEKAITDFMTARGYH
>gi|223713543|gb|ACDM01000055.1| GENE    57     52650  -     53348    344    232 aa, chain + ## HITS:1  COG:no KEGG:ECP_3070 NR:ns ## KEGG: ECP_3070 # Name: not_defined # Def: ATP-binding protein YghS # Organism: E.coli_536 # Pathway: not_defined # 1     232       1     232     232     468   98.0  1e-130
MSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAATMPTEHIYLGQSSGRIGEWISQLPV
IGAPFGRYLRSKAAHVHEKPSTPPGNMTALVIYLLSCWRAYKFHKMLCKNQQGYLLITDR
YPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFA
RKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS
>gi|223713543|gb|ACDM01000055.1| GENE    58     53380  -     54138    589    252 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_3479 NR:ns ## KEGG: ECIAI39_3479 # Name: yghR # Def: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain # Organism: E.coli_IAI39 # Pathway: not_defined # 1     252       1     252     252     486   99.0  1e-136
MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTNDLVKSLQQHWQTERRYLGLLS
GEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQR
LAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQKMAQYRPELI
IRLGIDIDTAISRKPDHDYAELQDKIGVMSTIGYNGTKILEIDSRAPYSEVLEQAQKAVS
LVAIVSDRRSLT
>gi|223713543|gb|ACDM01000055.1| GENE    59     54184  -     55533    920    449 aa, chain + ## HITS:1  COG:yghQ KEGG:ns NR:ns ## COG: yghQ COG2244 # Protein_GI_number: 16130883 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 42     355      12     325     325     587   99.0  1e-167
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQS
YAKSISDFIKFQAWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLP
FLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSV
VAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARHIKGAWS
FVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEV
MRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLIQVMLG
AIVISMLGFPQESLLLMAGKQRAFLVAQTIASIGYIVLLFMFCHLFGVLGAAFAYFGGQC
LDVVLSLIPTLKAFFQRHSLLYNAAGEKS
>gi|223713543|gb|ACDM01000055.1| GENE    60     55533  -     56357    464    274 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_3477 NR:ns ## KEGG: ECIAI39_3477 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1     274       1     274     274     545  100.0  1e-154
MMRKYFPLEASERLFVAVEEDDVVDAQVSLPPTIALSCTTEIIHDNYALCLQFWLNGVNR
QELLRLICKQAKGDELTADERKQFKYMRARYKHLRFAQRLYLKKHQAGFLFGKTTVFLGR
FQDGFRNGKKNIVSYYGNLLRVYLSSPVWSLVNYSLRHSQLESVSGFIAYRQKQMHTLKE
IIAKPRLTGREFHDVRKIISQQVSYYDTLRSLDPENKEALQISRFLAAINGLMGDKHDDM
VADDMENRQSYDAPVALDSDIRQRLELLISRFPL
>gi|223713543|gb|ACDM01000055.1| GENE    61     56369  -     56929    492    186 aa, chain + ## HITS:1  COG:ytfJ KEGG:ns NR:ns ## COG: ytfJ COG3054 # Protein_GI_number: 16132038 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Escherichia coli K12 # 1     184       1     183     184     210   54.0  1e-54
MSSRLIIALIIMLLAQGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLAG
KVRIIQYIAGRKSAKKKNSLLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIEK
NKRRYPWAQFVIDGNGLGRVAWRLPEQSSTILVLNKDGQIQWAKDGSLTPEEVDHVIALA
QKLINE
>gi|223713543|gb|ACDM01000055.1| GENE    62     56960  -     58030   1017    356 aa, chain + ## HITS:1  COG:PA3828 KEGG:ns NR:ns ## COG: PA3828 COG0795 # Protein_GI_number: 15599023 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pseudomonas aeruginosa # 3     343       2     351     372     124   29.0  3e-28
MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA
LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY
GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST
ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP
NVKRKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQGRFSTLLPL
TLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVARDFSLLQKFSR
>gi|223713543|gb|ACDM01000055.1| GENE    63     58027  -     59106    886    359 aa, chain + ## HITS:1  COG:VC2499 KEGG:ns NR:ns ## COG: VC2499 COG0795 # Protein_GI_number: 15642495 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Vibrio cholerae # 33     352      34     352     356     148   30.0  2e-35
MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT
LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW
VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD
DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM
PGNTFSVRQLNHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSPG
MGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYWYDRQH
>gi|223713543|gb|ACDM01000055.1| GENE    64     59141  -     60313   1173    390 aa, chain - ## HITS:1  COG:CC1162 KEGG:ns NR:ns ## COG: CC1162 COG0156 # Protein_GI_number: 16125414 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Caulobacter vibrioides # 1     388       1     389     404     402   53.0  1e-112
MGLYDKYARLAGERLQFSDNGLTPFGTCIDEVYSATEGRIGNKKVILAGTNNYLGLTFNH
DAIAEGQAALAAQGTGTTGSRMANGSYAPHLALEKEIAEFFNRPTAIVFSTGYTANLGVI
SALADHNAVVLLDADSHASIYDACSLGGAEIIRFRHNDAKDLERRMVRLGERAKEAIIIV
EGIYSMLGDVAPLAEIVDIKRRLGGYLIVDEAHSFGVLGATGRGLAEAVGVEDDVDIIVG
TFSKSLASIGGFAVGSEAMEVLRYGSRPYIFTASPSPSCIATVRSSLRTIASQPELRQKL
MDNANHLYDGLQKLGYELSSHISPVVPVIIGSKEDGLRIWRELISLGVYVNLILPPAAPA
GITLLRCSVNAAHSHEQIDAIIQAFATLKQ
>gi|223713543|gb|ACDM01000055.1| GENE    65     60313  -     60561    288     82 aa, chain - ## HITS:1  COG:no KEGG:S3224 NR:ns ## KEGG: S3224 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      82       1      82      82     124  100.0  1e-27
MVNREIVMDYILSCLQDLVENGVEIKPDSDLVNDLGLESIKVMDLLMMLEDRFDISIPIN
ILLDVKTPAQLMETLLPWLENK
>gi|223713543|gb|ACDM01000055.1| GENE    66     60593  -     61507    810    304 aa, chain - ## HITS:1  COG:CC1164 KEGG:ns NR:ns ## COG: CC1164 COG0702 # Protein_GI_number: 16125416 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Caulobacter vibrioides # 5     287       9     288     317     120   33.0  4e-27
MNQTVAVTGATGFIGKYIIDNLLARGFHVRALTRTARAHVNDNLTWVRGSLEDTHSLSEL
VTGASAVVHCAGQVRGHKEEIFTRCNVDGSLRLMQTAKESGFCQRFLFISSLAARHPELS
WYANSKHVAEQRLTAMADEITLGVFRPTAVYGPGDKELKPLFDWMLRGLLPRLGTPETQL
SFLHVTDFAQAVGQWLSAETVQTQTYELCDGVAGGYDWQRVQQLVADVRCGSVRMVGIPL
PLLTCLADISTALSRLAGKEPMLTRSKIRELTHADWSASNNRISEDINWFPGISLEHALR
NGLF
>gi|223713543|gb|ACDM01000055.1| GENE    67     61504  -     63195   1227    563 aa, chain - ## HITS:1  COG:CC1165 KEGG:ns NR:ns ## COG: CC1165 COG0318 # Protein_GI_number: 16125417 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Caulobacter vibrioides # 1     548      11     560     567     445   43.0  1e-124
MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKG
DRVALIAETSSGFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSGKLQGLLASCQPAAIIT
GDEWLPLVNAATHNNNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRG
VIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQ
DFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISA
EQLHQFAECFRQVNFDDKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA
PDAETRAVSTFVNCGKALPEHGIEIRNEAGIPVAERVVGHICISGPSLMSGYFGDQISQD
EIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA
FVTAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVTADIDLLPPHSIPRTSSGKPA
RAEAKKRYQKAYAASLHVQESLA
>gi|223713543|gb|ACDM01000055.1| GENE    68     63599  -     64741    961    380 aa, chain + ## HITS:1  COG:no KEGG:c3711 NR:ns ## KEGG: c3711 # Name: yghO # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     380      23     402     402     800  100.0  0
MECDLLMIKIEKVINKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIW
QAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQ
GASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQ
RTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEF
ATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKV
SGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNN
MLERIGAEPYKRYRLYEKQI
>gi|223713543|gb|ACDM01000055.1| GENE    69     64817  -     65656    636    279 aa, chain - ## HITS:1  COG:glcC KEGG:ns NR:ns ## COG: glcC COG2186 # Protein_GI_number: 16130880 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 24     275       1     252     254     474  100.0  1e-133
MRDVRVLRVKNRKIGPTCARGPGMKDERRPICEVVAESIERLIIDGVLKVGQPLPSERRL
CEKLGFSRSALREGLTVLRGRGIIETAQGRDSRVARLNRVQDTSPLIHLFSTQPRTLYDL
LDVRALLEGESARLAATLGTQADFVVITRCYEKMLAASENNKEISLIEHAQLDHAFHLAI
CQASHNQVLVFTLQSLTDLMFNSVFASVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVA
QRAARDHVRTVKKNLHDIELEGHHLIRSAVPLEMNKVGM
>gi|223713543|gb|ACDM01000055.1| GENE    70     65838  -     67337   1565    499 aa, chain + ## HITS:1  COG:glcD KEGG:ns NR:ns ## COG: glcD COG0277 # Protein_GI_number: 16130879 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1     499       1     499     499    1002  100.0  0
MSILYEERLDGALPDVDRTSVLMALREHVPGLEILHTDEEIIPYECDGLSAYRTRPLLVV
LPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILDINPVGR
RARVQPGVRNLAISQAVAPHNLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLL
KIEVQTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVTTEVTVKLLPKPPVARVLLAS
FDSVEKAGLAVGDIIANGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVES
DVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPR
RALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELC
VEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRCAE
FGAMHVHHGHLPFPELERF
>gi|223713543|gb|ACDM01000055.1| GENE    71     67337  -     68389   1075    350 aa, chain + ## HITS:1  COG:glcF_1 KEGG:ns NR:ns ## COG: glcF_1 COG0277 # Protein_GI_number: 16130878 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1     318       1     318     369     629   97.0  1e-180
MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQTLDVRCHRGIVNYDPTE
LVITARAGTPLVAIEAALESAGQMLPCEPPHYGEEATWGGMVACGLAGPRRPWSGSVRDF
VLGTRIITGTGKHLRFGGEVMKNVAGYDLSRLMAGSYGCLGVLTEISMKVLPRPRASLSL
RREISLQEAMNEIALWQLQPLPISGLCYFDNALWIRLEGGEGSVKAARELLGGEEVAGQF
WQQLREQQLPFFSLPGTLWRISLPSDAPMIDLPGEQLIDWGGALRWLKSTADDNQIHRIA
RNAGGHATRFSAGDGGFAPLPAPLFRYHQQLKQQLDPCGVFNPGRMYAEL
>gi|223713543|gb|ACDM01000055.1| GENE    72     68400  -     69623   1009    407 aa, chain + ## HITS:1  COG:glcF_2 KEGG:ns NR:ns ## COG: glcF_2 COG0247 # Protein_GI_number: 16130878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli K12 # 16     407       1     392     392     774   98.0  0
MQTQLTEEMRQNARALEADSILRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE
GNDVTLKTQEHLDRCLTCRNCETTCPSGVRYHNLLDIGRDIVEQKVKRPLPERMLREGLR
QVVPRPAVFRALTQVGLVLRPFLPEQVRAKLPAETVKAKPRPPLRHKRRVLMLEGCAQPT
LSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWPAIEAG
VEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLAIRGDK
KLAFHCPCTLQHAQKLNGEVEKVLLRLGFTLTDVPDSHLCCGSAGTYALTHPDLARQLRD
NKMNALESGKPEMIVTANIGCQTHLASAGHTSVRHWIEIVEQALDKE
>gi|223713543|gb|ACDM01000055.1| GENE    73     69628  -     70032    639    134 aa, chain + ## HITS:1  COG:glcG KEGG:ns NR:ns ## COG: glcG COG3193 # Protein_GI_number: 16130877 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol # Organism: Escherichia coli K12 # 1     118       1     118     134     198  100.0  2e-51
MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLALSRMDDCAPIAAYISQE
KARTAALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVVVDGQIIGAVGVSGLTGAQ
DAQVAKAAAAVLAK
>gi|223713543|gb|ACDM01000055.1| GENE    74     70054  -     72225   2452    723 aa, chain + ## HITS:1  COG:glcB KEGG:ns NR:ns ## COG: glcB COG2225 # Protein_GI_number: 16130876 # Func_class: C Energy production and conversion # Function: Malate synthase # Organism: Escherichia coli K12 # 1     723       1     723     723    1459   98.0  0
MSQTITQGRLRIDANFKRFVDEEVLPGVELDVAAFWRNFDEIVHDLAPENRQLLAERDRI
QAALDEWHRSNPGPVKDKEAYKSFLRELGYLVLQPERVTVETTGIDSEITSQAGPQLVVP
AMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQRGEQVIAWVRRFLDESLPL
ENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIEL
QIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQE
KMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEG
ILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFANKLFTRIETMLGMAPNTL
KMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTP
WIKAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTA
ATLHALHYHQTNVQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNV
QGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHIANWLRHGILTKDQVQASL
ENMAKVVDQQNAGDPAYRPMVENFANSCAFKAACDLIFLGVKQPNGYTEPLLHAWRLREK
ENH
>gi|223713543|gb|ACDM01000055.1| GENE    75     72581  -     74263   1753    560 aa, chain + ## HITS:1  COG:yghK KEGG:ns NR:ns ## COG: yghK COG1620 # Protein_GI_number: 16130875 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Escherichia coli K12 # 1     560       1     560     560     911   99.0  0
MVTWTQMYMPMGGLGLSALVALIPIIFFFVALAVLRLKGHVAGAITLILSILIAIFAFKM
PIDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDIIRSSVISITDDQRLQVLL
IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANTAPVAFGALGVPILVA
GQVTGIDPFDIGAMAGRQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGGSFAVTQFF
TSNYIGPELPDITSALVSIVSLSLFLKVWRPKNTETAISMGQSAGAMVVNKPSSGGPVPS
EYRLGQIIRAWSPFLILTVLVTIWTMKPFKALFAPGGAFYSLVINFQIPHLHQQVLKAAP
IVAQPTPMDAVFKFDPLSAGGTAIFIAAIISIFILGVGIKKGIGVFAETLISLKWPILSI
GMVLAFAFVTNYSGMSTTLALVLAGTGVMFPFFSPFLGWLGVFLTGSDTSSNALFGSLQS
TTAQQINVSDTLLVAANTSGGVTGKMISPQSIAVACAATGMVGRESELFRYTVKHSLIFA
SVIGIITLLQAYVFTGMLVS
>gi|223713543|gb|ACDM01000055.1| GENE    76     74748  -     79310   4062   1520 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_3460 NR:ns ## KEGG: ECIAI39_3460 # Name: yghJ # Def: inner membrane lipoprotein # Organism: E.coli_IAI39 # Pathway: not_defined # 1    1520       7    1524    1524    2781   94.0  0
MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPSVDSGSGTLPEVKPDPTPTPEPTP
EPTPDPEPTPDPTPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFTPG
NTVSCVVGSTTIATFNTQSEAARSLRAVDKVSFSLEDAQELANSENKKTNAISLVTSSDS
CPADAEQLCLTFSSVVDRARFEKLYKQIDLATDNFSKLVNEEVENNAATDKAPSTHTSTV
VPVTTEGTKPDLNASFVSANAEQFYQYQPTEIILSEGQLVDSLGNGVAGVDYYTNSGRGV
TDENGKFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQ
NNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLDEGDQNVVLPNEFIEQFKTGQAKEI
DTAICAKTNGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYQSVSKFHVFHDSTNFYG
STGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVT
RDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDM
KHFMQNVLRYLSDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVE
HLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKG
GSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWV
YERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDE
ADHKTEDSLKAAKAKIFEKFPGLKECKDPTYHYEVNCLEYRPGTGVPVTGGMYVPQYTQL
SLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNKI
EYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDELKKSLVDNNMIYGEKSVNKAGM
MNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSAEGEKVTETISLYSNPTKWF
AGNMQSTGLWAPAQKEVTIESTASVPVTVTVALADDLTGREKHEVALNRPPKVTKTYELK
ANGEMKFTVPYGGLIYIKGNSPQNESAEFTFTGVVKAPFYKDGAWKNALNSPAPLGELES
DAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSMNDFYGRNDEDGKHRMFTYKNLTGHK
HRFTNDVQISIGDAHSGYPVMNSSFSTNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGA
TEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAWARGGAGDRLLMYAQLKEW
AEKNFDIKTWYPDGNLPAFYSEREGMKGWNLFQLMHRKARGDEVGKTKFGERNYCAESNG
NAADKLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMNFEGGVSQSAYETLAALNLP
KPQQGPETINQVTEHKMSAE
>gi|223713543|gb|ACDM01000055.1| GENE    77     79440  -     80249    435    269 aa, chain + ## HITS:1  COG:pppA KEGG:ns NR:ns ## COG: pppA COG1989 # Protein_GI_number: 16130872 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Escherichia coli K12 # 1     269      42     310     310     475   96.0  1e-134
MFFDVFQQYPAAIPVLATVGGLIIGSFLNVVIWRYPIMLRQQMAEFHGEMPSAQSKISLA
LPRSHCPHCQQTIRIRDNIPLLSWLMLKGRCRDCQAKISKRYPLVELLTALAFLLASLVW
SESGWGLAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTG
VLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGPLSLPNVALIASCCGLIYAV
ITKRGSTTLPFGPCLSLGGIATLYLQALF
>gi|223713543|gb|ACDM01000055.1| GENE    78     80315  -     80725    316    136 aa, chain + ## HITS:1  COG:no KEGG:JW2938 NR:ns ## KEGG: JW2938 # Name: yghG # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     136       1     136     136     227  100.0  1e-58
MSIKQMPGRVLISLLLSVTGLLSGCASHNENASLLAKKQAQNISQNLPIKSAGYTLVLAQ
SSGTTVKMTIISEAGTQTTQTPDAFLTSYQRQMCADPTVKLMITEGINYSITINDTRTGN
QYQRKLDRTTCGIVKA
>gi|223713543|gb|ACDM01000055.1| GENE    79     80743  -     81702    701    319 aa, chain + ## HITS:1  COG:yghF KEGG:ns NR:ns ## COG: yghF COG3031 # Protein_GI_number: 16130870 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulC # Organism: Escherichia coli K12 # 44     319       1     276     288     486   92.0  1e-137
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKVAHSL
WRYFSFSAEYTAVSPSANKPLRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPV
AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKM
ERLSLAEEKRPTIAVTSKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS
IQLTVLRKGARYDISIALR
>gi|223713543|gb|ACDM01000055.1| GENE    80     81732  -     83792   2088    686 aa, chain + ## HITS:1  COG:gspD KEGG:ns NR:ns ## COG: gspD COG1450 # Protein_GI_number: 16131204 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Escherichia coli K12 # 18     665       5     639     654     502   44.0  1e-142
MFWRDMTLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIET
VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS
SAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS
NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV
LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR
AQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTV
ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI
EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI
GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT
AQPVLPAQNQALPPEVRAFLNAGRTR
>gi|223713543|gb|ACDM01000055.1| GENE    81     83792  -     85285   1478    497 aa, chain + ## HITS:1  COG:VC2732 KEGG:ns NR:ns ## COG: VC2732 COG2804 # Protein_GI_number: 15642726 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Vibrio cholerae # 14     497      16     503     503     632   67.0  0
MVPVAQETTANTVRLPYSFSRRFSLVAWCEASLEILHVHPLSLSVLQELQRGLNASFTLR
QIDEAEFEQRLNAVWQRDSSEARQLMEDLGSAEDFFTLAEELPETEDLLESDDDAPIIKL
INAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLYEMLRPGRKLASLLVSRIKVMARLD
IAEKRVPQDGRIALLLGGRAIDVRVSTMPSAWGERVVLRLLDKNQARLTLERLGLSLELT
AQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNHSRNILTVEDPIEYMIEGIGQTQ
VNTRVGMTFARGLRAILRQDPDVVMVGEIRDTETAEIAVQASLTGHLVLSTLHTNTAVGA
ITRLQDMGVEPFLLSSSLTGVMAQRLVRTLCPDCRQSAPATDEEKRLLGITDARTVTLYH
PQGCPACNHKGFRGRTAIHELIVVDATLRDLIHRQAGELELERYVRQHSAGIRSNGIEKV
LAGETSLDEVLRVTMEA
>gi|223713543|gb|ACDM01000055.1| GENE    82     85285  -     86508   1236    407 aa, chain + ## HITS:1  COG:VC2731 KEGG:ns NR:ns ## COG: VC2731 COG1459 # Protein_GI_number: 15642725 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Vibrio cholerae # 1     405       1     404     406     417   56.0  1e-116
MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARLNASTGGMLQRRRHA
HRRVVAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS
DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV
VATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDMLQTSGVYWLAGLLGLLVLG
QRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS
ANRYVEQQLLLAADRVREGSSLRAALADLRLFPPMMLYMIASGEQSGELETMLEQAAVNQ
EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMVGM
>gi|223713543|gb|ACDM01000055.1| GENE    83     86525  -     86980    621    151 aa, chain + ## HITS:1  COG:VC2730 KEGG:ns NR:ns ## COG: VC2730 COG2165 # Protein_GI_number: 15642724 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Vibrio cholerae # 6     151       2     146     146     230   76.0  8e-61
MNSLSRTQKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENAL
DMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRLPKDPWGNDYQYLSPGEKG
LFDVYTLGADGQENGEGAGADIGNWNLQEFQ
>gi|223713543|gb|ACDM01000055.1| GENE    84     86984  -     87547    378    187 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3440 NR:ns ## KEGG: ECUMN_3440 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_UMN026 # Pathway: Bacterial secretion system [PATH:eum03070] # 1     187       1     187     187     349   97.0  3e-95
MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDFLTRFAQFKDRAVIEGQ
TLGVLIDPPGYQFMQRRHGQWLSVSATRLSAQVTVPKQVQMLLQPGSDMWQKEYALELQR
RRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYSAAQNACWAVKLAHDGTLSLS
QCDERMP
>gi|223713543|gb|ACDM01000055.1| GENE    85     87544  -     87915    348    123 aa, chain + ## HITS:1  COG:VC2728 KEGG:ns NR:ns ## COG: VC2728 COG2165 # Protein_GI_number: 15642722 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Vibrio cholerae # 2     112       4     112     117      80   41.0  5e-16
MKRGFTLLEVMLALAIFALAAMAVLQIASGALSNQHVLEEKTVAGWVAENQTALLYLMTR
EQRAVSHQGESDMAGSRWYWRTTPLSTGNALLQAVDIEVSRHEDFSSVIQSRRAWFSAVG
GQQ
>gi|223713543|gb|ACDM01000055.1| GENE    86     87912  -     88517    351    201 aa, chain + ## HITS:1  COG:VC2727 KEGG:ns NR:ns ## COG: VC2727 COG4795 # Protein_GI_number: 15642721 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Vibrio cholerae # 2     201      10     211     221     119   38.0  4e-27
MRRTCAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVAGHDQKLNLMQQTMSFLNH
DLTQMMPRPVRGDQGQREPALLAGAGVLTSESEGMRFVRGGVVNPLMRLPRSNLLTVGYR
IHGGYLERLAWPLTDAAGSVKPTTQKLIPADSLRLQFHDGTRWQESWSSVQAIPVAVRIT
LHSPQWGEIERIWLLRGPQLS
>gi|223713543|gb|ACDM01000055.1| GENE    87     88514  -     89494   1007    326 aa, chain + ## HITS:1  COG:VC2726 KEGG:ns NR:ns ## COG: VC2726 COG3156 # Protein_GI_number: 15642720 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulK # Organism: Vibrio cholerae # 8     306       5     307     336     213   43.0  4e-55
MMITLPPKRGMALVVVLVLLAVMMLVTITLSSRMQQQLGRTRSQQEYQQALWYSASAESL
ALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRP
LAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQ
PLADISEMRVVQGMDAGLYQKLKPLVCALPMARQQININTLDVTQSVILEALFDPWLSPV
QARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTILSVDSNYFWLRSDITVNEIE
LTMNSLIVRMGPQHFSVLWHQTGESE
>gi|223713543|gb|ACDM01000055.1| GENE    88     89500  -     90669    764    389 aa, chain + ## HITS:1  COG:yghE KEGG:ns NR:ns ## COG: yghE COG3297 # Protein_GI_number: 16130869 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulL # Organism: Escherichia coli K12 # 104     389       1     286     286     517   95.0  1e-146
MLEIFFPLCAADPIRWQRHTPDVEHGIWPDVADERLQQWLQTDAIRLYIPGEWISVWQVE
LPDVPRKQIPTILPALLEEELNQDIDELHFAPLKIDQQLATVAVIHQQHMRNIAQWLQAN
GITRATVAPDWMSIPCGFMAGDAQRVICRIDECRGWSAGRALAPVMFRAQLNEQNLPISL
TVVGIAPEELSAWAGADAERLTVTALPAITTYGESEGNLLTGPWQPRVSYRKQWARWRVM
ILPILLILVALVVERGVTLWSVSEQVAQSRTQAEKQFLTLFPEQKRIVNLRSQVTMALKK
YRPQADDTDLLAELSAIASTLKSASLSDIEMRGFTFDQKRQTLHLQLRAANFASFDKLRS
ALAADYVVQQDALQKEGDAVSGGVTLRRK
>gi|223713543|gb|ACDM01000055.1| GENE    89     90671  -     91207    552    178 aa, chain + ## HITS:1  COG:yghD KEGG:ns NR:ns ## COG: yghD COG3149 # Protein_GI_number: 16130868 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulM # Organism: Escherichia coli K12 # 1     178       1     178     178     319   92.0  2e-87
MLRDKFIHYFQQWSERQLSRGEHWLTQHLAGRSPREKGMLLAAAVFLFSAGYYVLIWQPL
SERIEQQETMLQQLVAMNARLKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRI
AERGENIQVWIDPVVFNDLLNWLKALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
>gi|223713543|gb|ACDM01000055.1| GENE    90     92264  -     93040    565    258 aa, chain + ## HITS:1  COG:SMb20822 KEGG:ns NR:ns ## COG: SMb20822 COG1682 # Protein_GI_number: 16264310 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Sinorhizobium meliloti # 15     250      29     264     274     123   33.0  3e-28
MARSGFEVQKVTVEALFLREIRTRFGKFRLGYLWAILEPSAHLLILLGIFGYIMHRTMPD
ISFPVFLLNGLIPFFIFSSISNRSVGAIEANQGLFNYRPVKPIDTIIARALLETLIYVAV
YILLMLIVWMAGEYFEITNFLQLVLTWSLLIILSCGVGLIFMVVGKTFPEMQKVLPILLK
PLYFISCIMFPLHSIPKQYWSYLLWNPLVHVVELSREAVMPGYISEGVSLNYLAMFTLVT
LFIGLALYRTREEAMLTS
>gi|223713543|gb|ACDM01000055.1| GENE    91     93037  -     93714    171    225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     202       1     218     245 70  25 3e-11
MIKIENLTKSYRTPAGRHYVFKNLNIEIPSGKSVAFIGRNGAGKSTLLRMIGGIDRPDSG
KIITNKTISWPVGLAGGFQGSLTGRENVKFVARLYAKQEELKEKIEFVEEFAELGKYFDM
PIKTYSSGMRSRLGFGLSMAFKFDYYIVDEVTAVGDARFKEKCAQLFKERHKESSFLMVS
HSLNSLKEFCDVAIVFKDDNAVGFYEDVHEGIKSYQINENTTIKI
>gi|223713543|gb|ACDM01000055.1| GENE    92     94330  -     97410    739   1026 aa, chain + ## HITS:1  COG:jhp0540 KEGG:ns NR:ns ## COG: jhp0540 COG5610 # Protein_GI_number: 15611607 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Helicobacter pylori J99 # 309     630      18     310     591     132   31.0  3e-30
MFGIFSRAPFPAYGLLDPCGLYEYSYQYKYADKIRAEEISEEEKEVIKLLRRQSSRALAA
YHPLKKYISSLYEKYDRLVVLACQVDNYFSYNSCTNYPSQYAMVEDVLSQVPSNIGVIVT
EHGYKRQISDEQIESLNEKYSNFIYFSKKDVFTPSQFILPYVDGALSVSSSIGYQAALWQ
IPYFGLGKSQVDVLCSNTSLMSFVNDVEKGIKIDRDNILYVLLSKVHLSHKNDLFNGKSY
LNKLKDLFNKFTSNCDEYEYFNTKKSIDEVRKDIICGNREWLLKKNFIDSKLVPEVDHLR
VAMSHSKAISYDLFDTLVERDFVEPHELFNLIESRVRNELNNKNFPFYYVRRQAEIDLRR
ETRGEFEITLDEIYERFPRYFDLTLEQLEKIKNIEIDAEVELVHPKKEMVREFYFSQMIC
ESVSIITDIYLSQNVIERILQKVKISGYNKLLVSAETKTRKHNGTIYPEYLKYIRDNFDI
NAGQALHVGDNKQADGDMAKKHGIKTYVFQKAIDNYKKSLIADILRSSINHPGISSSVIN
GLFANKYHAGHWFKINKESIFNADEYNYGYMAIGPLVVGFTQWLYRRVNKLGIKKLYFLS
RDGWILKKTFDYFYPESSSGIKTEYLYSSRRTAMVASLRNIDDIIEVASQNFNARKLSDF
LSTRFGLDVDTVKKSVLEKYNYKHDTIVSPYFEFGKLIGFLKDIHHTILSNAKNERESYI
DYLRETGFENDCLNGGATVVDIGYSGSMQYYLKKILQCPCVNGFYFLTHHHSRDYFSNDH
FEGFLQNLDDHKIAYRHGLNDHVFIFEAALSSPEGSLIKMEGKGQEREMIFLEAEEEIVR
KNALLGTHRGVMDFVHDIKTRFGSYFKYIEFSPILSSQLILNFANNPNGIDAGMFASHEV
ENVFGGGSVCLISPLLDCYKDSNGTINPKIIDELLKASKWKRGASAYYNLVNGTQPRVNP
AKMPAPSVNPVVVKQTPQTTYAHPLKTTTQRKLAKLKKDPYLFFNDSQKPLLKSLRLFFK
NTSKLN
>gi|223713543|gb|ACDM01000055.1| GENE    93     97529  -     98518     71    329 aa, chain + ## HITS:1  COG:no KEGG:Pden_2282 NR:ns ## KEGG: Pden_2282 # Name: not_defined # Def: TPR repeat-containing protein # Organism: P.denitrificans # Pathway: not_defined # 35     230       1     192     354      94   31.0  4e-18
MSISLKNIDFAKGPVDSLHHDYYLWRGKNIEDKRLFLVFSSRGAGPGEFSFFKTFDALNV
NVLHVTPSDFSWYQKGLVGLGSDLPSAFKALSDRIDNFCIYHKIKQIICVGASMGGYGAL
IYGALSSRKIKTTLILFGTETILKLPYSKSSESEFDILKKFKDVRFLDYSDLDVNMIFGE
FDIVDTYCALSMRHDRNFSFFSCTSASHVVPEYLNRQIGIVNFFTDFLSGGRSFIGRGHI
ASELYPEDISPLLFSKQFTEEYNNALLCCLKKYPSFGFAWNRLGVYLHNIGDLAGSLAAL
KRAFFINPDYPNTIEHLNSVRNKLKTKNF
>gi|223713543|gb|ACDM01000055.1| GENE    94     98596  -     99804    477    402 aa, chain - ## HITS:1  COG:PM0772 KEGG:ns NR:ns ## COG: PM0772 COG3562 # Protein_GI_number: 15602637 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Pasteurella multocida # 1     389       4     397     408     279   38.0  8e-75
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLA
YYQTPKEFPGWLRDLHRQYDFDTILCFGDCRPLHKEAKRWAKSKGLRFLAFEEGYLRPQF
ITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTMKRIGHAMWYYLMGWHYRHEF
PRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGER
VIYVHDLPMPELLRHAKAVVTINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFW
QADFKPDMKLFKKFRGYLLVKTQVNGVYYGDRVRKQIKVKKL
>gi|223713543|gb|ACDM01000055.1| GENE    95     99839  -    101866   1013    675 aa, chain - ## HITS:1  COG:NMB0082 KEGG:ns NR:ns ## COG: NMB0082 COG3563 # Protein_GI_number: 15676015 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Neisseria meningitidis MC58 # 4     643      26     673     704     612   50.0  1e-175
MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGK
PVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAR
EAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAA
MAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQ
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYI
DPQTGEVSDLFTVLQWLQLQRRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRR
CTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIY
YDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGADFSLPAEAKDKKVIL
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLVGNRKGDIPAELTA
ELADYQALGADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHC
PRREQKLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQTPRKPMFITRKKAGRVI
RYYRKLIMFCKVRFG
>gi|223713543|gb|ACDM01000055.1| GENE    96    101863  -    102603    827    246 aa, chain - ## HITS:1  COG:FN0807 KEGG:ns NR:ns ## COG: FN0807 COG1212 # Protein_GI_number: 19704142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Fusobacterium nucleatum # 7     234       6     234     245     192   45.0  5e-49
MSKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEKAV
QAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPA
LPVATLCHAISAEEATEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYR
RDVLQNYSQLPESMPEQAESLEQLRLMSAGINIRTFEVAATGPGVDTPACLEKVRALMAQ
ELAENA
>gi|223713543|gb|ACDM01000055.1| GENE    97    102613  -    104289   1519    558 aa, chain - ## HITS:1  COG:Cj1444c KEGG:ns NR:ns ## COG: Cj1444c COG1596 # Protein_GI_number: 15792762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Campylobacter jejuni # 68     558      61     552     552     342   38.0  2e-93
MKLFKSILLIAACHAAQASAAIDINADPNLTGAAPLTGILNGQQSDTQNMSGFDNTPPPA
PPVVMSRMFGAQLFNGTSADSGATVGFNPDYILNPGDSIQVRLWGAFTFDGALQVDPKGN
IFLPNVGPVKVAGVSNSQLNALVTSKVKEVYQSNVNVYASLLQAQPVKVYVTGFVRNPGL
YGGVTSDSLLNYLIKAGGVDPERGSYVDIVVKRGNRVRSNVNLYDFLLNGKLGLSQFADG
DTIIVGPRQHTFSVQGDVFNSYDFEFRESSIPVTEALSWARPKPGATHITIMRKQGLQKR
SEYYPISSAPGRMLQNGDTLIVSTDRYAGTIQVRVEGAHSGEHAMVLPYGSTMRAVLEKV
RPNSMSQMNAVQLYRPSVAQRQKEMLNLSLQKLEEASLSAQSSTKEEASLRMQEAQLISR
FVAKARTVVPKGEVILNESNIDSVLLEDGDVINIPEKTSLVMVHGEVLFPNAVSWQKGMT
TEDYIEKCGGLTQKSGNARIIVIRQNGAAVNAEDVDSLKPGDEIMVLPKYESKNIEVTRG
ISTILYQLAVGAKVILSL
>gi|223713543|gb|ACDM01000055.1| GENE    98    104313  -    105461   1128    382 aa, chain - ## HITS:1  COG:Cj1445c KEGG:ns NR:ns ## COG: Cj1445c COG3524 # Protein_GI_number: 15792763 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 37     381      27     371     372     204   34.0  2e-52
MLIKVKSAVSWMRARLSAISLADIQKHLAKIIILAPMAVLLIYLAIFSQPRYMSESKVAI
KRSDDLNSGSLNFGLLLGASNPSSAEDALYLKEYINSPDMLAALDKQLNFREAFSHSGLD
FLNHLSKDETAEGFLKYYKDRINVSYDDKTGLLNIQTQGFSPEFALKFNQTVLKESERFI
NEMSHRIARDQLAFAETEMEKARQRLDASKAELLSYQDNNNVLDPQAQAQAASTLVNTLM
GQKIQMEADLRNLLTYLREDAPQVVSARNAIQSLQAQIDEEKSKITAPQGDKLNRMAVDF
EEIKSKVEFNTELYKLTLTSIEKTRVEAARKLKVLSVISSPQLPQESSFPNIPYLIACWL
LVCCLLFGTLKLLLAVIEDHRD
>gi|223713543|gb|ACDM01000055.1| GENE    99    105533  -    106516    783    327 aa, chain - ## HITS:1  COG:PM0525_1 KEGG:ns NR:ns ## COG: PM0525_1 COG0794 # Protein_GI_number: 15602390 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Pasteurella multocida # 23     218      43     237     238     256   62.0  5e-68
MSERHLPDDQSSTIDPYLITSVRQTLAEQGAALQNLSKQLDSGQYQRVLNLIMNCKGHVI
LSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEIL
KLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDA
LAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVMQHDVPAVQLDASFKTVIQRITSG
CQGMVMVEDAEGGLAGIITDGDLRRFMEKEDSLTSATAAQMMTREPLTLPEDTMIIEAEE
KMQKHRVSTLLVTNKANKVTGLVRIFD
>gi|223713543|gb|ACDM01000055.1| GENE   100    107315  -    107470    111     51 aa, chain - ## HITS:1  COG:no KEGG:ECED1_3592 NR:ns ## KEGG: ECED1_3592 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1      51       1      51      51      82   98.0  5e-15
MAALVVTWFNPVIKAFYMHLSAAGKTKKVALVDSMRKLLTILNAMLRKNEE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:09:38 2011
 Seq name: gi|223713542|gb|ACDM01000056.1| Escherichia sp. 4_1_40B cont1.56, whole genome shotgun sequence 
 Length of sequence - 4518 bp
 Number of predicted genes - 9, with homology - 9
 Number of transcription units - 1, operones - 1 average op.length -  9.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          2 -       341    286  ## c4577 hypothetical protein
     2     1 Op  2     .       -    CDS        338 -       715    243  ## ECED1_4987 toxin of the YeeV-YeeU toxin-antitoxin system
     3     1 Op  3     .       -    CDS        762 -      1136    262  ## APECO1_3487 hypothetical protein
     4     1 Op  4     .       -    CDS       1212 -      1433    346  ## EC55989_2261 conserved hypothetical protein; CP4-44 prophage
     5     1 Op  5     .       -    CDS       1502 -      1978    376  ## COG2003 DNA repair proteins
     6     1 Op  6     .       -    CDS       1994 -      2479    519  ## EcSMS35_4803 antirestriction protein
     7     1 Op  7     .       -    CDS       2570 -      2884    324  ## ECS88_3309 hypothetical protein
     8     1 Op  8   2/0.000   -    CDS       2889 -      3770    658  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Term      3975 -      4005   -0.5 
     9     1 Op  9     .       -    CDS       4143 -      4517    195  ## COG3596 Predicted GTPase
Predicted protein(s)
>gi|223713542|gb|ACDM01000056.1| GENE     1         2  -       341    286    113 aa, chain - ## HITS:1  COG:no KEGG:c4577 NR:ns ## KEGG: c4577 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     113       1     113     140     192   98.0  2e-48
MKLALTLEADSVNVQALNMGRIVVDVDGVNLIELINKVAENGYSLRVVDKRDATETPATS
ASPHQLPEDNTVIQSVMPLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDS
>gi|223713542|gb|ACDM01000056.1| GENE     2       338  -       715    243    125 aa, chain - ## HITS:1  COG:no KEGG:ECED1_4987 NR:ns ## KEGG: ECED1_4987 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system # Organism: E.coli_ED1a # Pathway: not_defined # 1     125      35     159     159     244   96.0  7e-64
MKTLPDTHVREASCCPSPVTIWHTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLC
DAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH
PEAKQ
>gi|223713542|gb|ACDM01000056.1| GENE     3       762  -      1136    262    124 aa, chain - ## HITS:1  COG:no KEGG:APECO1_3487 NR:ns ## KEGG: APECO1_3487 # Name: yeeU # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     123      21     144     145     236   92.0  2e-61
MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAY
HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLACEADTLGSCGYVYMAVYPTLAP
ATTS
>gi|223713542|gb|ACDM01000056.1| GENE     4      1212  -      1433    346     73 aa, chain - ## HITS:1  COG:no KEGG:EC55989_2261 NR:ns ## KEGG: EC55989_2261 # Name: yeeT # Def: conserved hypothetical protein; CP4-44 prophage # Organism: E.coli_55989 # Pathway: not_defined # 1      73       1      73      73     150  100.0  1e-35
MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDS
FGPYVRLMSVTLN
>gi|223713542|gb|ACDM01000056.1| GENE     5      1502  -      1978    376    158 aa, chain - ## HITS:1  COG:ECs2803 KEGG:ns NR:ns ## COG: ECs2803 COG2003 # Protein_GI_number: 15832057 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1     158       1     158     158     298   98.0  2e-81
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKAD
RLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
>gi|223713542|gb|ACDM01000056.1| GENE     6      1994  -      2479    519    161 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_4803 NR:ns ## KEGG: EcSMS35_4803 # Name: not_defined # Def: antirestriction protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     161       1     161     161     320   95.0  9e-87
MTTVSHNSTTPSVSVTTASGNNQSQLVATPVPDEQCISFWPQHFGLIPQWVTLEPRVFGW
MDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNVMNGNRAEMSPEAAGIAAC
LMTYSHHACRTECYAMTVHYYRLRDYALQHPEYDAIMRIID
>gi|223713542|gb|ACDM01000056.1| GENE     7      2570  -      2884    324    104 aa, chain - ## HITS:1  COG:no KEGG:ECS88_3309 NR:ns ## KEGG: ECS88_3309 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     104     169     272     272     188   98.0  4e-47
MQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENML
KGGISGRSARGKRIHTRAIHSIDTDIKLNRALWVMAETLLENMR
>gi|223713542|gb|ACDM01000056.1| GENE     8      2889  -      3770    658    293 aa, chain - ## HITS:1  COG:flu KEGG:ns NR:ns ## COG: flu COG3468 # Protein_GI_number: 16129941 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1     289      53     341    1091     401   87.0  1e-112
MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTSVPALAADTVVQAG
ETVSGGALENHDNQIVFGTTNGMTISTGLEYGPDNEVNTGGQWIQNGGIANNTTVTGGGL
QRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSG
AVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGGD
QTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVRGEA
>gi|223713542|gb|ACDM01000056.1| GENE     9      4143  -      4517    195    124 aa, chain - ## HITS:1  COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1     124     167     290     290     237   98.0  3e-63
GIQPSPAQEQNIREKTDAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLM
TRLQDELCTESVRGQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWN
WIFF
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:09:54 2011
 Seq name: gi|223713541|gb|ACDM01000057.1| Escherichia sp. 4_1_40B cont1.57, whole genome shotgun sequence 
 Length of sequence - 15626 bp
 Number of predicted genes - 14, with homology - 14
 Number of transcription units - 12, operones - 2 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        150 -      1034    535  ## COG0583 Transcriptional regulator
                               -    Prom      1108 -      1167    6.7 
     2     2 Tu  1   4/1.000   +    CDS       1283 -      2341    692  ## COG1073 Hydrolases of the alpha/beta superfamily
                               +    Term      2359 -      2393    4.3 
                               +    Prom      2376 -      2435    1.6 
     3     3 Tu  1     .       +    CDS       2518 -      3711    699  ## COG2814 Arabinose efflux permease
                               +    Prom      4034 -      4093    3.1 
     4     4 Tu  1     .       +    CDS       4126 -      4617   -289  ## c0299 hypothetical protein
                               +    Prom      5838 -      5897    1.5 
     5     5 Tu  1     .       +    CDS       6044 -      6244     79  ## c0304 hypothetical protein
                               -    Term      6056 -      6088   -0.1 
     6     6 Op  1     .       -    CDS       6147 -      6749    447  ## c0305 hypothetical protein
                               -    Term      6764 -      6792    1.4 
     7     6 Op  2     .       -    CDS       6843 -      7049    328  ## COG3311 Predicted transcriptional regulator
                               -    Prom      7298 -      7357    2.4 
                               -    Term      7328 -      7362    1.0 
     8     7 Tu  1     .       -    CDS       7433 -      8200    137  ## ECP_2999 hypothetical protein
                               +    Prom      9410 -      9469    2.1 
     9     8 Tu  1     .       +    CDS       9641 -     10240    134  ## c0309 hypothetical protein
                               +    Term     10335 -     10367    3.3 
    10     9 Op  1     .       +    CDS      10612 -     10995    229  ## c0310 hypothetical protein
    11     9 Op  2     .       +    CDS      10992 -     11417    248  ## c0311 hypothetical protein
                               +    Term     11636 -     11668    2.1 
                               +    Prom     11701 -     11760    1.9 
    12    10 Tu  1     .       +    CDS      11889 -     12455    437  ## c0313 hypothetical protein
                               +    Term     12473 -     12505    4.7 
                               +    Prom     12695 -     12754    7.1 
    13    11 Tu  1     .       +    CDS      12801 -     13502    189  ## gi|194436782|ref|ZP_03068882.1| hypothetical protein EC1011_2486
                               +    Term     13545 -     13584   -0.5 
    14    12 Tu  1     .       -    CDS      14233 -     14841    208  ## COG3464 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713541|gb|ACDM01000057.1| GENE     1       150  -      1034    535    294 aa, chain - ## HITS:1  COG:ECs0309 KEGG:ns NR:ns ## COG: ECs0309 COG0583 # Protein_GI_number: 15829563 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     294       7     300     300     504   83.0  1e-143
MAKRENYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLS
LTHAGELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQR
YPDIRLELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYG
FPQTPTDLVGHPCIAYQFGDGSLYAWELNQDGKKITHQPQGQWAFADSYMEAKAARLGLG
LAYVPEELVSDDIEQGALIRVLQCYSQRLEGSYIYYPHRNVSPALRAVIDTLRI
>gi|223713541|gb|ACDM01000057.1| GENE     2      1283  -      2341    692    352 aa, chain + ## HITS:1  COG:ECs0310 KEGG:ns NR:ns ## COG: ECs0310 COG1073 # Protein_GI_number: 15829564 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1     352      27     378     378     647   88.0  0
MSYADTTNPNAPVSQVEKWDKTFAESTKVDHRKVTFPNRYGITLVGDLYIPKDRGDRKMA
AIAVSGPFGAVKEQSSGLYAQTLAERGFVTLAFDPSYTGESGGYPRNVASPDINTEDFSA
AVDFLGLQKEVDRNRIGLLGICGWGGMALNDAAMDTRVKAVASSVMYDMSRAMGHGVGDG
KDRYTTADRRAVLQYLNMQRWKDAENGAFAPGGHDIYVDEKGNVTASDRILPETLPANSN
PVLKEFFDYYRMPRGFHARSVNSTSAWNATMPLSFMNMPLLSYANEVTIPTLIVTGEKAH
SRYFAEDAFKAIGSKEKELVIVPEANHVDLYDNVAGKIPFAKFEQFFKANLR
>gi|223713541|gb|ACDM01000057.1| GENE     3      2518  -      3711    699    397 aa, chain + ## HITS:1  COG:ECs0311 KEGG:ns NR:ns ## COG: ECs0311 COG2814 # Protein_GI_number: 15829565 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli O157:H7 # 1     396       1     396     397     455   69.0  1e-128
MSTVSLKQLYGKTHAYWSGVFAMTLCVFVLIASEFMPVSLLTLIAHDLHVTEGLAGQGIA
VSGALAVLTSLTISRITGDLNRKYLLLGLTALMAISGIVITIAPDYPVYMLGRALIGIVI
GGFWSMSAATAIRLVPKQHVPRALAIFNGGNALATVVAAPLGSYLGTTIGWRGAFLCLVP
LAIAAFIWQWVSLPPMESDKTQKLQRSVLRLFSVAIVPTGLLACGLFFMGQFALFTYVRP
FLESVTRVGPSDLSLILLAIGVAGFVGTMIVSTFLNTIFYKTLIMIPLLMAAITGALLLV
GHHIWAVAVLLSLWGLLATAAPTGWWTWIARALPEDAETGGGLMVAVIQLSIALGSTAGG
LVFDSLGWRSAFGLSGLLLLGAVAMTCATSRQNRKAQ
>gi|223713541|gb|ACDM01000057.1| GENE     4      4126  -      4617   -289    163 aa, chain + ## HITS:1  COG:no KEGG:c0299 NR:ns ## KEGG: c0299 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 23     163       1     141     141     259   99.0  3e-68
MYVAELVTGDPAVFNSESCAAHLPQNPGTPAQSFHSTVFLGGTTTSGNTFRLFVDFSGQF
QRNGTISTFITPFLLLPGTFQFIHNIAALLAFLPILKMRTKHPYMMYRLNCQGLVSESLR
LACSFRNVPVMKNRKFSLCCKMYPLILRFRFLCVFNSLYLLSF
>gi|223713541|gb|ACDM01000057.1| GENE     5      6044  -      6244     79     66 aa, chain + ## HITS:1  COG:no KEGG:c0304 NR:ns ## KEGG: c0304 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1      66       1      66      66     121  100.0  6e-27
MAQYDDDEHALQVSMQGRGYHHFRILPHLPETTGISYGYRQPLCGMPGARTDPSDPSVLR
SASDGR
>gi|223713541|gb|ACDM01000057.1| GENE     6      6147  -      6749    447    200 aa, chain - ## HITS:1  COG:no KEGG:c0305 NR:ns ## KEGG: c0305 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     200       3     202     202     408   99.0  1e-113
MKPQYQTRYELLHESYQKWLTGFTRHAVSWGVCHPNIHYFHNLTPGWVSFNGEKPKIAIV
PRSLHRLIYGSDKRATPPLDDDLVVNLCTSEHLLVHHPMLEGILLSECERLRQRSLANKL
ISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTENLKRKSEKELGEWIIDRQKQNAALT
DLMDQYVLLAYRTTVDGNRN
>gi|223713541|gb|ACDM01000057.1| GENE     7      6843  -      7049    328     68 aa, chain - ## HITS:1  COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 9      58      15      64      65      78   70.0  3e-15
MTTPVSLMDDQMVDMTFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAWLQ
ARIAQSRP
>gi|223713541|gb|ACDM01000057.1| GENE     8      7433  -      8200    137    255 aa, chain - ## HITS:1  COG:no KEGG:ECP_2999 NR:ns ## KEGG: ECP_2999 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1     255       9     263     263     494   95.0  1e-138
MTSDETLRIVDEYCHTHKLSRSKVINTLLNATAPVLNDINCYYQLAGELQSRLLNGVYQR
NLPHKRNVVSAEKYCLEIWENKLFTRSVLEFDSSNGVLYALKHKRHYRRDKMIGRVESRY
IKDICEYQMQLSGEKTKYACFIYIERTIYNHDNPPDETPVKSAVGNAVILLAKDVIYNEY
FFDLRKSFFVSVKDLMASGTKGIPETQKYPDVYCWIPLFSINSGVVITPVYKIDPRKPVT
VKKPDQITVVCNYRE
>gi|223713541|gb|ACDM01000057.1| GENE     9      9641  -     10240    134    199 aa, chain + ## HITS:1  COG:no KEGG:c0309 NR:ns ## KEGG: c0309 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     199       1     199     199     405   98.0  1e-112
MKTYNTNPGYEMDPQLLTHFNQHLDSLFGVYSKLLPFRMDFAYRKNTLSYRCACRYAMCA
EILRLINEVGEKLVGYAWVMEYTERKGLHIHFVGYLNGQSHRSSYLVSRLMGDIWRRVTG
GDGYYHWCRFNKNYPVNINHVIHYSDHKAVNALRYAISYLAKREQKECGIILKCSGLPEK
SNRGRPRLGSPLPETYSLV
>gi|223713541|gb|ACDM01000057.1| GENE    10     10612  -     10995    229    127 aa, chain + ## HITS:1  COG:no KEGG:c0310 NR:ns ## KEGG: c0310 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     127       3     129     129     239   99.0  2e-62
MYAKSFIAFDGNGRLTGARTAQTAPYDRYTCHLCGSALRYHPQYDTERPWFEHTDDGLTE
HGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASRHCRQCHHDYYGERYCTHSHTGHF
SEEGVAE
>gi|223713541|gb|ACDM01000057.1| GENE    11     10992  -     11417    248    141 aa, chain + ## HITS:1  COG:no KEGG:c0311 NR:ns ## KEGG: c0311 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     141       1     141     141     279   97.0  2e-74
MNGIKTGLGITPGEHIISADSALSRNIRQCFCLSCHGRLILQTDAQGAWFEHDLHVLSEQ
QKAACVVLNPEKSHPYIEDMEMFLSLLPVVLEWHCVMCEQFFHGKKFCEACGTGIYCRAV
CTKSVYSYQPDLFQDCGGAST
>gi|223713541|gb|ACDM01000057.1| GENE    12     11889  -     12455    437    188 aa, chain + ## HITS:1  COG:no KEGG:c0313 NR:ns ## KEGG: c0313 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     188       1     188     188     380   98.0  1e-104
MYTESNVKLSCNALWQKCVLATLYRAAATHPEIKLLQFKLIPGQGINKAIPSLMADFTGE
LHRLISEYLQCKRRKEQSVEPTPLYYLWSREAVANDTTPYLMVLLLNNDVWCKSREVVVL
RNLIEQAWGKVLGEDNSITHLVVYPEVLSLVFDAANTYNAEPAVLEQTARAYIESHGTIE
RHLGCSDF
>gi|223713541|gb|ACDM01000057.1| GENE    13     12801  -     13502    189    233 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|194436782|ref|ZP_03068882.1| ## NR: gi|194436782|ref|ZP_03068882.1| hypothetical protein EC1011_2486 [Escherichia coli 101-1] # 1     233       1     233     233     485  100.0  1e-135
MFGHLLRYFSFCKKDLLVFHPESDYSDNLHKAFSFTKRLGFNEEWNGVTKNKEYDYQDVF
SHVCLQSGVTDFSASAGQCLKWSHYFQPYFENILECRVWVTVGQLWKQERFIYNPSVADF
QRWSEKGIQPEDFRHHSGFNFHAWLTTENGVIVDVSFMSTLSRRLPEHLSEVSGSVIIGT
PETVLPEYKYVPMIVGQRIVEKIEKRSFIGFLAHDDIDLYTVPAILVPVWKEC
>gi|223713541|gb|ACDM01000057.1| GENE    14     14233  -     14841    208    202 aa, chain - ## HITS:1  COG:alr8016 KEGG:ns NR:ns ## COG: alr8016 COG3464 # Protein_GI_number: 17227390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 10     198     434     633     636      98   31.0  9e-21
MSTRPPKRGLLDPWREWLKEQRESGNYNASRIWREMVARGFTGSETIVRDAVAKWRKGWN
PPVTTAVRLPSVSRVSRWLMPWRITRDEENYASRFISLMCEKEPELKIAQQLALEFYRIL
KTQNKSQLSSWFTRVHESGSAEFRRVAAGMEADAAAICEAISSHWSNGVVEGHVNRLKML
KRQMYGRAGFELLRQRVMSPLA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:10:28 2011
 Seq name: gi|223713540|gb|ACDM01000058.1| Escherichia sp. 4_1_40B cont1.58, whole genome shotgun sequence 
 Length of sequence - 4130 bp
 Number of predicted genes - 4, with homology - 4
 Number of transcription units - 2, operones - 1 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       128 -       167    3.4 
     1     1 Tu  1     .       -    CDS        396 -      1121    422  ## COG2188 Transcriptional regulators
                               -    Prom      1180 -      1239    3.7 
                               +    Prom      1049 -      1108    3.1 
     2     2 Op  1   3/0.000   +    CDS       1244 -      2041    302  ## COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold
     3     2 Op  2     .       +    CDS       2073 -      3422   1073  ## COG0477 Permeases of the major facilitator superfamily
     4     2 Op  3     .       +    CDS       3428 -      4130    595  ## COG3053 Citrate lyase synthetase
Predicted protein(s)
>gi|223713540|gb|ACDM01000058.1| GENE     1       396  -      1121    422    241 aa, chain - ## HITS:1  COG:BH0914 KEGG:ns NR:ns ## COG: BH0914 COG2188 # Protein_GI_number: 15613477 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 11     218      14     220     248     100   29.0  3e-21
MHRNLPIYLQIREALRNGIAQNVYKQGERLPSENELAAQFNTTRATVVHAMQGLLTDGLI
ERIRGRGTFVKKPSIITVMDTQSLGFFEKDLVGVDKHLEYQLVEFAPVSTSELLRTKLML
SGKESIHRLLRLRLINQQPIAFEIRYMPSILALQIDKQELEVHALQNIFEQALRIEIQTI
ANQVHVALPSRDAAQKLKIKRSRPILVRQHTYLTAENKPVLWGETLYREEYEIHYSSHRQ
A
>gi|223713540|gb|ACDM01000058.1| GENE     2      1244  -      2041    302    265 aa, chain + ## HITS:1  COG:RSp0233 KEGG:ns NR:ns ## COG: RSp0233 COG3618 # Protein_GI_number: 17548454 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Ralstonia solanacearum # 4     256      39     291     302     231   48.0  1e-60
MIFDTHAHVFVRGLPLAEHCRYVPDYDATPESYLTHLDRFGIDVGILVQPSFLGTDNHYM
LEALRRYPTRFRGVAVVDPNITRCKLDEMAKLGVTGIRLNLVGVEIPDLTQPAWQHLLEH
IKALGWHVELHRAARDLPALITVLLKSGVKIVVDHFALPSQEEKQNDPGFQFLLEHAETQ
QIWLKLSGAYRNGSTETLNDNVAPLIPLLLQHFGPAHLLWGSDWPHTRYENVVNYQKTFE
LLTQQIPDKEMRNKILSVSAESLID
>gi|223713540|gb|ACDM01000058.1| GENE     3      2073  -      3422   1073    449 aa, chain + ## HITS:1  COG:AF0907 KEGG:ns NR:ns ## COG: AF0907 COG0477 # Protein_GI_number: 11498512 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Archaeoglobus fulgidus # 8     439      17     419     419      91   22.0  2e-18
MIIFYKKSWYKWIVLVVCILAYSSGNLVRWNYTGISQYLIGEWHIGKEELGILGSAFFYA
YAIGQSPWGTLTDILGGRRVISIGILITAIMFSLFAFAGGYHAAIIIRVLMGFVGAATFV
PCMAVLSRWFSKKERGMVLNIFSGTGGGLGELWSFLLMPLISLFMVGGATVLGLSSWRAS
TLIMAFVTLAIMILCFVGMRSDPSELGLPSVVEQETRKQAKEHSYARTLLNALRDPWFWV
ITFAWQGFTVSLRLLPAWLPIYAAAYYKQTQGLSSVEAMVAGGMIASVYVAGRILGTPVF
GKLSDFLLVSYNVPRTLIIACFHIFITVSMFALSHQMPSTFLFAVLVFVIGAAINMFPLV
NAVVAEIWPVKTGGALMGMVNTVGQLIGASALAYSGFMAEKFSIAGAGYSFEYRGIWYLA
MIFSSISILASLLAMHREKQSIRENALSH
>gi|223713540|gb|ACDM01000058.1| GENE     4      3428  -      4130    595    234 aa, chain + ## HITS:1  COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1     234      30     264     381     471   97.0  1e-133
MFNHIFTQVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTRDEKLIACGGIAGNIIKC
VAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYEALFRQCGFSTLTSVPGVMV
LMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTQGHRYLIQQAAAQCDWLHLFLVK
EDSSRFPYEDRLDLVLKGTADIPHLTVHRGSEYIISRATFPCYFIKEQSVINHC
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:10:29 2011
 Seq name: gi|223713539|gb|ACDM01000059.1| Escherichia sp. 4_1_40B cont1.59, whole genome shotgun sequence 
 Length of sequence - 1341 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          2 -      1246   1389  ## COG3051 Citrate lyase, alpha subunit
Predicted protein(s)
>gi|223713539|gb|ACDM01000059.1| GENE     1         2  -      1246   1389    414 aa, chain + ## HITS:1  COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1     414      97     510     510     811   99.0  0
SSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSG
ELNIDVAFLGVPSCDEFGNANGYSGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPA
SIEQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQS
LARNPNHIEISANQYANWGAKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRGASGG
HCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAER
LQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:10:32 2011
 Seq name: gi|223713538|gb|ACDM01000060.1| Escherichia sp. 4_1_40B cont1.60, whole genome shotgun sequence 
 Length of sequence - 7072 bp
 Number of predicted genes - 9, with homology - 9
 Number of transcription units - 5, operones - 3 average op.length -  2.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   +    CDS          3 -       212     76  ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase)
     2     1 Op  2     .       +    CDS        187 -      1074    580  ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase
     3     1 Op  3     .       +    CDS       1100 -      3697   2976  ## COG1049 Aconitase B
                               +    Term      3763 -      3814   13.6 
                               -    Term      3755 -      3797   12.1 
     4     2 Op  1     .       -    CDS       3946 -      4482    124  ## COG3436 Transposase and inactivated derivatives
     5     2 Op  2     .       -    CDS       4522 -      4707     93  ## EcSMS35_4770 hypothetical protein
                               -    Prom      4861 -      4920    3.9 
     6     3 Tu  1     .       -    CDS       4949 -      5461     84  ## UTI89_C1104 hypothetical protein
                               -    Prom      5599 -      5658    2.5 
                               +    Prom      5440 -      5499    2.5 
     7     4 Op  1   2/0.000   +    CDS       5624 -      6259    564  ## COG2721 Altronate dehydratase
     8     4 Op  2     .       +    CDS       6278 -      6778    410  ## COG2721 Altronate dehydratase
                               +    Term      6937 -      6979    2.1 
                               -    Term      6786 -      6840    0.8 
     9     5 Tu  1     .       -    CDS       6841 -      7038    166  ## COG1349 Transcriptional regulators of sugar metabolism
Predicted protein(s)
>gi|223713538|gb|ACDM01000060.1| GENE     1         3  -       212     76     69 aa, chain + ## HITS:1  COG:ECs0653 KEGG:ns NR:ns ## COG: ECs0653 COG3697 # Protein_GI_number: 15829907 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Escherichia coli O157:H7 # 1      69     115     183     183     142   98.0  1e-34
HPLGRLWDIDVLTPEGDILSRRDYSLPPRRCLLCEQSAAVCARGKTHQLTDLLNRMEALL
NDVDACNVN
>gi|223713538|gb|ACDM01000060.1| GENE     2       187  -      1074    580    295 aa, chain + ## HITS:1  COG:citG KEGG:ns NR:ns ## COG: citG COG1767 # Protein_GI_number: 16128596 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Escherichia coli K12 # 1     292       1     292     292     553   98.0  1e-157
MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDRINCGAHKDMALEDFHR
SALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDMFRATAGVNTHKGSIFSLG
LLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTNNSQLTAGQRLYQQLGLTGAR
GEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLLLMATNGDTNVASRGGEGGLRWL
QREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSPGGSADLLIVTWFLASLTGR
>gi|223713538|gb|ACDM01000060.1| GENE     3      1100  -      3697   2976    865 aa, chain + ## HITS:1  COG:ECs0122 KEGG:ns NR:ns ## COG: ECs0122 COG1049 # Protein_GI_number: 15829376 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Escherichia coli O157:H7 # 1     865       1     865     865    1691   99.0  0
MLKEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA
AYVKAGFLAAVAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS
HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD
DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV
GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN
LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA
LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM
TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH
SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM
QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA
ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDHRTLERRIQGMEKWLANPELLEA
DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA
GKLLDAHKGQLPTRLWVAPPTRMDSAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA
DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT
YRYLNFNQLSQYTEKADRVIFPSVV
>gi|223713538|gb|ACDM01000060.1| GENE     4      3946  -      4482    124    178 aa, chain - ## HITS:1  COG:ECs0330 KEGG:ns NR:ns ## COG: ECs0330 COG3436 # Protein_GI_number: 15829584 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 2     176     332     512     512     215   55.0  4e-56
MAHSRRRIHDVHVRVPTDITTEALQRIGELYATEAEVRGCSAEQRLAARKARAAPLMQSL
YDWIQTQMKTLSRHSDTAKAFAYLLKQWDGLNVYCSNGWVEIDNNIAENALRGVAVGRKN
WLFVGSDNGGEHAAVLYSLIGTCRLNNEEPENGCVTSLNISRTGRQTGYVICCPGKLN
>gi|223713538|gb|ACDM01000060.1| GENE     5      4522  -      4707     93     61 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_4770 NR:ns ## KEGG: EcSMS35_4770 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      56      52     107     207     110   92.0  2e-23
MDYVTSFELPFRLLLTCTPQLIAMLREEWDISQKNVVFNDKRFGCVYSLKASLCGVLQAD
A
>gi|223713538|gb|ACDM01000060.1| GENE     6      4949  -      5461     84    170 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C1104 NR:ns ## KEGG: UTI89_C1104 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     170       1     170     170     288   86.0  5e-77
MQITEALLSEPGDIWRFVQQAVDHWPRLLAVHFTLYSAEGNINGQQIHAFCTAFYRQVQE
HITERNHTASPAPPVVLRWLLEQHGEATIRCLLLLSQASICHLRVSATVDEECSQVVDLL
QQTWSGINAGGQCRLESCFQVDRSGTLDQFVVLKTTVQSLMLPVMATIAR
>gi|223713538|gb|ACDM01000060.1| GENE     7      5624  -      6259    564    211 aa, chain + ## HITS:1  COG:ECs4006 KEGG:ns NR:ns ## COG: ECs4006 COG2721 # Protein_GI_number: 15833260 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli O157:H7 # 7     210      73     349     523     285   57.0  6e-77
MVKSFAIGYTVRDVAKGSWIDESTVTLPKAPPLNTLPRATKVPEPLPPQEDYTFEGYRNA
DGSVGTKNLLGITTSVHCMADVEDYVVKIIERDLLPKYPSIDGVVDLNHLYGCGVAINVP
AAVVPIRTIHNIALNPNFGGEVMVVGMQCGGSDAFSGVTTNPAVGYDSDLLVRCGATVMF
SEVTEVRDAIHLLTPRAINEEVGRRLLEEMA
>gi|223713538|gb|ACDM01000060.1| GENE     8      6278  -      6778    410    166 aa, chain + ## HITS:1  COG:yhaG KEGG:ns NR:ns ## COG: yhaG COG2721 # Protein_GI_number: 16131020 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1     165     358     522     523     325   96.0  3e-89
MGKTDRSANPSPGNKKGGLANVVKKALGSIAKSGKTAIVEVLSPGQHPTKRGLIYAATPA
SDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTGLANHWFDLMDINAGTIAT
GEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVA
>gi|223713538|gb|ACDM01000060.1| GENE     9      6841  -      7038    166     65 aa, chain - ## HITS:1  COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1      60     210     269     269     110   96.0  7e-25
MCEVAERIIVVTDSSKFNRSSLHKIIDTKRIDMIIVDEGIPADSLEGLRKAGIEVILVGE
LASSL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:10:38 2011
 Seq name: gi|223713537|gb|ACDM01000061.1| Escherichia sp. 4_1_40B cont1.61, whole genome shotgun sequence 
 Length of sequence - 5923 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 2, operones - 1 average op.length -  4.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        14 -        73    3.4 
     1     1 Op  1   1/0.000   +    CDS         94 -       498    147  ## COG0191 Fructose/tagatose bisphosphate aldolase
                               +    Term       552 -       596    5.7 
                               +    Prom       500 -       559    6.5 
     2     1 Op  2   3/0.000   +    CDS        677 -      2182   1688  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
     3     1 Op  3     .       +    CDS       2194 -      3369    956  ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
     4     1 Op  4     .       +    CDS       3383 -      5272   1820  ## UTI89_C1098 hypothetical protein
                               +    Term      5331 -      5363    2.2 
                               -    Term      5314 -      5351    0.2 
     5     2 Tu  1     .       -    CDS       5441 -      5647    285  ## COG0313 Predicted methyltransferases
                               -    Prom      5855 -      5914    1.6 
Predicted protein(s)
>gi|223713537|gb|ACDM01000061.1| GENE     1        94  -       498    147    134 aa, chain + ## HITS:1  COG:ECs4017 KEGG:ns NR:ns ## COG: ECs4017 COG0191 # Protein_GI_number: 15833271 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 49     128     205     284     286     136   80.0  1e-32
MTQYELKQNERLISQKSELERKVKHLTEMVRQYKAGKTNGIYAVCFARFVLHGASDVPDE
YVRRTIGPGVCKVNVATELKIAFSDAIKAWFAENQQSNDPCFYMRVGMDTMKEVVRSKIA
VCGSANRLRLPAEA
>gi|223713537|gb|ACDM01000061.1| GENE     2       677  -      2182   1688    501 aa, chain + ## HITS:1  COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1     426      23     450     450     412   51.0  1e-114
MFPVSLLAFMGLLLGIGSSVTSPSTITSFPFLGGEFTQLTFGFIAMVGGFAFTYLPLMFA
MAIPMGLAKRNKAVAAFAGFVGYMLMNMSINYYLTATHQLADPATMKQVGQSIVLGIQTL
EMGVLGGIVVGVITYFLHDRFQDTVLHDAFAFFSGIRFVPIITALTLSLVGLFIPMLWEY
VALGIAGIGHIIQSTSVFGPFLYGVGVLLLKPFGLHHILLAMVRFTPAGGIEMVNGHEVA
GALNIFYAELKAGLPFSPHVTAFLSQGFMPTFIFGLPAVAYAIYRTARPENRPVIKGLLL
SGVLVSVVTGISEPIEFLFLFIAPALYAFHIVMSGLALMVMALLGVTIGNTDGGILDLLI
FGVMQGMSTKWYLLFPVGIAWFAIYFFVFRWYILKHNIKTPGREVDVQGAQQAVEANTRA
RGKSKYDHELILRALGGKENIESLDNCITRLRLVVKDMGLIDQQALKAAGALSVVVLDAH
SVQVIIGPQVQSVKTGIEALI
>gi|223713537|gb|ACDM01000061.1| GENE     3      2194  -      3369    956    391 aa, chain + ## HITS:1  COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1     386       1     377     384     291   34.0  1e-78
MFDFDKIIERQSDKCRKWDHTFVCSRFGDVPESFIPLWIADMDFTSPPAVIDGFRRIVEH
GTFGYTWCFDEFYDAVIAFQRKRHQVEVEKSWITLTYGTVSTLHYTVQAFCKPGDSVMMN
TPVYDPFAMAAQRQGVQVLANPLRVEENRYQLDFNLIEEQLKTHRPTLWFFCSPHNPSGR
IWREEEIRQVSDLCQRYGTILVVDEVHAEHILDGKFVSCLTSGCAAQDNLIVLTSPNKAF
NLGGLKTSYSMIPDDSLRQRFRQQLEKNSITSPNLFGVWGIILAYQHGLPWLDALNGYLQ
GNARYLADALQTHFPAWKMMNPESSYLAWIDVSADERSATQLTQHFARQAGVVIEDGSHY
VQNGENYLRINFGTQRYWLEQSINRMLKNDK
>gi|223713537|gb|ACDM01000061.1| GENE     4      3383  -      5272   1820    629 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C1098 NR:ns ## KEGG: UTI89_C1098 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     629      38     666     666    1197   93.0  0
MKKVLTLSLLALCVSHGAAAANYALNNDNIALLFDDTNSTVVVKDNKANHPLTPQELFFL
TLPDESKIHTADFKIKHVEKQDNAIVIDFTHPDFNVTVKLNLVKGKYANIGYTIAAVGQP
RDVAKITFFPTQKQSQAPYVDGAINSSPIVADSFFILPDKPIVNTYAYEATTNLNVELKT
PIQPEAPVSFTTWFGTFPETSQLRRSVNQFINDVRPRPYKPYLHYNSWMDIGFFTPYTEQ
DVLGRMDEWNKEFITGRGVALDAFLLDDGWDDLTGRWLFGTAFRNGFSKVREKADSLHSS
VGLWLSPWGGYNKPRDVRVSHAKEYGFETVDGKLALSGANYFKNFNERIIKLIKNEHITS
FKLDGMGNASSHIKGSSFASDFDASIALLHNMRSATPNLFINLTTGTDASPSWLFYADSI
WRQGDDINLYGSGTPVQQWMTYRDAETYRSIVRKGPLFPLNSLMYHGIVSAENAYYGLEK
VQTDSDFADQVWSYFATGTQLQELYITPSMLNKVKWDTLAKAAKWSKENASVLVDTHWIG
GDPTALAVYGWASWSKDKAILGLRNPSDKPQTYYLDLAKDFEIPTGDAAQFSLKAVYGSN
KTVPVEYKNATVITLQPLETLVFEAVPVN
>gi|223713537|gb|ACDM01000061.1| GENE     5      5441  -      5647    285     68 aa, chain - ## HITS:1  COG:STM3263 KEGG:ns NR:ns ## COG: STM3263 COG0313 # Protein_GI_number: 16766561 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Salmonella typhimurium LT2 # 10      68     190     253     287      87   70.0  4e-18
MAPLNDALYRYVMNSRLGTIHGTSVGELLAWIKEDKNPRKGEMVLIIEGHKAQDDELPAN
ALRTLALL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:11:42 2011
 Seq name: gi|223713536|gb|ACDM01000062.1| Escherichia sp. 4_1_40B cont1.62, whole genome shotgun sequence 
 Length of sequence - 181656 bp
 Number of predicted genes - 169, with homology - 168
 Number of transcription units - 98, operones - 42 average op.length -  2.7
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.243   -    CDS          2 -       464    288  ## COG3436 Transposase and inactivated derivatives
     2     1 Op  2     .       -    CDS        495 -       845    245  ## COG3436 Transposase and inactivated derivatives
     3     1 Op  3     .       -    CDS        929 -      1294    209  ## COG1846 Transcriptional regulators
                               +    Prom      2049 -      2108    7.3 
     4     2 Tu  1     .       +    CDS       2230 -      2547    221  ## COG2963 Transposase and inactivated derivatives
                               +    Term      2597 -      2649    0.1 
     5     3 Op  1  11/0.000   -    CDS       2952 -      3422    197  ## COG2801 Transposase and inactivated derivatives
                               -    Prom      3467 -      3526    2.1 
                               -    Term      3470 -      3504   -0.3 
     6     3 Op  2   3/0.514   -    CDS       3531 -      3962    159  ## COG2801 Transposase and inactivated derivatives
                               -    Term      4441 -      4484    8.1 
     7     4 Op  1     .       -    CDS       4485 -      5747    365  ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15
     8     4 Op  2     .       -    CDS       5811 -      6032     87  ## EC55989_4689 hypothetical protein
                               -    Prom      6065 -      6124    2.6 
                               -   TRNA       5945 -      6020   84.1  # Phe GAA 0 0
     9     4 Op  3     .       -    CDS       6126 -      6833    575  ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump
                               -    Prom      7042 -      7101    3.8 
                               +    Prom      7053 -      7112    3.8 
    10     5 Tu  1     .       +    CDS       7232 -      9367   1876  ## COG1982 Arginine/lysine/ornithine decarboxylases
                               +    Term      9379 -      9412   -0.4 
                               -    Term      9361 -      9406   12.1 
    11     6 Tu  1     .       -    CDS       9416 -     10672   1584  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     10778 -     10837    6.2 
    12     7 Op  1   6/0.135   -    CDS      10874 -     11956    946  ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
    13     7 Op  2  11/0.000   -    CDS      12018 -     12293    341  ## COG2924 Fe-S cluster protector protein
    14     7 Op  3     .       -    CDS      12321 -     13373   1080  ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31
                               -    Prom     13483 -     13542    2.5 
                               +    Prom     13442 -     13501    3.6 
    15     8 Op  1   4/0.405   +    CDS      13534 -     14253    735  ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase
    16     8 Op  2     .       +    CDS      14253 -     14579    451  ## COG3171 Uncharacterized protein conserved in bacteria
                               +    Term     14722 -     14752    3.0 
    17     9 Tu  1     .       +    CDS      14766 -     15482    945  ## ECO111_3709 hypothetical protein
                               +    Term     15492 -     15538    5.1 
                               +    Prom     15518 -     15577    6.0 
    18    10 Tu  1     .       +    CDS      15658 -     16704   1279  ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
                               +    Term     16712 -     16744    5.4 
                               +    Prom     16733 -     16792    5.1 
    19    11 Tu  1     .       +    CDS      16821 -     17828    849  ## ECED1_3419 hypothetical protein
                               +    Term     17850 -     17901    7.1 
    20    12 Op  1  13/0.000   -    CDS      17893 -     19029   1044  ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
    21    12 Op  2   2/0.811   -    CDS      19022 -     19615   1007  ## PROTEIN SUPPORTED gi|26249375|ref|NP_755415.1| putative deoxyribonucleotide triphosphate pyrophosphatase
    22    12 Op  3   6/0.135   -    CDS      19623 -     19913    286  ## COG1872 Uncharacterized conserved protein
    23    12 Op  4   5/0.243   -    CDS      19910 -     20476    814  ## COG0762 Predicted integral membrane protein
    24    12 Op  5     .       -    CDS      20494 -     21198    658  ## COG0325 Predicted enzyme with a TIM-barrel fold
                               -    Prom     21243 -     21302    3.0 
                               +    Prom     20908 -     20967    3.5 
    25    13 Tu  1     .       +    CDS      21216 -     22196    829  ## COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT
                               +    Term     22415 -     22444    0.5 
                               -    Term     22215 -     22251    1.1 
    26    14 Op  1   8/0.027   -    CDS      22370 -     22786    515  ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
    27    14 Op  2   2/0.811   -    CDS      22786 -     23349    643  ## COG1678 Putative transcriptional regulator
                               -    Prom     23386 -     23445    3.2 
                               -    Term     23367 -     23423    3.4 
    28    15 Op  1   2/0.811   -    CDS      23458 -     24408    356  ## PROTEIN SUPPORTED gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme
    29    15 Op  2   3/0.514   -    CDS      24421 -     25152    628  ## COG1385 Uncharacterized protein conserved in bacteria
    30    15 Op  3   6/0.135   -    CDS      25232 -     25939    453  ## COG2356 Endonuclease I
                               -    Prom     25961 -     26020    4.1 
    31    16 Op  1   4/0.405   -    CDS      26034 -     26585    489  ## COG3091 Uncharacterized protein conserved in bacteria
    32    16 Op  2   4/0.405   -    CDS      26608 -     28002   1748  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     28103 -     28162    8.8 
                               -    Term     28383 -     28415    3.0 
    33    17 Tu  1     .       -    CDS      28438 -     29592   1343  ## COG0192 S-adenosylmethionine synthetase
                               +    Prom     29830 -     29889    6.2 
    34    18 Op  1     .       +    CDS      30010 -     30153     59  ## gi|188495354|ref|ZP_03002624.1| hypothetical protein Ec53638_2979
                               +    Term     30169 -     30200    1.1 
                               +    Prom     30307 -     30366    4.0 
    35    18 Op  2     .       +    CDS      30387 -     32363   2309  ## COG1166 Arginine decarboxylase (spermidine biosynthesis)
                               +    Term     32381 -     32425   11.0 
                               +    Prom     32424 -     32483    7.9 
    36    19 Tu  1     .       +    CDS      32509 -     33240    526  ## ECIAI39_3357 conserved hypothetical protein; putative exported protein
                               +    Term     33308 -     33352    7.4 
                               +    Prom     33297 -     33356    3.0 
    37    20 Tu  1     .       +    CDS      33376 -     34296   1290  ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family
                               +    Term     34409 -     34448    4.3 
                               -    Term     34214 -     34245   -0.5 
    38    21 Tu  1     .       -    CDS      34344 -     35102    792  ## COG0501 Zn-dependent protease with chaperone function
                               -    Prom     35124 -     35183    5.0 
                               +    Prom     35242 -     35301    3.8 
    39    22 Tu  1     .       +    CDS      35380 -     37371   2447  ## COG0021 Transketolase
                               +    Term     37389 -     37428    8.2 
    40    23 Tu  1     .       -    CDS      37417 -     38325   1013  ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs
                               -    Prom     38516 -     38575    7.0 
                               +    Prom     38539 -     38598    6.0 
    41    24 Op  1   3/0.514   +    CDS      38702 -     39145    325  ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
    42    24 Op  2   2/0.811   +    CDS      39173 -     40561   1708  ## COG2213 Phosphotransferase system, mannitol-specific IIBC component
    43    24 Op  3   2/0.811   +    CDS      40576 -     41853   1275  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
    44    24 Op  4   3/0.514   +    CDS      41850 -     42815    846  ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins
    45    24 Op  5   3/0.514   +    CDS      42837 -     43346    343  ## COG3722 Transcriptional regulator
    46    24 Op  6   1/0.919   +    CDS      43343 -     44056    383  ## COG1072 Panthothenate kinase
                               +    Term     44285 -     44322    1.5 
                               +    Prom     44150 -     44209    2.4 
    47    25 Op  1  26/0.000   +    CDS      44341 -     45360    816  ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
    48    25 Op  2   9/0.027   +    CDS      45410 -     46573   1443  ## COG0126 3-phosphoglycerate kinase
                               +    Term     46583 -     46613    3.0 
                               +    Prom     46588 -     46647    6.2 
    49    26 Tu  1   4/0.405   +    CDS      46788 -     47867   1174  ## COG0191 Fructose/tagatose bisphosphate aldolase
                               +    Term     47892 -     47920    2.1 
                               +    Prom     48082 -     48141    3.9 
    50    27 Tu  1     .       +    CDS      48225 -     49085   1039  ## COG0668 Small-conductance mechanosensitive channel
                               +    Term     49094 -     49133    5.0 
                               +    Prom     49137 -     49196    5.7 
    51    28 Op  1   5/0.243   +    CDS      49224 -     49859    609  ## COG1279 Lysine efflux permease
    52    28 Op  2   2/0.811   +    CDS      49952 -     50692    781  ## COG2968 Uncharacterized conserved protein
                               +    Term     50715 -     50748   -0.3 
                               +    Prom     50718 -     50777    6.2 
    53    29 Tu  1     .       +    CDS      50859 -     51755    766  ## COG0583 Transcriptional regulator
    54    30 Op  1     .       -    CDS      51752 -     53230   1086  ## COG0427 Acetyl-CoA hydrolase
    55    30 Op  2     .       -    CDS      53254 -     54039    917  ## COG1024 Enoyl-CoA hydratase/carnithine racemase
    56    30 Op  3   6/0.135   -    CDS      54050 -     55045    861  ## COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family
    57    30 Op  4   3/0.514   -    CDS      55038 -     57182   2299  ## COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit
                               -    Prom     57300 -     57359    4.0 
                               -    Term     57339 -     57372    2.7 
    58    31 Tu  1     .       -    CDS      57386 -     58279    889  ## COG0583 Transcriptional regulator
                               -    Prom     58309 -     58368    1.5 
                               +    Prom     58319 -     58378    3.4 
    59    32 Op  1     .       +    CDS      58421 -     58651    168  ## COG0583 Transcriptional regulator
    60    32 Op  2   8/0.027   +    CDS      58707 -     59366    822  ## COG0120 Ribose 5-phosphate isomerase
                               +    Prom     59517 -     59576    4.4 
    61    33 Tu  1     .       +    CDS      59622 -     60854   1483  ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
                               +    Term     60876 -     60912    7.1 
                               -    Term     61035 -     61066    3.2 
    62    34 Tu  1     .       -    CDS      61243 -     61845    408  ## COG0212 5-formyltetrahydrofolate cyclo-ligase
                               +    Prom     61764 -     61823    2.0 
    63    35 Tu  1     .       +    CDS      61878 -     62141    105  ## ECIAI1_3030 hypothetical protein
    64    36 Tu  1     .       -    CDS      62091 -     62420    340  ## COG3027 Uncharacterized protein conserved in bacteria
                               -    Prom     62479 -     62538    3.1 
                               +    Prom     62500 -     62559    1.5 
    65    37 Op  1   5/0.243   +    CDS      62588 -     63166    663  ## COG3079 Uncharacterized protein conserved in bacteria
    66    37 Op  2   8/0.027   +    CDS      63192 -     64517   1359  ## COG0006 Xaa-Pro aminopeptidase
    67    37 Op  3   8/0.027   +    CDS      64514 -     65692    999  ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
    68    37 Op  4   5/0.243   +    CDS      65715 -     66917   1350  ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
                               +    Term     66961 -     66996    4.1 
    69    38 Op  1  18/0.000   +    CDS      67365 -     68459   1360  ## COG0404 Glycine cleavage system T protein (aminomethyltransferase)
    70    38 Op  2  12/0.000   +    CDS      68483 -     68872    554  ## COG0509 Glycine cleavage system H protein (lipoate-binding)
                               +    Term     68902 -     68946    2.3 
                               +    Prom     68910 -     68969    1.8 
    71    38 Op  3   1/0.919   +    CDS      68991 -     71864   3454  ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain
                               +    Term     71890 -     71915   -0.5 
    72    39 Tu  1     .       +    CDS      72131 -     72874    253  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
    73    40 Tu  1     .       -    CDS      72931 -     74364   1698  ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase
                               -    Prom     74394 -     74453    3.3 
                               +    Prom     74116 -     74175    3.3 
    74    41 Tu  1     .       +    CDS      74409 -     74720    407  ## COG3097 Uncharacterized protein conserved in bacteria
                               +    Prom     74750 -     74809    3.5 
    75    42 Tu  1     .       +    CDS      74884 -     75543    698  ## COG1272 Predicted membrane protein, hemolysin III homolog
                               +    Term     75699 -     75747    3.1 
    76    43 Tu  1     .       -    CDS      75739 -     76719   1062  ## COG0354 Predicted aminomethyltransferase related to GcvT
                               -    Prom     76752 -     76811    3.1 
                               +    Prom     76670 -     76729    3.7 
    77    44 Op  1     .       +    CDS      76962 -     77228    310  ## COG2938 Uncharacterized conserved protein
    78    44 Op  2     .       +    CDS      77209 -     77616    251  ## SSON_3049 hypothetical protein
                               +    Term     77647 -     77697    2.6 
                               -    Term     77607 -     77649    1.2 
    79    45 Tu  1     .       -    CDS      77656 -     78177    786  ## COG0716 Flavodoxins
                               -    Prom     78209 -     78268    3.4 
                               +    Prom     78206 -     78265    4.9 
    80    46 Op  1   8/0.027   +    CDS      78289 -     79185    833  ## COG4974 Site-specific recombinase XerD
    81    46 Op  2   7/0.081   +    CDS      79210 -     79920    752  ## COG1651 Protein-disulfide isomerase
    82    46 Op  3   5/0.243   +    CDS      79926 -     81659   1951  ## COG0608 Single-stranded DNA-specific exonuclease
                               +    Term     81683 -     81717    2.6 
                               +    Prom     81724 -     81783    1.7 
    83    47 Op  1   8/0.027   +    CDS      81967 -     82848    995  ## COG1186 Protein chain release factor B
    84    47 Op  2     .       +    CDS      82858 -     84375   2035  ## COG1190 Lysyl-tRNA synthetase (class II)
                               +    Term     84396 -     84425    0.3 
    85    48 Tu  1     .       -    CDS      84419 -     84967    419  ## COG1443 Isopentenyldiphosphate isomerase
                               -    Prom     84992 -     85051    3.6 
                               -    Term     85040 -     85068   -0.3 
    86    49 Op  1     .       -    CDS      85090 -     85215     81  ## 
    87    49 Op  2     .       -    CDS      85217 -     86665    375  ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18
                               +    Prom     86963 -     87022    6.0 
    88    50 Op  1   3/0.514   +    CDS      87086 -     89020   1044  ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases
    89    50 Op  2     .       +    CDS      89020 -     89508    250  ## COG1142 Fe-S-cluster-containing hydrogenase components 2
                               +    Term     89515 -     89551    6.7 
                               -    Term     89501 -     89538    6.1 
    90    51 Op  1   2/0.811   -    CDS      89544 -     90911   1195  ## COG2252 Permeases
    91    51 Op  2   4/0.405   -    CDS      90947 -     92263   1422  ## COG0402 Cytosine deaminase and related metal-dependent hydrolases
    92    51 Op  3   2/0.811   -    CDS      92281 -     93681    292  ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18
                               -    Term     93809 -     93836    1.5 
    93    52 Op  1  12/0.000   -    CDS      93846 -     96716   2894  ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
    94    52 Op  2   2/0.811   -    CDS      96713 -     97492    857  ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
    95    52 Op  3   1/0.919   -    CDS      97543 -     98871   1315  ## COG0402 Cytosine deaminase and related metal-dependent hydrolases
    96    52 Op  4   3/0.514   -    CDS      98874 -    101972   2690  ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases
                               -    Prom    102075 -    102134   10.7 
    97    53 Tu  1     .       -    CDS     102294 -    102872    213  ## COG2068 Uncharacterized MobA-related protein
                               -    Prom    102974 -    103033    6.3 
    98    54 Op  1     .       +    CDS     103143 -    103745    225  ## ECIAI1_2996 hypothetical protein
    99    54 Op  2     .       +    CDS     103793 -    105418   1338  ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
                               +    Term    105607 -    105644    3.0 
                               -    Term    105590 -    105638    2.7 
   100    55 Op  1     .       -    CDS     105639 -    106571   1234  ## COG0549 Carbamate kinase
   101    55 Op  2   4/0.405   -    CDS     106619 -    108004   1031  ## COG0044 Dihydroorotase and related cyclic amidohydrolases
                               -    Term    108007 -    108039    5.0 
   102    56 Op  1   4/0.405   -    CDS     108057 -    109268   1648  ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
   103    56 Op  2   2/0.811   -    CDS     109326 -    110522   1169  ## COG1171 Threonine dehydratase
                               -    Term    110540 -    110573    5.2 
   104    56 Op  3     .       -    CDS     110580 -    111767   1470  ## COG0078 Ornithine carbamoyltransferase
   105    57 Tu  1     .       +    CDS     112246 -    114024   1018  ## COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
                               +    Term    114032 -    114074   11.1 
   106    58 Op  1  15/0.000   -    CDS     114064 -    114543    333  ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
   107    58 Op  2  12/0.000   -    CDS     114540 -    115418    622  ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
   108    58 Op  3     .       -    CDS     115429 -    117726   1822  ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
                               -    Prom    117797 -    117856    3.5 
                               +    Prom    118056 -    118115    4.1 
   109    59 Tu  1     .       +    CDS     118141 -    118896    375  ## COG0739 Membrane proteins related to metalloendopeptidases
                               +    Term    118997 -    119065   31.3 
                               +   TRNA     118975 -    119048   78.8  # Gly CCC 0 0
   110    60 Op  1     .       +    CDS     119339 -    120817    601  ## COG0582 Integrase
   111    60 Op  2     .       +    CDS     120810 -    121451    227  ## ROD_49471 hypothetical protein
                               +    Term    121566 -    121599    0.2 
                               +    Prom    121651 -    121710    7.4 
   112    61 Tu  1     .       +    CDS     121952 -    122515    402  ## ECO103_3437 hypothetical protein
                               +    Prom    122585 -    122644    5.1 
   113    62 Tu  1     .       +    CDS     122885 -    123112    219  ## gi|256024629|ref|ZP_05438494.1| hypothetical protein E4_14724
                               +    Prom    123439 -    123498    6.6 
   114    63 Op  1     .       +    CDS     123559 -    124353    332  ## EcHS_A3023 hypothetical protein
   115    63 Op  2     .       +    CDS     124399 -    125169    212  ## EcE24377A_3187 hypothetical protein
                               +    Prom    125816 -    125875    7.8 
   116    64 Tu  1     .       +    CDS     125907 -    126248    348  ## COG1886 Flagellar motor switch/type III secretory pathway protein
                               +    Prom    126274 -    126333    6.0 
   117    65 Op  1   7/0.081   +    CDS     126385 -    126903    162  ## COG4790 Type III secretory pathway, component EscR
   118    65 Op  2   8/0.027   +    CDS     126913 -    127173    153  ## COG4794 Type III secretory pathway, component EscS
                               +    Prom    127588 -    127647    5.9 
   119    66 Op  1   2/0.811   +    CDS     127706 -    127942    178  ## COG4791 Type III secretory pathway, component EscT
   120    66 Op  2     .       +    CDS     127951 -    128682    351  ## COG1377 Flagellar biosynthesis pathway, component FlhB
   121    66 Op  3     .       +    CDS     128709 -    129071    226  ## COG1377 Flagellar biosynthesis pathway, component FlhB
                               +    Term    129099 -    129141    7.1 
   122    67 Tu  1     .       -    CDS     129428 -    129928    166  ## COG2771 DNA-binding HTH domain-containing proteins
                               -    Prom    130032 -    130091    5.9 
                               +    Prom    130023 -    130082    9.7 
   123    68 Op  1     .       +    CDS     130185 -    131366    304  ## ECO103_3424 type III secretion protein EprH
   124    68 Op  2     .       +    CDS     131380 -    131619    281  ## ECUMN_3190 type III secretion system needle protein
   125    68 Op  3     .       +    CDS     131639 -    131971    257  ## ECH74115_4132 type III secretion apparatus protein EprJ
   126    68 Op  4     .       +    CDS     131968 -    132702     99  ## COG4669 Type III secretory pathway, lipoprotein EscJ
                               +    Term    132952 -    133005    1.1 
                               +    Prom    132940 -    132999    4.9 
   127    69 Tu  1     .       +    CDS     133240 -    133947    244  ## ECUMN_3186 hypothetical protein
                               -    Term    133681 -    133716    0.4 
   128    70 Tu  1     .       -    CDS     133869 -    134042     93  ## Z4177 hypothetical protein
                               -    Prom    134118 -    134177    6.7 
                               +    Prom    134012 -    134071   10.2 
   129    71 Op  1     .       +    CDS     134169 -    134324    120  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
   130    71 Op  2     .       +    CDS     134358 -    134801     81  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
   131    72 Tu  1     .       -    CDS     134846 -    135082     78  ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
                               -    Prom    135143 -    135202    7.0 
                               +    Prom    135000 -    135059    7.4 
   132    73 Tu  1     .       +    CDS     135150 -    135338     88  ## ECSE_3112 hypothetical protein
                               +    Term    135356 -    135393    3.2 
                               -    Term    135342 -    135381    4.4 
   133    74 Tu  1     .       -    CDS     135405 -    135623    146  ## JW5456 hypothetical protein
                               -    Prom    135679 -    135738    4.7 
   134    75 Tu  1     .       -    CDS     135791 -    137170    218  ## COG0457 FOG: TPR repeat
                               -    Prom    137217 -    137276    5.3 
                               -    Term    137432 -    137480   11.3 
   135    76 Tu  1     .       -    CDS     137505 -    138029    142  ## COG0457 FOG: TPR repeat
                               -    Prom    138235 -    138294    5.7 
                               +    Prom    138646 -    138705    4.2 
   136    77 Tu  1     .       +    CDS     138904 -    139329    139  ## ECUMN_3178 hypothetical protein
   137    78 Op  1     .       -    CDS     139478 -    139960     97  ## JW5455 hypothetical protein
   138    78 Op  2   2/0.811   -    CDS     139953 -    140288    178  ## COG3710 DNA-binding winged-HTH domains
                               -    Prom    140310 -    140369    3.4 
                               -    Term    141022 -    141061    6.1 
   139    79 Tu  1     .       -    CDS     141096 -    141614    172  ## COG2771 DNA-binding HTH domain-containing proteins
                               -    Prom    141720 -    141779    4.7 
                               -    Term    142131 -    142177   13.1 
   140    80 Tu  1     .       -    CDS     142188 -    143417    615  ## COG0814 Amino acid permeases
                               -    Prom    143452 -    143511    4.3 
                               +    Prom    143566 -    143625    6.0 
   141    81 Tu  1     .       +    CDS     143672 -    144853    997  ## COG0183 Acetyl-CoA acetyltransferase
                               +    Prom    144979 -    145038    5.8 
   142    82 Op  1   9/0.027   +    CDS     145248 -    145976    690  ## COG3717 5-keto 4-deoxyuronate isomerase
   143    82 Op  2   9/0.027   +    CDS     146006 -    146767    752  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
                               +    Term    146788 -    146821    4.5 
                               +    Prom    146856 -    146915    6.5 
   144    83 Tu  1     .       +    CDS     147142 -    148500   1390  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term    148507 -    148546   10.2 
   145    84 Tu  1     .       +    CDS     148629 -    149321    692  ## COG1794 Aspartate racemase
                               +    Term    149538 -    149586   -1.0 
   146    85 Tu  1     .       -    CDS     149308 -    150243    752  ## COG0583 Transcriptional regulator
                               -    Prom    150327 -    150386    6.7 
                               +    Prom    150273 -    150332    9.1 
   147    86 Tu  1     .       +    CDS     150365 -    151627   1213  ## COG0019 Diaminopimelate decarboxylase
   148    87 Tu  1     .       -    CDS     151634 -    152665    918  ## COG1609 Transcriptional regulators
                               +    Prom    153155 -    153214    3.2 
   149    88 Op  1   5/0.243   +    CDS     153250 -    155409   1985  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
   150    88 Op  2     .       +    CDS     155402 -    156595   1331  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term    156599 -    156636    8.0 
                               -    Term    156587 -    156624    8.0 
   151    89 Tu  1     .       -    CDS     156627 -    157667   1133  ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
                               -    Prom    157693 -    157752    7.3 
                               -    Term    157733 -    157770    5.1 
   152    90 Tu  1     .       -    CDS     157775 -    157993    264  ## G2583_3488 hypothetical protein
                               -    Prom    158063 -    158122    3.6 
                               -    Term    158082 -    158127    2.7 
   153    91 Op  1   5/0.243   -    CDS     158131 -    158844    794  ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance
   154    91 Op  2     .       -    CDS     158913 -    159602    674  ## COG3066 DNA mismatch repair protein
                               -    Prom    159648 -    159707    4.7 
                               +    Prom    159649 -    159708    3.6 
   155    92 Tu  1     .       +    CDS     159788 -    159934     73  ## ECO103_3390 hypothetical protein
                               +    Prom    159988 -    160047    6.5 
   156    93 Op  1   7/0.081   +    CDS     160287 -    160817    271  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
   157    93 Op  2   5/0.243   +    CDS     160830 -    163076   2099  ## COG3605 Signal transduction protein containing GAF and PtsI domains
   158    94 Op  1  11/0.000   +    CDS     163227 -    164102   1130  ## COG0682 Prolipoprotein diacylglyceryltransferase
   159    94 Op  2   4/0.405   +    CDS     164130 -    164903    920  ## COG0207 Thymidylate synthase
                               +    Term    164922 -    164959    5.6 
                               +    Prom    164918 -    164977    2.1 
   160    95 Op  1  12/0.000   +    CDS     165087 -    165557    253  ## COG2165 Type II secretory pathway, pseudopilin PulG
   161    95 Op  2     .       +    CDS     165548 -    166111    648  ## COG4795 Type II secretory pathway, component PulJ
   162    95 Op  3     .       +    CDS     166108 -    166515    254  ## B21_02633 hypothetical protein
   163    95 Op  4   5/0.243   +    CDS     166557 -    166823     83  ## COG4967 Tfp pilus assembly protein PilV
   164    95 Op  5   5/0.243   +    CDS     166836 -    170204   3235  ## COG1330 Exonuclease V gamma subunit
                               +    Prom    170260 -    170319    4.1 
   165    96 Op  1   5/0.243   +    CDS     170380 -    173268   2697  ## COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like
   166    96 Op  2  13/0.000   +    CDS     173261 -    176803   2893  ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
   167    96 Op  3     .       +    CDS     176803 -    178629   1313  ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
                               +    Term    178640 -    178690    9.5 
   168    97 Tu  1     .       -    CDS     178691 -    180022   1288  ## COG0548 Acetylglutamate kinase
                               -    Prom    180052 -    180111    5.6 
                               +    Prom    180045 -    180104    8.0 
   169    98 Tu  1     .       +    CDS     180254 -    181507   1214  ## COG0860 N-acetylmuramoyl-L-alanine amidase
                               -   TRNA     181581 -    181656   78.8  # Met CAT 0 0
Predicted protein(s)
>gi|223713536|gb|ACDM01000062.1| GENE     1         2  -       464    288    154 aa, chain - ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     154       1     154     537     230   96.0  8e-61
MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEEEREIEH
LRAQIEKLRRMLFGTRSEKLQREVEQAESQLKQREQDSDRYSGREDDPQVPRQLRQSRHR
RPLPAHLPREIHRLEPEESCCQECGSELDYLGEV
>gi|223713536|gb|ACDM01000062.1| GENE     2       495  -       845    245    116 aa, chain - ## HITS:1  COG:ECs1338 KEGG:ns NR:ns ## COG: ECs1338 COG3436 # Protein_GI_number: 15830592 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     116       1     116     116     221   93.0  3e-58
MISRPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLDENPFSGHLFIFRGRRCDTVKILWAD
SDGLCQFTKHLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDWRQPKTSRLNSLTML
>gi|223713536|gb|ACDM01000062.1| GENE     3       929  -      1294    209    121 aa, chain - ## HITS:1  COG:STM2813 KEGG:ns NR:ns ## COG: STM2813 COG1846 # Protein_GI_number: 16766124 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1     116      47     162     176      90   41.0  6e-19
MLGGYGINYSTYMVLTVLSTADNHCLSPSEISRELQFTRTNITRITDFLEKAGYTERTDS
KEDRRAKKISLTSEGLSFIQGITLTQNQYLKEIWSPLTYDERELFKDINQKLLTHFADVR
S
>gi|223713536|gb|ACDM01000062.1| GENE     4      2230  -      2547    221    105 aa, chain + ## HITS:1  COG:YPCD1.83c KEGG:ns NR:ns ## COG: YPCD1.83c COG2963 # Protein_GI_number: 16082769 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1     105       3     107     107     102   64.0  1e-22
MSKTRRTKRTFSPEFRLEAIEQVVKYQRDVREVALALELNPDHLRKWIRLYKLELQGIEP
AGNAIPLNSEKFSSLKAQIKRLEMEKEILKQAAVLMSEIPGKLSR
>gi|223713536|gb|ACDM01000062.1| GENE     5      2952  -      3422    197    156 aa, chain - ## HITS:1  COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2     154     273     426     512     215   64.0  3e-56
MLTDIFNSNYQCYGYRRLHAMLRHEGDRLSEKVVRRLMVEEQLVVSRNRHRRYSSYCGEI
GPSPDNLIARDFKAEQPNQKWLTDITEFQLPAGKVWLSPVVDCFDRKVVSWSLSTRPDAE
LVNTMLDNAVETLNAGERPVIHSDRGGHYRWPGWKE
>gi|223713536|gb|ACDM01000062.1| GENE     6      3531  -      3962    159    143 aa, chain - ## HITS:1  COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2     143      94     234     512      90   37.0  1e-18
MLARWVNERSPDRRRVFTSKTNPVASFEPEVKRQAVMVLCTRQGSASEIARRIGVSRAVL
YKWKDEIIGNSAYQTMRKHNAPSLEAERDALREEVARLNQEIRRRQMELDILKKAEEIIK
KDPGISISHLNNREKTKITDALR
>gi|223713536|gb|ACDM01000062.1| GENE     7      4485  -      5747    365    420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 49     399      60     400     406 145  28 2e-33
MALTDAKIRAAKHTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
IKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS
ELRYSRWSEIDIDNAMWTIPAEREPLPGVKYSHRGSKMRIPHLVPLSKQAVAILTELQTW
AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD
AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLGANREQCISSFEYAKINNPLK
>gi|223713536|gb|ACDM01000062.1| GENE     8      5811  -      6032     87     73 aa, chain - ## HITS:1  COG:no KEGG:EC55989_4689 NR:ns ## KEGG: EC55989_4689 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      73      10      82      82     132   97.0  4e-30
MRPVARIAQSVEQGIENPRVLGSIPSPGTKFISTDLHGGPFFVSERHNLSVLPPNQFYRT
QPDSPHINPIVWV
>gi|223713536|gb|ACDM01000062.1| GENE     9      6126  -      6833    575    235 aa, chain - ## HITS:1  COG:ECs3842 KEGG:ns NR:ns ## COG: ECs3842 COG1811 # Protein_GI_number: 15833096 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Escherichia coli O157:H7 # 1     235       1     235     235     326   96.0  3e-89
MVIGPFINASAVLLGGVFGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMV
LATLLGALIGEICLLEKGVNTVVVKAHNLFHHSRKKPAHESFIQNFVAIIVLFCASGTGI
FGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILP
LTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA
>gi|223713536|gb|ACDM01000062.1| GENE    10      7232  -      9367   1876    711 aa, chain + ## HITS:1  COG:ECs3841 KEGG:ns NR:ns ## COG: ECs3841 COG1982 # Protein_GI_number: 15833095 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli O157:H7 # 1     711      21     731     731    1489   99.0  0
MKSMNIAASSELVSRLSTHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPV
FLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFAC
PGHQHGAFFKKHPAGRHFYDFFGENIFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFH
ADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLQASRNP
FGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLAIIQLGTYDGTVYNARQVIDTVG
HLCDYILFDSAWVGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHK
KDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELG
IESRKAILTRCKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGANWHGFEGYAADQ
YFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAES
HEKLAQLVAMLAQFEQHIEDDSPLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDV
KDLQKAMFRQQSFPSVVMNPQDAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVV
PGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK
>gi|223713536|gb|ACDM01000062.1| GENE    11      9416  -     10672   1584    418 aa, chain - ## HITS:1  COG:ECs3840 KEGG:ns NR:ns ## COG: ECs3840 COG0477 # Protein_GI_number: 15833094 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     418      17     434     434     724   99.0  0
MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPALLGI
VADKWLSAKWVYAICHTIGAITLFMAAEVTTPEAMFLVILINSFAYMPTLGLINTISYYR
LQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLP
HIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDK
DPMFASSFIVQHASIIMSISQISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAY
GDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCIL
GGIVSGKVVEMYTQNGITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH
>gi|223713536|gb|ACDM01000062.1| GENE    12     10874  -     11956    946    360 aa, chain - ## HITS:1  COG:mltC KEGG:ns NR:ns ## COG: mltC COG0741 # Protein_GI_number: 16130864 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1     360       1     360     360     690  100.0  0
MMKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVI
AGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLY
SDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTIN
MVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQH
TAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAY
NGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
>gi|223713536|gb|ACDM01000062.1| GENE    13     12018  -     12293    341     91 aa, chain - ## HITS:1  COG:STM3111 KEGG:ns NR:ns ## COG: STM3111 COG2924 # Protein_GI_number: 16766412 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: Fe-S cluster protector protein # Organism: Salmonella typhimurium LT2 # 1      91       1      91      91     159   93.0  1e-39
MSRMIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQHKQTMLINEKKLNMMNA
EHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK
>gi|223713536|gb|ACDM01000062.1| GENE    14     12321  -     13373   1080    350 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 6     343      11     366     378 420  58 1e-116
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP
TVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRS
TAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERF
NQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSLYPGKKPKQTLPERTGYFLLLQH
EDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQRQIAADNLTQLTAFRHTFSHFHLD
IVPMWLPVSSFIGCMDEDNALWYNLAQPPSVGLAAPVERLLQQLRTGAPV
>gi|223713536|gb|ACDM01000062.1| GENE    15     13534  -     14253    735    239 aa, chain + ## HITS:1  COG:yggH KEGG:ns NR:ns ## COG: yggH COG0220 # Protein_GI_number: 16130861 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Escherichia coli K12 # 1     239       1     239     239     489   99.0  1e-138
MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF
GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLSSAHEEGLSNLRVMCH
DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGIFHMATD
WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
>gi|223713536|gb|ACDM01000062.1| GENE    16     14253  -     14579    451    108 aa, chain + ## HITS:1  COG:yggL KEGG:ns NR:ns ## COG: yggL COG3171 # Protein_GI_number: 16130860 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     108      11     118     118     200   99.0  7e-52
MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGS
GYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLEEVRTSELFDVWWD
>gi|223713536|gb|ACDM01000062.1| GENE    17     14766  -     15482    945    238 aa, chain + ## HITS:1  COG:no KEGG:ECO111_3709 NR:ns ## KEGG: ECO111_3709 # Name: yggN # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     238       2     239     239     429  100.0  1e-119
MRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGENGNLVITPDGNVMYNGK
QYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIALDKIIVQEMGESSKMRSRLT
KLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLVNQAMGGILQDSINEMGAKAVL
KSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGKDVCSRVVTLEDSRKALVGNLK
>gi|223713536|gb|ACDM01000062.1| GENE    18     15658  -     16704   1279    348 aa, chain + ## HITS:1  COG:ECs3833 KEGG:ns NR:ns ## COG: ECs3833 COG0252 # Protein_GI_number: 15833087 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 1     348       1     348     348     610   98.0  1e-174
MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNA
VPQLKDIANVKGEQVVNIGSQDMNDDVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYF
LDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGR
GVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPVRKHTSDTPFDVSKLNELPKVGIVY
NYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGTAVVRSSRVPTGAT
TQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY
>gi|223713536|gb|ACDM01000062.1| GENE    19     16821  -     17828    849    335 aa, chain + ## HITS:1  COG:no KEGG:ECED1_3419 NR:ns ## KEGG: ECED1_3419 # Name: yggM # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1     335       1     335     335     603   99.0  1e-171
MKKQWIVGTALFMLMTGNVRADGEPPTENILKDQFKKQYHGILKLDVITLKNLDAKGNQA
TWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAMLTSKGTPASGWSVNFYSF
QAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALNNQNNSIPALKKDVKALDKQM
VAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDDFNKQNDSEAFAVKYDKEVYQPAIAA
CHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWITLEKGQYPLTMKVSEI
NSKKVTILMKIDDINQANERWKKDTEQLRRNGVIK
>gi|223713536|gb|ACDM01000062.1| GENE    20     17893  -     19029   1044    378 aa, chain - ## HITS:1  COG:yggW KEGG:ns NR:ns ## COG: yggW COG0635 # Protein_GI_number: 16130856 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli K12 # 1     378       1     378     378     783   98.0  0
MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVK
TIFIGGGTPSLLSGPAMQTLLNGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNR
ISIGVQSFSEEKLKRLGRIHGPQEAKRAANLASGLGLRSFNLDLMHGLPDQSLEEALGDL
RQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA
YAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRYLESQR
DVEAADKPFEFFMNRFRLLEAAPRVEFSQYTGLSEEVIRPQLDEAIAQGYLTECADYWQI
TEHGKLFLNSLLELFLAE
>gi|223713536|gb|ACDM01000062.1| GENE    21     19022  -     19615   1007    197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|26249375|ref|NP_755415.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia coli CFT073] # 1     197       1     197     197 392  100 1e-108
MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKV
TGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHC
VLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAI
SHRGQALKLLLDALRNG
>gi|223713536|gb|ACDM01000062.1| GENE    22     19623  -     19913    286     96 aa, chain - ## HITS:1  COG:ECs3829 KEGG:ns NR:ns ## COG: ECs3829 COG1872 # Protein_GI_number: 15833083 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      96       5     100     100     172   97.0  2e-43
MSAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKLFR
VAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN
>gi|223713536|gb|ACDM01000062.1| GENE    23     19910  -     20476    814    188 aa, chain - ## HITS:1  COG:ECs3828 KEGG:ns NR:ns ## COG: ECs3828 COG0762 # Protein_GI_number: 15833082 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli O157:H7 # 1     188       1     188     188     272  100.0  2e-73
MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGP
IDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVS
QGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVAEVLQATGNML
LPGLWMAL
>gi|223713536|gb|ACDM01000062.1| GENE    24     20494  -     21198    658    234 aa, chain - ## HITS:1  COG:ECs3826 KEGG:ns NR:ns ## COG: ECs3826 COG0325 # Protein_GI_number: 15833081 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Escherichia coli O157:H7 # 1     234       1     234     234     456  100.0  1e-128
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ
EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL
PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA
RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
>gi|223713536|gb|ACDM01000062.1| GENE    25     21216  -     22196    829    326 aa, chain + ## HITS:1  COG:yggR KEGG:ns NR:ns ## COG: yggR COG2805 # Protein_GI_number: 16130851 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, pilus retraction ATPase PilT # Organism: Escherichia coli K12 # 1     326      16     341     341     611   98.0  1e-175
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAIL
LENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSEN
GLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYTSQRCLIQQREIGLHCM
TFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPH
VIQTGQQVGMITFQQSYQQRVKEGRL
>gi|223713536|gb|ACDM01000062.1| GENE    26     22370  -     22786    515    138 aa, chain - ## HITS:1  COG:yqgF KEGG:ns NR:ns ## COG: yqgF COG0816 # Protein_GI_number: 16130850 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Escherichia coli K12 # 1     138       1     138     138     276  100.0  7e-75
MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVG
LPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK
VDSASAVIILESYFEQGY
>gi|223713536|gb|ACDM01000062.1| GENE    27     22786  -     23349    643    187 aa, chain - ## HITS:1  COG:ECs3824 KEGG:ns NR:ns ## COG: ECs3824 COG1678 # Protein_GI_number: 15833078 # Func_class: K Transcription # Function: Putative transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     187      25     211     211     374  100.0  1e-104
MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPE
PRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQ
PSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTM
PGVAGHA
>gi|223713536|gb|ACDM01000062.1| GENE    28     23458  -     24408    356    316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme [Shewanella piezotolerans WP3] # 7     310       6     319     345 141  33 2e-32
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMADLYLINGEARARTRTLSVE
QNYDKWYEFTGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEDKGTLIVNKPQSLR
DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL
GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG
RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS
ITGMLMDAIEARLQQQ
>gi|223713536|gb|ACDM01000062.1| GENE    29     24421  -     25152    628    243 aa, chain - ## HITS:1  COG:ECs3822 KEGG:ns NR:ns ## COG: ECs3822 COG1385 # Protein_GI_number: 15833076 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     243      10     252     252     486  100.0  1e-137
MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKK
SVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD
SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN
TLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFG
DLG
>gi|223713536|gb|ACDM01000062.1| GENE    30     25232  -     25939    453    235 aa, chain - ## HITS:1  COG:ECs3821 KEGG:ns NR:ns ## COG: ECs3821 COG2356 # Protein_GI_number: 15833075 # Func_class: L Replication, recombination and repair # Function: Endonuclease I # Organism: Escherichia coli O157:H7 # 1     235       1     235     235     446   99.0  1e-125
MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPGTFYCGCKINWQGKKGV
VDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYRKMESDMH
NLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEKVAEPPARARGAIARTYFYMR
DQYNLTLSRQQTQLFNAWDKMYPVTDWECERDERIAKVQGNHNPYVQRACQARKS
>gi|223713536|gb|ACDM01000062.1| GENE    31     26034  -     26585    489    183 aa, chain - ## HITS:1  COG:sprT KEGG:ns NR:ns ## COG: sprT COG3091 # Protein_GI_number: 16130845 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 19     183       1     165     165     317   99.0  6e-87
MEEATSCSHLFFALSSAAMKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQ
RGTSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
MESVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGEQL
VAK
>gi|223713536|gb|ACDM01000062.1| GENE    32     26608  -     28002   1748    464 aa, chain - ## HITS:1  COG:galP KEGG:ns NR:ns ## COG: galP COG0477 # Protein_GI_number: 16130844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     464       1     464     464     852  100.0  0
MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSS
MMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVG
VASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIP
AILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWA
LFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTN
VLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIV
GFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWV
YAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD
>gi|223713536|gb|ACDM01000062.1| GENE    33     28438  -     29592   1343    384 aa, chain - ## HITS:1  COG:ECs3818 KEGG:ns NR:ns ## COG: ECs3818 COG0192 # Protein_GI_number: 15833072 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Escherichia coli O157:H7 # 1     384       1     384     384     781  100.0  0
MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS
AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ
GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG
IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC
GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS
YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH
FGREHFPWEKTDKAQLLRDAAGLK
>gi|223713536|gb|ACDM01000062.1| GENE    34     30010  -     30153     59     47 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|188495354|ref|ZP_03002624.1| ## NR: gi|188495354|ref|ZP_03002624.1| hypothetical protein Ec53638_2979 [Escherichia coli 53638] # 1      47       1      47      47      79  100.0  6e-14
MNRCLLLNLSHRSGEDSFPALCISALHTCRCYTHLGASQDSRAGYSY
>gi|223713536|gb|ACDM01000062.1| GENE    35     30387  -     32363   2309    658 aa, chain + ## HITS:1  COG:ECs3814 KEGG:ns NR:ns ## COG: ECs3814 COG1166 # Protein_GI_number: 15833068 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Escherichia coli O157:H7 # 1     658       1     658     658    1363  100.0  0
MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVC
PDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY
FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI
RLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEK
SKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKL
GVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITE
SGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREW
LHDSQMDLHDIHIGYSSGTFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQER
MADKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDG
DGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELS
DEGDTVADMLQYVQLDPKTLLTQFRDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE
>gi|223713536|gb|ACDM01000062.1| GENE    36     32509  -     33240    526    243 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_3357 NR:ns ## KEGG: ECIAI39_3357 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1     243       1     243     243     464  100.0  1e-130
MKKWKVRSALIALVVLLAGCSSNAQYNSSTSGNVGTAWGGDVHSSVQGVSAERAWRDPAE
MIVISYSTTVPSGYDRVYSIRINELEYAIRDGNFNSLPITRVYDSSNNEPRYIVHARIGM
NYQLYIRNYSRNTNYEIVATVDGLDVLNGKQGSLNNNGYIVNAGDSLAIKGFRKDKHTEA
AFQFANVADSYAANSAQGDVRNTGVIGFAAFELQGTAQNALPPCSGQAFPADNNGYAPPP
CRK
>gi|223713536|gb|ACDM01000062.1| GENE    37     33376  -     34296   1290    306 aa, chain + ## HITS:1  COG:ECs3812 KEGG:ns NR:ns ## COG: ECs3812 COG0010 # Protein_GI_number: 15833066 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Escherichia coli O157:H7 # 1     306       1     306     306     613   99.0  1e-175
MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDMATSGRAGGRHGPAAIR
QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRML
SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPKEGLIDPNH
SVQIGIRTEFDKDNGFTVLDACQVNDRGVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAP
GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ
AAKKGE
>gi|223713536|gb|ACDM01000062.1| GENE    38     34344  -     35102    792    252 aa, chain - ## HITS:1  COG:ECs3811 KEGG:ns NR:ns ## COG: ECs3811 COG0501 # Protein_GI_number: 15833065 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli O157:H7 # 1     252      43     294     294     461   98.0  1e-130
MKIRALLVAMSVATVLSGCQNMDANGLLSSGAEAFQAYSLSDAQVKTLSDQACQEMDSKA
TIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMT
DNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGDLGEKLV
NSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPASAERAQ
HIRDRMSADGVK
>gi|223713536|gb|ACDM01000062.1| GENE    39     35380  -     37371   2447    663 aa, chain + ## HITS:1  COG:ECs3810 KEGG:ns NR:ns ## COG: ECs3810 COG0021 # Protein_GI_number: 15833064 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Escherichia coli O157:H7 # 1     663       1     663     663    1331   99.0  0
MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRF
VLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGI
ANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIA
FYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSL
LMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAG
QAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKA
SQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANG
ISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA
SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGG
YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESV
LPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAK
ELL
>gi|223713536|gb|ACDM01000062.1| GENE    40     37417  -     38325   1013    302 aa, chain - ## HITS:1  COG:YPO1342 KEGG:ns NR:ns ## COG: YPO1342 COG0330 # Protein_GI_number: 16121622 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Yersinia pestis # 18     302      18     303     308     288   52.0  6e-78
MKAPVSLTSFRPQKSLAIAIGVLAVVVLPFLSYYTVNEGERGILLRYGKIVKVAEPGLGF
KIPFMESVEKISTRNQAVVYQGLQAYSRDQQPAQMTVSVSFHIKPSEAGAVYTTYNTIEA
LKDRLIVRQLPTQLENVFGQYTAISAVQDRTKLVQDLQNAMRKAVVGPVVIDGVQIENID
FSDAYEKSIEDRMKAEVAIATRKQNLETEKIQAQIAVTQAQAEADSKLAAAKAEAETIRV
RGAAEAETIRLKSAAEAEAIRLRGEALRDNPGLVALTTAERWDGKLPDTMIPGSTVPFIS
TK
>gi|223713536|gb|ACDM01000062.1| GENE    41     38702  -     39145    325    147 aa, chain + ## HITS:1  COG:ECs3809 KEGG:ns NR:ns ## COG: ECs3809 COG1762 # Protein_GI_number: 15833063 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1     147       1     147     147     246   97.0  1e-65
MRLSDYFPESSISVIHSAKDWQEAIDFSMASLLDKNYISENYIQAIKDSTINNGPYYILA
PGVAMPHARPECGALKTGMSLTLLKQGVYFPGNDEPIKLLIGLSAADADSHIGAIQALSE
LLCEEEILEQLLTASSEKQLADIISCG
>gi|223713536|gb|ACDM01000062.1| GENE    42     39173  -     40561   1708    462 aa, chain + ## HITS:1  COG:ECs3808 KEGG:ns NR:ns ## COG: ECs3808 COG2213 # Protein_GI_number: 15833062 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Escherichia coli O157:H7 # 1     462       1     462     462     853   99.0  0
MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYL
LPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALE
KRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSV
INEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMS
KRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGS
IFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMK
QEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVV
THASLEGRVKRVTDKSLILINNYIGDPKLDTLFNQLTAEHKH
>gi|223713536|gb|ACDM01000062.1| GENE    43     40576  -     41853   1275    425 aa, chain + ## HITS:1  COG:ECs3807 KEGG:ns NR:ns ## COG: ECs3807 COG1063 # Protein_GI_number: 15833061 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1     425       1     425     425     858   98.0  0
MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLE
NHPVITGHECAGVIVEVGKNLTDKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMI
IPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIAL
LACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTK
GMSDPVQKLRALTGDVGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFN
FYNVHYNSTHVVGTSGGSTDDMKEAITLSATGQLQPSFMVTHIGGLDAVPETVLNLPDIP
GGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDI
GEAAQ
>gi|223713536|gb|ACDM01000062.1| GENE    44     41850  -     42815    846    321 aa, chain + ## HITS:1  COG:yggF KEGG:ns NR:ns ## COG: yggF COG1494 # Protein_GI_number: 16130831 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Escherichia coli K12 # 1     321       1     321     321     622   98.0  1e-178
MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALNDVAFRGRVVIGEGEID
HAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAVMAFAPRGSLLHAPDMYMK
KLVVNRLAAGAIDLSLPLADNLRNVARALGKPLDKLRMVTLDKPRLSAAIEEATQLGVKV
FALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISACAVKALGGDMQAELIDFCQAKGD
YTENRQIAEQERKRCKAMGVDVNRVYSVDELVRGNDILFSATGVTGGELVNGIQQTANGV
RTQTLLIGGADQTCNIIDSLH
>gi|223713536|gb|ACDM01000062.1| GENE    45     42837  -     43346    343    169 aa, chain + ## HITS:1  COG:yggD KEGG:ns NR:ns ## COG: yggD COG3722 # Protein_GI_number: 16130830 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     169       1     169     169     292   97.0  2e-79
MATLTEDDVLEQLEAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN
SITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP
>gi|223713536|gb|ACDM01000062.1| GENE    46     43343  -     44056    383    237 aa, chain + ## HITS:1  COG:yggC KEGG:ns NR:ns ## COG: yggC COG1072 # Protein_GI_number: 16130829 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Escherichia coli K12 # 1     237       1     237     237     489  100.0  1e-138
MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLT
TFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVE
GDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQI
LRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS
>gi|223713536|gb|ACDM01000062.1| GENE    47     44341  -     45360    816    339 aa, chain + ## HITS:1  COG:ECs3798 KEGG:ns NR:ns ## COG: ECs3798 COG0057 # Protein_GI_number: 15833052 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     339       1     339     339     679  100.0  0
MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWE
VRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV
LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTT
IHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTI
NVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGT
QTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATVAFR
>gi|223713536|gb|ACDM01000062.1| GENE    48     45410  -     46573   1443    387 aa, chain + ## HITS:1  COG:pgk KEGG:ns NR:ns ## COG: pgk COG0126 # Protein_GI_number: 16130827 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Escherichia coli K12 # 1     387       1     387     387     717  100.0  0
MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHL
GRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVAEGELVVLENVRFNKGEKK
DDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKE
PARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVD
EAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKN
AKTILWNGPVGVFEFPNFRKGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADKISYIS
TGGGAFLEFVEGKVLPAVAMLEERAKK
>gi|223713536|gb|ACDM01000062.1| GENE    49     46788  -     47867   1174    359 aa, chain + ## HITS:1  COG:Zfba KEGG:ns NR:ns ## COG: Zfba COG0191 # Protein_GI_number: 15803459 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 EDL933 # 1     359      26     384     384     742  100.0  0
MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ
FSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWI
DGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTG
GEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPT
ILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGV
LNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL
>gi|223713536|gb|ACDM01000062.1| GENE    50     48225  -     49085   1039    286 aa, chain + ## HITS:1  COG:ECs3795 KEGG:ns NR:ns ## COG: ECs3795 COG0668 # Protein_GI_number: 15833049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1     286       1     286     286     498  100.0  1e-141
MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK
IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAA
GVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSR
EPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVW
SNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKEDKAA
>gi|223713536|gb|ACDM01000062.1| GENE    51     49224  -     49859    609    211 aa, chain + ## HITS:1  COG:ECs3794 KEGG:ns NR:ns ## COG: ECs3794 COG1279 # Protein_GI_number: 15833048 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Escherichia coli O157:H7 # 1     211       1     211     211     365   99.0  1e-101
MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSA
LLMQSPWLLALVTWGGVAFLLWYGFGAFKTAMSSNIELASAEVMKQGRWKIIATMLAVTW
LNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRTAKSQ
RIINLVVGCVMWFIALQLARDGIAHAQALFS
>gi|223713536|gb|ACDM01000062.1| GENE    52     49952  -     50692    781    246 aa, chain + ## HITS:1  COG:ECs3793 KEGG:ns NR:ns ## COG: ECs3793 COG2968 # Protein_GI_number: 15833047 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     246       1     246     246     410  100.0  1e-114
MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDIATLAIEVNVAAKDAAT
AKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDGKSILKGYRAVRTVEVTLR
QLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKAAIDNAIHQAQELANGFHRKL
GPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQAAIQFDDQVDVVFQLEPVDQQPA
KTPAAQ
>gi|223713536|gb|ACDM01000062.1| GENE    53     50859  -     51755    766    298 aa, chain + ## HITS:1  COG:ygfI KEGG:ns NR:ns ## COG: ygfI COG0583 # Protein_GI_number: 16130822 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     298       6     303     303     596  100.0  1e-170
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISL
NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG
VTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFLVSRRYE
ERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRDGTSH
>gi|223713536|gb|ACDM01000062.1| GENE    54     51752  -     53230   1086    492 aa, chain - ## HITS:1  COG:ygfH KEGG:ns NR:ns ## COG: ygfH COG0427 # Protein_GI_number: 16130821 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Escherichia coli K12 # 1     492       1     492     492     991  100.0  0
METQWTRMTANEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARRANEQHEAKKPYQIRLL
TGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSFVDLHLSEVAQMVNYGFFG
DIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIELNHYHDPRVAELADIVIPGA
PPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPDAGNMLDKQNPMCQQIADNVVTF
LLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENPVIPPFMMYSEVLQESVVHLLETGK
ISGASASSLTISADSLRKIYDNMDYFASRIVLRPQEISNNPEIIRRLGVIALNVGLEFDI
YGHANSTHVAGVDLMNGIGGSGDFERNAYLSIFMAPSIAKEGKISTVVPMCSHVDHSEHS
VKVIITEQGIADLRGLSPLQRARTIIDNCAHPMYRDYLHRYLENAPGGHIHHDLSHVFDL
HRNLIATGSMLG
>gi|223713536|gb|ACDM01000062.1| GENE    55     53254  -     54039    917    261 aa, chain - ## HITS:1  COG:ECs3789 KEGG:ns NR:ns ## COG: ECs3789 COG1024 # Protein_GI_number: 15833043 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli O157:H7 # 1     261      15     275     275     525  100.0  1e-149
MSYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSK
VFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDL
IIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNH
VVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS
EDYQEGMNAFLEKRKPNFVGH
>gi|223713536|gb|ACDM01000062.1| GENE    56     54050  -     55045    861    331 aa, chain - ## HITS:1  COG:argK KEGG:ns NR:ns ## COG: argK COG1703 # Protein_GI_number: 16130819 # Func_class: E Amino acid transport and metabolism # Function: Putative periplasmic protein kinase ArgK and related GTPases of G3E family # Organism: Escherichia coli K12 # 1     331       1     331     331     658  100.0  0
MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVT
GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR
PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGG
DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA
LEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYY
RQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD
>gi|223713536|gb|ACDM01000062.1| GENE    57     55038  -     57182   2299    714 aa, chain - ## HITS:1  COG:sbm_1 KEGG:ns NR:ns ## COG: sbm_1 COG1884 # Protein_GI_number: 16130818 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, N-terminal domain/subunit # Organism: Escherichia coli K12 # 1     585       1     585     585    1138  100.0  0
MSNVQEWQQLANKELSRREKTVDSLVHQTAEGIAIKPLYTEADLDNLEVTGTLPGLPPYV
RGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDNPR
VAGDVGKAGVAIDTVEDMKVLFDQIPLDKMSVSMTMNGAVLPVLAFYIVAAEEQGVTPDK
LTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCSGNMPRFNTISISGYHMGEAGAN
CVQQVAFTLADGIEYIKAAISAGLKIDDFAPRLSFFFGIGMDLFMNVAMLRAARYLWSEA
VSGFGAQDPKSLALRTHCQTSGWSLTEQDPYNNVIRTTIEALAATLGGTQSLHTNAFDEA
LGLPTDFSARIARNTQIIIQEESELCRTVDPLAGSYYIESLTDQIVKQARAIIQQIDEAG
GMAKAIEAGLPKRMIEEASAREQSLIDQGKRVIVGVNKYKLDHEDETDVLEIDNVMVRNE
QIASLERIRATRDDAAVTAALNALTHAAQHNENLLAAAVNAARVRATLGEISDALEVAFD
RYLVPSQCVTGVIAQSYHQSEKSASEFDAIVAQTEQFLADNGRRPRILIAKMGQDGHDRG
AKVIASAYSDLGFDVDLSPMFSTPEEIARLAVENDVHVVGASSLAAGHKTLIPELVEALK
KWGREDICVVAGGVIPPQDYAFLQERGVAAIYGPGTPMLDSVRDVLNLISQHHD
>gi|223713536|gb|ACDM01000062.1| GENE    58     57386  -     58279    889    297 aa, chain - ## HITS:1  COG:ECs3786 KEGG:ns NR:ns ## COG: ECs3786 COG0583 # Protein_GI_number: 15833040 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     297       1     297     297     577  100.0  1e-165
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPT
EQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIR
LNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNG
VTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMI
PHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
>gi|223713536|gb|ACDM01000062.1| GENE    59     58421  -     58651    168     76 aa, chain + ## HITS:1  COG:yqfE KEGG:ns NR:ns ## COG: yqfE COG0583 # Protein_GI_number: 16130816 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1      76       1      76      76     142  100.0  1e-34
MHFAQRVRALVVLNGVALLPQFACKQGLANGELVRLFAPWSGIPRPLYALFAGRKGMPAI
ARYFMDELTTRLANGV
>gi|223713536|gb|ACDM01000062.1| GENE    60     58707  -     59366    822    219 aa, chain + ## HITS:1  COG:ECs3785 KEGG:ns NR:ns ## COG: ECs3785 COG0120 # Protein_GI_number: 15833039 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1     219       1     219     219     397  100.0  1e-111
MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKL
KSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADAS
KQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGMEILDPI
AMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK
>gi|223713536|gb|ACDM01000062.1| GENE    61     59622  -     60854   1483    410 aa, chain + ## HITS:1  COG:ECs3784 KEGG:ns NR:ns ## COG: ECs3784 COG0111 # Protein_GI_number: 15833038 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli O157:H7 # 1     410       1     410     410     802  100.0  0
MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLR
SRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEL
LLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY
DIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR
GTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEA
QENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAE
QGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY
>gi|223713536|gb|ACDM01000062.1| GENE    62     61243  -     61845    408    200 aa, chain - ## HITS:1  COG:ECs3782 KEGG:ns NR:ns ## COG: ECs3782 COG0212 # Protein_GI_number: 15833036 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Escherichia coli O157:H7 # 19     200       1     182     182     356  100.0  1e-98
MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLS
FDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR
DVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEKLP
VEEWDIPLPAVVTPSKVWEW
>gi|223713536|gb|ACDM01000062.1| GENE    63     61878  -     62141    105     87 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_3030 NR:ns ## KEGG: ECIAI1_3030 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      87      22     108     108     178  100.0  5e-44
MPPQAVTLEPLVQGECVVAVLRLLGRTEHAHQPRSATFLWYEISAQGTGPLANISEKFCL
HGYSTTVNRKVSFKVLVSFFGDATLFK
>gi|223713536|gb|ACDM01000062.1| GENE    64     62091  -     62420    340    109 aa, chain - ## HITS:1  COG:ECs3781 KEGG:ns NR:ns ## COG: ECs3781 COG3027 # Protein_GI_number: 15833035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     109       1     109     109     163  100.0  6e-41
MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERTRVTNTEQLVFIAALN
ISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITEKTNQNFE
>gi|223713536|gb|ACDM01000062.1| GENE    65     62588  -     63166    663    192 aa, chain + ## HITS:1  COG:ECs3780 KEGG:ns NR:ns ## COG: ECs3780 COG3079 # Protein_GI_number: 15833034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     192       3     194     194     359  100.0  1e-99
MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGMAF
GHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQ
PKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTHPQ
PTAPEVQKPTLH
>gi|223713536|gb|ACDM01000062.1| GENE    66     63192  -     64517   1359    441 aa, chain + ## HITS:1  COG:pepP KEGG:ns NR:ns ## COG: pepP COG0006 # Protein_GI_number: 16130810 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1     441       1     441     441     902  100.0  0
MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPE
AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ
LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPE
EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENG
CILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLET
SLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLD
VHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENL
TASVVKKPEEIEALMVAARKQ
>gi|223713536|gb|ACDM01000062.1| GENE    67     64514  -     65692    999    392 aa, chain + ## HITS:1  COG:ubiH KEGG:ns NR:ns ## COG: ubiH COG0654 # Protein_GI_number: 16130809 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     392       1     392     392     753  100.0  0
MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPGFDGRAIALAAGTCQQL
ARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAALGQVVELHNVGQRLFALLR
KAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVAADGTHSALATACGVDWQQEP
YEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDGRCSLVWCHPLERREEVLSWSDE
KFCRELQSAFGWRLGKITHAGKRSAYPLALTHAARSITHRTVLVGNAAQTLHPIAGQGFN
LGMRDVMSLAETLTQAQERGEDMGDYGVLCRYQQRRQSDREATIGVTDSLVHLFANRWAP
LVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
>gi|223713536|gb|ACDM01000062.1| GENE    68     65715  -     66917   1350    400 aa, chain + ## HITS:1  COG:visC KEGG:ns NR:ns ## COG: visC COG0654 # Protein_GI_number: 16130808 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     400       1     400     400     809  100.0  0
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVQEPLAANAPPQLRVSAINAASEKL
LTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNK
AHQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTF
WDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQ
GVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGT
NPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR
>gi|223713536|gb|ACDM01000062.1| GENE    69     67365  -     68459   1360    364 aa, chain + ## HITS:1  COG:gcvT KEGG:ns NR:ns ## COG: gcvT COG0404 # Protein_GI_number: 16130807 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Escherichia coli K12 # 1     364       1     364     364     746  100.0  0
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGS
RTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREK
DLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAG
DLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEM
DETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVRF
TDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREMPVKVTKPVFVRNG
KAVA
>gi|223713536|gb|ACDM01000062.1| GENE    70     68483  -     68872    554    129 aa, chain + ## HITS:1  COG:ECs3775 KEGG:ns NR:ns ## COG: ECs3775 COG0509 # Protein_GI_number: 15833029 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Escherichia coli O157:H7 # 1     129       1     129     129     217  100.0  4e-57
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV
AESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDAT
AYEALLEDE
>gi|223713536|gb|ACDM01000062.1| GENE    71     68991  -     71864   3454    957 aa, chain + ## HITS:1  COG:ECs3774_2 KEGG:ns NR:ns ## COG: ECs3774_2 COG1003 # Protein_GI_number: 15833028 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Escherichia coli O157:H7 # 451     957       1     507     507    1030  100.0  0
MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGA
PATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVS
QGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASDVH
PQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQQVGTTGEIHDYTALISELKSRK
IVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGR
IIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVYHGPVGLKRI
ANRIHRLTDILAAGLQQKGLKLRHAHYFDTLCVEVADKAGVLTRAEAAEINLRSDILNAV
GITLDETTTRENVMQLFNVLLGDNHGLDIDTLDKDVAHDSRSIQPAMLRDDEILTHPVFN
RYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPE
QAEGYQQMIAQLADWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLI
PASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVY
EETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPG
MGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKK
ASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDY
GFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNA
PHIQSELVAEWAHPYSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ
>gi|223713536|gb|ACDM01000062.1| GENE    72     72131  -     72874    253    247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5     247       7     240     242 102  31 2e-20
MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADI
SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR
EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIR
VNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF
IDLAGGK
>gi|223713536|gb|ACDM01000062.1| GENE    73     72931  -     74364   1698    477 aa, chain - ## HITS:1  COG:bglA KEGG:ns NR:ns ## COG: bglA COG2723 # Protein_GI_number: 16130803 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1     477       3     479     479    1004   99.0  0
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVLPGKYYP
NHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELL
KYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN
NQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCML
AMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLD
VLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYAL
CELYEHYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGY
TPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEKL
>gi|223713536|gb|ACDM01000062.1| GENE    74     74409  -     74720    407    103 aa, chain + ## HITS:1  COG:ECs3772 KEGG:ns NR:ns ## COG: ECs3772 COG3097 # Protein_GI_number: 15833026 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     103       1     103     103     187  100.0  4e-48
MQPNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRFEDDGYFCTIEVTATST
VTLDTLTEKHAEQENMTLTELKKVIADIYPGQTQFYVIEFKCL
>gi|223713536|gb|ACDM01000062.1| GENE    75     74884  -     75543    698    219 aa, chain + ## HITS:1  COG:ECs3771 KEGG:ns NR:ns ## COG: ECs3771 COG1272 # Protein_GI_number: 15833025 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Escherichia coli O157:H7 # 1     219       1     219     219     355   99.0  5e-98
MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDLNASATAITSYSLYGGS
MILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPFLLVGLDSPLARGLMIVIW
SLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMAVKLAAGSVTLLAVGGVVYSL
GVIFYVCKRIPYNHAIWHSFVLGGSVCHFLAIYLYIGQA
>gi|223713536|gb|ACDM01000062.1| GENE    76     75739  -     76719   1062    326 aa, chain - ## HITS:1  COG:ygfZ KEGG:ns NR:ns ## COG: ygfZ COG0354 # Protein_GI_number: 16130800 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Escherichia coli K12 # 1     326       1     326     326     627  100.0  1e-179
MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLA
AHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGV
AGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGE
AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDM
EPDSIFRVRDDANTLHIEPLPYSLEE
>gi|223713536|gb|ACDM01000062.1| GENE    77     76962  -     77228    310     88 aa, chain + ## HITS:1  COG:ECs3769 KEGG:ns NR:ns ## COG: ECs3769 COG2938 # Protein_GI_number: 15833023 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      88       1      88      88     171  100.0  4e-43
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMN
HGKPADAELEMMVRLIQTRNRERGPVAI
>gi|223713536|gb|ACDM01000062.1| GENE    78     77209  -     77616    251    135 aa, chain + ## HITS:1  COG:no KEGG:SSON_3049 NR:ns ## KEGG: SSON_3049 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     135       1     135     135     212  100.0  3e-54
MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRI
NARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAE
WRDLRRILLQQETQR
>gi|223713536|gb|ACDM01000062.1| GENE    79     77656  -     78177    786    173 aa, chain - ## HITS:1  COG:ECs3767 KEGG:ns NR:ns ## COG: ECs3767 COG0716 # Protein_GI_number: 15833021 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1     173       1     173     173     342  100.0  2e-94
MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLMEQYDVLILGIPTWDFGE
IQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALGMLHDKLSTKGVKFVGYWP
TEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSWCEQILNEMAEHYA
>gi|223713536|gb|ACDM01000062.1| GENE    80     78289  -     79185    833    298 aa, chain + ## HITS:1  COG:xerD KEGG:ns NR:ns ## COG: xerD COG4974 # Protein_GI_number: 16130796 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Escherichia coli K12 # 1     298       1     298     298     548  100.0  1e-156
MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA
ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER
LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP
LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK
LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>gi|223713536|gb|ACDM01000062.1| GENE    81     79210  -     79920    752    236 aa, chain + ## HITS:1  COG:ECs3765 KEGG:ns NR:ns ## COG: ECs3765 COG1651 # Protein_GI_number: 15833019 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Escherichia coli O157:H7 # 1     236       1     236     236     468  100.0  1e-132
MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYIT
DDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGY
CHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP
ASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK
>gi|223713536|gb|ACDM01000062.1| GENE    82     79926  -     81659   1951    577 aa, chain + ## HITS:1  COG:recJ KEGG:ns NR:ns ## COG: recJ COG0608 # Protein_GI_number: 16130794 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Escherichia coli K12 # 1     577       1     577     577    1157  100.0  0
MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR
DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
>gi|223713536|gb|ACDM01000062.1| GENE    83     81967  -     82848    995    293 aa, chain + ## HITS:1  COG:ECs3763 KEGG:ns NR:ns ## COG: ECs3763 COG1186 # Protein_GI_number: 15833017 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli O157:H7 # 1     293      73     365     365     542  100.0  1e-154
MKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDI
QAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWL
RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ
HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMED
NKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL
>gi|223713536|gb|ACDM01000062.1| GENE    84     82858  -     84375   2035    505 aa, chain + ## HITS:1  COG:lysS KEGG:ns NR:ns ## COG: lysS COG1190 # Protein_GI_number: 16130792 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Escherichia coli K12 # 1     505       1     505     505    1004  100.0  0
MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEE
LEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGD
ILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDES
RNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAP
ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT
LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI
HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG
REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID
RMVMLFTNSHTIRDVILFPAMRPVK
>gi|223713536|gb|ACDM01000062.1| GENE    85     84419  -     84967    419    182 aa, chain - ## HITS:1  COG:idi KEGG:ns NR:ns ## COG: idi COG1443 # Protein_GI_number: 16130791 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Escherichia coli K12 # 1     182       1     182     182     377  100.0  1e-105
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPG
VWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPV
FAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRLSAFTQ
LK
>gi|223713536|gb|ACDM01000062.1| GENE    86     85090  -     85215     81     41 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MNFLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF
>gi|223713536|gb|ACDM01000062.1| GENE    87     85217  -     86665    375    482 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 29     440      15     416     447 149  27 1e-34
MSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSK
EAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLG
IFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYG
NPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFA
IVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRVDGV
GTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQF
VLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVL
QPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLKVRTVRMWLLMRKLKKNEH
GE
>gi|223713536|gb|ACDM01000062.1| GENE    88     87086  -     89020   1044    644 aa, chain + ## HITS:1  COG:ECs3759_2 KEGG:ns NR:ns ## COG: ECs3759_2 COG0493 # Protein_GI_number: 15833013 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli O157:H7 # 158     644       1     487     487    1001   99.0  0
MKGMQMNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAANLVA
CHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDLC
NQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNS
RKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRL
VQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTAL
AMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPP
FKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPH
EDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA
ASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGE
PGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLP
TQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTKAS
>gi|223713536|gb|ACDM01000062.1| GENE    89     89020  -     89508    250    162 aa, chain + ## HITS:1  COG:ygfS KEGG:ns NR:ns ## COG: ygfS COG1142 # Protein_GI_number: 16130788 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1     162       2     163     163     267  100.0  5e-72
MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRLDSISAPVMCHQCEN
APCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCDLC
EQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENPL
>gi|223713536|gb|ACDM01000062.1| GENE    90     89544  -     90911   1195    455 aa, chain - ## HITS:1  COG:ECs3757 KEGG:ns NR:ns ## COG: ECs3757 COG2252 # Protein_GI_number: 15833011 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli O157:H7 # 1     455       1     455     455     711  100.0  0
MSGDILQTPDAPKPQGALDNYFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAG
FPPAAVFVATCLVAGFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISVPVALGAV
FLMGVIFTAISVTGVRTWILRNLPMGIAHGTGIGIGLFLLLIAANGVGMVIKNPIEGLPV
ALGAFTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIAISIIGLIFDPAVKYHGLVAMPS
LTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQIIN
GGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLLILFLSPLS
FLIPGYATAPALMYVGLLMLSNVSKLDFNDFIDAMAGLVCAVFIVLTCNIVTGIMLGFVT
LVVGRVFAREWQKLNIGTVIITAALVAFYAGGWAI
>gi|223713536|gb|ACDM01000062.1| GENE    91     90947  -     92263   1422    438 aa, chain - ## HITS:1  COG:ygfP KEGG:ns NR:ns ## COG: ygfP COG0402 # Protein_GI_number: 16130785 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     438       2     439     439     919  100.0  0
MSGEHTLKAVRGSFIDVTRTIDNPEEIASALRFIEDGLLLIKQGKVEWFGEWENGKHQIP
DTIRVRDYRGKLIVPGFVDTHIHYPQSEMVGAYGEQLLEWLNKHTFPTERRYEDLEYARE
MSAFFIKQLLRNGTTTALVFGTVHPQSVDALFEAASHINMRMIAGKVMMDRNAPDYLLDT
AESSYHQSKELIERWHKNGRLLYAITPRFAPTSSPEQMAMAQRLKEEYPDTWVHTHLCEN
KDEIAWVKSLYPDHDGYLDVYHQYGLTGKNCVFAHCVHLEEKEWDRLSETKSSIAFCPTS
NLYLGSGLFNLKKAWQKKVKVGMGTDIGAGTTFNMLQTLNEAYKVLQLQGYRLSAYEAFY
LATLGGAKSLGLDDLIGNFLPGKEADFVVMEPTATPLQQLRYDNSVSLVDKLFVMMTLGD
DRSIYRTYVDGRLVYERN
>gi|223713536|gb|ACDM01000062.1| GENE    92     92281  -     93681    292    466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 45     453      27     425     447 117  25 5e-25
MSDINHAGSDLIFELEDRPPFHQALVGAITHLLAIFVPMVTPALIVGAALQLSAETTAYL
VSMAMIASGIGTWLQVNRYGIVGSGLLSIQSVNFSFVTVMIALGSSMKSDGFHEELIMSS
LLGVSFVGAFLVVGSSFILPYLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSG
TFGNYEHLGVGLLVLIVVIGFNCCRSPLLRMGGIAIGLCVGYIASLCLGMVDFSSMRNLP
LITIPHPFKYGFSFSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGG
VLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFF
TTIPSAVLGGAMTLMFSMIAIAGIRIIITNGLKRRETLIVATSLGLGLGVSYDPEIFKIL
PASIYVLVENPICAGGLTAILLNIILPGGYRQENVLPGITSAEEMD
>gi|223713536|gb|ACDM01000062.1| GENE    93     93846  -     96716   2894    956 aa, chain - ## HITS:1  COG:ECs3754_2 KEGG:ns NR:ns ## COG: ECs3754_2 COG1529 # Protein_GI_number: 15833008 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli O157:H7 # 160     956       1     797     797    1642   99.0  0
MIIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNGNIVNASL
LIAAQLEKADIRTAESLGKWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPT
REEIDDALSGLFSRDAGWQQYYQVIELAVARKNNPQATIDIAPTFRDDLEVIGKHYPKTD
AAKMVQAKPCYVEDRVTADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPD
IYYTPGGQSAPEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPV
MSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAAS
IHGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRMDGDRLVIHASTQVPWHLR
RQVARLVGMKQHKVHVIKERVGGGFGSKQDILLEEVCAWATCVTGRPVLFRYTREEEFIA
NTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVD
FQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKI
LGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKPQNGDWHIGRGVAIIMQKSGIP
DIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHAL
FDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVS
FGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCG
TPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVL
VPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACGIWLREWHFTPEKILTALEKI
>gi|223713536|gb|ACDM01000062.1| GENE    94     96713  -     97492    857    259 aa, chain - ## HITS:1  COG:ECs3753 KEGG:ns NR:ns ## COG: ECs3753 COG1319 # Protein_GI_number: 15833007 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli O157:H7 # 1     259       1     259     259     504  100.0  1e-143
MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWD
NGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVL
LALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAV
AMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYIT
GVLVADLYADCQQAGEEAV
>gi|223713536|gb|ACDM01000062.1| GENE    95     97543  -     98871   1315    442 aa, chain - ## HITS:1  COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1     442      23     464     464     916  100.0  0
MLILKNVTAVQLHPAKVQEGVDIAIENDVIVAIGDALTQRYPDASFKEMHGRIVMPGIVC
SHNHFYSGLSRGIMANIAPCPDFISTLKNLWWRLDRALDEESLYYSGLICSLEAIKSGCT
SVIDHHASPAYIGGSLSTLRDAFLKVGLRAMTCFETTDRNNGIKELQEGVEENIRFARLI
DEAKKATSEPYLVEAHIGAHAPFTVPDAGLEMLREAVKATGRGLHIHAAEDLYDVSYSHH
WYGKDLLARLAQFDLIDSKTLVAHGLYLSKDDITLLNQRDAFLVHNARSNMNNHVGYNHH
LSDIRNLALGTDGIGSDMFEEMKFAFFKHRDAGGPLWPDSFAKALTNGNELMSRNFGAKF
GLLEAGYKADLTICDYNSPTPLLADNIAGHIAFGMGSGSVHSVMVNGVMVYEDRQFNFDC
DSIYAQARKAAASMWRRMDALA
>gi|223713536|gb|ACDM01000062.1| GENE    96     98874  -    101972   2690   1032 aa, chain - ## HITS:1  COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 451    1032       1     582     582    1235  100.0  0
MGDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAG
PHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWD
EYLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFA
QYRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAIC
RYMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERL
MALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLP
ISYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVER
LNRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEH
RYADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQR
WHKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPA
ELIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVW
KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAW
REEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDS
LITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTA
RRATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLE
CNYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKIT
VFSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVH
QHHHYLLGRVEV
>gi|223713536|gb|ACDM01000062.1| GENE    97    102294  -    102872    213    192 aa, chain - ## HITS:1  COG:ygfJ KEGG:ns NR:ns ## COG: ygfJ COG2068 # Protein_GI_number: 16130779 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Escherichia coli K12 # 1     192       1     192     192     395   99.0  1e-110
MSAIDCIITAAGLSSRMGQWKMMLPWEQGTILDTSIKNALQFCSRIILVTGYRGNELHER
YANQSNITIIHNPDYAQGLLTSVKAAVPEVQTEHCFLTHGDMPTLTIDIFRKIWSLRNDG
AILPLHNGIPGHPILVSKPCLMQAIQRPNVTNMRQALLMGDHYSVEIENAEIILDIDTPD
DFITAKERYTEI
>gi|223713536|gb|ACDM01000062.1| GENE    98    103143  -    103745    225    200 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_2996 NR:ns ## KEGG: ECIAI1_2996 # Name: yqeC # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1     200      57     256     256     419  100.0  1e-116
MFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFTPEAIDALVQRPECD
VILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRWSQFADITG
LTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQCENAIAQSELLQPLQQHDV
EAIWLGDIQEHPAIARRFVN
>gi|223713536|gb|ACDM01000062.1| GENE    99    103793  -    105418   1338    541 aa, chain + ## HITS:1  COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 1     541       1     541     541    1048  100.0  0
MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSIVGTIGGGMVERKVIEE
SLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGMRPRLVLIGAGHVNRAIAQ
SAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAVEALDIRPDNFVLIATNNQDR
EALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEEHIARLHAPVGYNIGAETPQEIA
ISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGAGDIASGVALRLYHAGFKVIMLEVE
KPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSAEAMKLTERGFIPVMVDPACSLLDELK
PLCVVDAILAKQNLGTRADMAPVTIALGPGFTAGKDCHAVIETNRGHWLGQVIYSGCAQE
NTGVPGNIMGHTTRRVIRAPAAGIMRSNVKLGDLVKEGDVIAWIGEHEIKAPLTGMVRGL
LNDGLAVVGGFKIGDIDPRGETADFTSVSDKARAIGGGVLEALMMLMHQGVKATKEVLEV
A
>gi|223713536|gb|ACDM01000062.1| GENE   100    105639  -    106571   1234    310 aa, chain - ## HITS:1  COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1     310       1     310     310     564  100.0  1e-161
MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIVTHGNGPQVGMINQAFE
AAAKTEAHSPMLPMSVCVALSQGYIGYDLQNALREELLSRGINKPVATLVTQVEVDANDP
AFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVVASPKPVDIIEKETVKALVDA
GQVVITVGGGGIPVIREGNHLRGASAVIDKDWASARLAEMIDADMLIILTAVEKVAINFG
KENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAAASFARSRAGREALITVLSKAKEGI
EGKTGTVICQ
>gi|223713536|gb|ACDM01000062.1| GENE   101    106619  -    108004   1031    461 aa, chain - ## HITS:1  COG:ECs3746 KEGG:ns NR:ns ## COG: ECs3746 COG0044 # Protein_GI_number: 15833000 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli O157:H7 # 1     461       5     465     465     984  100.0  0
MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEIDATGCYVFPGGVDVHT
HFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCRLRHQLEVYRGYAAHKAVI
DYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKLNDDEVLQALRRLHESGALTT
VHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHL
SNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYDTEDGMKFILSPPLRNVREQDKLWC
GISDGAIDVVATDHCTFSMAQRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITPE
RFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQQIQHRHLHDNADYSPWEGFT
CQGAIVRTLSRGETIFCDGTFTGKAGRGRFLRRKPFVPPVL
>gi|223713536|gb|ACDM01000062.1| GENE   102    108057  -    109268   1648    403 aa, chain - ## HITS:1  COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 1     403       1     403     403     848  100.0  0
MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEID
PMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMA
SMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYIIEQSGIRPEFVVSTEPTDCQV
YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRP
SWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGI
PVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWLATE
>gi|223713536|gb|ACDM01000062.1| GENE   103    109326  -    110522   1169    398 aa, chain - ## HITS:1  COG:ECs3744 KEGG:ns NR:ns ## COG: ECs3744 COG1171 # Protein_GI_number: 15832998 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1     398       1     398     398     827  100.0  0
MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRPTPLCALDDLANLFGVK
KILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTD
GNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQ
QHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGV
LGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWE
ILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLM
EKLALNKDAVVLVISTEGDTDVKHYREVVWEGKHAVAP
>gi|223713536|gb|ACDM01000062.1| GENE   104    110580  -    111767   1470    395 aa, chain - ## HITS:1  COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1     395       2     396     396     805   99.0  0
MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSG
LGISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGI
RDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFG
SLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAK
NNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCL
AQNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEA
SWKPYIIAAMILSRKYAKPGALLEQLLKEAQERVK
>gi|223713536|gb|ACDM01000062.1| GENE   105    112246  -    114024   1018    592 aa, chain + ## HITS:1  COG:ygeV KEGG:ns NR:ns ## COG: ygeV COG3829 # Protein_GI_number: 16130771 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1     592       1     592     592    1181  100.0  0
MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS
RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH
EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN
RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN
IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG
ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL
IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF
IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI
LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL
DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT
>gi|223713536|gb|ACDM01000062.1| GENE   106    114064  -    114543    333    159 aa, chain - ## HITS:1  COG:ygeU KEGG:ns NR:ns ## COG: ygeU COG2080 # Protein_GI_number: 16130770 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Escherichia coli K12 # 1     159       1     159     159     295  100.0  2e-80
MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTA
IDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK
PREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK
>gi|223713536|gb|ACDM01000062.1| GENE   107    114540  -    115418    622    292 aa, chain - ## HITS:1  COG:ygeT KEGG:ns NR:ns ## COG: ygeT COG1319 # Protein_GI_number: 16130769 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli K12 # 1     292       1     292     292     572  100.0  1e-163
MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRG
ITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAGPQIRNVATYGGNICNGAT
SADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAG
SAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLN
LQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ
>gi|223713536|gb|ACDM01000062.1| GENE   108    115429  -    117726   1822    765 aa, chain - ## HITS:1  COG:ygeS KEGG:ns NR:ns ## COG: ygeS COG1529 # Protein_GI_number: 16130768 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli K12 # 14     765       1     752     752    1530  100.0  0
MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQA
RSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAIVVARD
ELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQQTIDAAD
YQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQALDIPWSCVR
VIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMG
VNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAG
AMRGYGAPQVVFAVESMLDDAATALGIDPVEIRLRNAAREGDANPLTGKRIYSAGLPECL
EKGRKIFEWEKRRAECQNQQGNLRRGVGVACFSYTSNTWPVGVEIAGARLLMNQDGTINV
QSGATEIGQGADTVFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPAL
RSAALLLKEKIIAHAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERG
GQLSAESSIKTTTNPPAFGCTFVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHG
GMGMGIGWALFEEMIIDAKSGVVRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKS
LGEPPIIPVAAAIRNAVKMATGVAINTLPLTPKRLYEEFHLAGLI
>gi|223713536|gb|ACDM01000062.1| GENE   109    118141  -    118896    375    251 aa, chain + ## HITS:1  COG:ygeR KEGG:ns NR:ns ## COG: ygeR COG0739 # Protein_GI_number: 16130767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli K12 # 1     251       9     259     259     448   99.0  1e-126
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
VKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPP
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC
>gi|223713536|gb|ACDM01000062.1| GENE   110    119339  -    120817    601    492 aa, chain + ## HITS:1  COG:Z5878_2 KEGG:ns NR:ns ## COG: Z5878_2 COG0582 # Protein_GI_number: 15804857 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 EDL933 # 312     484       5     173     205      84   36.0  4e-16
MAYSRHIKAALRAIHADRPNASYGEMREHLRDIAEWELSTGRSDLFEPDMRDLYRDQYGE
VGENLVNALASEPLTIDQHRYINEALNVLKACMKRIEAGDSQPLIDYIDEFDATDRFNDQ
VSASLSVSAPQELSIPEGKSSITVASLFEQYEQENALNWKPATLSENKASHSALIEIFDY
LGLNADANAIKRADMLRVRDVLQQLPKNRKQRFKDAPLVDLLDREDKTDCLDVVTINNKY
LIKMAAVFKWAVRNDLIKKNMSEGLELKVPQRKASEARNAFSTEQVGQLLGAAKVYSQKS
SGKPYHYYVTALAAITGARLNEVAQLQVKDVRTTGAGTVYIHINEDDSSLPGKSIKNAHS
DRCVPLVDGAYGFVLADFMTLVEARRGTDGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLP
KVLADRDGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVGV
MNDVYKETAAHG
>gi|223713536|gb|ACDM01000062.1| GENE   111    120810  -    121451    227    213 aa, chain + ## HITS:1  COG:no KEGG:ROD_49471 NR:ns ## KEGG: ROD_49471 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 4     213       5     209     209     323   76.0  2e-87
MAEYYPPEFGKSRFHCSHCGVYAQQHWKDLIYKPLEGYSNIAETPMSITICEHCDELSYW
LLGQLIYPSSSSVEMPNPDMPEDCKADYMEARSIINLSPKGAAALLRLCLQKLMVHLGEP
GNNINADIKSLVEKGLPPRIQQAADVCRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIV
DDRITRPKEIEAMFQSMPEGPRQGIEKRDKKTA
>gi|223713536|gb|ACDM01000062.1| GENE   112    121952  -    122515    402    187 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3437 NR:ns ## KEGG: ECO103_3437 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     187       1     187     187     355   98.0  4e-97
MSNKHKHAGHIIIIKGHSFKSNENGMWNLTEIWKILGLPNNKLPSQWRGKVTKRLTDMQK
MHVEKSGIESITYADKQATLKYAGWVSEDFEDMVYAAFESILEMPEVATVIANKMVELGY
HTEAELLERHKDDYREAMQTLNKIGKRVDGVKPERIYKAVLHGNLTKSQGLSMISRSSVW
YARTVNL
>gi|223713536|gb|ACDM01000062.1| GENE   113    122885  -    123112    219     75 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256024629|ref|ZP_05438494.1| ## NR: gi|256024629|ref|ZP_05438494.1| hypothetical protein E4_14724 [Escherichia sp. 4_1_40B] # 1      75      83     157     157     155  100.0  8e-37
MAFTSEMLGLLFAVVFGDDKSLEAMGTYIACNEASSPDHGFHVTYELYMSGLAEAFNEVC
EDKPVIGFLNYLMQD
>gi|223713536|gb|ACDM01000062.1| GENE   114    123559  -    124353    332    264 aa, chain + ## HITS:1  COG:no KEGG:EcHS_A3023 NR:ns ## KEGG: EcHS_A3023 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1     264      15     278     528     522   99.0  1e-147
MKGKSALTLLLAGIFSCGTCQATGAEVTSESVFNILNSTGAATDKSYLSLNPDKYPNYRL
LIHSAKLQNEIKSHYTKDEIQGLLTLTENTRKLTLTEKPWGTFILASTFEDDKTAAETHY
DAVWLRDSLWGYMALVSDQGNSVAAKKVLLTLWDYMSTPDQIKRMQDVISNPKRLDGIPV
QMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQNDALGLYLDLLIQAINTGTINAEDWQKG
DRLKSVALLIAYLDKANFYVMEDS
>gi|223713536|gb|ACDM01000062.1| GENE   115    124399  -    125169    212    256 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_3187 NR:ns ## KEGG: EcE24377A_3187 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     256     295     550     550     494   98.0  1e-138
MTSGLERLSNLLSKKDSVFVSDLLREAKVNELDETLSTTRLNHLIDKGYERITLQLDLGG
ESPGYLEKDKHYREADAALLNVIYPTNLSKINTRRKEQVLKIVKKLAGPYGIKRYEKDNY
QSANFWFNDIKTDTDQNSHAKREKSFIPSTEAEWFFDSWYAKSAAIVYKESRKEEYLNDS
VQFMNRSLAQITGENMIGANGRSVPEMALPESYNYIHKSGTLHEAPSPIIPLNWSKASMT
LMLKEMSNLINDEGIK
>gi|223713536|gb|ACDM01000062.1| GENE   116    125907  -    126248    348    113 aa, chain + ## HITS:1  COG:ECs3726 KEGG:ns NR:ns ## COG: ECs3726 COG1886 # Protein_GI_number: 15832980 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Escherichia coli O157:H7 # 1     113     216     328     328     211   95.0  3e-55
MADHFEYEEDFETDDFDIKKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDE
LCAKRIISLLSESEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGHNNVK
>gi|223713536|gb|ACDM01000062.1| GENE   117    126385  -    126903    162    172 aa, chain + ## HITS:1  COG:ECs3725 KEGG:ns NR:ns ## COG: ECs3725 COG4790 # Protein_GI_number: 15832979 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscR # Organism: Escherichia coli O157:H7 # 1     172      50     221     221     280   98.0  7e-76
MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP
ELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL
VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLSINP
>gi|223713536|gb|ACDM01000062.1| GENE   118    126913  -    127173    153     86 aa, chain + ## HITS:1  COG:ECs3724 KEGG:ns NR:ns ## COG: ECs3724 COG4794 # Protein_GI_number: 15832978 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscS # Organism: Escherichia coli O157:H7 # 1      86       1      86      86     148   98.0  3e-36
MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF
FLMSGWYGERLYSFGIEMLNLAFARG
>gi|223713536|gb|ACDM01000062.1| GENE   119    127706  -    127942    178     78 aa, chain + ## HITS:1  COG:ECs3722 KEGG:ns NR:ns ## COG: ECs3722 COG4791 # Protein_GI_number: 15832976 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscT # Organism: Escherichia coli O157:H7 # 1      78       1      78      78     116  100.0  8e-27
MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE
RVMPLSFFPEQLQLYIEK
>gi|223713536|gb|ACDM01000062.1| GENE   120    127951  -    128682    351    243 aa, chain + ## HITS:1  COG:ECs3721 KEGG:ns NR:ns ## COG: ECs3721 COG1377 # Protein_GI_number: 15832975 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli O157:H7 # 1     235       1     235     373     441   96.0  1e-124
MANKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFDVHHIMSILEYILDH
NAKPDIWDYFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLDSLNPVN
GLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWGEMLFL
LILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERIRKFF
LSN
>gi|223713536|gb|ACDM01000062.1| GENE   121    128709  -    129071    226    120 aa, chain + ## HITS:1  COG:ECs3721 KEGG:ns NR:ns ## COG: ECs3721 COG1377 # Protein_GI_number: 15832975 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli O157:H7 # 1     120     254     373     373     227   94.0  4e-60
MIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT
HRRYDYVSFENIDEILRLLLWLEDVENAGQPVPDEQLSSEDKFIEGEEKEIENKDDNLKN
>gi|223713536|gb|ACDM01000062.1| GENE   122    129428  -    129928    166    166 aa, chain - ## HITS:1  COG:ECs3720 KEGG:ns NR:ns ## COG: ECs3720 COG2771 # Protein_GI_number: 15832974 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     166       1     166     166     296   95.0  2e-80
MQVFSSDVYFTVVTNALLASQKEYYSDLVALVDLGHSFVVIDEHQHRNLKPNTEPVNILL
SNNFIRINKNIRLSDLTHFLISNLHTQNVYSTQEALTHDDIDILRLCVSYSLKQVAIIKG
IDYKTVSYHKIRALNKLNIKGTVELFIALCEWDKHYFKLQSCVRES
>gi|223713536|gb|ACDM01000062.1| GENE   123    130185  -    131366    304    393 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3424 NR:ns ## KEGG: ECO103_3424 # Name: not_defined # Def: type III secretion protein EprH # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     393       1     393     393     739   99.0  0
MENNDKFLSQDLLESYAIRLLSGPLNGCEYEILNGRLLVIIGNDVSLGRSDAFSELPENT
IVVPYGELTGSFEIIITTDPDLVVTFRELTAQEPEDRTLTLNQQIEVLGLKFAVKEKNEV
WQYSLPGIIENNIISTKQHFFSSKLFKYVMLFFLFAIIFIAFYIVNASNDPQLRHIDKIL
VNKNRNYEILYGRDHVIYINTNILDEAVWVKQALEKNQPGKPVRVINPDDESIRIFSWLA
DNFPDLQYFKLQLLDASNLRLTVSKQRNAITQQLIDNLIKGLLQTMPYASNISIAVLDDN
VLESQAIETLSAIGLSYEKYKTANNVYFNIIGTLSDSELNKINNYVDEYYKQWGKQYVRF
NVNLKNQDTNNSSFSYGDNRFEKSQGSKWTFQE
>gi|223713536|gb|ACDM01000062.1| GENE   124    131380  -    131619    281     79 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3190 NR:ns ## KEGG: ECUMN_3190 # Name: prgI # Def: type III secretion system needle protein # Organism: E.coli_UMN026 # Pathway: Bacterial secretion system [PATH:eum03070] # 1      79       1      79      79     135  100.0  6e-31
MADWNGYIMDISKQFDQGVDDLNQQVEKALEDLATNPSDPKFLAEYQSALAEYTLYRNAQ
SNVVKAYKDLDSAIIQNFR
>gi|223713536|gb|ACDM01000062.1| GENE   125    131639  -    131971    257    110 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_4132 NR:ns ## KEGG: ECH74115_4132 # Name: eprJ # Def: type III secretion apparatus protein EprJ # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     110       1     110     110     187  100.0  7e-47
MSVSNMPPIDRAEQSTAHEIQQAKVIDLNDRVLNLDNPDDKMISAFANYAVQTENWQQNA
LQALTSDKKGLTPEKLLVLQDHVLNYNVEVSLVGTLARKIVAAVETLTRS
>gi|223713536|gb|ACDM01000062.1| GENE   126    131968  -    132702     99    244 aa, chain + ## HITS:1  COG:ECs3716 KEGG:ns NR:ns ## COG: ECs3716 COG4669 # Protein_GI_number: 15832970 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, lipoprotein EscJ # Organism: Escherichia coli O157:H7 # 1     244       1     244     244     457  100.0  1e-129
MKYISLLLFILLLCGCKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEP
TDFASAVDWLKIYNLPGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDG
IVSSRVHVSYDVDTGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYEN
ISVVLSKRRDIIEQAPTYEISEPVFAYDKAMPVSILLALISVATCWLLWKYRAILTNLVR
LKIK
>gi|223713536|gb|ACDM01000062.1| GENE   127    133240  -    133947    244    235 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3186 NR:ns ## KEGG: ECUMN_3186 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     235      22     256     256     398   89.0  1e-110
MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGY
YDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVT
KLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQ
EFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
>gi|223713536|gb|ACDM01000062.1| GENE   128    133869  -    134042     93     57 aa, chain - ## HITS:1  COG:no KEGG:Z4177 NR:ns ## KEGG: Z4177 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 14      57       1      44      44      62   79.0  6e-09
MRKKIPQALKNHEMIKILQLDYIQIIKLEPGSYKSSGLAKTELFISKECVSNIFSTK
>gi|223713536|gb|ACDM01000062.1| GENE   129    134169  -    134324    120     51 aa, chain + ## HITS:1  COG:ECs3712 KEGG:ns NR:ns ## COG: ECs3712 COG2197 # Protein_GI_number: 15832966 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1      51       1      51     210     105   98.0  1e-23
MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTA
>gi|223713536|gb|ACDM01000062.1| GENE   130    134358  -    134801     81    147 aa, chain + ## HITS:1  COG:ECs3712 KEGG:ns NR:ns ## COG: ECs3712 COG2197 # Protein_GI_number: 15832966 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     147      64     210     210     296  100.0  1e-80
MGAELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISN
GYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHR
LNIMKKLDVHSGIELIKTALRMGVCTI
>gi|223713536|gb|ACDM01000062.1| GENE   131    134846  -    135082     78     78 aa, chain - ## HITS:1  COG:pbl KEGG:ns NR:ns ## COG: pbl COG0741 # Protein_GI_number: 16130758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1      78      61     138     138     167  100.0  4e-42
MHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQK
KRQQYAPKYILYIPGLMN
>gi|223713536|gb|ACDM01000062.1| GENE   132    135150  -    135338     88     62 aa, chain + ## HITS:1  COG:no KEGG:ECSE_3112 NR:ns ## KEGG: ECSE_3112 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      62      11      72      72      91  100.0  8e-18
MLSFFRLLSTRAIALIKFGSILNIVPASLEQELLAKDIFVINIQNVKMVKNLTFGERIFF
HV
>gi|223713536|gb|ACDM01000062.1| GENE   133    135405  -    135623    146     72 aa, chain - ## HITS:1  COG:no KEGG:JW5456 NR:ns ## KEGG: JW5456 # Name: ygeI # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      72       1      72      72     120  100.0  2e-26
MTNPIGINNLSQSSNIANATGDEVVSLDKHINTSATDTDQIQAFIVSTWMAPFQNDMYSE
DNPISPYYKIEW
>gi|223713536|gb|ACDM01000062.1| GENE   134    135791  -    137170    218    459 aa, chain - ## HITS:1  COG:ygeH_2 KEGG:ns NR:ns ## COG: ygeH_2 COG0457 # Protein_GI_number: 16130756 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 115     459       1     345     345     676  100.0  0
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVVLLESAGHVVLKDMIIES
VWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYS
IAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKP
DYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPER
SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC
LLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI
LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV
PNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR
>gi|223713536|gb|ACDM01000062.1| GENE   135    137505  -    138029    142    174 aa, chain - ## HITS:1  COG:ygeG KEGG:ns NR:ns ## COG: ygeG COG0457 # Protein_GI_number: 16130755 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 12     174       1     163     163     298   99.0  5e-81
MASRDTSQRNILSTETIEIFNNSDEWANQLKHALSKGENLALLHGLTPDILDRIYAYAFD
YHEKGNITDAEIYYKFLCIYAFENHEYLKDFASVCQPKKKYQQAYDLYKLSYNYFPYDDY
SVIYRMGQCQIGAKNIDNAMQCFYHIINNCEDDSVKSKAQAYIELLNDNSEDNG
>gi|223713536|gb|ACDM01000062.1| GENE   136    138904  -    139329    139    141 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_3178 NR:ns ## KEGG: ECUMN_3178 # Name: yqeK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     141       1     141     141     223   97.0  1e-57
MDIEFSQIHEMVYMHDIVNSDSKKKPRIPLKKFLNAENVLTQTTSWTLNSRYVNVNSVNK
VNVKSKVKNSYISRSVNDEFSLTDDEINSFKETLVLSSIDSLSKLVLNNPLSVLFTSTVR
RNNNRAKMNVEFDSWICTRCC
>gi|223713536|gb|ACDM01000062.1| GENE   137    139478  -    139960     97    160 aa, chain - ## HITS:1  COG:no KEGG:JW5455 NR:ns ## KEGG: JW5455 # Name: yqeJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     160       1     160     160     315  100.0  2e-85
MIDYKKNLLFILVFISGFILFTVYSYTAEKMIYNETCTANWVIFNDQGRANLTIDFMYNK
KNKTGTVALSGTWQQGNRESKSIRRNIEYTWIENYDTAHLTSKKVNKFEIMDQVDDDRLA
QLIPDFYVFPEKSVSYNILKQGKHAFILSIGNRAIMHCAR
>gi|223713536|gb|ACDM01000062.1| GENE   138    139953  -    140288    178    111 aa, chain - ## HITS:1  COG:yqeI KEGG:ns NR:ns ## COG: yqeI COG3710 # Protein_GI_number: 16130751 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Escherichia coli K12 # 1     111     159     269     269     239  100.0  1e-63
MLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRIL
DSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREVNRD
>gi|223713536|gb|ACDM01000062.1| GENE   139    141096  -    141614    172    172 aa, chain - ## HITS:1  COG:yqeH KEGG:ns NR:ns ## COG: yqeH COG2771 # Protein_GI_number: 16130750 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1     172      59     230     230     345   99.0  2e-95
MWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL
VSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFT
IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH
>gi|223713536|gb|ACDM01000062.1| GENE   140    142188  -    143417    615    409 aa, chain - ## HITS:1  COG:ECs3702 KEGG:ns NR:ns ## COG: ECs3702 COG0814 # Protein_GI_number: 15832956 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1     409       1     409     409     707  100.0  0
MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQ
FILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHM
VIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLL
TTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLI
ICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKS
FLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYA
ISGPLIAMILFIMPTLSTYLIPALKPWRSIGNLITLIVGILCVSVMFFS
>gi|223713536|gb|ACDM01000062.1| GENE   141    143672  -    144853    997    393 aa, chain + ## HITS:1  COG:yqeF KEGG:ns NR:ns ## COG: yqeF COG0183 # Protein_GI_number: 16130748 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1     393       2     394     394     719  100.0  0
MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAG
AGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSR
APHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLAREYGISRQLQDAYAL
SSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGS
VTAGNASSINDGAAAVMMMSEAKARALNLPVLARIRAFASVGVDPALMGIAPVYATRRCL
ERVGWQLAEVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVS
LVHEMVKRNARKGLATLCIGGGQGVALTIERDE
>gi|223713536|gb|ACDM01000062.1| GENE   142    145248  -    145976    690    242 aa, chain + ## HITS:1  COG:kduI KEGG:ns NR:ns ## COG: kduI COG3717 # Protein_GI_number: 16130747 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Escherichia coli K12 # 1     242      37     278     278     512  100.0  1e-145
MVYSHIDRIIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCY
EIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNL
TSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACV
FHMMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
LR
>gi|223713536|gb|ACDM01000062.1| GENE   143    146006  -    146767    752    253 aa, chain + ## HITS:1  COG:kduD KEGG:ns NR:ns ## COG: kduD COG1028 # Protein_GI_number: 16130746 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     253       1     253     253     493  100.0  1e-139
MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRFL
SLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSV
FFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHN
INVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVN
GYTIAVDGGWLAR
>gi|223713536|gb|ACDM01000062.1| GENE   144    147142  -    148500   1390    452 aa, chain + ## HITS:1  COG:ECs3698 KEGG:ns NR:ns ## COG: ECs3698 COG0477 # Protein_GI_number: 15832952 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     452      21     472     472     817  100.0  0
MNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNG
WLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEM
ASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPN
SPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVF
LGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDK
AGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVV
WILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVG
ITFWLIPETKNVTLEHIERKLMAGEKLRNIGV
>gi|223713536|gb|ACDM01000062.1| GENE   145    148629  -    149321    692    230 aa, chain + ## HITS:1  COG:ECs3697 KEGG:ns NR:ns ## COG: ECs3697 COG1794 # Protein_GI_number: 15832951 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Escherichia coli O157:H7 # 1     230       1     230     230     456   99.0  1e-128
MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKT
GDILAEAALGLQRTGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRV
ALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYYAQ
VIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFMLS
>gi|223713536|gb|ACDM01000062.1| GENE   146    149308  -    150243    752    311 aa, chain - ## HITS:1  COG:lysR KEGG:ns NR:ns ## COG: lysR COG0583 # Protein_GI_number: 16130743 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     311       1     311     311     579   99.0  1e-165
MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHP
TVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARY
PDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSLDEVCVLPPGHPLAV
KKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHNAASVCAMVRAGVGV
SVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSGHLQAGLPKLVTS
LDAILSSATTA
>gi|223713536|gb|ACDM01000062.1| GENE   147    150365  -    151627   1213    420 aa, chain + ## HITS:1  COG:lysA KEGG:ns NR:ns ## COG: lysA COG0019 # Protein_GI_number: 16130742 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Escherichia coli K12 # 1     411       1     411     420     830   99.0  0
MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIH
ILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVN
AGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR
HHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD
TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSHHFVLVDA
GFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRA
LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL
>gi|223713536|gb|ACDM01000062.1| GENE   148    151634  -    152665    918    343 aa, chain - ## HITS:1  COG:galR KEGG:ns NR:ns ## COG: galR COG1609 # Protein_GI_number: 16130741 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     343       1     343     343     658  100.0  0
MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTE
TVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALV
VHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTRIG
YLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGEPDESGGEQAMTELLGRGRNFTA
VACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA
ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD
>gi|223713536|gb|ACDM01000062.1| GENE   149    153250  -    155409   1985    719 aa, chain + ## HITS:1  COG:aas_2 KEGG:ns NR:ns ## COG: aas_2 COG0318 # Protein_GI_number: 16130740 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 198     719       1     522     522    1065  100.0  0
MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGILLGLFLPVRPVFAVYTS
ISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVIFPEGRITTTGSLMKIYDG
AGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQVAMPDAPRARD
RRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTK
TLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAIARRRMPAMMNYTAGVKGLTSAITA
AEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQV
KQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFG
LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPYDFYR
LRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGM
DARLLSVPGIEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVR
FDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFT
TDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE
>gi|223713536|gb|ACDM01000062.1| GENE   150    155402  -    156595   1331    397 aa, chain + ## HITS:1  COG:ygeD KEGG:ns NR:ns ## COG: ygeD COG0477 # Protein_GI_number: 16130739 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     397       1     397     397     642  100.0  0
MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVG
AYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAAYSPAK
YGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVA
NIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGETRFSLVGTSLFWGAGVTLRFLLV
LWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVLIFS
LQHELLPAYALLMLIGVMGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLG
IYSLAVMIGIPVVPIGIGFGALFALAITALWIWQRRH
>gi|223713536|gb|ACDM01000062.1| GENE   151    156627  -    157667   1133    346 aa, chain - ## HITS:1  COG:tas KEGG:ns NR:ns ## COG: tas COG0667 # Protein_GI_number: 16130738 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     346       1     346     346     699  100.0  0
MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE
TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR
LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN
ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT
LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQP
FVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYPAP
>gi|223713536|gb|ACDM01000062.1| GENE   152    157775  -    157993    264     72 aa, chain - ## HITS:1  COG:no KEGG:G2583_3488 NR:ns ## KEGG: G2583_3488 # Name: ygdR # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      72       1      72      72     132  100.0  4e-30
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ
INRDDVSQIIER
>gi|223713536|gb|ACDM01000062.1| GENE   153    158131  -    158844    794    237 aa, chain - ## HITS:1  COG:ECs3689 KEGG:ns NR:ns ## COG: ECs3689 COG0861 # Protein_GI_number: 15832943 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Escherichia coli O157:H7 # 1     237       1     237     237     381  100.0  1e-106
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRLGLAGAMVMR
LALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKT
RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARSIGDFVE
RHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAMFFSIAVESLNLIRNKKNPL
>gi|223713536|gb|ACDM01000062.1| GENE   154    158913  -    159602    674    229 aa, chain - ## HITS:1  COG:mutH KEGG:ns NR:ns ## COG: mutH COG3066 # Protein_GI_number: 16130735 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair protein # Organism: Escherichia coli K12 # 1     229       1     229     229     433  100.0  1e-121
MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENLKRDKGWIGVLLEIWLG
ASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRV
LWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVERITARHGEY
LQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFTSALLARHFLIQ
>gi|223713536|gb|ACDM01000062.1| GENE   155    159788  -    159934     73     48 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3390 NR:ns ## KEGG: ECO103_3390 # Name: ygdT # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      48       1      48      48      95  100.0  5e-19
MLSTESWDNCEKPPLLFPFTALTCDETPVFSGSVLNLVAHSVDKYGIG
>gi|223713536|gb|ACDM01000062.1| GENE   156    160287  -    160817    271    176 aa, chain + ## HITS:1  COG:ECs3687 KEGG:ns NR:ns ## COG: ECs3687 COG0494 # Protein_GI_number: 15832941 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     340  100.0  1e-93
MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGL
SRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPE
FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPKPQNASAYRRKRG
>gi|223713536|gb|ACDM01000062.1| GENE   157    160830  -    163076   2099    748 aa, chain + ## HITS:1  COG:ptsP KEGG:ns NR:ns ## COG: ptsP COG3605 # Protein_GI_number: 16130733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction protein containing GAF and PtsI domains # Organism: Escherichia coli K12 # 1     748       1     748     748    1434  100.0  0
MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCYYLMATRGLKK
PRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIQRRQ
LLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLTALFGQYRQTRIRALPAAPGV
AIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAA
IFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVIEKFAEQFAALSDNYLKERAGDLRA
LGQRLLFHLDDANQGPNAWPERFILVADELSATTLAELPQDRLVGVVVRDGAANSHAAIM
VRALGIPTVMGADIQPSVLHRRTLIVDGYRGELLVDPEPVLLQEYQRLISEEIELSRLAE
DDVNLPAQLKSGERIKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQV
AQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVR
AMLRANAATGNLNILLPMVTSLDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPS
MVFMLPHLAKRVDFISVGTNDLTQYILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEI
HGIDLRLCGEMAGDPMCVAILIGLGYRHLSMNGRSVARAKYLLRRIDYAEAENLAQRSLE
AQLATEVRHQVAAFMERRGMGGLIRGGL
>gi|223713536|gb|ACDM01000062.1| GENE   158    163227  -    164102   1130    291 aa, chain + ## HITS:1  COG:ECs3685 KEGG:ns NR:ns ## COG: ECs3685 COG0682 # Protein_GI_number: 15832939 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Escherichia coli O157:H7 # 1     291       1     291     291     548  100.0  1e-156
MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRRANRPGSGWTKNEVENL
LYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSFHGGLIGVIVVMIIFARRT
KRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFPFAMLFPGSRTEDILLLQTN
PQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYIRKPRPMGAVSGLFLIGYGAFRI
IVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVIMMVWAYRRSPQQHVS
>gi|223713536|gb|ACDM01000062.1| GENE   159    164130  -    164903    920    257 aa, chain + ## HITS:1  COG:ECs3684 KEGG:ns NR:ns ## COG: ECs3684 COG0207 # Protein_GI_number: 15832938 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Escherichia coli O157:H7 # 1     257       8     264     264     553  100.0  1e-158
MQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDT
NIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRR
IIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHM
MAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDF
EIEGYDPHPGIKAPVAI
>gi|223713536|gb|ACDM01000062.1| GENE   160    165087  -    165557    253    156 aa, chain + ## HITS:1  COG:ppdA KEGG:ns NR:ns ## COG: ppdA COG2165 # Protein_GI_number: 16130730 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1     156       1     156     156     291   99.0  4e-79
MKTQRGYTLIETLVAMLILVTLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWH
NRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTA
WAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
>gi|223713536|gb|ACDM01000062.1| GENE   161    165548  -    166111    648    187 aa, chain + ## HITS:1  COG:ppdB KEGG:ns NR:ns ## COG: ppdB COG4795 # Protein_GI_number: 16130729 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Escherichia coli K12 # 1     187       1     187     187     382  100.0  1e-106
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
HLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASY
SVTGFNL
>gi|223713536|gb|ACDM01000062.1| GENE   162    166108  -    166515    254    135 aa, chain + ## HITS:1  COG:no KEGG:B21_02633 NR:ns ## KEGG: B21_02633 # Name: ygdB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     135       1     135     135     219   99.0  4e-56
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKM
HSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGW
SDFCPLKERALYQLP
>gi|223713536|gb|ACDM01000062.1| GENE   163    166557  -    166823     83     88 aa, chain + ## HITS:1  COG:ppdC KEGG:ns NR:ns ## COG: ppdC COG4967 # Protein_GI_number: 16130727 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilV # Organism: Escherichia coli K12 # 1      88      20     107     107     153  100.0  9e-38
MVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQA
GCVSISVTLVSPGGREGEMTRLHCPNRQ
>gi|223713536|gb|ACDM01000062.1| GENE   164    166836  -    170204   3235   1122 aa, chain + ## HITS:1  COG:recC KEGG:ns NR:ns ## COG: recC COG1330 # Protein_GI_number: 16130726 # Func_class: L Replication, recombination and repair # Function: Exonuclease V gamma subunit # Organism: Escherichia coli K12 # 1    1122       1    1122    1122    2226  100.0  0
MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI
DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD
KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG
QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF
TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL
ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR
SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP
FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA
ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA
QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL
PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN
ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL
ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL
TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF
WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR
FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ
PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL
SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM
VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS
>gi|223713536|gb|ACDM01000062.1| GENE   165    170380  -    173268   2697    962 aa, chain + ## HITS:1  COG:ptr KEGG:ns NR:ns ## COG: ptr COG1025 # Protein_GI_number: 16130725 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Secreted/periplasmic Zn-dependent peptidases, insulinase-like # Organism: Escherichia coli K12 # 1     962       1     962     962    1854  100.0  0
MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSD
PQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA
STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMR
MAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKP
LPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNS
AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDK
GLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI
RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDK
ISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSR
YFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANN
GLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMP
AQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDV
QKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLG
QIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAE
AKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLL
TPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEK
NE
>gi|223713536|gb|ACDM01000062.1| GENE   166    173261  -    176803   2893   1180 aa, chain + ## HITS:1  COG:recB KEGG:ns NR:ns ## COG: recB COG1074 # Protein_GI_number: 16130724 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Escherichia coli K12 # 1    1180       1    1180    1180    2297   99.0  0
MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA
GGGTPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS
AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL
MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL
NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE
MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY
LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA
>gi|223713536|gb|ACDM01000062.1| GENE   167    176803  -    178629   1313    608 aa, chain + ## HITS:1  COG:recD KEGG:ns NR:ns ## COG: recD COG0507 # Protein_GI_number: 16130723 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Escherichia coli K12 # 1     608       1     608     608    1163  100.0  0
MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN
NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA
RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT
VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ
LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD
LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR
PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL
AALFSSRE
>gi|223713536|gb|ACDM01000062.1| GENE   168    178691  -    180022   1288    443 aa, chain - ## HITS:1  COG:ECs3675_1 KEGG:ns NR:ns ## COG: ECs3675_1 COG0548 # Protein_GI_number: 15832929 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1     291       1     291     291     581  100.0  1e-166
MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLV
VVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTP
LQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSV
TGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDDGDIVSELFPNEAQARVEAQEEK
GDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRR
ATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKI
GEMACVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDL
LPESKKQLYNYQRKSKVLMADLG
>gi|223713536|gb|ACDM01000062.1| GENE   169    180254  -    181507   1214    417 aa, chain + ## HITS:1  COG:ECs3674 KEGG:ns NR:ns ## COG: ECs3674 COG0860 # Protein_GI_number: 15832928 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli O157:H7 # 1     417      31     447     447     783  100.0  0
MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKY
KQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQN
VKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPG
KAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNE
DIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQN
ASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFA
VLKAPDIPSILVETAFISNVEEERKLKTATFQQEVAESILAGIKAYFADGATLARRG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:13:23 2011
 Seq name: gi|223713535|gb|ACDM01000063.1| Escherichia sp. 4_1_40B cont1.63, whole genome shotgun sequence 
 Length of sequence - 60241 bp
 Number of predicted genes - 53, with homology - 53
 Number of transcription units - 27, operones - 16 average op.length -  2.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        21 -        80    4.4 
     1     1 Tu  1     .       +    CDS        206 -      1303   1151  ## COG2821 Membrane-bound lytic murein transglycosylase
                               +    Term      1338 -      1378    4.1 
                               +    Prom      1410 -      1469    7.0 
     2     2 Tu  1     .       +    CDS       1542 -      2348    927  ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
                               +    Term      2356 -      2401   12.8 
                               -    Term      2341 -      2389   11.2 
     3     3 Op  1   7/0.091   -    CDS       2399 -      2842    423  ## COG2166 SufE protein probably involved in Fe-S center assembly
     4     3 Op  2     .       -    CDS       2842 -      4047   1076  ## COG0520 Selenocysteine lyase
                               -    Prom      4175 -      4234    5.2 
                               +    Prom      4160 -      4219    4.3 
     5     4 Tu  1     .       +    CDS       4239 -      4466    359  ## ECIAI1_2919 hypothetical protein
                               +    Prom      4738 -      4797    7.8 
     6     5 Op  1   6/0.091   +    CDS       4817 -      5734    642  ## COG0583 Transcriptional regulator
     7     5 Op  2   5/0.273   +    CDS       5753 -      6148    508  ## COG2363 Uncharacterized small membrane protein
     8     5 Op  3     .       +    CDS       6141 -      7241   1145  ## COG2933 Predicted SAM-dependent methyltransferase
                               -    Term      7233 -      7273    1.2 
     9     6 Tu  1   4/0.455   -    CDS       7285 -      8016    547  ## COG1349 Transcriptional regulators of sugar metabolism
                               -    Term      8029 -      8060    3.5 
    10     7 Op  1   5/0.273   -    CDS       8074 -      8496    411  ## COG4154 Fucose dissimilation pathway protein FucU
    11     7 Op  2   4/0.455   -    CDS       8498 -      9946   1058  ## COG1070 Sugar (pentulose and hexulose) kinases
    12     7 Op  3   3/0.636   -    CDS      10025 -     11800   1823  ## COG2407 L-fucose isomerase and related proteins
    13     7 Op  4     .       -    CDS      11833 -     13149    888  ## COG0738 Fucose permease
                               -    Prom     13265 -     13324    6.7 
                               +    Prom     13575 -     13634    2.4 
    14     8 Op  1   5/0.273   +    CDS      13696 -     14343    628  ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
    15     8 Op  2     .       +    CDS      14371 -     15519   1284  ## COG1454 Alcohol dehydrogenase, class IV
                               +    Term     15651 -     15688    1.0 
                               -    Term     15525 -     15567    8.2 
    16     9 Tu  1     .       -    CDS      15574 -     16329    517  ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI)
                               -    Prom     16350 -     16409    2.7 
    17    10 Op  1  10/0.091   -    CDS      16441 -     17808   1371  ## COG1760 L-serine deaminase
                               -    Term     17826 -     17857    3.9 
    18    10 Op  2   4/0.455   -    CDS      17866 -     19155   1560  ## COG0814 Amino acid permeases
                               -    Prom     19351 -     19410    6.8 
                               -    Term     19666 -     19701    4.0 
    19    11 Tu  1   6/0.091   -    CDS      19712 -     21076   1434  ## COG1611 Predicted Rossmann fold nucleotide-binding protein
                               -    Prom     21112 -     21171    1.7 
    20    12 Tu  1     .       -    CDS      21188 -     22036    633  ## COG0780 Enzyme related to GTP cyclohydrolase I
                               -    Prom     22128 -     22187    3.6 
                               +    Prom     22011 -     22070    3.5 
    21    13 Tu  1     .       +    CDS      22104 -     22649    524  ## ECO103_3336 SecY interacting protein Syd
                               +    Term     22732 -     22786    0.5 
                               +    Prom     23187 -     23246    6.4 
    22    14 Op  1   7/0.091   +    CDS      23271 -     23600    351  ## COG3098 Uncharacterized protein conserved in bacteria
    23    14 Op  2   5/0.273   +    CDS      23600 -     24382    192  ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family
    24    14 Op  3   4/0.455   +    CDS      24400 -     24849    577  ## COG0716 Flavodoxins
                               +    Term     24872 -     24906   -0.1 
                               +    Prom     25089 -     25148    5.7 
    25    15 Op  1   7/0.091   +    CDS      25284 -     26636   1521  ## COG0477 Permeases of the major facilitator superfamily
    26    15 Op  2   5/0.273   +    CDS      26638 -     27978   1545  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
    27    15 Op  3     .       +    CDS      27999 -     29339   1741  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
                               +    Term     29355 -     29386    3.2 
                               -    Term     29336 -     29379    6.1 
    28    16 Tu  1     .       -    CDS      29571 -     32327   2509  ## COG0642 Signal transduction histidine kinase
                               -    Prom     32385 -     32444    3.6 
                               +    Prom     32115 -     32174    1.6 
    29    17 Op  1   8/0.091   +    CDS      32384 -     33685    980  ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
    30    17 Op  2   3/0.636   +    CDS      33733 -     35967   2297  ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases
                               +    Term     35980 -     36013    1.1 
    31    18 Op  1   8/0.091   +    CDS      36045 -     36293    286  ## COG2336 Growth regulator
    32    18 Op  2   3/0.636   +    CDS      36293 -     36628    223  ## COG2337 Growth inhibitor
    33    18 Op  3   5/0.273   +    CDS      36699 -     37490   1028  ## COG1694 Predicted pyrophosphatase
                               +    Term     37504 -     37557    1.1 
                               +    Prom     37610 -     37669    5.3 
    34    19 Op  1   8/0.091   +    CDS      37718 -     39355   1657  ## COG0504 CTP synthase (UTP-ammonia lyase)
                               +    Term     39374 -     39411    9.1 
    35    19 Op  2     .       +    CDS      39443 -     40741   1508  ## COG0148 Enolase
                               +    Term     40766 -     40797    4.1 
                               -    Term     40754 -     40785    4.1 
    36    20 Op  1     .       -    CDS      40801 -     41673     98  ## COG1512 Beta-propeller domains of methanol dehydrogenase type
    37    20 Op  2     .       -    CDS      41687 -     41827    179  ## ECBD_0952 hypothetical protein
                               -    Prom     41888 -     41947    4.2 
                               +    Prom     41681 -     41740    7.4 
    38    21 Tu  1     .       +    CDS      41966 -     42637    220  ## PROTEIN SUPPORTED gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35
                               +    Term     42656 -     42708    5.1 
    39    22 Op  1   6/0.091   -    CDS      44010 -     45488   1417  ## COG1070 Sugar (pentulose and hexulose) kinases
    40    22 Op  2     .       -    CDS      45515 -     46642   1226  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     46693 -     46752    3.4 
                               +    Prom     46894 -     46953    6.6 
    41    23 Op  1   8/0.091   +    CDS      47111 -     47896    180  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
    42    23 Op  2   5/0.273   +    CDS      47966 -     49420   1434  ## COG0277 FAD/FMN-containing dehydrogenases
                               +    Term     49428 -     49470    8.0 
    43    24 Op  1   3/0.636   +    CDS      49514 -     50851   1119  ## COG0477 Permeases of the major facilitator superfamily
    44    24 Op  2  29/0.000   +    CDS      50829 -     51608    721  ## COG2086 Electron transfer flavoprotein, beta subunit
    45    24 Op  3     .       +    CDS      51605 -     52465    711  ## COG2025 Electron transfer flavoprotein, alpha subunit
                               +    Term     52676 -     52708    0.3 
                               -    Term     52568 -     52604   -0.8 
    46    25 Op  1   2/0.818   -    CDS      52613 -     53188    564  ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
    47    25 Op  2  12/0.000   -    CDS      53205 -     53465    214  ## COG2440 Ferredoxin-like protein
    48    25 Op  3   1/1.000   -    CDS      53456 -     54727    735  ## COG0644 Dehydrogenases (flavoproteins)
    49    25 Op  4     .       -    CDS      54805 -     55167    417  ## COG0720 6-pyruvoyl-tetrahydropterin synthase
                               -    Prom     55260 -     55319    3.4 
                               +    Prom     55264 -     55323    6.2 
    50    26 Op  1  11/0.000   +    CDS      55486 -     57285   1767  ## COG0369 Sulfite reductase, alpha subunit (flavoprotein)
    51    26 Op  2  11/0.000   +    CDS      57285 -     58997   1878  ## COG0155 Sulfite reductase, beta subunit (hemoprotein)
    52    26 Op  3     .       +    CDS      59071 -     59805    855  ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
                               +    Term     59826 -     59863    5.3 
                               +    Prom     59835 -     59894    3.9 
    53    27 Tu  1     .       +    CDS      60070 -     60222    134  ## G2583_3410 small toxic membrane polypeptide
Predicted protein(s)
>gi|223713535|gb|ACDM01000063.1| GENE     1       206  -      1303   1151    365 aa, chain + ## HITS:1  COG:ECs3673 KEGG:ns NR:ns ## COG: ECs3673 COG2821 # Protein_GI_number: 15832927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase # Organism: Escherichia coli O157:H7 # 1     365       1     365     365     740  100.0  0
MKGRWVKYLLMGTVVAMLAACSSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFA
EQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTG
YYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSLMDNFIMD
VQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSE
AEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDN
NGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPGAG
NVFSG
>gi|223713535|gb|ACDM01000063.1| GENE     2      1542  -      2348    927    268 aa, chain + ## HITS:1  COG:ygdL KEGG:ns NR:ns ## COG: ygdL COG1179 # Protein_GI_number: 16130719 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Escherichia coli K12 # 1     268       1     268     268     515  100.0  1e-146
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLI
DMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSV
GYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAK
LRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGA
ATMVTATFGFVAVSHALKKMMAKAARQG
>gi|223713535|gb|ACDM01000063.1| GENE     3      2399  -      2842    423    147 aa, chain - ## HITS:1  COG:ECs3671 KEGG:ns NR:ns ## COG: ECs3671 COG2166 # Protein_GI_number: 15832925 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Escherichia coli O157:H7 # 1     147       1     147     147     275  100.0  2e-74
MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAG
CENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELG
LRAQLSASRSQGLNALSEAIIAATKQV
>gi|223713535|gb|ACDM01000063.1| GENE     4      2842  -      4047   1076    401 aa, chain - ## HITS:1  COG:csdA KEGG:ns NR:ns ## COG: csdA COG0520 # Protein_GI_number: 16130717 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli K12 # 1     401       1     401     401     791  100.0  0
MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQR
LTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHH
ANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLA
RAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLE
AMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESW
SRSLATLAEDALAKRPGFRSFRCQDSSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQ
PLLAELGVTGTLRASFAPYNTKSDVDALVNAVDRALELLVD
>gi|223713535|gb|ACDM01000063.1| GENE     5      4239  -      4466    359     75 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_2919 NR:ns ## KEGG: ECIAI1_2919 # Name: ygdI # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      75       1      75      75     129  100.0  3e-29
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQ
QINRTDVKEMVELDQ
>gi|223713535|gb|ACDM01000063.1| GENE     6      4817  -      5734    642    305 aa, chain + ## HITS:1  COG:ECs3668 KEGG:ns NR:ns ## COG: ECs3668 COG0583 # Protein_GI_number: 15832922 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     604  100.0  1e-173
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL
LLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAY
PGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPL
KTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALAN
NVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR
FRYEQ
>gi|223713535|gb|ACDM01000063.1| GENE     7      5753  -      6148    508    131 aa, chain + ## HITS:1  COG:ECs3667 KEGG:ns NR:ns ## COG: ECs3667 COG2363 # Protein_GI_number: 15832921 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Escherichia coli O157:H7 # 1     131       1     131     131     204  100.0  3e-53
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA
IRLKRKGVSHE
>gi|223713535|gb|ACDM01000063.1| GENE     8      6141  -      7241   1145    366 aa, chain + ## HITS:1  COG:ECs3666 KEGG:ns NR:ns ## COG: ECs3666 COG2933 # Protein_GI_number: 15832920 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Escherichia coli O157:H7 # 1     366       1     366     366     780  100.0  0
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELP
FSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFC
RKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKF
PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVD
NGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRE
TIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVG
GRRDER
>gi|223713535|gb|ACDM01000063.1| GENE     9      7285  -      8016    547    243 aa, chain - ## HITS:1  COG:fucR KEGG:ns NR:ns ## COG: fucR COG1349 # Protein_GI_number: 16130712 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     243       1     243     243     471  100.0  1e-133
MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILRNHGRAKYIHR
QNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVF
TNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSG
ALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSL
VTA
>gi|223713535|gb|ACDM01000063.1| GENE    10      8074  -      8496    411    140 aa, chain - ## HITS:1  COG:ECs3664 KEGG:ns NR:ns ## COG: ECs3664 COG4154 # Protein_GI_number: 15832918 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose dissimilation pathway protein FucU # Organism: Escherichia coli O157:H7 # 1     140       1     140     140     268  100.0  2e-72
MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL
FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI
VITGERAKYGNILLKKGVTP
>gi|223713535|gb|ACDM01000063.1| GENE    11      8498  -      9946   1058    482 aa, chain - ## HITS:1  COG:fucK KEGG:ns NR:ns ## COG: fucK COG1070 # Protein_GI_number: 16130710 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     482       1     482     482     980  100.0  0
MLSGYIAGAIMKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENNTWHQWS
LDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISWKCPRTAAV
MDNIERLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERAHAWLFISSLINHRLTG
EFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIGTLQNSAAAMLGL
PVGIPVISAGHDTQFALFGAGAEQNEPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELD
SQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAPGADGVKMQCDLLSCQN
AGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKASELLLVGGGSRNTLWNQI
KANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEARAQIHYQYRYFYPQTEPEFIE
EV
>gi|223713535|gb|ACDM01000063.1| GENE    12     10025  -     11800   1823    591 aa, chain - ## HITS:1  COG:fucI KEGG:ns NR:ns ## COG: fucI COG2407 # Protein_GI_number: 16130709 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Escherichia coli K12 # 1     591       1     591     591    1222  100.0  0
MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDT
CIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVY
LAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSL
GGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY
GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQ
GQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGTAQVFA
DVRTYWSPEAIERVTGHKLDGLAEHGIIHLINSGSAALDGSCKQRDSEGNPTMKPHWEIS
QQEADACLAATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMTRVNIIKGLGPVLQIAEGWS
VELPKDVHDILNKRTNSTWPTTWFAPRLTGKGPFTDVYSVMANWGANHGVLTIGHVGADF
ITLASMLRIPVCMHNVEETKVYRPSAWAAHGMDIEGQDYRACQNYGPLYKR
>gi|223713535|gb|ACDM01000063.1| GENE    13     11833  -     13149    888    438 aa, chain - ## HITS:1  COG:fucP KEGG:ns NR:ns ## COG: fucP COG0738 # Protein_GI_number: 16130708 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Escherichia coli K12 # 1     438       1     438     438     807   99.0  0
MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTN
FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF
LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN
VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS
DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY
LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMVLCLISAFAGGHVGLIALTLCSAF
MSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL
CFAVIFIFARFRSQTATN
>gi|223713535|gb|ACDM01000063.1| GENE    14     13696  -     14343    628    215 aa, chain + ## HITS:1  COG:fucA KEGG:ns NR:ns ## COG: fucA COG0235 # Protein_GI_number: 16130707 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     215       1     215     215     431  100.0  1e-121
MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDG
NGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGG
NSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLAQL
YLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE
>gi|223713535|gb|ACDM01000063.1| GENE    15     14371  -     15519   1284    382 aa, chain + ## HITS:1  COG:ECs3659 KEGG:ns NR:ns ## COG: ECs3659 COG1454 # Protein_GI_number: 15832913 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1     382       2     383     383     745  100.0  0
MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLA
WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRS
LEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADM
MDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE
EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYR
DIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDV
CTGGNPREATLEDIVELYHTAW
>gi|223713535|gb|ACDM01000063.1| GENE    16     15574  -     16329    517    251 aa, chain - ## HITS:1  COG:exo KEGG:ns NR:ns ## COG: exo COG0258 # Protein_GI_number: 16130705 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Escherichia coli K12 # 1     251      31     281     281     519   99.0  1e-147
MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRH
QRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQ
ATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVP
GVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHI
DGNLQQLRLVR
>gi|223713535|gb|ACDM01000063.1| GENE    17     16441  -     17808   1371    455 aa, chain - ## HITS:1  COG:sdaB KEGG:ns NR:ns ## COG: sdaB COG1760 # Protein_GI_number: 16130704 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli K12 # 1     455       1     455     455     912  100.0  0
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGH
HTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNL
SLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKH
CQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRA
AALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
DKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
SPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVC
LDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
>gi|223713535|gb|ACDM01000063.1| GENE    18     17866  -     19155   1560    429 aa, chain - ## HITS:1  COG:ECs3656 KEGG:ns NR:ns ## COG: ECs3656 COG0814 # Protein_GI_number: 15832910 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1     429       1     429     429     733  100.0  0
METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILA
FPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLITLLYFFAIYPILLVYSVAI
TNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVGVLMLLA
LYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYG
DMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPV
IAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTT
WIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVVMGLIAI
SAIFYSLFS
>gi|223713535|gb|ACDM01000063.1| GENE    19     19712  -     21076   1434    454 aa, chain - ## HITS:1  COG:ECs3655 KEGG:ns NR:ns ## COG: ECs3655 COG1611 # Protein_GI_number: 15832909 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Escherichia coli O157:H7 # 1     454       1     454     454     931  100.0  0
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
FDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNL
NLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELN
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLD
EFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQ
MPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDK
EIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
>gi|223713535|gb|ACDM01000063.1| GENE    20     21188  -     22036    633    282 aa, chain - ## HITS:1  COG:yqcD_2 KEGG:ns NR:ns ## COG: yqcD_2 COG0780 # Protein_GI_number: 16130701 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Escherichia coli K12 # 138     282       1     145     145     308  100.0  1e-83
MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGLKADNLPFHGTDIWTLY
ELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFNNWDEVRQTLERDLS
TCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNYEFTTDYLENATCGEKVVEET
LVSHLLKSNCLITHQPDWGSLQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDL
LRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPSTTRLVRQ
>gi|223713535|gb|ACDM01000063.1| GENE    21     22104  -     22649    524    181 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3336 NR:ns ## KEGG: ECO103_3336 # Name: syd # Def: SecY interacting protein Syd # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     181       1     181     181     367  100.0  1e-101
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQ
NVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHL
VTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL
L
>gi|223713535|gb|ACDM01000063.1| GENE    22     23271  -     23600    351    109 aa, chain + ## HITS:1  COG:yqcC KEGG:ns NR:ns ## COG: yqcC COG3098 # Protein_GI_number: 16130699 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     109       1     109     109     176  100.0  9e-45
MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMH
DLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS
>gi|223713535|gb|ACDM01000063.1| GENE    23     23600  -     24382    192    260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 3     219      82     276     287 78  27 8e-14
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV
LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK
GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK
HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
PENERVEFSAPSGQDGEISS
>gi|223713535|gb|ACDM01000063.1| GENE    24     24400  -     24849    577    149 aa, chain + ## HITS:1  COG:ECs3650 KEGG:ns NR:ns ## COG: ECs3650 COG0716 # Protein_GI_number: 15832904 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1     149       1     149     149     293  100.0  9e-80
MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTG
QGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVG
EMLLIDASENPEPETESNPWVEQWGTLLS
>gi|223713535|gb|ACDM01000063.1| GENE    25     25284  -     26636   1521    450 aa, chain + ## HITS:1  COG:ygcZ KEGG:ns NR:ns ## COG: ygcZ COG0477 # Protein_GI_number: 16130696 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     450       1     450     450     819  100.0  0
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYV
FSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTL
RFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWS
HVFFFMGGLGIVISFIWLKVIHEPNQHPGVNKKELEYIAAGGALINMDQQNTKVKVPFSV
KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVC
GFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAF
FGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIY
VGVHALIAVLSYLVLVGDIKRIELKPVAGQ
>gi|223713535|gb|ACDM01000063.1| GENE    26     26638  -     27978   1545    446 aa, chain + ## HITS:1  COG:ygcY KEGG:ns NR:ns ## COG: ygcY COG4948 # Protein_GI_number: 16130695 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1     446       1     446     446     907  100.0  0
MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGDVI
YQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALL
DLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQK
AMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWL
LDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHA
VMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGN
PTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGA
RNDAGPMQYLIPGWTFDRKRPVFGRH
>gi|223713535|gb|ACDM01000063.1| GENE    27     27999  -     29339   1741    446 aa, chain + ## HITS:1  COG:ECs3647 KEGG:ns NR:ns ## COG: ECs3647 COG4948 # Protein_GI_number: 15832901 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli O157:H7 # 1     446       1     446     446     931  100.0  0
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK
IRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAM
LDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHE
EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW
SLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGH
TLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPG
KITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLG
ARDDAMGMQYLIPGWTFDNKRPCMVR
>gi|223713535|gb|ACDM01000063.1| GENE    28     29571  -     32327   2509    918 aa, chain - ## HITS:1  COG:ECs3646_1 KEGG:ns NR:ns ## COG: ECs3646_1 COG0642 # Protein_GI_number: 15832900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1     531       1     531     531    1033  100.0  0
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGM
SLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQL
TVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFIS
SVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGI
NSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANM
SHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLI
LESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNA
IKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHG
GTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLA
YVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLA
KAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPV
TDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQ
MPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL
LLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEV
RNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELL
ELLDEMDNVAREASKILG
>gi|223713535|gb|ACDM01000063.1| GENE    29     32384  -     33685    980    433 aa, chain + ## HITS:1  COG:ygcA KEGG:ns NR:ns ## COG: ygcA COG2265 # Protein_GI_number: 16130692 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1     433       1     433     433     877  100.0  0
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ
YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI
ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL
GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE
TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV
LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT
GHLESMVLFSRVK
>gi|223713535|gb|ACDM01000063.1| GENE    30     33733  -     35967   2297    744 aa, chain + ## HITS:1  COG:ECs3644 KEGG:ns NR:ns ## COG: ECs3644 COG0317 # Protein_GI_number: 15832898 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Escherichia coli O157:H7 # 1     744       1     744     744    1509  100.0  0
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGV
EMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLK
ATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTN
IYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEM
KAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEG
AAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPA
GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNL
GYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVD
ELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGES
YSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ
VLGRVLGKLNQVPDVIDARRLHGS
>gi|223713535|gb|ACDM01000063.1| GENE    31     36045  -     36293    286     82 aa, chain + ## HITS:1  COG:ECs3643 KEGG:ns NR:ns ## COG: ECs3643 COG2336 # Protein_GI_number: 15832897 # Func_class: T Signal transduction mechanisms # Function: Growth regulator # Organism: Escherichia coli O157:H7 # 1      82       1      82      82     148  100.0  2e-36
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVN
DITPENLHENIDWGEPKDKEVW
>gi|223713535|gb|ACDM01000063.1| GENE    32     36293  -     36628    223    111 aa, chain + ## HITS:1  COG:ECs3642 KEGG:ns NR:ns ## COG: ECs3642 COG2337 # Protein_GI_number: 15832896 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Escherichia coli O157:H7 # 1     111       1     111     111     230  100.0  4e-61
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPF
EVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>gi|223713535|gb|ACDM01000063.1| GENE    33     36699  -     37490   1028    263 aa, chain + ## HITS:1  COG:ECs3641 KEGG:ns NR:ns ## COG: ECs3641 COG1694 # Protein_GI_number: 15832895 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Escherichia coli O157:H7 # 1     263       1     263     263     478  100.0  1e-135
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELG
DLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKT
EERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEA
RQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLE
MTGVDLETMEEVWQQVKRQEIDL
>gi|223713535|gb|ACDM01000063.1| GENE    34     37718  -     39355   1657    545 aa, chain + ## HITS:1  COG:ECs3640 KEGG:ns NR:ns ## COG: ECs3640 COG0504 # Protein_GI_number: 15832894 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Escherichia coli O157:H7 # 1     545       1     545     545    1101  100.0  0
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEV
FVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHIT
NAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYM
AASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKD
VDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIE
LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEG
MITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWR
DENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQ
IEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQ
KRQAK
>gi|223713535|gb|ACDM01000063.1| GENE    35     39443  -     40741   1508    432 aa, chain + ## HITS:1  COG:ECs3639 KEGG:ns NR:ns ## COG: ECs3639 COG0148 # Protein_GI_number: 15832893 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Escherichia coli O157:H7 # 1     432       1     432     432     760  100.0  0
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFL
GKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAK
AAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVK
EAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKD
ITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDG
FAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAK
DAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKA
PYNGRKEIKGQA
>gi|223713535|gb|ACDM01000063.1| GENE    36     40801  -     41673     98    290 aa, chain - ## HITS:1  COG:ygcG KEGG:ns NR:ns ## COG: ygcG COG1512 # Protein_GI_number: 16130685 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Escherichia coli K12 # 1     262      24     285     313     489  100.0  1e-138
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIA
VLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDA
LAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAI
FWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIF
MVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>gi|223713535|gb|ACDM01000063.1| GENE    37     41687  -     41827    179     46 aa, chain - ## HITS:1  COG:no KEGG:ECBD_0952 NR:ns ## KEGG: ECBD_0952 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      46       1      46      46      67  100.0  2e-10
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>gi|223713535|gb|ACDM01000063.1| GENE    38     41966  -     42637    220    223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] # 5     222      20     224     225 89  30 4e-17
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK
TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS
GTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTD
DKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>gi|223713535|gb|ACDM01000063.1| GENE    39     44010  -     45488   1417    492 aa, chain - ## HITS:1  COG:ygcE KEGG:ns NR:ns ## COG: ygcE COG1070 # Protein_GI_number: 16130683 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     492       1     492     492    1033  100.0  0
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFA
GHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVA
YVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMP
GTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGK
ALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLL
NKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNN
YDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGL
GLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGEL
GNVDSIQSWSNA
>gi|223713535|gb|ACDM01000063.1| GENE    40     45515  -     46642   1226    375 aa, chain - ## HITS:1  COG:yqcE KEGG:ns NR:ns ## COG: yqcE COG0477 # Protein_GI_number: 16130682 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     375      51     425     425     656  100.0  0
MSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAI
TTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSL
KTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVI
FGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPT
RVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSY
IMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQ
KIRTADSAPAMASSK
>gi|223713535|gb|ACDM01000063.1| GENE    41     47111  -     47896    180    261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 16     256       1     238     242 73  26 2e-12
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEM
IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP
MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY
CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
SPASNYVNGHLLVVDGGYLVR
>gi|223713535|gb|ACDM01000063.1| GENE    42     47966  -     49420   1434    484 aa, chain + ## HITS:1  COG:ECs3629 KEGG:ns NR:ns ## COG: ECs3629 COG0277 # Protein_GI_number: 15832883 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli O157:H7 # 1     484       1     484     484    1009   99.0  0
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST
EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA
QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA
VLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEG
IAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH
EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP
LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY
PIEK
>gi|223713535|gb|ACDM01000063.1| GENE    43     49514  -     50851   1119    445 aa, chain + ## HITS:1  COG:ygcS KEGG:ns NR:ns ## COG: ygcS COG0477 # Protein_GI_number: 16130678 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     445      25     469     469     744   99.0  0
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIG
GSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHFIGLRILIGIG
LGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLAS
AALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTL
FSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLG
LVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPA
ESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLW
APETKALPLVAAGNVGGANEHSVSV
>gi|223713535|gb|ACDM01000063.1| GENE    44     50829  -     51608    721    259 aa, chain + ## HITS:1  COG:ygcR KEGG:ns NR:ns ## COG: ygcR COG2086 # Protein_GI_number: 16130677 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli K12 # 1     259       3     261     261     466  100.0  1e-131
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTP
MSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLI
ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAV
IAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
VAEKAQKLWQDYLRQRMQP
>gi|223713535|gb|ACDM01000063.1| GENE    45     51605  -     52465    711    286 aa, chain + ## HITS:1  COG:ygcQ KEGG:ns NR:ns ## COG: ygcQ COG2025 # Protein_GI_number: 16130676 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1     286      12     297     297     538  100.0  1e-153
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVV
LFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLS
LARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEA
DNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>gi|223713535|gb|ACDM01000063.1| GENE    46     52613  -     53188    564    191 aa, chain - ## HITS:1  COG:ygcP KEGG:ns NR:ns ## COG: ygcP COG1954 # Protein_GI_number: 16130675 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Escherichia coli K12 # 1     191       1     191     191     377  100.0  1e-105
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIH
VDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNID
KQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTN
TGVWTLAKKLL
>gi|223713535|gb|ACDM01000063.1| GENE    47     53205  -     53465    214     86 aa, chain - ## HITS:1  COG:ygcO KEGG:ns NR:ns ## COG: ygcO COG2440 # Protein_GI_number: 16130674 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli K12 # 1      86      13      98      98     177  100.0  6e-45
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTC
RLLCDESTLQQWRYPPSGFGITYRFG
>gi|223713535|gb|ACDM01000063.1| GENE    48     53456  -     54727    735    423 aa, chain - ## HITS:1  COG:ygcN KEGG:ns NR:ns ## COG: ygcN COG0644 # Protein_GI_number: 16130673 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1     423      11     433     433     832   99.0  0
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQ
FHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECI
PGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVARPAGEAMALGIK
EVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
SRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALR
SCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQH
VPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSL
RCL
>gi|223713535|gb|ACDM01000063.1| GENE    49     54805  -     55167    417    120 aa, chain - ## HITS:1  COG:ECs3620 KEGG:ns NR:ns ## COG: ECs3620 COG0720 # Protein_GI_number: 15832874 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Escherichia coli O157:H7 # 1     120       2     121     121     251  100.0  2e-67
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAA
FKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>gi|223713535|gb|ACDM01000063.1| GENE    50     55486  -     57285   1767    599 aa, chain + ## HITS:1  COG:cysJ KEGG:ns NR:ns ## COG: cysJ COG0369 # Protein_GI_number: 16130671 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Escherichia coli K12 # 1     599       1     599     599    1155   99.0  0
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE
MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG
EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL
LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVAS
LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDE
PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI
VDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGG
ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP
GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW
RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>gi|223713535|gb|ACDM01000063.1| GENE    51     57285  -     58997   1878    570 aa, chain + ## HITS:1  COG:ECs3618 KEGG:ns NR:ns ## COG: ECs3618 COG0155 # Protein_GI_number: 15832872 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Escherichia coli O157:H7 # 1     570       1     570     570    1183   99.0  0
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQ
DDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTF
QFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEH
LLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAI
AENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRT
DRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTL
FIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGL
MNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCP
NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAK
EREAGEGFGDFTVRAGIIRPVLDPARDLWD
>gi|223713535|gb|ACDM01000063.1| GENE    52     59071  -     59805    855    244 aa, chain + ## HITS:1  COG:cysH KEGG:ns NR:ns ## COG: cysH COG0175 # Protein_GI_number: 16130669 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli K12 # 1     244       1     244     244     491   99.0  1e-139
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAV
SLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKL
WEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVL
PIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECG
LHEG
>gi|223713535|gb|ACDM01000063.1| GENE    53     60070  -     60222    134     50 aa, chain + ## HITS:1  COG:no KEGG:G2583_3410 NR:ns ## KEGG: G2583_3410 # Name: small # Def: small toxic membrane polypeptide # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      50      46      95      95      91   98.0  1e-17
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:13:53 2011
 Seq name: gi|223713534|gb|ACDM01000064.1| Escherichia sp. 4_1_40B cont1.64, whole genome shotgun sequence 
 Length of sequence - 59650 bp
 Number of predicted genes - 59, with homology - 59
 Number of transcription units - 21, operones - 11 average op.length -  4.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        436 -      1473    543  ## COG2234 Predicted aminopeptidases
                               -    Prom      1507 -      1566    3.9 
                               +    Prom      1488 -      1547    4.2 
     2     2 Op  1  18/0.000   +    CDS       1725 -      2633   1076  ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
     3     2 Op  2   7/0.000   +    CDS       2635 -      4062   1662  ## COG2895 GTPases - Sulfate adenylate transferase subunit 1
     4     2 Op  3     .       +    CDS       4062 -      4667    567  ## COG0529 Adenylylsulfate kinase and related kinases
     5     2 Op  4     .       +    CDS       4717 -      5040    497  ## EcSMS35_2875 hypothetical protein
                               +    Prom      5049 -      5108    3.4 
     6     3 Op  1  11/0.000   +    CDS       5234 -      5545    255  ## COG2919 Septum formation initiator
     7     3 Op  2  19/0.000   +    CDS       5564 -      6274    315  ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15
     8     3 Op  3   8/0.000   +    CDS       6274 -      6753    834  ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
     9     3 Op  4   8/0.000   +    CDS       6750 -      7799   1071  ## COG0585 Uncharacterized conserved protein
    10     3 Op  5  13/0.000   +    CDS       7780 -      8541    671  ## COG0496 Predicted acid phosphatase
    11     3 Op  6  11/0.000   +    CDS       8535 -      9161    541  ## COG2518 Protein-L-isoaspartate carboxylmethyltransferase
                               +    Term      9213 -      9271   -0.7 
                               +    Prom      9212 -      9271    2.1 
    12     3 Op  7   8/0.000   +    CDS       9301 -     10440    692  ## COG0739 Membrane proteins related to metalloendopeptidases
    13     3 Op  8     .       +    CDS      10503 -     11495   1099  ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
                               +    Term     11514 -     11549    6.5 
                               -    Term     11545 -     11576    3.4 
    14     4 Op  1   1/0.900   -    CDS      11589 -     12953   1198  ## COG2610 H+/gluconate symporter and related permeases
    15     4 Op  2   4/0.400   -    CDS      13042 -     13818    730  ## COG3622 Hydroxypyruvate isomerase
    16     4 Op  3   6/0.000   -    CDS      13823 -     14461    480  ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
    17     4 Op  4   5/0.000   -    CDS      14458 -     15720   1041  ## COG3395 Uncharacterized protein conserved in bacteria
    18     4 Op  5     .       -    CDS      15717 -     16625    912  ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
                               -    Prom     16707 -     16766    4.9 
                               +    Prom     16611 -     16670    5.8 
    19     5 Tu  1     .       +    CDS      16821 -     17588    584  ## COG1349 Transcriptional regulators of sugar metabolism
                               +    Term     17610 -     17652    4.5 
                               -    Term     17578 -     17626   -0.9 
    20     6 Tu  1     .       -    CDS      17639 -     18295    403  ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
                               -    Prom     18317 -     18376    8.2 
    21     7 Tu  1     .       -    CDS      18401 -     20962   3121  ## COG0249 Mismatch repair ATPase (MutS family)
                               +    Prom     21155 -     21214    7.4 
    22     8 Tu  1     .       +    CDS      21249 -     21602    335  ## B21_02547 hypothetical protein
                               +    Term     21605 -     21642    7.8 
                               -    Term     21591 -     21630    7.4 
    23     9 Op  1   3/0.500   -    CDS      21639 -     23717   2314  ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
                               -    Term     23723 -     23751    3.0 
    24     9 Op  2   4/0.400   -    CDS      23791 -     24801   1175  ## COG0309 Hydrogenase maturation factor
    25     9 Op  3  13/0.000   -    CDS      24798 -     25919   1034  ## COG0409 Hydrogenase maturation factor
    26     9 Op  4   8/0.000   -    CDS      25919 -     26191    341  ## COG0298 Hydrogenase maturation factor
    27     9 Op  5  11/0.000   -    CDS      26182 -     27054    838  ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase
    28     9 Op  6     .       -    CDS      27058 -     27408    175  ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)
                               -    Prom     27550 -     27609    3.9 
                               +    Prom     27509 -     27568    4.6 
    29    10 Tu  1     .       +    CDS      27620 -     28081    404  ## ECO103_3263 formate hydrogenlyase regulatory protein HycA
                               +    Term     28130 -     28180   10.1 
    30    11 Op  1   4/0.400   +    CDS      28206 -     28817    322  ## COG1142 Fe-S-cluster-containing hydrogenase components 2
    31    11 Op  2  10/0.000   +    CDS      28814 -     30640   2109  ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
    32    11 Op  3   7/0.000   +    CDS      30643 -     31566   1387  ## COG0650 Formate hydrogenlyase subunit 4
    33    11 Op  4   5/0.000   +    CDS      31584 -     33293   2302  ## COG3261 Ni,Fe-hydrogenase III large subunit
    34    11 Op  5   6/0.000   +    CDS      33303 -     33845    538  ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
    35    11 Op  6     .       +    CDS      33845 -     34612    896  ## COG3260 Ni,Fe-hydrogenase III small subunit
    36    11 Op  7     .       +    CDS      34609 -     35019    471  ## B21_02533 hypothetical protein
    37    11 Op  8     .       +    CDS      35012 -     35482    640  ## COG0680 Ni,Fe-hydrogenase maturation factor
                               +    Term     35554 -     35591    3.5 
                               -    Term     35540 -     35578    5.1 
    38    12 Op  1   8/0.000   -    CDS      35641 -     37065   1540  ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase
    39    12 Op  2     .       -    CDS      37074 -     38531   1790  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               -    Prom     38781 -     38840    2.8 
                               +    Prom     38621 -     38680    5.9 
    40    13 Tu  1     .       +    CDS      38791 -     39801    927  ## COG1609 Transcriptional regulators
                               +    Term     39816 -     39855    3.0 
                               +    Prom     39853 -     39912    4.5 
    41    14 Op  1     .       +    CDS      39950 -     40477    461  ## COG1142 Fe-S-cluster-containing hydrogenase components 2
    42    14 Op  2     .       +    CDS      40630 -     42882   1717  ## COG0068 Hydrogenase maturation factor
                               +    Term     42957 -     43001    4.1 
    43    15 Op  1   5/0.000   -    CDS      43010 -     44143    945  ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases
    44    15 Op  2     .       -    CDS      44140 -     45579   1299  ## COG0426 Uncharacterized flavoproteins
                               -    Prom     45670 -     45729    6.5 
                               +    Prom     45627 -     45686    7.4 
    45    16 Tu  1     .       +    CDS      45766 -     47280   1356  ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
                               +    Term     47306 -     47344    2.0 
    46    17 Op  1     .       -    CDS      47277 -     48242   1178  ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation
    47    17 Op  2   4/0.400   -    CDS      48235 -     49008    782  ## COG1349 Transcriptional regulators of sugar metabolism
    48    17 Op  3   5/0.000   -    CDS      49075 -     49434    324  ## COG4578 Glucitol operon activator
                               -    Prom     49471 -     49530    2.3 
    49    17 Op  4   5/0.000   -    CDS      49539 -     50318    856  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
    50    17 Op  5   6/0.000   -    CDS      50322 -     50693    275  ## COG3731 Phosphotransferase system sorbitol-specific component IIA
    51    17 Op  6   6/0.000   -    CDS      50704 -     51663   1061  ## COG3732 Phosphotransferase system sorbitol-specific component IIBC
    52    17 Op  7     .       -    CDS      51660 -     52223    671  ## COG3730 Phosphotransferase system sorbitol-specific component IIC
                               -    Prom     52347 -     52406    6.0 
                               +    Prom     52286 -     52345    4.8 
    53    18 Tu  1     .       +    CDS      52479 -     53564   1055  ## COG2951 Membrane-bound lytic murein transglycosylase B
                               +    Prom     53582 -     53641    2.6 
    54    19 Op  1  12/0.000   +    CDS      53709 -     54206    301  ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase
    55    19 Op  2  14/0.000   +    CDS      54286 -     55347   1509  ## COG0468 RecA/RadA recombinase
                               +    Term     55365 -     55403    1.0 
    56    19 Op  3     .       +    CDS      55416 -     55916    562  ## COG2137 Uncharacterized protein conserved in bacteria
                               +    Term     55973 -     56026   12.0 
    57    20 Tu  1     .       -    CDS      55957 -     56139    143  ## ECSP_3645 hypothetical protein
                               -    Prom     56295 -     56354    1.9 
    58    21 Op  1   8/0.000   +    CDS      56044 -     58674   3071  ## COG0013 Alanyl-tRNA synthetase
                               +    Prom     58722 -     58781    4.1 
    59    21 Op  2     .       +    CDS      58909 -     59094    204  ## PROTEIN SUPPORTED gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1
                               +   TRNA      59410 -     59502   72.5  # Ser GCT 0 0
                               +   TRNA      59506 -     59582   87.2  # Arg ACG 0 0
Predicted protein(s)
>gi|223713534|gb|ACDM01000064.1| GENE     1       436  -      1473    543    345 aa, chain - ## HITS:1  COG:ECs3607 KEGG:ns NR:ns ## COG: ECs3607 COG2234 # Protein_GI_number: 15832861 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Escherichia coli O157:H7 # 1     345       1     345     345     696   99.0  0
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADY
IRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDT
YAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKL
GAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHG
IAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPA
GNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>gi|223713534|gb|ACDM01000064.1| GENE     2      1725  -      2633   1076    302 aa, chain + ## HITS:1  COG:cysD KEGG:ns NR:ns ## COG: cysD COG0175 # Protein_GI_number: 16130659 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli K12 # 1     302       1     302     302     626  100.0  1e-179
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPL
LHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLK
QALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGES
IRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIK
KRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQG
YF
>gi|223713534|gb|ACDM01000064.1| GENE     3      2635  -      4062   1662    475 aa, chain + ## HITS:1  COG:cysN KEGG:ns NR:ns ## COG: cysN COG2895 # Protein_GI_number: 16130658 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Escherichia coli K12 # 1     475       1     475     475     943   99.0  0
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLS
SLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQY
TRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTF
TRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRV
VDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDRE
EAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIA
GKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIF
IDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>gi|223713534|gb|ACDM01000064.1| GENE     4      4062  -      4667    567    201 aa, chain + ## HITS:1  COG:ECs3604 KEGG:ns NR:ns ## COG: ECs3604 COG0529 # Protein_GI_number: 15832858 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Escherichia coli O157:H7 # 1     201       1     201     201     395   99.0  1e-110
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTY
LLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRE
RVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRYFTGIDSVYEAPESAEIHLNGEQ
LVTNLVQQLLDLLRQNDIIRS
>gi|223713534|gb|ACDM01000064.1| GENE     5      4717  -      5040    497    107 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_2875 NR:ns ## KEGG: EcSMS35_2875 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     107       1     107     107     176  100.0  2e-43
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPF
FLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>gi|223713534|gb|ACDM01000064.1| GENE     6      5234  -      5545    255    103 aa, chain + ## HITS:1  COG:ECs3602 KEGG:ns NR:ns ## COG: ECs3602 COG2919 # Protein_GI_number: 15832856 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Escherichia coli O157:H7 # 16     103      16     103     103     164  100.0  4e-41
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDL
NGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>gi|223713534|gb|ACDM01000064.1| GENE     7      5564  -      6274    315    236 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 10     227       6     223     234 125  37 4e-28
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISP
GDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL
LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTR
ALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>gi|223713534|gb|ACDM01000064.1| GENE     8      6274  -      6753    834    159 aa, chain + ## HITS:1  COG:ECs3600 KEGG:ns NR:ns ## COG: ECs3600 COG0245 # Protein_GI_number: 15832854 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Escherichia coli O157:H7 # 1     159       1     159     159     288  100.0  3e-78
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL
FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL
GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>gi|223713534|gb|ACDM01000064.1| GENE     9      6750  -      7799   1071    349 aa, chain + ## HITS:1  COG:ygbO KEGG:ns NR:ns ## COG: ygbO COG0585 # Protein_GI_number: 16130652 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     349       1     349     349     692   99.0  0
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD
ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK
LRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQ
TNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE
LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA
MLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>gi|223713534|gb|ACDM01000064.1| GENE    10      7780  -      8541    671    253 aa, chain + ## HITS:1  COG:ECs3598 KEGG:ns NR:ns ## COG: ECs3598 COG0496 # Protein_GI_number: 15832852 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Escherichia coli O157:H7 # 1     253       1     253     253     505  100.0  1e-143
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGD
IAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPA
LAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRH
PADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVV
SDWLNSVGVGTQW
>gi|223713534|gb|ACDM01000064.1| GENE    11      8535  -      9161    541    208 aa, chain + ## HITS:1  COG:ECs3597 KEGG:ns NR:ns ## COG: ECs3597 COG2518 # Protein_GI_number: 15832851 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-L-isoaspartate carboxylmethyltransferase # Organism: Escherichia coli O157:H7 # 1     208       1     208     208     397  100.0  1e-111
MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQ
PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL
DLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLK
RVRRRGGEFIIDTVEAVRFVPLVKGELA
>gi|223713534|gb|ACDM01000064.1| GENE    12      9301  -     10440    692    379 aa, chain + ## HITS:1  COG:ECs3596 KEGG:ns NR:ns ## COG: ECs3596 COG0739 # Protein_GI_number: 15832850 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli O157:H7 # 1     379       1     379     379     553   99.0  1e-157
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMG
TTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSG
STYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAIT
QADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPT
ASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRV
VYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLH
FEIRYKGKSVNPLRYLPQR
>gi|223713534|gb|ACDM01000064.1| GENE    13     10503  -     11495   1099    330 aa, chain + ## HITS:1  COG:ECs3595 KEGG:ns NR:ns ## COG: ECs3595 COG0568 # Protein_GI_number: 15832849 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1     330       1     330     330     576  100.0  1e-164
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQL
YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI
EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR
TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE
RVRQIQVEGLRRLREILQTQGLNIEALFRE
>gi|223713534|gb|ACDM01000064.1| GENE    14     11589  -     12953   1198    454 aa, chain - ## HITS:1  COG:ygbN KEGG:ns NR:ns ## COG: ygbN COG2610 # Protein_GI_number: 16130647 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1     454       1     454     454     687   99.0  0
MSTITLLCIALTGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGG
VLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDV
GFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTI
IGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALV
TSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSL
QHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISL
ALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKY
LGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
>gi|223713534|gb|ACDM01000064.1| GENE    15     13042  -     13818    730    258 aa, chain - ## HITS:1  COG:ygbM KEGG:ns NR:ns ## COG: ygbM COG3622 # Protein_GI_number: 16130646 # Func_class: G Carbohydrate transport and metabolism # Function: Hydroxypyruvate isomerase # Organism: Escherichia coli K12 # 1     258       1     258     258     528   99.0  1e-150
MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFN
TAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRA
VFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTF
HAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCE
YKPRGLTEEGLGWFDAWR
>gi|223713534|gb|ACDM01000064.1| GENE    16     13823  -     14461    480    212 aa, chain - ## HITS:1  COG:ygbL KEGG:ns NR:ns ## COG: ygbL COG0235 # Protein_GI_number: 16130645 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     212       1     212     212     432  100.0  1e-121
MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQR
LSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIR
PFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFLLANHGPVVCGESLQEAANN
MEELEETAKLIFILGDRPIRYLTAGEIAELRS
>gi|223713534|gb|ACDM01000064.1| GENE    17     14458  -     15720   1041    420 aa, chain - ## HITS:1  COG:ygbK KEGG:ns NR:ns ## COG: ygbK COG3395 # Protein_GI_number: 16130644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     385       1     385     388     741   99.0  0
MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAIDALVISLKTRSCPVVEA
TQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDALMDALDTPFTVFSPALPVN
GRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEAQSTGRCGVVSAHVFEQGVDA
VRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPLVTGGSGLAIGLARQWAQENGNQ
ARKAGRPLAGRGVVLSGSCSQMTNRQVAHYRQIAPAREVDVARCLSIETLAAYAHELAEW
VLGQESVLAPLVFATASTDALAAIQQQYGAQKASQAVETLFSQLAARLAAEGVTRFIVAG
GETSGVVTQSLGIKGFHIGPTISPGVPWVNALDKPVSLALKSGNFGDDAFFSRAQREFLS
>gi|223713534|gb|ACDM01000064.1| GENE    18     15717  -     16625    912    302 aa, chain - ## HITS:1  COG:ygbJ KEGG:ns NR:ns ## COG: ygbJ COG2084 # Protein_GI_number: 16130643 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1     302       1     302     302     493   99.0  1e-139
MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACATLKEAGACGVSDNAATF
AEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDL
EMLDAPVSGGAVKAANGEMTIMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKII
HQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSA
VDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGA
KS
>gi|223713534|gb|ACDM01000064.1| GENE    19     16821  -     17588    584    255 aa, chain + ## HITS:1  COG:ygbI KEGG:ns NR:ns ## COG: ygbI COG1349 # Protein_GI_number: 16130642 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     255      11     265     265     464   99.0  1e-130
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPG
RVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV
TNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRG
ISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
ALVKQDLSLLVAKNE
>gi|223713534|gb|ACDM01000064.1| GENE    20     17639  -     18295    403    218 aa, chain - ## HITS:1  COG:pphB KEGG:ns NR:ns ## COG: pphB COG0639 # Protein_GI_number: 16130641 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1     218       1     218     218     441   99.0  1e-124
MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPEIDLLISVGDNIDRGPESL
DVLRLLNQPWFTSVKGNHEAMALEAFETGDGNMWLASGGDWFFDLNDSEQQEAIDLLLKF
HHLPHIIEITNDNIKYAIAHADYPGSEYLFGKEIAESELLWPVDRVQKSLNGELQQINGA
DYFIFGHMMFDNIQTFANQIYIDTGSPNSGRLSFYKIK
>gi|223713534|gb|ACDM01000064.1| GENE    21     18401  -     20962   3121    853 aa, chain - ## HITS:1  COG:mutS KEGG:ns NR:ns ## COG: mutS COG0249 # Protein_GI_number: 16130640 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Escherichia coli K12 # 1     853       1     853     853    1616  100.0  0
MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGA
SAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTIS
DEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLY
AEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCL
LQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVT
PMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTA
RPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVR
DGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRG
QSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLE
ALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANP
LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAA
DDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK
ALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAG
VPKEVIKRARQKLRELESISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPR
QALEWIYRLKSLV
>gi|223713534|gb|ACDM01000064.1| GENE    22     21249  -     21602    335    117 aa, chain + ## HITS:1  COG:no KEGG:B21_02547 NR:ns ## KEGG: B21_02547 # Name: ygbA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     117       1     117     117     199  100.0  2e-50
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQC
PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
>gi|223713534|gb|ACDM01000064.1| GENE    23     21639  -     23717   2314    692 aa, chain - ## HITS:1  COG:fhlA KEGG:ns NR:ns ## COG: fhlA COG3604 # Protein_GI_number: 16130638 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 1     692       1     692     692    1377  100.0  0
MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS
YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY
CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL
CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST
HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL
CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL
VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR
AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD
EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY
RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE
LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV
AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI
>gi|223713534|gb|ACDM01000064.1| GENE    24     23791  -     24801   1175    336 aa, chain - ## HITS:1  COG:hypE KEGG:ns NR:ns ## COG: hypE COG0309 # Protein_GI_number: 16130637 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 15     336       1     322     322     610  100.0  1e-174
MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSY
VIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKAVVTSMAETA
RAAGIAIVTGDTKVVQRGAVDKLFINTAGMGAIPANIHWGAQTLTAGDVLLVSGTLGDHG
ATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGC
GIELSEAALPVKPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDA
ALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC
>gi|223713534|gb|ACDM01000064.1| GENE    25     24798  -     25919   1034    373 aa, chain - ## HITS:1  COG:hypD KEGG:ns NR:ns ## COG: hypD COG0409 # Protein_GI_number: 16130636 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 1     373       1     373     373     779  100.0  0
MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN
VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR
IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP
TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV
QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ
RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC
AAWYQYRQQESEA
>gi|223713534|gb|ACDM01000064.1| GENE    26     25919  -     26191    341     90 aa, chain - ## HITS:1  COG:ECs3584 KEGG:ns NR:ns ## COG: ECs3584 COG0298 # Protein_GI_number: 15832838 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1      90       1      90      90     174  100.0  3e-44
MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVIN
EAEARDTLDALQNMFDVEPDVGALLYGEEK
>gi|223713534|gb|ACDM01000064.1| GENE    27     26182  -     27054    838    290 aa, chain - ## HITS:1  COG:hypB KEGG:ns NR:ns ## COG: hypB COG0378 # Protein_GI_number: 16130634 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Escherichia coli K12 # 1     290       1     290     290     597  100.0  1e-171
MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTPSQTEEGDLHY
GHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTL
LTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL
PLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKV
DLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA
>gi|223713534|gb|ACDM01000064.1| GENE    28     27058  -     27408    175    116 aa, chain - ## HITS:1  COG:ECs3582 KEGG:ns NR:ns ## COG: ECs3582 COG0375 # Protein_GI_number: 15832836 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Escherichia coli O157:H7 # 1     116       1     116     116     202  100.0  1e-52
MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFDLVCRGSVAEGC
KLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVADDGLQIRRIEIDQE
>gi|223713534|gb|ACDM01000064.1| GENE    29     27620  -     28081    404    153 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3263 NR:ns ## KEGG: ECO103_3263 # Name: hycA # Def: formate hydrogenlyase regulatory protein HycA # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     153       1     153     153     309  100.0  2e-83
MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE
HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL
EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA
>gi|223713534|gb|ACDM01000064.1| GENE    30     28206  -     28817    322    203 aa, chain + ## HITS:1  COG:hycB KEGG:ns NR:ns ## COG: hycB COG1142 # Protein_GI_number: 16130631 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1     203       1     203     203     360  100.0  1e-99
MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCA
VVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAP
PAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKALHLVDNTDIARVSKRKR
ELTFNTDFGDLTLFQQAQSGEAK
>gi|223713534|gb|ACDM01000064.1| GENE    31     28814  -     30640   2109    608 aa, chain + ## HITS:1  COG:hycC KEGG:ns NR:ns ## COG: hycC COG0651 # Protein_GI_number: 16130630 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1     608       1     608     608     997  100.0  0
MSAISLINSGVAWFVAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGV
SGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVC
AVIASNLGMFVVMAEIMALCAVFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLD
LRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKI
GLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYHTLENIGIIL
LGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGG
IGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGL
AITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAICCVIGGVAAPWLL
PMLSAAVPLPLEPANTTVSQPMITLLLIACPLLPFIIMAICKGDRLPSRSRGAAWVCGYD
HEKSMVITAHGFAMPVKQAFAPVLKLRKWLNPVSLVPGWQCEGSALLFRRMALVELAVLV
VIIVSRGA
>gi|223713534|gb|ACDM01000064.1| GENE    32     30643  -     31566   1387    307 aa, chain + ## HITS:1  COG:hycD KEGG:ns NR:ns ## COG: hycD COG0650 # Protein_GI_number: 16130629 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 4 # Organism: Escherichia coli K12 # 1     307       1     307     307     535  100.0  1e-152
MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDAS
GWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGS
PFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALC
ACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFI
PWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLA
FVSLLAA
>gi|223713534|gb|ACDM01000064.1| GENE    33     31584  -     33293   2302    569 aa, chain + ## HITS:1  COG:ECs3577_2 KEGG:ns NR:ns ## COG: ECs3577_2 COG3261 # Protein_GI_number: 15832831 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III large subunit # Organism: Escherichia coli O157:H7 # 158     569       1     412     412     872  100.0  0
MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL
FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD
MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN
VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV
CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG
FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV
DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH
SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD
DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV
VDVRKKKSKVVPYKELERYSIERKNSPLK
>gi|223713534|gb|ACDM01000064.1| GENE    34     33303  -     33845    538    180 aa, chain + ## HITS:1  COG:hycF KEGG:ns NR:ns ## COG: hycF COG1143 # Protein_GI_number: 16130627 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli K12 # 1     180       1     180     180     348  100.0  4e-96
MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETD
LATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVC
NRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKRQKCLVPSDRIELTRHMKEAI
>gi|223713534|gb|ACDM01000064.1| GENE    35     33845  -     34612    896    255 aa, chain + ## HITS:1  COG:hycG KEGG:ns NR:ns ## COG: hycG COG3260 # Protein_GI_number: 16130626 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III small subunit # Organism: Escherichia coli K12 # 1     255       1     255     255     530  100.0  1e-151
MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
IVSHLNHVVEEARIR
>gi|223713534|gb|ACDM01000064.1| GENE    36     34609  -     35019    471    136 aa, chain + ## HITS:1  COG:no KEGG:B21_02533 NR:ns ## KEGG: B21_02533 # Name: hycH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     136       1     136     136     270  100.0  1e-71
MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI
ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD
IHQENAIYLMVRRLRD
>gi|223713534|gb|ACDM01000064.1| GENE    37     35012  -     35482    640    156 aa, chain + ## HITS:1  COG:ECs3573 KEGG:ns NR:ns ## COG: ECs3573 COG0680 # Protein_GI_number: 15832827 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     305  100.0  2e-83
MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLI
VDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGF
YYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE
>gi|223713534|gb|ACDM01000064.1| GENE    38     35641  -     37065   1540    474 aa, chain - ## HITS:1  COG:ascB KEGG:ns NR:ns ## COG: ascB COG2723 # Protein_GI_number: 16130623 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1     474       1     474     474    1002  100.0  0
MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEF
YPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEE
CKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYARTCFEAFDGLVKYWLTFNE
INIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQVGCMLAGG
NFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILK
NTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMM
YDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWG
CIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE
>gi|223713534|gb|ACDM01000064.1| GENE    39     37074  -     38531   1790    485 aa, chain - ## HITS:1  COG:ECs3571_2 KEGG:ns NR:ns ## COG: ECs3571_2 COG1263 # Protein_GI_number: 15832825 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 91     485       2     396     396     645   98.0  0
MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSD
NQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPA
IIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMSLA
IAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDS
ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGAL
WPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQT
ALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFT
SVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAQARKYQSVQPTVAK
EVSLN
>gi|223713534|gb|ACDM01000064.1| GENE    40     38791  -     39801    927    336 aa, chain + ## HITS:1  COG:ascG KEGG:ns NR:ns ## COG: ascG COG1609 # Protein_GI_number: 16130621 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     336       2     337     337     664  100.0  0
MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQ
TLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDA
IMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ
EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAK
FSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQ
EIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAPSR
>gi|223713534|gb|ACDM01000064.1| GENE    41     39950  -     40477    461    175 aa, chain + ## HITS:1  COG:ECs3569 KEGG:ns NR:ns ## COG: ECs3569 COG1142 # Protein_GI_number: 15832823 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli O157:H7 # 1     175       1     175     175     302  100.0  2e-82
MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQ
CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLN
VRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQLSAEKRRRTALMF
>gi|223713534|gb|ACDM01000064.1| GENE    42     40630  -     42882   1717    750 aa, chain + ## HITS:1  COG:hypF KEGG:ns NR:ns ## COG: hypF COG0068 # Protein_GI_number: 16130619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 1     750       1     750     750    1453   99.0  0
MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPETFLVQ
LYQHCPPLARIDSVEREPFIWSQLPTEFTIRQSTGGTMNTQIVPDAATCPACLAEMNTPG
ERRYRYPFINCTHCGPRFTIIRAMPYDRLFTVMAAFPLCPACDKEYRDPLDRRFHAQPVA
CPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLR
ARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVM
LPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDIVQRMD
DSVVRESGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQAVLSQHLG
DLSDDGIQMQWREALRLMQNIYDFTPQYVVHDAHPGYVSSQWAREMNLPTQTVLHHHAHA
AACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECEHLGGLPAVALPGGD
LAAKQPWRNLLAQCLRFVPEWQNYSETASVQQQNWSVLARAIERGINAPLASSCGRFFDA
VAAALGCAPATLSYEGEAACALEALAASCHGVTHPVTMPRVDNQLDLATFWQQWLNWQAP
VNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFP
QSLPAGDGGLSLGQGVIAAARWLAGEVQNG
>gi|223713534|gb|ACDM01000064.1| GENE    43     43010  -     44143    945    377 aa, chain - ## HITS:1  COG:ygbD KEGG:ns NR:ns ## COG: ygbD COG0446 # Protein_GI_number: 16130618 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     377       1     377     377     718   98.0  0
MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSIDEYNKPDLSHVISQGQRADDLT
RQTAGEFAEQFNLRLFPHTWVTDIDAEAHVVKSQNNQWQYDKLVLATGASAFVPPVPGRE
LMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL
MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGILATLDRQRSIEVDAVIAATGLRPE
TALARRAGLTINRGVCVDSYLQTSNTDIYALGDCAEINGQVLPFLQPIQLSAMVLAKNLL
GNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLRWQINTERQGMVARGVDDADQLRAFVV
SEDRMKEAFGLLKTLPM
>gi|223713534|gb|ACDM01000064.1| GENE    44     44140  -     45579   1299    479 aa, chain - ## HITS:1  COG:ygaK_1 KEGG:ns NR:ns ## COG: ygaK_1 COG0426 # Protein_GI_number: 16130617 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Escherichia coli K12 # 1     394       1     394     394     828   99.0  0
MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFV
QNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWN
FNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFND
EVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVE
LYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILT
NVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRL
QDAGFEMSLSLKAKWRPDQDALELCREHGREIARQWALAPLPQSTVNTVVKEETSAATTA
DLGPRMQCSVCRWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFDELASEAK
>gi|223713534|gb|ACDM01000064.1| GENE    45     45766  -     47280   1356    504 aa, chain + ## HITS:1  COG:ygaA KEGG:ns NR:ns ## COG: ygaA COG3604 # Protein_GI_number: 16130616 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 1     504      26     529     529     946  100.0  0
MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA
KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA
GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE
AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE
RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA
TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA
ACARMLETDVANLHRLAKRLGLKD
>gi|223713534|gb|ACDM01000064.1| GENE    46     47277  -     48242   1178    321 aa, chain - ## HITS:1  COG:gutQ_1 KEGG:ns NR:ns ## COG: gutQ_1 COG0794 # Protein_GI_number: 16130615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 14     205       1     192     192     363  100.0  1e-100
MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKI
AATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALL
AMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEE
DFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ
QVQGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTLQSQSRAIDAKEILMKRKITAAPVV
DENGKLTGAINLQDFYQAGII
>gi|223713534|gb|ACDM01000064.1| GENE    47     48235  -     49008    782    257 aa, chain - ## HITS:1  COG:srlR KEGG:ns NR:ns ## COG: srlR COG1349 # Protein_GI_number: 16130614 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     257       1     257     257     504  100.0  1e-143
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNK
EESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMT
NSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNA
GVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQ
ALEEKGIDVIITGESNE
>gi|223713534|gb|ACDM01000064.1| GENE    48     49075  -     49434    324    119 aa, chain - ## HITS:1  COG:gutM KEGG:ns NR:ns ## COG: gutM COG4578 # Protein_GI_number: 16130613 # Func_class: K Transcription # Function: Glucitol operon activator # Organism: Escherichia coli K12 # 1     119       1     119     119     231  100.0  2e-61
MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVAIALD
DQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPHDPLSQNALSLALKLKRG
>gi|223713534|gb|ACDM01000064.1| GENE    49     49539  -     50318    856    259 aa, chain - ## HITS:1  COG:srlD KEGG:ns NR:ns ## COG: srlD COG1028 # Protein_GI_number: 16130612 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1     259       1     259     259     493  100.0  1e-139
MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGA
DATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCA
REFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVH
SLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQDVLNMLLFYASP
KASYCTGQSINVTGGQVMF
>gi|223713534|gb|ACDM01000064.1| GENE    50     50322  -     50693    275    123 aa, chain - ## HITS:1  COG:srlB KEGG:ns NR:ns ## COG: srlB COG3731 # Protein_GI_number: 16130611 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Escherichia coli K12 # 1     123       1     123     123     248  100.0  2e-66
MTVIYQTTITRIGASAIDALSDQMLITFREGAPADLEEYCFIHCHGELKGALHPGLQFSL
GQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHVAGPVPDDIAPGSVLKFES
VKE
>gi|223713534|gb|ACDM01000064.1| GENE    51     50704  -     51663   1061    319 aa, chain - ## HITS:1  COG:srlE KEGG:ns NR:ns ## COG: srlE COG3732 # Protein_GI_number: 16130610 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Escherichia coli K12 # 1     319       1     319     319     592   99.0  1e-169
MTHIRIEKGTGGWGGPLELKATPGKKIVYITAGTRPAIVDKLAQLTGWQAIDGFKEGEPA
EAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQYIVEDIYVSGVKEENITVV
GDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSTVAVLFQSGRDTIDTVLKTILPF
MAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLALICSFPLLSPFLGPGAVIAQVI
GVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPSVLVSRF
LTGAPTVLIAWFVSGFIYQ
>gi|223713534|gb|ACDM01000064.1| GENE    52     51660  -     52223    671    187 aa, chain - ## HITS:1  COG:srlA KEGG:ns NR:ns ## COG: srlA COG3730 # Protein_GI_number: 16130609 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Escherichia coli K12 # 1     187       1     187     187     364   99.0  1e-101
MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC
AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPG
ELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV
HLAGATS
>gi|223713534|gb|ACDM01000064.1| GENE    53     52479  -     53564   1055    361 aa, chain + ## HITS:1  COG:mltB KEGG:ns NR:ns ## COG: mltB COG2951 # Protein_GI_number: 16130608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase B # Organism: Escherichia coli K12 # 1     361       1     361     361     714   99.0  0
MFKRRYVTLLPLFVLLAACSSKPKPTETDTTTGTPSGGFLLEPQHNVMQMGGDFANNPNA
QQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKK
FITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALAT
LSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSG
DGHINLWDPVDAIGSVANYFKAHGWVKGDPVAVMANGQAPGLPNGFKTKYSISQLAAAGL
TPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARV
Q
>gi|223713534|gb|ACDM01000064.1| GENE    54     53709  -     54206    301    165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 8     157     748     898     904 120  46 2e-26
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
>gi|223713534|gb|ACDM01000064.1| GENE    55     54286  -     55347   1509    353 aa, chain + ## HITS:1  COG:ECs3556 KEGG:ns NR:ns ## COG: ECs3556 COG0468 # Protein_GI_number: 15832810 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Escherichia coli O157:H7 # 1     353       1     353     353     666  100.0  0
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG
RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP
DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA
GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG
QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
>gi|223713534|gb|ACDM01000064.1| GENE    56     55416  -     55916    562    166 aa, chain + ## HITS:1  COG:oraA KEGG:ns NR:ns ## COG: oraA COG2137 # Protein_GI_number: 16130605 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     166       1     166     166     310  100.0  6e-85
MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVI
AWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCAL
ARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD
>gi|223713534|gb|ACDM01000064.1| GENE    57     55957  -     56139    143     60 aa, chain - ## HITS:1  COG:no KEGG:ECSP_3645 NR:ns ## KEGG: ECSP_3645 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1      60      74     133     133     117  100.0  1e-25
MGYQGAAGNYLMSLTMEKVEKRLTDLSGALAHNYPEIKLTKYRHQLQRVLTAGLVTEKWE
>gi|223713534|gb|ACDM01000064.1| GENE    58     56044  -     58674   3071    876 aa, chain + ## HITS:1  COG:alaS KEGG:ns NR:ns ## COG: alaS COG0013 # Protein_GI_number: 16130604 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     876       1     876     876    1721  100.0  0
MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYS
RATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKW
FALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCG
PCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMG
LERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVM
PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL
KTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKV
DEAGFEAAMEEQRRRAREASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAV
DAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIGHIGKLAAG
SLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSH
NEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGD
FSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHL
LKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSG
VEPKMLRTMVDDLKNQLGSTIIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVG
GKGGGRPDMAQAGGTDAAALPAALASVKGWVSAKLQ
>gi|223713534|gb|ACDM01000064.1| GENE    59     58909  -     59094    204     61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755] # 1      60       1      60      61 83  61 3e-15
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSS
Y
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:14:19 2011
 Seq name: gi|223713533|gb|ACDM01000065.1| Escherichia sp. 4_1_40B cont1.65, whole genome shotgun sequence 
 Length of sequence - 45615 bp
 Number of predicted genes - 47, with homology - 47
 Number of transcription units - 25, operones - 10 average op.length -  3.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +   TRNA         57 -       133   87.2  # Arg ACG 0 0
     1     1 Op  1   6/0.000   +    CDS        414 -       980    562  ## COG0637 Predicted phosphatase/phosphohexomutase
                               +    Prom       983 -      1042    3.6 
     2     1 Op  2   5/0.000   +    CDS       1121 -      1390    211  ## COG1238 Predicted membrane protein
                               +    Prom      1392 -      1451    5.1 
     3     1 Op  3   6/0.000   +    CDS       1477 -      3033   1769  ## COG2918 Gamma-glutamylcysteine synthetase
                               +    Term      3047 -      3078    2.5 
                               +    Prom      3069 -      3128    2.5 
     4     1 Op  4     .       +    CDS       3183 -      3698    592  ## COG1854 LuxS protein involved in autoinducer AI2 synthesis
                               +    Term      3732 -      3763    3.4 
                               -    Term      3720 -      3751    3.4 
     5     2 Op  1  19/0.000   -    CDS       3762 -      5300   1606  ## COG0477 Permeases of the major facilitator superfamily
     6     2 Op  2   7/0.000   -    CDS       5317 -      6489   1174  ## COG1566 Multidrug resistance efflux pump
                               -    Prom      6553 -      6612    1.9 
                               -    Term      6533 -      6568    5.0 
     7     2 Op  3     .       -    CDS       6616 -      7146    552  ## COG1846 Transcriptional regulators
                               -    Prom      7170 -      7229    5.2 
     8     3 Op  1     .       -    CDS       7237 -      7572    379  ## B21_02503 hypothetical protein
     9     3 Op  2   4/0.500   -    CDS       7562 -      8299    565  ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)
                               -    Prom      8319 -      8378    8.4 
    10     4 Tu  1   3/0.750   -    CDS       8423 -      9607   1131  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom      9639 -      9698    4.5 
                               -    Term      9747 -      9788    1.7 
    11     5 Op  1  14/0.000   -    CDS       9799 -     10791   1101  ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components
    12     5 Op  2  16/0.000   -    CDS      10849 -     11913   1267  ## COG4176 ABC-type proline/glycine betaine transport system, permease component
    13     5 Op  3   5/0.000   -    CDS      11906 -     13108   1169  ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component
                               -    Term     13311 -     13347    2.4 
    14     5 Op  4  24/0.000   -    CDS      13462 -     14421    995  ## COG0208 Ribonucleotide reductase, beta subunit
    15     5 Op  5  18/0.000   -    CDS      14431 -     16536   2109  ## COG0209 Ribonucleotide reductase, alpha subunit
    16     5 Op  6  11/0.000   -    CDS      16548 -     16958    256  ## COG1780 Protein involved in ribonucleotide reduction
    17     5 Op  7     .       -    CDS      16955 -     17200    279  ## COG0695 Glutaredoxin and related proteins
                               -    Prom     17383 -     17442    3.9 
                               -    Term     17382 -     17418    5.6 
    18     6 Tu  1     .       -    CDS      17448 -     17777    276  ## COG4575 Uncharacterized conserved protein
                               -    Prom     17803 -     17862    2.4 
                               +    Prom     17782 -     17841    3.4 
    19     7 Tu  1     .       +    CDS      17929 -     18273    384  ## G2583_3317 hypothetical protein
                               -    Term     18265 -     18299    8.3 
    20     8 Tu  1     .       -    CDS      18310 -     18759    397  ## ECSP_3616 predicted inner membrane protein
                               -    Prom     18939 -     18998    5.9 
                               +    Prom     19220 -     19279    5.8 
    21     9 Tu  1     .       +    CDS      19428 -     19832    470  ## COG2916 DNA-binding protein H-NS
                               -    Term     19709 -     19742    1.0 
    22    10 Op  1   7/0.000   -    CDS      19879 -     20403    410  ## COG0607 Rhodanese-related sulfurtransferase
    23    10 Op  2     .       -    CDS      20413 -     20712    321  ## COG0640 Predicted transcriptional regulators
                               -    Prom     20736 -     20795    5.6 
                               +    Prom     20779 -     20838    4.8 
    24    11 Op  1   4/0.500   +    CDS      20895 -     21053    218  ## COG0401 Uncharacterized homolog of Blt101
                               +    Term     21069 -     21100    3.9 
                               +    Prom     21055 -     21114    2.2 
    25    11 Op  2     .       +    CDS      21137 -     21586    530  ## COG1652 Uncharacterized protein containing LysM domain
                               -    Term     21525 -     21558    5.1 
    26    12 Op  1   1/1.000   -    CDS      21587 -     22249    702  ## COG1802 Transcriptional regulators
    27    12 Op  2   4/0.500   -    CDS      22270 -     23670   1461  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               -    Prom     23837 -     23896    2.0 
                               -    Term     23807 -     23850    3.0 
    28    13 Op  1  12/0.000   -    CDS      23908 -     25188   1374  ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases
    29    13 Op  2   3/0.750   -    CDS      25202 -     26650   1769  ## COG1012 NAD-dependent aldehyde dehydrogenases
    30    13 Op  3     .       -    CDS      26673 -     27941   1037  ## COG0579 Predicted dehydrogenase
    31    13 Op  4     .       -    CDS      27961 -     28938   1046  ## JW5427 hypothetical protein
                               -    Prom     29160 -     29219    4.8 
                               -    Term     29223 -     29263    8.5 
    32    14 Op  1   7/0.000   -    CDS      29274 -     29438     85  ## COG0366 Glycosidases
                               -    Prom     29499 -     29558    5.8 
    33    14 Op  2   7/0.000   -    CDS      29685 -     30476     89  ## COG0366 Glycosidases
    34    14 Op  3   7/0.000   -    CDS      30489 -     31175    479  ## COG0366 Glycosidases
    35    14 Op  4     .       -    CDS      31194 -     31526     81  ## COG0366 Glycosidases
                               +   TRNA      32086 -     32161   94.0  # Met CAT 0 0
                               +    Prom     32714 -     32773    9.1 
    36    15 Tu  1     .       +    CDS      32911 -     33393    349  ## JW5424 hypothetical protein
    37    16 Tu  1     .       -    CDS      33426 -     33566     80  ## gi|193071002|ref|ZP_03051930.1| hypothetical protein EcE110019_1782
                               -    Prom     33671 -     33730    5.3 
                               +    Prom     33418 -     33477    1.8 
    38    17 Tu  1     .       +    CDS      33594 -     34283    188  ## ECSP_3600 hypothetical protein
                               +    Term     34406 -     34441    0.4 
    39    18 Tu  1     .       +    CDS      34713 -     34856     81  ## ECIAI39_2840 putative invertase fragment (fragment)
                               +    Prom     34891 -     34950    3.4 
    40    19 Tu  1     .       +    CDS      35195 -     39775   2439  ## COG3468 Type V secretory pathway, adhesin AidA
                               +    Term     39790 -     39818    1.0 
                               +    Prom     40119 -     40178    3.6 
    41    20 Tu  1     .       +    CDS      40224 -     41048    206  ## SARI_00213 hypothetical protein
                               +    Term     41190 -     41234    4.5 
                               +    Prom     41051 -     41110   10.3 
    42    21 Op  1     .       +    CDS      41353 -     41559    144  ## COG3311 Predicted transcriptional regulator
    43    21 Op  2     .       +    CDS      41580 -     41879    169  ## ECIAI1_4502 hypothetical protein
                               +    Term     41928 -     41973    0.0 
                               +    Prom     41898 -     41957    7.5 
    44    22 Tu  1     .       +    CDS      42128 -     42403    190  ## gi|256024835|ref|ZP_05438700.1| hypothetical protein E4_15799
                               +    Term     42425 -     42461    4.1 
    45    23 Tu  1     .       -    CDS      42945 -     43508    436  ## EcE24377A_2924 hypothetical protein
                               -    Prom     43736 -     43795    5.8 
                               +    Prom     44455 -     44514   10.6 
    46    24 Tu  1     .       +    CDS      44548 -     44973    171  ## EcE24377A_2923 hypothetical protein
                               +    Term     45080 -     45115    1.1 
                               -    Term     45048 -     45090    4.0 
    47    25 Tu  1     .       -    CDS      45115 -     45435    151  ## SeSA_A2901 hypothetical protein
Predicted protein(s)
>gi|223713533|gb|ACDM01000065.1| GENE     1       414  -       980    562    188 aa, chain + ## HITS:1  COG:yqaB KEGG:ns NR:ns ## COG: yqaB COG0637 # Protein_GI_number: 16130602 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1     188       1     188     188     372  100.0  1e-103
MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMIALNGSPTWRIAQAIIE
LNQADLDPHALAREKTEAVRSMLLDSVEPLPLVDVVKSWHGRRPMAVGTGSESAIAEALL
AHLGLRHYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPTQCVVFEDADFGIQAARAAGM
DAVDVRLL
>gi|223713533|gb|ACDM01000065.1| GENE     2      1121  -      1390    211     89 aa, chain + ## HITS:1  COG:yqaA KEGG:ns NR:ns ## COG: yqaA COG1238 # Protein_GI_number: 16130601 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1      75      49     123     142     130   96.0  5e-31
MGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWM
RISWGPVIFFCALVKRYAMLQLQQRPFRA
>gi|223713533|gb|ACDM01000065.1| GENE     3      1477  -      3033   1769    518 aa, chain + ## HITS:1  COG:gshA KEGG:ns NR:ns ## COG: gshA COG2918 # Protein_GI_number: 16130600 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Escherichia coli K12 # 1     518       1     518     518    1084  100.0  0
MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD
FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG
TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY
FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG
YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY
APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA
DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL
DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL
EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA
>gi|223713533|gb|ACDM01000065.1| GENE     4      3183  -      3698    592    171 aa, chain + ## HITS:1  COG:luxS KEGG:ns NR:ns ## COG: luxS COG1854 # Protein_GI_number: 16130599 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Escherichia coli K12 # 1     171       1     171     171     351  100.0  4e-97
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLF
AGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQI
PELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI
>gi|223713533|gb|ACDM01000065.1| GENE     5      3762  -      5300   1606    512 aa, chain - ## HITS:1  COG:STM2815 KEGG:ns NR:ns ## COG: STM2815 COG0477 # Protein_GI_number: 16766126 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1     502       1     502     512     907   95.0  0
MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGV
ANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLI
PLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVA
VVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVV
AVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYG
YTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMD
FGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTM
WTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEI
FWMSAGIFLVLLGLVWFAKPPFGAGGGGGGAH
>gi|223713533|gb|ACDM01000065.1| GENE     6      5317  -      6489   1174    390 aa, chain - ## HITS:1  COG:emrA KEGG:ns NR:ns ## COG: emrA COG1566 # Protein_GI_number: 16130597 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     390       1     390     390     689  100.0  0
MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGN
QIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMI
NSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQ
YNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPT
TPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAF
SLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRDGQVLANKVR
STPVAVSTAREISLAPVNKLIDDIVKANAG
>gi|223713533|gb|ACDM01000065.1| GENE     7      6616  -      7146    552    176 aa, chain - ## HITS:1  COG:ECs3546 KEGG:ns NR:ns ## COG: ECs3546 COG1846 # Protein_GI_number: 15832800 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     306  100.0  2e-83
MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMA
LITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEK
GHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAMS
>gi|223713533|gb|ACDM01000065.1| GENE     8      7237  -      7572    379    111 aa, chain - ## HITS:1  COG:no KEGG:B21_02503 NR:ns ## KEGG: B21_02503 # Name: ygaH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     111       1     111     111     176  100.0  2e-43
MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA
PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII
>gi|223713533|gb|ACDM01000065.1| GENE     9      7562  -      8299    565    245 aa, chain - ## HITS:1  COG:ygaZ KEGG:ns NR:ns ## COG: ygaZ COG1296 # Protein_GI_number: 16130594 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Escherichia coli K12 # 1     245       1     245     245     433  100.0  1e-121
MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLGFSPLESVFFSCIIYAG
ASQFVITAMLAAGSSLWIAALTVMAMDVRHVLYGPSLRSRIIQRLQKSKTALWAFGLTDE
VFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGAFSGSGLLQGYPAVEAALGFM
LPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIPVAILAGIVCGCLTALIQAFWQG
APDEL
>gi|223713533|gb|ACDM01000065.1| GENE    10      8423  -      9607   1131    394 aa, chain - ## HITS:1  COG:ECs3543 KEGG:ns NR:ns ## COG: ECs3543 COG0477 # Protein_GI_number: 15832797 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     394       1     394     394     620   99.0  1e-177
MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYA
AGLLFLVPLGDMFERRRLIVSMTLLAACGMLITASSQSLAMMILGTALTGLFSVVAQILV
PLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANLGGWRTVFWVASVLMALMALA
LWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRALLGCLTFANFSILWTSMAFLLAA
PPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKSHHTTTFGLLLLLLSWLAIWFGHTS
VLALIIGILVLDLTVQGVHITNQTVIYRIHPDARNRLTAGYMTSYFIGGAAGSLISASAW
QHGGWAGVCLAGATIALVNLLVWWRGFHRQEAAN
>gi|223713533|gb|ACDM01000065.1| GENE    11      9799  -     10791   1101    330 aa, chain - ## HITS:1  COG:ECs3542 KEGG:ns NR:ns ## COG: ECs3542 COG2113 # Protein_GI_number: 15832796 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Escherichia coli O157:H7 # 1     330       1     330     330     653  100.0  0
MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVN
KPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLID
KKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTV
THNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNA
DTKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASE
GDIQGHVDGWIKAHQQQFDGWVNEALAAQK
>gi|223713533|gb|ACDM01000065.1| GENE    12     10849  -     11913   1267    354 aa, chain - ## HITS:1  COG:proW KEGG:ns NR:ns ## COG: proW COG4176 # Protein_GI_number: 16130592 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Escherichia coli K12 # 1     354       1     354     354     583  100.0  1e-166
MADQNNPWDTTPAADSAAQSADAWGTPTTAPTDGGGADWLTSTPAPNVEHFNILDPFHKT
LIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQI
SGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKII
RPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA
SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR
LDMGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK
>gi|223713533|gb|ACDM01000065.1| GENE    13     11906  -     13108   1169    400 aa, chain - ## HITS:1  COG:proV KEGG:ns NR:ns ## COG: proV COG4175 # Protein_GI_number: 16130591 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Escherichia coli K12 # 1     400       1     400     400     764  100.0  0
MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIM
GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH
MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA
INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN
GEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSAL
KLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALIDAPLAVDAQTPLSELL
SHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDREGVNNG
>gi|223713533|gb|ACDM01000065.1| GENE    14     13462  -     14421    995    319 aa, chain - ## HITS:1  COG:nrdF KEGG:ns NR:ns ## COG: nrdF COG0208 # Protein_GI_number: 16130590 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Escherichia coli K12 # 1     319       1     319     319     637  100.0  0
MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVF
TGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDA
AYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTN
TADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDEL
YAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS
GSSYVMGKAVETEDEDWNF
>gi|223713533|gb|ACDM01000065.1| GENE    15     14431  -     16536   2109    701 aa, chain - ## HITS:1  COG:nrdE KEGG:ns NR:ns ## COG: nrdE COG0209 # Protein_GI_number: 16130589 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Escherichia coli K12 # 1     701      14     714     714    1432   99.0  0
MDYHALNAMLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQRLNWLVNEGYYD
ESVLNRYSRDFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMV
ALTLAQGDETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRA
VNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQG
AGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYD
VERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVN
RANPIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFAR
TVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDF
TNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELF
TRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRK
EGKTGRVYYPAPFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATT
RDINKAQIYAWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL
>gi|223713533|gb|ACDM01000065.1| GENE    16     16548  -     16958    256    136 aa, chain - ## HITS:1  COG:ECs3537 KEGG:ns NR:ns ## COG: ECs3537 COG1780 # Protein_GI_number: 15832791 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Escherichia coli O157:H7 # 1     136       1     136     136     268  100.0  1e-72
MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPR
QVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIEN
VRKGVTEFWQRQPQNA
>gi|223713533|gb|ACDM01000065.1| GENE    17     16955  -     17200    279     81 aa, chain - ## HITS:1  COG:ECs3536 KEGG:ns NR:ns ## COG: ECs3536 COG0695 # Protein_GI_number: 15832790 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli O157:H7 # 1      81       1      81      81     164  100.0  4e-41
MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLS
WSGFRPDMINRLHPAPHAASA
>gi|223713533|gb|ACDM01000065.1| GENE    18     17448  -     17777    276    109 aa, chain - ## HITS:1  COG:ECs3533 KEGG:ns NR:ns ## COG: ECs3533 COG4575 # Protein_GI_number: 15832787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     109       5     113     113     192  100.0  2e-49
MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRAR
MHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS
>gi|223713533|gb|ACDM01000065.1| GENE    19     17929  -     18273    384    114 aa, chain + ## HITS:1  COG:no KEGG:G2583_3317 NR:ns ## KEGG: G2583_3317 # Name: ygaC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     114       1     114     114     221  100.0  8e-57
MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARMGRTALVIHPTLKERSS
TLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVALERYLNGLFGEAS
>gi|223713533|gb|ACDM01000065.1| GENE    20     18310  -     18759    397    149 aa, chain - ## HITS:1  COG:no KEGG:ECSP_3616 NR:ns ## KEGG: ECSP_3616 # Name: ygaW # Def: predicted inner membrane protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1     149       1     149     149     269  100.0  2e-71
MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYSRLVAIPVNILIAWPYG
MYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLVVGADWHQIMAAVSSNIVV
SMLMGAVYGYFLDYCRRLFKVSRYQQVKA
>gi|223713533|gb|ACDM01000065.1| GENE    21     19428  -     19832    470    134 aa, chain + ## HITS:1  COG:ECs3530 KEGG:ns NR:ns ## COG: ECs3530 COG2916 # Protein_GI_number: 15832784 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Escherichia coli O157:H7 # 1     134       1     134     134     213  100.0  1e-55
MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST
WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA
QALAEGKSLDDFLI
>gi|223713533|gb|ACDM01000065.1| GENE    22     19879  -     20403    410    174 aa, chain - ## HITS:1  COG:ygaP KEGG:ns NR:ns ## COG: ygaP COG0607 # Protein_GI_number: 16130582 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1     174       1     174     174     340  100.0  5e-94
MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQI
IFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIA
AGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA
>gi|223713533|gb|ACDM01000065.1| GENE    23     20413  -     20712    321     99 aa, chain - ## HITS:1  COG:ygaV KEGG:ns NR:ns ## COG: ygaV COG0640 # Protein_GI_number: 16130581 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1      99       1      99      99     162  100.0  2e-40
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLA
RMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP
>gi|223713533|gb|ACDM01000065.1| GENE    24     20895  -     21053    218     52 aa, chain + ## HITS:1  COG:ECs3527 KEGG:ns NR:ns ## COG: ECs3527 COG0401 # Protein_GI_number: 15832781 # Func_class: S Function unknown # Function: Uncharacterized homolog of Blt101 # Organism: Escherichia coli O157:H7 # 1      52       1      52      52      77  100.0  6e-15
MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD
>gi|223713533|gb|ACDM01000065.1| GENE    25     21137  -     21586    530    149 aa, chain + ## HITS:1  COG:ygaU KEGG:ns NR:ns ## COG: ygaU COG1652 # Protein_GI_number: 16130579 # Func_class: S Function unknown # Function: Uncharacterized protein containing LysM domain # Organism: Escherichia coli K12 # 1     149       1     149     149     267  100.0  4e-72
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGD
GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL
YNKIFEANKPMLKSPDKIYPGQVLRIPEE
>gi|223713533|gb|ACDM01000065.1| GENE    26     21587  -     22249    702    220 aa, chain - ## HITS:1  COG:ECs3525 KEGG:ns NR:ns ## COG: ECs3525 COG1802 # Protein_GI_number: 15832779 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     220       7     226     226     411  100.0  1e-115
MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVN
QKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGGDEWEADVLAKAHLLSKLEACDAS
EKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKH
DQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMAGN
>gi|223713533|gb|ACDM01000065.1| GENE    27     22270  -     23670   1461    466 aa, chain - ## HITS:1  COG:gabP KEGG:ns NR:ns ## COG: gabP COG1113 # Protein_GI_number: 16130577 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1     466       1     466     466     824  100.0  0
MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVM
IMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSW
VPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPY
AEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNS
VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSC
LNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVF
KFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVV
MLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKTPVHNTR
>gi|223713533|gb|ACDM01000065.1| GENE    28     23908  -     25188   1374    426 aa, chain - ## HITS:1  COG:gabT KEGG:ns NR:ns ## COG: gabT COG0160 # Protein_GI_number: 16130576 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli K12 # 1     426       1     426     426     854  100.0  0
MNSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP
KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK
IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE
DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE
VQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAG
NPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELF
EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC
FDEAKQ
>gi|223713533|gb|ACDM01000065.1| GENE    29     25202  -     26650   1769    482 aa, chain - ## HITS:1  COG:gabD KEGG:ns NR:ns ## COG: gabD COG1012 # Protein_GI_number: 16130575 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     482       1     482     482     954  100.0  0
MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRA
LPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFA
EEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQ
LMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDG
VYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKA
HERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYA
RDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCI
GL
>gi|223713533|gb|ACDM01000065.1| GENE    30     26673  -     27941   1037    422 aa, chain - ## HITS:1  COG:ygaF KEGG:ns NR:ns ## COG: ygaF COG0579 # Protein_GI_number: 16130574 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli K12 # 1     422      23     444     444     859   99.0  0
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGS
LKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLN
ADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNG
VVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRR
VLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDF
LFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAF
NQ
>gi|223713533|gb|ACDM01000065.1| GENE    31     27961  -     28938   1046    325 aa, chain - ## HITS:1  COG:no KEGG:JW5427 NR:ns ## KEGG: JW5427 # Name: ygaT # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     325       1     325     325     639  100.0  0
MNALTAVQNNAVDSGQDYSGFTLTPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYK
SFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAH
LIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDE
QNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPV
MRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPH
PDLRRELMRQRGYFAYASNHYQTHQ
>gi|223713533|gb|ACDM01000065.1| GENE    32     29274  -     29438     85     54 aa, chain - ## HITS:1  COG:ECs3519 KEGG:ns NR:ns ## COG: ECs3519 COG0366 # Protein_GI_number: 15832773 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1      54     282     335     335     103   94.0  1e-22
MGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL
>gi|223713533|gb|ACDM01000065.1| GENE    33     29685  -     30476     89    263 aa, chain - ## HITS:1  COG:b2657 KEGG:ns NR:ns ## COG: b2657 COG0366 # Protein_GI_number: 16130571 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 54     263       1     210     210     419  100.0  1e-117
MIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPK
SDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPK
YHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASK
PGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWD
GQVLKSTTEIKNYDGSTRVGGEA
>gi|223713533|gb|ACDM01000065.1| GENE    34     30489  -     31175    479    228 aa, chain - ## HITS:1  COG:ECs3518 KEGG:ns NR:ns ## COG: ECs3518 COG0366 # Protein_GI_number: 15832772 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1     228     118     345     412     461   98.0  1e-130
MIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQ
QETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEF
ARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDA
KKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY
>gi|223713533|gb|ACDM01000065.1| GENE    35     31194  -     31526     81    110 aa, chain - ## HITS:1  COG:ECs3518 KEGG:ns NR:ns ## COG: ECs3518 COG0366 # Protein_GI_number: 15832772 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1     109       1     109     412     211   94.0  3e-55
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREI
ISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT
>gi|223713533|gb|ACDM01000065.1| GENE    36     32911  -     33393    349    160 aa, chain + ## HITS:1  COG:no KEGG:JW5424 NR:ns ## KEGG: JW5424 # Name: ypjC # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     160       1     160     160     271  100.0  6e-72
MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMM
SECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQV
WENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE
>gi|223713533|gb|ACDM01000065.1| GENE    37     33426  -     33566     80     46 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|193071002|ref|ZP_03051930.1| ## NR: gi|193071002|ref|ZP_03051930.1| hypothetical protein EcE110019_1782 [Escherichia coli E110019] # 1      46       1      46      46      80  100.0  4e-14
MGCSFDSDKDEISSILFSYELRDSIQTFGGVSKITLRVLLGLSKPT
>gi|223713533|gb|ACDM01000065.1| GENE    38     33594  -     34283    188    229 aa, chain + ## HITS:1  COG:no KEGG:ECSP_3600 NR:ns ## KEGG: ECSP_3600 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1     221     229     449     449     405   90.0  1e-112
MNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHN
NIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCF
FSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNK
IKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ
>gi|223713533|gb|ACDM01000065.1| GENE    39     34713  -     34856     81     47 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_2840 NR:ns ## KEGG: ECIAI39_2840 # Name: pinH # Def: putative invertase fragment (fragment) # Organism: E.coli_IAI39 # Pathway: not_defined # 1      47      42      88      88      89   91.0  3e-17
MWHLVVLLEELCERGINFRALAQSIFAQQWGDECCKSKTICDLKVIV
>gi|223713533|gb|ACDM01000065.1| GENE    40     35195  -     39775   2439   1526 aa, chain + ## HITS:1  COG:ypjA KEGG:ns NR:ns ## COG: ypjA COG3468 # Protein_GI_number: 16130562 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1    1526      44    1569    1569    2320   99.0  0
MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETVDGNQKVNERGTTNNTH
IINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTINGGRQSIHDGGISTGTTI
ESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQIVKVQGHADGTTINKSGSQD
VVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVYESRALDTTIEGGTQSLNSKSTA
KNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVSGGTATNVTQHDGAILKTNTNGTTVSGT
NSEGAFSIHNHVADNVLLENGGHLDINAYGSANKTIIKDKGTMSVLTNAKADATRIDNGG
VMDVAGNATNTIINGGTQNINNYGIATGTNINSGTQNIKSGGKADTTIISSGSRQVVEKD
GTAIGSNISAGGSLIVYTGGIAHGVNQETGSALVANTGAGTDIEGYNKLSHFTITGGEAN
YVVLENTGELTVVAKTSAKNTTIDTGGKLIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVE
QQSGGALIASTTSGTLIEGTNSYGDAFYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINA
NGKMDVYGKDVGTVLNSAGTQTIYASATSDKANIKGGKQTVYGLATEANIESGEQIVDGG
STEKTHINGGTQTVQNYGKAINTDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSV
LNDGGTLDVREKGSATGIQQSSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANG
GVLTVESDTSSDKTQVNMGGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVS
ANGEAIKTKINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNL
ATNMLLENGGNLLVLAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQAL
ARAEDLQVAGGTAIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTL
GNGVDTTLADLTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTN
GIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTL
VKTGGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDP
KPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASP
HNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIG
FDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGL
GGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGATLSYN
MRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASFSSTLSG
HLGVGYSHSAGVESPWNAVAGVNWSF
>gi|223713533|gb|ACDM01000065.1| GENE    41     40224  -     41048    206    274 aa, chain + ## HITS:1  COG:no KEGG:SARI_00213 NR:ns ## KEGG: SARI_00213 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1     269       1     269     281     525   98.0  1e-148
MNNWSPEHTKVIKSWFKIDTYRKFEDLSLIQFYHEIWARKLFFKEYREEFESRALAGYFS
KIFSGNPFLIEEGQLGYMTPANKLFQPPHFFLTTLDRLAETSIIAMQRGGFLWHEGDNYS
INAELREESLSDIMPDQFTRTIMFEIDLASGTDEEIAESLKAALPQWRKVKGIDENPLES
VRFGYGTIKKLISYRVIPMLDILVWAAVKKIRVSDDRLSRLLYTDDDEESEMRQSSQIKD
TDRPLALKSCTTDFIRQFHYFMNKNSHLKTNESL
>gi|223713533|gb|ACDM01000065.1| GENE    42     41353  -     41559    144     68 aa, chain + ## HITS:1  COG:ECs3513 KEGG:ns NR:ns ## COG: ECs3513 COG3311 # Protein_GI_number: 15832767 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1      68       1      68      68     102   69.0  2e-22
MKNQATRLIRLPEVLERTGYGKAWIYRLINDGKFPAPVKIGSRAIAFVESEIDSWIQSVI
ETSRNNVA
>gi|223713533|gb|ACDM01000065.1| GENE    43     41580  -     41879    169     99 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_4502 NR:ns ## KEGG: ECIAI1_4502 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      96       6     101     109     147   77.0  2e-34
MTIEEFVNEENHMCNLGQELFFKIFEPESIYNLPNNEFNKEIIYWLSQYLVGNLIQPLDA
ISELNASKQIYVYETWFSLIKCPDEMKLLAKRIIEYLLD
>gi|223713533|gb|ACDM01000065.1| GENE    44     42128  -     42403    190     91 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256024835|ref|ZP_05438700.1| ## NR: gi|256024835|ref|ZP_05438700.1| hypothetical protein E4_15799 [Escherichia sp. 4_1_40B] # 1      91      13     103     103     159  100.0  4e-38
MNNSIIVPEDKDFVCAFATSPNSFYEAIESYRNYVDLVQEIEFEHVFLYLLFSIVVNGST
DITINDEVRMCIEQLVYEKNSIRNNNADKKM
>gi|223713533|gb|ACDM01000065.1| GENE    45     42945  -     43508    436    187 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_2924 NR:ns ## KEGG: EcE24377A_2924 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     187       1     187     187     288   83.0  5e-77
MSITSVVLTKEQKSIIAEALEVMPEDLEEIKIKATSYKKTSFKDDFSMVFKGNMATLARM
DLTPTAFRIVIYLFSAIDYGNIIPDFSQSRTAKELGLNKSNVSRAFKELFGKKILIRDTI
DNQVYLNSNLCVKGIPRRFNEDLMDKFRKSRLETEDFANSFNFYRAWSKTKSVKNSRRRN
PADGIPF
>gi|223713533|gb|ACDM01000065.1| GENE    46     44548  -     44973    171    141 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_2923 NR:ns ## KEGG: EcE24377A_2923 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     141       1     141     141     241   90.0  8e-63
MSAINVLSQEEKFIHVVDKFITHNHNGVNNNVFYKKLYVLFAGYHLKYFYSRAQYRNSCY
HVDNIMQMFMGVVSTLKTPLLRQLANSDTLLHCLNSLVNYISGNLDEAEHIYADLLAQYE
KKRIARSLAYTPPGSVVRKRL
>gi|223713533|gb|ACDM01000065.1| GENE    47     45115  -     45435    151    106 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A2901 NR:ns ## KEGG: SeSA_A2901 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1     106       1     106     106     137   69.0  9e-32
MKTYAFTTLIASIFLLTGCTSEPSEQDIYTAMNKVVEQTNAIVKSIARNDITPDMLRKLK
SVKKHDCEKLSDKSYKCNVTAVVDNEKRTAAVKLVKTDDGWQVVDK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:15:13 2011
 Seq name: gi|223713532|gb|ACDM01000066.1| Escherichia sp. 4_1_40B cont1.66, whole genome shotgun sequence 
 Length of sequence - 39400 bp
 Number of predicted genes - 39, with homology - 39
 Number of transcription units - 23, operones - 12 average op.length -  2.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        286 -       558    154  ## SeSA_A2899 hypothetical protein
                               -    Prom       666 -       725    5.8 
     2     2 Op  1     .       -    CDS        747 -      2006    343  ## EcE24377A_2918 relaxase/mobilization nuclease domain-containing protein
     3     2 Op  2     .       -    CDS       2003 -      2410    203  ## EcE24377A_2917 hypothetical protein
                               -    Prom      2494 -      2553    6.1 
                               -    Term      2498 -      2536    6.5 
     4     3 Op  1     .       -    CDS       2612 -      3565    428  ## SeSA_A2896 hypothetical protein
     5     3 Op  2     .       -    CDS       3580 -      4020    337  ## EcE24377A_2914 hypothetical protein
                               -    Prom      4086 -      4145   10.9 
     6     4 Tu  1     .       -    CDS       4602 -      4838    147  ## PANA_2929 hypothetical protein
                               +    Prom      5599 -      5658    4.1 
     7     5 Op  1     .       +    CDS       5714 -      7819    172  ## Avin_31060 hypothetical protein
     8     5 Op  2     .       +    CDS       7819 -      8724    135  ## COG2357 Uncharacterized protein conserved in bacteria
                               +    Term      8741 -      8786    8.2 
     9     6 Op  1   4/0.500   -    CDS       9777 -     10673    204  ## COG1475 Predicted transcriptional regulators
    10     6 Op  2     .       -    CDS      10670 -     11566    126  ## COG1475 Predicted transcriptional regulators
    11     6 Op  3   1/0.875   -    CDS      11556 -     12014     89  ## COG1961 Site-specific recombinases, DNA invertase Pin homologs
                               -    Prom     12191 -     12250    6.0 
                               -    Term     13342 -     13393    1.6 
    12     7 Tu  1     .       -    CDS      13395 -     14624    332  ## PROTEIN SUPPORTED gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15
                               -    Prom     14682 -     14741    3.6 
    13     8 Tu  1     .       -    CDS      15368 -     15850    495  ## COG0691 tmRNA-binding protein
                               -    Prom     15975 -     16034    5.3 
                               +    Prom     15823 -     15882    2.3 
    14     9 Op  1   9/0.375   +    CDS      16009 -     16458    366  ## COG2867 Oligoketide cyclase/lipid transport protein
    15     9 Op  2     .       +    CDS      16448 -     16738    271  ## COG2914 Uncharacterized protein conserved in bacteria
                               +    Term     16745 -     16789    7.8 
                               -    Term     16731 -     16777    8.2 
    16    10 Tu  1     .       -    CDS      16800 -     17141    356  ## COG2913 Small protein A (tmRNA-binding)
                               -    Prom     17194 -     17253    3.2 
    17    11 Op  1  17/0.000   -    CDS      17290 -     18951   1559  ## COG0497 ATPase involved in DNA repair
                               -    Prom     18976 -     19035    4.7 
    18    11 Op  2     .       -    CDS      19037 -     19915    719  ## COG0061 Predicted sugar kinase
                               -    Prom     20037 -     20096    4.2 
                               +    Prom     19604 -     19663    2.6 
    19    12 Op  1     .       +    CDS      19847 -     20041    179  ## UTI89_C2948 hypothetical protein
    20    12 Op  2     .       +    CDS      20038 -     20631    872  ## COG0576 Molecular chaperone GrpE (heat shock protein)
                               +    Term     20654 -     20693    5.1 
    21    13 Op  1   4/0.500   -    CDS      20686 -     21927   1267  ## COG4536 Putative Mg2+ and Co2+ transporter CorB
    22    13 Op  2     .       -    CDS      21993 -     22784    715  ## COG4137 ABC-type uncharacterized transport system, permease component
                               -    Prom     22815 -     22874    3.9 
                               +    Prom     22835 -     22894    5.2 
    23    14 Op  1  23/0.000   +    CDS      22951 -     24312   1647  ## COG0541 Signal recognition particle GTPase
    24    14 Op  2  12/0.125   +    CDS      24501 -     24809    524  ## PROTEIN SUPPORTED gi|110806723|ref|YP_690243.1| 30S ribosomal protein S16
    25    14 Op  3  30/0.000   +    CDS      24828 -     25376    189  ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19
    26    14 Op  4  33/0.000   +    CDS      25407 -     26174    592  ## COG0336 tRNA-(guanine-N1)-methyltransferase
    27    14 Op  5     .       +    CDS      26216 -     26563    573  ## PROTEIN SUPPORTED gi|15803128|ref|NP_289159.1| 50S ribosomal protein L19
                               +    Term     26588 -     26634    9.6 
    28    15 Tu  1     .       -    CDS      26639 -     27022    257  ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins
    29    16 Op  1     .       -    CDS      27137 -     28360    811  ## COG2199 FOG: GGDEF domain
    30    16 Op  2     .       -    CDS      28353 -     28871    105  ## ECH74115_3842 hypothetical protein
                               -    Prom     28923 -     28982    4.1 
    31    17 Tu  1     .       -    CDS      29021 -     29383    307  ## B21_02455 hypothetical protein
                               -    Prom     29423 -     29482    5.9 
                               +    Prom     29426 -     29485   10.0 
    32    18 Op  1   7/0.375   +    CDS      29596 -     30666   1085  ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
    33    18 Op  2     .       +    CDS      30677 -     31798   1250  ## COG0287 Prephenate dehydrogenase
                               +    Term     31806 -     31845   10.0 
    34    19 Tu  1     .       -    CDS      31841 -     33001    936  ## COG0077 Prephenate dehydratase
                               -    Prom     33166 -     33225    3.5 
                               -    Term     33198 -     33225    1.5 
    35    20 Tu  1     .       -    CDS      33251 -     33592    574  ## PROTEIN SUPPORTED gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA
                               -    Prom     33789 -     33848    4.5 
                               -    Term     33811 -     33842    2.4 
    36    21 Tu  1     .       -    CDS      33863 -     34600    868  ## COG4105 DNA uptake lipoprotein
                               -    Prom     34722 -     34781    4.5 
                               +    Prom     34621 -     34680    4.8 
    37    22 Op  1  11/0.125   +    CDS      34735 -     35715   1148  ## COG0564 Pseudouridylate synthases, 23S RNA-specific
    38    22 Op  2   7/0.375   +    CDS      35712 -     36443    578  ## COG1496 Uncharacterized conserved protein
                               +    Prom     36463 -     36522    4.7 
    39    23 Tu  1     .       +    CDS      36573 -     39146   1845  ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8
                               +    Term     39151 -     39191    6.2 
Predicted protein(s)
>gi|223713532|gb|ACDM01000066.1| GENE     1       286  -       558    154     90 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A2899 NR:ns ## KEGG: SeSA_A2899 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1      90       1      90      90     140   85.0  1e-32
MDNKTISCPFCFTQSPHGVRVCKGCHAKVAYGESPLSVAFLFQFVALALAWLVFSLTGST
PASVITFFASVIILICIIKKKYADRVVFIR
>gi|223713532|gb|ACDM01000066.1| GENE     2       747  -      2006    343    419 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_2918 NR:ns ## KEGG: EcE24377A_2918 # Name: not_defined # Def: relaxase/mobilization nuclease domain-containing protein # Organism: E.coli_E24377A # Pathway: not_defined # 4     419       1     404     404     675   82.0  0
MKGMQKIKRGKQFTGVVIYSLKSGSHHKITPYVIGGNMTGSTAAELISEFEGTRLLRPDV
AKPVWHNSLRLPKGEKLSNRQWAAFADDYMARMGFTDTHLRCYIMHDDPDGQHIHIIASR
INMVGGKLYLGKNENLIGTRIISELERVHGLTETTGVTGSSRQDKRKPSRNELMMAERTA
APCPKSLLQALLDNALTHHPDLLTFVRLLEQEGVTCKPNIATTGKMSGFSFQYQGIAFKA
SQLGKKYGWSSLQALIDFTPEHLSLLKEAQRPIEPTTAPVPVPVPVPVPVPVPVPVPVPV
PSCESEEQAANRETILEKIHQLEEKIRLERQQETVGIIQLRSNLHNTARQIPRQRRLYSW
LVLLVHIVALLRRRGMSLLHATAHPFHQILHLHILTPCHPMTTNTNKEQSFKNNNHPAP
>gi|223713532|gb|ACDM01000066.1| GENE     3      2003  -      2410    203    135 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_2917 NR:ns ## KEGG: EcE24377A_2917 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 9     134       8     133     134     199   84.0  3e-50
MNSDMSNDDDITRVSKRGKFHTDKFPENEIRHHCISVRLNEEELIILDSKRGQYKKGEWL
RMASLNKLPPVLPEINREAWIKLGSLSQDLNYLLSHLDSKSPDSELTRTELFALRRQIKT
LRDHLIPSTFLESDP
>gi|223713532|gb|ACDM01000066.1| GENE     4      2612  -      3565    428    317 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A2896 NR:ns ## KEGG: SeSA_A2896 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1     317       1     315     315     362   59.0  9e-99
MSNYTEDNLFDSKTKKDVQNCIAAGIDINTLNEHGENALFGCDSIGALKAMIEAGIALNH
TDCYGNNALFSRKSPRAVRLLIKSGINVHHKNNKGQSCLHWQRYAIDCAELLINAGIDIH
STDNEGQTLLYDLLDHDVFDYWVNKGCDINHRDYGGKAVLDLPTDNEWWIYDFSINALKR
HVDRIDSTPVLFKHVSTEALPLIALLHEKGRNILIAEHCSFALYVKNMKYFFTSLKKYTD
ISHVQFYNCYHDKHIGIYTGIESVKWFIRNGIRMDDDILRQRSDSDKIFSYIAAREKKDL
LKEMKPEIPRSSVRKRL
>gi|223713532|gb|ACDM01000066.1| GENE     5      3580  -      4020    337    146 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_2914 NR:ns ## KEGG: EcE24377A_2914 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     146       1     146     146     146   59.0  3e-34
MKKQNYSTLTSYLSKTKKNTDLYRLYNPHFSIFCKNSIEDHVFYLNYFSRHMVTERNILT
IFAIHTFFSYSMEKKDTIKAFTRFLKEENHDTFYQSFSFRGCNIIYTNKKGEVKEISWFS
FSRIYDEIIKIKEYEYNNNTWHKTTA
>gi|223713532|gb|ACDM01000066.1| GENE     6      4602  -      4838    147     78 aa, chain - ## HITS:1  COG:no KEGG:PANA_2929 NR:ns ## KEGG: PANA_2929 # Name: not_defined # Def: hypothetical protein # Organism: P.ananatis # Pathway: not_defined # 1      75     225     299     335     121   81.0  8e-27
MEKLISHCIKIKRAGYRPVILTLESKVIAARQLADNVGMSELIAIQAAETFIGNNIEEIA
IYDGDKIRESLARLIHLL
>gi|223713532|gb|ACDM01000066.1| GENE     7      5714  -      7819    172    701 aa, chain + ## HITS:1  COG:no KEGG:Avin_31060 NR:ns ## KEGG: Avin_31060 # Name: not_defined # Def: hypothetical protein # Organism: A.vinelandii # Pathway: not_defined # 4     699       6     703     705     583   46.0  1e-165
MLRKSKLTEIYKRFGFTEENTGNESIAVYSIKTGHYHNADILPLNNEVNVNQTFEEYRQL
GYACQIKKYQSYEEAHKELFNGFFSVDSTKERLIKDYNTFTDSIVKIHSPTATYSYINSK
YYLNGVIGEANVVTEILERIQHRRPILFLIEAAAGFGKTCTAYELLREIIVNNIGKIPLF
SELSRNRQAKIFRYVLLDEIDRSFPLLSSALVRNEIRAGNVPVILDGFDELLHESTNGIE
NNYEKTEPMLETISELLTDSAKVVLTTRRTAIFDGDEFHQWIASHQEDFDVIRIRIHEPQ
IEDWLPGQRLDEISSTGFPLNKLSNPVLLSFLRCIDDTDFNKVISDPTTIVRKYFDSMLE
RERKRQDLLMSIEDQYTILKIIADDMVEGNYTSESREYISLVITEKNQQLLEATRKLYTV
DERPTTDELVNKLASHALLDRSGSENQGIGFVNEFVLGNFVSENIINDKSNEWIGDKRFI
EPAVQSYMPRIDDEKELLWHSLEFALYFMSGNDKILYSHLLIGKVPLDLKNDSVEQLSIS
KLSLGDINIIHDTIFVDCSFFSSIFTCGNYKNVTFVNCSFIDCSFNELSGREDIYFLGCE
CDNDAINKKSVEINSENDHDITDCDIYILEKFCPRGSVSYHKHRPIKGLCSNNNQFQLSE
ILHSLDKLRKDGLLLTPDKRSFLELNMARISEIKAILGRNF
>gi|223713532|gb|ACDM01000066.1| GENE     8      7819  -      8724    135    301 aa, chain + ## HITS:1  COG:DR1631 KEGG:ns NR:ns ## COG: DR1631 COG2357 # Protein_GI_number: 15806636 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 21     186      52     220     394      62   27.0  8e-10
MYNGNELRIIQSLQKDIEDELNRIGLLYRFFSRTKSESSIIKKYEKEPNKYSEDGKKIQD
LFGVRIILYFPDDLFIAQKTLEKLFEIESKTVDETTANLFAATRCNYVFKLPEVLSNDSV
LLKKYSYIDTTFEVQFRTILSEGWHEVEHDLRYKCKEDWVEHNDLSRALNGIYASLETSD
WGIMKLFEDLAYRNYKSSAWSAMLRNKLRLRMDDKLDEKIISIINEKELGKKFYRIDRDR
LLSLMLDYNIDMPINLNNIIYLCNYFFIKSTELQDIAPALIMKKLTDADEKFNKNTILAS
K
>gi|223713532|gb|ACDM01000066.1| GENE     9      9777  -     10673    204    298 aa, chain - ## HITS:1  COG:SMa2147 KEGG:ns NR:ns ## COG: SMa2147 COG1475 # Protein_GI_number: 16263622 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Sinorhizobium meliloti # 2     128      15     142     296      75   30.0  1e-13
MIQIRFGKNFIYLETNKLIPSKELLENVKRSHKYHQIVTSIESLGIIEPIIVFYDKDKDV
TKILDGHLRVEALKDLDIEKAPCILSSIDDAFTPNKQVNHINVVEEHRMIIKSLAKVSIE
KLSAALGISVDAIKDKANVMNGIDPSVIAKLSDKPIPKATFDVLRKMKPIRQIEAVGTMI
NFDNYSKKFAMSILDATPSSMIVNKGKNTPYKKDIKKTILRLEQEMATTSEETKKLQTEY
GSDMLKFVIIQSYINKLLGNSKVLHWFLENEVDYLNELKRISRINSLDDKTLTENSQS
>gi|223713532|gb|ACDM01000066.1| GENE    10     10670  -     11566    126    298 aa, chain - ## HITS:1  COG:AGpA53 KEGG:ns NR:ns ## COG: AGpA53 COG1475 # Protein_GI_number: 16119268 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2     285       5     282     295     184   36.0  2e-46
MLPEKNEFPIIQIEIAKIKFLNPRTRNKVVHEEIKESIKKRGLSKPISVRAIDEDDFKYA
LICGQGRIEALVALGETIIPAIIRDVSEEDAYVMSLVENIARRRPRSNELLQVIKDMKIR
GLSDSEISEITGYSSNWVSSINMLLDKGEHKLLSAVERGNLPLYLAVQFARCETEEAQDI
LTEAYDKKLIKSRDIIKIKYILNQRTVGNKGAKAAGFYYHKPSKRMTAEELIELYENSIA
EHKSVYNNSKFIKTNLLIINEIFNIIMMNKSFQNILEQENLSELPSQILNPVNKEVSK
>gi|223713532|gb|ACDM01000066.1| GENE    11     11556  -     12014     89    152 aa, chain - ## HITS:1  COG:AGpA54 KEGG:ns NR:ns ## COG: AGpA54 COG1961 # Protein_GI_number: 16119269 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1     147     369     515     518     112   34.0  3e-25
MIGYKPEHDYSYLQINEALRSFYSEIIEDFKGEILKSNCHIDEYKYYPMLYINDEFLISV
LVTKCIHMKSGKLRWKVRFDNSQKADITIVIRMNSQNISPLDFYIIPKIENEYSKMCMME
TNNIRLDLYRFDNLDKFLQIITRMKVRELYAA
>gi|223713532|gb|ACDM01000066.1| GENE    12     13395  -     14624    332    409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 31     403      28     388     391 132  28 3e-30
MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK
VSLGTYPHLTLAKARALRDEYLSLLANGIDPQIHNTHKANALKDATEHTFQAVAKKWLDE
KVKTSGISQDHANDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRVI
SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET
RLLIEWQLLTWVRPGEAVRTRWSDIDIETSMWNIPAEFMKMKKPHKVPLSKESLRVLDSM
KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEECGKFRT
DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQKYKVIAA
>gi|223713532|gb|ACDM01000066.1| GENE    13     15368  -     15850    495    160 aa, chain - ## HITS:1  COG:ECs3482 KEGG:ns NR:ns ## COG: ECs3482 COG0691 # Protein_GI_number: 15832736 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Escherichia coli O157:H7 # 1     160       1     160     160     308  100.0  3e-84
MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD
GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN
AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
>gi|223713532|gb|ACDM01000066.1| GENE    14     16009  -     16458    366    149 aa, chain + ## HITS:1  COG:yfjG KEGG:ns NR:ns ## COG: yfjG COG2867 # Protein_GI_number: 16130538 # Func_class: I Lipid transport and metabolism # Function: Oligoketide cyclase/lipid transport protein # Organism: Escherichia coli K12 # 1     149      10     158     158     295  100.0  2e-80
MEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKA
GISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIE
LAFGRVFKELAANMVQAFTVRAKEVYSAR
>gi|223713532|gb|ACDM01000066.1| GENE    15     16448  -     16738    271     96 aa, chain + ## HITS:1  COG:yfjF KEGG:ns NR:ns ## COG: yfjF COG2914 # Protein_GI_number: 16130537 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      96       7     102     102     163   98.0  7e-41
MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTKNKVGIYSRPA
KLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK
>gi|223713532|gb|ACDM01000066.1| GENE    16     16800  -     17141    356    113 aa, chain - ## HITS:1  COG:STM2685 KEGG:ns NR:ns ## COG: STM2685 COG2913 # Protein_GI_number: 16766000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Small protein A (tmRNA-binding) # Organism: Salmonella typhimurium LT2 # 1     111       1     111     112     198   92.0  2e-51
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALG
TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
>gi|223713532|gb|ACDM01000066.1| GENE    17     17290  -     18951   1559    553 aa, chain - ## HITS:1  COG:recN KEGG:ns NR:ns ## COG: recN COG0497 # Protein_GI_number: 16130535 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Escherichia coli K12 # 1     553       1     553     553    1000   99.0  0
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAA
RADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLREL
GQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHHQQLS
QERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFE
LEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEI
ARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFDEHHLGADGADRIEFRVTTNP
GQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVT
RNTLANAKELLAA
>gi|223713532|gb|ACDM01000066.1| GENE    18     19037  -     19915    719    292 aa, chain - ## HITS:1  COG:yfjB KEGG:ns NR:ns ## COG: yfjB COG0061 # Protein_GI_number: 16130534 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Escherichia coli K12 # 1     292       1     292     292     611  100.0  1e-175
MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEI
GQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGH
YISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLI
ISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDL
EISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF
>gi|223713532|gb|ACDM01000066.1| GENE    19     19847  -     20041    179     64 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C2948 NR:ns ## KEGG: UTI89_C2948 # Name: yfjC # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      64      20      83      83     118  100.0  7e-26
MCCQCSGVPWVSHNANTLEMIIHFSEVLVAKIDDNVSASLETLKLIPIISEVSEMNAKKT
RRNS
>gi|223713532|gb|ACDM01000066.1| GENE    20     20038  -     20631    872    197 aa, chain + ## HITS:1  COG:ECs3476 KEGG:ns NR:ns ## COG: ECs3476 COG0576 # Protein_GI_number: 15832730 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Escherichia coli O157:H7 # 1     197       1     197     197     315  100.0  3e-86
MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKIANLEAQLAEAQTRERD
GILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMV
EGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTL
NGRTIRAAMVTVAKAKA
>gi|223713532|gb|ACDM01000066.1| GENE    21     20686  -     21927   1267    413 aa, chain - ## HITS:1  COG:yfjDm KEGG:ns NR:ns ## COG: yfjDm COG4536 # Protein_GI_number: 16132248 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorB # Organism: Escherichia coli K12 # 5     413      12     420     420     771  100.0  0
MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNI
LASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPL
QILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLS
VLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVR
EAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGL
VTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDART
VNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE
>gi|223713532|gb|ACDM01000066.1| GENE    22     21993  -     22784    715    263 aa, chain - ## HITS:1  COG:ECs3474 KEGG:ns NR:ns ## COG: ECs3474 COG4137 # Protein_GI_number: 15832728 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1     263      26     288     288     446  100.0  1e-125
MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSG
QNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEA
TPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHIT
QIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWF
NVAGAVILTLAYFGSRIVQQLIS
>gi|223713532|gb|ACDM01000066.1| GENE    23     22951  -     24312   1647    453 aa, chain + ## HITS:1  COG:ECs3473 KEGG:ns NR:ns ## COG: ECs3473 COG0541 # Protein_GI_number: 15832727 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Escherichia coli O157:H7 # 1     453       1     453     453     803  100.0  0
MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV
GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL
GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK
LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL
PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV
LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI
PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQF
DDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR
>gi|223713532|gb|ACDM01000066.1| GENE    24     24501  -     24809    524    102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110806723|ref|YP_690243.1| 30S ribosomal protein S16 [Shigella flexneri 5 str. 8401] # 1     102       1     102     102 206  100 2e-52
MTPDSVPRWGPVVLFTQEDVMVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFN
PIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA
>gi|223713532|gb|ACDM01000066.1| GENE    25     24828  -     25376    189    182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 11     177       2     160     179 77  29 1e-13
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE
GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP
GF
>gi|223713532|gb|ACDM01000066.1| GENE    26     25407  -     26174    592    255 aa, chain + ## HITS:1  COG:ECs3470 KEGG:ns NR:ns ## COG: ECs3470 COG0336 # Protein_GI_number: 15832724 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Escherichia coli O157:H7 # 1     255       1     255     255     488  100.0  1e-138
MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGM
LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDE
RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPH
YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF
KTEHAQQQHKHDGMA
>gi|223713532|gb|ACDM01000066.1| GENE    27     26216  -     26563    573    115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803128|ref|NP_289159.1| 50S ribosomal protein L19 [Escherichia coli O157:H7 EDL933] # 1     115       1     115     115 225  100 4e-58
MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT
VRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN
>gi|223713532|gb|ACDM01000066.1| GENE    28     26639  -     27022    257    127 aa, chain - ## HITS:1  COG:yfiB KEGG:ns NR:ns ## COG: yfiB COG2885 # Protein_GI_number: 16130526 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli K12 # 1     127      34     160     160     244  100.0  3e-65
MQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTD
NYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRV
AVVITTP
>gi|223713532|gb|ACDM01000066.1| GENE    29     27137  -     28360    811    407 aa, chain - ## HITS:1  COG:yfiN_2 KEGG:ns NR:ns ## COG: yfiN_2 COG2199 # Protein_GI_number: 16130525 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 240     407       1     168     168     333  100.0  3e-91
MDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLTLKQYAQKNLALTAATMT
YSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNILASWHYTRKDPGDTFSNFIS
HWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSLAVLTGCILLASGIAITLTRHL
HNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFHRFALDFNSLLDEMEEWQLRLQAK
NAQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHAT
GDRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDL
HNGHQTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR
>gi|223713532|gb|ACDM01000066.1| GENE    30     28353  -     28871    105    172 aa, chain - ## HITS:1  COG:no KEGG:ECH74115_3842 NR:ns ## KEGG: ECH74115_3842 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     172       1     172     172     329  100.0  2e-89
MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSS
RFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLI
AEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG
>gi|223713532|gb|ACDM01000066.1| GENE    31     29021  -     29383    307    120 aa, chain - ## HITS:1  COG:no KEGG:B21_02455 NR:ns ## KEGG: B21_02455 # Name: yfiL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     120       2     121     121     238  100.0  5e-62
MKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISGSAIKDDDAFSDSQADRG
LYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQLHEVWQKGADENASTIRLN
>gi|223713532|gb|ACDM01000066.1| GENE    32     29596  -     30666   1085    356 aa, chain + ## HITS:1  COG:aroF KEGG:ns NR:ns ## COG: aroF COG0722 # Protein_GI_number: 16130522 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli K12 # 1     356       1     356     356     709  100.0  0
MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCG
PCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDV
EAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGL
SMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKAP
NYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGL
MIESNIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLNGQLTARVA
>gi|223713532|gb|ACDM01000066.1| GENE    33     30677  -     31798   1250    373 aa, chain + ## HITS:1  COG:ECs3463_2 KEGG:ns NR:ns ## COG: ECs3463_2 COG0287 # Protein_GI_number: 15832717 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Escherichia coli O157:H7 # 100     373       1     274     274     555   99.0  1e-158
MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAE
AEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTL
SGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIGKLPPLPKDCILVDLASVKNG
PLQAMLVAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRI
SAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDP
QLYADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSE
SRVLLRQANDNRQ
>gi|223713532|gb|ACDM01000066.1| GENE    34     31841  -     33001    936    386 aa, chain - ## HITS:1  COG:ECs3462_2 KEGG:ns NR:ns ## COG: ECs3462_2 COG0077 # Protein_GI_number: 15832716 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Escherichia coli O157:H7 # 105     386       1     282     282     568  100.0  1e-162
MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLI
TLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARIAFLGPKGSYSHLAA
RQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHTSLSI
VGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSKFLNRYPHWKIEYTESTSAAMEK
VAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLARKAINVSDQVPAKTTL
LMATGQQAGALVEALLVLRNHNLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQKALK
ELGEITRSMKVLGCYPSENVVPVDPT
>gi|223713532|gb|ACDM01000066.1| GENE    35     33251  -     33592    574    113 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA [Escherichia coli O157:H7 EDL933] # 1     113       1     113     113 225  100 3e-58
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV
LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
>gi|223713532|gb|ACDM01000066.1| GENE    36     33863  -     34600    868    245 aa, chain - ## HITS:1  COG:ECs3458 KEGG:ns NR:ns ## COG: ECs3458 COG4105 # Protein_GI_number: 15832712 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Escherichia coli O157:H7 # 1     245       1     245     245     466  100.0  1e-131
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDN
RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD
DSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS
VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT
>gi|223713532|gb|ACDM01000066.1| GENE    37     34735  -     35715   1148    326 aa, chain + ## HITS:1  COG:sfhB KEGG:ns NR:ns ## COG: sfhB COG0564 # Protein_GI_number: 16130515 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Escherichia coli K12 # 1     326       1     326     326     625  100.0  1e-179
MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL
GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL
HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT
AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM
AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP
IPQDMVELIEVMRADFEEHKDEVDWL
>gi|223713532|gb|ACDM01000066.1| GENE    38     35712  -     36443    578    243 aa, chain + ## HITS:1  COG:yfiH KEGG:ns NR:ns ## COG: yfiH COG1496 # Protein_GI_number: 16130514 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     243       1     243     243     508  100.0  1e-144
MSKLIVPQWPQPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNPDHVEENRKRLFAAGNL
PSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNRAGTEV
AAAHAGWRGLCAGVLEETVSCFADNPENILAWLGPAIGPRAFEVGGEVREAFMAVDAKAS
AAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKTTGRMASFI
WLI
>gi|223713532|gb|ACDM01000066.1| GENE    39     36573  -     39146   1845    857 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1     857       1     811     815 715  46 0.0
MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQL
RTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRG
TLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPV
IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL
DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK
PALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH
HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRII
QLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE
QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVL
ARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGS
FLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG
YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLK
RLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVP
GKVIRLEVNEDRIVAVQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:16:22 2011
 Seq name: gi|223713531|gb|ACDM01000067.1| Escherichia sp. 4_1_40B cont1.67, whole genome shotgun sequence 
 Length of sequence - 112543 bp
 Number of predicted genes - 103, with homology - 101
 Number of transcription units - 64, operones - 19 average op.length -  3.1
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         69 -       452    258  ## UTI89_C4570 hypothetical protein
     2     2 Tu  1     .       -    CDS        515 -       958    377  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
                               -    Prom       978 -      1037    3.5 
                               +    Prom       934 -       993    4.4 
     3     3 Tu  1     .       +    CDS       1115 -      2044    928  ## COG1897 Homoserine trans-succinylase
                               +    Term      2090 -      2118    1.0 
                               +    Prom      2130 -      2189    7.2 
     4     4 Op  1   7/0.050   +    CDS       2313 -      3914   1581  ## COG2225 Malate synthase
     5     4 Op  2   5/0.200   +    CDS       3944 -      5248   1528  ## COG2224 Isocitrate lyase
                               +    Term      5471 -      5514    2.1 
                               +    Prom      5266 -      5325    2.5 
     6     5 Tu  1     .       +    CDS       5529 -      7265   1264  ## COG4579 Isocitrate dehydrogenase kinase/phosphatase
     7     6 Tu  1     .       -    CDS       7234 -      8586    366  ## COG0666 FOG: Ankyrin repeat
                               -    Prom      8610 -      8669    2.5 
     8     7 Tu  1     .       -    CDS       9737 -     10561    715  ## COG1414 Transcriptional regulator
                               -    Prom     10721 -     10780    3.7 
                               +    Prom     10557 -     10616    5.3 
     9     8 Tu  1     .       +    CDS      10761 -     14444   4110  ## COG1410 Methionine synthase I, cobalamin-binding domain
                               +    Term     14477 -     14513    7.1 
                               +    Prom     14462 -     14521    4.3 
    10     9 Tu  1     .       +    CDS      14664 -     16295   1821  ## COG1283 Na+/phosphate symporter
                               -    Term     16347 -     16379    3.2 
    11    10 Tu  1     .       -    CDS      16386 -     17075    812  ## COG3340 Peptidase E
                               -    Prom     17280 -     17339    3.2 
                               +    Prom     17208 -     17267    4.3 
    12    11 Tu  1     .       +    CDS      17287 -     18159    874  ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
                               +    Term     18205 -     18257    2.5 
                               -    Term     18173 -     18222   -0.9 
    13    12 Tu  1     .       -    CDS      18292 -     18564    350  ## B21_03855 hypothetical protein
                               -    Prom     18667 -     18726    6.8 
                               -    Term     18769 -     18810    5.5 
    14    13 Tu  1     .       -    CDS      18817 -     20166   1459  ## COG0527 Aspartokinases
                               +    Prom     20597 -     20656    5.4 
    15    14 Tu  1     .       +    CDS      20691 -     22340   1988  ## COG0166 Glucose-6-phosphate isomerase
                               +    Term     22368 -     22427    6.2 
                               +    Prom     22612 -     22671    9.6 
    16    15 Tu  1     .       +    CDS      22839 -     23081    185  ## 
                               +    Term     23153 -     23180    0.1 
                               +    Prom     23087 -     23146    2.1 
    17    16 Op  1     .       +    CDS      23195 -     23833    651  ## JW5711 predicted lipoprotein
    18    16 Op  2     .       +    CDS      23830 -     24567    535  ## S3554 hypothetical protein
    19    16 Op  3     .       +    CDS      24567 -     26663   2297  ## JW3989 predicted porin
                               +    Term     26671 -     26717    6.0 
                               +    Prom     27068 -     27127    2.5 
    20    17 Tu  1     .       +    CDS      27258 -     27668    597  ## COG3223 Predicted membrane protein
                               +    Term     27707 -     27751    1.9 
                               -    Term     27658 -     27704    8.2 
    21    18 Tu  1     .       -    CDS      27712 -     29187   1657  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     29310 -     29369    5.2 
                               -    Term     29458 -     29488    3.0 
    22    19 Op  1  20/0.000   -    CDS      29559 -     30449   1108  ## COG3833 ABC-type maltose transport systems, permease component
    23    19 Op  2  19/0.000   -    CDS      30464 -     32008   1668  ## COG1175 ABC-type sugar transport systems, permease components
                               -    Prom     32084 -     32143    5.0 
                               -    Term     32052 -     32097    4.3 
    24    19 Op  3     .       -    CDS      32162 -     33352   1460  ## COG2182 Maltose-binding periplasmic proteins/domains
                               +    Prom     33610 -     33669    2.0 
    25    20 Op  1   5/0.200   +    CDS      33717 -     34832   1237  ## COG3839 ABC-type sugar transport systems, ATPase components
    26    20 Op  2     .       +    CDS      34907 -     36244   1493  ## COG4580 Maltoporin (phage lambda and maltose receptor)
                               +    Term     36430 -     36480    1.3 
                               +    Prom     36343 -     36402    4.2 
    27    21 Tu  1     .       +    CDS      36487 -     37407    823  ## B21_03869 hypothetical protein
                               +    Term     37440 -     37471    3.2 
                               -    Term     37268 -     37302   -0.3 
    28    22 Tu  1     .       -    CDS      37382 -     37534     56  ## ECBD_3997 hypothetical protein
                               +    Prom     37451 -     37510    7.2 
    29    23 Tu  1     .       +    CDS      37678 -     37830     57  ## COG1357 Uncharacterized low-complexity proteins
    30    24 Tu  1     .       +    CDS      38347 -     39216    310  ## COG1357 Uncharacterized low-complexity proteins
                               +    Prom     39356 -     39415    4.2 
    31    25 Op  1   6/0.050   +    CDS      39439 -     39936    587  ## COG3161 4-hydroxybenzoate synthetase (chorismate lyase)
    32    25 Op  2     .       +    CDS      39949 -     40821   1090  ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
                               +    Term     40834 -     40863    2.1 
                               -    Term     40819 -     40855    5.8 
    33    26 Tu  1     .       -    CDS      40976 -     43459   2601  ## COG2937 Glycerol-3-phosphate O-acyltransferase
                               -    Prom     43570 -     43629    6.0 
                               +    Prom     43311 -     43370    4.0 
    34    27 Tu  1     .       +    CDS      43570 -     43938    434  ## COG0818 Diacylglycerol kinase
                               +    Term     43951 -     43988   -1.0 
                               +    Prom     43961 -     44020    8.2 
    35    28 Op  1   1/0.900   +    CDS      44048 -     44656    543  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
                               +    Term     44668 -     44707    8.9 
    36    28 Op  2     .       +    CDS      44729 -     46054   1347  ## COG0534 Na+-driven multidrug efflux pump
                               +    Prom     46059 -     46118    2.5 
    37    29 Tu  1     .       +    CDS      46170 -     46379    377  ## COG3237 Uncharacterized protein conserved in bacteria
    38    30 Tu  1     .       -    CDS      46421 -     46936    499  ## COG0735 Fe2+/Zn2+ uptake regulation proteins
                               -    Prom     47085 -     47144    4.1 
                               +    Prom     47037 -     47096    7.7 
    39    31 Op  1     .       +    CDS      47254 -     47508    166  ## SSON_4227 hypothetical protein
    40    31 Op  2     .       +    CDS      47532 -     48239    346  ## JW4008 hypothetical protein
                               +    Term     48281 -     48314    3.1 
                               +    Prom     48322 -     48381    6.1 
    41    32 Tu  1     .       +    CDS      48602 -     49639   1115  ## COG0042 tRNA-dihydrouridine synthase
                               +    Term     49670 -     49707    7.0 
                               +    Prom     49687 -     49746    4.4 
    42    33 Tu  1     .       +    CDS      49773 -     50015    411  ## ECIAI39_4470 phage shock protein G
                               +    Term     50148 -     50189    5.4 
                               -    Term     50139 -     50172    4.1 
    43    34 Tu  1     .       -    CDS      50181 -     51164    829  ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
                               -    Prom     51237 -     51296    1.7 
                               +    Prom     51133 -     51192    3.1 
    44    35 Op  1   9/0.050   +    CDS      51247 -     52662   1603  ## COG0305 Replicative DNA helicase
    45    35 Op  2   5/0.200   +    CDS      52715 -     53794    993  ## COG0787 Alanine racemase
                               +    Prom     53807 -     53866    3.7 
    46    36 Tu  1     .       +    CDS      54047 -     55240   1260  ## COG1448 Aspartate/tyrosine/aromatic aminotransferase
    47    37 Tu  1     .       -    CDS      55742 -     55984    182  ## ECSE_4348 hypothetical protein
                               +    Prom     56164 -     56223    7.7 
    48    38 Tu  1     .       +    CDS      56347 -     57060    528  ## COG3700 Acid phosphatase (class B)
                               +    Prom     57088 -     57147    3.3 
    49    39 Op  1   4/0.500   +    CDS      57171 -     57587    375  ## COG0432 Uncharacterized conserved protein
    50    39 Op  2     .       +    CDS      57591 -     57947    483  ## COG2315 Uncharacterized protein conserved in bacteria
                               -    Term     57944 -     57974    3.4 
    51    40 Tu  1     .       -    CDS      57982 -     60804   3182  ## COG0178 Excinuclease ATPase subunit
                               -    Prom     60865 -     60924    5.0 
                               +    Prom     60972 -     61031    5.6 
    52    41 Tu  1     .       +    CDS      61058 -     61594    735  ## COG0629 Single-stranded DNA-binding protein
                               +    Term     61667 -     61695    1.4 
                               -    Term     61652 -     61686    5.2 
    53    42 Tu  1     .       -    CDS      61693 -     61974    262  ## ECSE_4354 hypothetical protein
                               +    Prom     62277 -     62336    3.7 
    54    43 Tu  1     .       +    CDS      62404 -     63990   1104  ## COG4943 Predicted signal transduction protein containing sensor and EAL domains
                               -    Term     63946 -     63987    7.7 
    55    44 Tu  1     .       -    CDS      63993 -     64316    310  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     64357 -     64416    5.8 
                               +    Prom     64319 -     64378    5.6 
    56    45 Tu  1     .       +    CDS      64402 -     64866    498  ## COG0789 Predicted transcriptional regulators
                               +    Term     64868 -     64894   -0.7 
    57    46 Tu  1     .       +    CDS      65412 -     66761   1598  ## COG2252 Permeases
                               +    Term     66777 -     66820    9.2 
                               +    Prom     66801 -     66860    3.8 
    58    47 Tu  1     .       +    CDS      66912 -     68561   1699  ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters
                               +    Term     68747 -     68781    1.2 
                               -    Term     68590 -     68619    1.4 
    59    48 Tu  1     .       -    CDS      68715 -     70007    416  ## COG1357 Uncharacterized low-complexity proteins
                               -    Prom     70090 -     70149    4.5 
                               -    Term     70138 -     70175    7.8 
    60    49 Op  1  10/0.000   -    CDS      70185 -     71834   2204  ## COG4147 Predicted symporter
    61    49 Op  2     .       -    CDS      71831 -     72145    378  ## COG3162 Predicted membrane protein
                               -    Prom     72197 -     72256    4.2 
    62    50 Tu  1     .       +    CDS      72104 -     72280     60  ## 
                               +    Term     72282 -     72306   -1.0 
                               -    Term     72262 -     72306    4.1 
    63    51 Tu  1     .       -    CDS      72345 -     74303   2293  ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
                               -    Prom     74529 -     74588    7.0 
    64    52 Op  1     .       +    CDS      74696 -     76132   1577  ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
    65    52 Op  2     .       +    CDS      76177 -     76743    385  ## G2583_4896 NrfB, formate-dependent nitrite reductase
    66    52 Op  3   8/0.050   +    CDS      76740 -     77411    428  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
    67    52 Op  4   5/0.200   +    CDS      77408 -     78364   1254  ## COG3301 Formate-dependent nitrite reductase, membrane component
                               +    Term     78365 -     78401   -0.9 
    68    53 Op  1   7/0.050   +    CDS      78498 -     80102   1238  ## COG1138 Cytochrome c biogenesis factor
    69    53 Op  2   9/0.050   +    CDS      80095 -     80478    325  ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes
    70    53 Op  3   4/0.500   +    CDS      80475 -     81071    666  ## COG4235 Cytochrome c biogenesis factor
                               +    Prom     81106 -     81165    8.3 
    71    54 Tu  1     .       +    CDS      81413 -     82726   1736  ## COG1301 Na+/H+-dicarboxylate symporters
                               +    Term     82752 -     82799   -1.0 
                               -    Term     82980 -     83025    3.9 
    72    55 Tu  1   4/0.500   -    CDS      83031 -     83720    599  ## COG0790 FOG: TPR repeat, SEL1 subfamily
                               -    Prom     83744 -     83803    5.1 
                               -    Term     83768 -     83799    4.1 
    73    56 Op  1   5/0.200   -    CDS      83814 -     85493   1815  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    74    56 Op  2   3/0.700   -    CDS      85542 -     85961    308  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Prom     86023 -     86082    3.0 
                               -    Term     86115 -     86152    6.2 
    75    57 Op  1   2/0.800   -    CDS      86159 -     87625   1482  ## COG1538 Outer membrane protein
    76    57 Op  2   6/0.050   -    CDS      87622 -     89673   1488  ## COG1289 Predicted membrane protein
    77    57 Op  3     .       -    CDS      89673 -     90704   1039  ## COG1566 Multidrug resistance efflux pump
    78    57 Op  4     .       -    CDS      90723 -     90998    177  ## EcHS_A4328 hypothetical protein
                               -    Prom     91121 -     91180   13.9 
                               -    Term     91158 -     91197    8.3 
    79    58 Tu  1     .       -    CDS      91207 -     93192   2311  ## COG2015 Alkyl sulfatase and related hydrolases
                               -    Prom     93395 -     93454    5.9 
    80    59 Op  1   2/0.800   -    CDS      93465 -     94394    574  ## COG1940 Transcriptional regulator/sugar kinase
    81    59 Op  2   2/0.800   -    CDS      94378 -     95073    819  ## COG0036 Pentose-5-phosphate-3-epimerase
    82    59 Op  3  21/0.000   -    CDS      95084 -     96064   1083  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
    83    59 Op  4  16/0.000   -    CDS      96043 -     97575    175  ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16
                               -    Prom     97596 -     97655    2.0 
    84    59 Op  5     .       -    CDS      97702 -     98637    939  ## COG1879 ABC-type sugar transport system, periplasmic component
    85    59 Op  6     .       -    CDS      98696 -     99586    571  ## COG1737 Transcriptional regulators
                               -    Prom     99680 -     99739   10.4 
                               +    Prom     99668 -     99727    8.5 
    86    60 Op  1     .       +    CDS      99945 -    100394    324  ## COG0698 Ribose 5-phosphate isomerase RpiB
    87    60 Op  2     .       +    CDS     100463 -    100792    230  ## B21_03923 hypothetical protein
    88    61 Op  1   3/0.700   -    CDS     100939 -    101697    628  ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
    89    61 Op  2   3/0.700   -    CDS     101699 -    102133    523  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
    90    61 Op  3   7/0.050   -    CDS     102120 -    102677    478  ## COG3709 Uncharacterized component of phosphonate metabolism
    91    61 Op  4   6/0.050   -    CDS     102677 -    103813   1143  ## COG3454 Metal-dependent hydrolase involved in phosphonate metabolism
    92    61 Op  5   7/0.050   -    CDS     103810 -    104490    223  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               -    Prom    104530 -    104589    1.9 
    93    62 Op  1   7/0.050   -    CDS     104601 -    105359    376  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    94    62 Op  2   8/0.050   -    CDS     105356 -    106201    898  ## COG3627 Uncharacterized enzyme of phosphonate metabolism
    95    62 Op  3   8/0.050   -    CDS     106194 -    107258   1230  ## COG3626 Uncharacterized enzyme of phosphonate metabolism
    96    62 Op  4   9/0.050   -    CDS     107258 -    107842    654  ## COG3625 Uncharacterized enzyme of phosphonate metabolism
    97    62 Op  5   5/0.200   -    CDS     107839 -    108291    424  ## COG3624 Uncharacterized enzyme of phosphonate metabolism
    98    62 Op  6   3/0.700   -    CDS     108292 -    109017    580  ## COG2188 Transcriptional regulators
    99    62 Op  7   8/0.050   -    CDS     109038 -    109406    391  ## COG3639 ABC-type phosphate/phosphonate transport system, permease component
   100    62 Op  8   8/0.050   -    CDS     109256 -    109825     71  ## COG3639 ABC-type phosphate/phosphonate transport system, permease component
   101    63 Op  1  15/0.000   -    CDS     109931 -    110947   1126  ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component
   102    63 Op  2   3/0.700   -    CDS     110972 -    111760    264  ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16
                               -    Prom    111813 -    111872    4.5 
   103    64 Tu  1     .       -    CDS     111893 -    112336    545  ## COG2764 Uncharacterized protein conserved in bacteria
                               -    Prom    112375 -    112434    1.6 
Predicted protein(s)
>gi|223713531|gb|ACDM01000067.1| GENE     1        69  -       452    258    127 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C4570 NR:ns ## KEGG: UTI89_C4570 # Name: yjaA # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     127      13     139     139     223   97.0  2e-57
MSVLYIQIRRNQITVRDLESKREVSGDAAFSNQRLLIANFFVAEKVLQDLVLQLHPRSTW
HSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVAGATLMKYRQFHIHAQSAVLSDSAV
MAMLKQK
>gi|223713531|gb|ACDM01000067.1| GENE     2       515  -       958    377    147 aa, chain - ## HITS:1  COG:yjaB KEGG:ns NR:ns ## COG: yjaB COG0454 # Protein_GI_number: 16131838 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1     147       1     147     147     304  100.0  4e-83
MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERD
QPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQNEQAVGFYKKV
GFKVTGRSEVDDLGKPYPLLNLAYVGA
>gi|223713531|gb|ACDM01000067.1| GENE     3      1115  -      2044    928    309 aa, chain + ## HITS:1  COG:metA KEGG:ns NR:ns ## COG: metA COG1897 # Protein_GI_number: 16131839 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Escherichia coli K12 # 1     309       1     309     309     627   99.0  1e-179
MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSN
SPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQDQNFDGLIVTGAPLGLVEFNDVAY
WPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTRTDKLSGVYEHHILHPHALLT
RGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGDAYLFASKDKRIAFVTGHPEYDA
QTLAQEFFRDVEAGLDPDVPYNYFPHNDPQNTPRASWRSHGNLLFTNWLNYYVYQITPYD
LRHMNPTLD
>gi|223713531|gb|ACDM01000067.1| GENE     4      2313  -      3914   1581    533 aa, chain + ## HITS:1  COG:aceB KEGG:ns NR:ns ## COG: aceB COG2225 # Protein_GI_number: 16131840 # Func_class: C Energy production and conversion # Function: Malate synthase # Organism: Escherichia coli K12 # 1     533       1     533     533    1112  100.0  0
MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDN
GTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFED
SLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWR
GEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPR
GTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQA
VTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNG
HDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRA
NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFR
QMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA
>gi|223713531|gb|ACDM01000067.1| GENE     5      3944  -      5248   1528    434 aa, chain + ## HITS:1  COG:aceA KEGG:ns NR:ns ## COG: aceA COG2224 # Protein_GI_number: 16131841 # Func_class: C Energy production and conversion # Function: Isocitrate lyase # Organism: Escherichia coli K12 # 1     434       1     434     434     866  100.0  0
MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGE
SKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAV
VERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGA
AAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADL
ITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARR
FAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWF
NMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTS
SVTALTGSTEESQF
>gi|223713531|gb|ACDM01000067.1| GENE     6      5529  -      7265   1264    578 aa, chain + ## HITS:1  COG:aceK KEGG:ns NR:ns ## COG: aceK COG4579 # Protein_GI_number: 16131842 # Func_class: T Signal transduction mechanisms # Function: Isocitrate dehydrogenase kinase/phosphatase # Organism: Escherichia coli K12 # 1     578       1     578     578    1189  100.0  0
MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQQAMKNRIHLYDHHVGL
VVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESFFNSVYCRLFDHRSLTPER
LFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDLPLRLRWQNKSRDIHYIIRHL
TETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSGTLPFLLPIHQTDDGELFIDTCL
TTTAEASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYRE
YLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDRFAPQKEMSAAHVRACYQLV
KEHDRVGRMADTQEFENFVLEKRHISPALMELLLQEAAEKITDLGEQIVIRHLYIERRMV
PLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEIC
YMTEVNFRDIPPPRYPEDELASEPWYSVSPGDVFPEEFRHWLCADPRIGPLFEEMHADLF
RADYWRALQNRIREGHVEDVYAYRRRQRFSVRYGEMLF
>gi|223713531|gb|ACDM01000067.1| GENE     7      7234  -      8586    366    450 aa, chain - ## HITS:1  COG:arp KEGG:ns NR:ns ## COG: arp COG0666 # Protein_GI_number: 16131843 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1     450     279     728     728     877  100.0  0
MSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPP
LSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIV
ETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAA
THHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDL
LKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGL
FMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVV
ETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAE
SFGFTDNPRYIAEKNYMEALLKKASPHTVR
>gi|223713531|gb|ACDM01000067.1| GENE     8      9737  -     10561    715    274 aa, chain - ## HITS:1  COG:ECs4936 KEGG:ns NR:ns ## COG: ECs4936 COG1414 # Protein_GI_number: 15834190 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     274      14     287     287     526  100.0  1e-149
MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTT
HRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETV
NMAVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHR
KGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISI
SGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR
>gi|223713531|gb|ACDM01000067.1| GENE     9     10761  -     14444   4110   1227 aa, chain + ## HITS:1  COG:metH_2 KEGG:ns NR:ns ## COG: metH_2 COG1410 # Protein_GI_number: 16131845 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Escherichia coli K12 # 327    1227       1     901     901    1832   99.0  0
MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSK
PEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTA
RTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILI
ETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEA
LTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQ
AGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVG
ERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLI
AGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAV
VVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQ
DFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAG
QLAIYDDLPAELCDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVN
KRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVK
SARVMKQAVAYLEPFIEASKEQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL
GVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKA
HTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPR
TPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKY
PRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRT
HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQH
DDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYP
ACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQV
EDYARRKGMSVTEVERWLAPNLGYDAD
>gi|223713531|gb|ACDM01000067.1| GENE    10     14664  -     16295   1821    543 aa, chain + ## HITS:1  COG:yjbB KEGG:ns NR:ns ## COG: yjbB COG1283 # Protein_GI_number: 16131846 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Escherichia coli K12 # 1     543       1     543     543     945  100.0  0
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQS
SNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFL
GRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAM
FAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVAL
GSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARF
CKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGE
PRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVER
MGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRF
RILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGR
DEY
>gi|223713531|gb|ACDM01000067.1| GENE    11     16386  -     17075    812    229 aa, chain - ## HITS:1  COG:ECs4939 KEGG:ns NR:ns ## COG: ECs4939 COG3340 # Protein_GI_number: 15834193 # Func_class: E Amino acid transport and metabolism # Function: Peptidase E # Organism: Escherichia coli O157:H7 # 1     229       1     229     229     451   99.0  1e-127
MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQTWDDYTAKTAAVLAPL
GVSVTGIHSVVDPVAAIENTEIVIVGGGNTFQLLKQCRERGLLAPITDVVKRGALYIGWS
AGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTNALPEGHKGETREQRIRELLV
VAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGEEAVPLEAGHRF
>gi|223713531|gb|ACDM01000067.1| GENE    12     17287  -     18159    874    290 aa, chain + ## HITS:1  COG:yjbC KEGG:ns NR:ns ## COG: yjbC COG1187 # Protein_GI_number: 16131848 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1     290       1     290     290     518  100.0  1e-147
MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE
PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG
DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT
LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS
SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
>gi|223713531|gb|ACDM01000067.1| GENE    13     18292  -     18564    350     90 aa, chain - ## HITS:1  COG:no KEGG:B21_03855 NR:ns ## KEGG: B21_03855 # Name: yjbD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      90       1      90      90     120  100.0  2e-26
MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKK
ARQLKKKQAYKPDPEASFSWSANTSTRGRR
>gi|223713531|gb|ACDM01000067.1| GENE    14     18817  -     20166   1459    449 aa, chain - ## HITS:1  COG:lysC KEGG:ns NR:ns ## COG: lysC COG0527 # Protein_GI_number: 16131850 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1     449       1     449     449     786   99.0  0
MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER
FEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGEL
MSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVI
TQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRI
DEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTMVCNKTENPPLFR
ALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTS
TGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICY
GASSHNLCFLVPGEDAEQVVQKLHSNLFE
>gi|223713531|gb|ACDM01000067.1| GENE    15     20691  -     22340   1988    549 aa, chain + ## HITS:1  COG:ECs5008 KEGG:ns NR:ns ## COG: ECs5008 COG0166 # Protein_GI_number: 15834262 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1     549       1     549     549    1134  100.0  0
MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSATFDDQMLVDYSKNRITE
ETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALRNRSNTPILVDGKDVMPEV
NAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDLGPYMVTEALRPYKNHLNMHF
VSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKAAGDEKHVAKHF
AALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIVLSIGFDNFVELLSGAHAM
DKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKY
VDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNPLSDHHQKL
LSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLDYVVPFKVFEGNRPTNSILLREITPF
SLGALIALYEHKIFTQGVILNIFTFDQWGVELGKQLANRILPELKDDKEISSHDSSTNGL
INRYKAWRG
>gi|223713531|gb|ACDM01000067.1| GENE    16     22839  -     23081    185     80 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSATSVSTVSSAVGVALAA
TGGGDGSNTGTTTTTTTSTQ
>gi|223713531|gb|ACDM01000067.1| GENE    17     23195  -     23833    651    212 aa, chain + ## HITS:1  COG:no KEGG:JW5711 NR:ns ## KEGG: JW5711 # Name: yjbF # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1     212       1     212     212     415  100.0  1e-115
MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP
QLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVD
GASWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETPVRVLDEEVSTDQARWHNRY
WIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
>gi|223713531|gb|ACDM01000067.1| GENE    18     23830  -     24567    535    245 aa, chain + ## HITS:1  COG:no KEGG:S3554 NR:ns ## KEGG: S3554 # Name: yjbG # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1     245       1     245     245     447   98.0  1e-124
MIKQTIVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLIDLVGQPRLANSWWPGA
VISEELATAAALRQQQALLTRLAEQGADSSADDAAAINALRQQIQALKVTGRQKINLDPD
IVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQPFTPGRDVASYLSDQSLLSGA
DRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVGLADSVWSETPDALNADILQTLT
QRIPQ
>gi|223713531|gb|ACDM01000067.1| GENE    19     24567  -     26663   2297    698 aa, chain + ## HITS:1  COG:no KEGG:JW3989 NR:ns ## KEGG: JW3989 # Name: yjbH # Def: predicted porin # Organism: E.coli_J # Pathway: not_defined # 1     698       1     698     698    1415  100.0  0
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ
HSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI
KTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDK
SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEV
LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGP
TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
>gi|223713531|gb|ACDM01000067.1| GENE    20     27258  -     27668    597    136 aa, chain + ## HITS:1  COG:yjbA KEGG:ns NR:ns ## COG: yjbA COG3223 # Protein_GI_number: 16131856 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     136       1     136     136     199  100.0  2e-51
MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLADVLFAPEQTSKYELVEG
LVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKSPLDVLIYSAAILL
LVITLWLCNSKRLKRE
>gi|223713531|gb|ACDM01000067.1| GENE    21     27712  -     29187   1657    491 aa, chain - ## HITS:1  COG:ECs5014 KEGG:ns NR:ns ## COG: ECs5014 COG0477 # Protein_GI_number: 15834268 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     491       1     491     491     940  100.0  0
MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFC
VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPV
YLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC
VNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL
RKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA
PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG
TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY
FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP
ETKKTQQTATL
>gi|223713531|gb|ACDM01000067.1| GENE    22     29559  -     30449   1108    296 aa, chain - ## HITS:1  COG:ECs5015 KEGG:ns NR:ns ## COG: ECs5015 COG3833 # Protein_GI_number: 15834269 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Escherichia coli O157:H7 # 1     296       1     296     296     519  100.0  1e-147
MAMVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWK
LALGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKAT
LLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGY
FETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV
NSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLTAGGVKG
>gi|223713531|gb|ACDM01000067.1| GENE    23     30464  -     32008   1668    514 aa, chain - ## HITS:1  COG:malF KEGG:ns NR:ns ## COG: malF COG1175 # Protein_GI_number: 16131859 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1     514       1     514     514     978  100.0  0
MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANR
KAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTY
NFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNR
QALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSI
TADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGM
VLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPA
WFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLP
LLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGG
GQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD
>gi|223713531|gb|ACDM01000067.1| GENE    24     32162  -     33352   1460    396 aa, chain - ## HITS:1  COG:ECs5017 KEGG:ns NR:ns ## COG: ECs5017 COG2182 # Protein_GI_number: 15834271 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Escherichia coli O157:H7 # 1     396       1     396     396     764  100.0  0
MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK
VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW
DAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP
YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAE
AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE
LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIP
QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK
>gi|223713531|gb|ACDM01000067.1| GENE    25     33717  -     34832   1237    371 aa, chain + ## HITS:1  COG:ECs5018 KEGG:ns NR:ns ## COG: ECs5018 COG3839 # Protein_GI_number: 15834272 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1     371       1     371     371     729  100.0  0
MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL
FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV
LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH
KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN
FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVIL
EGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGT
ACRRLHKEPGV
>gi|223713531|gb|ACDM01000067.1| GENE    26     34907  -     36244   1493    445 aa, chain + ## HITS:1  COG:lamB KEGG:ns NR:ns ## COG: lamB COG4580 # Protein_GI_number: 16131862 # Func_class: G Carbohydrate transport and metabolism # Function: Maltoporin (phage lambda and maltose receptor) # Organism: Escherichia coli K12 # 1     445       2     446     446     849  100.0  0
MITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGN
ECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLP
GSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFA
SNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFT
AEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHG
AISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRT
GDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPA
DFNGGSFGRGDSDEWTFGAQMEIWW
>gi|223713531|gb|ACDM01000067.1| GENE    27     36487  -     37407    823    306 aa, chain + ## HITS:1  COG:no KEGG:B21_03869 NR:ns ## KEGG: B21_03869 # Name: malM # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     306       1     306     306     498   99.0  1e-139
MKMNKSLIVLCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQ
TTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTP
SAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKA
YAKGVGNSIPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPA
VAAPAPAPVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSISARSTFIS
SVKGKG
>gi|223713531|gb|ACDM01000067.1| GENE    28     37382  -     37534     56     50 aa, chain - ## HITS:1  COG:no KEGG:ECBD_3997 NR:ns ## KEGG: ECBD_3997 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      50       1      50      50      94  100.0  8e-19
MDILSEEEVSYYKKSLISQEGSIKKGAPGDAPVVAKSALWGVITPCLLHC
>gi|223713531|gb|ACDM01000067.1| GENE    29     37678  -     37830     57     50 aa, chain + ## HITS:1  COG:ECs5021_1 KEGG:ns NR:ns ## COG: ECs5021_1 COG1357 # Protein_GI_number: 15834275 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli O157:H7 # 1      47      15      61     277      77   85.0  7e-15
MKHDVVQGNNIVDLDLLRNLNGVPGLNRDNFIYISNIFSNIKQRNEKIMQ
>gi|223713531|gb|ACDM01000067.1| GENE    30     38347  -     39216    310    289 aa, chain + ## HITS:1  COG:yjbI_1 KEGG:ns NR:ns ## COG: yjbI_1 COG1357 # Protein_GI_number: 16131864 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli K12 # 1      95     154     248     248     187  100.0  3e-47
MFDYVRMSTGNFKDCITEQLELTIDYSDIFWNEDLDGYINNIIKMIDTLPDNAMILKSVL
AVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPIIRSYIHSDEDNKFDDFMRQHRFSE
VNFDTQQMIDFINRFNTNKWLIDKNNNFFIQLIDQALRSTDDMIKANVWHLYKEWIRSDD
VSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNS
TYIYKSRHEMLPVNLTQETLFSSKSHGKYALFPIFTASWRAHRIMNKGV
>gi|223713531|gb|ACDM01000067.1| GENE    31     39439  -     39936    587    165 aa, chain + ## HITS:1  COG:ubiC KEGG:ns NR:ns ## COG: ubiC COG3161 # Protein_GI_number: 16131865 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate synthetase (chorismate lyase) # Organism: Escherichia coli K12 # 1     165      38     202     202     314  100.0  6e-86
MSHPALTQLRALRYCKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNE
IPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLF
TSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY
>gi|223713531|gb|ACDM01000067.1| GENE    32     39949  -     40821   1090    290 aa, chain + ## HITS:1  COG:ECs5023 KEGG:ns NR:ns ## COG: ECs5023 COG0382 # Protein_GI_number: 15834277 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Escherichia coli O157:H7 # 1     290       1     290     290     513  100.0  1e-145
MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMR
AAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTIL
LSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWA
VAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGILQIGVLALMAIIGELNGLGWGYY
WSILVAGALFVYQQKLIANREREACFKAFMNNNYVGLVLFLGLAMSYWHF
>gi|223713531|gb|ACDM01000067.1| GENE    33     40976  -     43459   2601    827 aa, chain - ## HITS:1  COG:plsB KEGG:ns NR:ns ## COG: plsB COG2937 # Protein_GI_number: 16131867 # Func_class: I Lipid transport and metabolism # Function: Glycerol-3-phosphate O-acyltransferase # Organism: Escherichia coli K12 # 1     827       1     827     827    1661  100.0  0
MTFCYPCRAFALLTRGFTSFMSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRP
IMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEE
SIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKL
LASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQ
GINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPA
GPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTG
TLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLR
NLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAG
AANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHAL
QMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLME
HVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLA
AGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLV
LTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLTIESATQGEG
>gi|223713531|gb|ACDM01000067.1| GENE    34     43570  -     43938    434    122 aa, chain + ## HITS:1  COG:ECs5025 KEGG:ns NR:ns ## COG: ECs5025 COG0818 # Protein_GI_number: 15834279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Escherichia coli O157:H7 # 1     122       1     122     122     194   99.0  5e-50
MANNTTGFTRIIKAAGYSWNGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLI
SSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSH
FG
>gi|223713531|gb|ACDM01000067.1| GENE    35     44048  -     44656    543    202 aa, chain + ## HITS:1  COG:ECs5026 KEGG:ns NR:ns ## COG: ECs5026 COG1974 # Protein_GI_number: 15834280 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1     202       1     202     202     380  100.0  1e-106
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS
GASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSM
KDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVD
LRQQSFTIEGLAVGVIRNGDWL
>gi|223713531|gb|ACDM01000067.1| GENE    36     44729  -     46054   1347    441 aa, chain + ## HITS:1  COG:dinF KEGG:ns NR:ns ## COG: dinF COG0534 # Protein_GI_number: 16131870 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli K12 # 1     441      19     459     459     682  100.0  0
MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM
LLLFLRMSTTGLTAQAYGAKNPQALARTLVQPLLLALGAGALIALLRTPIIDLALHIVGG
SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLV
MGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRD
IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYG
ARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVIL
PVVGVWCYLLDGMFIGATRATEMRNSMAVAAAGFALTLLTLPWLGNHALWLALTVFLALR
GLSLAAIWRRHWRNGTWFAAT
>gi|223713531|gb|ACDM01000067.1| GENE    37     46170  -     46379    377     69 aa, chain + ## HITS:1  COG:ECs5028 KEGG:ns NR:ns ## COG: ECs5028 COG3237 # Protein_GI_number: 15834282 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      69       1      69      69      95  100.0  2e-20
MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVD
WETRNEYRW
>gi|223713531|gb|ACDM01000067.1| GENE    38     46421  -     46936    499    171 aa, chain - ## HITS:1  COG:zur KEGG:ns NR:ns ## COG: zur COG0735 # Protein_GI_number: 16131872 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Escherichia coli K12 # 1     171      21     191     191     325  100.0  3e-89
MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLREAEPQAKP
PTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDI
MHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQHDHSVQVKKKPR
>gi|223713531|gb|ACDM01000067.1| GENE    39     47254  -     47508    166     84 aa, chain + ## HITS:1  COG:no KEGG:SSON_4227 NR:ns ## KEGG: SSON_4227 # Name: yjbL # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      84       1      84      84     157  100.0  9e-38
MLKIIPGATGYFNKTLNSNQFDNEDAIKDKLDNRGSIKGKLNNIYGKSIDYAALRHRDII
IAKIDLFIQRITHNLWHARKKMCF
>gi|223713531|gb|ACDM01000067.1| GENE    40     47532  -     48239    346    235 aa, chain + ## HITS:1  COG:no KEGG:JW4008 NR:ns ## KEGG: JW4008 # Name: yjbM # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     235       1     235     235     425  100.0  1e-118
MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN
DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS
AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV
NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK
>gi|223713531|gb|ACDM01000067.1| GENE    41     48602  -     49639   1115    345 aa, chain + ## HITS:1  COG:ECs5031 KEGG:ns NR:ns ## COG: ECs5031 COG0042 # Protein_GI_number: 15834285 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli O157:H7 # 1     345       1     345     345     732  100.0  0
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVT
TGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ
NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGEC
EMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ
HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHIT
RHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR
>gi|223713531|gb|ACDM01000067.1| GENE    42     49773  -     50015    411     80 aa, chain + ## HITS:1  COG:no KEGG:ECIAI39_4470 NR:ns ## KEGG: ECIAI39_4470 # Name: pspG # Def: phage shock protein G # Organism: E.coli_IAI39 # Pathway: not_defined # 1      80      71     150     150     128   98.0  8e-29
MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV
IKAIKAPKVPKYQRYDRWRY
>gi|223713531|gb|ACDM01000067.1| GENE    43     50181  -     51164    829    327 aa, chain - ## HITS:1  COG:qor KEGG:ns NR:ns ## COG: qor COG0604 # Protein_GI_number: 16131877 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Escherichia coli K12 # 1     327       1     327     327     629  100.0  1e-180
MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG
LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA
SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS
ALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN
SSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQ
KYPLKDAQRAHEILESRATQGSSLLIP
>gi|223713531|gb|ACDM01000067.1| GENE    44     51247  -     52662   1603    471 aa, chain + ## HITS:1  COG:dnaB KEGG:ns NR:ns ## COG: dnaB COG0305 # Protein_GI_number: 16131878 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Escherichia coli K12 # 1     471       1     471     471     892  100.0  0
MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDF
YTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANIS
AYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPK
NIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTF
AMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGT
MGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLE
IAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR
DEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>gi|223713531|gb|ACDM01000067.1| GENE    45     52715  -     53794    993    359 aa, chain + ## HITS:1  COG:alr KEGG:ns NR:ns ## COG: alr COG0787 # Protein_GI_number: 16131879 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli K12 # 1     359       1     359     359     726  100.0  0
MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARL
EEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVW
MKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNT
FCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS
LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGR
VAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKYVD
>gi|223713531|gb|ACDM01000067.1| GENE    46     54047  -     55240   1260    397 aa, chain + ## HITS:1  COG:tyrB KEGG:ns NR:ns ## COG: tyrB COG1448 # Protein_GI_number: 16131880 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1     397       1     397     397     808  100.0  0
MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP
HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP
ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHP
CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL
VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN
DEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD
RLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM
>gi|223713531|gb|ACDM01000067.1| GENE    47     55742  -     55984    182     80 aa, chain - ## HITS:1  COG:no KEGG:ECSE_4348 NR:ns ## KEGG: ECSE_4348 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      59       1      59     139     108   98.0  5e-23
MVINFITRDGDDDMNISYVNSNKTTSLPVELDALNNKDISYAKDFFLYIETQLKIAKDFL
DLEKKYQVLLQVKFFTHLLI
>gi|223713531|gb|ACDM01000067.1| GENE    48     56347  -     57060    528    237 aa, chain + ## HITS:1  COG:aphA KEGG:ns NR:ns ## COG: aphA COG3700 # Protein_GI_number: 16131881 # Func_class: R General function prediction only # Function: Acid phosphatase (class B) # Organism: Escherichia coli K12 # 1     237       1     237     237     473  100.0  1e-133
MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAG
RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVAR
QLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQW
LQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
>gi|223713531|gb|ACDM01000067.1| GENE    49     57171  -     57587    375    138 aa, chain + ## HITS:1  COG:ECs5038 KEGG:ns NR:ns ## COG: ECs5038 COG0432 # Protein_GI_number: 15834292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     138       1     138     138     277  100.0  3e-75
MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQHTSASLTLNENCDPTVR
HDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLG
EHRIHGGSRRIIATLQGE
>gi|223713531|gb|ACDM01000067.1| GENE    50     57591  -     57947    483    118 aa, chain + ## HITS:1  COG:ECs5039 KEGG:ns NR:ns ## COG: ECs5039 COG2315 # Protein_GI_number: 15834293 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     118       1     118     118     216  100.0  5e-57
MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELL
RQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
>gi|223713531|gb|ACDM01000067.1| GENE    51     57982  -     60804   3182    940 aa, chain - ## HITS:1  COG:uvrA KEGG:ns NR:ns ## COG: uvrA COG0178 # Protein_GI_number: 16131884 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Escherichia coli K12 # 1     940       1     940     940    1900  100.0  0
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP
KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL
SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY
MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH
VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE
SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML
>gi|223713531|gb|ACDM01000067.1| GENE    52     61058  -     61594    735    178 aa, chain + ## HITS:1  COG:ECs5041 KEGG:ns NR:ns ## COG: ECs5041 COG0629 # Protein_GI_number: 15834295 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Escherichia coli O157:H7 # 1     178       1     178     178     270  100.0  1e-72
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL
FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG
APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF
>gi|223713531|gb|ACDM01000067.1| GENE    53     61693  -     61974    262     93 aa, chain - ## HITS:1  COG:no KEGG:ECSE_4354 NR:ns ## KEGG: ECSE_4354 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      93      34     126     126     166  100.0  3e-40
MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG
ITMADITAIWHNIESVMIEEMNQTPPQWPMILT
>gi|223713531|gb|ACDM01000067.1| GENE    54     62404  -     63990   1104    528 aa, chain + ## HITS:1  COG:yjcC KEGG:ns NR:ns ## COG: yjcC COG4943 # Protein_GI_number: 16131887 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Escherichia coli K12 # 1     528       1     528     528    1057  100.0  0
MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQA
DLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAP
ADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTV
TKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFY
NHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCI
GAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSI
NLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVA
IDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEG
VETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ
>gi|223713531|gb|ACDM01000067.1| GENE    55     63993  -     64316    310    107 aa, chain - ## HITS:1  COG:ECs5044 KEGG:ns NR:ns ## COG: ECs5044 COG2207 # Protein_GI_number: 15834298 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     107       1     107     107     194  100.0  3e-50
MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL
LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHRL
>gi|223713531|gb|ACDM01000067.1| GENE    56     64402  -     64866    498    154 aa, chain + ## HITS:1  COG:ECs5045 KEGG:ns NR:ns ## COG: ECs5045 COG0789 # Protein_GI_number: 15834299 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     154       1     154     154     301  100.0  2e-82
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAII
KIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI
GCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
>gi|223713531|gb|ACDM01000067.1| GENE    57     65412  -     66761   1598    449 aa, chain + ## HITS:1  COG:ECs5046 KEGG:ns NR:ns ## COG: ECs5046 COG2252 # Protein_GI_number: 15834300 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli O157:H7 # 1     449       1     449     449     689  100.0  0
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV
FVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL
FTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFA
TFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENG
NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALT
TDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGY
ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRL
VSGEWRKLNIGTVVIAVALVTFYAGGWAI
>gi|223713531|gb|ACDM01000067.1| GENE    58     66912  -     68561   1699    549 aa, chain + ## HITS:1  COG:ECs5047 KEGG:ns NR:ns ## COG: ECs5047 COG0025 # Protein_GI_number: 15834301 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Escherichia coli O157:H7 # 1     549       1     549     549     979  100.0  0
MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWPTFGLHVEFDPELFLVL
FIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGFLIYWVVPGIPLIPAFALA
AVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMIFTVGG
ATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIG
VSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILET
SLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGWLWTMKKFSNRFLKKKPMEFGSWTTRE
ILIASFAGVRGAITLAGVLSIPLLLPDGNVFPARYELVFLAAGVILFSLFVGVVMLPILL
QHIEVADHSQQLKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGN
LRRRADGRNDVESSVQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLL
EALLIEENQ
>gi|223713531|gb|ACDM01000067.1| GENE    59     68715  -     70007    416    430 aa, chain - ## HITS:1  COG:yjcF KEGG:ns NR:ns ## COG: yjcF COG1357 # Protein_GI_number: 16131892 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli K12 # 1     430       1     430     430     771   99.0  0
MRYNGLNNMFFPLCLINDNHSVTNPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEK
VIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVS
IKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQ
DCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIK
NTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQ
NINLIDSKLFFTRLTNTFLEMVICTGSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLY
RVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMK
ITADIMQDAD
>gi|223713531|gb|ACDM01000067.1| GENE    60     70185  -     71834   2204    549 aa, chain - ## HITS:1  COG:yjcG KEGG:ns NR:ns ## COG: yjcG COG4147 # Protein_GI_number: 16131893 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli K12 # 1     549       1     549     549     961  100.0  0
MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSR
SDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFL
IAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN
YHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSE
AMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFY
ATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFI
SAVAFATILAVVAGLTLAGASAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILG
VLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMMGGWLGLITAVVLMILGP
TIWVQILGHEKAIFPYEYPALFSITVAFLGIWFFSATDNSAEGARERELFRAQFIRSQTG
FGVEQGRAH
>gi|223713531|gb|ACDM01000067.1| GENE    61     71831  -     72145    378    104 aa, chain - ## HITS:1  COG:yjcH KEGG:ns NR:ns ## COG: yjcH COG3162 # Protein_GI_number: 16131894 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     104       1     104     104     199  100.0  1e-51
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS
VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS
>gi|223713531|gb|ACDM01000067.1| GENE    62     72104  -     72280     60     58 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MRIVFYPLINSAIHHRFSRGNVGIVLIPAPLWEKVNARVTLAECRPDKAFTPHPAINA
>gi|223713531|gb|ACDM01000067.1| GENE    63     72345  -     74303   2293    652 aa, chain - ## HITS:1  COG:acs KEGG:ns NR:ns ## COG: acs COG0365 # Protein_GI_number: 16131895 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Escherichia coli K12 # 1     652       1     652     652    1354  100.0  0
MSQIHKHTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSF
APGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDASQSKHISYKELHRDVCRF
ANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNS
RLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDL
VEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDI
YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTA
IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGG
FMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQARTLFGD
HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP
KIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD
SLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>gi|223713531|gb|ACDM01000067.1| GENE    64     74696  -     76132   1577    478 aa, chain + ## HITS:1  COG:ECs5052 KEGG:ns NR:ns ## COG: ECs5052 COG3303 # Protein_GI_number: 15834306 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Escherichia coli O157:H7 # 1     478       1     478     478     972  100.0  0
MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNETFAPQHPDQYLSWKATS
EQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVRETLRTGAPKNAEDGPLPM
ACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPEFAKGKPELTL
SRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQ
YYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTD
HKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQSINDLKIKVEDQLVHAHFEAKAALDA
GATEAEMKPIQDDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGTAMDKAADARTKLARLL
ATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGLLSQ
>gi|223713531|gb|ACDM01000067.1| GENE    65     76177  -     76743    385    188 aa, chain + ## HITS:1  COG:no KEGG:G2583_4896 NR:ns ## KEGG: G2583_4896 # Name: nrfB # Def: NrfB, formate-dependent nitrite reductase # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     188       3     190     190     362  100.0  5e-99
MSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAACLDCHKPDTEGM
HGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEPMYKVGEQNSVCMSCHLPE
QLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRIKICVDCHSDQRTNPNFNPAS
VPLLKEQP
>gi|223713531|gb|ACDM01000067.1| GENE    66     76740  -     77411    428    223 aa, chain + ## HITS:1  COG:ECs5054 KEGG:ns NR:ns ## COG: ECs5054 COG0437 # Protein_GI_number: 15834308 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1     223       1     223     223     446  100.0  1e-125
MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVN
KVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVDVCPTGASFRDAASGIVDV
NPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLQAGKLPACVEACPTKALTFG
NLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKYGEVSQ
>gi|223713531|gb|ACDM01000067.1| GENE    67     77408  -     78364   1254    318 aa, chain + ## HITS:1  COG:nrfD KEGG:ns NR:ns ## COG: nrfD COG3301 # Protein_GI_number: 16131899 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Escherichia coli K12 # 1     318       1     318     318     525  100.0  1e-149
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVG
PGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDL
LALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPI
LPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLA
LGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLV
GVLMLRFFILYAGQLTVA
>gi|223713531|gb|ACDM01000067.1| GENE    68     78498  -     80102   1238    534 aa, chain + ## HITS:1  COG:nrfE KEGG:ns NR:ns ## COG: nrfE COG1138 # Protein_GI_number: 16131900 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1     534      19     552     552     912  100.0  0
MRLTCIGILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGS
LLLWVLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAI
EGRDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDGACARICWRWALPGW
SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFCHWS
LLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGWRARD
GGPAVHFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNRATL
PFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGVVVSSVSRQEISLNLQPGQQVT
LAGYTFRFECLDLQAKGNYTSEKAIVALFDHQQRIGELTPERRFYEARRQQMMEPSIRWN
GIHDWYAVMGEKTGPDRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWRGKKRDE
>gi|223713531|gb|ACDM01000067.1| GENE    69     80095  -     80478    325    127 aa, chain + ## HITS:1  COG:nrfF KEGG:ns NR:ns ## COG: nrfF COG3088 # Protein_GI_number: 16131901 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Escherichia coli K12 # 1     127       1     127     127     188  100.0  2e-48
MNKGLLTLLLLFTCFAHAQVVDTWQFANPQQQQQALNIASQLRCPQCQNQNLLESNAPVA
VSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLMALIL
WRVRAKR
>gi|223713531|gb|ACDM01000067.1| GENE    70     80475  -     81071    666    198 aa, chain + ## HITS:1  COG:nrfG KEGG:ns NR:ns ## COG: nrfG COG4235 # Protein_GI_number: 16131902 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1     198       1     198     198     328  100.0  5e-90
MKQPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVRAEYQRQRDPLHQFASQQTPEAQLQ
ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ
ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRVNR
TQLVESINMAKLLQRRLD
>gi|223713531|gb|ACDM01000067.1| GENE    71     81413  -     82726   1736    437 aa, chain + ## HITS:1  COG:ECs5059 KEGG:ns NR:ns ## COG: ECs5059 COG1301 # Protein_GI_number: 15834313 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli O157:H7 # 1     437       1     437     437     751  100.0  0
MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIV
ISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATV
DISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPAT
HREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFA
ILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPASI
TSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGV
SFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKA
LAYEREVLGKFDKTADQ
>gi|223713531|gb|ACDM01000067.1| GENE    72     83031  -     83720    599    229 aa, chain - ## HITS:1  COG:ECs5060 KEGG:ns NR:ns ## COG: ECs5060 COG0790 # Protein_GI_number: 15834314 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli O157:H7 # 1     229       1     229     229     433  100.0  1e-121
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQK
AADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKP
DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGY
SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
>gi|223713531|gb|ACDM01000067.1| GENE    73     83814  -     85493   1815    559 aa, chain - ## HITS:1  COG:fdhF KEGG:ns NR:ns ## COG: fdhF COG0243 # Protein_GI_number: 16131905 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     559     157     715     715    1172  100.0  0
MSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHI
ALKNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS
EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQN
NVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVR
AAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFT
AADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGAT
YEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMV
LSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKII
TRAQVSDRPNKGAIYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQ
YVIDEYNKLKTRLREAALA
>gi|223713531|gb|ACDM01000067.1| GENE    74     85542  -     85961    308    139 aa, chain - ## HITS:1  COG:ECs5061 KEGG:ns NR:ns ## COG: ECs5061 COG0243 # Protein_GI_number: 15834315 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli O157:H7 # 1     139       1     139     715     296  100.0  6e-81
MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTP
RLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVM
QKFARAVIGTNNVDCCARV
>gi|223713531|gb|ACDM01000067.1| GENE    75     86159  -     87625   1482    488 aa, chain - ## HITS:1  COG:yjcP KEGG:ns NR:ns ## COG: yjcP COG1538 # Protein_GI_number: 16131906 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli K12 # 1     488       1     488     488     890  100.0  0
MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQW
WKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDAGSQLQVAALGMLNRQRVS
ANGFLSPYSMDAPALGMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAAIGAHNAALAETA
AVELSLATGVAQLYYSMQASYQMLDLLEQTHDVIDYAVKAHQSKVAHGLEAQVPFHGARA
QILAVDKQIVAVKGQITETRESLRALIGAGASDMPEIRPVALPQVQTGIPATLSYELLAR
RPDLQAMRWYVQASLDQVDSARALFYPSFDIKAFFGLDSIHLHTLFKKTSRQFNFIPGLK
LPLFDGGRLNANLEGTRAASNMMIERYNQSVLNAVRDVAVNGTRLQTLNDEREMQAERVE
ATRFTQRAAEAAYQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQSIQLMKSLGGGYQ
AGPVVEKK
>gi|223713531|gb|ACDM01000067.1| GENE    76     87622  -     89673   1488    683 aa, chain - ## HITS:1  COG:yjcQ KEGG:ns NR:ns ## COG: yjcQ COG1289 # Protein_GI_number: 16131907 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 48     683       1     636     636    1232  100.0  0
MSALNSLPLPVVRLLAFFHEELSERRPGRVPQTVQLWVGCLLVILISMTFEIPFVALSLA
VLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEPLIRLIIAGPILMGCMFLM
RTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPS
RAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNVFCLADDANWRTQNAW
WQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKLASEINKLQHAVAEGQCWQSDWRIS
ESEAMAARECNLENICQTLLQLGQMDPNTPPTPAAKPPSMAADAFTNPDYMRYAVKTLLA
CLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVM
PWLDNIVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIR
DRALGIIIGTVVSAVIYTFVWPESEARTLPQKLAGTLGMLSKVMRIPRQQEVTALRTYLQ
IRIGLHAAFNACEEMCQRVALERQLDSEERALLIERSQTVIRQGRDLLHAWDATWNSAQA
LDNALQPDRAGQFADALEKYAAGLATALSRSPQITLEETPASQAILPTLLKQEQHVCQLF
ARLPDWTAPALTPATEQAQGATQ
>gi|223713531|gb|ACDM01000067.1| GENE    77     89673  -     90704   1039    343 aa, chain - ## HITS:1  COG:yjcR KEGG:ns NR:ns ## COG: yjcR COG1566 # Protein_GI_number: 16131908 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     343       1     343     343     583  100.0  1e-166
MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIV
ELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVN
ATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAAS
AVSGVDALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLI
DTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGL
PKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVANLEPQ
>gi|223713531|gb|ACDM01000067.1| GENE    78     90723  -     90998    177     91 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A4328 NR:ns ## KEGG: EcHS_A4328 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1      91      17     107     107     142  100.0  4e-33
MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRV
IQRANINLAFVGIIYTALFALYAMLFWLAFF
>gi|223713531|gb|ACDM01000067.1| GENE    79     91207  -     93192   2311    661 aa, chain - ## HITS:1  COG:yjcS KEGG:ns NR:ns ## COG: yjcS COG2015 # Protein_GI_number: 16131909 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alkyl sulfatase and related hydrolases # Organism: Escherichia coli K12 # 1     661       5     665     665    1328  100.0  0
MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVNQNYAKSLPFSDRQDFD
DAQRGFIAPLLDEGILRDANGKVYYRADDYKFDINAAAPETVNPSLWRQSQINGISGLFK
VTDKMYQVRGQDISNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRPQKPIVAVIYTH
SHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISENVLAGNIMSRRALYSYGLLLPH
NAQGNVGNGLGVTLATGDPSIIAPTKTIVRTGEKMIIDGLEFDFLMTPGSEAPAEMHFYI
PALKALCTAENATHTLHNFYTLRGAKTRDTSKWTEYLNETLDMWGNDAEVLFMPHTWPVW
GNKHINDYIGKYRDTIKYIHDQTLHLANQGYTMNEIGDMIKLPPALANNWASRGYYGSVS
HNARAVYNFYLGYYDGNPANLHPYGQVEMGKRYVQALGGSARVINLAQEANKQGDYRWSA
ELLKQVIAANPGDQVAKNLQANNFEQLGYQAESATWRGFYLTGAKELREGVHKFSHGTTG
SPDTIRGMSVEMLFDFMAVRLDSAKAAGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQP
QADASFYISREDLHAVLTGQAKMADLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTP
N
>gi|223713531|gb|ACDM01000067.1| GENE    80     93465  -     94394    574    309 aa, chain - ## HITS:1  COG:alsK KEGG:ns NR:ns ## COG: alsK COG1940 # Protein_GI_number: 16131910 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1     309       1     309     309     649  100.0  0
MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRF
NARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQL
SWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGN
PGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPD
AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRF
LPQFCAKAP
>gi|223713531|gb|ACDM01000067.1| GENE    81     94378  -     95073    819    231 aa, chain - ## HITS:1  COG:alsE KEGG:ns NR:ns ## COG: alsE COG0036 # Protein_GI_number: 16131911 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Escherichia coli K12 # 1     231       1     231     231     473  100.0  1e-133
MKISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPL
DCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVE
AMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQAT
YEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKSEVQPHAKTA
>gi|223713531|gb|ACDM01000067.1| GENE    82     95084  -     96064   1083    326 aa, chain - ## HITS:1  COG:alsC KEGG:ns NR:ns ## COG: alsC COG1172 # Protein_GI_number: 16131912 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1     326       1     326     326     504  100.0  1e-143
MGFTTRVKSEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQS
SVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALG
AINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPV
IFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGV
VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ
VQTYYQLVVMGGLIIAAVALDRLISK
>gi|223713531|gb|ACDM01000067.1| GENE    83     96043  -     97575    175    510 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 279     494      25     222     309 72  25 1e-11
MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG
TITINNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWR
EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE
VDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRL
MVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGS
GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQ
NMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI
SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA
VFCEGRLTQILTNRDDMSEEEIMAWALPQE
>gi|223713531|gb|ACDM01000067.1| GENE    84     97702  -     98637    939    311 aa, chain - ## HITS:1  COG:alsB KEGG:ns NR:ns ## COG: alsB COG1879 # Protein_GI_number: 16131914 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1     311       1     311     311     561  100.0  1e-160
MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF
ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD
NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE
AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK
TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE
FKLVDSILVTQ
>gi|223713531|gb|ACDM01000067.1| GENE    85     98696  -     99586    571    296 aa, chain - ## HITS:1  COG:rpiR KEGG:ns NR:ns ## COG: rpiR COG1737 # Protein_GI_number: 16131915 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     296      12     307     307     588  100.0  1e-168
MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS
EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM
EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM
MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP
APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK
>gi|223713531|gb|ACDM01000067.1| GENE    86     99945  -    100394    324    149 aa, chain + ## HITS:1  COG:rpiB KEGG:ns NR:ns ## COG: rpiB COG0698 # Protein_GI_number: 16131916 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Escherichia coli K12 # 1     149       1     149     149     287  100.0  4e-78
MKKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVD
GGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMI
VDAWLGAQYEGGRHQQRVEAITAIEQRRN
>gi|223713531|gb|ACDM01000067.1| GENE    87    100463  -    100792    230    109 aa, chain + ## HITS:1  COG:no KEGG:B21_03923 NR:ns ## KEGG: B21_03923 # Name: yjdP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     109       1     109     109      79   99.0  5e-14
MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREV
SDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR
>gi|223713531|gb|ACDM01000067.1| GENE    88    100939  -    101697    628    252 aa, chain - ## HITS:1  COG:ECs5075 KEGG:ns NR:ns ## COG: ECs5075 COG1235 # Protein_GI_number: 15834329 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Escherichia coli O157:H7 # 1     252       1     252     252     516   96.0  1e-146
MSLTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL
ADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFS
HTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQ
PQVMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF
EVGFDGMEIGVA
>gi|223713531|gb|ACDM01000067.1| GENE    89    101699  -    102133    523    144 aa, chain - ## HITS:1  COG:phnO KEGG:ns NR:ns ## COG: phnO COG0454 # Protein_GI_number: 16131919 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1     144       1     144     144     285  100.0  2e-77
MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRDPNMRYHLALLDGEVVG
MIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVK
RHDAHRFYLREGYEQSHFRFTKAL
>gi|223713531|gb|ACDM01000067.1| GENE    90    102120  -    102677    478    185 aa, chain - ## HITS:1  COG:phnN KEGG:ns NR:ns ## COG: phnN COG3709 # Protein_GI_number: 16131920 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized component of phosphonate metabolism # Organism: Escherichia coli K12 # 1     185       1     185     185     358  100.0  3e-99
MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASAGSENHIALSEQEFFTR
AGQNLLALSWHANGLYYGVGVEIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV
SPEILRQRLENRGRENASEINARLARAARYTPQDCHTLNNDGSLRQSVDTLLTLIHQKEK
HHACL
>gi|223713531|gb|ACDM01000067.1| GENE    91    102677  -    103813   1143    378 aa, chain - ## HITS:1  COG:phnM KEGG:ns NR:ns ## COG: phnM COG3454 # Protein_GI_number: 16131921 # Func_class: P Inorganic ion transport and metabolism # Function: Metal-dependent hydrolase involved in phosphonate metabolism # Organism: Escherichia coli K12 # 1     378       1     378     378     742   99.0  0
MIINNVKLVLENEVVSGSLEVQNGEIRAFAESQSRLPEAMDGEGGWLLPGLIELHTDNLD
KFFTPRPKVDWPAHSAMSSHDALMVASGITTVLDAVAIGDVRDGGDRLENLEKMINAIEE
TQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLVSLMDHSPGQRQFANRKKYRE
YYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAALCRARKIALASHDDATHAHVAES
HQLGSVIAEFPTTFEAAEASRKHGMNVLMGAPNIVRGGSHSGNVAASELAQLGLLDILSS
DYYPASLLDAAFRVADDQSNRFTLPQAVKLVTKNPAQALNLQDRGVIGEGKRADLVLAHR
KDNHIHIDHVWRQGKRVF
>gi|223713531|gb|ACDM01000067.1| GENE    92    103810  -    104490    223    226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     219       1     209     245 90  29 3e-17
MINVQNVSKTFILHQQNGVRLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLP
DEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGV
PREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASL
DAKNSAAVVELIREAKTRGAAIVGIFHDEAVRNDVADRLHPMGASS
>gi|223713531|gb|ACDM01000067.1| GENE    93    104601  -    105359    376    252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 19     251      36     267     329 149  35 6e-35
MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQG
EIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGD
IRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSV
QARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHP
YTQLLVSSVLQN
>gi|223713531|gb|ACDM01000067.1| GENE    94    105356  -    106201    898    281 aa, chain - ## HITS:1  COG:phnJ KEGG:ns NR:ns ## COG: phnJ COG3627 # Protein_GI_number: 16131924 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1     281       1     281     281     575  100.0  1e-164
MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI
GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI
IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR
YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP
CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAKNQ
>gi|223713531|gb|ACDM01000067.1| GENE    95    106194  -    107258   1230    354 aa, chain - ## HITS:1  COG:phnI KEGG:ns NR:ns ## COG: phnI COG3626 # Protein_GI_number: 16131925 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1     354       1     354     354     684  100.0  0
MYVAVKGGEKAIDAAHALQESRRRGDTDLPELSVAQIEQQLNLAVDRVMTEGGIADRELA
ALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTGMRLERRISAVYKDIPGGQLLGP
TYDYTHRLLDFTLLANGEAPTLTTADSEQQPSPHVFSLLARQGLAKFEEDSGAQPDDITR
TPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRNHPFAGEIRSGYIDVSIVPEELG
FAVNVGELLMTECEMVNGFIDPPGEPPHFTRGYGLVFGMSERKAMAMALVDRALQAPEYG
EHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQQEQNHG
>gi|223713531|gb|ACDM01000067.1| GENE    96    107258  -    107842    654    194 aa, chain - ## HITS:1  COG:phnH KEGG:ns NR:ns ## COG: phnH COG3625 # Protein_GI_number: 16131926 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1     194       1     194     194     355  100.0  2e-98
MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPLNIATTSVLLTLADNDT
PVWLSTPLNNDIVNQSLRFHTNAPLVSQPEQATFAVTDEAISSEQLNALSTGTAVAPEAG
ATLILQVASLSGGRMLRLTGAGIAEERMIAPQLPECILHELTERPHPFPLGIDLILTCGE
RLLAIPRTTHVEVC
>gi|223713531|gb|ACDM01000067.1| GENE    97    107839  -    108291    424    150 aa, chain - ## HITS:1  COG:phnG KEGG:ns NR:ns ## COG: phnG COG3624 # Protein_GI_number: 16131927 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1     150       1     150     150     261   99.0  4e-70
MHADTATRQHWMSVLAHSQPAELAARLNALNITADYEVIRAAETGLVQIQARMGGTGERF
FAGDATLTRAAVRLTDGTLGYSWVQGRDKQHAERCALIDALMQQSRHFQNLSETLIAPLD
ADRMTRIAARQAEVNASRVDFFTMVRGDNA
>gi|223713531|gb|ACDM01000067.1| GENE    98    108292  -    109017    580    241 aa, chain - ## HITS:1  COG:phnF KEGG:ns NR:ns ## COG: phnF COG2188 # Protein_GI_number: 16131928 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     241       1     241     241     468  100.0  1e-132
MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRHTLRRAIDQLV
EKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPTSEKLLSVLRPASGHVADA
LGITEGENVIHLRTLRRVNGVALCLIDHYFADLTLWPTLQRFDSGSLHDFLREQTGIALR
RSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTME
H
>gi|223713531|gb|ACDM01000067.1| GENE    99    109038  -    109406    391    122 aa, chain - ## HITS:1  COG:ECs5086 KEGG:ns NR:ns ## COG: ECs5086 COG3639 # Protein_GI_number: 15834340 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Escherichia coli O157:H7 # 1     122     155     276     276     229   99.0  6e-61
MLALFIHTTGVLSKLLSEAVEAIEPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLY
RFESNVRSATVVGMVGAGGIGVTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKH
FI
>gi|223713531|gb|ACDM01000067.1| GENE   100    109256  -    109825     71    189 aa, chain - ## HITS:1  COG:phnE KEGG:ns NR:ns ## COG: phnE COG3639 # Protein_GI_number: 16131930 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Escherichia coli K12 # 1     189      18     206     206     322   99.0  3e-88
MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDGGNMATFAADFFPPDFS
QWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWWVYQPVRRLMDACRAINEM
VFAMLFVVAVGLGPFAGVLACWRCLSTPPACSPSCFPKRWKRLNPARWKAFAPPVPTSSK
RSSTACCHR
>gi|223713531|gb|ACDM01000067.1| GENE   101    109931  -    110947   1126    338 aa, chain - ## HITS:1  COG:phnD KEGG:ns NR:ns ## COG: phnD COG3221 # Protein_GI_number: 16131931 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     338       1     338     338     642  100.0  0
MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKK
LGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYW
SVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVN
AGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLS
ETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASSDLQLVPIRQLALFKEMQGVKSNKG
LNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVSKAVQ
>gi|223713531|gb|ACDM01000067.1| GENE   102    110972  -    111760    264    262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1     231       1     214     305 106  31 6e-22
MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSV
GSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRT
CFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI
ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF
DNERFDHLYRSINRVEENAKAA
>gi|223713531|gb|ACDM01000067.1| GENE   103    111893  -    112336    545    147 aa, chain - ## HITS:1  COG:phnB KEGG:ns NR:ns ## COG: phnB COG2764 # Protein_GI_number: 16131933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     147       1     147     147     295  100.0  1e-80
MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDSAENCPSGMQFPDTAIA
HANVRIAGSDIMMSDAMPSGKASYSGFTLVLDSQQVEEGKRWFDNLAANGKIEMAWQETF
WAHGFGKVTDKFGVPWMINVVKQQPTQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:17:31 2011
 Seq name: gi|223713530|gb|ACDM01000068.1| Escherichia sp. 4_1_40B cont1.68, whole genome shotgun sequence 
 Length of sequence - 36245 bp
 Number of predicted genes - 30, with homology - 29
 Number of transcription units - 20, operones - 8 average op.length -  2.2
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       689 -       748    8.7 
     2     2 Op  1     .       +    CDS        772 -      3000   1878  ## COG0699 Predicted GTPases (dynamin-related)
     3     2 Op  2     .       +    CDS       2997 -      3875    478  ## JW5729 conserved hypothetical protein
                               +    Prom      3898 -      3957    2.9 
     4     3 Tu  1     .       +    CDS       4139 -      5641   1686  ## COG0477 Permeases of the major facilitator superfamily
                               +    Prom      5672 -      5731    1.6 
     5     4 Tu  1     .       +    CDS       5753 -      5842    115  ## 
     6     5 Op  1  40/0.000   -    CDS       5818 -      6909    893  ## COG0642 Signal transduction histidine kinase
     7     5 Op  2   3/1.000   -    CDS       6919 -      7587    980  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
     8     5 Op  3   3/1.000   -    CDS       7584 -      9227   1432  ## COG2194 Predicted membrane-associated, metal-dependent hydrolase
                               -    Term      9262 -      9309    8.2 
     9     6 Op  1     .       -    CDS       9331 -     10668   1476  ## COG0531 Amino acid transporters
                               -    Prom     10709 -     10768    3.9 
    10     6 Op  2     .       -    CDS      10805 -     11566    372  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     11632 -     11691    5.7 
                               -    Term     11742 -     11773    1.1 
    11     7 Tu  1     .       -    CDS      11891 -     14158   2249  ## COG1982 Arginine/lysine/ornithine decarboxylases
                               -    Prom     14280 -     14339    7.2 
    12     8 Tu  1     .       -    CDS      14357 -     15265    804  ## COG2207 AraC-type DNA-binding domain-containing proteins
    13     9 Tu  1   4/0.333   +    CDS      15551 -     16903   1237  ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases
    14    10 Tu  1     .       +    CDS      17018 -     18427   1053  ## COG2211 Na+/melibiose symporter and related transporters
                               +    Term     18450 -     18491    6.1 
    15    11 Tu  1     .       -    CDS      18566 -     19195    567  ## COG3647 Predicted membrane protein
                               -    Prom     19218 -     19277    2.5 
    16    12 Op  1   4/0.333   -    CDS      19318 -     20964    503  ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase
                               -    Term     20991 -     21032    6.0 
    17    12 Op  2   3/1.000   -    CDS      21042 -     22382   1488  ## COG2704 Anaerobic C4-dicarboxylate transporter
    18    13 Op  1   9/0.000   -    CDS      22953 -     23672    278  ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9
    19    13 Op  2     .       -    CDS      23669 -     25300   1423  ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism
                               -    Prom     25324 -     25383    2.9 
    20    14 Op  1     .       +    CDS      25292 -     25426     66  ## EcSMS35_4593 hypothetical protein
    21    14 Op  2   5/0.333   +    CDS      25481 -     25711    231  ## COG3592 Uncharacterized conserved protein
    22    14 Op  3     .       +    CDS      25723 -     25995    354  ## COG2388 Predicted acetyltransferase
    23    15 Tu  1     .       -    CDS      25925 -     26116    111  ## gi|293407852|ref|ZP_06651692.1| predicted protein
                               -    Prom     26212 -     26271    3.3 
                               +    Prom     26074 -     26133    1.7 
    24    16 Op  1     .       +    CDS      26222 -     26518    212  ## ECUMN_4661 hypothetical protein
    25    16 Op  2     .       +    CDS      26546 -     26719    184  ## ECH74115_5644 hypothetical protein
                               +    Term     26798 -     26833    6.7 
                               -    Term     26786 -     26821    6.7 
    26    17 Tu  1     .       -    CDS      26838 -     28355   1672  ## COG1190 Lysyl-tRNA synthetase (class II)
                               -    Prom     28438 -     28497    6.5 
    27    18 Tu  1   4/0.333   -    CDS      28592 -     30049   1393  ## COG3104 Dipeptide/tripeptide permease
                               -    Term     30057 -     30100    6.3 
    28    19 Op  1  10/0.000   -    CDS      30108 -     32255   2496  ## COG1982 Arginine/lysine/ornithine decarboxylases
                               -    Term     32264 -     32319    3.0 
    29    19 Op  2   4/0.333   -    CDS      32335 -     33669   1496  ## COG0531 Amino acid transporters
                               -    Term     33994 -     34028   -1.0 
    30    20 Tu  1     .       -    CDS      34034 -     35572    792  ## COG3710 DNA-binding winged-HTH domains
                               -    Prom     35598 -     35657    3.8 
Predicted protein(s)
>gi|223713530|gb|ACDM01000068.1| GENE     1        36  -       371    456    111 aa, chain - ## HITS:1  COG:ECs5090 KEGG:ns NR:ns ## COG: ECs5090 COG2824 # Protein_GI_number: 15834344 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Escherichia coli O157:H7 # 1     111       1     111     111     216  100.0  8e-57
MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI
IKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN
>gi|223713530|gb|ACDM01000068.1| GENE     2       772  -      3000   1878    742 aa, chain + ## HITS:1  COG:yjdA_1 KEGG:ns NR:ns ## COG: yjdA_1 COG0699 # Protein_GI_number: 16131935 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Escherichia coli K12 # 1     275       1     275     275     512  100.0  1e-145
MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLALPWSQPNIAERHAMLNN
ELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVL
HFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPI
FHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGP
NEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD
QQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLPPPEQQ
RWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALR
SAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQIEESLQLLQLNQAQVSGEIKHEI
ELALTSANHFLRQQQDALKVQLAALFQDDSEPLSEIRTRCETLLQTAQNTISRDFTLRFA
ELESTLCRVLTDVIRPIEQQVKMELSESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQE
ATDEQSTRLGVVRETFSRWLNQPDWGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKV
LAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHG
WIYTDAQLLRDDIQTLFTAERY
>gi|223713530|gb|ACDM01000068.1| GENE     3      2997  -      3875    478    292 aa, chain + ## HITS:1  COG:no KEGG:JW5729 NR:ns ## KEGG: JW5729 # Name: yjcZ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     292       1     292     292     558  100.0  1e-158
MTKTLLDGPGRVLESVYPRFLVDLAQGDDARLPQAHQQQFRERLMQELLSRVQLQTWTNG
GMLNAPLSLRLTLVEKLASMLDPGHLALTQIAQHLALLQKMDHRQHSAFPELPQQIAALY
EWFSARCRWKEKALTQRGLLVQAGDQSEQIFTRWRAGAYNAWSLPGRCFIVLEELRWGAF
GDACRLGSPQAVALLLGDLLEKATQHLAESINAAPTTRHYYHQWFASSTVPTGGEHADFL
SWLGKWTTADKQPVCWSVTQRWQTVALGMPRLCSAQRLAGAMLEEIFSVNLA
>gi|223713530|gb|ACDM01000068.1| GENE     4      4139  -      5641   1686    500 aa, chain + ## HITS:1  COG:ECs5093 KEGG:ns NR:ns ## COG: ECs5093 COG0477 # Protein_GI_number: 15834347 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1     500       1     500     500     977  100.0  0
MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGAD
PSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYD
TIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA
GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDRE
GLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLI
IIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLM
LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMP
AYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHE
IADLQAKRTRLVQQHPRIDE
>gi|223713530|gb|ACDM01000068.1| GENE     5      5753  -      5842    115     29 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MKNRVYESLTTVFSVLVVSSFLYIWFATY
>gi|223713530|gb|ACDM01000068.1| GENE     6      5818  -      6909    893    363 aa, chain - ## HITS:1  COG:basS KEGG:ns NR:ns ## COG: basS COG0642 # Protein_GI_number: 16131938 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     363       1     363     363     681  100.0  0
MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMR
EIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTADNLTPIAIHSATL
EIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLV
ARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPE
SAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESK
CGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVA
NQI
>gi|223713530|gb|ACDM01000068.1| GENE     7      6919  -      7587    980    222 aa, chain - ## HITS:1  COG:ECs5095 KEGG:ns NR:ns ## COG: ECs5095 COG0745 # Protein_GI_number: 15834349 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     222       1     222     222     432  100.0  1e-121
MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL
HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN
NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN
WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN
>gi|223713530|gb|ACDM01000068.1| GENE     8      7584  -      9227   1432    547 aa, chain - ## HITS:1  COG:ZyjdB KEGG:ns NR:ns ## COG: ZyjdB COG2194 # Protein_GI_number: 15804706 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli O157:H7 EDL933 # 1     547      11     557     557    1083  100.0  0
MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDSLHNVLVFLSMPVVAFS
VINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDRSMIANIIDTTPAESYALM
TPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGANILVSVLLILLVAALFYKDYA
SLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVRIGEDAHRNPLMQNEKRKNLTIL
IVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTASCGTATAVSVPCMFSDMPREHYKE
ELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACDRVPHQNVTALNLPDQCINGECYDEVL
FHGLEEYINNLQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCDTNEIQTCTKEQLVNT
YDNTLVYVDYIVDKAINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLPYAIAPDSQK
QVPMLLWLSEDYQKRYQVDQNCLQKQAQTQHYSQDNLFSTLLGLTGVETKYYQAADDILQ
TCRRVSE
>gi|223713530|gb|ACDM01000068.1| GENE     9      9331  -     10668   1476    445 aa, chain - ## HITS:1  COG:ECs5097 KEGG:ns NR:ns ## COG: ECs5097 COG0531 # Protein_GI_number: 15834351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1     445       1     445     445     780  100.0  0
MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVY
AKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK
DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA
AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV
LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT
AKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF
TLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVI
TAMYALNYNRLHKNPYPLDAPISKD
>gi|223713530|gb|ACDM01000068.1| GENE    10     10805  -     11566    372    253 aa, chain - ## HITS:1  COG:adiY KEGG:ns NR:ns ## COG: adiY COG2207 # Protein_GI_number: 16131942 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     253       1     253     253     493  100.0  1e-139
MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH
DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA
LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK
KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP
LHYVSQHRERTVA
>gi|223713530|gb|ACDM01000068.1| GENE    11     11891  -     14158   2249    755 aa, chain - ## HITS:1  COG:adiA KEGG:ns NR:ns ## COG: adiA COG1982 # Protein_GI_number: 16131943 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1     755       2     756     756    1602  100.0  0
MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFS
YQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTA
DFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDY
YGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA
CMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKIS
ESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY
ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHAT
TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWN
KEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILA
PGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS
FKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPV
AEVTPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSY
LRSLQSWDHHFPGFEHETEGTEIIDGIYHVMCVKA
>gi|223713530|gb|ACDM01000068.1| GENE    12     14357  -     15265    804    302 aa, chain - ## HITS:1  COG:melR KEGG:ns NR:ns ## COG: melR COG2207 # Protein_GI_number: 16131944 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     302       1     302     302     610  100.0  1e-174
MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWHGQVEVNVPFDGDVEYL
INNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHLFLSWPLDKDLINHVTHGM
VIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLMLKRFSLSGWEPILVNKTSRT
HKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI
TAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRKLSQQRRQTF
PG
>gi|223713530|gb|ACDM01000068.1| GENE    13     15551  -     16903   1237    450 aa, chain + ## HITS:1  COG:melA KEGG:ns NR:ns ## COG: melA COG1486 # Protein_GI_number: 16131945 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1     450       2     451     451     959  100.0  0
MSAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAG
ASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIM
RALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAE
ELARDLNIDPATLRYRCAGINHMAFYLELERKTADGSYVNLYPELLAAYEAGQAPKPNIH
GNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIERYKVPLDEYPKRCVE
QLANWHKELEEYKKASRIDIKPSREYASTIMNAIWTGEPSVIYGNVRNDGLIDNLPQGCC
VEVACLVDANGIQPTKVGTLPSHLAALMQTNINVQTLLTEAILTENRDRVYHAAMMDPHT
AAVLGIDEIYALVDDLIAAHGDWLPGWLHR
>gi|223713530|gb|ACDM01000068.1| GENE    14     17018  -     18427   1053    469 aa, chain + ## HITS:1  COG:melB KEGG:ns NR:ns ## COG: melB COG2211 # Protein_GI_number: 16131946 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1     469       1     469     469     855  100.0  0
MTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGW
IVNATRSRWGKFKPWILIGTLANSVILFLLFSAHLFEGTTQIVFVCVTYILWGMTYTIMD
IPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTLPFVNYVGGGDRGFGFQMFTL
VLIAFFIVSTIITLRNVHEVFSSDNQPSAEGSHLTLKAIVALIYKNDQLSCLLGMALAYN
VASNIITGFAIYYFSYVIGDADLFPYYLSYAGAANLVTLVFFPRLVKSLSRRILWAGASI
LPVLSCGVLLLMALMSYHNVVLIVIAGILLNVGTALFWVLQVIMVADIVDYGEYKLHVRC
ESIAYSVQTMVVKGGSAFAAFFIAVVLGMIGYVPNVEQSTQALLGMQFIMIALPTLFFMV
TLILYFRFYRLNGDTLRRIQIHLLDKYRKVPPEPVHADIPVGAVSDVKA
>gi|223713530|gb|ACDM01000068.1| GENE    15     18566  -     19195    567    209 aa, chain - ## HITS:1  COG:yjdF KEGG:ns NR:ns ## COG: yjdF COG3647 # Protein_GI_number: 16131947 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     209       1     209     209     392  100.0  1e-109
MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPL
LYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREIL
VRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMF
CALLGALTTVIFLARFHCRQLRRFGLITG
>gi|223713530|gb|ACDM01000068.1| GENE    16     19318  -     20964    503    548 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 69     531      31     482     508 198  31 4e-50
MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEPEALTLLAQQAFHDASF
MLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQR
VWTGGGDEETLSKGVYNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKF
LCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAET
NLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQELLEEAQKLGLGAQFGGKYFAHDIRV
IRLPRHGASCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVK
VDLNRPMKEILAQLSQYPVSTRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIY
YAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGF
YLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIVN
KQCANCTK
>gi|223713530|gb|ACDM01000068.1| GENE    17     21042  -     22382   1488    446 aa, chain - ## HITS:1  COG:ECs5105 KEGG:ns NR:ns ## COG: ECs5105 COG2704 # Protein_GI_number: 15834359 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1     446       1     446     446     743  100.0  0
MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVA
ASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDV
AIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIP
STLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMW
IFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEV
FRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAA
ALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHS
FILPGLIGVSVSCVFGWIFAAMYGFL
>gi|223713530|gb|ACDM01000068.1| GENE    18     22953  -     23672    278    239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 2     225       1     222     226 111  36 5e-24
MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ
KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW
RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS
TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ
>gi|223713530|gb|ACDM01000068.1| GENE    19     23669  -     25300   1423    543 aa, chain - ## HITS:1  COG:ECs5107 KEGG:ns NR:ns ## COG: ECs5107 COG3290 # Protein_GI_number: 15834361 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Escherichia coli O157:H7 # 1     543       1     543     543    1072  100.0  0
MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRDGLANKALAVA
RTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEAQRIGQPF
KGDDILKALNGEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQINDSR
WSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEISTLFEQRQAMLQSIKEGVVAVDD
RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRL
LLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRLDGLVNYADALRERSHEFMNKLHVILG
LLHLKSYKQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLISKINRATDLGHTLILNSE
SQLPDSGSEDQVATLITTLGNLIENALEALGPEPGGEISVTLHYRHGWLHCEVNDDGPGI
APDKIDHIFDKGVSTKGSERGVGLALVKQQVENLGGSIAVESEPGIFTQFFVQIPWDGER
SNR
>gi|223713530|gb|ACDM01000068.1| GENE    20     25292  -     25426     66     44 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_4593 NR:ns ## KEGG: EcSMS35_4593 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      44       1      44      44      79  100.0  3e-14
MSHQLPCVTNFLSIISDEAGNSKGVRMIGYIGEETLATETASAV
>gi|223713530|gb|ACDM01000068.1| GENE    21     25481  -     25711    231     76 aa, chain + ## HITS:1  COG:ECs5108 KEGG:ns NR:ns ## COG: ECs5108 COG3592 # Protein_GI_number: 15834362 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1      76       1      76      76     162  100.0  1e-40
MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVV
KVIDTCPSGALKYRHK
>gi|223713530|gb|ACDM01000068.1| GENE    22     25723  -     25995    354     90 aa, chain + ## HITS:1  COG:yjdJ KEGG:ns NR:ns ## COG: yjdJ COG2388 # Protein_GI_number: 16131953 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli K12 # 1      90       1      90      90     163  100.0  7e-41
MEIREGHNKFYINDKQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEK
MRREKRKIIPLCPFAKHEFDKTREYDDIRS
>gi|223713530|gb|ACDM01000068.1| GENE    23     25925  -     26116    111     63 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|293407852|ref|ZP_06651692.1| ## NR: gi|293407852|ref|ZP_06651692.1| predicted protein [Escherichia coli B354] # 1      63       1      63      63     104   85.0  2e-21
MTWDKKTRSLPILCASPYPSDALLHHIAERMKNIVTLYSPINCEYHHTPAFYQIHVSQMG
IMG
>gi|223713530|gb|ACDM01000068.1| GENE    24     26222  -     26518    212     98 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_4661 NR:ns ## KEGG: ECUMN_4661 # Name: yjdK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      98       1      98      98     172  100.0  3e-42
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTS
LAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK
>gi|223713530|gb|ACDM01000068.1| GENE    25     26546  -     26719    184     57 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_5644 NR:ns ## KEGG: ECH74115_5644 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1      57       1      57      57      68  100.0  6e-11
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
>gi|223713530|gb|ACDM01000068.1| GENE    26     26838  -     28355   1672    505 aa, chain - ## HITS:1  COG:ECs5111 KEGG:ns NR:ns ## COG: ECs5111 COG1190 # Protein_GI_number: 15834365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Escherichia coli O157:H7 # 1     505       1     505     505     998   99.0  0
MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQE
LESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD
IIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKS
RQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP
ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT
LAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGI
TVEKSWGLGRIVTEIFDEVAEVHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG
REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGID
RMIMLFTNSHTIRDVILFPAMRPQK
>gi|223713530|gb|ACDM01000068.1| GENE    27     28592  -     30049   1393    485 aa, chain - ## HITS:1  COG:yjdL KEGG:ns NR:ns ## COG: yjdL COG3104 # Protein_GI_number: 16131956 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1     485       1     485     485     889  100.0  0
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVT
PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSLYLALAIIICGYGLFKSNI
SCLLGELYDENDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIG
LLIFLSGHRHFQSTRSMDKKALTSVKFALPVWSWLVVMLCLAPVFFTLLLENDWSGYLLA
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQA
FNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSTLRVWLKFAFGLLLMACGFMLLA
FDARHAAADGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVA
NWLAGVVAQQTTESQISGMAIAAYQRFFSQMGEWTLACVAIIVVLAFATRFLFSTPTNMI
QESND
>gi|223713530|gb|ACDM01000068.1| GENE    28     30108  -     32255   2496    715 aa, chain - ## HITS:1  COG:ECs5113 KEGG:ns NR:ns ## COG: ECs5113 COG1982 # Protein_GI_number: 15834367 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli O157:H7 # 1     715       1     715     715    1494  100.0  0
MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWD
KYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQT
TDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDI
SISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILI
DRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVH
AVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIY
ETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNA
GKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID
NEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIG
IDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHH
NLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVM
PGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKEESKK
>gi|223713530|gb|ACDM01000068.1| GENE    29     32335  -     33669   1496    444 aa, chain - ## HITS:1  COG:ECs5114 KEGG:ns NR:ns ## COG: ECs5114 COG0531 # Protein_GI_number: 15834368 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1     444       1     444     444     761  100.0  0
MSSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWIISIIGAMSLAYVYARL
ATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPVP
AGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVMTAIVGWHWFDAATYAANWNT
ADTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIVYIAATQ
VLSGMYPSSVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRA
ANDGNFPKVYGEVDSNGIPKKGLLLAAVKMTALMILITLMNSAGGKASDLFGELTGIAVL
LTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMGASSFELAGTFIVSLIIL
MFYARKMHERQSHSMDNHTASNAH
>gi|223713530|gb|ACDM01000068.1| GENE    30     34034  -     35572    792    512 aa, chain - ## HITS:1  COG:cadC_1 KEGG:ns NR:ns ## COG: cadC_1 COG3710 # Protein_GI_number: 16131959 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Escherichia coli K12 # 1     180       1     180     180     328  100.0  2e-89
MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR
SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP
PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS
LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH
DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL
AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE
LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY
QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR
PGANTLYWIENGIFQTSVPYVVPYLDKFLASE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:17:57 2011
 Seq name: gi|223713529|gb|ACDM01000069.1| Escherichia sp. 4_1_40B cont1.69, whole genome shotgun sequence 
 Length of sequence - 29216 bp
 Number of predicted genes - 31, with homology - 30
 Number of transcription units - 13, operones - 7 average op.length -  3.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       -    CDS          2 -       341    270  ## EC55989_3367 hypothetical protein
     2     1 Op  2     .       -    CDS        338 -       715    318  ## EC55989_3366 toxin of the YeeV-YeeU toxin-antitoxin system
     3     1 Op  3     .       -    CDS        762 -      1139    177  ## EC55989_3365 antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage
     4     1 Op  4     .       -    CDS       1219 -      1440    359  ## S3202 hypothetical protein
                               -    Prom      1604 -      1663    5.1 
     5     2 Op  1     .       +    CDS       1648 -      2244    392  ## EC55989_3330 hypothetical protein
     6     2 Op  2     .       +    CDS       2264 -      2941    369  ## EC55989_3328 Conserved hypothetical protein. putative exported protein
     7     2 Op  3     .       +    CDS       2973 -      3239    137  ## COG4104 Uncharacterized conserved protein
     8     2 Op  4     .       +    CDS       3297 -      4391    511  ## EC55989_3326 hypothetical protein
     9     2 Op  5     .       +    CDS       4384 -      6576    848  ## COG3523 Uncharacterized protein conserved in bacteria
    10     2 Op  6   1/0.000   +    CDS       6557 -      7093    351  ## COG3521 Uncharacterized protein conserved in bacteria
    11     2 Op  7     .       +    CDS       7096 -      7527    393  ## COG3518 Uncharacterized protein conserved in bacteria
                               +    Prom      7551 -      7610    4.2 
    12     3 Tu  1     .       +    CDS       7684 -      8085    109  ## EC55989_3318 hypothetical protein
                               +    Prom      8127 -      8186    2.1 
    13     4 Tu  1     .       +    CDS       8241 -      8741    263  ## EC55989_3317 hypothetical protein
                               +    Term      8774 -      8815    0.2 
                               +    Prom      9017 -      9076    4.5 
    14     5 Op  1   6/0.000   +    CDS       9268 -      9744    234  ## COG3516 Uncharacterized protein conserved in bacteria
    15     5 Op  2     .       +    CDS       9747 -     11225    607  ## COG3517 Uncharacterized protein conserved in bacteria
                               +    Term     11258 -     11286   -0.9 
                               +    Prom     11442 -     11501    5.3 
    16     6 Op  1     .       +    CDS      11571 -     11741    116  ## EC55989_3296 hypothetical protein
    17     6 Op  2     .       +    CDS      11751 -     12173    195  ## EC55989_3295 hypothetical protein
    18     6 Op  3   9/0.000   +    CDS      12166 -     13968    347  ## COG3519 Uncharacterized protein conserved in bacteria
    19     6 Op  4     .       +    CDS      13959 -     14891    306  ## COG3520 Uncharacterized protein conserved in bacteria
                               +    Prom     15298 -     15357    3.8 
    20     7 Op  1     .       +    CDS      15471 -     16886    365  ## COG3501 Uncharacterized protein conserved in bacteria
    21     7 Op  2     .       +    CDS      16897 -     17364    180  ## EC55989_3291 hypothetical protein
    22     7 Op  3     .       +    CDS      17374 -     17673     84  ## COG4104 Uncharacterized conserved protein
    23     7 Op  4     .       +    CDS      17677 -     18753    331  ## COG3515 Uncharacterized protein conserved in bacteria
                               +    Prom     18783 -     18842    4.4 
    24     8 Tu  1     .       +    CDS      19004 -     19312    245  ## EC55989_3288 conserved hypothetical protein; putative exported protein
                               +    Prom     19492 -     19551    3.8 
    25     9 Tu  1     .       +    CDS      19739 -     20743    -23  ## COG3522 Uncharacterized protein conserved in bacteria
                               +    Term     20982 -     21028    4.3 
                               +    Prom     20986 -     21045    5.7 
    26    10 Tu  1     .       +    CDS      21082 -     21672    105  ## COG3455 Uncharacterized protein conserved in bacteria
                               -    Term     22202 -     22226   -1.0 
    27    11 Tu  1     .       -    CDS      22415 -     22630    125  ## 
                               +    Prom     22976 -     23035    4.3 
    28    12 Op  1     .       +    CDS      23109 -     25082    668  ## EC55989_3284 conserved hypothetical protein; putative exported protein
    29    12 Op  2     .       +    CDS      25086 -     27635   1142  ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8
                               +    Term     27692 -     27740    1.4 
                               +    Prom     28123 -     28182    1.7 
    30    13 Op  1  11/0.000   +    CDS      28423 -     28641    193  ## COG2801 Transposase and inactivated derivatives
    31    13 Op  2     .       +    CDS      28657 -     29043    377  ## COG2801 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713529|gb|ACDM01000069.1| GENE     1         2  -       341    270    113 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3367 NR:ns ## KEGG: EC55989_3367 # Name: yeeW # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     113       1     113     140     196  100.0  2e-49
MKLALTLEADSINAQALNMGRIVVDVDGIELAELINKVAENGYSLRVVNERDATETPATS
ASPHQLPEDNTVIQSVMPLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDS
>gi|223713529|gb|ACDM01000069.1| GENE     2       338  -       715    318    125 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3366 NR:ns ## KEGG: EC55989_3366 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system # Organism: E.coli_55989 # Pathway: not_defined # 1     125      36     160     160     257  100.0  7e-68
MNTLPDTHVREASGCPSPITIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLC
DAVNFLVEKYALVRTDQPGFSAGAPSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH
PGAKQ
>gi|223713529|gb|ACDM01000069.1| GENE     3       762  -      1139    177    125 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3365 NR:ns ## KEGG: EC55989_3365 # Name: yeeU # Def: antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_55989 # Pathway: not_defined # 1     125       1     125     125     251  100.0  4e-66
MSDTLPGTTPPDDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAY
HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA
PATTV
>gi|223713529|gb|ACDM01000069.1| GENE     4      1219  -      1440    359     73 aa, chain - ## HITS:1  COG:no KEGG:S3202 NR:ns ## KEGG: S3202 # Name: yeeT # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1      73       1      73      73     149  100.0  4e-35
MKIITRGEAMRIHRQHPASRLFPFCTGKYRWHGSTDTYTGREVQDIPGVLAVFAERRKDS
FGPYVRLMSVTLN
>gi|223713529|gb|ACDM01000069.1| GENE     5      1648  -      2244    392    198 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3330 NR:ns ## KEGG: EC55989_3330 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     198     363     560     560     422  100.0  1e-117
MTLPALKHILPHGKLTTKIRSIGVNNSNQRRAGVIQKQVGAAVFFERMAVPNDWANVCLR
VMLDAAQEAGVLFEPIRQTNTELQLPSELIFLADKAIAQGKAVRLGQEPQAFTEEELYII
GKYTHCSANWNIESDGNLWVDPTTGEIFIHRFGPKGNKAFVFPNKPNDRWIRSVWYMDDQ
QRLNDNAVKNTKVMMSGV
>gi|223713529|gb|ACDM01000069.1| GENE     6      2264  -      2941    369    225 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3328 NR:ns ## KEGG: EC55989_3328 # Name: not_defined # Def: Conserved hypothetical protein. putative exported protein # Organism: E.coli_55989 # Pathway: not_defined # 1     225       1     225     225     451   99.0  1e-125
MTRDKIIFIAPLLALLTGCNSVSSRYADLDKTEWGYKKLPYDEWKFLFIYPKALPALATQ
ALMVDGEGYKTTYQYLDNTEPSQVSVGRWNDHLGATESYYNKGKALPLMLRFCWDSIIDK
KSYETLIFFKKGTWEQMVTPYADNRWNETYYRSTMIIGLAPEGKVRVWLGDRGNPVVPQL
DAKITTVSGDKMKMCKGVTKHPDGYVYYGDTPDFIKGKIYPYGNW
>gi|223713529|gb|ACDM01000069.1| GENE     7      2973  -      3239    137     88 aa, chain + ## HITS:1  COG:RSp0765 KEGG:ns NR:ns ## COG: RSp0765 COG4104 # Protein_GI_number: 17548986 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1      81       1      82      89      63   48.0  1e-10
MSKGFVLLGDNTTHGGKVISASSTMIVDGKKVALVGDMVSCPVSGHGTNPIVEGSPEWIS
DGRAVVIDGCKCLCGCKVISSAPECAIG
>gi|223713529|gb|ACDM01000069.1| GENE     8      3297  -      4391    511    364 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3326 NR:ns ## KEGG: EC55989_3326 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     364      19     382     382     743  100.0  0
MMLWFMTGAFMAVVGALLFIIRASEYVKALNNFSIWWLALTPPGCWFFLFCLRHWQWSNQ
MDEHLFLKKEGEYAQKQWESWAERYLVITASCVYLPDKITVATLCDELPLQYGLVKKIDY
LSDSGHKVEASLRVLLREITDKFCQLPAALPVNVTLITDQPDSEIRSAFVSAWEALFPQR
VVPDNIEVTPDFSMGWVDERLKQPVLTVDLILVIQLNGGNTYSDGLAALLLTSDDVAQKY
NLSHSARLLRPMSLDINKFNDEFTLFLETQTAACRTARVLGDCYHWEKIAAPLMTIGNQY
GAGWEPSGRMLLEKWCGIPGPAAPWLLTALAADLVCLGNDSLLTLFSSGEEHFISTVTSG
NQNE
>gi|223713529|gb|ACDM01000069.1| GENE     9      4384  -      6576    848    730 aa, chain + ## HITS:1  COG:YPO1482 KEGG:ns NR:ns ## COG: YPO1482 COG3523 # Protein_GI_number: 16121754 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 22     622      27     624    1140     279   32.0  1e-74
MNKLACLSGRFGRPGIVFIGVAALWWLITRYGAYLGAETRRDQILLLILLSLGVLFVCYL
PVMKKYVQELTYRRRARKEQRLPDDEERLAQTPPRYVTVQDIRHTLRRQYGRFWGRKIRI
LLITGTASEVELLTPGLTEQFWQEEQGTLLLWGGDPSQPENADWLAALRRLRYRPADGIV
WVTSGLSETLSAPLTEDALDRVSRAVSSCCERLGWRLPLYVWSLQESPDERGRITQPVGC
LLPAECSSDKLKAQLQAMLPGLVAQGIQQICCAPRYYFLLSLAERFRRNIDAVVEPLSVL
LRPYRQLLLAGIVFSPATVGGERSVRHRWRMDNRWEALPETVQQLPVRLQPSRTGHNWRR
SLAVMAAILMMAQGTGMVVSFLANRSLVAEVQEQIRPAQNQQLSPAERLQALLNLQKSLA
RLQYREEHGAPWYLRAGMNQNADLLAVVMPLYAQNAHLLLRDAAAAHLEQQLRTFIRLPP
DSPQRGKMAKAAYDQLRLYLMLAQPQHMEPAWFSRTLMREWPQRDGVSAVFWQANGPTLL
AYYASGIITHPQWKLTADEELVSQSRTLLLRHLGTQNSDAMLYQKMLARVTMRVHHPVSL
KSRPVMGDHATDVNGQVLLQLSTQTGSEVQGWLPGGHLYSDLLALLHVYLGSRLDVRLQL
CVERSLLPDARLSCRPAAGSPQLGRTAVMRTQAKIATSAARVMTISLGRYQRVQEHYQRK
ETQENGDYRW
>gi|223713529|gb|ACDM01000069.1| GENE    10      6557  -      7093    351    178 aa, chain + ## HITS:1  COG:YPO1487 KEGG:ns NR:ns ## COG: YPO1487 COG3521 # Protein_GI_number: 16121760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 21     172       3     157     162     155   50.0  3e-38
MAIIAGKAGYGLIIALFSLSLSGCGLTQRVADGTVSATKSLFYRQIKTLHLDIRAREAIN
TSAAGIPLSVVVRIYQLKDNRSFDSADYQALFTGDNEILAGDIIAQKDVWLQPGGSVAVD
MPLDDAAKFTGVAAMFLEPDQKKNTWRVVLGRDELEPDTPRLIEVSGNTLTLLPVKDK
>gi|223713529|gb|ACDM01000069.1| GENE    11      7096  -      7527    393    143 aa, chain + ## HITS:1  COG:YPO1488 KEGG:ns NR:ns ## COG: YPO1488 COG3518 # Protein_GI_number: 16121761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 4     141       7     144     150     182   71.0  1e-46
MPRPSLYEILYGNFTGGLELNQVGEEEQVILSVLDNMQRILNTRAGSLKHLPDYGLPDIT
TILQGMPGTAHQLMRVLSDVLLKYEPRIKRVDVTMQEQTQPGELHYVIDAELKDAGLVRY
GTTFIPEGRVLLRHLKQQRYVQT
>gi|223713529|gb|ACDM01000069.1| GENE    12      7684  -      8085    109    133 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3318 NR:ns ## KEGG: EC55989_3318 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     133       5     137     137     245  100.0  3e-64
MKKIIFFLFVGLLFSVQADAARGRKPCSGAKGGISHCTSDGRFVCNDGSLSQSKRLCSGY
GVAPGKRQVKSPVTTKPVQKEKSAAVRKVSQPSVAEKNEAVPVTEPRNPTCAPLYMASKP
GFTHLPICSGNQY
>gi|223713529|gb|ACDM01000069.1| GENE    13      8241  -      8741    263    166 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3317 NR:ns ## KEGG: EC55989_3317 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 27     160       1     134     388     247   99.0  9e-65
MAGGKKDDNAAGFVLILVCVILWGIYVAVRALINLNERFIDAVSNPAGIIGLFFGLLTVF
AILLRFFIYRRLRKKTAAFEQAVSELVQRERGFNETVNAAIARGIRQEKEQLARRREEFH
TARQKASRAMQRIVDSAWKFKAKTLLAGVTINNWQSKYDQQSVLAT
>gi|223713529|gb|ACDM01000069.1| GENE    14      9268  -      9744    234    158 aa, chain + ## HITS:1  COG:PA2365 KEGG:ns NR:ns ## COG: PA2365 COG3516 # Protein_GI_number: 15597561 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 3     152       4     157     181     132   48.0  3e-31
MSNTQHKLDKTRPPRVQITYDVETGDAETAKELPLVIGVLGEYSSSEKPLRERKFISIDK
DNFDEVMASMSPTAHFMVDSVIPGNEGKLDVELRFSCKDDFSPDNVIQQVECLRKLSELR
LHLCDLRNRAASNEKLKEKLQELLVTTNGNPENDESKE
>gi|223713529|gb|ACDM01000069.1| GENE    15      9747  -     11225    607    492 aa, chain + ## HITS:1  COG:RSp0744 KEGG:ns NR:ns ## COG: RSp0744 COG3517 # Protein_GI_number: 17548965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 20     488      22     491     496     535   53.0  1e-152
MTVASTLGLNETQYATDDCLEEIINNTRAVRQDSEKTRFKLQINNFLAEVASGSLVINSD
LIGSIEKRIADIDKLMSEQLSLIMHATEFQKIESAWTGLYKLVQASVTENVKYTVLHCTK
KELLKDFKSASDFDQSVLFKNIYESEYGTFGGTPYSAFVGDFYFDNTPQDIDLLEHISHV
AASAHAPFLSAIAPGMLSMSSFSELPYPRDLAKLFETTDYARWRSFRQTDDSRYVGLTLP
QSLGRIPYGMKTIPAETFNFEEHISEDNSGKDYLWVNTAFELACRIVDAFEEYGWCAAIR
GVEGGGLVKSLPAYNYVSHTGERLLQCPTEVAISDRREKELSDLGFIPLVYCKGTDFAAF
FAVQSVNKARLYNTDQANANAKLSSQLQYILATSRFAHYLKVIVRDKVGSFMSRTECQTY
LQNWIMQYVVASDNAGQETKARYPLREASVEVIEVPGSPGNYRAIAWIKPHFQLEGLSMS
LRLVADLPSSVS
>gi|223713529|gb|ACDM01000069.1| GENE    16     11571  -     11741    116     56 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3296 NR:ns ## KEGG: EC55989_3296 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      56     113     168     168     111  100.0  8e-24
MHNMLLAHDNDSNLILELSFTPEESVSIEMNIPSDDGKSTEKLGPMTYNLYKEALV
>gi|223713529|gb|ACDM01000069.1| GENE    17     11751  -     12173    195    140 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3295 NR:ns ## KEGG: EC55989_3295 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     140       1     140     140     247  100.0  8e-65
MHSFLQFLRDDNPGSLEDHLNFVPSDDLKYELGMLLSSRPLYLETDELPFVSSSVLNYGI
KSSVYVVSAGEHSDSVNDEISSRILMMLQRYESRLEEPVVEYLSSDDNYSFFSVTALFFM
DMVRLCIKWDKNSGEFSLDE
>gi|223713529|gb|ACDM01000069.1| GENE    18     12166  -     13968    347    600 aa, chain + ## HITS:1  COG:RSp0747 KEGG:ns NR:ns ## COG: RSp0747 COG3519 # Protein_GI_number: 17548968 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1     579       1     595     616     264   31.0  4e-70
MNKLLSYYQKELAFLRKQGIEFAKKYPKVARRLGYNQGGSEDPHVQRLTESFAFLSSKIH
QRLDEDLPELMEALLRNLAPQFLYNYPSSCIVSFEPDRKSSGITSTYRVPSGTSLYSRYK
YKTICQFRTVYPLTIVPATVNKARIHYDNSSSLWKIELNLDVFDGANFSLDFVRFYLNGP
ATVTGIIYTLLCDEVDNIVLQRNNDVLYDISANISGAGFYESEVTLPQKGNVSYIHNLIL
DYFSFPERFNFIDIEFDSGIELCSGDSVRIEITLKSSAEKYEPDRIERNVSERLFKVNCS
PVVNLFEKKTEPLRLSDGQDEYQVNTDLYSRNEVLIWDINKVTLHRYENDIVKQFPLKNL
FGLEHSVIKQSCNIFWHSSCYRSSSERGNFEESVYIRLSDDGGAQSCIMTGDVLSIDAIC
TNGNIPSSINNGDPDGDFDCDIDIAQLRITALNRPSRMLPAMALKGMNWRIVSQLSLNFV
LLSGTDGAMKLREMLSIYNYNNNHSISIFIEWIKELQITPVSSRLPGIYPPVTARGIDIT
VTLSKDADMHPECFMFCSFLDHFLGLHAPVNSFTRMITVIEHEEHTRRVWPIRAGKLTWL
>gi|223713529|gb|ACDM01000069.1| GENE    19     13959  -     14891    306    310 aa, chain + ## HITS:1  COG:RSp0748 KEGG:ns NR:ns ## COG: RSp0748 COG3520 # Protein_GI_number: 17548969 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 3     270      16     315     363      85   27.0  2e-16
MALINNRSKFSFFNKVRVLLKNILKPDESVEDVVDEHFRFTSSLSLDAPDGQIENLYQDE
KDGKYHLTLFDNGLTGATGILPAAYTEWLIERKLRYNDDAPKAFMDMFDHRMYCLSYLAW
QKMHLSGDENRRDNNVLNNVLLSLGGITPQTVSVTGLAYVAFYSQPVRSLAGLEQLLSLI
HQIRVSINPFRGTFENTEPSEQGVLGNCLYTLGEGPVIGNVRWVVDSHFDVVLGPVDYRK
AQELMPGKDSHYFIRQQIRSYIGDVLKFKIYVKIYPGNNDNQLNINNKLGFNLSLGSETE
NYKERCFCIF
>gi|223713529|gb|ACDM01000069.1| GENE    20     15471  -     16886    365    471 aa, chain + ## HITS:1  COG:PA2373 KEGG:ns NR:ns ## COG: PA2373 COG3501 # Protein_GI_number: 15597569 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 111     470     285     667     668     167   32.0  4e-41
MTLADDPASHPKASYDKLEHLPCENLKESRHGYIREWSFTESLKCPSVTLSGYNESNVSE
ITIKSESKLTDVKPSKGVYEDIIPERKRELIKKRSEALIASCDSELKIWSGKTDSWWLSC
GECFSLDKQDYRITSLYLNAVNNDNEHAGLCYCDLCASDNKSSLNFSREFKTPIIPGVLL
ARVVGPDSEEYYTDDNGRVKISFLWGEKSAAGTDKTSCWVRVSQVWSGEGFGSQFIPRIG
SEVLVSFIQGNPDYPVIVGTVYNGQNTSPFSLPENNCKSGFITRSVKNGKKGEGHQLVFD
DKEGEEKVIVTSSGDSLLTVKKDMISTINRSMSLTIAEGRNAEIKRGNDRLVLKEGDLHN
DVHGNINIKVSNGDYNLKVSGGSGSLITDKNLTLESTQSIKIKVGANEITISTSGIDIKA
AKITIEGQVSAEVKAATLKFESQAISEVKGTMLTLQGSAMTQIKGGIVNIG
>gi|223713529|gb|ACDM01000069.1| GENE    21     16897  -     17364    180    155 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3291 NR:ns ## KEGG: EC55989_3291 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     155       1     155     155     315  100.0  3e-85
MSETKNITVPEINKTVEQMLIKGRWLDALDFWINNTDSLVLIRWLAQFISQLSPEEDSLL
LQSIVRWKEGDDEQRWEIFRHAESVGFSTQTGALGVSLFVSQGSLSPAPYDPVYAPSCSE
KKIIYGILMHQSNKYYDAPDEGVFFLFRHWCNSHS
>gi|223713529|gb|ACDM01000069.1| GENE    22     17374  -     17673     84     99 aa, chain + ## HITS:1  COG:all3319 KEGG:ns NR:ns ## COG: all3319 COG4104 # Protein_GI_number: 17230811 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 1      99       1      99     100      94   62.0  6e-20
MPQPAARVTDMHVCPMVTPGLPPVPHVGGPLLPPGSPSVFIGGLPAATLGTLALCSGPVD
VVIMGSVKVLICGKPAARMGDICAHGGTIVSGYPQVLIG
>gi|223713529|gb|ACDM01000069.1| GENE    23     17677  -     18753    331    358 aa, chain + ## HITS:1  COG:RSp0759 KEGG:ns NR:ns ## COG: RSp0759 COG3515 # Protein_GI_number: 17548980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 29     356       7     326     337     102   26.0  2e-21
MNKIETDTLLLPVIGESPAGDDIEYDPVYSEIREARQNDPDYMSQGEWAVSEPRRADWRK
VRKLCEVTLRNKSKDLQISCWYVESLTHLYALEGMHCGLEYLAKFISQYWTTCWPSQEEG
QEIRYSKLVRLDIDLSEYLKAYPLLEDKEITLSEWYKVLSFEHGASLSEAGKERLIESEG
DHSVESFKRAVGKYNPRKVSEQLLQLYDLPDKIDEIESSYFFHTHEDIHHIFAKTRHIIS
EITELLSRFLPQETLDHSSVSQFLGKPDSRDTRTALPEEKKEFYSALTPSTDKEMSREKA
IEQLEKIAIFFRQSEPTSPVPYLLERAIRWSTMTMSEWLEELLKDNDSMEQINRVLKG
>gi|223713529|gb|ACDM01000069.1| GENE    24     19004  -     19312    245    102 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3288 NR:ns ## KEGG: EC55989_3288 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_55989 # Pathway: not_defined # 1     102      83     184     184     214  100.0  6e-55
MNNPVLIKQFFIGTGKVDGILKVDKYVAMPGQEITLHIDRNEGTKYVGVVAGYYPFPGKQ
HMLLLDIPVDVVEEGWWNKSLHASLLPLSKKISMGKESISMK
>gi|223713529|gb|ACDM01000069.1| GENE    25     19739  -     20743    -23    334 aa, chain + ## HITS:1  COG:AGl1059 KEGG:ns NR:ns ## COG: AGl1059 COG3522 # Protein_GI_number: 15890649 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29     297     159     429     446      65   20.0  1e-10
MRNVYHDSQDADITRIKYDIQILTDEEKDNTTDYEYLPLTRIIYGNNSLCIDDECSFPVM
RLSANHKLRNKIAEIYSDIKFYKNRLEKYRYTERTVSDGHLYNFLILCAINRTLPLLSSF
INEDAIHPWLYYMALCQFAGEISTFHNSGLSDTRIVELSYNHYEQISCFSDLQYYIKLIL
DDSCRDKIISVEFRKITTDTLICNFDEYGAGSNSDYYIKLTSDTFRKNKLIALPEIKIAP
SEHIDMIIQHALPGIKFTVMDAVTSDLQVRENTIWLKIDKHSELWTLAQTQKRVAFYWSC
SPDDLLVELVLSQEKYAVSRPKQDNGSFHPAVGR
>gi|223713529|gb|ACDM01000069.1| GENE    26     21082  -     21672    105    196 aa, chain + ## HITS:1  COG:RSp0739 KEGG:ns NR:ns ## COG: RSp0739 COG3455 # Protein_GI_number: 17548960 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 38     145      68     178     263      69   35.0  4e-12
MNIVECYMPVFKLISSVRVFPEEYSDYDSTRKNIINTVEEAVRNSEKMSLSDSELDAAFY
AVIVMLDEAILCSELPCRKEWRDNLLQIKYFGHSTGGVEFFYKLDKVIESGSQAGWVFLL
CLLLGFRGKYSVGSNDEINNYISRLRRQCELNVAIDEGNNISLREKKYKSSRLGFYLLLV
GIVAVYFVVLSMIYMR
>gi|223713529|gb|ACDM01000069.1| GENE    27     22415  -     22630    125     71 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MSSEYFRPFNLSGNCSISFFSLSLNESSSAWHIDAIILDLNDDNMYDESYSDAFVPDLLV
AQNTGCHFSCF
>gi|223713529|gb|ACDM01000069.1| GENE    28     23109  -     25082    668    657 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3284 NR:ns ## KEGG: EC55989_3284 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_55989 # Pathway: Bacterial secretion system [PATH:eck03070] # 1     657     481    1137    1137    1302   99.0  0
MQASPSGKRELILSLSSSLISWDKMMKDESLSDLAKSPGIHELLKITRPHDKISSIASLA
VERDEIQKNNGIENIYVFRNLLTELVQSDPSYSWFVSEDVNIPAVRITDFWEDENSSVYL
SGIWTQPGQNKLHQWYETIKEAYGRDTVPEAFSSFVLYLDESRQEHFRQFIMSVARARKD
SHSGLMNPLQLTNIIHNRSSEHRFFQFVDDELHNIPTSSAQDWLSEFRLLNHLFSLKVDN
GMKRQIEQFDLMLRIYLISVLNNSQMNRTLTHVTTWRSWQNALRNAVNSVLHTASSVELI
RNAMRSDPENKLVILFDEFEKVRSVINSNNREPVIDSVWDIYERQIYQLLDHAVTYTGCW
VGEQWRNSVLGRFNSGKHNLSYSEMQGKVYKDIIGFLKGPSNGVLALDPDGVRLLSFRER
SIPFSPSFITFINDIVSPDDLLDVWLRERTQNKDELINVQGQLDLLNQTLQNAESQPYRV
TIDSAPATIPDNPRVKPTGTTLTLECKTGNSSIRSMNFADSGIFTWYPGSCHSVRIDILF
PNFSATYKFTGETAWIDFINKFSDGESELMTKDFSPESRNFLESMGIKGILVRYKLSDTG
NLSQAYIEWEQLKQEKDKLKDLQVNLSNKLLTTHSWEKSAWISRLPGNITICPVVQE
>gi|223713529|gb|ACDM01000069.1| GENE    29     25086  -     27635   1142    849 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 8     809       2     779     815 444  34 1e-124
MSIYLKPIINKLTPESRNTLDSAINYAISRSHHEVDCLHLLWKLLQEHKYIAEVLYEQSL
FNPEWVLNAIESELIRINTVPQSSPVFSESMQTLLEKTWIHASTKWQIDHIDIPVFLSTM
INFRDSIFPLNVSDALCCDMDVAEELLISFSDEAEHSASHRPTDRSSHEYLSKYTENLSL
RAETGKLDPVTGREKEVRQLIDILLRRRQNNPILTGEPGVGKSSIVEGLALQIASGRVPD
VLKNVRIHALDMGALLAGASVRGEFENRLKSLLTELNSLDGTAILFIDEAHSLIGAGGLP
GQTDAANLLKPALARGELRIIAATTWGEYKKYFEKDGALARRFQIVKVAEPNQDVTAEML
RSLLPMMEKHHNVSIREEAITATVHLSDRYLHGRRQPDKSVSLLDTACSRVAVSQSTSPD
AIQDVEASLVRYQGELALLTQERSDVLRQEMLANKIAQLEEELEQLKSAWRHQSELVAKI
QSSDDISSKNMYRKELESAYKKDSPMVFECVDKNCVADVVSGWTGVPLGVCLDGEQQKAS
GLLRCLEQRVLGQRYAMSAIASQVLICRADLKDPVKPDGVFLLAGPSGTGKTETARALAE
FVYGDENKLITINMTEFQEAHTVSTLKGAPPGYVGFGQGGTLTERVSHNPYSVILLDEIE
KAHPDVLEFFFQIFDSGIIEDAEGKMVSFRDCLIIMTSNFASENITNIWNDGETNRDRIK
EMLLPLFNEHFGAAFMGRTNLIPFTPLHSKTLRDIVLIKIDKICQRFEQASGQMYKIEYN
DSLIDWITHHCQCDKSGARDIDSVLNSTVLPVLARYLTDSEDNRTPKKIRISVRKNNITL
RSSQFATRN
>gi|223713529|gb|ACDM01000069.1| GENE    30     28423  -     28641    193     72 aa, chain + ## HITS:1  COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      71      91     161     296     140   98.0  7e-34
MAVMGLAGVLRGKKVRTTISRKAFAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVA
FIIDVFAGYIVW
>gi|223713529|gb|ACDM01000069.1| GENE    31     28657  -     29043    377    128 aa, chain + ## HITS:1  COG:ECs1689 KEGG:ns NR:ns ## COG: ECs1689 COG2801 # Protein_GI_number: 15830943 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     128     169     296     296     240   95.0  5e-64
METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYKARLKEAKLLASTGSTGDSYDNA
MAEIIKGLYKAEVIHRKSWKNRTEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYAS
IGNDDLAA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:18:44 2011
 Seq name: gi|223713528|gb|ACDM01000070.1| Escherichia sp. 4_1_40B cont1.70, whole genome shotgun sequence 
 Length of sequence - 4967 bp
 Number of predicted genes - 5, with homology - 4
 Number of transcription units - 4, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1     .       +    CDS        378 -       527     59  ## gi|256025042|ref|ZP_05438907.1| hypothetical protein E4_16848
     2     1 Op  2     .       +    CDS        511 -       630     78  ## 
                               +    Prom       637 -       696    2.7 
     3     2 Tu  1     .       +    CDS        788 -       997     92  ## ROD_50021 hypothetical protein
                               +    Term      1194 -      1239   -0.9 
                               +    Prom      1503 -      1562    1.8 
     4     3 Tu  1     .       +    CDS       1584 -      2150    133  ## gi|256025043|ref|ZP_05438908.1| hypothetical protein E4_16853
                               +    Prom      2596 -      2655    6.1 
     5     4 Tu  1     .       +    CDS       2713 -      3783    189  ## gi|256025045|ref|ZP_05438910.1| hypothetical protein E4_16863
                               +    Term      3994 -      4037    1.0 
Predicted protein(s)
>gi|223713528|gb|ACDM01000070.1| GENE     1       378  -       527     59     49 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256025042|ref|ZP_05438907.1| ## NR: gi|256025042|ref|ZP_05438907.1| hypothetical protein E4_16848 [Escherichia sp. 4_1_40B] # 1      49       1      49      49      80  100.0  4e-14
MRSLLRDLKSNPRRHVQNVLLKYEPHFKFIKVVMQKQDQPREPSYVIDA
>gi|223713528|gb|ACDM01000070.1| GENE     2       511  -       630     78     39 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MSLMPETRDVSLFRHGITSMSEGRVLLRYLKQQDDSVFL
>gi|223713528|gb|ACDM01000070.1| GENE     3       788  -       997     92     69 aa, chain + ## HITS:1  COG:no KEGG:ROD_50021 NR:ns ## KEGG: ROD_50021 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 2      69      32      99     101     110   79.0  1e-23
MEAVYIGNDVCHITITCNQSGFHLTKNGVRVLTERNIRSLNELLPLLRRRWDVTPAIILA
VEYLLRVSV
>gi|223713528|gb|ACDM01000070.1| GENE     4      1584  -      2150    133    188 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256025043|ref|ZP_05438908.1| ## NR: gi|256025043|ref|ZP_05438908.1| hypothetical protein E4_16853 [Escherichia sp. 4_1_40B] # 1     188       1     188     188     390  100.0  1e-107
MIIYFFPFQMDENDTFLDAEVKYQKMKNKECYGVKASHKTPLSFLKSSDTLYIVAHGNTS
VIGTGSATGPTLNPLALATLLMNRRLPKNFIDIRVLTCASGIHSRTPAFAQRLKEIMNEH
GYHSLVVTGYLGEVDISRDWRLKNDDGMAFYSSRKKGIIPVKDVLSESQRALCGSDLKYA
LSDFKKRF
>gi|223713528|gb|ACDM01000070.1| GENE     5      2713  -      3783    189    356 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256025045|ref|ZP_05438910.1| ## NR: gi|256025045|ref|ZP_05438910.1| hypothetical protein E4_16863 [Escherichia sp. 4_1_40B] # 1     356      29     384     384     707  100.0  0
MNNLSPAKCERAYWMTLEKRCLSLFMENGYDLQTGAWFCLISANLYSWEGLALSSWKFAD
SFVKEKCWPHVTATQMRTNILIWYIKNVIPAMQSLPDDEKTYSSLTLLEDALTLLADLEY
NLLSGKFFIVSDMLAELKRQKSDDSESTDAAHHDSGSHDAKDIRSFSSGLPTNIDSNYTA
GPEHNTLIKKDKKLRIYYNVVSFISGALITVVMNYAGRPETVLKLRGIIPDSFITEMVMN
YSGCSVSLPNSADSWSKLGKKIDDFTETLNVIENDGGYITISKLKTIAYDLKNTFLEYDM
PVNIKISDLYNNQNMSKVDINRELEMIQHNINKFNCEIGYLRLRNEGLLKDKVREK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:19:15 2011
 Seq name: gi|223713527|gb|ACDM01000071.1| Escherichia sp. 4_1_40B cont1.71, whole genome shotgun sequence 
 Length of sequence - 2086 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom         9 -        68    2.7 
     1     1 Op  1   2/0.000   +    CDS        100 -      1233    263  ## COG3547 Transposase and inactivated derivatives
                               +    Prom      1334 -      1393    5.0 
     2     1 Op  2     .       +    CDS       1444 -      1635    154  ## COG2801 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713527|gb|ACDM01000071.1| GENE     1       100  -      1233    263    377 aa, chain + ## HITS:1  COG:mll9195 KEGG:ns NR:ns ## COG: mll9195 COG3547 # Protein_GI_number: 13488118 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 8     364       7     363     369     336   47.0  5e-92
MHSENIAAYIGLDVHKETLAVAIAAPERLGEVRYYGTINNEAQAVRRLFQKLQGLYGNIL
SCYEAGPCGFGLYHQLTAMNIKCQVIAPSRIPKSPTDRIKNDHRDAISLARLLRAGELTP
VWIPDLTHEAMRDLIRARAAAKRDSRVARQRILSMLLRTDKRYAGKHWTGKHRTWLANQS
FSQPSQQIAFQHYCQSLEQIEDRILQLDQEISRLLPEWSLCNLVCQLQALKGVGQLTAIT
LVAELGDFSRFSSPKQLMAFLGLVPGEYSSGNSIRPRGITKVGNSELRRLLYEAAWSYRT
PAKVGAWLIYYRPDSVTQYSKDIAWKAQQRLCSRYRSLTAKGKKSQVAITAVARELTGFM
WDIALAAQSSFSQQKQN
>gi|223713527|gb|ACDM01000071.1| GENE     2      1444  -      1635    154     63 aa, chain + ## HITS:1  COG:SMb20827 KEGG:ns NR:ns ## COG: SMb20827 COG2801 # Protein_GI_number: 16264315 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 1      63      87     149     195      90   65.0  1e-18
MLLDAVEQLNKDDKPLLHSDQGWQYQMPRWQRWLSDNGITQSMSRRGNCLDNAAMESFFS
TLK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:19:16 2011
 Seq name: gi|223713526|gb|ACDM01000072.1| Escherichia sp. 4_1_40B cont1.72, whole genome shotgun sequence 
 Length of sequence - 1358 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 1, operones - 1 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   -    CDS          3 -       465    330  ## COG3436 Transposase and inactivated derivatives
     2     1 Op  2   6/0.000   -    CDS        496 -       846    338  ## COG3436 Transposase and inactivated derivatives
     3     1 Op  3     .       -    CDS        843 -      1277    269  ## COG2963 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713526|gb|ACDM01000072.1| GENE     1         3  -       465    330    154 aa, chain - ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     154       1     154     537     227   94.0  6e-60
MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEDEREIEH
LRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSRHR
RPLPAHLPREIYRLEPEESCCPECGGELDYLGEV
>gi|223713526|gb|ACDM01000072.1| GENE     2       496  -       846    338    116 aa, chain - ## HITS:1  COG:ECs1338 KEGG:ns NR:ns ## COG: ECs1338 COG3436 # Protein_GI_number: 15830592 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     116       1     116     116     228   97.0  2e-60
MISLPSGTRIWLVAGVTDMRKSFNGLGEQIQHVLDDNPFSGHLFIFRGRRGDTIKILWAD
ADGLCLFTKRLEEGQFIWPAVRDGKISITRSQLAMLLDKLDWRQPKTSRLNALTML
>gi|223713526|gb|ACDM01000072.1| GENE     3       843  -      1277    269    144 aa, chain - ## HITS:1  COG:Z1648 KEGG:ns NR:ns ## COG: Z1648 COG2963 # Protein_GI_number: 15801134 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 6     144       5     141     141     140   54.0  6e-34
MDKPTDWRSGTRRIFSNEFKLHMVELASKPNANVAQLAREHGVDNNLIFKWLRLWQREGR
ISRRMPPTIVGPTVSQSFPASPTLVPVELIDTPRCATDAPAPEALSVACAASCHVEFHYG
KMMLENPSPELLTVLIRELTGRGR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:19:19 2011
 Seq name: gi|223713525|gb|ACDM01000073.1| Escherichia sp. 4_1_40B cont1.73, whole genome shotgun sequence 
 Length of sequence - 7211 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 3, operones - 1 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       351 -       380    2.8 
     2     2 Tu  1     .       -    CDS        394 -      4233   2224  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom      4424 -      4483    2.3 
                               -    Term      4847 -      4880    4.0 
     3     3 Op  1   2/0.000   -    CDS       4974 -      5180    118  ## COG2801 Transposase and inactivated derivatives
     4     3 Op  2   2/0.000   -    CDS       5299 -      6375    310  ## COG3547 Transposase and inactivated derivatives
     5     3 Op  3     .       -    CDS       6594 -      7001    216  ## COG2801 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713525|gb|ACDM01000073.1| GENE     1         1  -       243    177     80 aa, chain + ## HITS:1  COG:ECs2221 KEGG:ns NR:ns ## COG: ECs2221 COG3328 # Protein_GI_number: 15831475 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      80     210     289     289     157   96.0  3e-39
AYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDSVKKVVWLAIQSASQKWTMPLKD
WRMAMSRFIIEFGDRLDGHF
>gi|223713525|gb|ACDM01000073.1| GENE     2       394  -      4233   2224   1279 aa, chain - ## HITS:1  COG:NMB1998 KEGG:ns NR:ns ## COG: NMB1998 COG3468 # Protein_GI_number: 15677826 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 1     748      65     878    1431     298   32.0  6e-80
MGRLGKAPMADFSSVSSNGVATLVSPQYIVSVKHNGGYRSVSFGNGKNTYSLVDRNNHPS
IDFHAPRLNKLVTEVIPSAVTSEGTKANAYKYTERYTAFYRVGSGTQYTKDKDGNLVKVA
GGYAFKTGGTTGVPLISDATIVSNPGQTYNPVNGPLPDYGAPGDSGSPLFAYDKQQKKWV
IVAVLRAYAGINGATNWWNVIPTDYLNQVMQDDFDAPVDFVSGLGPLNWTYDKTSGTGTL
SQGSKNWTMHGQKDNDLNAGKNLVFSGQNGAIILKDSVTQGAGYLEFKDSYTVSAESGKT
WTGAGIITDKGTNVTWKVNGVAGDNLHKLGEGTLTINGTGVNPGGLKTGDGIVVLNQQAD
TAGNIQAFSSVNLASGRPTVVLGDARQVNPDNISWGYRGGKLDLNGNAVTFTRLQAADYG
AVITNNAQQKSQLLLDLKAQDTNVSEPTIGNISPFGGTGTPGNLYSMILNSQTRFYILKS
ASYGNTLWGNSLNDPAQWEFVGMDKNKAVQTVKDRILAGRAKQPVIFHGQLTGNMDVAIP
QVPGGRKVIFDGSVNLPEGTLSQDSGTLIFQGHPVIHASISGSAPVSLNQKDWENRQFTM
KTLSLKDADFHLSRNASLNSDIKSDNSHITLGSDRAFVDKNDGTGNYVIPEEGTSVPDTV
NDRSQYEGNITLNHNSALDIGSRFTGGIDAYDSAVSITSPDVLLTAPGAFAGSSLTVHDG
GHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYLTDGYDLTGDNAALEITR
GAHASGDIHASAASTVTIGSDTPAELASAETAASAFAGSLLEGYNAAFNGAITGGRADVS
MHNALWTLGGDSAIHSLTVRNSRISSEGDRTFRTLTVNKLDATGSDFVLRTDLKNADKIN
VTEKATGSDNSLNVSFMNNPAQGQALNIPLVTAPAGTSAEMFKAGTRVTGFSRVTPTLHV
DTSGGNTKWILDGFKAEADKAAAAKADSFMNAGYKNFMTEVNNLNKRMGDLRDTNGDAGA
WARIMSGAGSADGGYSDNYTHVQVGFDKKHELDGVDLFTGVTMTYTDSSADSHAFSGKTK
SVGGGLYASALFESGAYIDLIGKYIHHDNDYTGNFASLGTKHYNTHSWYAGAETGYRYHL
TEDTFIEPQAELVYGAVSGKTFRWKDGDMDLSMKNRDFSPLVGRTGVELGKTFSGKDWSV
TARAGTSWQFDLLNNGETVLRDASGEKRIKGEKDSRMLFNVGMNAQIKDNMRFGLEFEKS
AFGKYNVDNAVNANFRYMF
>gi|223713525|gb|ACDM01000073.1| GENE     3      4974  -      5180    118     68 aa, chain - ## HITS:1  COG:VC0257 KEGG:ns NR:ns ## COG: VC0257 COG2801 # Protein_GI_number: 15640286 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 1      67     223     289     290     102   68.0  2e-22
MERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYNALRPHEYNGGLPPNESENRYWKN
SNSVASFC
>gi|223713525|gb|ACDM01000073.1| GENE     4      5299  -      6375    310    358 aa, chain - ## HITS:1  COG:MT3430_1 KEGG:ns NR:ns ## COG: MT3430_1 COG3547 # Protein_GI_number: 15842922 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 4     345      22     362     413     100   30.0  5e-21
MVDKVTKAAVVGGVDTHKDLHVAAVVDQNNKVLGTQYFSTTRQGYRQMLAWMTSFGTLKR
IGVECTGTYGSGLLRYFQNAGLEVLEVTAPDRMERRKRGKSDTIDAECAAHAAFSGIRTV
TPKTRDGMIESLRVLKTCRKTAISARRVALQIIHSNIISAPDELREQLRNMTRMQLIRTL
GSWRPDASEYRNVTNVYRISLKSLARRYLELHDEIADLDVMIAAIVDELAPELIKRNAIG
YESASQLLITAGDNPQRLRSESGFAALCGVSPVPVSSGKTNRYRLNRGGDRAANSALHII
AIGRLRTDAKTKEYVARRVAEGHTKMEAIRCLKRYISREVYTLLRNQNRRINSIPITA
>gi|223713525|gb|ACDM01000073.1| GENE     5      6594  -      7001    216    135 aa, chain - ## HITS:1  COG:b4285 KEGG:ns NR:ns ## COG: b4285 COG2801 # Protein_GI_number: 16132106 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     114      62     175     198     234   96.0  3e-62
MGRWLAGRLMKELGLVSCQQPTHRYKRSGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIW
TGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDSNNAD
VSLYHHLVCRLTRLV
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:19:22 2011
 Seq name: gi|223713524|gb|ACDM01000074.1| Escherichia sp. 4_1_40B cont1.74, whole genome shotgun sequence 
 Length of sequence - 13227 bp
 Number of predicted genes - 10, with homology - 9
 Number of transcription units - 6, operones - 3 average op.length -  2.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          9 -       302     72  ## EC55989_3270 hypothetical protein
                               -    Term       315 -       361    7.8 
     2     2 Op  1     .       -    CDS        391 -      3261   1679  ## EC55989_3269 putative PstII restriction-modification enzyme Res subunit
     3     2 Op  2     .       -    CDS       3264 -      3989    579  ## COG2189 Adenine specific DNA methylase Mod
                               -    Prom      4091 -      4150    1.9 
                               +    Prom      3883 -      3942    8.2 
     4     3 Tu  1     .       +    CDS       4010 -      4342     63  ## 
     5     4 Op  1     .       -    CDS       4902 -      7289   1426  ## EcE24377A_3322 S8A family peptidase
     6     4 Op  2     .       -    CDS       7299 -      8279    767  ## COG0464 ATPases of the AAA+ class
     7     4 Op  3     .       -    CDS       8305 -     11154   1915  ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family
                               -    Prom     11190 -     11249    3.5 
                               +    Prom     11296 -     11355    2.3 
     8     5 Op  1     .       +    CDS      11455 -     11637    120  ## EC55989_3263 hypothetical protein
     9     5 Op  2     .       +    CDS      11640 -     12158    198  ## EC55989_3262 hypothetical protein
                               +    Term     12241 -     12268    1.5 
                               -    Term     12546 -     12578    3.1 
    10     6 Tu  1     .       -    CDS      12624 -     12887    241  ## EC55989_3261 hypothetical protein
                               -    Prom     12974 -     13033    2.7 
Predicted protein(s)
>gi|223713524|gb|ACDM01000074.1| GENE     1         9  -       302     72     97 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3270 NR:ns ## KEGG: EC55989_3270 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      97       1      97      97     191  100.0  8e-48
MNTERPLPQKQNLYKTMWYLIFSAERFVTIAAENSMAFELEHEEYKRKLAERNYSIDPKV
HVHSHPQRLKDLRTLLLKTTGCILSVIILIVGIGFYT
>gi|223713524|gb|ACDM01000074.1| GENE     2       391  -      3261   1679    956 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3269 NR:ns ## KEGG: EC55989_3269 # Name: not_defined # Def: putative PstII restriction-modification enzyme Res subunit # Organism: E.coli_55989 # Pathway: not_defined # 1     956       1     956     956    1963   99.0  0
MSQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVK
GFERAFPSLCFALATGVGKTRLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGS
PKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESKTGDLFGGETAPHINIFNISK
INALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND
LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEE
QLEKIKLEDGIHHHEYVKTELTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFF
NGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVIHVNKLKEGWDVTNLYTIVPL
RASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY
IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTE
TERKVAELTFKVVSEEAKRLTSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQI
DLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTIDIPRIVVLPKREVNYGFNDFN
LSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH
ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQ
GFDVIHPATFNFAGNEKPRDFRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRL
AQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMNNGYCLIEPKKANEIDTPEVQ
AKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA
>gi|223713524|gb|ACDM01000074.1| GENE     3      3264  -      3989    579    241 aa, chain - ## HITS:1  COG:HI1056 KEGG:ns NR:ns ## COG: HI1056 COG2189 # Protein_GI_number: 16272988 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Haemophilus influenzae # 12     100     436     523     629     103   57.0  3e-22
MIPTISAFDTPKPEALIKKILEIATDNGDLVLDSFAGSGTTGAVAQKMGRQWIMVELGDH
CRTHIVPRMKKVIDGKDLGGITKSVSWQGGGGFRYLSLAPSLLKKDTWGNWVINKYYNPE
MLAEAMCKHMNFTYAPSQTQYWNHGYSTETDHIYVTTGSLAYEQLKVLSEEVGTERTLLI
CCKAFMTEGADFPNLTLVKIPRAILSKCEWDQDDYSFTLNVLSDSEQPDDIDYDEDTEDE
E
>gi|223713524|gb|ACDM01000074.1| GENE     4      4010  -      4342     63    110 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MSCYFQLQNETISFLAVYLTNYQHIHENMESNHFVLSTNQFSISPDLFFVRPNANVHQFH
LGALEKFLCHRGQQEGNTLLGDLLFYLLVPLPLAVLGSKDCRLDLLYRNG
>gi|223713524|gb|ACDM01000074.1| GENE     5      4902  -      7289   1426    795 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_3322 NR:ns ## KEGG: EcE24377A_3322 # Name: not_defined # Def: S8A family peptidase # Organism: E.coli_E24377A # Pathway: not_defined # 1     795       1     795     795    1599  100.0  0
MTANYQHLTITKAPLQNDRRTRRVNMPRIRRGDLRQHGQMLLTQLHTLRPTLAQVPGSAD
DGRYILKLNYSGTMNFSALIHHGVEFISQEGKQVCIVFTNEQGLTTFETHLAQLGLPRTD
LTYRNILEALDGIDGWSAEDRKSWALRRYGFPVAERFNLDVELWPVDVAHHPRRIDLYTR
FENWLREQGILWRDKVNLDSLLMYRIEVSLAQAEYLLAHRDVRLVDLPPSSGISYQQINR
DINTLPEHLISPAVNAARVCILDSGINTNHPLLSAAIAESASFIPNQDAFDQEGHGTAVA
SIALYGDVEACNQSNFWQPQLWLYNGKVLNERAEFNAETIESTLTAAVAYFTDLGCRIFN
LSLGNANAPYDGKHIRGMAYLLDTLARQYNVLFVVSAGNFAGSDDPPVPQNSWRDEYPDY
LLHEDSVIIDPAPALNVLTVGSVARHNATLDAQRRPGDIQHLSPATENQPSPFTRHGPSV
KGAFKPDVVAHGGNVASNVRQGQWQAHMRGLGVLSCHHQFQGNTLFKELSGTSFAAPYIT
HLAGRLLNEYPEMSANMLRAMLVNHASVSQEMTQAFPQAMRESYRNAPATRNREIERDVT
GYGIIDEDALYRSSENVVVMRCEEQIENNAHQFFELPFPASFLRSQRATREVRVTLAYSP
AVRTTRLDYTATRIGFRLVKGRSLDEVQASFNHQTQSETETRSDDAQTNRVVSAQQRERG
TVQSSIWTFRQRNPDEKWFIVVTRQDRDWGEAFSSEQEPYALVVTATDRDNEQAQLYTQI
QAQIREQERARARIG
>gi|223713524|gb|ACDM01000074.1| GENE     6      7299  -      8279    767    326 aa, chain - ## HITS:1  COG:AGpT158 KEGG:ns NR:ns ## COG: AGpT158 COG0464 # Protein_GI_number: 16119896 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1     316      18     335     345     159   35.0  8e-39
MANGKILRQLIKAGATGDTATFRRVSEAIIDEERQKQHHLLANDLEHILYGDRLVQASRS
PALPQAPIDKERGLPLLDLRQPQRSLDEMILPATSATVIDELLEEHRRSDVLHSYGMKAA
SKIMFFGPPGCGKTLTAEVIAFELDMPLAIVRLDVLVSSFLGETAANLRKIFDFIAEHPM
VVLFDEFDAIGKERGDSGEHGELRRVVNAVLQMMDAYQGKSLILAATNHEHILDSAIWRR
FDEVIEFPLPDQAQLRELLALKLRGTRRQFELDDSELLSLLLGKSGADIERIVRRATKHM
ILRHQEFLTLKDLKNATQRENARTHR
>gi|223713524|gb|ACDM01000074.1| GENE     7      8305  -     11154   1915    949 aa, chain - ## HITS:1  COG:BS_yqhH KEGG:ns NR:ns ## COG: BS_yqhH COG0553 # Protein_GI_number: 16079514 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus subtilis # 37     614      62     540     557     224   31.0  4e-58
MYSDHQRSYLAHWLTLSGKAEDSLTQTIASARVDMNPHQVEAAMFALASPLSNGVILADE
VGLGKTIEASLILAQKWAERRRKLLLIAPATLRKQWSQELEEKFSLPSQIIEAKIFNQMV
KEGSDNPFDIENATGKAAICICSYEFAARKEHELARIPWDLVVMDEAHKLRNIYKNDGAK
TAKKLSGALSGRKKILLSATPLQNSILELYGLISVIDPHFFGDLASFKARYSRQNIDDAE
LALLRVRLNKICNRTLRRQVQQEGGISFTRRHSITEDFRPTEDEEVLYKQVSSYLQRDDL
LAIKSGARHLVTLVIRKILASSSTAIQGTLETMIHRLESKMPVLDALTDYENYDDYSDEE
GIDDEDTIDPQALQAEIDQLKNYKTLAASITKNAKAEALLRVLDRAFTFTAELGGLRKAV
IFTESVRTQTWLAQLLSESGYEGEVVLLNGSNSDAVSKKIYSDWLEKHQNSGRVSGSSTA
DMKAALVEKFRDEGTLMICTEAGAEGINLQFCSLLINYDLPWNPQRVEQRIGRVHRYGQK
HDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGASDDILGSIESGVDIERRIHEIYQH
CRSDEQIEQEFNQLQDELKDQLENRENETRRSLFEHFDVDVVRNLKTRRTTTLAQLNDYQ
ENLLLLAEMFLSDESDFQRSETGFRSRGKYFDVNWPIADEKDAEFFRPSQGYGKQLIDAA
LHEGASLSTSPVCQKLHFIYQPRSGQLADVKLFCGKSGQLLLAKVSIGNQEQQREKLLTV
AVTENGEVLAEETVSRLLRLPLSEITSVEEQPLLPALTTQCEVLRHSFIQQVERDNELYY
NEEVEKLERWSEDRRIALDLRIKQLDAEIKEARKAARQLPSLKEKMEAKRALKVLERERD
SIMLQYHDEKKKIEQEEDRLLEEVEQKLATEITSRQLFAVSWTLSSPSA
>gi|223713524|gb|ACDM01000074.1| GENE     8     11455  -     11637    120     60 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3263 NR:ns ## KEGG: EC55989_3263 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      60      30      89      89     120  100.0  2e-26
MRRLPLMVGVIVGVMLAVGCHDRRAGVRTLLGDGVEQWGQKLPYDHWEFNFFTRKICRHW
>gi|223713524|gb|ACDM01000074.1| GENE     9     11640  -     12158    198    172 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3262 NR:ns ## KEGG: EC55989_3262 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1     172      26     197     197     357  100.0  7e-98
MVYLEDGDIRESFFRRLDPTEPSQSSVGKWSQHVGGFLASFNIGKALPVRMTVCWDSVID
KKAYETEIWFSRDTWQQMLTAYPDTYRPGKIYYRNKMIIGLPPGGKVRVWLKDNRNPVVL
QNPARQFTLTGDDMLICKNVPNKIDFSYIKANGYDPFIRDFIKEKPYPYGHW
>gi|223713524|gb|ACDM01000074.1| GENE    10     12624  -     12887    241     87 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3261 NR:ns ## KEGG: EC55989_3261 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      87       1      87      87     163  100.0  1e-39
MANDTTPYLMVLLLNNDVWCKSREVVVLRNLIEQAWGKVLDEDNSITYLVVYPEVLTLVF
DAANTYNAEPGVLEQTARAYIEITWCH
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:20:42 2011
 Seq name: gi|223713523|gb|ACDM01000075.1| Escherichia sp. 4_1_40B cont1.75, whole genome shotgun sequence 
 Length of sequence - 146594 bp
 Number of predicted genes - 138, with homology - 138
 Number of transcription units - 85, operones - 23 average op.length -  3.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2     .       -    CDS       1683 -      1904    100  ## EC55989_4689 hypothetical protein
                               -   TRNA       1817 -      1892   84.1  # Phe GAA 0 0
     3     1 Op  3   3/0.568   -    CDS       1999 -      2574    754  ## COG1309 Transcriptional regulator
     4     1 Op  4   7/0.162   -    CDS       2611 -      4308   1510  ## COG4232 Thiol:disulfide interchange protein
     5     1 Op  5   5/0.297   -    CDS       4284 -      4622    208  ## COG1324 Uncharacterized protein involved in tolerance to divalent cations
                               -    Term      4697 -      4728    5.5 
     6     2 Tu  1     .       -    CDS       4738 -      6039   1400  ## COG2704 Anaerobic C4-dicarboxylate transporter
                               -    Prom      6081 -      6140    4.7 
                               -    Term      6099 -      6130    4.1 
     7     3 Tu  1     .       -    CDS       6157 -      7593   1497  ## COG1027 Aspartate ammonia-lyase
                               -    Prom      7751 -      7810    5.7 
                               +    Prom      7814 -      7873    4.0 
     8     4 Tu  1     .       +    CDS       7930 -      8406    343  ## COG3030 Protein affecting phage T7 exclusion by the F plasmid
                               +    Term      8415 -      8459   -0.4 
     9     5 Tu  1     .       -    CDS       8422 -      9678   1159  ## COG0531 Amino acid transporters
                               -    Prom      9743 -      9802    2.3 
                               +    Prom      9775 -      9834    6.0 
    10     6 Op  1  41/0.000   +    CDS       9954 -     10247    479  ## COG0234 Co-chaperonin GroES (HSP10)
    11     6 Op  2     .       +    CDS      10291 -     11937   2383  ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28
                               +    Term     11967 -     12004    6.0 
                               +    Prom     11965 -     12024    3.8 
    12     7 Tu  1     .       +    CDS      12075 -     12428    359  ## ECIAI1_4377 hypothetical protein
                               +    Term     12493 -     12534   -0.2 
                               -    Term     12485 -     12517   -0.2 
    13     8 Tu  1     .       -    CDS      12631 -     13500    882  ## JW4105 hypothetical protein
                               -    Prom     13624 -     13683    5.8 
    14     9 Tu  1     .       -    CDS      13895 -     14923    881  ## COG1509 Lysine 2,3-aminomutase
                               -    Prom     14968 -     15027    3.3 
                               +    Prom     14862 -     14921    3.7 
    15    10 Tu  1     .       +    CDS      14965 -     15531    627  ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
                               +    Term     15538 -     15578   10.5 
                               +    Prom     15738 -     15797    4.2 
    16    11 Tu  1     .       +    CDS      15819 -     15965    120  ## COG5510 Predicted small secreted protein
                               +    Term     15973 -     16010    6.2 
                               +    Prom     16006 -     16065    3.4 
    17    12 Tu  1     .       +    CDS      16141 -     16458    410  ## COG2076 Membrane transporters of cations and cationic drugs
    18    13 Op  1   3/0.568   -    CDS      16455 -     16988    721  ## COG3040 Bacterial lipocalin
                               -    Prom     17009 -     17068    2.0 
                               -    Term     17037 -     17066    2.1 
    19    13 Op  2   3/0.568   -    CDS      17077 -     18210    853  ## COG1680 Beta-lactamase class C and other penicillin binding proteins
                               -    Term     18219 -     18253    8.1 
    20    14 Op  1  10/0.135   -    CDS      18273 -     18632    423  ## COG3080 Fumarate reductase subunit D
    21    14 Op  2  10/0.135   -    CDS      18643 -     19038    514  ## COG3029 Fumarate reductase subunit C
    22    14 Op  3  36/0.000   -    CDS      19049 -     19783    876  ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
    23    14 Op  4     .       -    CDS      19776 -     21584   2006  ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
                               -    Prom     21749 -     21808    3.4 
                               +    Prom     21707 -     21766    7.1 
    24    15 Tu  1     .       +    CDS      21909 -     22886    992  ## COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II)
                               +    Term     22919 -     22947   -1.0 
                               +    Prom     22925 -     22984    3.9 
    25    16 Op  1     .       +    CDS      23150 -     24607   1394  ## COG0531 Amino acid transporters
    26    16 Op  2     .       +    CDS      24659 -     24973    262  ## JW4118 hypothetical protein
    27    16 Op  3     .       +    CDS      24970 -     25284    261  ## JW4119 conserved inner membrane protein
                               -    Term     25186 -     25224   -0.1 
    28    17 Op  1   5/0.297   -    CDS      25313 -     28636   3632  ## COG3264 Small-conductance mechanosensitive channel
    29    17 Op  2   2/0.811   -    CDS      28658 -     29626   1019  ## COG0688 Phosphatidylserine decarboxylase
                               -    Prom     29657 -     29716    2.2 
    30    17 Op  3     .       -    CDS      29723 -     30775    963  ## COG1162 Predicted GTPases
                               -    Prom     30855 -     30914    2.7 
                               +    Prom     30768 -     30827    1.9 
    31    18 Tu  1     .       +    CDS      30870 -     31415    786  ## COG1949 Oligoribonuclease (3'->5' exoribonuclease)
                               +   TRNA      31626 -     31701   93.7  # Gly GCC 0 0
                               +   TRNA      31738 -     31813   93.7  # Gly GCC 0 0
                               +   TRNA      31849 -     31924   93.7  # Gly GCC 0 0
    32    19 Tu  1     .       -    CDS      32194 -     33333    915  ## COG1600 Uncharacterized Fe-S protein
                               -    Prom     33358 -     33417    4.9 
                               +    Prom     33242 -     33301    2.8 
    33    20 Op  1   6/0.189   +    CDS      33347 -     34879   1051  ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15
    34    20 Op  2  13/0.054   +    CDS      34851 -     35312    554  ## COG0802 Predicted ATPase or kinase
    35    20 Op  3  10/0.135   +    CDS      35331 -     36668   1079  ## COG0860 N-acetylmuramoyl-L-alanine amidase
    36    20 Op  4  12/0.054   +    CDS      36678 -     38525   1717  ## COG0323 DNA mismatch repair enzyme (predicted ATPase)
    37    20 Op  5  15/0.000   +    CDS      38563 -     39468    512  ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase
    38    20 Op  6  16/0.000   +    CDS      39554 -     39862    285  ## COG1923 Uncharacterized host factor I protein
                               +    Term     39883 -     39928    6.2 
    39    20 Op  7   8/0.135   +    CDS      39938 -     41218    733  ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2
    40    20 Op  8  21/0.000   +    CDS      41304 -     42563   1450  ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs
    41    20 Op  9  11/0.054   +    CDS      42566 -     43570   1342  ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs
                               +    Term     43600 -     43638    7.2 
    42    21 Tu  1   6/0.189   +    CDS      43652 -     43849    247  ## COG3242 Uncharacterized protein conserved in bacteria
                               +    Prom     43870 -     43929    4.0 
    43    22 Tu  1     .       +    CDS      43953 -     45251   1520  ## COG0104 Adenylosuccinate synthase
                               +    Term     45306 -     45352    9.2 
                               +    Prom     45377 -     45436    4.2 
    44    23 Op  1   2/0.811   +    CDS      45528 -     45881    246  ## COG1959 Predicted transcriptional regulator
    45    23 Op  2   7/0.162   +    CDS      45920 -     48361   1250  ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1
                               +    Prom     48442 -     48501    7.1 
    46    24 Tu  1     .       +    CDS      48541 -     49272    455  ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11
                               +    Term     49287 -     49328    7.4 
                               +    Prom     49285 -     49344    7.2 
    47    25 Op  1   6/0.189   +    CDS      49399 -     49800    370  ## COG3789 Uncharacterized protein conserved in bacteria
    48    25 Op  2     .       +    CDS      49819 -     50517    908  ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
                               +    Term     50523 -     50561    6.1 
    49    26 Op  1     .       +    CDS      50568 -     51227    705  ## JW4141 conserved hypothetical protein
    50    26 Op  2   5/0.297   +    CDS      51245 -     51643    362  ## COG3766 Predicted membrane protein
    51    26 Op  3   5/0.297   +    CDS      51653 -     52291    350  ## COG5463 Predicted integral membrane protein
    52    26 Op  4   1/0.919   +    CDS      52294 -     53457   1164  ## COG0754 Glutathionylspermidine synthase
    53    26 Op  5     .       +    CDS      53541 -     55166   1239  ## COG1960 Acyl-CoA dehydrogenases
    54    27 Tu  1     .       -    CDS      55283 -     55570    247  ## SSON_4370 hypothetical protein
                               -    Prom     55635 -     55694    4.3 
    55    28 Tu  1     .       -    CDS      55707 -     56036    221  ## APECO1_2203 hypothetical protein
                               -    Prom     56063 -     56122    2.6 
                               +    Prom     56001 -     56060    3.7 
    56    29 Tu  1     .       +    CDS      56218 -     56967    510  ## COG1073 Hydrolases of the alpha/beta superfamily
                               -    Term     56679 -     56731    3.3 
    57    30 Tu  1     .       -    CDS      56964 -     57719    855  ## COG1349 Transcriptional regulators of sugar metabolism
                               -    Prom     57744 -     57803    3.5 
                               -    Term     57766 -     57817   11.1 
    58    31 Tu  1     .       -    CDS      57827 -     58891   1277  ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold
                               -    Prom     59060 -     59119    6.3 
                               +    Prom     59071 -     59130    8.1 
    59    32 Op  1  11/0.054   +    CDS      59246 -     60643   1767  ## COG3037 Uncharacterized protein conserved in bacteria
    60    32 Op  2  13/0.054   +    CDS      60659 -     60964    336  ## COG3414 Phosphotransferase system, galactitol-specific IIB component
    61    32 Op  3   8/0.135   +    CDS      60974 -     61438    617  ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
    62    32 Op  4   9/0.135   +    CDS      61452 -     62102    920  ## COG0269 3-hexulose-6-phosphate synthase and related proteins
    63    32 Op  5   8/0.135   +    CDS      62112 -     62966   1072  ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase
    64    32 Op  6     .       +    CDS      62966 -     63652    822  ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
                               +    Term     63740 -     63779    0.3 
                               -    Term     63710 -     63740    3.0 
    65    33 Tu  1     .       -    CDS      63781 -     64056    313  ## LF82_3468 UPF0379 protein YjfY
                               -    Prom     64109 -     64168    4.0 
                               +    Prom     64233 -     64292    2.9 
    66    34 Tu  1     .       +    CDS      64384 -     64779    681  ## PROTEIN SUPPORTED gi|188495956|ref|ZP_03003226.1| ribosomal protein S6
    67    35 Op  1  27/0.000   +    CDS      65105 -     65332    385  ## PROTEIN SUPPORTED gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18
    68    35 Op  2     .       +    CDS      65374 -     65823    720  ## PROTEIN SUPPORTED gi|15804792|ref|NP_290833.1| 50S ribosomal protein L9
                               +    Term     65842 -     65885   11.1 
                               -    Term     65893 -     65923    0.1 
    69    36 Tu  1   9/0.135   -    CDS      65935 -     66906    679  ## PROTEIN SUPPORTED gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22
                               -    Term     66917 -     66947    3.0 
    70    37 Op  1  11/0.054   -    CDS      66959 -     68260   1260  ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16
    71    37 Op  2     .       -    CDS      68303 -     68779    268  ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3
    72    37 Op  3     .       -    CDS      68800 -     70881   1624  ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
    73    37 Op  4   3/0.568   -    CDS      70878 -     72419   1696  ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase
    74    37 Op  5   1/0.919   -    CDS      72429 -     73205    780  ## COG1024 Enoyl-CoA hydratase/carnithine racemase
    75    37 Op  6     .       -    CDS      73215 -     74057    730  ## COG1082 Sugar phosphate isomerases/epimerases
    76    37 Op  7     .       -    CDS      74067 -     74858    869  ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
                               +    Prom     74953 -     75012    4.1 
    77    38 Tu  1     .       +    CDS      75071 -     75718    543  ## COG1309 Transcriptional regulator
                               +    Term     75782 -     75823    2.1 
    78    39 Tu  1     .       -    CDS      75702 -     76340    495  ## COG3061 Cell envelope opacity-associated protein A
                               -    Prom     76365 -     76424    2.8 
                               +    Prom     76428 -     76487    4.9 
    79    40 Tu  1     .       +    CDS      76559 -     77179    940  ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1
                               +    Prom     77240 -     77299    3.7 
    80    41 Tu  1     .       +    CDS      77488 -     78900   1462  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               +    Term     78913 -     78950    8.2 
    81    42 Tu  1     .       -    CDS      78945 -     79607    893  ## COG2846 Regulator of cell morphogenesis and NO signaling
                               -    Prom     79630 -     79689    5.3 
    82    43 Tu  1     .       -    CDS      79715 -     80680    896  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
    83    44 Tu  1     .       -    CDS      80789 -     81649    838  ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases
                               -    Prom     81723 -     81782    3.3 
    84    45 Tu  1     .       +    CDS      81648 -     82118    456  ## COG1733 Predicted transcriptional regulators
                               +    Term     82183 -     82221    4.2 
                               -    Term     81997 -     82036    3.2 
    85    46 Tu  1     .       -    CDS      82241 -     84184   2052  ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
                               -    Prom     84234 -     84293    5.1 
                               +    Prom     84278 -     84337    4.3 
    86    47 Tu  1     .       +    CDS      84374 -     85114    736  ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
                               +    Term     85123 -     85160    5.1 
    87    48 Tu  1     .       -    CDS      85104 -     85661    669  ## COG3054 Predicted transcriptional regulator
                               -    Prom     85835 -     85894    5.4 
                               +    Prom     85775 -     85834    5.0 
    88    49 Tu  1     .       +    CDS      85986 -     86192    271  ## G2583_5047 hypothetical protein
                               +    Term     86217 -     86249    6.3 
                               -    Term     86205 -     86237    6.3 
    89    50 Tu  1     .       -    CDS      86254 -     87597   1536  ## COG1253 Hemolysins and related proteins containing CBS domains
                               -    Prom     87701 -     87760    3.4 
                               -    Term     87762 -     87798   -1.0 
    90    51 Tu  1     .       -    CDS      87920 -     88558    676  ## COG0225 Peptide methionine sulfoxide reductase
                               -    Prom     88614 -     88673    3.3 
    91    52 Op  1     .       +    CDS      88633 -     88794     65  ## EcSMS35_4698 hypothetical protein
    92    52 Op  2  16/0.000   +    CDS      88764 -     90497   1642  ## COG0729 Outer membrane protein
    93    52 Op  3   6/0.189   +    CDS      90494 -     94273   4084  ## COG2911 Uncharacterized protein conserved in bacteria
    94    52 Op  4     .       +    CDS      94276 -     94617    230  ## COG2105 Uncharacterized conserved protein
                               +    Term     94627 -     94662    4.1 
    95    53 Tu  1     .       -    CDS      94996 -     95526    717  ## COG0221 Inorganic pyrophosphatase
                               -    Prom     95623 -     95682    4.8 
                               +    Prom     95608 -     95667    4.3 
    96    54 Op  1  16/0.000   +    CDS      95836 -     96792   1133  ## COG1879 ABC-type sugar transport system, periplasmic component
                               +    Term     96850 -     96898    0.1 
                               +    Prom     96844 -     96903    2.7 
    97    54 Op  2  21/0.000   +    CDS      96932 -     98434    207  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
    98    54 Op  3  11/0.054   +    CDS      98448 -     99470   1088  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
    99    54 Op  4     .       +    CDS      99457 -    100452   1147  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
                               -    Term    100444 -    100477    6.1 
   100    55 Tu  1     .       -    CDS     100485 -    101483   1113  ## COG0158 Fructose-1,6-bisphosphatase
                               -    Prom    101539 -    101598    2.2 
                               +    Prom    101431 -    101490    4.9 
   101    56 Tu  1     .       +    CDS     101659 -    103032   1714  ## COG0773 UDP-N-acetylmuramate-alanine ligase
                               +    Term    103080 -    103131    5.9 
   102    57 Tu  1     .       -    CDS     103188 -    103739    769  ## COG3028 Uncharacterized protein conserved in bacteria
                               -    Prom    103760 -    103819    8.3 
                               +    Prom    103731 -    103790    2.9 
   103    58 Op  1     .       +    CDS     103834 -    105186   1396  ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs
                               +    Prom    105288 -    105347    2.4 
   104    58 Op  2     .       +    CDS     105369 -    105755    568  ## COG3783 Soluble cytochrome b562
                               +    Term    105764 -    105807   11.7 
                               -    Term    105578 -    105619   -0.5 
   105    59 Tu  1     .       -    CDS     105800 -    106264    430  ## COG0602 Organic radical activating enzymes
                               -    Prom    106328 -    106387    4.3 
                               -    Term    106302 -    106346    4.1 
   106    60 Tu  1     .       -    CDS     106422 -    108560   2517  ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase
                               -    Prom    108739 -    108798    6.5 
                               -    Term    108904 -    108941    4.4 
   107    61 Op  1   9/0.135   -    CDS     108954 -    110609   1396  ## COG0366 Glycosidases
   108    61 Op  2   7/0.162   -    CDS     110659 -    112077   1577  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               -    Prom    112129 -    112188    4.4 
                               -    Term    112133 -    112159   -1.0 
   109    62 Tu  1     .       -    CDS     112199 -    113146    808  ## COG1609 Transcriptional regulators
                               -    Prom    113180 -    113239    7.1 
   110    63 Tu  1     .       +    CDS     113525 -    116221   2822  ## COG0474 Cation transport ATPase
                               +    Term    116344 -    116380    2.4 
   111    64 Tu  1   6/0.189   -    CDS     116427 -    116813    551  ## COG0251 Putative translation initiation inhibitor, yjgF family
                               -    Term    116828 -    116867    5.0 
   112    65 Op  1  19/0.000   -    CDS     116886 -    117347    526  ## COG1781 Aspartate carbamoyltransferase, regulatory subunit
   113    65 Op  2     .       -    CDS     117360 -    118295   1006  ## COG0540 Aspartate carbamoyltransferase, catalytic chain
   114    66 Tu  1     .       -    CDS     118714 -    119109    245  ## COG0251 Putative translation initiation inhibitor, yjgF family
                               -    Prom    119177 -    119236    2.0 
                               -    Term    119182 -    119221    2.1 
   115    67 Tu  1     .       -    CDS     119240 -    119953    274  ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17
                               -    Prom    119977 -    120036    5.5 
                               +    Prom    119939 -    119998    5.0 
   116    68 Tu  1     .       +    CDS     120024 -    120617    310  ## COG1309 Transcriptional regulator
                               +    Prom    120673 -    120732    2.6 
   117    69 Tu  1     .       +    CDS     120762 -    121214    582  ## COG2731 Beta-galactosidase, beta subunit
                               +    Term    121223 -    121262    4.3 
                               +    Prom    121229 -    121288    8.0 
   118    70 Tu  1     .       +    CDS     121337 -    122848    718  ## ECO26_5422 hypothetical protein
                               +    Term    122975 -    123014    2.0 
                               -    Term    122959 -    123004    2.7 
   119    71 Tu  1     .       -    CDS     123017 -    124030   1000  ## COG0078 Ornithine carbamoyltransferase
                               -    Prom    124064 -    124123    6.3 
                               +    Prom    124016 -    124075    3.5 
   120    72 Tu  1     .       +    CDS     124192 -    124608    722  ## COG3076 Uncharacterized protein conserved in bacteria
                               +    Term    124623 -    124660    1.6 
                               -    Term    124611 -    124648    2.4 
   121    73 Tu  1     .       -    CDS     124654 -    125157    570  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
                               -    Prom    125285 -    125344    5.3 
                               +    Prom    125129 -    125188    5.7 
   122    74 Op  1     .       +    CDS     125350 -    125781    262  ## COG4269 Predicted membrane protein
   123    74 Op  2     .       +    CDS     125806 -    126546    305  ## COG4269 Predicted membrane protein
                               +    Term    126558 -    126591    5.2 
                               -    Term    126543 -    126580    7.8 
   124    75 Op  1   5/0.297   -    CDS     126600 -    129455   3483  ## COG0525 Valyl-tRNA synthetase
   125    75 Op  2  12/0.054   -    CDS     129455 -    129898    417  ## COG2927 DNA polymerase III, chi subunit
                               -    Prom    130022 -    130081    2.8 
   126    76 Tu  1     .       -    CDS     130252 -    131763   1681  ## COG0260 Leucyl aminopeptidase
                               -    Prom    131922 -    131981    5.4 
                               +    Prom    131943 -    132002    3.8 
   127    77 Op  1  22/0.000   +    CDS     132051 -    133130    962  ## COG0795 Predicted permeases
   128    77 Op  2     .       +    CDS     133130 -    134212   1440  ## COG0795 Predicted permeases
                               +    Term    134217 -    134254    2.4 
                               -    Term    134209 -    134235   -1.0 
   129    78 Op  1   1/0.919   -    CDS     134331 -    135833   1403  ## COG0433 Predicted ATPase
                               -    Prom    135853 -    135912    3.8 
   130    78 Op  2     .       -    CDS     135963 -    136982   1204  ## COG1064 Zn-dependent alcohol dehydrogenases
                               -    Prom    137203 -    137262   80.3 
                               +   TRNA     137178 -    137262   79.1  # Leu CAA 0 0
                               +    Prom    137180 -    137239   80.3 
   131    79 Tu  1     .       +    CDS     137353 -    139263    621  ## COG0582 Integrase
                               +    Term    139293 -    139334    7.9 
                               -    Term    139111 -    139152    1.4 
   132    80 Tu  1     .       -    CDS     139396 -    139728    155  ## UTI89_C0287 hypothetical protein
                               +    Prom    141187 -    141246    2.7 
   133    81 Op  1     .       +    CDS     141393 -    141953    405  ## COG1961 Site-specific recombinases, DNA invertase Pin homologs
   134    81 Op  2     .       +    CDS     141967 -    142812    150  ## GAU_0079 hypothetical protein
                               +    Term    142846 -    142883   -0.7 
   135    82 Tu  1     .       -    CDS     142873 -    143367    278  ## Pecwa_3422 hypothetical protein
                               -    Prom    143492 -    143551    3.3 
                               +    Prom    143451 -    143510    3.1 
   136    83 Tu  1     .       +    CDS     143608 -    144072    235  ## COG1396 Predicted transcriptional regulators
                               +    Term    144184 -    144232    2.7 
   137    84 Tu  1     .       +    CDS     145350 -    145934    193  ## ECS88_4853 conserved hypothetical protein, putative phage-related protein
                               +    Term    145953 -    145986    3.4 
   138    85 Tu  1     .       -    CDS     145983 -    146555     75  ## ECS88_4854 putative lysogenic conversion protein from bacteriophage P2-EC53
Predicted protein(s)
>gi|223713523|gb|ACDM01000075.1| GENE     1       357  -      1619    370    420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 49     401      60     402     406 147  28 4e-34
MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS
ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW
AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD
AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK
>gi|223713523|gb|ACDM01000075.1| GENE     2      1683  -      1904    100     73 aa, chain - ## HITS:1  COG:no KEGG:EC55989_4689 NR:ns ## KEGG: EC55989_4689 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      73      10      82      82     127   93.0  2e-28
MRPVARIAQSVEQGIENPRVLGSIPSPGTKFISTDLHGGPFFIPGRHDLSVLPPNQFYRT
QPDSPHINLIVWV
>gi|223713523|gb|ACDM01000075.1| GENE     3      1999  -      2574    754    191 aa, chain - ## HITS:1  COG:ECs5116 KEGG:ns NR:ns ## COG: ECs5116 COG1309 # Protein_GI_number: 15834370 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     191       9     199     199     368   99.0  1e-102
MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPDKEAILYDALRYLSQQI
DVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIAACTFYPDPGHPIHQLADQ
QKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRMLVNRSQADVDTAHRLAEDILR
FARCRQGGALT
>gi|223713523|gb|ACDM01000075.1| GENE     4      2611  -      4308   1510    565 aa, chain - ## HITS:1  COG:dsbD KEGG:ns NR:ns ## COG: dsbD COG4232 # Protein_GI_number: 16131961 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Escherichia coli K12 # 1     565       1     565     565    1102  100.0  0
MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYL
YRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQ
GCADAGFCYPPETKTVPLSEVVANNAAPQPVSVPQQEQPTAQLPFSALWALLIGIGIAFT
PCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMALTYTALGLVVAAAGLQFQAALQ
HPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTLMSNRQQGGSPGGVFVMGAIAGLI
CSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRLLPKSGPWMEQ
VKTAFGFVILALPVFLLERVIGDVWGLRLWSALGVAFFGWAFITSLQAKRGWMRIVQIIL
LAAALVSVRPLQDWAFGATHTAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWC
VACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQ
EHPQARVTGFMDAETFSAHLRDRQP
>gi|223713523|gb|ACDM01000075.1| GENE     5      4284  -      4622    208    112 aa, chain - ## HITS:1  COG:ECs5118 KEGG:ns NR:ns ## COG: ECs5118 COG1324 # Protein_GI_number: 15834372 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tolerance to divalent cations # Organism: Escherichia coli O157:H7 # 1     112       1     112     112     198  100.0  2e-51
MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEY
EVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR
>gi|223713523|gb|ACDM01000075.1| GENE     6      4738  -      6039   1400    433 aa, chain - ## HITS:1  COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1     433       1     433     433     705  100.0  0
MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAI
SAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAK
EQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVL
VMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIY
AIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICI
LGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALA
LNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVAL
AVCFGFVLGSFML
>gi|223713523|gb|ACDM01000075.1| GENE     7      6157  -      7593   1497    478 aa, chain - ## HITS:1  COG:ECs5120 KEGG:ns NR:ns ## COG: ECs5120 COG1027 # Protein_GI_number: 15834374 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Escherichia coli O157:H7 # 1     478      16     493     493     932  100.0  0
MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM
ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE
LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVE
FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN
TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL
LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ
LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG
HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESEQ
>gi|223713523|gb|ACDM01000075.1| GENE     8      7930  -      8406    343    158 aa, chain + ## HITS:1  COG:yjeG KEGG:ns NR:ns ## COG: yjeG COG3030 # Protein_GI_number: 16132265 # Func_class: R General function prediction only # Function: Protein affecting phage T7 exclusion by the F plasmid # Organism: Escherichia coli K12 # 1     158       1     158     158     241  100.0  3e-64
MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQ
KMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSR
MPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD
>gi|223713523|gb|ACDM01000075.1| GENE     9      8422  -      9678   1159    418 aa, chain - ## HITS:1  COG:yjeH KEGG:ns NR:ns ## COG: yjeH COG0531 # Protein_GI_number: 16131966 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     418       1     418     418     702  100.0  0
MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPVLIILVFPIAIVFA
ILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPAALQIAAGFGQAMFGWHSW
QLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIVAIWWAGDIKPANIPFPAPGN
IELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWGCTVVVL
HFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGYLACFASLNIYIQSFARLVWSQAQH
NPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIHALEINLDALIIYANGIFIMIYLLCML
AGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKSLYALIMLAGLWLLLPKRKTPENGITT
>gi|223713523|gb|ACDM01000075.1| GENE    10      9954  -     10247    479     97 aa, chain + ## HITS:1  COG:ECs5123 KEGG:ns NR:ns ## COG: ECs5123 COG0234 # Protein_GI_number: 15834377 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Escherichia coli O157:H7 # 1      97       1      97      97     158  100.0  2e-39
MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVK
VGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA
>gi|223713523|gb|ACDM01000075.1| GENE    11     10291  -     11937   2383    548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1     548       1     547     547 922  87 0.0
MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGI
DKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDG
TGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV
AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTV
ISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDY
DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI
RVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNA
ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGMGG
MGGMGGMM
>gi|223713523|gb|ACDM01000075.1| GENE    12     12075  -     12428    359    117 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_4377 NR:ns ## KEGG: ECIAI1_4377 # Name: yjeI # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1     117       1     117     117     198  100.0  6e-50
MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQ
HGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN
>gi|223713523|gb|ACDM01000075.1| GENE    13     12631  -     13500    882    289 aa, chain - ## HITS:1  COG:no KEGG:JW4105 NR:ns ## KEGG: JW4105 # Name: yjeJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     289       1     289     289     557  100.0  1e-157
MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELRDLLIALESRLHQKHKL
DAAAHLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNTLELTDNQGENLTFVLTLH
DGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSLLDFLPLYDVDCQDNGNLEYD
TYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKTREATPGKEIEAITRRMLDFSPR
LKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHLRVQSTSKTAPQAK
>gi|223713523|gb|ACDM01000075.1| GENE    14     13895  -     14923    881    342 aa, chain - ## HITS:1  COG:yjeK KEGG:ns NR:ns ## COG: yjeK COG1509 # Protein_GI_number: 16131971 # Func_class: E Amino acid transport and metabolism # Function: Lysine 2,3-aminomutase # Organism: Escherichia coli K12 # 1     342       1     342     342     683  100.0  0
MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDAEEKLLAGRSAKKLFALRVPRSFI
DRMEKGNPDDPLLRQVLTSQDEFVIAPGFSTDPLEEQHSVVPGLLHKYHNRALLLVKGGC
AVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEMIFSGGDPLMAKDHELDWLLT
QLEAIPHIKRLRIHSRLPIVIPARITEALVECFARSTLQILLVNHINHANEVDETFRQAM
AKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSD
DEARQIMRELLTLVSGYLVPKLAREIGGEPSKTPLDLQLRQQ
>gi|223713523|gb|ACDM01000075.1| GENE    15     14965  -     15531    627    188 aa, chain + ## HITS:1  COG:ECs5128 KEGG:ns NR:ns ## COG: ECs5128 COG0231 # Protein_GI_number: 15834382 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Escherichia coli O157:H7 # 1     188       1     188     188     377  100.0  1e-105
MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTD
SAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNG
QPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRS
GEYVSRVK
>gi|223713523|gb|ACDM01000075.1| GENE    16     15819  -     15965    120     48 aa, chain + ## HITS:1  COG:STM4336 KEGG:ns NR:ns ## COG: STM4336 COG5510 # Protein_GI_number: 16767585 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Salmonella typhimurium LT2 # 1      48       1      48      48      62   95.0  2e-10
MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ
>gi|223713523|gb|ACDM01000075.1| GENE    17     16141  -     16458    410    105 aa, chain + ## HITS:1  COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1     105      51     155     155     160  100.0  4e-40
MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKSLPVGTAYA
VWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH
>gi|223713523|gb|ACDM01000075.1| GENE    18     16455  -     16988    721    177 aa, chain - ## HITS:1  COG:ECs5130 KEGG:ns NR:ns ## COG: ECs5130 COG3040 # Protein_GI_number: 15834384 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Bacterial lipocalin # Organism: Escherichia coli O157:H7 # 1     177       1     177     177     368  100.0  1e-102
MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKV
TATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIA
LDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS
>gi|223713523|gb|ACDM01000075.1| GENE    19     17077  -     18210    853    377 aa, chain - ## HITS:1  COG:ampC KEGG:ns NR:ns ## COG: ampC COG1680 # Protein_GI_number: 16131975 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 1     377       1     377     377     739  100.0  0
MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWG
YADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGI
TLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVK
PSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVK
STIEDMARWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSII
NGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNY
PNPARVDAAWQILNALQ
>gi|223713523|gb|ACDM01000075.1| GENE    20     18273  -     18632    423    119 aa, chain - ## HITS:1  COG:ECs5132 KEGG:ns NR:ns ## COG: ECs5132 COG3080 # Protein_GI_number: 15834386 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit D # Organism: Escherichia coli O157:H7 # 1     119       1     119     119     208  100.0  2e-54
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ
SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
>gi|223713523|gb|ACDM01000075.1| GENE    21     18643  -     19038    514    131 aa, chain - ## HITS:1  COG:ECs5133 KEGG:ns NR:ns ## COG: ECs5133 COG3029 # Protein_GI_number: 15834387 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit C # Organism: Escherichia coli O157:H7 # 1     131       1     131     131     225  100.0  2e-59
MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF
VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA
TIVILFVALYW
>gi|223713523|gb|ACDM01000075.1| GENE    22     19049  -     19783    876    244 aa, chain - ## HITS:1  COG:ECs5134 KEGG:ns NR:ns ## COG: ECs5134 COG0479 # Protein_GI_number: 15834388 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Escherichia coli O157:H7 # 1     244       1     244     244     516  100.0  1e-146
MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRM
AICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPY
IIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRY
NEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIAT
LKPR
>gi|223713523|gb|ACDM01000075.1| GENE    23     19776  -     21584   2006    602 aa, chain - ## HITS:1  COG:frdA KEGG:ns NR:ns ## COG: frdA COG1053 # Protein_GI_number: 16131979 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Escherichia coli K12 # 1     602       1     602     602    1170  100.0  0
MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH
DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM
KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT
LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS
GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR
KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG
GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN
GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL
AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC
TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA
NG
>gi|223713523|gb|ACDM01000075.1| GENE    24     21909  -     22886    992    325 aa, chain + ## HITS:1  COG:ECs5136 KEGG:ns NR:ns ## COG: ECs5136 COG2269 # Protein_GI_number: 15834390 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Truncated, possibly inactive, lysyl-tRNA synthetase (class II) # Organism: Escherichia coli O157:H7 # 1     325      11     335     335     662  100.0  0
MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRF
VGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRP
HYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN
VADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYY
KGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALG
VDRLVMLALGAETLAEVIAFSVDRA
>gi|223713523|gb|ACDM01000075.1| GENE    25     23150  -     24607   1394    485 aa, chain + ## HITS:1  COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     485      30     514     514     860  100.0  0
MIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWM
NNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVG
LLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINF
LASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGY
SLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARI
TGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVF
ILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAM
IATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNP
QWAVE
>gi|223713523|gb|ACDM01000075.1| GENE    26     24659  -     24973    262    104 aa, chain + ## HITS:1  COG:no KEGG:JW4118 NR:ns ## KEGG: JW4118 # Name: yjeN # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     104       1     104     104     211  100.0  5e-54
MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG
KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL
>gi|223713523|gb|ACDM01000075.1| GENE    27     24970  -     25284    261    104 aa, chain + ## HITS:1  COG:no KEGG:JW4119 NR:ns ## KEGG: JW4119 # Name: yjeO # Def: conserved inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     104       1     104     104     169  100.0  2e-41
MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMT
LPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL
>gi|223713523|gb|ACDM01000075.1| GENE    28     25313  -     28636   3632   1107 aa, chain - ## HITS:1  COG:yjeP KEGG:ns NR:ns ## COG: yjeP COG3264 # Protein_GI_number: 16131984 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1    1107       1    1107    1107    2058  100.0  0
MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERK
GSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMSTDALNQEILQVSSQLLDK
SRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDS
ARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERA
LESTELLAENSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVRQAL
NTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPLL
RQIHQADGQPLTAEQNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSNGQLEDALKE
VNEATHRYLFWTSDVRPMTIAWPLEIAQDLRRLISLDTFSQLGKASVMMLTSKETILPLF
GALILVGCSIYSRRYFTRFLERSAAKVGKVTQDHFWLTLRTLFWSILVASPLPVLWMTLG
YGLREAWPYPLAVAIGDGVTATVPLLWVVMICATFARPNGLFIAHFGWPRERVSRGMRYY
LMSIGLIVPLIMALMMFDNLDDREFSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKE
GSGDNITNHMLWNMMIGAPLVAILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRR
WMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLR
LVRSILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILV
FIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKL
QWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTIS
DWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLV
IDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQ
MRLESLNGKQTGRTLTSAGKGRQAGSL
>gi|223713523|gb|ACDM01000075.1| GENE    29     28658  -     29626   1019    322 aa, chain - ## HITS:1  COG:ECs5139 KEGG:ns NR:ns ## COG: ECs5139 COG0688 # Protein_GI_number: 15834393 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Escherichia coli O157:H7 # 1     322       1     322     322     664  100.0  0
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY
RTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAG
NYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPL
PAEEIEAEHDASPLVDDKKDQV
>gi|223713523|gb|ACDM01000075.1| GENE    30     29723  -     30775    963    350 aa, chain - ## HITS:1  COG:yjeQ KEGG:ns NR:ns ## COG: yjeQ COG1162 # Protein_GI_number: 16131986 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Escherichia coli K12 # 14     350       1     337     337     692   99.0  0
MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGD
VHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA
ANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIY
RNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDIS
DNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYR
DCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD
>gi|223713523|gb|ACDM01000075.1| GENE    31     30870  -     31415    786    181 aa, chain + ## HITS:1  COG:orn KEGG:ns NR:ns ## COG: orn COG1949 # Protein_GI_number: 16131987 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Escherichia coli K12 # 1     181      24     204     204     367  100.0  1e-102
MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDD
WNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM
PELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIK
L
>gi|223713523|gb|ACDM01000075.1| GENE    32     32194  -     33333    915    379 aa, chain - ## HITS:1  COG:yjeS KEGG:ns NR:ns ## COG: yjeS COG1600 # Protein_GI_number: 16131988 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1     379       1     379     379     784  100.0  0
MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWLDKQYHGEMDWMARHGM
LRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVSRYALGRDYHKLLRNRLKK
LGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKHSLILNREAGSFFFLGELLVD
IPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARRCISYLTIELEGAIPEELRPLMG
NRIYGCDDCQLICPWNRYSQLTTEEDFSPRKPLHAPELIELFAWSEEKFLKVTEGSAIRR
IGHLRWLRNIAVALGNAPWDETILTALESRKGEHPLLDEHIAWAIAQQIERRNACIVEVQ
LPKKQRLVRVIEKGLPRDA
>gi|223713523|gb|ACDM01000075.1| GENE    33     33347  -     34879   1051    510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 8     494       3     490     490 409  44 1e-113
MKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLRAGEAAFQVCRSAYPDARHWLV
LCGHGNNGGDGYVVARLAKAVGIEVTLLAQESDKPLPEEAALAREAWLNAGGEIHASNIV
WPESVDLIVDALLGTGLRQAPRESISQLIDHANSHPAPIVAVDIPSGLLAETGATPGAVI
NADHTITFIALKPGLLTGKARDVTGQLHFDSLGLDSWLAGQETKIQRFSAEQLSHWLKPR
RPTSHKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTARPELM
VHELTMDSLTESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD
KRHNRVITPHPGEAARLLGCSVAEIESDRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDAL
GIIDAGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGM
LATDLFSTLQRIVNPEVTDKNHDESSNSAP
>gi|223713523|gb|ACDM01000075.1| GENE    34     34851  -     35312    554    153 aa, chain + ## HITS:1  COG:ECs5144 KEGG:ns NR:ns ## COG: ECs5144 COG0802 # Protein_GI_number: 15834398 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Escherichia coli O157:H7 # 1     153       1     153     153     313  100.0  1e-85
MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKS
PTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLPDP
DVEIHIDYQAQGREARVSAVSSAGELLLARLAG
>gi|223713523|gb|ACDM01000075.1| GENE    35     35331  -     36668   1079    445 aa, chain + ## HITS:1  COG:amiB KEGG:ns NR:ns ## COG: amiB COG0860 # Protein_GI_number: 16131991 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli K12 # 1     445       1     445     445     817  100.0  0
MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVA
LDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYT
VVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRP
AARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL
TRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLE
QHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHK
RRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHP
MQSAPQGATAQTASTVTTPDRTLPN
>gi|223713523|gb|ACDM01000075.1| GENE    36     36678  -     38525   1717    615 aa, chain + ## HITS:1  COG:mutL KEGG:ns NR:ns ## COG: mutL COG0323 # Protein_GI_number: 16131992 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Escherichia coli K12 # 1     615       1     615     615    1161   99.0  0
MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG
CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA
WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL
ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV
ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD
VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR
NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA
PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVC
AQPLLIPLRLKVSAEEKSALEKAQPALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIP
ELIGYLAKQSVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERLCPQLVKTPPGGLL
QSVDLHPAIKALKDE
>gi|223713523|gb|ACDM01000075.1| GENE    37     38563  -     39468    512    301 aa, chain + ## HITS:1  COG:miaA KEGG:ns NR:ns ## COG: miaA COG0324 # Protein_GI_number: 16131993 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Escherichia coli K12 # 1     301      16     316     316     580  100.0  1e-165
MGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDP
SQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQ
QAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPY
QVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMW
SYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIA
G
>gi|223713523|gb|ACDM01000075.1| GENE    38     39554  -     39862    285    102 aa, chain + ## HITS:1  COG:ECs5148 KEGG:ns NR:ns ## COG: ECs5148 COG1923 # Protein_GI_number: 15834402 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Escherichia coli O157:H7 # 1     102       1     102     102     177  100.0  5e-45
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
>gi|223713523|gb|ACDM01000075.1| GENE    39     39938  -     41218    733    426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 50     398      55     407     425 286  46 3e-76
MFDRYDAGEQAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGE
GKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEG
KLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLER
VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID
VADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNT
VLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQALTER
LSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCKQEPA
LIDYLI
>gi|223713523|gb|ACDM01000075.1| GENE    40     41304  -     42563   1450    419 aa, chain + ## HITS:1  COG:ECs5150 KEGG:ns NR:ns ## COG: ECs5150 COG0330 # Protein_GI_number: 15834404 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1     419       1     419     419     672  100.0  0
MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKG
TGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKEAERGVVTRFGKFSHLVEP
GLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTNPEKYLYSVTSP
DDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQA
ARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILE
AQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGNTRKVLVNDKGGNLMVLPLDQMLK
GGNAPAAKSDNGASNLLRLPPASSSTTSGASNTSSTSQGDIMDQRRANAQRNDYQRQGE
>gi|223713523|gb|ACDM01000075.1| GENE    41     42566  -     43570   1342    334 aa, chain + ## HITS:1  COG:ECs5151 KEGG:ns NR:ns ## COG: ECs5151 COG0330 # Protein_GI_number: 15834405 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1     334       1     334     334     566  100.0  1e-161
MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIE
TVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLK
RKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAE
RVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRS
QGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSL
RAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
>gi|223713523|gb|ACDM01000075.1| GENE    42     43652  -     43849    247     65 aa, chain + ## HITS:1  COG:ECs5152 KEGG:ns NR:ns ## COG: ECs5152 COG3242 # Protein_GI_number: 15834406 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      65       1      65      65      80  100.0  6e-16
MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYML
RKTIG
>gi|223713523|gb|ACDM01000075.1| GENE    43     43953  -     45251   1520    432 aa, chain + ## HITS:1  COG:ECs5153 KEGG:ns NR:ns ## COG: ECs5153 COG0104 # Protein_GI_number: 15834407 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Escherichia coli O157:H7 # 1     432       1     432     432     867  100.0  0
MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGI
LRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREK
ARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE
AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT
SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA
TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP
LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR
TETMILRDPFDA
>gi|223713523|gb|ACDM01000075.1| GENE    44     45528  -     45881    246    117 aa, chain + ## HITS:1  COG:ECs5154 KEGG:ns NR:ns ## COG: ECs5154 COG1959 # Protein_GI_number: 15834408 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     117      25     141     141     231  100.0  3e-61
MTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELE
PLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE
>gi|223713523|gb|ACDM01000075.1| GENE    45     45920  -     48361   1250    813 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 21     728       4     705     730 486  37 1e-136
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
>gi|223713523|gb|ACDM01000075.1| GENE    46     48541  -     49272    455    243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3     242       7     246     255 179  40 5e-44
MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDE
KSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG
VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH
TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR
QRS
>gi|223713523|gb|ACDM01000075.1| GENE    47     49399  -     49800    370    133 aa, chain + ## HITS:1  COG:ECs5157 KEGG:ns NR:ns ## COG: ECs5157 COG3789 # Protein_GI_number: 15834411 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     133       1     133     133     230  100.0  5e-61
MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS
SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN
ALDLAEITEEYSH
>gi|223713523|gb|ACDM01000075.1| GENE    48     49819  -     50517    908    232 aa, chain + ## HITS:1  COG:yjfJ KEGG:ns NR:ns ## COG: yjfJ COG1842 # Protein_GI_number: 16132004 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Escherichia coli K12 # 1     232       1     232     232     291  100.0  7e-79
MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDKAGKSRVDLLARVKLSH
DKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLENLITAEEQVLSNLEVSRDG
VEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTVGASSSVSTAAESLKRLQTRQ
AERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSSAQDVLARLQRQQGE
>gi|223713523|gb|ACDM01000075.1| GENE    49     50568  -     51227    705    219 aa, chain + ## HITS:1  COG:no KEGG:JW4141 NR:ns ## KEGG: JW4141 # Name: yjfK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     219       1     219     219     421  100.0  1e-116
MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDELLIALPGEEFTVAAVSH
IDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYEESYGISKESHWREAINAK
AMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNHAKWEVHNFTMGYQRQVTEDT
YEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHIIG
>gi|223713523|gb|ACDM01000075.1| GENE    50     51245  -     51643    362    132 aa, chain + ## HITS:1  COG:ECs5160 KEGG:ns NR:ns ## COG: ECs5160 COG3766 # Protein_GI_number: 15834414 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     132       1     132     132     220  100.0  6e-58
MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVI
PLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAAL
AGGIFNAACMTW
>gi|223713523|gb|ACDM01000075.1| GENE    51     51653  -     52291    350    212 aa, chain + ## HITS:1  COG:yjfM KEGG:ns NR:ns ## COG: yjfM COG5463 # Protein_GI_number: 16132007 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1     212       1     212     212     387   99.0  1e-108
MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLALMGGAAFFVLKGCSDSS
DVDNDGDGTFYATVQDCIDDGNNADICARGWNNAKTAFYADVPKNMTQQNCQSKYENCYY
DNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASRPVWRSTSGDYSWRSGSGKKE
SYSSGGFTTKKASTVSRGGYGRSSSARGHWGG
>gi|223713523|gb|ACDM01000075.1| GENE    52     52294  -     53457   1164    387 aa, chain + ## HITS:1  COG:ECs5162 KEGG:ns NR:ns ## COG: ECs5162 COG0754 # Protein_GI_number: 15834416 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 1     387       1     387     387     798   99.0  0
MLRHNVPVRRDLDQIAADNGFDFHIIDNEIYWDESRAYRFTLRQIEEQIEKPTAELHQMC
LEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNAD
TPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLISRFSELYSREPFYFCCCQDT
DEDRSTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
DNGPLLRKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYV
RKPLYSREGGNVTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDE
ACGMGIREDNTLITKDTSRFVPHYIAG
>gi|223713523|gb|ACDM01000075.1| GENE    53     53541  -     55166   1239    541 aa, chain + ## HITS:1  COG:aidB KEGG:ns NR:ns ## COG: aidB COG1960 # Protein_GI_number: 16132009 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli K12 # 1     541       6     546     546    1107   99.0  0
MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGR
LANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAAR
FMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLI
GMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFV
PRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGQEGEGIRLILKMGGMTRF
DCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLAR
AWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPV
NSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEE
LGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC
V
>gi|223713523|gb|ACDM01000075.1| GENE    54     55283  -     55570    247     95 aa, chain - ## HITS:1  COG:no KEGG:SSON_4370 NR:ns ## KEGG: SSON_4370 # Name: yjfN # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      95       6     100     100     172  100.0  2e-42
MELTMKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERI
VALKADEQGASWYRIITMYEDQQPDNWRVQAILYA
>gi|223713523|gb|ACDM01000075.1| GENE    55     55707  -     56036    221    109 aa, chain - ## HITS:1  COG:no KEGG:APECO1_2203 NR:ns ## KEGG: APECO1_2203 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     109      34     142     142     201   99.0  8e-51
MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVS
TMVRGSPDDALAEIKAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK
>gi|223713523|gb|ACDM01000075.1| GENE    56     56218  -     56967    510    249 aa, chain + ## HITS:1  COG:yjfP KEGG:ns NR:ns ## COG: yjfP COG1073 # Protein_GI_number: 16132012 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1     249       1     249     249     495   98.0  1e-140
MIEIESRELADIPVLHAYPVGQKDTPLPCAIFYHGFTSSSLVYSYFAVALAQAGLRVIMP
DAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEEKWLLDDRLAVGGASMGAMT
ALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNH
LEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDA
AVTFFRQHL
>gi|223713523|gb|ACDM01000075.1| GENE    57     56964  -     57719    855    251 aa, chain - ## HITS:1  COG:ECs5167 KEGG:ns NR:ns ## COG: ECs5167 COG1349 # Protein_GI_number: 15834421 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1     251       1     251     251     482  100.0  1e-136
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAIT
QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII
TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGL
YKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ
LEAQGVSILRV
>gi|223713523|gb|ACDM01000075.1| GENE    58     57827  -     58891   1277    354 aa, chain - ## HITS:1  COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1     354       3     356     356     752   99.0  0
MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCV
DFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQVDAVLATHDHN
DHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHAL
DAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEH
QIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWE
MKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDDCFTIEPDLPFKSFL
>gi|223713523|gb|ACDM01000075.1| GENE    59     59246  -     60643   1767    465 aa, chain + ## HITS:1  COG:sgaT KEGG:ns NR:ns ## COG: sgaT COG3037 # Protein_GI_number: 16132015 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     465      20     484     484     806   99.0  0
MEILYNIFTVFFNQVMTNAPLLLGIVTCLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSG
ILTSTFKPVVAKMSEVYGINGAISDTYASMMATIDRMGDAYSWVGYAVLLALALNICYVL
LRRITGIRTIMLTGHIMFQQAGLIAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKP
TQEVTDGCGFSIGHQQQFASWIAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVM
TIFFGAILLSFGIDTVQAMAGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNG
ISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPM
FFSNATIGVFANHFGGWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPM
MQGFFSIGIAFMAVIIVIALAYMFFAGRALRAEEDAEKQLAEQSA
>gi|223713523|gb|ACDM01000075.1| GENE    60     60659  -     60964    336    101 aa, chain + ## HITS:1  COG:ECs5170 KEGG:ns NR:ns ## COG: ECs5170 COG3414 # Protein_GI_number: 15834424 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 1     101       1     101     101     196  100.0  6e-51
MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHI
AGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKEHFPQDVK
>gi|223713523|gb|ACDM01000075.1| GENE    61     60974  -     61438    617    154 aa, chain + ## HITS:1  COG:ECs5171 KEGG:ns NR:ns ## COG: ECs5171 COG1762 # Protein_GI_number: 15834425 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1     154       1     154     154     287   95.0  6e-78
MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYYQAILDAVEQHGPYFVL
APGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDILITMAAIDANTHQEVGIMQ
IVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA
>gi|223713523|gb|ACDM01000075.1| GENE    62     61452  -     62102    920    216 aa, chain + ## HITS:1  COG:ECs5172 KEGG:ns NR:ns ## COG: ECs5172 COG0269 # Protein_GI_number: 15834426 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Escherichia coli O157:H7 # 1     216       1     216     216     420  100.0  1e-117
MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL
ADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWE
QAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLF
KGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG
>gi|223713523|gb|ACDM01000075.1| GENE    63     62112  -     62966   1072    284 aa, chain + ## HITS:1  COG:ECs5173 KEGG:ns NR:ns ## COG: ECs5173 COG3623 # Protein_GI_number: 15834427 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli O157:H7 # 1     284       1     284     284     582  100.0  1e-166
MLSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLAL
VNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
VYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWF
QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
QSGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA
>gi|223713523|gb|ACDM01000075.1| GENE    64     62966  -     63652    822    228 aa, chain + ## HITS:1  COG:sgaE KEGG:ns NR:ns ## COG: sgaE COG0235 # Protein_GI_number: 16132020 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     228       1     228     228     464   99.0  1e-131
MQKLKQQVFEANMELPRYGLVTFTWGNVSAIDRERGLVVIKPSGVAYETMKAADMVVVDM
SGKVVEGEYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAGLAIPALGTTHADYF
FGDIPCTRGLSEEEVQGEYELNTGKVIIETLGNAEPLHTPGIVVYQHGPFAWGKDAHDAV
HNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRKHGPNAYYGQK
>gi|223713523|gb|ACDM01000075.1| GENE    65     63781  -     64056    313     91 aa, chain - ## HITS:1  COG:no KEGG:LF82_3468 NR:ns ## KEGG: LF82_3468 # Name: yjfY # Def: UPF0379 protein YjfY # Organism: E.coli_LF82 # Pathway: not_defined # 1      91       1      91      91     141  100.0  6e-33
MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEE
TDAQGATYYHVILMREPGSNGNMHASADIYR
>gi|223713523|gb|ACDM01000075.1| GENE    66     64384  -     64779    681    131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|188495956|ref|ZP_03003226.1| ribosomal protein S6 [Escherichia coli 53638] # 1     131       1     131     131 266  100 3e-70
MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYV
LMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANET
ADDADAGDSEE
>gi|223713523|gb|ACDM01000075.1| GENE    67     65105  -     65332    385     75 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18 [Escherichia coli O157:H7 str. Sakai] # 1      75       1      75      75 152  100 6e-36
MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIK
RARYLSLLPYTDRHQ
>gi|223713523|gb|ACDM01000075.1| GENE    68     65374  -     65823    720    149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804792|ref|NP_290833.1| 50S ribosomal protein L9 [Escherichia coli O157:H7 EDL933] # 1     149       1     149     149 281  100 9e-75
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE
VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG
VLRTTGEHEVSFQVHSEVFAKVIVNVVAE
>gi|223713523|gb|ACDM01000075.1| GENE    69     65935  -     66906    679    323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 [Lentisphaera araneosa HTCC2155] # 24     316      48     339     346 266  43 5e-70
MKIKVSAGIIGAVLMLSASQSWAVTLKLSHNQDKSHPVHKAMEFFAKKSKEYSNGDITIR
IYPNGTLGTQRETMELIRSGAIPLVKTNAAEMEAFENSYKLFSLPYLFRDRDHYYQVMQG
DIGRKILDSTKSKGYFGLTFYDGGARSFYGNKPVLKPDDLKGMKVRVQPSPGAVEMIKVM
GGNPTPLDYGELYTALQQGVVDMAENSVMALTTMRHGEVAKSFSLDEHTMVPDVVLMSNA
AFDKLSQENQAVILKAAKESMSYMKDLWSEEEKQEFAKLDKMGVKVYQVDKAPFIEKVQP
MYANFAKDNPALAPMLADIQAAK
>gi|223713523|gb|ACDM01000075.1| GENE    70     66959  -     68260   1260    433 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 5     432       4     430     431 489  55 1e-137
MDYWLPIIVLFGAFFFMLALGVPIVYAIGLSTLASISTQLDFNSALSVVSQKLASGLDSF
TLLAIPFFILSGNIMNHGGIARRLINFARILGGRLPGSLAHCNILANMLFGAISGSAVAS
AAAMGGVMHPQQVKEGYDPAFSTAVNVASAPTGLLIPPSNTLIVYSLVSGGTSIAALFLA
GYVPGILLGLALMVIAGIIAVRRGYPKPERPTLRQAGVAIWMAIPSIFLIILIMGGVLSG
IFTPTEASAIAVIYTLFLALVLYREISVKDLPKIFLESVITTAIVLLLIGSSMGMSWAMS
NADVPFLILDLLNTISDNPIIILLIINIILLIIGTFMDMTPAVLIFTPIFLPVVTELGMD
PIHFGIVMVLNMCIGICTPPVGSVLFVGCSVSKLPINKIIKPMLPFYAVMVLVLAMVTYI
PQISMALPRALGY
>gi|223713523|gb|ACDM01000075.1| GENE    71     68303  -     68779    268    158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1     148       1     148     164 107  37 2e-22
MRNIIRSINALLAALNITILAIIVACVTWQVAARFIFTSPSIFTDELSRLLFICLGLFGG
AYTAGQNRHLAIDLLPMMLKGKARRHLFLCIQIIVIIFATIIMVYGGGLLTMDTFDSGQT
SPALGWQMGYIYMSIPISGVLIIIYTIDMVLTELKQPL
>gi|223713523|gb|ACDM01000075.1| GENE    72     68800  -     70881   1624    693 aa, chain - ## HITS:1  COG:TM0427 KEGG:ns NR:ns ## COG: TM0427 COG1053 # Protein_GI_number: 15643193 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Thermotoga maritima # 29     689       5     664     664     357   35.0  4e-98
MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVDYPLWQTDALVVGSGAAGLRAAVEL
KRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAY
VEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGRATSCGPRTSRLMVKVLLEEV
QRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP
GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIY
SVDAEGNEYNFLADYYRTTQELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGR
QVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAPSPIERLQRMNPLSISLYKMH
GYDLTTQPLQFAMNNQHMNGGIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV
FAVRLARFIGCTQKRNIDGDIAQLVAPTLASIREIITQAHDNGTGMPLSVVREKIQARMS
DHAGFICHADKVRRATRDALLLSEFVQRHGLAIKHVGEVAELFMWRHMALTSAAVLTQLT
HYIDAGGGSRGARIILDRDGNSIPQTRNGFCDAWRFRSERTEDKKDKLLIHYCNGIFHVR
ETPVREFPIIRGIWFEKNWPGFLNGTIYQPQDE
>gi|223713523|gb|ACDM01000075.1| GENE    73     70878  -     72419   1696    513 aa, chain - ## HITS:1  COG:BH3898 KEGG:ns NR:ns ## COG: BH3898 COG4670 # Protein_GI_number: 15616460 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Bacillus halodurans # 3     507       4     507     525     416   46.0  1e-116
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
GDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGAG
RPGLFTHVGLGSFVDPRNGGGKSNECTTDELVELIEIDGETKLRYRPFKVDYAILRGTYA
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGG
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDITP
DGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
>gi|223713523|gb|ACDM01000075.1| GENE    74     72429  -     73205    780    258 aa, chain - ## HITS:1  COG:AF2273_2 KEGG:ns NR:ns ## COG: AF2273_2 COG1024 # Protein_GI_number: 11499854 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Archaeoglobus fulgidus # 16     255      17     259     262     162   34.0  5e-40
MSDQPVLFSRAAASCRLTLNREDKCHAINEEMIESLDHYLNEIENDTTLRLVELTATGDK
FFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNLPQLTVANLNGHTIGGGIELALCC
DIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGRQMLMLGKRLTAQEAQAANLI
DEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILALENKHADYPHQLLAGLMSATQDC
QQATRAFAEKSSVSFHNQ
>gi|223713523|gb|ACDM01000075.1| GENE    75     73215  -     74057    730    280 aa, chain - ## HITS:1  COG:SMc04130 KEGG:ns NR:ns ## COG: SMc04130 COG1082 # Protein_GI_number: 15963875 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Sinorhizobium meliloti # 11     280       6     274     274     271   50.0  7e-73
MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRRELQGEDLQQIAHQLAA
SNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAACYMQVVGGLPTGTKDLYE
AREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLCTLRQALDWCDELDPDGEFGL
GVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPTTDLVNDRGMPGDGVINIPSIRR
LVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRIAHYC
>gi|223713523|gb|ACDM01000075.1| GENE    76     74067  -     74858    869    263 aa, chain - ## HITS:1  COG:mlr3057 KEGG:ns NR:ns ## COG: mlr3057 COG1028 # Protein_GI_number: 13472685 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mesorhizobium loti # 4     263       2     253     253     206   43.0  3e-53
MKSTRPVAVITGAARGIGKGCALELARGGFNLLINDLPDADSVEKLHITQQECIAEGVEV
ICFPADVGDLSLHEEMLDAAQNLWGRLDCLLNNAGISVKKRGDLLDLEPDSFDQNIAINT
RAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIMLAMNRGEYTIAKTAVSAAARL
FAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAKGLVPWGRWGYPADIASTVRAMA
EGKLIYTCGQAVAIDGGLSMPRF
>gi|223713523|gb|ACDM01000075.1| GENE    77     75071  -     75718    543    215 aa, chain + ## HITS:1  COG:ytfA KEGG:ns NR:ns ## COG: ytfA COG1309 # Protein_GI_number: 16132027 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 108     215       1     108     108     210   99.0  2e-54
MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSKQTVYHHFGNKENLFIE
VLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANPWFLKIVHSENQSKGVHYA
KSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVY
HISMVSPQALEARRKVIKETILSWLLVDPSSTAHE
>gi|223713523|gb|ACDM01000075.1| GENE    78     75702  -     76340    495    212 aa, chain - ## HITS:1  COG:ytfB KEGG:ns NR:ns ## COG: ytfB COG3061 # Protein_GI_number: 16132028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell envelope opacity-associated protein A # Organism: Escherichia coli K12 # 1     212      13     224     224     363   99.0  1e-100
MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIILVVGFLLPSDDTPNAPVVT
REAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQP
DSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQN
ASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
>gi|223713523|gb|ACDM01000075.1| GENE    79     76559  -     77179    940    206 aa, chain + ## HITS:1  COG:ECs5185 KEGG:ns NR:ns ## COG: ECs5185 COG0545 # Protein_GI_number: 15834439 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1     206      54     259     259     395   99.0  1e-110
MTTPTFDTIEAQASYGIGLQVGQQLSESGLQGLLPEALVAGIADALEGKHPAVPVDVVHR
ALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTESGLQFRVINQGEGAIPART
DRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQELA
YGERGAGASIPPFSTLVFEVELLEIL
>gi|223713523|gb|ACDM01000075.1| GENE    80     77488  -     78900   1462    470 aa, chain + ## HITS:1  COG:ECs5186 KEGG:ns NR:ns ## COG: ECs5186 COG1113 # Protein_GI_number: 15834440 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1     470       1     470     470     851  100.0  0
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVY
MIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVV
AITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGL
VMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVIN
FVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVV
MLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCW
VCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK
>gi|223713523|gb|ACDM01000075.1| GENE    81     78945  -     79607    893    220 aa, chain - ## HITS:1  COG:ytfE KEGG:ns NR:ns ## COG: ytfE COG2846 # Protein_GI_number: 16132031 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Regulator of cell morphogenesis and NO signaling # Organism: Escherichia coli K12 # 1     220       1     220     220     424  100.0  1e-119
MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAE
QPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLT
MLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPP
PEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE
>gi|223713523|gb|ACDM01000075.1| GENE    82     79715  -     80680    896    321 aa, chain - ## HITS:1  COG:ECs5188 KEGG:ns NR:ns ## COG: ECs5188 COG0697 # Protein_GI_number: 15834442 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1     321       4     324     324     556   98.0  1e-158
MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLA
RRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKL
AWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARW
LRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNIQTPDFSLPFGPRPLVFISLMVAI
AVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGLLYTFLIRQQMPPLMTLSGIALLVV
GVVIAVRAKPEKPLTESVSES
>gi|223713523|gb|ACDM01000075.1| GENE    83     80789  -     81649    838    286 aa, chain - ## HITS:1  COG:ECs5190 KEGG:ns NR:ns ## COG: ECs5190 COG0702 # Protein_GI_number: 15834443 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1     285       1     285     286     469   98.0  1e-132
MIAITGATGQLGHYVIKSLMKTVPASQIVAIVRNPAKAQALTAQGITVRQADYGDEAALT
SALQGVEKLLLISSSEVGQRAPQHRNVINAAKTAGVKFIAYTSLLHADKSPLGLADEHIE
TEKMLADSGIVYTLLRNGWYTENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAAR
VISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSETDFAAALKSVGLPDGL
ADMLADSDVGASKGGLFDDSKTLSKLIGRPTTTLAESVSHLFNVNK
>gi|223713523|gb|ACDM01000075.1| GENE    84     81648  -     82118    456    156 aa, chain + ## HITS:1  COG:ytfH KEGG:ns NR:ns ## COG: ytfH COG1733 # Protein_GI_number: 16132034 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     156       1     156     156     305  100.0  2e-83
MGSLHRFVLCLNTLTPKLTFSKYVQKGKYEMSQVSLSQQLKEGNLFAEQCPSREVLKHVT
SRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEY
SLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA
>gi|223713523|gb|ACDM01000075.1| GENE    85     82241  -     84184   2052    647 aa, chain - ## HITS:1  COG:cpdB KEGG:ns NR:ns ## COG: cpdB COG0737 # Protein_GI_number: 16132035 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Escherichia coli K12 # 1     647       1     647     647    1266   99.0  0
MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKDTATEKFGLVRTASLIN
DARNEVKNSVLVDNGDLIQGSPLADYISAKGLKAGDVHPVYKALNTLDYTVGTLGNHEFN
YGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDTEVVDKDGKKQTLKIGYIGVV
PPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGADVVVVLAHSGLSADPYKVMAENS
VYYLSEIPGVNAIMFGHAHAVFPGKDFADIEGADIAKGTLNGVPAVMPGMWGDHLGVVDL
QLSNNSGKWQVTQAKAEARPIYDIANKKSLAAEDSKLVETLKADHDATRQFVSKPIGKSA
DNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQGDPDLAKLPVLSAAAPFKVGGRKNDPAS
YVEVEKGQLTFRNAADLYLYPNTLIVVKASGKEVKEWLECSAGQFNQIDPDNTKPQSLIN
WDGFRTYNFDVIDGVNYQIDVTQPARYDGECQMVNANAERIKNLTFNGKPIDPNAMFLVA
TNNYRAYGGKFAGTGDSHIAFASPDENRSVLAAWIADESKRAGEIHPAADNNWRLAPIAG
DKKLDIRFETSPSDKAAAFIKEKGQYPMNKVATDDIGFAIYQVDLSK
>gi|223713523|gb|ACDM01000075.1| GENE    86     84374  -     85114    736    246 aa, chain + ## HITS:1  COG:cysQ KEGG:ns NR:ns ## COG: cysQ COG1218 # Protein_GI_number: 16132036 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Escherichia coli K12 # 1     246       1     246     246     475   99.0  1e-134
MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAAHTVIMDGLRTLTPDIP
VLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIDHGKPILGVVYAPVM
NIMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHADAELKEYLQQLGEHQTTSIGS
SLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGAHVHDWQGKPLDYTPRESFLNPG
FRVSIY
>gi|223713523|gb|ACDM01000075.1| GENE    87     85104  -     85661    669    185 aa, chain - ## HITS:1  COG:ECs5194 KEGG:ns NR:ns ## COG: ECs5194 COG3054 # Protein_GI_number: 15834448 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     183       1     183     184     353   98.0  1e-97
MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
KKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQWAKDGALTQEEVQQVMDLLH
KLINK
>gi|223713523|gb|ACDM01000075.1| GENE    88     85986  -     86192    271     68 aa, chain + ## HITS:1  COG:no KEGG:G2583_5047 NR:ns ## KEGG: G2583_5047 # Name: ytfK # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      68      14      81      81     119  100.0  4e-26
MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQV
MRLQTEMA
>gi|223713523|gb|ACDM01000075.1| GENE    89     86254  -     87597   1536    447 aa, chain - ## HITS:1  COG:ECs5196 KEGG:ns NR:ns ## COG: ECs5196 COG1253 # Protein_GI_number: 15834450 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli O157:H7 # 1     447       1     447     447     876  100.0  0
MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTV
VQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLT
PKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDI
YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAE
HPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALE
SFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTP
IDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQL
LVTRIDSKATALSPKLPDAKDKEESVA
>gi|223713523|gb|ACDM01000075.1| GENE    90     87920  -     88558    676    212 aa, chain - ## HITS:1  COG:msrA KEGG:ns NR:ns ## COG: msrA COG0225 # Protein_GI_number: 16132041 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Escherichia coli K12 # 1     212       1     212     212     405  100.0  1e-113
MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLF
WQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHD
PAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPF
YYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA
>gi|223713523|gb|ACDM01000075.1| GENE    91     88633  -     88794     65     53 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_4698 NR:ns ## KEGG: EcSMS35_4698 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 12      53       1      42      42      84   97.0  8e-16
MNRSKVKHKKYLGFSLLFNPYYWIFVKPFNGVPGAGKKDIQEKMCAISDSYAV
>gi|223713523|gb|ACDM01000075.1| GENE    92     88764  -     90497   1642    577 aa, chain + ## HITS:1  COG:ECs5198 KEGG:ns NR:ns ## COG: ECs5198 COG0729 # Protein_GI_number: 15834452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Escherichia coli O157:H7 # 1     577       1     577     577    1169   99.0  0
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRAR
VDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTD
KDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWD
IDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTT
STSISAPEQILDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSG
WQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSRGGLMPTWGDSQRYSIDYSNTAW
GSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGV
GVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL
>gi|223713523|gb|ACDM01000075.1| GENE    93     90494  -     94273   4084   1259 aa, chain + ## HITS:1  COG:ECs5199 KEGG:ns NR:ns ## COG: ECs5199 COG2911 # Protein_GI_number: 15834453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1    1259       1    1259    1259    2434   99.0  0
MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDVGKVTGGWRDLTL
SDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEE
DSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLI
ALPKVAEVAQEEVVEPKIENPQPEEKPLGETLKDLFSRPVLPEMTDVHLPLNLNIEEFKG
EQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVDITLN
STLNVEPLKGEKVKLKVGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPLNVEVNSKQ
IYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGLEIPPATITLDAKGNEQQVNLDK
LTVAALEGKTELKALLDWQQAISWRGELTLNGINTAKEIPEWPSKLNGLIKTRGSLYGGT
WQMEVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLELGPNSAEVKGELGVKDLNL
DATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSVAQVRVEGDI
KSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFD
RKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTID
AGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNV
QVTQTVNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGG
NVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFD
MQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPM
VRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPK
TASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQ
DLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQ
QAALSYLLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGD
SSQVVVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF
>gi|223713523|gb|ACDM01000075.1| GENE    94     94276  -     94617    230    113 aa, chain + ## HITS:1  COG:ECs5200 KEGG:ns NR:ns ## COG: ECs5200 COG2105 # Protein_GI_number: 15834454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     113       1     113     113     226  100.0  1e-59
MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDN
ATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK
>gi|223713523|gb|ACDM01000075.1| GENE    95     94996  -     95526    717    176 aa, chain - ## HITS:1  COG:ECs5204 KEGG:ns NR:ns ## COG: ECs5204 COG0221 # Protein_GI_number: 15834458 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     346   98.0  1e-95
MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYIN
HTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLIAVPHTKLSKEYDH
IKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK
>gi|223713523|gb|ACDM01000075.1| GENE    96     95836  -     96792   1133    318 aa, chain + ## HITS:1  COG:ECs5205 KEGG:ns NR:ns ## COG: ECs5205 COG1879 # Protein_GI_number: 15834459 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     318       1     318     318     571   99.0  1e-163
MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD
GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS
LYMTTVTADNILEGKLIGDWLIKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN
IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK
DILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL
YLPDTAKEELEKKKNMGY
>gi|223713523|gb|ACDM01000075.1| GENE    97     96932  -     98434    207    500 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 268     477       9     214     245 84  26 3e-15
MTTNQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYH
ADRGTIWLEGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRK
EMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQE
VELLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKM
MLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRT
ETAEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENII
LALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTR
PQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIIMRDRKQ
VAEIPLAELSVPAIMNAIAA
>gi|223713523|gb|ACDM01000075.1| GENE    98     98448  -     99470   1088    340 aa, chain + ## HITS:1  COG:ECs5207 KEGG:ns NR:ns ## COG: ECs5207 COG1172 # Protein_GI_number: 15834461 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     340       2     341     341     495   99.0  1e-140
MPQSLPDTTPPKRRFRWPTGMPQLAALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILN
RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILA
GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPDLSWFGSGSLLFLPTP
VIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAG
IIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILL
SGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
>gi|223713523|gb|ACDM01000075.1| GENE    99     99457  -    100452   1147    331 aa, chain + ## HITS:1  COG:yjfF KEGG:ns NR:ns ## COG: yjfF COG1172 # Protein_GI_number: 16132053 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 9     331       1     323     323     520   99.0  1e-147
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
IDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA
HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL
LFIFIALQRGLTVLWENRQSSPVTRVNIAQR
>gi|223713523|gb|ACDM01000075.1| GENE   100    100485  -    101483   1113    332 aa, chain - ## HITS:1  COG:fbp KEGG:ns NR:ns ## COG: fbp COG0158 # Protein_GI_number: 16132054 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Escherichia coli K12 # 1     332       1     332     332     685  100.0  0
MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE
VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV
NVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTY
DPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYI
GSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKASDGKERILDI
IPETLHQRRSFFVGNDHMVEDVERFIREFPDA
>gi|223713523|gb|ACDM01000075.1| GENE   101    101659  -    103032   1714    457 aa, chain + ## HITS:1  COG:ZyjfG KEGG:ns NR:ns ## COG: ZyjfG COG0773 # Protein_GI_number: 15804823 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Escherichia coli O157:H7 EDL933 # 1     457       1     457     457     953  100.0  0
MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEKQGIELIQGYDASQLDP
QPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGM
ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT
LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL
VGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPAD
AANALGSFINARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP
RSNTMKMGICKDDLAPSLGRADEVFLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMV
VKTAQPGDHILVMSNGGFGGIHQKLLDGLAKKAEAAQ
>gi|223713523|gb|ACDM01000075.1| GENE   102    103188  -    103739    769    183 aa, chain - ## HITS:1  COG:ECs5211 KEGG:ns NR:ns ## COG: ECs5211 COG3028 # Protein_GI_number: 15834465 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     183       1     183     183     271  100.0  7e-73
MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLD
ADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLEN
LRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAE
NEG
>gi|223713523|gb|ACDM01000075.1| GENE   103    103834  -    105186   1396    450 aa, chain + ## HITS:1  COG:ECs5212 KEGG:ns NR:ns ## COG: ECs5212 COG0312 # Protein_GI_number: 15834466 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Escherichia coli O157:H7 # 1     450       1     450     450     885  100.0  0
MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEF
NSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFD
APDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQ
GYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLS
TMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKG
LASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSF
EQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWR
NIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
>gi|223713523|gb|ACDM01000075.1| GENE   104    105369  -    105755    568    128 aa, chain + ## HITS:1  COG:STM4439 KEGG:ns NR:ns ## COG: STM4439 COG3783 # Protein_GI_number: 16767685 # Func_class: C Energy production and conversion # Function: Soluble cytochrome b562 # Organism: Salmonella typhimurium LT2 # 1     128       1     128     128     174   85.0  4e-44
MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDTLKVVEKADNAAQVKDALTKMRAAAL
DAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTR
NAYHQKYR
>gi|223713523|gb|ACDM01000075.1| GENE   105    105800  -    106264    430    154 aa, chain - ## HITS:1  COG:ECs5214 KEGG:ns NR:ns ## COG: ECs5214 COG0602 # Protein_GI_number: 15834468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Escherichia coli O157:H7 # 1     154       1     154     154     319   98.0  1e-87
MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN
DTRIKRQGISLSGGDPLHPQNVPDILKLVKRIRAECPDKDIWVWTGYKLDDLNAAQMQVV
DLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR
>gi|223713523|gb|ACDM01000075.1| GENE   106    106422  -    108560   2517    712 aa, chain - ## HITS:1  COG:nrdD KEGG:ns NR:ns ## COG: nrdD COG1328 # Protein_GI_number: 16132060 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Escherichia coli K12 # 1     712       1     712     712    1505   99.0  0
MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSEQMQGRNQVDINE
IQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGLVEQTNASLLNENANK
DSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIHYHDLDYSPFFPMFNCMLIDL
KGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTASY
NKHRKTAEEWSIPDAEGYANSRTIKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTS
WESRLIQESILRNRIAGLGKNRKTAVFPKLVFAIRDGLNHKKGDPNYDIKQLALECASKR
MYPDILNYDQVVKVTGSFKTPMGCRSFLGVWENENGEQIHDGRNNLGVISLNLPRIALEA
KGDEATFWKLLDERLVLARKALMTRIARLEGVKARVAPILYMEGACGVRLNADDDVSEIF
KNGRASISLGYIGIHETINALFGGEHVYDNEQLRAKGIAIVERLRQAVDQWKEETGYGFS
LYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPL
ANGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGF
TCPKCGNHDASRVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG
>gi|223713523|gb|ACDM01000075.1| GENE   107    108954  -    110609   1396    551 aa, chain - ## HITS:1  COG:ECs5216 KEGG:ns NR:ns ## COG: ECs5216 COG0366 # Protein_GI_number: 15834470 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1     551       1     551     551    1131   99.0  0
MTNLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHKLGVDAIWLTPFYVSPQ
VDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKE
SPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRA
ELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDV
FTPRGLMTVGEMSSTSLEHCQRYAALAGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVAL
KTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYI
YQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWS
NGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDL
LPNSPVLWCYRREWKGQTLLVIANLSREIQPWQPGQMRGNWQLVMHNYEEASPQPCAMNL
RPFEAVWWLQK
>gi|223713523|gb|ACDM01000075.1| GENE   108    110659  -    112077   1577    472 aa, chain - ## HITS:1  COG:ECs5217_2 KEGG:ns NR:ns ## COG: ECs5217_2 COG1263 # Protein_GI_number: 15834471 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 92     472       1     381     381     690  100.0  0
MSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANARPKEIEQLPMVKGCFTNA
GQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMKWHEQLISHFAEIFFPLLPA
LISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFLWLIGEAIFFYLPVGICWSAVK
KMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGMFSIAKVGYQAQVIPALLAGLA
LGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVRHLMTGSF
APIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQGSAVIGIII
SSRKHNEREISVPAAISAWLGVTEPAMYGINLKYRFPMLCAMIGSGLAGLLCGLNGVMAN
GIGVGGLPGILSIQPSYWQVFALAMAIAIIIPIVLTSFIYQRKYRLGTLDIV
>gi|223713523|gb|ACDM01000075.1| GENE   109    112199  -    113146    808    315 aa, chain - ## HITS:1  COG:treR KEGG:ns NR:ns ## COG: treR COG1609 # Protein_GI_number: 16132063 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     315       1     315     315     619   99.0  1e-177
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSPSRSARAMRGQ
SDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGILKRRNID
GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHRNISY
LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCAT
DTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVT
GRSEPQQIIIPATLS
>gi|223713523|gb|ACDM01000075.1| GENE   110    113525  -    116221   2822    898 aa, chain + ## HITS:1  COG:ECs5219 KEGG:ns NR:ns ## COG: ECs5219 COG0474 # Protein_GI_number: 15834473 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli O157:H7 # 1     898       1     898     898    1816  100.0  0
MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLKMAVMPEEELWKTFDTH
PEGLNQAEVESAREQHGENKLPAQQPSPWWVHLWVCYRNPFNILLTILGAISYATEDLFA
AGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLV
PGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKAATTRQPEHSNPLECDTLC
FMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQESEPNAFQQGISRVSMLLIRFMLVMA
PVVLLINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKHLDA
IQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTA
VLEGTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQ
VRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGY
IAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLS
DDELANLAQRTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDG
AVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFL
PFLPMLPLHLLIQNLLYDVSQVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFD
ILTFCLMWWVFHANTPETQTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIM
TVIVMIVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ
>gi|223713523|gb|ACDM01000075.1| GENE   111    116427  -    116813    551    128 aa, chain - ## HITS:1  COG:ECs5220 KEGG:ns NR:ns ## COG: ECs5220 COG0251 # Protein_GI_number: 15834474 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli O157:H7 # 1     128      14     141     141     228  100.0  2e-60
MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAI
VEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIE
IEAIAVRR
>gi|223713523|gb|ACDM01000075.1| GENE   112    116886  -    117347    526    153 aa, chain - ## HITS:1  COG:ECs5221 KEGG:ns NR:ns ## COG: ECs5221 COG1781 # Protein_GI_number: 15834475 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Escherichia coli O157:H7 # 1     153       1     153     153     304  100.0  5e-83
MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIK
IENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEP
VSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN
>gi|223713523|gb|ACDM01000075.1| GENE   113    117360  -    118295   1006    311 aa, chain - ## HITS:1  COG:ECs5222 KEGG:ns NR:ns ## COG: ECs5222 COG0540 # Protein_GI_number: 15834476 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Escherichia coli O157:H7 # 1     311       1     311     311     613  100.0  1e-176
MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF
ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS
GNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKF
DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE
YANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQAL
LALVLNRDLVL
>gi|223713523|gb|ACDM01000075.1| GENE   114    118714  -    119109    245    131 aa, chain - ## HITS:1  COG:ECs5225 KEGG:ns NR:ns ## COG: ECs5225 COG0251 # Protein_GI_number: 15834479 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli O157:H7 # 1     131       1     131     131     263   99.0  5e-71
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNL
HATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDF
EIKVIARIPEL
>gi|223713523|gb|ACDM01000075.1| GENE   115    119240  -    119953    274    237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7     234       4     239     242 110  35 5e-23
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDS
ADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQ
MPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPID
TDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>gi|223713523|gb|ACDM01000075.1| GENE   116    120024  -    120617    310    197 aa, chain + ## HITS:1  COG:STM1674 KEGG:ns NR:ns ## COG: STM1674 COG1309 # Protein_GI_number: 16765017 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 2     197       1     196     196     220   54.0  2e-57
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSK
VGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIH
SHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQL
CATAALAGEAIKTILKE
>gi|223713523|gb|ACDM01000075.1| GENE   117    120762  -    121214    582    150 aa, chain + ## HITS:1  COG:ECs5229 KEGG:ns NR:ns ## COG: ECs5229 COG2731 # Protein_GI_number: 15834483 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli O157:H7 # 1     150       4     153     153     305  100.0  2e-83
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARR
AEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFV
VFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>gi|223713523|gb|ACDM01000075.1| GENE   118    121337  -    122848    718    503 aa, chain + ## HITS:1  COG:no KEGG:ECO26_5422 NR:ns ## KEGG: ECO26_5422 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     503       1     503     503     971  100.0  0
MAKISDLNCYQHMASADNVKPKNEVLNTWCVGMNDFARNAEGQDSRRNILSPGAFLEFLA
KIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMNFVMNNPEGERADSSKVIIE
ISLSTTTTMGTRQGHTAIIFPQSDFLSFRYEGKSFERKDDSSLHLITNKVLACYQREANK
NMALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGIL
EEINDLKALHDTRIASGTEGNDEINNIKINLSNILIDSLDDAKVNLEKVIDSMLKTFLKL
PYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKN
SPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFM
KQPDFAKWYFYQLIKKYEGEQLYLNELGYVYGNEEKTNEIVKKLPGYVIKIFEEKMGNEL
KIRTRMMKILRNGKINIYKYMNI
>gi|223713523|gb|ACDM01000075.1| GENE   119    123017  -    124030   1000    337 aa, chain - ## HITS:1  COG:ECs5231 KEGG:ns NR:ns ## COG: ECs5231 COG0078 # Protein_GI_number: 15834485 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1     334       1     334     334     671   99.0  0
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR
CSFEVAAYDQGAHVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY
AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT
GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA
KEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME
VTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN
>gi|223713523|gb|ACDM01000075.1| GENE   120    124192  -    124608    722    138 aa, chain + ## HITS:1  COG:ECs5232 KEGG:ns NR:ns ## COG: ECs5232 COG3076 # Protein_GI_number: 15834486 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     138       1     138     138     187  100.0  5e-48
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEV
TDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNG
EDGDDEDFVDEDDDGVRH
>gi|223713523|gb|ACDM01000075.1| GENE   121    124654  -    125157    570    167 aa, chain - ## HITS:1  COG:STM4473 KEGG:ns NR:ns ## COG: STM4473 COG0454 # Protein_GI_number: 16767718 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 1     167       1     167     167     261   80.0  3e-70
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGH
AYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMG
FKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>gi|223713523|gb|ACDM01000075.1| GENE   122    125350  -    125781    262    143 aa, chain + ## HITS:1  COG:ECs5234 KEGG:ns NR:ns ## COG: ECs5234 COG4269 # Protein_GI_number: 15834488 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     143       1     143     398     246   98.0  1e-65
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEV
NGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLR
YQALMTSLNGVRFSFNCSMKGFW
>gi|223713523|gb|ACDM01000075.1| GENE   123    125806  -    126546    305    246 aa, chain + ## HITS:1  COG:ECs5234 KEGG:ns NR:ns ## COG: ECs5234 COG4269 # Protein_GI_number: 15834488 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     246     153     398     398     395   99.0  1e-110
MAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSF
GIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQF
MEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMC
ALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIM
PSLPFL
>gi|223713523|gb|ACDM01000075.1| GENE   124    126600  -    129455   3483    951 aa, chain - ## HITS:1  COG:ECs5235 KEGG:ns NR:ns ## COG: ECs5235 COG0525 # Protein_GI_number: 15834489 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1     951       1     951     951    1939  100.0  0
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMD
TMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAE
SGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLR
TAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDP
RYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINI
LTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPH
DLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDI
QDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSA
LWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHT
VYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEK
QFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQD
CGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELT
KPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQP
FPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNEN
RGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIE
GEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>gi|223713523|gb|ACDM01000075.1| GENE   125    129455  -    129898    417    147 aa, chain - ## HITS:1  COG:ECs5236 KEGG:ns NR:ns ## COG: ECs5236 COG2927 # Protein_GI_number: 15834490 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, chi subunit # Organism: Escherichia coli O157:H7 # 1     147       1     147     147     289   99.0  1e-78
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP
AESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTCFADFATAFTEVVDFVPYE
DSLKQLARERYKAYRVAGFNLNTATWK
>gi|223713523|gb|ACDM01000075.1| GENE   126    130252  -    131763   1681    503 aa, chain - ## HITS:1  COG:ECs5237 KEGG:ns NR:ns ## COG: ECs5237 COG0260 # Protein_GI_number: 15834491 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Escherichia coli O157:H7 # 1     503       1     503     503    1002  100.0  0
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL
LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR
NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAI
AAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVG
QGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAV
YGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLC
DVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRL
PLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKG
ATGRPVALLAQFLLNRAGFNGEE
>gi|223713523|gb|ACDM01000075.1| GENE   127    132051  -    133130    962    359 aa, chain + ## HITS:1  COG:ECs5238 KEGG:ns NR:ns ## COG: ECs5238 COG0795 # Protein_GI_number: 15834492 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1     359       8     366     366     619   99.0  1e-177
MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS
LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH
QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV
VVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTD
QMDMCTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYL
LFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>gi|223713523|gb|ACDM01000075.1| GENE   128    133130  -    134212   1440    360 aa, chain + ## HITS:1  COG:ECs5239 KEGG:ns NR:ns ## COG: ECs5239 COG0795 # Protein_GI_number: 15834493 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1     360       2     361     361     659  100.0  0
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSV
PKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAI
GEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAF
NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG
VVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL
RSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>gi|223713523|gb|ACDM01000075.1| GENE   129    134331  -    135833   1403    500 aa, chain - ## HITS:1  COG:yjgR KEGG:ns NR:ns ## COG: yjgR COG0433 # Protein_GI_number: 16132085 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1     500       1     500     500     944   98.0  0
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVK
GDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLL
ARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASV
GAIQRGLLSLEQQGAAHFFGEPMLDIKDLMRTDANGKGVINILSAEKLYQMPKLYAASLL
WMISELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFV
SQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGE
ALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEM
LQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAAR
QVTNQIVRGMLGSLLGGRRR
>gi|223713523|gb|ACDM01000075.1| GENE   130    135963  -    136982   1204    339 aa, chain - ## HITS:1  COG:yjgB KEGG:ns NR:ns ## COG: yjgB COG1064 # Protein_GI_number: 16132091 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1     339      15     353     353     674   98.0  0
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLV
AGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDTCISGNQINCEQGAVPTIMN
RGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGL
GHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGTDKVVNSRDPQALKALSGQFDLIINTVN
VSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFA
ARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>gi|223713523|gb|ACDM01000075.1| GENE   131    137353  -    139263    621    636 aa, chain + ## HITS:1  COG:ECs5242_2 KEGG:ns NR:ns ## COG: ECs5242_2 COG0582 # Protein_GI_number: 15834496 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 432     636       1     205     205     384   90.0  1e-106
MSQRYKLYRRTSGIYVVRISIPQRFRRYAGQCEIHTSTGTHDLHEAKQKSALLLAVWYQT
LQEYEQLDYRTLSDCAPLLAGEGMISLSNFAQSVELPVAQLIQAVMNRNLPVFWLATGQA
GFYVAALSEAELDPLDGSYVLNYGEEKGIEGVAKGYLQLTAQPAHLRNIISDGYSEASVF
KTAGSDAKGGWFFTSGWPVIKPDTLLINKVHAESLRLDWLAKTTPPVASVHPTVPLAAPA
PTIDNEYVNRKYYTKNLSWLCSEYLKHRRKGKVSESAISDIRNYFSFMIEAMGDIQLEDF
DRDFLRAYESKLRTIPANRNLVKAKYGVKTLDQLIAKAAECGDKLMTEESVRKYINGIYG
AMKWAVADGKLLKSPCENFFPSDDKDERDQDHTDIFEPHEIKAIFSLPWFEAGTVERNAQ
GRFHQYCPFNYWAPLLGLMTGARVNEIAQLLLSDVLADDGVYYLNLESDNESGKKLKNAN
ARRKIPLHSKLISLGFIDYVNALKDAGYTRLFPELKPHKTKGYGRPVSAWFNESLLAGRL
KLERNRSKSFHSFRHSVSTLLKEKGVSSELRAQLLGHVRGETETEVRYSKDLKPIHMIEV
VEKIDFSLPDIAEFNIPDGLDAVRDALRRKRGKQTG
>gi|223713523|gb|ACDM01000075.1| GENE   132    139396  -    139728    155    110 aa, chain - ## HITS:1  COG:no KEGG:UTI89_C0287 NR:ns ## KEGG: UTI89_C0287 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     110       1     110     110     212   92.0  3e-54
MRTVEILQYTLRKGSGAAFHAIMQEISVPLHQRHGIDVVSFGNSLHDPDCYYLIRAFVSP
KSMTTVLDAFYASDDWRSGPREDIIGNIEASIKTVINLPSESVEGLRVQS
>gi|223713523|gb|ACDM01000075.1| GENE   133    141393  -    141953    405    186 aa, chain + ## HITS:1  COG:ECs5249 KEGG:ns NR:ns ## COG: ECs5249 COG1961 # Protein_GI_number: 15834503 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli O157:H7 # 1     186       3     188     191     277   83.0  1e-74
MATFGYGRVSTSQQDTENQRLELGQAGWQIDYWFADVVSGKVPAMQRKAFSEMLNKIRDG
ETLVVAKLDRLGRDAIDVLQTVRALADRNIKVLVHQLGNTDLTSAAGKLLLSMLAAVAEM
ERDLLIERTQAGLSRAKAEGKKLGRPPKIASEARREILEKKNSGLSISALARQYGVSRAT
VAAITD
>gi|223713523|gb|ACDM01000075.1| GENE   134    141967  -    142812    150    281 aa, chain + ## HITS:1  COG:no KEGG:GAU_0079 NR:ns ## KEGG: GAU_0079 # Name: not_defined # Def: hypothetical protein # Organism: G.aurantiaca # Pathway: not_defined # 1     280       1     277     277     310   54.0  3e-83
MAYTATVIPVMIASPGDVAEERQVIREMIHEWNDINSARSKVMLTPIGWETHTSPELGVR
PQELINQRLLVDCDLLIGVFWTRLGSPTGNEASGTVEEIHRHLNAGKPAMIYFSSKPVAP
ESLDREQYESLKLFKTECMQKGLIESFNDLSDFKEKVRRQLSIIISSSPYLSSLISTINN
SPDANTSQSLPESNLSADALSLLKLACVDDSGTIYVIRHLGGTDIQAGNQSFGGSSAREV
ARWEGALNELLSFDFVIERGAKGQMYYVTHKGWTFLESLNE
>gi|223713523|gb|ACDM01000075.1| GENE   135    142873  -    143367    278    164 aa, chain - ## HITS:1  COG:no KEGG:Pecwa_3422 NR:ns ## KEGG: Pecwa_3422 # Name: not_defined # Def: hypothetical protein # Organism: P.wasabiae # Pathway: not_defined # 1     164       1     165     165     248   74.0  7e-65
MTGADFLLPIAAGAAISWASYSVVAHAVSKQHISTLRATVWGALGTLSLVLGVCAFSAVG
AEHQTARKDIVCADDNPECYAKTHHNPVRECKKVMDEKAKFRHVWQESEAPVFNTYLWHD
ENAKIIQAFGQQAKVVNSLGMLAPLQYFCVFNAKTGEVIAASFE
>gi|223713523|gb|ACDM01000075.1| GENE   136    143608  -    144072    235    154 aa, chain + ## HITS:1  COG:ECs5252 KEGG:ns NR:ns ## COG: ECs5252 COG1396 # Protein_GI_number: 15834506 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     154       1     154     154     271   90.0  5e-73
MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL
SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA
LEYLRSMETAKWRRPNPSGNWGIVSAVRWDKLRK
>gi|223713523|gb|ACDM01000075.1| GENE   137    145350  -    145934    193    194 aa, chain + ## HITS:1  COG:no KEGG:ECS88_4853 NR:ns ## KEGG: ECS88_4853 # Name: not_defined # Def: conserved hypothetical protein, putative phage-related protein # Organism: E.coli_S88 # Pathway: not_defined # 1     194      81     274     274     388   99.0  1e-107
MLTAIRDYIYGEAWYLVYDLIEFIIERTNSYINLSKHLNSIFKKHGVGYTIINGCITPIS
NDNEIESVQNAVDNGTDSSRSHFERALQLMTDREQPDYRNSIKESISAIESLCRKITGND
KGTLGACLKAIEEKGYIHSAMKGAFSQLYGYTSDQGGIRHALTEEDVNPTLAEAKFMLVT
CSAFSNYLLSKISD
>gi|223713523|gb|ACDM01000075.1| GENE   138    145983  -    146555     75    190 aa, chain - ## HITS:1  COG:no KEGG:ECS88_4854 NR:ns ## KEGG: ECS88_4854 # Name: not_defined # Def: putative lysogenic conversion protein from bacteriophage P2-EC53 # Organism: E.coli_S88 # Pathway: not_defined # 1     190      19     208     208     360  100.0  1e-98
MVDASAQPHIVVTLEPNPWAAFYFDINIANTGNAPAYNVEVVFDPPLVNAEHREKSEIPF
SKVSVLKNGQSLTSNLCKYEQIKDQIYNINISWASKPKSNDRETNEYVYDMATFEGISYL
GARSPLTQIAEQIKGIREDWKPIAQGAKKVKADVYTSSDRNEERTYLQEQHDLAIKRRDE
KREKRLESGE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:21:37 2011
 Seq name: gi|223713522|gb|ACDM01000076.1| Escherichia sp. 4_1_40B cont1.76, whole genome shotgun sequence 
 Length of sequence - 9538 bp
 Number of predicted genes - 10, with homology - 10
 Number of transcription units - 2, operones - 2 average op.length -  5.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1  11/0.000   +    CDS        211 -       624    252  ## COG2801 Transposase and inactivated derivatives
     2     1 Op  2     .       +    CDS        657 -       863     77  ## COG2801 Transposase and inactivated derivatives
     3     1 Op  3     .       +    CDS        946 -      1203    147  ## ECS88_4859 conserved hypothetical protein; KpLE2 phage-like element
                               +    Term      1397 -      1426    2.5 
     4     2 Op  1  35/0.000   -    CDS       1761 -      2528    228  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
     5     2 Op  2  20/0.000   -    CDS       2529 -      3485    849  ## COG0609 ABC-type Fe3+-siderophore transport system, permease component
     6     2 Op  3   3/0.000   -    CDS       3482 -      4459    738  ## COG0609 ABC-type Fe3+-siderophore transport system, permease component
     7     2 Op  4     .       -    CDS       4477 -      5379    865  ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component
                               -    Term      5387 -      5414    1.5 
     8     2 Op  5   2/0.000   -    CDS       5424 -      7748   2284  ## COG4772 Outer membrane receptor for Fe3+-dicitrate
     9     2 Op  6   6/0.000   -    CDS       7835 -      8788    659  ## COG3712 Fe2+-dicitrate sensor, membrane component
    10     2 Op  7     .       -    CDS       8785 -      9306    414  ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
                               -    Prom      9334 -      9393    5.9 
Predicted protein(s)
>gi|223713522|gb|ACDM01000076.1| GENE     1       211  -       624    252    137 aa, chain + ## HITS:1  COG:b4285 KEGG:ns NR:ns ## COG: b4285 COG2801 # Protein_GI_number: 16132106 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     137      62     198     198     277   98.0  4e-75
MGHWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNHLERQFAVTEPNQVWCGDVTYIW
TGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQAIKAVII
RAGSSGSYCGDTGSGRV
>gi|223713522|gb|ACDM01000076.1| GENE     2       657  -       863     77     68 aa, chain + ## HITS:1  COG:VC0257 KEGG:ns NR:ns ## COG: VC0257 COG2801 # Protein_GI_number: 15640286 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 1      68     223     290     290      98   66.0  2e-21
MERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKN
SNAEASFS
>gi|223713522|gb|ACDM01000076.1| GENE     3       946  -      1203    147     85 aa, chain + ## HITS:1  COG:no KEGG:ECS88_4859 NR:ns ## KEGG: ECS88_4859 # Name: yjhV # Def: conserved hypothetical protein; KpLE2 phage-like element # Organism: E.coli_S88 # Pathway: not_defined # 1      85      53     137     137     182  100.0  3e-45
MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFPLAKKGEGRARLPSLYA
SFGKLGETPTHKDIIDNNRSINWPV
>gi|223713522|gb|ACDM01000076.1| GENE     4      1761  -      2528    228    255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3     225       2     226     245 92  25 1e-18
MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVF
LGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVN
VAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRL
MGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAE
IHPEPVSGRPMCLMR
>gi|223713522|gb|ACDM01000076.1| GENE     5      2529  -      3485    849    318 aa, chain - ## HITS:1  COG:fecD KEGG:ns NR:ns ## COG: fecD COG0609 # Protein_GI_number: 16132109 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1     318       1     318     318     493   99.0  1e-139
MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALF
VGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGM
AGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDW
SFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGV
AACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGV
LTAIIGAPWFVWLLVRMR
>gi|223713522|gb|ACDM01000076.1| GENE     6      3482  -      4459    738    325 aa, chain - ## HITS:1  COG:fecC KEGG:ns NR:ns ## COG: fecC COG0609 # Protein_GI_number: 16132110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1     325       8     332     332     496   99.0  1e-140
MLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALLPGHTPTLPEALVQNLRLPRSLVA
VLIGASLALAGTLLQTLTHNPMASPSLLGINSGAALAMALTSALSPTPIAGYSLSFIAAC
GGGVSWLLVMTAGGGFRHTHDRNKLILAGIALSAFCMGLTRITLLLAEDHAYGIFYWLAG
GVSHARWQDVWQLLPVVVTAVPVVLLLANQLNLLNLSDSTAHTLGVNLTRLRLVINMLVL
LLVGACVSVAGPVAFIGLLVPHLARFWAGFDQRNVLPVSMLLGATLMLLADVLARALAFP
GDLPAGAVLALIGSPCFVWLVRRRG
>gi|223713522|gb|ACDM01000076.1| GENE     7      4477  -      5379    865    300 aa, chain - ## HITS:1  COG:fecB KEGG:ns NR:ns ## COG: fecB COG4594 # Protein_GI_number: 16132111 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     300       3     302     302     549   99.0  1e-156
MLAFIRFVFAGLLLVISHAFAATVQDEHGTFTLEKTPQRIVVLELSFADALAAVDVSPIG
IADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDLIIADSSRHAGVYIALQQI
APVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQHKERMAQWASQLPKGTRVAFG
TSREQQFNLHTQETWTGSVLASLGLNVPAAMAGASMPSIGLEQLLAVNPAWLLVAHYREE
SIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRGIFAAERIAADTVKIFHHQPLTVVK
>gi|223713522|gb|ACDM01000076.1| GENE     8      5424  -      7748   2284    774 aa, chain - ## HITS:1  COG:fecA KEGG:ns NR:ns ## COG: fecA COG4772 # Protein_GI_number: 16132112 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for Fe3+-dicitrate # Organism: Escherichia coli K12 # 1     774       1     774     774    1539   99.0  0
MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLDKALNQYAAHSGFTLSV
DASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGD
WLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNF
GIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQS
VGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGT
RGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQST
RPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGI
EPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAH
AWYLDDKIDIGNWTITPGMRFEHIASYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNL
YANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYD
SNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNL
VPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGAR
VAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
>gi|223713522|gb|ACDM01000076.1| GENE     9      7835  -      8788    659    317 aa, chain - ## HITS:1  COG:fecR KEGG:ns NR:ns ## COG: fecR COG3712 # Protein_GI_number: 16132113 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Escherichia coli K12 # 1     317       1     317     317     567  100.0  1e-161
MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQL
GGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSR
QQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTAL
GTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDEST
SWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTL
PVKIQSITRYWINISPL
>gi|223713522|gb|ACDM01000076.1| GENE    10      8785  -      9306    414    173 aa, chain - ## HITS:1  COG:fecI KEGG:ns NR:ns ## COG: fecI COG1595 # Protein_GI_number: 16132114 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Escherichia coli K12 # 1     173       1     173     173     326  100.0  1e-89
MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD
PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG
LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:21:40 2011
 Seq name: gi|223713521|gb|ACDM01000077.1| Escherichia sp. 4_1_40B cont1.77, whole genome shotgun sequence 
 Length of sequence - 3388 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 2, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       699 -       758    6.3 
     1     1 Tu  1     .       +    CDS        839 -      1096    135  ## ECB_04162 hypothetical protein
                               +    Prom      1674 -      1733    4.9 
     2     2 Tu  1     .       +    CDS       1829 -      3187   1531  ## COG4222 Uncharacterized protein conserved in bacteria
Predicted protein(s)
>gi|223713521|gb|ACDM01000077.1| GENE     1       839  -      1096    135     85 aa, chain + ## HITS:1  COG:no KEGG:ECB_04162 NR:ns ## KEGG: ECB_04162 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      85      13      97      97     135  100.0  4e-31
MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCEREIINNKNIIKKLMFFLS
DVNHTKKDVVQSALNIIIDITSGDI
>gi|223713521|gb|ACDM01000077.1| GENE     2      1829  -      3187   1531    452 aa, chain + ## HITS:1  COG:alr4238_3 KEGG:ns NR:ns ## COG: alr4238_3 COG4222 # Protein_GI_number: 17231730 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 157     329       3     183     205      61   29.0  3e-09
MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAFASAFPNGLPVGIGSGL
LFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAPLLMTIRVQNGKAEAIDPR
PLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRGLDTEGITPDGKGGYWLCDEY
GPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKWRQANRGFEGLTRMPDGRIIVAV
QSTLDIDTKSKKKALFTRLVSFDPASGKTAMYGYPIDSAAYSKNSDAKIGDIVALDNQHI
LLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKPGEYPEFDDEKTLSQRGITLAQKTQVV
DLRSLGWQQEKAEGLALIDSKTLAVANDNDFGVKVAMQHPVEGKTFKDYRVNAEGKLTLD
DKQVETTLRVKPLEKPESDSELWIVTLPEALK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:21:43 2011
 Seq name: gi|223713520|gb|ACDM01000078.1| Escherichia sp. 4_1_40B cont1.78, whole genome shotgun sequence 
 Length of sequence - 3047 bp
 Number of predicted genes - 4, with homology - 4
 Number of transcription units - 2, operones - 1 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   -    CDS         38 -      1423    578  ## COG3436 Transposase and inactivated derivatives
     2     1 Op  2   6/0.000   -    CDS       1473 -      1820    278  ## COG3436 Transposase and inactivated derivatives
     3     1 Op  3     .       -    CDS       1817 -      2206    138  ## COG2963 Transposase and inactivated derivatives
                               -    Prom      2287 -      2346    2.2 
     4     2 Tu  1     .       -    CDS       2552 -      2986    194  ## ECUMN_4871 hypothetical protein
Predicted protein(s)
>gi|223713520|gb|ACDM01000078.1| GENE     1        38  -      1423    578    461 aa, chain - ## HITS:1  COG:ECs0330 KEGG:ns NR:ns ## COG: ECs0330 COG3436 # Protein_GI_number: 15829584 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     461       1     512     512     894   89.0  0
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKAS
RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP
GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH
LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
>gi|223713520|gb|ACDM01000078.1| GENE     2      1473  -      1820    278    115 aa, chain - ## HITS:1  COG:Z2127 KEGG:ns NR:ns ## COG: Z2127 COG3436 # Protein_GI_number: 15801566 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1     115      72     186     186     223   98.0  6e-59
MIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIFIFRGRSGSQVKLLWST
GDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDWRQPKRLLTSLTML
>gi|223713520|gb|ACDM01000078.1| GENE     3      1817  -      2206    138    129 aa, chain - ## HITS:1  COG:ECs0328 KEGG:ns NR:ns ## COG: ECs0328 COG2963 # Protein_GI_number: 15829582 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     129       5     133     133     235   96.0  2e-62
MSDMQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGINANLLFKWRQQWR
EGKLLLPSSESPQLLPVTLDATAEQPESLAEAPETLSISCEVTFRHGTLRFNGNVSEKLL
TLLIQELKR
>gi|223713520|gb|ACDM01000078.1| GENE     4      2552  -      2986    194    144 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_4871 NR:ns ## KEGG: ECUMN_4871 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     144      30     173     173     297  100.0  7e-80
MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQRGNDGQPPWFEHDQMTV
AEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVMCDEDYEGEKCCPRCGTGV
YSRAWGRQEVPSEDARADNPLQRL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:21:57 2011
 Seq name: gi|223713519|gb|ACDM01000079.1| Escherichia sp. 4_1_40B cont1.79, whole genome shotgun sequence 
 Length of sequence - 37505 bp
 Number of predicted genes - 41, with homology - 41
 Number of transcription units - 22, operones - 8 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         22 -       591    486  ## ECS88_4881 hypothetical protein
                               +    Prom       698 -       757    4.1 
     2     2 Tu  1     .       +    CDS        791 -       991     97  ## ECO103_3574 hypothetical protein
                               +    Prom      1806 -      1865    4.7 
     3     3 Op  1     .       +    CDS       1966 -      2334    205  ## ECED1_5187 antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage
     4     3 Op  2     .       +    CDS       2424 -      2798    198  ## ECED1_3493 toxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage
     5     3 Op  3     .       +    CDS       2810 -      3283    207  ## ECED1_4873 hypothetical protein
     6     3 Op  4     .       +    CDS       3295 -      3492    150  ## EC55989_4897 hypothetical protein
                               +    Term      3523 -      3555    3.0 
     7     4 Tu  1     .       +    CDS       3577 -      3729     62  ## c5146 hypothetical protein
                               +    Term      3862 -      3902   -0.9 
     8     5 Tu  1     .       -    CDS       4202 -      4387    148  ## ECO26_5503 hypothetical protein
                               +    Prom      4655 -      4714    5.7 
     9     6 Tu  1     .       +    CDS       4766 -      5416    358  ## COG3183 Predicted restriction endonuclease
    10     7 Tu  1   2/0.250   -    CDS       5424 -      6404    252  ## COG2801 Transposase and inactivated derivatives
                               -    Term      6423 -      6464    2.5 
    11     8 Op  1     .       -    CDS       6469 -      7575    592  ## COG3055 Uncharacterized protein conserved in bacteria
    12     8 Op  2     .       -    CDS       7595 -      8311    428  ## G2583_5112 hypothetical protein
                               -    Prom      8439 -      8498    5.5 
                               -    Term      8968 -      9007   -0.1 
    13     9 Tu  1     .       -    CDS       9110 -      9322    125  ## ECS88_4929 hypothetical protein
                               -    Prom      9442 -      9501    4.9 
                               +    Prom      9478 -      9537    7.3 
    14    10 Op  1  12/0.000   +    CDS       9765 -     10367     64  ## COG0582 Integrase
                               +    Prom     10765 -     10824    1.9 
    15    10 Op  2   3/0.250   +    CDS      10844 -     11440    368  ## COG0582 Integrase
    16    11 Op  1   4/0.000   +    CDS      11921 -     12475    362  ## COG3539 P pilus assembly protein, pilin FimA
    17    11 Op  2   7/0.000   +    CDS      12540 -     13079    300  ## COG3539 P pilus assembly protein, pilin FimA
    18    11 Op  3  10/0.000   +    CDS      13116 -     13841    442  ## COG3121 P pilus assembly protein, chaperone PapD
    19    11 Op  4   6/0.000   +    CDS      13908 -     16544   1427  ## COG3188 P pilus assembly protein, porin PapC
    20    11 Op  5   4/0.000   +    CDS      16554 -     17084    170  ## COG3539 P pilus assembly protein, pilin FimA
    21    11 Op  6     .       +    CDS      17097 -     17600    277  ## COG3539 P pilus assembly protein, pilin FimA
    22    11 Op  7     .       +    CDS      17620 -     18522    488  ## EcE24377A_4917 protein FimH
                               +    Term     18662 -     18701    2.5 
                               -    Term     18652 -     18684    6.3 
    23    12 Tu  1     .       -    CDS      18695 -     20038   1653  ## COG2610 H+/gluconate symporter and related permeases
                               -    Prom     20063 -     20122    2.4 
                               +    Prom     20201 -     20260    3.3 
    24    13 Op  1   7/0.000   +    CDS      20378 -     21562   1526  ## COG1312 D-mannonate dehydratase
                               +    Term     21569 -     21605    8.6 
    25    13 Op  2     .       +    CDS      21643 -     23103   1883  ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases
                               +    Term     23128 -     23171    8.6 
    26    14 Tu  1     .       -    CDS      23125 -     23319     68  ## ECBD_3711 hypothetical protein
                               -    Prom     23374 -     23433    2.6 
                               +    Prom     23161 -     23220    5.0 
    27    15 Tu  1     .       +    CDS      23318 -     24091    989  ## COG2186 Transcriptional regulators
                               +    Term     24105 -     24142    4.1 
                               -    Term     24107 -     24155    0.3 
    28    16 Tu  1     .       -    CDS      24232 -     25062    392  ## ECO26_5521 hypothetical protein
                               -    Prom     25200 -     25259    6.9 
                               +    Prom     25684 -     25743    2.2 
    29    17 Tu  1     .       +    CDS      25876 -     26127    200  ## ECO111_5182 DNA replication/recombination/repair protein
    30    18 Op  1     .       -    CDS      26120 -     27031    830  ## COG0583 Transcriptional regulator
    31    18 Op  2     .       -    CDS      27096 -     28268   1202  ## EcE24377A_4927 isoaspartyl dipeptidase (EC:3.4.19.5)
    32    18 Op  3   3/0.250   -    CDS      28281 -     28742    573  ## COG0700 Uncharacterized membrane protein
    33    18 Op  4     .       -    CDS      28739 -     29434    662  ## COG3314 Uncharacterized protein conserved in bacteria
                               -    Prom     29643 -     29702    5.5 
                               +    Prom     29511 -     29570    4.8 
    34    19 Tu  1     .       +    CDS      29672 -     30226    466  ## COG1859 RNA:NAD 2'-phosphotransferase
                               +    Term     30302 -     30351    0.1 
                               -    Term     30119 -     30167    1.8 
    35    20 Tu  1   2/0.250   -    CDS      30239 -     31360    834  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     31410 -     31469    1.9 
    36    21 Op  1     .       -    CDS      31485 -     32345    529  ## COG3204 Uncharacterized protein conserved in bacteria
    37    21 Op  2     .       -    CDS      32410 -     32667    125  ## SDY_4595 hypothetical protein
    38    21 Op  3   4/0.000   -    CDS      32664 -     33431    437  ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)
    39    21 Op  4   1/0.500   -    CDS      33441 -     34592   1358  ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
                               -    Prom     34630 -     34689    1.8 
    40    22 Op  1   4/0.000   -    CDS      34708 -     35955   1120  ## COG2733 Predicted membrane protein
    41    22 Op  2     .       -    CDS      36029 -     37288   1162  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     37415 -     37474    3.6 
Predicted protein(s)
>gi|223713519|gb|ACDM01000079.1| GENE     1        22  -       591    486    189 aa, chain - ## HITS:1  COG:no KEGG:ECS88_4881 NR:ns ## KEGG: ECS88_4881 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1     189      13     201     201     387  100.0  1e-106
MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRLPDVPAATDAAVISRFINALKARID
AYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVNRDTWCRAGDYRAPESLAG
MIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQQVLERADYLAKEHTKAHCTG
ERNFGCSRS
>gi|223713519|gb|ACDM01000079.1| GENE     2       791  -       991     97     66 aa, chain + ## HITS:1  COG:no KEGG:ECO103_3574 NR:ns ## KEGG: ECO103_3574 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      63       1      63      64      82   84.0  7e-15
MVIRKKKCRDCGNAITHNTVCCPYCGSVDPFGYYRNTDRIVTILLALIIVVLLTTVSVSV
CILCSW
>gi|223713519|gb|ACDM01000079.1| GENE     3      1966  -      2334    205    122 aa, chain + ## HITS:1  COG:no KEGG:ECED1_5187 NR:ns ## KEGG: ECED1_5187 # Name: yeeU # Def: antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_ED1a # Pathway: not_defined # 1     122       1     122     122     249  100.0  2e-65
MSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAY
HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPET
KK
>gi|223713519|gb|ACDM01000079.1| GENE     4      2424  -      2798    198    124 aa, chain + ## HITS:1  COG:no KEGG:ECED1_3493 NR:ns ## KEGG: ECED1_3493 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_ED1a # Pathway: not_defined # 1     124       1     124     124     251  100.0  6e-66
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLC
DAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH
PEKR
>gi|223713519|gb|ACDM01000079.1| GENE     5      2810  -      3283    207    157 aa, chain + ## HITS:1  COG:no KEGG:ECED1_4873 NR:ns ## KEGG: ECED1_4873 # Name: yeeW # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1     157       6     162     162     320  100.0  7e-87
MLEADRINVQALNMGRIVVDVDGVNLTELINKVAENGYSLRVVEESDQQSTCTLPPFATL
AGIRCSTAHITEKDNAWLYSLSHQTSDVGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGL
SKTFRRLVITLTRRYGVSLIHLDASAECLPGLPTFNW
>gi|223713519|gb|ACDM01000079.1| GENE     6      3295  -      3492    150     65 aa, chain + ## HITS:1  COG:no KEGG:EC55989_4897 NR:ns ## KEGG: EC55989_4897 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      65     125     189     189     125   93.0  7e-28
MKSLTTETALDILIAWLQDNIDCESGIIFDNNEDKTDSAALLPCIEQAREDIRTLRQLQL
QHQNR
>gi|223713519|gb|ACDM01000079.1| GENE     7      3577  -      3729     62     50 aa, chain + ## HITS:1  COG:no KEGG:c5146 NR:ns ## KEGG: c5146 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1      50       1      49     174      73   82.0  2e-12
MSDITAYRPEVVNENTDVICSTSIRRILAVRKSSLLQIDTIIRHQVSDIS
>gi|223713519|gb|ACDM01000079.1| GENE     8      4202  -      4387    148     61 aa, chain - ## HITS:1  COG:no KEGG:ECO26_5503 NR:ns ## KEGG: ECO26_5503 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1      61      12      72      72     108  100.0  6e-23
MSNKNYESHRKAIVSKGIPPALLNRLTNSDVQVINTFLTRVSKLELSQQEKDWIIKIISM
V
>gi|223713519|gb|ACDM01000079.1| GENE     9      4766  -      5416    358    216 aa, chain + ## HITS:1  COG:VCA0309 KEGG:ns NR:ns ## COG: VCA0309 COG3183 # Protein_GI_number: 15601074 # Func_class: V Defense mechanisms # Function: Predicted restriction endonuclease # Organism: Vibrio cholerae # 97     210     117     230     234     127   47.0  1e-29
MNKLPDHLPRRYIIEAIHLWDAGETHQFQPARLYEIEYHGRRYPSKAIAGIAATLMTGTQ
FTPADFTGGIKSKCVKLLIEQGFHIHLDKAAAAPIADVLFPDELPSQETYLEGAAIKVTV
NRYERDKKARDKAVEHHGCQCNVCGVDLVKIYGDIAEGFIHVHHLVPLSAIKEDYQLDPV
NDLLPVYPNCHAMLHRRKPPFTPGQLKALMDANKSN
>gi|223713519|gb|ACDM01000079.1| GENE    10      5424  -      6404    252    326 aa, chain - ## HITS:1  COG:yjhS KEGG:ns NR:ns ## COG: yjhS COG2801 # Protein_GI_number: 16132130 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     326       1     326     326     668   97.0  0
MNAIISPDYYYILTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPSCHFN
DIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGVLIVPCCR
GGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPHNKFLGVCWMQG
EFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHAYE
VIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSS
HFSTAARRGIISDKFVEAILQFWRER
>gi|223713519|gb|ACDM01000079.1| GENE    11      6469  -      7575    592    368 aa, chain - ## HITS:1  COG:yjhT KEGG:ns NR:ns ## COG: yjhT COG3055 # Protein_GI_number: 16132131 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     368      37     404     404     692   97.0  0
MNKTITALTIIMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAK
DKRWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL
MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAYYFDKKA
EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE
LDFTGDNLKWNKLDPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL
KKSYSADIHLWYNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVMDSVLISVK
DNKVTVQN
>gi|223713519|gb|ACDM01000079.1| GENE    12      7595  -      8311    428    238 aa, chain - ## HITS:1  COG:no KEGG:G2583_5112 NR:ns ## KEGG: G2583_5112 # Name: nanC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     238       4     241     241     451   99.0  1e-125
MKKAKILSSVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESN
TWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDAT
KDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDY
RYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL
>gi|223713519|gb|ACDM01000079.1| GENE    13      9110  -      9322    125     70 aa, chain - ## HITS:1  COG:no KEGG:ECS88_4929 NR:ns ## KEGG: ECS88_4929 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      70      62     131     131     140   98.0  2e-32
MLILRSLAIIPAWFVSLGHEIVTFPFILEIWGNAGDAFSSTSVGNYGFGHYDLNLPQSQL
FAGRYGKQTK
>gi|223713519|gb|ACDM01000079.1| GENE    14      9765  -     10367     64    200 aa, chain + ## HITS:1  COG:ECs5271 KEGG:ns NR:ns ## COG: ECs5271 COG0582 # Protein_GI_number: 15834525 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1     200       1     200     200     402  100.0  1e-112
MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDID
LKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQ
FYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASN
AGRFYGIWDRARGRQRHAVL
>gi|223713519|gb|ACDM01000079.1| GENE    15     10844  -     11440    368    198 aa, chain + ## HITS:1  COG:fimE KEGG:ns NR:ns ## COG: fimE COG0582 # Protein_GI_number: 16132134 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 1     198       1     198     198     367  100.0  1e-102
MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRI
NIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRII
RDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFA
GLWERNNLINEKLKREEV
>gi|223713519|gb|ACDM01000079.1| GENE    16     11921  -     12475    362    184 aa, chain + ## HITS:1  COG:ECs5273 KEGG:ns NR:ns ## COG: ECs5273 COG3539 # Protein_GI_number: 15834527 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1     184       1     182     182     221   91.0  6e-58
MKIKTLAIVVLSALSLSSTAALAETTPTTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLG
QVRTASLKQTGATSSAVGFNIQLNDCDTSVATKAAVAFLGTAIDSAHPKVLALQSSAAGS
ATNVGVQILDRTGNELTLDGATFSAQTTLNNGTNTIPFQARYYAIGEATPGAANADATFK
VQYQ
>gi|223713519|gb|ACDM01000079.1| GENE    17     12540  -     13079    300    179 aa, chain + ## HITS:1  COG:fimI KEGG:ns NR:ns ## COG: fimI COG3539 # Protein_GI_number: 16132136 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     179      37     215     215     370  100.0  1e-102
MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQIS
SNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSVGEGPGIATNIG
VALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ
>gi|223713519|gb|ACDM01000079.1| GENE    18     13116  -     13841    442    241 aa, chain + ## HITS:1  COG:ECs5275 KEGG:ns NR:ns ## COG: ECs5275 COG3121 # Protein_GI_number: 15834529 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli O157:H7 # 1     241       1     241     241     456   99.0  1e-128
MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQVQLAVTN
NDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFW
MNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLIN
PTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
E
>gi|223713519|gb|ACDM01000079.1| GENE    19     13908  -     16544   1427    878 aa, chain + ## HITS:1  COG:ECs5276 KEGG:ns NR:ns ## COG: ECs5276 COG3188 # Protein_GI_number: 15834530 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 1     878       1     878     878    1719   98.0  0
MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA
VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMELN
TASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY
RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT
STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI
PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLVGVYGTLLEDNNLSYSVQTGYAGGGD
GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
>gi|223713519|gb|ACDM01000079.1| GENE    20     16554  -     17084    170    176 aa, chain + ## HITS:1  COG:ECs5277 KEGG:ns NR:ns ## COG: ECs5277 COG3539 # Protein_GI_number: 15834531 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     318   98.0  4e-87
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN
NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAVAGLGIQLLNE
QQNQIPINAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
>gi|223713519|gb|ACDM01000079.1| GENE    21     17097  -     17600    277    167 aa, chain + ## HITS:1  COG:fimG KEGG:ns NR:ns ## COG: fimG COG3539 # Protein_GI_number: 16132140 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     167       1     167     167     254   99.0  4e-68
MKWCKRGYVLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMS
AGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLN
SGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
>gi|223713519|gb|ACDM01000079.1| GENE    22     17620  -     18522    488    300 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_4917 NR:ns ## KEGG: EcE24377A_4917 # Name: fimH # Def: protein FimH # Organism: E.coli_E24377A # Pathway: not_defined # 1     300       1     300     300     529  100.0  1e-149
MKRVINLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPAVNVGQNLVVDLS
TQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRT
DKPWPVALYLTPVSSAGGVVIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTG
GCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQ
GVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIAVTFVYQ
>gi|223713519|gb|ACDM01000079.1| GENE    23     18695  -     20038   1653    447 aa, chain - ## HITS:1  COG:ECs5280 KEGG:ns NR:ns ## COG: ECs5280 COG2610 # Protein_GI_number: 15834534 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli O157:H7 # 1     447       1     447     447     704  100.0  0
MHVLNILWVVFGIGLMLVLNLKFKINSMVALLVAALSVGMLAGMDLMSLLHTMKAGFGNT
LGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLSVIIIGLIFGLAMFYEVA
FIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQPGPVALVNAYGADMGMVYIY
GVLVTIPSVICAGLILPKFLGNLERPTPSFLKADQPVDMNNLPSFGVSILVPLIPAIIMI
STTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVK
SIAMVILIIGAGGVLKQTIIDTGIGDTIGMLMSHGNISPYIMAWLITVLIRLATGQGVVS
AMTAAGIISAAILDPATGQLVGVNPALLVLATAAGSNTLTHINDASFWLFKGYFDLSVKD
TLKTWGLLELVNSVVGLIIVLIISMVA
>gi|223713519|gb|ACDM01000079.1| GENE    24     20378  -     21562   1526    394 aa, chain + ## HITS:1  COG:uxuA KEGG:ns NR:ns ## COG: uxuA COG1312 # Protein_GI_number: 16132143 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Escherichia coli K12 # 1     394       1     394     394     815   99.0  0
MEQTWRWYGPNDPVSLADVRQAGATGVVTALHHIPNGEVWSVEEILKRKAIVEDAGLVWS
VVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCYNFMPVLDWTRTDLEYVLP
DGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAERFATMSDEDKARLTRNIIAG
LPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKAIIPVAEEVGVRMAVHPDDPPRP
ILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLR
STMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEEHRRKAEGKEDLIPMRPDHGHQMLDDL
KKKTNPGYSAIGRLKGLAEVRGVELAIQRAFFSR
>gi|223713519|gb|ACDM01000079.1| GENE    25     21643  -     23103   1883    486 aa, chain + ## HITS:1  COG:ECs5282 KEGG:ns NR:ns ## COG: ECs5282 COG0246 # Protein_GI_number: 15834536 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1     486       1     486     486    1016  100.0  0
MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNL
MPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQT
AIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKSAIGYIVEALRLRREKGLKAF
TVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI
ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHS
FLAYLGYLGGYETIADTMTNPDYRKAAFALMMQEQAPTLSMPEGTDLNAYATLLIERFSN
PSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLALGVAGWMRYTQGVDEQGNAI
DVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR
ECVAAL
>gi|223713519|gb|ACDM01000079.1| GENE    26     23125  -     23319     68     64 aa, chain - ## HITS:1  COG:no KEGG:ECBD_3711 NR:ns ## KEGG: ECBD_3711 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      64       1      64      64     119   98.0  3e-26
MVLCPLGAVNQIFAGCGVNALSGLQRAILRPLLISNYTISTGSWHVQVGKKTKTGQPNIS
LIDQ
>gi|223713519|gb|ACDM01000079.1| GENE    27     23318  -     24091    989    257 aa, chain + ## HITS:1  COG:ECs5283 KEGG:ns NR:ns ## COG: ECs5283 COG2186 # Protein_GI_number: 15834537 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     256       1     256     257     496   99.0  1e-140
MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIK
GLVEVRRGAGIYVLDSSGSHNTDSSDANVCNDAGPFELLQARQLLESNIAEFAALQATRE
DIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPM
WIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDI
YFDGYLFDSWPLDKVDV
>gi|223713519|gb|ACDM01000079.1| GENE    28     24232  -     25062    392    276 aa, chain - ## HITS:1  COG:no KEGG:ECO26_5521 NR:ns ## KEGG: ECO26_5521 # Name: yjiC # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     276       1     276     276     564   98.0  1e-159
MSMPLSNTLQSQIITDNHFLHHPKVDSELTRKYERARLDTENIYLLPLARGNNHNYDGKS
VVEIRKIDISEESWPFNYVTEACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAA
TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPVSQAKRWTN
EQPRIDIYIDQIITVSGVANSSGFALAALLNANIEMGNDPIIGIEAYPGTAEIHAKMGYK
VIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK
>gi|223713519|gb|ACDM01000079.1| GENE    29     25876  -     26127    200     83 aa, chain + ## HITS:1  COG:no KEGG:ECO111_5182 NR:ns ## KEGG: ECO111_5182 # Name: iraD # Def: DNA replication/recombination/repair protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      83      48     130     130     166  100.0  2e-40
MPEWQVHNQSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYSHTLAISLEIMLYHDD
EPLTFDLVWDNGGWRSATLENVS
>gi|223713519|gb|ACDM01000079.1| GENE    30     26120  -     27031    830    303 aa, chain - ## HITS:1  COG:yjiE KEGG:ns NR:ns ## COG: yjiE COG0583 # Protein_GI_number: 16132148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     303       1     303     303     603   99.0  1e-172
MDDCGAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNR
QVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSII
SQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRLFESQLFPVCAS
DEHGEALFNLAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALD
GCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELEI
VLS
>gi|223713519|gb|ACDM01000079.1| GENE    31     27096  -     28268   1202    390 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_4927 NR:ns ## KEGG: EcE24377A_4927 # Name: iadA # Def: isoaspartyl dipeptidase (EC:3.4.19.5) # Organism: E.coli_E24377A # Pathway: not_defined # 1     390       1     390     390     760  100.0  0
MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPDCTVVDLSGQIL
CPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKT
RALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLAN
MAAESRVGGLLGGKPGVTVFHMGDSKKALQPVYDLLENCDVPISKLLPTHVNRNVPLFEQ
ALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLT
HIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLSGKGEILPGNDADLLVMT
PELRIEQVYARGKLMVKDGKACVKGTFETA
>gi|223713519|gb|ACDM01000079.1| GENE    32     28281  -     28742    573    153 aa, chain - ## HITS:1  COG:ECs5287 KEGG:ns NR:ns ## COG: ECs5287 COG0700 # Protein_GI_number: 15834541 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1     153       1     153     153     261  100.0  4e-70
MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMA
LWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTVLLPAMYLMGNPVQNVGRC
LGTAEVNAKYYPHIITVCVINALLSIWVMQLIV
>gi|223713519|gb|ACDM01000079.1| GENE    33     28739  -     29434    662    231 aa, chain - ## HITS:1  COG:ECs5288 KEGG:ns NR:ns ## COG: ECs5288 COG3314 # Protein_GI_number: 15834542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     231       1     231     231     399  100.0  1e-111
MGIVMTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWRVFDFSVLNGSFG
QLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDGLGGLRAAQQLMTPV
LKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAYQTSGSAIITNY
FSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEERRNPTQGAQA
>gi|223713519|gb|ACDM01000079.1| GENE    34     29672  -     30226    466    184 aa, chain + ## HITS:1  COG:kptA KEGG:ns NR:ns ## COG: kptA COG1859 # Protein_GI_number: 16132152 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNA:NAD 2'-phosphotransferase # Organism: Escherichia coli K12 # 1     184      35     218     218     366  100.0  1e-101
MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT
VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGL
IAGERHYVHLSADEATARKVGARHGSPVILTVKAQEMAKRGLPFWQAENGVWLTSTVAVE
FLEW
>gi|223713519|gb|ACDM01000079.1| GENE    35     30239  -     31360    834    373 aa, chain - ## HITS:1  COG:yjiJ KEGG:ns NR:ns ## COG: yjiJ COG0477 # Protein_GI_number: 16132153 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     373      20     392     392     561   99.0  1e-160
MLVLTLGMGLGRFLYTPMLPVMMAEGSFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPS
RLRPFLLASALASGLLILAMAWLPPFILVLLIRVLAGVASAGMLIFGSTLIMQHTRHPFV
LAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSGMMLIALTLLMPSKKHAITP
MPLAKTEQQIMSWWLLAILYGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVP
GCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASDSPLLLIISSLGFGGTFMGTTSLVM
TIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLGNGTSALASATLCGAAALFIAALI
STVQLFKLQVVTS
>gi|223713519|gb|ACDM01000079.1| GENE    36     31485  -     32345    529    286 aa, chain - ## HITS:1  COG:yjiK KEGG:ns NR:ns ## COG: yjiK COG3204 # Protein_GI_number: 16132154 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     286      38     323     323     548   97.0  1e-156
MTKSISLSKRIFVIVILFVIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNI
SSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDER
DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV
NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE
MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSSH
>gi|223713519|gb|ACDM01000079.1| GENE    37     32410  -     32667    125     85 aa, chain - ## HITS:1  COG:no KEGG:SDY_4595 NR:ns ## KEGG: SDY_4595 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1      85       1      85      85     177  100.0  1e-43
MKEYLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLCIWLTCPPGEEIQWVIP
GHTESVYCQQDGGWRCIAHYGISPR
>gi|223713519|gb|ACDM01000079.1| GENE    38     32664  -     33431    437    255 aa, chain - ## HITS:1  COG:yjiL KEGG:ns NR:ns ## COG: yjiL COG1924 # Protein_GI_number: 16132155 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Escherichia coli K12 # 1     254       3     256     257     474   96.0  1e-134
MAYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLT
GYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMND
KCAAGTGRFLEVISRTLGTNVEQLDSITENVTPHAITSMCTVFAESEVISLRSAGVAPEA
ILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQRFTHMLESHLGMPVQTHPDAQFAG
AIGAAVIGQRQRKRA
>gi|223713519|gb|ACDM01000079.1| GENE    39     33441  -     34592   1358    383 aa, chain - ## HITS:1  COG:yjiM KEGG:ns NR:ns ## COG: yjiM COG1775 # Protein_GI_number: 16132156 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Escherichia coli K12 # 1     383       8     390     390     794  100.0  0
MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCS
TSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAE
FKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRAL
ANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRP
RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAI
GCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAI
ETDYSTSDVGQLSTRVAAFIEML
>gi|223713519|gb|ACDM01000079.1| GENE    40     34708  -     35955   1120    415 aa, chain - ## HITS:1  COG:yjiN KEGG:ns NR:ns ## COG: yjiN COG2733 # Protein_GI_number: 16132157 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 13     415      24     426     426     781  100.0  0
MLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVALFRRVPIPIIS
RHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFSQPENARRVGQH
LLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHQVLLDTLIA
QLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISR
DRAHQIRHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLK
VDINSEDSRVKERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISD
TVKSWDARDMSRQIELNIGKDLQFIRVNGTLVGGCIGLILYLLSQLPALFPLGNF
>gi|223713519|gb|ACDM01000079.1| GENE    41     36029  -     37288   1162    419 aa, chain - ## HITS:1  COG:ECs5300 KEGG:ns NR:ns ## COG: ECs5300 COG0477 # Protein_GI_number: 15834554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 15     419       6     410     410     698   98.0  0
MNNHFGKGLMAGLKATHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFNADVSLAP
AAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMTQFLIARAIQ
GTSICFIATVGYVTVQEAFGQTKGIRLMAIITSIVLIAPIIGPLSGAALMHFVHWKVLFA
IIAIMGFISFVGLLLAMPETVKRGAVSFSAKSVLRDFRNVFCNRQFLFGAATISLSYIPM
MSWVAVSPVILIDAGGLTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ
LVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNM
VILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAAELAEEQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:22:52 2011
 Seq name: gi|223713518|gb|ACDM01000080.1| Escherichia sp. 4_1_40B cont1.80, whole genome shotgun sequence 
 Length of sequence - 40073 bp
 Number of predicted genes - 41, with homology - 41
 Number of transcription units - 20, operones - 12 average op.length -  2.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        87 -       146    5.8 
     1     1 Op  1   5/0.273   +    CDS        183 -       470    375  ## COG2929 Uncharacterized protein conserved in bacteria
     2     1 Op  2     .       +    CDS        457 -       759    383  ## COG3514 Uncharacterized protein conserved in bacteria
                               -    Term       749 -       782    1.2 
     3     2 Op  1   3/0.364   -    CDS        793 -      1749   1047  ## COG0523 Putative GTPases (G3E family)
     4     2 Op  2   9/0.000   -    CDS       1760 -      1963    280  ## COG2879 Uncharacterized small protein
                               -    Term      1974 -      2003    3.5 
     5     2 Op  3     .       -    CDS       2013 -      4163   2774  ## COG1966 Carbon starvation protein, predicted membrane protein
                               +    Prom      4358 -      4417    5.4 
     6     3 Tu  1     .       +    CDS       4540 -      6204   1749  ## COG0840 Methyl-accepting chemotaxis protein
                               -    Term      6203 -      6244    7.1 
     7     4 Op  1     .       -    CDS       6253 -      7614   1357  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom      7646 -      7705    1.8 
                               -    Term      7669 -      7712    1.7 
     8     4 Op  2     .       -    CDS       7829 -      8743    511  ## COG1802 Transcriptional regulators
                               -    Prom      8768 -      8827    4.0 
                               +    Prom      8732 -      8791    3.9 
     9     5 Tu  1     .       +    CDS       8882 -      9904   1062  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
                               +    Term      9932 -      9970    3.4 
                               -    Term      9990 -     10032   11.9 
    10     6 Tu  1     .       -    CDS      10044 -     12335   2144  ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
                               -    Prom     12387 -     12446    4.2 
                               -    Term     12534 -     12578    5.1 
    11     7 Op  1     .       -    CDS      12589 -     13080    493  ## S4661 hypothetical protein
    12     7 Op  2     .       -    CDS      13132 -     13869    824  ## COG1484 DNA replication protein
    13     7 Op  3     .       -    CDS      13872 -     14411    534  ## COG5529 Pyocin large subunit
                               -    Prom     14452 -     14511    2.1 
                               -    Term     14454 -     14501    7.8 
    14     8 Op  1  12/0.000   -    CDS      14518 -     14991    473  ## COG3610 Uncharacterized conserved protein
    15     8 Op  2     .       -    CDS      14982 -     15806    341  ## COG2966 Uncharacterized conserved protein
                               +    Prom     16238 -     16297    4.1 
    16     9 Op  1     .       +    CDS      16422 -     17096    309  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
    17     9 Op  2     .       +    CDS      17108 -     17731    281  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
                               +    Term     17741 -     17776    2.4 
    18    10 Tu  1     .       -    CDS      17769 -     18557    588  ## COG4114 Uncharacterized Fe-S protein
                               -    Prom     18647 -     18706    8.3 
                               +    Prom     18606 -     18665    4.4 
    19    11 Tu  1     .       +    CDS      18698 -     18934    210  ## UTI89_C5074 hypothetical protein
                               -   TRNA      18973 -     19059   69.1  # Leu CAG 0 0
                               -   TRNA      19093 -     19179   69.1  # Leu CAG 0 0
                               -    Term     19319 -     19367    4.1 
    20    12 Tu  1     .       -    CDS      19379 -     20410    269  ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative
                               -    Prom     20433 -     20492    6.0 
                               +    Prom     20431 -     20490    3.0 
    21    13 Op  1   8/0.091   +    CDS      20513 -     20926    327  ## COG3050 DNA polymerase III, psi subunit
    22    13 Op  2   4/0.273   +    CDS      20895 -     21341    753  ## PROTEIN SUPPORTED gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase
    23    13 Op  3   3/0.364   +    CDS      21356 -     22033    714  ## COG1011 Predicted hydrolase (HAD superfamily)
    24    13 Op  4   5/0.273   +    CDS      22124 -     23713   1975  ## COG4108 Peptide chain release factor RF-3
                               +    Term     23724 -     23763    8.0 
    25    14 Op  1     .       +    CDS      24106 -     24711    733  ## COG2823 Predicted periplasmic or secreted lipoprotein
    26    14 Op  2     .       +    CDS      24838 -     24999    195  ## gi|157368899|ref|YP_001476888.1| hypothetical protein Spro_0654
                               +    Term     25026 -     25068   11.9 
                               +    Prom     25034 -     25093    2.3 
    27    15 Op  1   4/0.273   +    CDS      25121 -     26194    901  ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily
    28    15 Op  2     .       +    CDS      26191 -     26970    809  ## COG0084 Mg-dependent DNase
    29    16 Tu  1     .       -    CDS      27087 -     27821    593  ## COG1180 Pyruvate-formate lyase-activating enzyme
                               -    Term     27861 -     27896    4.0 
    30    17 Tu  1     .       -    CDS      27922 -     29472   1479  ## EcSMS35_4928 hypothetical protein
                               -    Prom     29576 -     29635    4.7 
                               +    Prom     29626 -     29685    4.1 
    31    18 Op  1   7/0.182   +    CDS      29730 -     30509   1053  ## COG0274 Deoxyribose-phosphate aldolase
    32    18 Op  2   4/0.273   +    CDS      30587 -     31909   1857  ## COG0213 Thymidine phosphorylase
    33    18 Op  3   9/0.000   +    CDS      31961 -     33184   1528  ## COG1015 Phosphopentomutase
                               +    Term     33192 -     33225    3.0 
    34    18 Op  4     .       +    CDS      33241 -     33960    983  ## COG0813 Purine-nucleoside phosphorylase
                               +    Term     33987 -     34038    9.3 
    35    19 Op  1   2/0.636   -    CDS      34121 -     34384    154  ## COG1396 Predicted transcriptional regulators
    36    19 Op  2   2/0.636   -    CDS      34416 -     35432   1146  ## COG0095 Lipoate-protein ligase A
    37    19 Op  3     .       -    CDS      35460 -     36104    755  ## COG3726 Uncharacterized membrane protein affecting hemolysin expression
                               -    Prom     36186 -     36245    4.6 
                               +    Prom     36113 -     36172    3.1 
    38    20 Op  1   5/0.273   +    CDS      36210 -     37178   1103  ## COG0560 Phosphoserine phosphatase
    39    20 Op  2   1/0.818   +    CDS      37227 -     38609   1442  ## COG1066 Predicted ATP-dependent serine protease
    40    20 Op  3     .       +    CDS      38630 -     39862   1379  ## COG3172 Predicted ATPase/kinase involved in NAD metabolism
    41    20 Op  4     .       +    CDS      39896 -     40063     81  ## EcSMS35_4940 hypothetical protein
Predicted protein(s)
>gi|223713518|gb|ACDM01000080.1| GENE     1       183  -       470    375     95 aa, chain + ## HITS:1  COG:STM4528 KEGG:ns NR:ns ## COG: STM4528 COG2929 # Protein_GI_number: 16767772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1      95       1      95      95     158   85.0  2e-39
MPMEFEWDENKAKSNRVKHGIRFEDAVLLFDDPQHLSQQERIENGEYRWQTIGLVYGIVV
ILVAHTIRFESGNEIIRIISARKADRKERNRYEHG
>gi|223713518|gb|ACDM01000080.1| GENE     2       457  -       759    383    100 aa, chain + ## HITS:1  COG:STM4529 KEGG:ns NR:ns ## COG: STM4529 COG3514 # Protein_GI_number: 16767773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1     100       1     100     100     151   85.0  3e-37
MSMVKHKRGTSSTLDVQHEAELKALANKSDEDIDYSDIPPSSDEQWSNAERGKFYRPLKT
QASVRIDADVMEWLKRPGKGYQTRLNAILREAMLRDQNKK
>gi|223713518|gb|ACDM01000080.1| GENE     3       793  -      1749   1047    318 aa, chain - ## HITS:1  COG:STM4530 KEGG:ns NR:ns ## COG: STM4530 COG0523 # Protein_GI_number: 16767774 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Salmonella typhimurium LT2 # 1     318       1     318     318     586   91.0  1e-167
MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL
TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEILCQR
YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLRERLARINARA
PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV
SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI
GIQLPEEEIRAAFAGLRK
>gi|223713518|gb|ACDM01000080.1| GENE     4      1760  -      1963    280     67 aa, chain - ## HITS:1  COG:ECs5312 KEGG:ns NR:ns ## COG: ECs5312 COG2879 # Protein_GI_number: 15834566 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli O157:H7 # 1      67       1      67      67     127  100.0  4e-30
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDG
KGGMRCC
>gi|223713518|gb|ACDM01000080.1| GENE     5      2013  -      4163   2774    716 aa, chain - ## HITS:1  COG:ECs5313 KEGG:ns NR:ns ## COG: ECs5313 COG1966 # Protein_GI_number: 15834567 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     716       6     721     721    1340   99.0  0
MDTKKIFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASVSVYLVAYRYYSLYIAQ
KVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTL
WLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPVPGTIALFGCFLIMIIILAVL
ALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPGRVGEVSVIGIVLLVASIYFGGV
IAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLILAPRDYLATFLKIGVIVGLALGI
VVLNPELKMPAMTQYIDGTGPLWKGALFPFLFITIACGAVSGFHALISSGTTPKLLANET
DARFIGYGAMLMESFVAIMALVAASIIEPGLYFAMNTPPAGLGITMPNLHEMGGENAPII
MAQLKDVTAHAAATVSSWGFVISPEQILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKV
LPMADMGFWYHFGILFEALFILTALDAGTRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGT
AGCVGLWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVT
VVPAVWLLICTTWALGLKLFSTNPQMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVN
NYTNAGLSILFLIVVYSIIFYGFKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH
>gi|223713518|gb|ACDM01000080.1| GENE     6      4540  -      6204   1749    554 aa, chain + ## HITS:1  COG:ECs5315 KEGG:ns NR:ns ## COG: ECs5315 COG0840 # Protein_GI_number: 15834569 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 # 1     554       1     554     554     899   99.0  0
MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVAL
LQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTA
AAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQDDRLYDI
AVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKP
IEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAA
SLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQK
IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL
IEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEM
DRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKNVTPATPR
KMAVADSGENWETF
>gi|223713518|gb|ACDM01000080.1| GENE     7      6253  -      7614   1357    453 aa, chain - ## HITS:1  COG:yjiZ KEGG:ns NR:ns ## COG: yjiZ COG0477 # Protein_GI_number: 16132177 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     453       1     453     453     877   99.0  0
MEKENITLDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAMLLLFFAAVINYLDRSS
LSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRLMLGLGMFFWSLF
QAMSGMVHSFTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVA
VSPPILAAMMLVMGWRGMFITIGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNA
RRDPLSFAEWRSLFRNRTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAA
IPFLFGAAGMLVNGYVTDWLVKGGMAPIKSRKICIIAGMFCSAAFTLVVPQATTSMTAVL
LIGMALFCIHFAGTSCWGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHS
FRLALIICGCVTAAGALAYIFLVRQPINDPRKD
>gi|223713518|gb|ACDM01000080.1| GENE     8      7829  -      8743    511    304 aa, chain - ## HITS:1  COG:ECs5317 KEGG:ns NR:ns ## COG: ECs5317 COG1802 # Protein_GI_number: 15834571 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 37     304       1     268     268     516  100.0  1e-146
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQ
VGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAG
VSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPD
HDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIF
HFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENT
RYAH
>gi|223713518|gb|ACDM01000080.1| GENE     9      8882  -      9904   1062    340 aa, chain + ## HITS:1  COG:yjjN KEGG:ns NR:ns ## COG: yjjN COG1063 # Protein_GI_number: 16132179 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     340       6     345     345     671   99.0  0
MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVL
GHEICGEIVGLGKNIANLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGF
SEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAIAPGEQVLVVGAGPIGLGAAA
IAKADGAQVVVADTSPARREHVATRLELPVLDPSAEDFDAQLRAQFGGSLAQKVIDATGN
QHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHKKETTMMGSRNATPEDFAKVGRLMA
EGKITADMMLTHRYPFATLAETYERDVINNRELIKGVITF
>gi|223713518|gb|ACDM01000080.1| GENE    10     10044  -     12335   2144    763 aa, chain - ## HITS:1  COG:mdoB KEGG:ns NR:ns ## COG: mdoB COG1368 # Protein_GI_number: 16132180 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Escherichia coli K12 # 14     763       1     750     750    1523   99.0  0
MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAV
LYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALG
SVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNE
AFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFF
PQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRND
WGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQS
FSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRG
DKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPD
IIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLA
DFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKD
TVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQL
GDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEKTLVLGNEVTTTTLHFDNP
TDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG
>gi|223713518|gb|ACDM01000080.1| GENE    11     12589  -     13080    493    163 aa, chain - ## HITS:1  COG:no KEGG:S4661 NR:ns ## KEGG: S4661 # Name: yjjA # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1     163       3     165     165     264   99.0  1e-69
MKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNSTTQEGGWSLASLTNLLS
SGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGI
QGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS
>gi|223713518|gb|ACDM01000080.1| GENE    12     13132  -     13869    824    245 aa, chain - ## HITS:1  COG:ECs5321 KEGG:ns NR:ns ## COG: ECs5321 COG1484 # Protein_GI_number: 15834575 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Escherichia coli O157:H7 # 1     245       1     245     245     473  100.0  1e-133
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRS
GIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAIC
NELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYE
KVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV
TGKEY
>gi|223713518|gb|ACDM01000080.1| GENE    13     13872  -     14411    534    179 aa, chain - ## HITS:1  COG:ECs1768 KEGG:ns NR:ns ## COG: ECs1768 COG5529 # Protein_GI_number: 15831022 # Func_class: R General function prediction only # Function: Pyocin large subunit # Organism: Escherichia coli O157:H7 # 78     153     184     266     346      77   51.0  1e-14
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL
ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE
LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG
>gi|223713518|gb|ACDM01000080.1| GENE    14     14518  -     14991    473    157 aa, chain - ## HITS:1  COG:STM4545 KEGG:ns NR:ns ## COG: STM4545 COG3610 # Protein_GI_number: 16767789 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1     157       1     157     157     244   87.0  6e-65
MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIE
WSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEP
LMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV
>gi|223713518|gb|ACDM01000080.1| GENE    15     14982  -     15806    341    274 aa, chain - ## HITS:1  COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     274       4     277     277     540   98.0  1e-153
MDSHYLNNTQHVYDKGRVMQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALG
MDSVESSISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHHLLDYKGV
EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTVAMYIRQLLAQRH
LHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHI
NTGLARWAIASLLTLATCVGVVMALTIWGLRGWV
>gi|223713518|gb|ACDM01000080.1| GENE    16     16422  -     17096    309    224 aa, chain + ## HITS:1  COG:ECs5325 KEGG:ns NR:ns ## COG: ECs5325 COG2197 # Protein_GI_number: 15834579 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     224      18     241     241     424  100.0  1e-119
MQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLI
SQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLT
SPAMTETHDFSYRSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLA
IHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS
>gi|223713518|gb|ACDM01000080.1| GENE    17     17108  -     17731    281    207 aa, chain + ## HITS:1  COG:ECs5326 KEGG:ns NR:ns ## COG: ECs5326 COG2197 # Protein_GI_number: 15834580 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     207      19     225     225     395   99.0  1e-110
MSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVIFSFSAMRSERREGLSCLT
ELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQAT
DRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVS
SDAGLLEAADILLCMRHCEASNVLHPY
>gi|223713518|gb|ACDM01000080.1| GENE    18     17769  -     18557    588    262 aa, chain - ## HITS:1  COG:ECs5327 KEGG:ns NR:ns ## COG: ECs5327 COG4114 # Protein_GI_number: 15834581 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli O157:H7 # 1     262       1     262     262     509   96.0  1e-144
MAYRSAPLYEDVIWRTHLQPQDAGLAQAIRATIAEHREHLLEFIRLDEPAPLNAMTLAQW
SSTNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDV
SPEHFHVEFHETGRAACFWVDVCEDKNATLHSPQQRMETLISQALVPVVQALEATGEING
KLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKMLTNGEDNPLWRTVVLRDGLLV
RRTCCQRYRLPDVQQCGDCTLK
>gi|223713518|gb|ACDM01000080.1| GENE    19     18698  -     18934    210     78 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C5074 NR:ns ## KEGG: UTI89_C5074 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      78      38     115     115     122   98.0  4e-27
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLILTPVMLYHKQLRHYVLLPS
CLALIAGIMLMIMNLNQG
>gi|223713518|gb|ACDM01000080.1| GENE    20     19379  -     20410    269    343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 78     334     106     368     371 108  30 7e-23
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMG
DNARFSLVATADDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRS
AEQMLADYAPLNKVDSARRCGLYFGRLEKQPEFDADKFWGEYNVDGLTVKTLPGVFSRDG
LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL
AANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELR
IVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>gi|223713518|gb|ACDM01000080.1| GENE    21     20513  -     20926    327    137 aa, chain + ## HITS:1  COG:ECs5330 KEGG:ns NR:ns ## COG: ECs5330 COG3050 # Protein_GI_number: 15834584 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, psi subunit # Organism: Escherichia coli O157:H7 # 1     137       1     137     137     252   99.0  1e-67
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA
LTVSPDQVLQLTPEKISMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA
LWQQICTYEHDFFPRND
>gi|223713518|gb|ACDM01000080.1| GENE    22     20895  -     21341    753    148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase [Escherichia coli O157:H7 EDL933] # 1     148       1     148     148 294  100 5e-79
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVV
LDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGF
NEATIRRNYYPTTDGREDAIIMALPISM
>gi|223713518|gb|ACDM01000080.1| GENE    23     21356  -     22033    714    225 aa, chain + ## HITS:1  COG:ECs5332 KEGG:ns NR:ns ## COG: ECs5332 COG1011 # Protein_GI_number: 15834586 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1     225       1     225     225     469   99.0  1e-132
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITS
LQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGF
SALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAES
DILGGINAGLATCWLNAHNREQPEGIAPTWTVSSLHELEQLLCKH
>gi|223713518|gb|ACDM01000080.1| GENE    24     22124  -     23713   1975    529 aa, chain + ## HITS:1  COG:ECs5333 KEGG:ns NR:ns ## COG: ECs5333 COG4108 # Protein_GI_number: 15834587 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Escherichia coli O157:H7 # 1     529       1     529     529    1088  100.0  0
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWM
EMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE
DRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFK
GVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNE
FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFV
FKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAY
PGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLS
EEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAK
KFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>gi|223713518|gb|ACDM01000080.1| GENE    25     24106  -     24711    733    201 aa, chain + ## HITS:1  COG:ECs5334 KEGG:ns NR:ns ## COG: ECs5334 COG2823 # Protein_GI_number: 15834588 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Escherichia coli O157:H7 # 1     201       1     201     201     264   99.0  8e-71
MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAIT
AKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLH
VRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDR
AESIAKAVDGVKSVKNDLKTK
>gi|223713518|gb|ACDM01000080.1| GENE    26     24838  -     24999    195     53 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|157368899|ref|YP_001476888.1| ## NR: gi|157368899|ref|YP_001476888.1| hypothetical protein Spro_0654 [Serratia proteamaculans 568] # 1      53      33      85      85      77   92.0  4e-13
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>gi|223713518|gb|ACDM01000080.1| GENE    27     25121  -     26194    901    357 aa, chain + ## HITS:1  COG:ECs5335 KEGG:ns NR:ns ## COG: ECs5335 COG4667 # Protein_GI_number: 15834589 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 1     357       1     357     357     728   99.0  0
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGT
SAGAQNLSAYICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQ
MDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGIN
YLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQ
HHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLAT
VGKLLTEKAPLTRHLVPVVTPESIVIPPASVANDTLVAEVIDAPQANDPTFNNEDLA
>gi|223713518|gb|ACDM01000080.1| GENE    28     26191  -     26970    809    259 aa, chain + ## HITS:1  COG:yjjVm KEGG:ns NR:ns ## COG: yjjVm COG0084 # Protein_GI_number: 16132266 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli K12 # 1     258       1     258     259     496   96.0  1e-140
MICRFIDTHCHFDFPPFSGDEEASLQRAEQAGVGKIIVPATEAENFARVQALAEKYQPLY
GALGLHPGMLEKHSDASLEQLQQALERHPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQL
KLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGG
TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRLEP
ADEIAEVLLNNTYTLFNVL
>gi|223713518|gb|ACDM01000080.1| GENE    29     27087  -     27821    593    244 aa, chain - ## HITS:1  COG:yjjW KEGG:ns NR:ns ## COG: yjjW COG1180 # Protein_GI_number: 16132196 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1     244      44     287     287     473   95.0  1e-133
MGRCNDCGECVPQCPHQALQIIDGKVAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVL
NHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEK
LLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQ
HIEELAALIKGLGDVPVRLNAFHAHGVYGEAQSWPSATQEDIEPLADALKVRGVSRLIFP
ALYL
>gi|223713518|gb|ACDM01000080.1| GENE    30     27922  -     29472   1479    516 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_4928 NR:ns ## KEGG: EcSMS35_4928 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     516       1     516     516    1072   99.0  0
MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPALPAEARRALDEGVICDM
FEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLG
QLDALLQPYVRILTQDEIDIRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAEL
KQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSL
PLAGGGSTLVRLNLKAIAERSESLEDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENS
FLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEATANEVGYRISAQLAEFV
ANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGIS
DILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEG
SRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ
>gi|223713518|gb|ACDM01000080.1| GENE    31     29730  -     30509   1053    259 aa, chain + ## HITS:1  COG:ECs5340 KEGG:ns NR:ns ## COG: ECs5340 COG0274 # Protein_GI_number: 15834594 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Escherichia coli O157:H7 # 1     259       1     259     259     446  100.0  1e-125
MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL
KEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFD
LVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPE
SARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSL
LASLLKALGHGDGKSASSY
>gi|223713518|gb|ACDM01000080.1| GENE    32     30587  -     31909   1857    440 aa, chain + ## HITS:1  COG:ZdeoA KEGG:ns NR:ns ## COG: ZdeoA COG0213 # Protein_GI_number: 15804954 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Escherichia coli O157:H7 EDL933 # 1     440       1     440     440     816  100.0  0
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLT
MAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHT
GGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSI
PLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLT
DMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKL
QAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALG
MAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENSWQEAAKAVKAA
IKLADKAPESTPTVYRRISE
>gi|223713518|gb|ACDM01000080.1| GENE    33     31961  -     33184   1528    407 aa, chain + ## HITS:1  COG:ECs5342 KEGG:ns NR:ns ## COG: ECs5342 COG1015 # Protein_GI_number: 15834596 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Escherichia coli O157:H7 # 1     407       1     407     407     840  100.0  0
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLG
LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH
ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT
REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>gi|223713518|gb|ACDM01000080.1| GENE    34     33241  -     33960    983    239 aa, chain + ## HITS:1  COG:ECs5343 KEGG:ns NR:ns ## COG: ECs5343 COG0813 # Protein_GI_number: 15834597 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     469   99.0  1e-132
MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISV
MGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIR
FKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLFYSPDGEMFDVMEKYGILGVE
MEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>gi|223713518|gb|ACDM01000080.1| GENE    35     34121  -     34384    154     87 aa, chain - ## HITS:1  COG:ECs5344 KEGG:ns NR:ns ## COG: ECs5344 COG1396 # Protein_GI_number: 15834598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1      87       1      87      87     150   96.0  8e-37
MIDLENQEREIINLMFSQGISWLTAVRIRHKLSLAEVSKMLGISINSLKQIEKTERLSSN
IKSKMAGIYGCPPELLICPSWMTAEHK
>gi|223713518|gb|ACDM01000080.1| GENE    36     34416  -     35432   1146    338 aa, chain - ## HITS:1  COG:Z5988_2 KEGG:ns NR:ns ## COG: Z5988_2 COG0095 # Protein_GI_number: 15804958 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Escherichia coli O157:H7 EDL933 # 1     338       5     342     342     694   98.0  0
MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRR
MEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASG
RNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITS
VRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPDKTPDLPNFTETFARQS
SWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQG
CLYRADMLQQECEALLVDFPEQEKELRELSTWIAGAVR
>gi|223713518|gb|ACDM01000080.1| GENE    37     35460  -     36104    755    214 aa, chain - ## HITS:1  COG:ECs5345_1 KEGG:ns NR:ns ## COG: ECs5345_1 COG3726 # Protein_GI_number: 15834599 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein affecting hemolysin expression # Organism: Escherichia coli O157:H7 # 1     205       1     205     224     365   99.0  1e-101
MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLKELARTLARQVTLNV
APLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKA
GGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLT
RTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE
>gi|223713518|gb|ACDM01000080.1| GENE    38     36210  -     37178   1103    322 aa, chain + ## HITS:1  COG:ECs5346 KEGG:ns NR:ns ## COG: ECs5346 COG0560 # Protein_GI_number: 15834600 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Escherichia coli O157:H7 # 1     322       1     322     322     635   99.0  0
MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKQRLTQYQSKLG
AAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRSPGLLVMDMDST
AIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENL
PLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVVANELEIMDGKFTGNVI
GDIVDAQYKAKTLTHLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKTE
VTIRHADLMGVFCILSGSLNQK
>gi|223713518|gb|ACDM01000080.1| GENE    39     37227  -     38609   1442    460 aa, chain + ## HITS:1  COG:ECs5347 KEGG:ns NR:ns ## COG: ECs5347 COG1066 # Protein_GI_number: 15834601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Escherichia coli O157:H7 # 1     460       1     460     460     902   99.0  0
MAKAPKRAFVCNECGADYPRWQGQCNACHAWNTITEVRLAASPTVARNERLSGYAGSAGV
AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA
QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ
VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV
MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV
NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA
KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
>gi|223713518|gb|ACDM01000080.1| GENE    40     38630  -     39862   1379    410 aa, chain + ## HITS:1  COG:nadR_3 KEGG:ns NR:ns ## COG: nadR_3 COG3172 # Protein_GI_number: 16132207 # Func_class: H Coenzyme transport and metabolism # Function: Predicted ATPase/kinase involved in NAD metabolism # Organism: Escherichia coli K12 # 224     409       1     186     187     380   99.0  1e-105
MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFP
RQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDDTRDRALFEDSAMSQQPTV
PDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKKFMAEKGIQPDLIYTSEE
ADAPQYMEHLGIETVLVDPKRTFMSISGAQIRENPFRYWEYIPTEVKPFFVRTVAILGGE
SSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFAVK
YANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLG
SSVDRKEFQNLLVEMLEENNIEFVRVEEDDYDSRFLRCVELVREMMGEQG
>gi|223713518|gb|ACDM01000080.1| GENE    41     39896  -     40063     81     55 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_4940 NR:ns ## KEGG: EcSMS35_4940 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      55       1      55      55      85   98.0  7e-16
MSFFDELKTSLEEAVEIKQGLKKPARVTRHEIEDAKAVVDRKRCSRRIRHSVLNA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:23:19 2011
 Seq name: gi|223713517|gb|ACDM01000081.1| Escherichia sp. 4_1_40B cont1.81, whole genome shotgun sequence 
 Length of sequence - 28227 bp
 Number of predicted genes - 25, with homology - 25
 Number of transcription units - 16, operones - 6 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         97 -      1764   2307  ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains
                               -    Prom      1861 -      1920    3.2 
     2     2 Op  1   4/0.444   +    CDS       1975 -      3912   1752  ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
     3     2 Op  2     .       +    CDS       4002 -      4328    380  ## COG2973 Trp operon repressor
                               +    Term      4350 -      4415    3.1 
     4     3 Tu  1     .       -    CDS       4413 -      4934    422  ## COG1986 Uncharacterized conserved protein
                               -    Prom      4961 -      5020    4.3 
                               +    Prom      4885 -      4944    2.7 
     5     4 Tu  1     .       +    CDS       4986 -      5633    650  ## COG0406 Fructose-2,6-bisphosphatase
     6     5 Tu  1     .       -    CDS       5630 -      6499    905  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom      6692 -      6751    4.5 
                               +    Prom      6606 -      6665    4.1 
     7     6 Op  1   4/0.444   +    CDS       6710 -      7183    519  ## COG3045 Uncharacterized protein conserved in bacteria
     8     6 Op  2  40/0.000   +    CDS       7196 -      7885    628  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
     9     6 Op  3   6/0.111   +    CDS       7885 -      9309   1261  ## COG0642 Signal transduction histidine kinase
    10     6 Op  4     .       +    CDS       9367 -     10719   1085  ## COG4452 Inner membrane protein involved in colicin E2 resistance
                               +    Term     10736 -     10766    3.0 
                               -    Term     10723 -     10753    3.0 
    11     7 Tu  1     .       -    CDS      10778 -     11494    862  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
                               +    Prom     11879 -     11938    8.1 
    12     8 Tu  1     .       +    CDS      12130 -     12816    500  ## COG0565 rRNA methylase
                               +    Prom     12894 -     12953    4.1 
    13     9 Op  1  11/0.000   +    CDS      13176 -     15638   2263  ## COG0527 Aspartokinases
    14     9 Op  2  19/0.000   +    CDS      15640 -     16572    755  ## COG0083 Homoserine kinase
    15     9 Op  3     .       +    CDS      16573 -     17859   1453  ## COG0498 Threonine synthase
                               +    Term     17883 -     17922    4.2 
                               +    Prom     17868 -     17927    2.9 
    16    10 Tu  1     .       +    CDS      18073 -     18369    154  ## ECUMN_0005 conserved hypothetical protein; putative exported protein
                               +    Term     18406 -     18445    3.7 
                               -    Term     18359 -     18403    2.2 
    17    11 Op  1   5/0.222   -    CDS      18523 -     19299    893  ## COG3022 Uncharacterized protein conserved in bacteria
    18    11 Op  2     .       -    CDS      19369 -     20799    812  ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21
                               -    Prom     20856 -     20915    4.3 
                               +    Prom     20972 -     21031    1.9 
    19    12 Tu  1     .       +    CDS      21078 -     22031   1300  ## COG0176 Transaldolase
                               +    Term     22039 -     22079    9.3 
                               +    Prom     22057 -     22116    2.4 
    20    13 Tu  1     .       +    CDS      22146 -     22733    692  ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16
                               -    Term     22723 -     22760    6.2 
    21    14 Tu  1   4/0.444   -    CDS      22768 -     23334    754  ## COG1584 Predicted membrane protein
                               -    Prom     23403 -     23462    4.5 
                               -    Term     23363 -     23403    3.2 
    22    15 Op  1     .       -    CDS      23483 -     24196    567  ## COG4735 Uncharacterized protein conserved in bacteria
    23    15 Op  2     .       -    CDS      24222 -     24626    375  ## JW0012 hypothetical protein
                               -    Prom     24719 -     24778    4.8 
                               +    Prom     24708 -     24767    5.7 
    24    16 Op  1  31/0.000   +    CDS      25003 -     26919   2335  ## COG0443 Molecular chaperone
                               +    Term     26948 -     26994   11.0 
    25    16 Op  2     .       +    CDS      27008 -     28138   1199  ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
Predicted protein(s)
>gi|223713517|gb|ACDM01000081.1| GENE     1        97  -      1764   2307    555 aa, chain - ## HITS:1  COG:ECs5349 KEGG:ns NR:ns ## COG: ECs5349 COG0488 # Protein_GI_number: 15834603 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1     555       1     555     555    1104  100.0  0
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIE
GEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDK
LAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEK
PDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPW
EGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNST
EYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGA
GKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNT
EMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETL
RALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGA
DALEPKRIKYKRIAK
>gi|223713517|gb|ACDM01000081.1| GENE     2      1975  -      3912   1752    645 aa, chain + ## HITS:1  COG:ECs5350 KEGG:ns NR:ns ## COG: ECs5350 COG0741 # Protein_GI_number: 15834604 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli O157:H7 # 1     645      10     654     654    1239   99.0  0
MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAWDNRQMDVVEQMMPRLK
DYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLA
FSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD
PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF
TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK
WRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG
REAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMY
WNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAY
NDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPS
YSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAV
AFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY
>gi|223713517|gb|ACDM01000081.1| GENE     3      4002  -      4328    380    108 aa, chain + ## HITS:1  COG:ECs5351 KEGG:ns NR:ns ## COG: ECs5351 COG2973 # Protein_GI_number: 15834605 # Func_class: K Transcription # Function: Trp operon repressor # Organism: Escherichia coli O157:H7 # 1     108       1     108     108     166  100.0  9e-42
MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE
LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
>gi|223713517|gb|ACDM01000081.1| GENE     4      4413  -      4934    422    173 aa, chain - ## HITS:1  COG:yjjX KEGG:ns NR:ns ## COG: yjjX COG1986 # Protein_GI_number: 16132211 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     170       4     173     173     325  100.0  3e-89
MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVA
NARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEAL
GPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYQAL
>gi|223713517|gb|ACDM01000081.1| GENE     5      4986  -      5633    650    215 aa, chain + ## HITS:1  COG:ECs5353 KEGG:ns NR:ns ## COG: ECs5353 COG0406 # Protein_GI_number: 15834607 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Escherichia coli O157:H7 # 1     215       1     215     215     406  100.0  1e-113
MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAKELGITHIISSDLGRTR
RTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIPEGE
SMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSIS
RVDYQESLWLASGWVVETAGDISHLDAPALDELQR
>gi|223713517|gb|ACDM01000081.1| GENE     6      5630  -      6499    905    289 aa, chain - ## HITS:1  COG:ECs5354 KEGG:ns NR:ns ## COG: ECs5354 COG2207 # Protein_GI_number: 15834608 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     289       1     289     289     597  100.0  1e-171
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
>gi|223713517|gb|ACDM01000081.1| GENE     7      6710  -      7183    519    157 aa, chain + ## HITS:1  COG:ECs5355 KEGG:ns NR:ns ## COG: ECs5355 COG3045 # Protein_GI_number: 15834609 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     157       1     157     157     291  100.0  3e-79
MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEAFDDPDVKNVTCYVSRA
KTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGEVVFKKRTSLVFKSLQVVR
FYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ
>gi|223713517|gb|ACDM01000081.1| GENE     8      7196  -      7885    628    229 aa, chain + ## HITS:1  COG:creB KEGG:ns NR:ns ## COG: creB COG0745 # Protein_GI_number: 16132215 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1     229       1     229     229     449   99.0  1e-126
MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDI
SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR
RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLM
DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL
>gi|223713517|gb|ACDM01000081.1| GENE     9      7885  -      9309   1261    474 aa, chain + ## HITS:1  COG:creC KEGG:ns NR:ns ## COG: creC COG0642 # Protein_GI_number: 16132216 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     474       1     474     474     910   99.0  0
MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLIDTATLLAELARPDLLSG
DPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDAQGKVLFDSANKAVGQDYSRW
NDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRLIGVLSVGKPNAAMAPVIKRS
ERRILWASAILLGIALVIGAGMVWWINRSIARLTRYADSVTDNKPVPLPDLGSSELRKLA
QALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPPEVVARFTDNILTQ
NARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAEKNITLHVTPTEVN
VAAEPALLDQALGNLLDNAIDFTPESGRITLSAEVDQEHVTLKVLDTGSGIPDYALSRIF
ERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLASLRLHRHFT
>gi|223713517|gb|ACDM01000081.1| GENE    10      9367  -     10719   1085    450 aa, chain + ## HITS:1  COG:ECs5358 KEGG:ns NR:ns ## COG: ECs5358 COG4452 # Protein_GI_number: 15834612 # Func_class: V Defense mechanisms # Function: Inner membrane protein involved in colicin E2 resistance # Organism: Escherichia coli O157:H7 # 1     450       1     450     450     840   98.0  0
MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLI
AIPVIELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLK
ADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQG
VHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNSEMTLTSNWPHPSFLGDFLPAKR
EVSESGFQAQWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAI
LLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIG
ALMNGIYLQAVLKGWRNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFV
TRNIDWYAFSLPKMKASKEVTTDDELRIWK
>gi|223713517|gb|ACDM01000081.1| GENE    11     10778  -     11494    862    238 aa, chain - ## HITS:1  COG:ECs5359 KEGG:ns NR:ns ## COG: ECs5359 COG0745 # Protein_GI_number: 15834613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     238       1     238     238     470  100.0  1e-133
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK
NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR
TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ
SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED
>gi|223713517|gb|ACDM01000081.1| GENE    12     12130  -     12816    500    228 aa, chain + ## HITS:1  COG:ECs5361 KEGG:ns NR:ns ## COG: ECs5361 COG0565 # Protein_GI_number: 15834615 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Escherichia coli O157:H7 # 1     228       1     228     228     422   98.0  1e-118
MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDVIDNIKV
FPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLT
NEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRER
VMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKNITK
>gi|223713517|gb|ACDM01000081.1| GENE    13     13176  -     15638   2263    820 aa, chain + ## HITS:1  COG:thrA_1 KEGG:ns NR:ns ## COG: thrA_1 COG0527 # Protein_GI_number: 16127996 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1     460       1     460     460     911  100.0  0
MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA
LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA
ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP
ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV
PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD
EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF
CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL
ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL
LEQLKRQQSWLKNKHIDLRVCGVANSKALLTSVHGLNLENWQEELAQAKEPFNLGRLIRL
VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR
RKFLYDTNVGAGLPVIENLQNLLNAGDELVKFSGILSGSLSYIFGKLDEGMSFSEATTLA
REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA
NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF
YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV
>gi|223713517|gb|ACDM01000081.1| GENE    14     15640  -     16572    755    310 aa, chain + ## HITS:1  COG:ECs0003 KEGG:ns NR:ns ## COG: ECs0003 COG0083 # Protein_GI_number: 15829257 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Escherichia coli O157:H7 # 1     310       1     310     310     638   99.0  0
MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEP
RENIVYQCWERFCQEQGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND
TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI
KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP
GFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRL
DTAGARVLEN
>gi|223713517|gb|ACDM01000081.1| GENE    15     16573  -     17859   1453    428 aa, chain + ## HITS:1  COG:ECs0004 KEGG:ns NR:ns ## COG: ECs0004 COG0498 # Protein_GI_number: 15829258 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Escherichia coli O157:H7 # 1     428       1     428     428     842   99.0  0
MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS
AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH
IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV
AIDGDFDACQTLVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQEARNQ
LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA
MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA
LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL
RKLMMNHQ
>gi|223713517|gb|ACDM01000081.1| GENE    16     18073  -     18369    154     98 aa, chain + ## HITS:1  COG:no KEGG:ECUMN_0005 NR:ns ## KEGG: ECUMN_0005 # Name: yaaX # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      84       1      84      98     134   98.0  7e-31
MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQH
YEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR
>gi|223713517|gb|ACDM01000081.1| GENE    17     18523  -     19299    893    258 aa, chain - ## HITS:1  COG:yaaA KEGG:ns NR:ns ## COG: yaaA COG3022 # Protein_GI_number: 16128000 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     258       1     258     258     510  100.0  1e-145
MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN
AARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP
LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK
PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF
DEDSSSNGELVFKRYEQR
>gi|223713517|gb|ACDM01000081.1| GENE    18     19369  -     20799    812    476 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 6     447       8     446     456 317  40 5e-86
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS
FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD
VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV
TGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFES
AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQM
IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA
FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA
ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
>gi|223713517|gb|ACDM01000081.1| GENE    19     21078  -     22031   1300    317 aa, chain + ## HITS:1  COG:ECs0008 KEGG:ns NR:ns ## COG: ECs0008 COG0176 # Protein_GI_number: 15829262 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli O157:H7 # 1     317       1     317     317     609  100.0  1e-174
MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK
QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN
DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG
RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD
RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR
KFAIDQEKLEKMIGDLL
>gi|223713517|gb|ACDM01000081.1| GENE    20     22146  -     22733    692    195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 6     191       2     191     194 271  73 4e-72
MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE
LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV
GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV
VAAFRPKSARRDVSE
>gi|223713517|gb|ACDM01000081.1| GENE    21     22768  -     23334    754    188 aa, chain - ## HITS:1  COG:ECs0010 KEGG:ns NR:ns ## COG: ECs0010 COG1584 # Protein_GI_number: 15829264 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     188       1     188     188     299  100.0  2e-81
MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKK
GNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKG
ARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRT
VLPIGESH
>gi|223713517|gb|ACDM01000081.1| GENE    22     23483  -     24196    567    237 aa, chain - ## HITS:1  COG:yaaW KEGG:ns NR:ns ## COG: yaaW COG4735 # Protein_GI_number: 16128005 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     237       1     237     237     394   99.0  1e-110
MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR
RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQ
FLRNTWKKMDEEHKQEFLHAVDTRVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTH
AAMSVLEHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQV
>gi|223713517|gb|ACDM01000081.1| GENE    23     24222  -     24626    375    134 aa, chain - ## HITS:1  COG:no KEGG:JW0012 NR:ns ## KEGG: JW0012 # Name: yaaI # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     134       1     134     134     245  100.0  3e-64
MKSVFTISASLAISLMLCCTAQANDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSAD
HGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTV
NSSDMATLKIIGDD
>gi|223713517|gb|ACDM01000081.1| GENE    24     25003  -     26919   2335    638 aa, chain + ## HITS:1  COG:ECs0014 KEGG:ns NR:ns ## COG: ECs0014 COG0443 # Protein_GI_number: 15829268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli O157:H7 # 1     638       1     638     638    1106  100.0  0
MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT
NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL
KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG
LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL
VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV
TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE
PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT
KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA
DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD
HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME
IAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK
>gi|223713517|gb|ACDM01000081.1| GENE    25     27008  -     28138   1199    376 aa, chain + ## HITS:1  COG:dnaJ KEGG:ns NR:ns ## COG: dnaJ COG0484 # Protein_GI_number: 16128009 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Escherichia coli K12 # 1     376       1     376     376     698   99.0  0
MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS
QKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYN
MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ
QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAP
AGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG
KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNEKQKQLLQELQESFGGPTGEHNSPRS
KSFFDGVKKFFDDLTR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:23:26 2011
 Seq name: gi|223713516|gb|ACDM01000082.1| Escherichia sp. 4_1_40B cont1.82, whole genome shotgun sequence 
 Length of sequence - 3369 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 2, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         21 -       173    139  ## ECO103_0016 regulatory protein MokC for HokC
                               +    Prom       669 -       728    3.9 
     2     2 Op  1   5/0.000   +    CDS        759 -      1925   1260  ## COG3004 Na+/H+ antiporter
                               +    Term      1941 -      1972    2.4 
     3     2 Op  2     .       +    CDS       1991 -      2890    793  ## COG0583 Transcriptional regulator
Predicted protein(s)
>gi|223713516|gb|ACDM01000082.1| GENE     1        21  -       173    139     50 aa, chain - ## HITS:1  COG:no KEGG:ECO103_0016 NR:ns ## KEGG: ECO103_0016 # Name: mokC # Def: regulatory protein MokC for HokC # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      50      20      69      69      74  100.0  1e-12
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE
>gi|223713516|gb|ACDM01000082.1| GENE     2       759  -      1925   1260    388 aa, chain + ## HITS:1  COG:ECs0017 KEGG:ns NR:ns ## COG: ECs0017 COG3004 # Protein_GI_number: 15829271 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1     388       1     388     388     630   99.0  0
MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNML
LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADP
ITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLS
MASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK
EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGK
PLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINW
AKLGILVGSISSAVIGYSWLRVRLRPSV
>gi|223713516|gb|ACDM01000082.1| GENE     3      1991  -      2890    793    299 aa, chain + ## HITS:1  COG:nhaR KEGG:ns NR:ns ## COG: nhaR COG0583 # Protein_GI_number: 16128014 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     299       3     301     301     629  100.0  1e-180
MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP
SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVEGE
PIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPE
KPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFV
APTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAVR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:24:12 2011
 Seq name: gi|223713515|gb|ACDM01000083.1| Escherichia sp. 4_1_40B cont1.83, whole genome shotgun sequence 
 Length of sequence - 142652 bp
 Number of predicted genes - 124, with homology - 123
 Number of transcription units - 55, operones - 29 average op.length -  3.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term       179 -       231    1.3 
     1     1 Tu  1     .       -    CDS        251 -       514    422  ## PROTEIN SUPPORTED gi|15799705|ref|NP_285717.1| 30S ribosomal protein S20
                               -    Prom       555 -       614    3.6 
                               +    Prom       361 -       420    5.2 
     2     2 Op  1     .       +    CDS        617 -       835     76  ## SDY_0046 hypothetical protein
     3     2 Op  2  16/0.000   +    CDS        843 -      1784    388  ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2
     4     2 Op  3  16/0.000   +    CDS       1827 -      4643   3126  ## COG0060 Isoleucyl-tRNA synthetase
     5     2 Op  4   7/0.000   +    CDS       4643 -      5137    566  ## COG0597 Lipoprotein signal peptidase
                               +    Prom      5159 -      5218    1.8 
     6     2 Op  5   7/0.000   +    CDS       5262 -      5711    257  ## PROTEIN SUPPORTED gi|225086978|ref|YP_002658248.1| ribosomal protein S2
     7     2 Op  6   3/0.727   +    CDS       5713 -      6663    439  ## PROTEIN SUPPORTED gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P
                               +    Term      6692 -      6725    2.1 
     8     2 Op  7   3/0.727   +    CDS       6729 -      7643    731  ## COG1957 Inosine-uridine nucleoside N-ribohydrolase
                               +    Term      7660 -      7699    3.3 
                               +    Prom      7664 -      7723    3.9 
     9     3 Tu  1     .       +    CDS       7810 -      8631    923  ## COG0289 Dihydrodipicolinate reductase
                               +    Term      8681 -      8724    1.0 
                               +    Prom      8998 -      9057    5.5 
    10     4 Op  1  24/0.000   +    CDS       9192 -     10235   1030  ## COG0505 Carbamoylphosphate synthase small subunit
    11     4 Op  2     .       +    CDS      10253 -     13474   4323  ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)
                               +    Term     13528 -     13559    2.5 
    12     5 Tu  1     .       -    CDS      13522 -     13701    125  ## ECUMN_0035 hypothetical protein
                               -    Prom     13870 -     13929    2.8 
                               +    Prom     13487 -     13546    6.4 
    13     6 Tu  1     .       +    CDS      13736 -     14131    314  ## SFV_0028 DNA-binding transcriptional activator CaiF
                               +    Term     14157 -     14212    1.9 
    14     7 Op  1   3/0.727   -    CDS      14340 -     14930    440  ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
    15     7 Op  2   5/0.318   -    CDS      14936 -     15829   1052  ## COG1024 Enoyl-CoA hydratase/carnithine racemase
    16     7 Op  3   4/0.591   -    CDS      15830 -     17383   1215  ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
    17     7 Op  4   8/0.000   -    CDS      17457 -     18674   1420  ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
                               -    Prom     18694 -     18753    2.2 
    18     7 Op  5   4/0.591   -    CDS      18803 -     19945   1412  ## COG1960 Acyl-CoA dehydrogenases
    19     7 Op  6     .       -    CDS      19976 -     21490   1662  ## COG1292 Choline-glycine betaine transporter
                               -    Prom     21514 -     21573    9.8 
                               +    Prom     21827 -     21886    3.9 
    20     8 Op  1  29/0.000   +    CDS      21928 -     22734    864  ## COG2086 Electron transfer flavoprotein, beta subunit
    21     8 Op  2   9/0.000   +    CDS      22749 -     23690    898  ## COG2025 Electron transfer flavoprotein, alpha subunit
    22     8 Op  3  12/0.000   +    CDS      23741 -     25027   1425  ## COG0644 Dehydrogenases (flavoproteins)
    23     8 Op  4   4/0.591   +    CDS      25024 -     25311    344  ## COG2440 Ferredoxin-like protein
    24     8 Op  5   4/0.591   +    CDS      25370 -     26701   1474  ## COG0477 Permeases of the major facilitator superfamily
                               +    Prom     26770 -     26829    4.4 
    25     9 Op  1   7/0.000   +    CDS      26866 -     27339    505  ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)
    26     9 Op  2   4/0.591   +    CDS      27332 -     29194   1031  ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2
                               +    Prom     29303 -     29362    7.0 
    27    10 Tu  1     .       +    CDS      29386 -     29865    653  ## COG0262 Dihydrofolate reductase
                               +    Term     29890 -     29935    8.4 
                               -    Term     29679 -     29713    0.5 
    28    11 Op  1   8/0.000   -    CDS      29943 -     30785    847  ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
    29    11 Op  2   8/0.000   -    CDS      30792 -     31169    327  ## COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport
    30    11 Op  3  12/0.000   -    CDS      31172 -     31993    748  ## COG0030 Dimethyladenosine transferase (rRNA methylation)
    31    11 Op  4  13/0.000   -    CDS      31990 -     32979    461  ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32
    32    11 Op  5  16/0.000   -    CDS      32979 -     34265   1402  ## COG0760 Parvulin-like peptidyl-prolyl isomerase
    33    11 Op  6     .       -    CDS      34318 -     36672   2119  ## COG1452 Organic solvent tolerance protein OstA
                               -    Prom     36817 -     36876    2.4 
                               +    Prom     36653 -     36712    3.3 
    34    12 Tu  1     .       +    CDS      36927 -     37742    799  ## COG1076 DnaJ-domain-containing proteins 1
                               +    Term     37844 -     37888    6.1 
    35    13 Op  1   7/0.000   -    CDS      37859 -     38518    218  ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit
    36    13 Op  2   5/0.318   -    CDS      38530 -     41436   3772  ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family
    37    14 Op  1   3/0.727   -    CDS      41601 -     43952   1810  ## COG0417 DNA polymerase elongation subunit (family B)
                               -    Term     43957 -     43997    5.8 
    38    14 Op  2   5/0.318   -    CDS      44027 -     44722    636  ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
                               -    Prom     44823 -     44882    2.6 
                               -    Term     44779 -     44815   -0.5 
    39    15 Op  1   7/0.000   -    CDS      44891 -     46393   1598  ## COG2160 L-arabinose isomerase
    40    15 Op  2     .       -    CDS      46404 -     48104   1711  ## COG1069 Ribulose kinase
                               -    Prom     48252 -     48311    4.2 
                               +    Prom     48211 -     48270    4.8 
    41    16 Op  1   4/0.591   +    CDS      48392 -     49321    615  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Prom     49325 -     49384    3.3 
    42    16 Op  2     .       +    CDS      49407 -     50171    901  ## COG0586 Uncharacterized membrane-associated protein
    43    17 Op  1  11/0.000   -    CDS      50285 -     50983    186  ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P
    44    17 Op  2  14/0.000   -    CDS      50967 -     52577   1644  ## COG1178 ABC-type Fe3+ transport system, permease component
    45    17 Op  3   2/0.773   -    CDS      52553 -     53536   1025  ## COG4143 ABC-type thiamine transport system, periplasmic component
                               -    Term     53543 -     53594    9.0 
    46    18 Tu  1     .       -    CDS      53700 -     55355   1356  ## COG4533 ABC-type uncharacterized transport system, periplasmic component
                               +    Prom     55363 -     55422    3.1 
    47    19 Op  1     .       +    CDS      55444 -     55575    147  ## ECIAI1_0070 hypothetical protein
    48    19 Op  2     .       +    CDS      55553 -     55804     60  ## 
    49    19 Op  3     .       +    CDS      55695 -     56855    834  ## COG0477 Permeases of the major facilitator superfamily
                               -    Term     56865 -     56896    4.8 
    50    20 Op  1  30/0.000   -    CDS      56904 -     57509    869  ## COG0066 3-isopropylmalate dehydratase small subunit
    51    20 Op  2  10/0.000   -    CDS      57520 -     58920   1671  ## COG0065 3-isopropylmalate dehydratase large subunit
    52    20 Op  3  11/0.000   -    CDS      58923 -     60014   1211  ## COG0473 Isocitrate/isopropylmalate dehydrogenase
    53    20 Op  4     .       -    CDS      60014 -     61585   1797  ## COG0119 Isopropylmalate/homocitrate/citramalate synthases
    54    21 Tu  1     .       +    CDS      62407 -     63369    823  ## COG0583 Transcriptional regulator
                               +    Term     63372 -     63430   16.1 
                               +    Prom     63412 -     63471    9.5 
    55    22 Op  1  32/0.000   +    CDS      63687 -     65411   1416  ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
    56    22 Op  2   3/0.727   +    CDS      65414 -     65905    509  ## COG0440 Acetolactate synthase, small (regulatory) subunit
                               +    Term     65931 -     65963    1.5 
                               +    Prom     65997 -     66056    5.7 
    57    23 Tu  1     .       +    CDS      66085 -     67089   1112  ## COG1609 Transcriptional regulators
                               +    Prom     67587 -     67646    4.1 
    58    24 Op  1  29/0.000   +    CDS      67691 -     68149    276  ## COG2001 Uncharacterized protein conserved in bacteria
    59    24 Op  2  12/0.000   +    CDS      68154 -     69092   1132  ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
    60    24 Op  3  12/0.000   +    CDS      69089 -     69454    358  ## COG3116 Cell division protein
    61    24 Op  4  26/0.000   +    CDS      69470 -     71236   1630  ## COG0768 Cell division protein FtsI/penicillin-binding protein 2
    62    24 Op  5  26/0.000   +    CDS      71223 -     72710   1539  ## COG0769 UDP-N-acetylmuramyl tripeptide synthase
    63    24 Op  6  28/0.000   +    CDS      72707 -     74065   1318  ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase
    64    24 Op  7  28/0.000   +    CDS      74059 -     75141   1455  ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
    65    24 Op  8  25/0.000   +    CDS      75144 -     76460   1436  ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase
    66    24 Op  9  31/0.000   +    CDS      76460 -     77704   1491  ## COG0772 Bacterial cell division membrane protein
    67    24 Op 10  26/0.000   +    CDS      77701 -     78768    980  ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
    68    24 Op 11  11/0.000   +    CDS      78822 -     80297   1535  ## COG0773 UDP-N-acetylmuramate-alanine ligase
    69    24 Op 12  18/0.000   +    CDS      80290 -     81210   1029  ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes
    70    24 Op 13  25/0.000   +    CDS      81212 -     82042    688  ## COG1589 Cell division septal protein
    71    24 Op 14  35/0.000   +    CDS      82039 -     83301   1139  ## COG0849 Actin-like ATPase involved in cell division
    72    24 Op 15  11/0.000   +    CDS      83362 -     84513   1358  ## COG0206 Cell division GTPase
                               +    Prom     84524 -     84583    1.8 
    73    24 Op 16     .       +    CDS      84614 -     85531    778  ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase
                               +    Term     85558 -     85615    2.1 
                               +    Prom     85579 -     85638    4.9 
    74    25 Op  1     .       +    CDS      85687 -     86274    299  ## G2583_0101 secretion monitor protein
                               +    Term     86305 -     86333    0.5 
    75    25 Op  2   8/0.000   +    CDS      86336 -     89041   3666  ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase)
                               +    Term     89063 -     89093    3.0 
    76    25 Op  3     .       +    CDS      89101 -     89490    337  ## PROTEIN SUPPORTED gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes
                               -    Term     89638 -     89682    3.7 
    77    26 Op  1   7/0.000   -    CDS      89706 -     89903    153  ## COG3024 Uncharacterized protein conserved in bacteria
    78    26 Op  2   7/0.000   -    CDS      89913 -     90656    821  ## COG4582 Uncharacterized protein conserved in bacteria
    79    26 Op  3     .       -    CDS      90656 -     91276    603  ## COG0237 Dephospho-CoA kinase
                               -    Prom     91378 -     91437    4.8 
                               +    Prom     91234 -     91293    3.0 
    80    27 Tu  1     .       +    CDS      91501 -     92544   1054  ## COG0516 IMP dehydrogenase/GMP reductase
                               +    Term     92553 -     92590    7.7 
    81    28 Op  1  24/0.000   -    CDS      92579 -     93781    946  ## COG1459 Type II secretory pathway, component PulF
    82    28 Op  2   8/0.000   -    CDS      93771 -     95156    755  ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
    83    28 Op  3   5/0.318   -    CDS      95166 -     95606    463  ## COG4969 Tfp pilus assembly protein, major pilin PilA
                               -    Prom     95715 -     95774    3.6 
    84    29 Tu  1     .       -    CDS      95809 -     96702    460  ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6
                               -    Prom     96723 -     96782    2.0 
                               +    Prom     96520 -     96579    2.0 
    85    30 Op  1   6/0.091   +    CDS      96790 -     97341    496  ## COG3023 Negative regulator of beta-lactamase expression
    86    30 Op  2     .       +    CDS      97338 -     98192    876  ## COG3725 Membrane protein required for beta-lactamase induction
                               -    Term     98185 -     98230    2.5 
    87    31 Tu  1     .       -    CDS      98235 -     99605   1629  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               -    Prom     99697 -     99756    5.2 
                               +    Prom     99876 -     99935    7.4 
    88    32 Tu  1     .       +    CDS     100149 -    100913    721  ## COG2186 Transcriptional regulators
                               +    Term    100918 -    100957    2.8 
                               +    Prom    100938 -    100997    1.7 
    89    33 Op  1  13/0.000   +    CDS     101074 -    103737   3503  ## COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component
    90    33 Op  2  30/0.000   +    CDS     103752 -    105644   2173  ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
                               +    Term    105651 -    105684    5.2 
                               +    Prom    105715 -    105774    7.8 
    91    33 Op  3     .       +    CDS     105969 -    107393    682  ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1
                               +    Term    107417 -    107472    5.0 
                               -    Term    107382 -    107428    3.7 
    92    34 Tu  1     .       -    CDS     107464 -    109317    612  ## JW0113 hypothetical protein
                               -    Prom    109531 -    109590    4.4 
                               +    Prom    109506 -    109565    7.7 
    93    35 Tu  1     .       +    CDS     109672 -    112269   3144  ## COG1049 Aconitase B
                               +    Term    112305 -    112342    6.1 
                               +    Prom    112287 -    112346    6.4 
    94    36 Tu  1     .       +    CDS     112445 -    112807    499  ## COG3112 Uncharacterized protein conserved in bacteria
                               +    Term    112963 -    113001    2.2 
                               -    Term    112799 -    112840   10.2 
    95    37 Op  1   9/0.000   -    CDS     112845 -    113639    877  ## COG1586 S-adenosylmethionine decarboxylase
    96    37 Op  2     .       -    CDS     113655 -    114521    882  ## COG0421 Spermidine synthase
                               -    Prom    114560 -    114619    4.8 
                               -    Term    114568 -    114601    3.8 
    97    38 Tu  1     .       -    CDS     114627 -    114974    358  ## ECSE_0122 hypothetical protein
                               -    Prom    115116 -    115175    2.0 
                               +    Prom    115042 -    115101    4.8 
    98    39 Tu  1     .       +    CDS     115140 -    116690   1709  ## COG2132 Putative multicopper oxidases
                               -    Term    116743 -    116780    2.2 
    99    40 Tu  1     .       -    CDS     116892 -    119282   2578  ## COG4993 Glucose dehydrogenase
                               -    Prom    119319 -    119378    3.7 
                               +    Prom    119290 -    119349    6.4 
   100    41 Tu  1     .       +    CDS     119488 -    120024    868  ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase
                               +    Term    120033 -    120071    4.2 
   101    42 Tu  1     .       -    CDS     120065 -    120727    644  ## COG0288 Carbonic anhydrase
                               -    Prom    120823 -    120882    5.4 
                               +    Prom    120738 -    120797    4.2 
   102    43 Op  1  45/0.000   +    CDS     120836 -    121762    946  ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein
   103    43 Op  2   3/0.727   +    CDS     121759 -    122529    885  ## COG0842 ABC-type multidrug transport system, permease component
                               +    Term    122537 -    122576    6.6 
   104    44 Op  1   4/0.591   +    CDS     122634 -    123074    313  ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA
                               +    Term    123090 -    123125    1.1 
   105    44 Op  2     .       +    CDS     123138 -    124367    862  ## COG0726 Predicted xylanase/chitin deacetylase
                               +    Term    124381 -    124418    2.1 
   106    45 Tu  1     .       -    CDS     124371 -    124751    434  ## COG0853 Aspartate 1-decarboxylase
                               -    Prom    124811 -    124870    2.6 
   107    46 Tu  1     .       +    CDS     124701 -    124913     97  ## ECH74115_0140 hypothetical protein
   108    47 Tu  1     .       +    CDS     125025 -    125927    683  ## COG5464 Uncharacterized conserved protein
                               +    Term    125929 -    125973    2.1 
                               -    Term    125954 -    125996   10.2 
   109    48 Op  1  19/0.000   -    CDS     126001 -    126852   1007  ## COG0414 Panthothenate synthetase
   110    48 Op  2   3/0.727   -    CDS     126864 -    127538    884  ## COG0413 Ketopantoate hydroxymethyltransferase
                               -    Prom    127685 -    127744    4.2 
   111    49 Tu  1     .       -    CDS     127771 -    128697    364  ## COG3539 P pilus assembly protein, pilin FimA
   112    50 Op  1     .       -    CDS     129059 -    129655    139  ## JW0132 predicted fimbrial-like adhesin protein
   113    50 Op  2     .       -    CDS     129682 -    130284    428  ## JW0133 predicted fimbrial-like adhesin protein
   114    50 Op  3   6/0.091   -    CDS     130299 -    130682    275  ## COG3539 P pilus assembly protein, pilin FimA
                               -    Prom    130740 -    130799    3.2 
   115    51 Op  1  10/0.000   -    CDS     130885 -    133482   1492  ## COG3188 P pilus assembly protein, porin PapC
   116    51 Op  2   7/0.000   -    CDS     133517 -    134209    454  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom    134246 -    134305    7.2 
                               -    Term    134274 -    134321    5.4 
   117    51 Op  3   3/0.727   -    CDS     134355 -    134939    465  ## COG3539 P pilus assembly protein, pilin FimA
                               -    Prom    135142 -    135201    5.4 
                               -    Term    135090 -    135135    1.0 
   118    52 Op  1   7/0.000   -    CDS     135309 -    135788    208  ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13
   119    52 Op  2   1/0.909   -    CDS     135785 -    137149   1377  ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase
                               -    Prom    137174 -    137233    3.5 
   120    53 Op  1   3/0.727   -    CDS     137242 -    138138    519  ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases
                               -    Term    138144 -    138176    3.0 
   121    53 Op  2   6/0.091   -    CDS     138205 -    138660    677  ## COG1734 DnaK suppressor protein
                               -    Prom    138714 -    138773    2.3 
                               -    Term    138738 -    138773   -0.1 
   122    54 Op  1   3/0.727   -    CDS     138838 -    139542    367  ## COG1489 DNA-binding protein, stimulates sugar fermentation
   123    54 Op  2     .       -    CDS     139557 -    140087    470  ## COG1514 2'-5' RNA ligase
                               -    Prom    140109 -    140168    4.3 
   124    55 Tu  1     .       +    CDS     140116 -    142590   2155  ## COG1643 HrpA-like helicases
Predicted protein(s)
>gi|223713515|gb|ACDM01000083.1| GENE     1       251  -       514    422     87 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15799705|ref|NP_285717.1| 30S ribosomal protein S20 [Escherichia coli O157:H7 EDL933] # 1      87       1      87      87 167  98 3e-40
MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR
QAAKGLIHKNKAARHKANLTAQINKLA
>gi|223713515|gb|ACDM01000083.1| GENE     2       617  -       835     76     72 aa, chain + ## HITS:1  COG:no KEGG:SDY_0046 NR:ns ## KEGG: SDY_0046 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1      72       1      72      72     128  100.0  7e-29
MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICAMAMKSHFFLISVLNRRLTLT
AVQGILGRFSLF
>gi|223713515|gb|ACDM01000083.1| GENE     3       843  -      1784    388    313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1     307       1     312     317 154  33 3e-36
MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPL
ELFATDKTPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKF
LAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLAL
AESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGV
ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIAHDE
LTAREFFGLTKPA
>gi|223713515|gb|ACDM01000083.1| GENE     4      1827  -      4643   3126    938 aa, chain + ## HITS:1  COG:ileS KEGG:ns NR:ns ## COG: ileS COG0060 # Protein_GI_number: 16128020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     938       1     938     938    1954   99.0  0
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA
NGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAA
EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK
GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFGVSNVNGPISLVIW
TTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAE
LELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPD
GTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ
WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK
DTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGST
HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG
RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR
FLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCS
VEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPG
EREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV
TLYAEPELSAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEK
CPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA
>gi|223713515|gb|ACDM01000083.1| GENE     5      4643  -      5137    566    164 aa, chain + ## HITS:1  COG:lspA KEGG:ns NR:ns ## COG: lspA COG0597 # Protein_GI_number: 16128021 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Escherichia coli K12 # 1     164       1     164     164     305   99.0  2e-83
MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSF
LADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF
VVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ
>gi|223713515|gb|ACDM01000083.1| GENE     6      5262  -      5711    257    149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225086978|ref|YP_002658248.1| ribosomal protein S2 [gamma proteobacterium NOR5-3] # 1     144       1     143     148 103  36 5e-21
MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK
TTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS
ITVDFNHPLAGQTVHFDIEVLEIDPALEA
>gi|223713515|gb|ACDM01000083.1| GENE     7      5713  -      6663    439    316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Veillonella parvula DSM 2008] # 1     298       1     287     632 173  34 4e-42
MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI
SEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG
HAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDA
LRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGK
RAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENI
VFEVPKELRVDIREVD
>gi|223713515|gb|ACDM01000083.1| GENE     8      6729  -      7643    731    304 aa, chain + ## HITS:1  COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1     303       1     303     304     575   98.0  1e-164
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEI
PLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPIGIPAFLAIRDALMRAPEPVTL
VAIGPLTNIALLLSQCPECKPYIRRLVIMGGSSGRGNCTPNAEFNIAADPEAAACVFRSG
IEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAW
LVRPDLFTLKPCFVAVETQGEFTSGTTMVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL
ALAP
>gi|223713515|gb|ACDM01000083.1| GENE     9      7810  -      8631    923    273 aa, chain + ## HITS:1  COG:dapB KEGG:ns NR:ns ## COG: dapB COG0289 # Protein_GI_number: 16128025 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Escherichia coli K12 # 1     273       1     273     273     468   99.0  1e-132
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV
TVQSSLDAVKEDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD
IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAH
ALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR
MTFANGAVRSALWLSGKESGLFDMRDVLDLNSL
>gi|223713515|gb|ACDM01000083.1| GENE    10      9192  -     10235   1030    347 aa, chain + ## HITS:1  COG:ECs0035 KEGG:ns NR:ns ## COG: ECs0035 COG0505 # Protein_GI_number: 15829289 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Escherichia coli O157:H7 # 1     347      36     382     382     715   99.0  0
MTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNT
EDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNG
MDLAKEVTTAEAYSWTQGSWTLTGGMPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCR
LTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLL
ALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDG
TLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>gi|223713515|gb|ACDM01000083.1| GENE    11     10253  -     13474   4323   1073 aa, chain + ## HITS:1  COG:ECs0036 KEGG:ns NR:ns ## COG: ECs0036 COG0458 # Protein_GI_number: 15829290 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Escherichia coli O157:H7 # 1    1073       1    1073    1073    2125  100.0  0
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA
DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG
IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM
GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP
RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA
LTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG
ITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT
AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN
CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP
VIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL
GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME
HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI
EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF
PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL
AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR
RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>gi|223713515|gb|ACDM01000083.1| GENE    12     13522  -     13701    125     59 aa, chain - ## HITS:1  COG:no KEGG:ECUMN_0035 NR:ns ## KEGG: ECUMN_0035 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      51       1      51      72      99  100.0  2e-20
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKTVLIREPY
>gi|223713515|gb|ACDM01000083.1| GENE    13     13736  -     14131    314    131 aa, chain + ## HITS:1  COG:no KEGG:SFV_0028 NR:ns ## KEGG: SFV_0028 # Name: caiF # Def: DNA-binding transcriptional activator CaiF # Organism: S.flexneri_8401 # Pathway: not_defined # 1     131      36     166     166     249  100.0  3e-65
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK
MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK
WQMMLSKSMRR
>gi|223713515|gb|ACDM01000083.1| GENE    14     14340  -     14930    440    196 aa, chain - ## HITS:1  COG:ECs0038 KEGG:ns NR:ns ## COG: ECs0038 COG0663 # Protein_GI_number: 15829292 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli O157:H7 # 1     196       8     203     203     389   98.0  1e-108
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQD
GCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSF
VKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQME
ENRPRLQGTTDVTPKR
>gi|223713515|gb|ACDM01000083.1| GENE    15     14936  -     15829   1052    297 aa, chain - ## HITS:1  COG:caiD KEGG:ns NR:ns ## COG: caiD COG1024 # Protein_GI_number: 16128030 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1     297       1     297     297     582   98.0  1e-166
MKQQGTTLPANNHAIKQYAFFAGMLSSLKKQKWRKGMSESLHLTRNGSILEITLDRPKAN
AIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF
AGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVL
RLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAI
AALKEIFRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>gi|223713515|gb|ACDM01000083.1| GENE    16     15830  -     17383   1215    517 aa, chain - ## HITS:1  COG:ECs0040 KEGG:ns NR:ns ## COG: ECs0040 COG0318 # Protein_GI_number: 15829294 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli O157:H7 # 1     517       6     522     522    1085   98.0  0
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIR
KGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFY
PMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILF
TSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG
ATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLS
EQEKDAFCERFGVRLLTSYGMTETIVGIIGNRPGDKRRWPSIGRAGFCYEAEIRDDHNRP
LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRR
CNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEF
FRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>gi|223713515|gb|ACDM01000083.1| GENE    17     17457  -     18674   1420    405 aa, chain - ## HITS:1  COG:ECs0041 KEGG:ns NR:ns ## COG: ECs0041 COG1804 # Protein_GI_number: 15829295 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli O157:H7 # 1     405       1     405     405     832   99.0  0
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ
LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI
AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAA
LAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYK
CADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWL
AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF
KNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>gi|223713515|gb|ACDM01000083.1| GENE    18     18803  -     19945   1412    380 aa, chain - ## HITS:1  COG:ECs0042 KEGG:ns NR:ns ## COG: ECs0042 COG1960 # Protein_GI_number: 15829296 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1     380       1     380     380     788  100.0  0
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH
GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMW
NSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY
TEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE
RFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEA
AWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVS
GGSDEMQILTLGRAVLKQYR
>gi|223713515|gb|ACDM01000083.1| GENE    19     19976  -     21490   1662    504 aa, chain - ## HITS:1  COG:caiT KEGG:ns NR:ns ## COG: caiT COG1292 # Protein_GI_number: 16128034 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli K12 # 1     504       1     504     504     934   99.0  0
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV
VMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP
FGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVG
EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI
ILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRM
LFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTW
ILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATV
TLVNACSYTLAMSTCRDVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG
CPLFFVNIMVTLSFIKDAKQNWKD
>gi|223713515|gb|ACDM01000083.1| GENE    20     21928  -     22734    864    268 aa, chain + ## HITS:1  COG:ECs0044 KEGG:ns NR:ns ## COG: ECs0044 COG2086 # Protein_GI_number: 15829298 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli O157:H7 # 1     268       1     268     268     448  100.0  1e-126
MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQL
KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAA
QKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETE
TLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPK
QRERQRIVIEGDGEEQIAAFAENLRKVI
>gi|223713515|gb|ACDM01000083.1| GENE    21     22749  -     23690    898    313 aa, chain + ## HITS:1  COG:fixB KEGG:ns NR:ns ## COG: fixB COG2025 # Protein_GI_number: 16128036 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1     313       1     313     313     602  100.0  1e-172
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPD
DRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGK
ATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRT
ATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDA
VKILPALTAALAR
>gi|223713515|gb|ACDM01000083.1| GENE    22     23741  -     25027   1425    428 aa, chain + ## HITS:1  COG:fixC KEGG:ns NR:ns ## COG: fixC COG0644 # Protein_GI_number: 16128037 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1     428       1     428     428     813   99.0  0
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP
GFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE
AGVQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTD
VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG
LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA
GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDM
RMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKD
GMKGVTVL
>gi|223713515|gb|ACDM01000083.1| GENE    23     25024  -     25311    344     95 aa, chain + ## HITS:1  COG:ECs0047 KEGG:ns NR:ns ## COG: ECs0047 COG2440 # Protein_GI_number: 15829301 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli O157:H7 # 1      95       1      95      95     197   98.0  3e-51
MTSPVNVDVKLGVNKFNVDEGHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY
AGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>gi|223713515|gb|ACDM01000083.1| GENE    24     25370  -     26701   1474    443 aa, chain + ## HITS:1  COG:yaaU KEGG:ns NR:ns ## COG: yaaU COG0477 # Protein_GI_number: 16128039 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     443       1     443     443     834  100.0  0
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGA
GTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVI
GADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAA
IPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRR
HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPM
LWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPN
ELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAF
APETRGMSLAQTSNMTIRGQRMG
>gi|223713515|gb|ACDM01000083.1| GENE    25     26866  -     27339    505    157 aa, chain + ## HITS:1  COG:yabF KEGG:ns NR:ns ## COG: yabF COG2249 # Protein_GI_number: 16128040 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli K12 # 1     157      20     176     176     305   98.0  2e-83
MLEQARTLEGVEIRSLYQLYPDFNIDIAAEHEALSRADLIVWQHPMQWYSIPPLLKLWID
KVLSHGWAYGHGGKALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNW
LPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>gi|223713515|gb|ACDM01000083.1| GENE    26     27332  -     29194   1031    620 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 6     586       9     612     618 401  38 1e-111
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE
IGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGM
TLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGA
FALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLS
MAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILL
LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGTAQMANVLEPEWAKSL
TLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLS
SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL
TEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEA
RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG
TEEGKHTGNMADEPETKPSS
>gi|223713515|gb|ACDM01000083.1| GENE    27     29386  -     29865    653    159 aa, chain + ## HITS:1  COG:folA KEGG:ns NR:ns ## COG: folA COG0262 # Protein_GI_number: 16128042 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Escherichia coli K12 # 1     159       1     159     159     332  100.0  1e-91
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNI
ILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE
GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>gi|223713515|gb|ACDM01000083.1| GENE    28     29943  -     30785    847    280 aa, chain - ## HITS:1  COG:apaH KEGG:ns NR:ns ## COG: apaH COG0639 # Protein_GI_number: 16128043 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1     280       1     280     280     587  100.0  1e-167
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR
LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH
AGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAF
TRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGI
YALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>gi|223713515|gb|ACDM01000083.1| GENE    29     30792  -     31169    327    125 aa, chain - ## HITS:1  COG:ECs0055 KEGG:ns NR:ns ## COG: ECs0055 COG2967 # Protein_GI_number: 15829309 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein affecting Mg2+/Co2+ transport # Organism: Escherichia coli O157:H7 # 1     125       1     125     125     241  100.0  2e-64
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRET
EVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAV
PTLIH
>gi|223713515|gb|ACDM01000083.1| GENE    30     31172  -     31993    748    273 aa, chain - ## HITS:1  COG:ksgA KEGG:ns NR:ns ## COG: ksgA COG0030 # Protein_GI_number: 16128045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Escherichia coli K12 # 1     273       1     273     273     538  100.0  1e-153
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD
QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST
PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA
FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG
MGIDPAMRAENISVAQYCQMANYLAENAPLQES
>gi|223713515|gb|ACDM01000083.1| GENE    31     31990  -     32979    461    329 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 7     324       9     326     346 182  34 1e-44
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYS
PNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGP
VHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPAL
LHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKL
NGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA
LELAGRGEADVGSFITALNLAIKMIVNTQ
>gi|223713515|gb|ACDM01000083.1| GENE    32     32979  -     34265   1402    428 aa, chain - ## HITS:1  COG:ECs0058 KEGG:ns NR:ns ## COG: ECs0058 COG0760 # Protein_GI_number: 15829312 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli O157:H7 # 1     428       1     428     428     773  100.0  0
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL
PDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAY
DGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHIL
IPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP
GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTD
EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL
NKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRAS
AYVKILSN
>gi|223713515|gb|ACDM01000083.1| GENE    33     34318  -     36672   2119    784 aa, chain - ## HITS:1  COG:imp KEGG:ns NR:ns ## COG: imp COG1452 # Protein_GI_number: 16128048 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Escherichia coli K12 # 1     784       1     784     784    1553   99.0  0
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAK
GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILK
GPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTW
SVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNY
FEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYED
EHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFS
VGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNT
RDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNR
VMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGL
FRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWEND
DKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYAS
PEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQ
YSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPY
QNTL
>gi|223713515|gb|ACDM01000083.1| GENE    34     36927  -     37742    799    271 aa, chain + ## HITS:1  COG:STM0094 KEGG:ns NR:ns ## COG: STM0094 COG1076 # Protein_GI_number: 16763484 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Salmonella typhimurium LT2 # 1     271       1     270     270     504   95.0  1e-143
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFE
VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS
VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQ
FGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK
GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>gi|223713515|gb|ACDM01000083.1| GENE    35     37859  -     38518    218    219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 16     218      83     281     285 88  31 2e-16
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>gi|223713515|gb|ACDM01000083.1| GENE    36     38530  -     41436   3772    968 aa, chain - ## HITS:1  COG:ECs0063 KEGG:ns NR:ns ## COG: ECs0063 COG0553 # Protein_GI_number: 15829317 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Escherichia coli O157:H7 # 1     968       1     968     968    1915  100.0  0
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
>gi|223713515|gb|ACDM01000083.1| GENE    37     41601  -     43952   1810    783 aa, chain - ## HITS:1  COG:polB KEGG:ns NR:ns ## COG: polB COG0417 # Protein_GI_number: 16128054 # Func_class: L Replication, recombination and repair # Function: DNA polymerase elongation subunit (family B) # Organism: Escherichia coli K12 # 1     783       1     783     783    1624   99.0  0
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGE
QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI
TSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM
LGPENGDASSLDFELEYVASRPLLLEKLNAWFANHDPDVIIGWNVVQFDLRMLQKHAERY
RLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL
LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG
LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY
KSLYPSIIRTFLIDPVGLVEGMAQPDPEPSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA
KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYD
VIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCR
FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE
PYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL
QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL
GLF
>gi|223713515|gb|ACDM01000083.1| GENE    38     44027  -     44722    636    231 aa, chain - ## HITS:1  COG:araD KEGG:ns NR:ns ## COG: araD COG0235 # Protein_GI_number: 16128055 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     231       1     231     231     474  100.0  1e-134
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVS
IETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD
YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA
EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>gi|223713515|gb|ACDM01000083.1| GENE    39     44891  -     46393   1598    500 aa, chain - ## HITS:1  COG:araA KEGG:ns NR:ns ## COG: araA COG2160 # Protein_GI_number: 16128056 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Escherichia coli K12 # 1     500       1     500     500    1058   99.0  0
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI
TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF
MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR
FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT
PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG
YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV
EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP
KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT
RLPAFKDALRWNEVYYGFRR
>gi|223713515|gb|ACDM01000083.1| GENE    40     46404  -     48104   1711    566 aa, chain - ## HITS:1  COG:ECs0067 KEGG:ns NR:ns ## COG: ECs0067 COG1069 # Protein_GI_number: 15829321 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Escherichia coli O157:H7 # 1     566       1     566     566    1100   99.0  0
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK
DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH
PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA
TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
QIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQ
QWAMSAEQHYLPTSAPAQAAQAVATL
>gi|223713515|gb|ACDM01000083.1| GENE    41     48392  -     49321    615    309 aa, chain + ## HITS:1  COG:ECs0068 KEGG:ns NR:ns ## COG: ECs0068 COG2207 # Protein_GI_number: 15829322 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 18     309       1     292     292     622  100.0  1e-178
MQYGQLVSSLNGGSMKSMAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMK
GYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAY
WHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRR
MEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV
LSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEK
VNDVAVKLS
>gi|223713515|gb|ACDM01000083.1| GENE    42     49407  -     50171    901    254 aa, chain + ## HITS:1  COG:ECs0069 KEGG:ns NR:ns ## COG: ECs0069 COG0586 # Protein_GI_number: 15829323 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli O157:H7 # 1     254       1     254     254     446   99.0  1e-125
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAW
LAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG
PTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWL
LLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPL
MPVYIDILRKVVGV
>gi|223713515|gb|ACDM01000083.1| GENE    43     50285  -     50983    186    232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 22     227     154     361     398 76  30 8e-13
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDS
VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGID
NLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK
MTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELLSGKASASAILGITG
>gi|223713515|gb|ACDM01000083.1| GENE    44     50967  -     52577   1644    536 aa, chain - ## HITS:1  COG:ECs0071 KEGG:ns NR:ns ## COG: ECs0071 COG1178 # Protein_GI_number: 15829325 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Escherichia coli O157:H7 # 1     536       1     536     536     888   98.0  0
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSF
WQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGW
LASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRG
WHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDP
ARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALL
LLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELR
ARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTTGLPQSADGIVIFTNALMAIPYA
LKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVV
ALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKIPGRNVKTD
>gi|223713515|gb|ACDM01000083.1| GENE    45     52553  -     53536   1025    327 aa, chain - ## HITS:1  COG:tbpA KEGG:ns NR:ns ## COG: tbpA COG4143 # Protein_GI_number: 16128062 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type thiamine transport system, periplasmic component # Organism: Escherichia coli K12 # 13     327      13     327     327     614   98.0  1e-176
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDG
VSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPF
DYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAP
QAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGH
YLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVAKVTLPAGFEQLTKPA
TTLEFTPAEVAAQRQAWISEWQRAVSR
>gi|223713515|gb|ACDM01000083.1| GENE    46     53700  -     55355   1356    551 aa, chain - ## HITS:1  COG:ECs0074 KEGG:ns NR:ns ## COG: ECs0074 COG4533 # Protein_GI_number: 15829328 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     551       1     551     552    1108   99.0  0
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG
RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH
ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW
RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP
LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN
VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHCGANKQVRDWVSYVL
SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAG
IMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHC
IPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFD
FKSAWFAPPDP
>gi|223713515|gb|ACDM01000083.1| GENE    47     55444  -     55575    147     43 aa, chain + ## HITS:1  COG:no KEGG:ECIAI1_0070 NR:ns ## KEGG: ECIAI1_0070 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      43      57      99      99      84   97.0  1e-15
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>gi|223713515|gb|ACDM01000083.1| GENE    48     55553  -     55804     60     83 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MTAILKVDLPASCVTEYWCKITRQQIIPAGFFYSRRAKKGTYDLDNDDGSPYERCLRGIY
AGRFYDGGGRGATGSYIELISES
>gi|223713515|gb|ACDM01000083.1| GENE    49     55695  -     56855    834    386 aa, chain + ## HITS:1  COG:setA KEGG:ns NR:ns ## COG: setA COG0477 # Protein_GI_number: 16128064 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     386       7     392     392     656   99.0  0
MARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVS
LWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFA
LAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLV
LIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSEL
GLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMA
LMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
GHFAVYWVIAVISVVALFLTAKVKDV
>gi|223713515|gb|ACDM01000083.1| GENE    50     56904  -     57509    869    201 aa, chain - ## HITS:1  COG:leuD KEGG:ns NR:ns ## COG: leuD COG0066 # Protein_GI_number: 16128065 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Escherichia coli K12 # 1     201       1     201     201     413  100.0  1e-115
MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPD
FVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL
PVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIG
LTLQHDDAIAAYEAKQPAFMN
>gi|223713515|gb|ACDM01000083.1| GENE    51     57520  -     58920   1671    466 aa, chain - ## HITS:1  COG:leuC KEGG:ns NR:ns ## COG: leuC COG0065 # Protein_GI_number: 16128066 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Escherichia coli K12 # 1     466       1     466     466     926   99.0  0
MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT
MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP
GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA
KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF
NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV
NDNIPDPTSFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE
IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP
GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNIK
>gi|223713515|gb|ACDM01000083.1| GENE    52     58923  -     60014   1211    363 aa, chain - ## HITS:1  COG:leuB KEGG:ns NR:ns ## COG: leuB COG0473 # Protein_GI_number: 16128067 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1     363       2     364     364     742  100.0  0
MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPA
TVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAF
CPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAF
ESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQF
DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIA
QILSLALLLRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYVA
EGV
>gi|223713515|gb|ACDM01000083.1| GENE    53     60014  -     61585   1797    523 aa, chain - ## HITS:1  COG:ECs0078 KEGG:ns NR:ns ## COG: ECs0078 COG0119 # Protein_GI_number: 15829332 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli O157:H7 # 1     523       1     523     523    1013   99.0  0
MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT
IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE
RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEF
AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS
LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH
QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF
LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA
EAANGNGPVDAVYQAINRITDYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL
ATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQHNENNKETV
>gi|223713515|gb|ACDM01000083.1| GENE    54     62407  -     63369    823    320 aa, chain + ## HITS:1  COG:leuO KEGG:ns NR:ns ## COG: leuO COG0583 # Protein_GI_number: 16128070 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     320      54     373     373     628   99.0  1e-180
MTVELSMPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVS
NAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVF
HLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP
EFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQA
SIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSWHEA
AGRDKGHQWMEEQLVSICKR
>gi|223713515|gb|ACDM01000083.1| GENE    55     63687  -     65411   1416    574 aa, chain + ## HITS:1  COG:ilvI KEGG:ns NR:ns ## COG: ilvI COG0028 # Protein_GI_number: 16132273 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1     574       1     574     574    1167   99.0  0
MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG
LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG
ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV
SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVSS
LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV
LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR
QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL
GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM
VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL
VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT
>gi|223713515|gb|ACDM01000083.1| GENE    56     65414  -     65905    509    163 aa, chain + ## HITS:1  COG:ECs0082 KEGG:ns NR:ns ## COG: ECs0082 COG0440 # Protein_GI_number: 15829336 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1     163       1     163     163     280   98.0  1e-75
MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI
EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY
TVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDKIMR
>gi|223713515|gb|ACDM01000083.1| GENE    57     66085  -     67089   1112    334 aa, chain + ## HITS:1  COG:ECs0084 KEGG:ns NR:ns ## COG: ECs0084 COG1609 # Protein_GI_number: 15829338 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     334       1     334     334     655  100.0  0
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR
TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA
IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE
TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ
ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
>gi|223713515|gb|ACDM01000083.1| GENE    58     67691  -     68149    276    152 aa, chain + ## HITS:1  COG:ECs0085 KEGG:ns NR:ns ## COG: ECs0085 COG2001 # Protein_GI_number: 15829339 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     152       1     152     152     296  100.0  7e-81
MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPCLLLYPLPEWEIIEQKL
SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW
DETTWHQQVKEDIDAEQLATGDLSERLQDLSL
>gi|223713515|gb|ACDM01000083.1| GENE    59     68154  -     69092   1132    312 aa, chain + ## HITS:1  COG:ECs0086 KEGG:ns NR:ns ## COG: ECs0086 COG0275 # Protein_GI_number: 15829340 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Escherichia coli O157:H7 # 1     312       2     313     313     593  100.0  1e-169
MENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI
AVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRD
GPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTK
ELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF
HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRAR
SSVLRIAERTNA
>gi|223713515|gb|ACDM01000083.1| GENE    60     69089  -     69454    358    121 aa, chain + ## HITS:1  COG:ECs0087 KEGG:ns NR:ns ## COG: ECs0087 COG3116 # Protein_GI_number: 15829341 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli O157:H7 # 1     121       1     121     121     224  100.0  4e-59
MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFICIILTAVTVVTTAHHT
RLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ
K
>gi|223713515|gb|ACDM01000083.1| GENE    61     69470  -     71236   1630    588 aa, chain + ## HITS:1  COG:ECs0088 KEGG:ns NR:ns ## COG: ECs0088 COG0768 # Protein_GI_number: 15829342 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Escherichia coli O157:H7 # 1     588       1     588     588    1162  100.0  0
MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR
SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP
LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG
FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL
QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT
DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS
NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG
LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG
GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY
YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS
>gi|223713515|gb|ACDM01000083.1| GENE    62     71223  -     72710   1539    495 aa, chain + ## HITS:1  COG:murE KEGG:ns NR:ns ## COG: murE COG0769 # Protein_GI_number: 16128078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Escherichia coli K12 # 1     495       1     495     495     937   99.0  0
MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV
AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK
TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC
AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN
ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE
SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH
TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE
PRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD
YSDRVTVARLLGVIA
>gi|223713515|gb|ACDM01000083.1| GENE    63     72707  -     74065   1318    452 aa, chain + ## HITS:1  COG:murF KEGG:ns NR:ns ## COG: murF COG0770 # Protein_GI_number: 16128079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Escherichia coli K12 # 1     452       1     452     452     816  100.0  0
MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAG
GAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAA
ILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAAL
VNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFS
PNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATL
DAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGD
MAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLL
IAEQQVITILVKGSRSAAMEEVVRALQENGTC
>gi|223713515|gb|ACDM01000083.1| GENE    64     74059  -     75141   1455    360 aa, chain + ## HITS:1  COG:STM0125 KEGG:ns NR:ns ## COG: STM0125 COG0472 # Protein_GI_number: 16763515 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Salmonella typhimurium LT2 # 1     360       1     360     360     642   97.0  0
MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRND
GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVVLVGYGVIGFVDDYRKV
VRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQLVVPFFKDVMPQLGLFYILLA
YFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELV
IVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLLRQEFLLVIMGGVFVVE
TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR
>gi|223713515|gb|ACDM01000083.1| GENE    65     75144  -     76460   1436    438 aa, chain + ## HITS:1  COG:ECs0092 KEGG:ns NR:ns ## COG: ECs0092 COG0771 # Protein_GI_number: 15829346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Escherichia coli O157:H7 # 1     438       1     438     438     853   99.0  0
MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND
EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT
TLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV
TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL
NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGL
PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYL
NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF
KNFEQRGNEFARLAKELG
>gi|223713515|gb|ACDM01000083.1| GENE    66     76460  -     77704   1491    414 aa, chain + ## HITS:1  COG:ECs0093 KEGG:ns NR:ns ## COG: ECs0093 COG0772 # Protein_GI_number: 15829347 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Escherichia coli O157:H7 # 1     414       1     414     414     735  100.0  0
MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGF
IMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRLPMEFWQRYSATMLLGSII
LLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLK
PMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAE
PYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIF
AIIGEELGYVGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV
GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR
>gi|223713515|gb|ACDM01000083.1| GENE    67     77701  -     78768    980    355 aa, chain + ## HITS:1  COG:murG KEGG:ns NR:ns ## COG: murG COG0707 # Protein_GI_number: 16128083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Escherichia coli K12 # 1     355       1     355     355     655  100.0  0
MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFI
RISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIP
VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGRE
GPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKV
TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA
AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA
>gi|223713515|gb|ACDM01000083.1| GENE    68     78822  -     80297   1535    491 aa, chain + ## HITS:1  COG:murC KEGG:ns NR:ns ## COG: murC COG0773 # Protein_GI_number: 16128084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Escherichia coli K12 # 1     491       1     491     491     908  100.0  0
MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQL
MNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRH
GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDA
SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL
PRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAA
VAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD
ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGA
DSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL
KPQTPEEEQHD
>gi|223713515|gb|ACDM01000083.1| GENE    69     80290  -     81210   1029    306 aa, chain + ## HITS:1  COG:ddlB KEGG:ns NR:ns ## COG: ddlB COG1181 # Protein_GI_number: 16128085 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli K12 # 1     306       1     306     306     581  100.0  1e-166
MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI
ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA
EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE
KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL
VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR
ILELAD
>gi|223713515|gb|ACDM01000083.1| GENE    70     81212  -     82042    688    276 aa, chain + ## HITS:1  COG:ftsQ KEGG:ns NR:ns ## COG: ftsQ COG1589 # Protein_GI_number: 16128086 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Escherichia coli K12 # 1     265       1     265     276     490  100.0  1e-138
MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKL
VLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELK
IHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQM
LAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKR
ISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
>gi|223713515|gb|ACDM01000083.1| GENE    71     82039  -     83301   1139    420 aa, chain + ## HITS:1  COG:ECs0098 KEGG:ns NR:ns ## COG: ECs0098 COG0849 # Protein_GI_number: 15829352 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Escherichia coli O157:H7 # 1     420       1     420     420     818  100.0  0
MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC
VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR
VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL
KVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT
SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR
YTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA
PLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF
>gi|223713515|gb|ACDM01000083.1| GENE    72     83362  -     84513   1358    383 aa, chain + ## HITS:1  COG:ECs0099 KEGG:ns NR:ns ## COG: ECs0099 COG0206 # Protein_GI_number: 15829353 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Escherichia coli O157:H7 # 1     383       1     383     383     642  100.0  0
MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI
GSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVA
KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD
AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA
EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP
DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND
NAPQTAKEPDYLDIPAFLRKQAD
>gi|223713515|gb|ACDM01000083.1| GENE    73     84614  -     85531    778    305 aa, chain + ## HITS:1  COG:ECs0100 KEGG:ns NR:ns ## COG: ECs0100 COG0774 # Protein_GI_number: 15829354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     636  100.0  0
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT
MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI
DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD
AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
SAVLA
>gi|223713515|gb|ACDM01000083.1| GENE    74     85687  -     86274    299    195 aa, chain + ## HITS:1  COG:no KEGG:G2583_0101 NR:ns ## KEGG: G2583_0101 # Name: secM # Def: secretion monitor protein # Organism: E.coli_O55_H7 # Pathway: Protein export [PATH:eok03060]; Bacterial secretion system [PATH:eok03070] # 1     195      33     227     227     384   98.0  1e-106
MLWTAGFNDKICALNTFEYDRDGNNVSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALS
NAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSF
AMAPQTLPVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVW
ISQAQGIRAGPQRLT
>gi|223713515|gb|ACDM01000083.1| GENE    75     86336  -     89041   3666    901 aa, chain + ## HITS:1  COG:secA KEGG:ns NR:ns ## COG: secA COG0653 # Protein_GI_number: 16128091 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Escherichia coli K12 # 1     901       1     901     901    1721  100.0  0
MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL
ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA
LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN
EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN
KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS
PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK
EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR
KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN
AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD
WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS
DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY
SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI
AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA
AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL
EQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRL
Q
>gi|223713515|gb|ACDM01000083.1| GENE    76     89101  -     89490    337    129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Haemophilus influenzae R2866] # 2     126       4     128     136 134  48 2e-30
MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI
TPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANE
PVIAKLKRL
>gi|223713515|gb|ACDM01000083.1| GENE    77     89706  -     89903    153     65 aa, chain - ## HITS:1  COG:ECs0105 KEGG:ns NR:ns ## COG: ECs0105 COG3024 # Protein_GI_number: 15829359 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      65       1      65      65     117  100.0  7e-27
MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS
EEPKQ
>gi|223713515|gb|ACDM01000083.1| GENE    78     89913  -     90656    821    247 aa, chain - ## HITS:1  COG:yacF KEGG:ns NR:ns ## COG: yacF COG4582 # Protein_GI_number: 16128095 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     247       1     247     247     484  100.0  1e-137
MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVR
TELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIAL
VRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIASLNPLTQALTMVLDLIRQSAP
FRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGHKSRFAIRFMPLDTENGQVPERL
DFELACC
>gi|223713515|gb|ACDM01000083.1| GENE    79     90656  -     91276    603    206 aa, chain - ## HITS:1  COG:ECs0107 KEGG:ns NR:ns ## COG: ECs0107 COG0237 # Protein_GI_number: 15829361 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Escherichia coli O157:H7 # 1     206       1     206     206     360  100.0  1e-100
MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA
ADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSL
YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPD
AIASDVARLHAHYLQLASQFVSQEKP
>gi|223713515|gb|ACDM01000083.1| GENE    80     91501  -     92544   1054    347 aa, chain + ## HITS:1  COG:guaC KEGG:ns NR:ns ## COG: guaC COG0516 # Protein_GI_number: 16128097 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Escherichia coli K12 # 1     347       1     347     347     697  100.0  0
MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTF
SMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILDLN
PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI
GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGCTTPGDVAKAFGGGADFVM
LGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGP
VENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRIFNNL
>gi|223713515|gb|ACDM01000083.1| GENE    81     92579  -     93781    946    400 aa, chain - ## HITS:1  COG:hofC KEGG:ns NR:ns ## COG: hofC COG1459 # Protein_GI_number: 16128099 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Escherichia coli K12 # 1     400       1     400     400     717  100.0  0
MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKS
AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV
FPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAM
LHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTW
LIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL
TQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALAD
NLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG
>gi|223713515|gb|ACDM01000083.1| GENE    82     93771  -     95156    755    461 aa, chain - ## HITS:1  COG:hofB KEGG:ns NR:ns ## COG: hofB COG2804 # Protein_GI_number: 16128100 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli K12 # 1     461       1     461     461     898  100.0  0
MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQME
GHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLH
PLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKV
VLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN
TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAE
IAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR
QQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVES
LETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE
>gi|223713515|gb|ACDM01000083.1| GENE    83     95166  -     95606    463    146 aa, chain - ## HITS:1  COG:ppdD KEGG:ns NR:ns ## COG: ppdD COG4969 # Protein_GI_number: 16128101 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, major pilin PilA # Organism: Escherichia coli K12 # 1     146       1     146     146     293  100.0  7e-80
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
GGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGW
TRNCNIQSDSALQQACEDVFRFDDAN
>gi|223713515|gb|ACDM01000083.1| GENE    84     95809  -     96702    460    297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 27     295      15     283     286 181  37 1e-44
MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATV
ITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQSLFELEGPSRVLLTGERT
ALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLS
DAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFET
EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR
>gi|223713515|gb|ACDM01000083.1| GENE    85     96790  -     97341    496    183 aa, chain + ## HITS:1  COG:ampD KEGG:ns NR:ns ## COG: ampD COG3023 # Protein_GI_number: 16128103 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Escherichia coli K12 # 1     183       1     183     183     384  100.0  1e-107
MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA
HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT
DTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSK
ETT
>gi|223713515|gb|ACDM01000083.1| GENE    86     97338  -     98192    876    284 aa, chain + ## HITS:1  COG:ampE KEGG:ns NR:ns ## COG: ampE COG3725 # Protein_GI_number: 16128104 # Func_class: V Defense mechanisms # Function: Membrane protein required for beta-lactamase induction # Organism: Escherichia coli K12 # 1     284       1     284     284     518  100.0  1e-147
MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA
LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP
AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT
PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA
QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV
>gi|223713515|gb|ACDM01000083.1| GENE    87     98235  -     99605   1629    456 aa, chain - ## HITS:1  COG:aroP KEGG:ns NR:ns ## COG: aroP COG1113 # Protein_GI_number: 16128105 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1     456       2     457     457     826  100.0  0
MEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFL
IMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW
YPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGG
PQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV
IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYN
SCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGL
LMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIML
MTPGMAISVYLIPVWLIVLGIGYLFKEKTAKAVKAH
>gi|223713515|gb|ACDM01000083.1| GENE    88    100149  -    100913    721    254 aa, chain + ## HITS:1  COG:ECs0117 KEGG:ns NR:ns ## COG: ECs0117 COG2186 # Protein_GI_number: 15829371 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     254       1     254     254     402  100.0  1e-112
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA
KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRST
DEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN
VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREES
RRERSLRRLEQRKN
>gi|223713515|gb|ACDM01000083.1| GENE    89    101074  -    103737   3503    887 aa, chain + ## HITS:1  COG:ECs0118 KEGG:ns NR:ns ## COG: ECs0118 COG2609 # Protein_GI_number: 15829372 # Func_class: C Energy production and conversion # Function: Pyruvate dehydrogenase complex, dehydrogenase (E1) component # Organism: Escherichia coli O157:H7 # 1     887       1     887     887    1837  100.0  0
MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNY
INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDV
CFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPH
PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK
GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD
ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL
NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRH
IRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQ
DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS
PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY
SMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD
PAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI
EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHP
LETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH
HFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA
>gi|223713515|gb|ACDM01000083.1| GENE    90    103752  -    105644   2173    630 aa, chain + ## HITS:1  COG:ECs0119 KEGG:ns NR:ns ## COG: ECs0119 COG0508 # Protein_GI_number: 15829373 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Escherichia coli O157:H7 # 1     630       1     630     630     945   99.0  0
MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS
VGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVNVPDIGSDEVEV
TEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVA
GEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT
VEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPA
AKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILRED
VQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNW
VMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSS
LSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTA
GEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLS
FDHRVIDGADGARFITIINNTLSDIRRLVM
>gi|223713515|gb|ACDM01000083.1| GENE    91    105969  -    107393    682    474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6     452       3     444     458 267  33 2e-70
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA
KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT
GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV
MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA
VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ
LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV
GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGE
LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK
>gi|223713515|gb|ACDM01000083.1| GENE    92    107464  -    109317    612    617 aa, chain - ## HITS:1  COG:no KEGG:JW0113 NR:ns ## KEGG: JW0113 # Name: yacH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     617       1     617     617    1018  100.0  0
MKMTLPFKPHVLALICSAGLCAASTGLYIKSRTVEAPVEPQSTQLAVSDAAAVTFPATVS
APPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQ
GDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQ
LAQQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSNTVLTANPVITEPATTVISIEPA
NPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFVDSFVRGFGYSMGVATTYALFSS
IDWDDDDHDHHHHDNDDYHHHDGGHRDGNGWQHNGDNINIDVNNFNRITGEHLTDKNMAW
RHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDSQRQAAANQFQQRTHAAPV
ITRDTQRQAAAQRFNEAEHYGSYDDFHDFSRRQPLTQQQKDAARQRYQSASPEQRQAVRE
RMQTNPKIQQRREAARERIQSASPEQRQAVREKMQTNPQNQQRRDAARERIQSASPEQRQ
VFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQR
SAVCERLSERGARRLER
>gi|223713515|gb|ACDM01000083.1| GENE    93    109672  -    112269   3144    865 aa, chain + ## HITS:1  COG:acnB KEGG:ns NR:ns ## COG: acnB COG1049 # Protein_GI_number: 16128111 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Escherichia coli K12 # 1     865       1     865     865    1705  100.0  0
MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA
AYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS
HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD
DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV
GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN
LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA
LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM
TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH
SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM
QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA
ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEA
DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA
GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA
DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT
YRYLNFNQLSQYTEKADGVIFQTAV
>gi|223713515|gb|ACDM01000083.1| GENE    94    112445  -    112807    499    120 aa, chain + ## HITS:1  COG:ECs0123 KEGG:ns NR:ns ## COG: ECs0123 COG3112 # Protein_GI_number: 15829377 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     120      17     136     136     217  100.0  3e-57
MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAG
HEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK
>gi|223713515|gb|ACDM01000083.1| GENE    95    112845  -    113639    877    264 aa, chain - ## HITS:1  COG:ECs0124 KEGG:ns NR:ns ## COG: ECs0124 COG1586 # Protein_GI_number: 15829378 # Func_class: E Amino acid transport and metabolism # Function: S-adenosylmethionine decarboxylase # Organism: Escherichia coli O157:H7 # 1     264       1     264     264     537  100.0  1e-153
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIG
ANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYP
ESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHF
IDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSE
RQEITAALWKEMREIYYGRNMPAV
>gi|223713515|gb|ACDM01000083.1| GENE    96    113655  -    114521    882    288 aa, chain - ## HITS:1  COG:speE KEGG:ns NR:ns ## COG: speE COG0421 # Protein_GI_number: 16128114 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Escherichia coli K12 # 1     288       1     288     288     602  100.0  1e-172
MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE
FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY
LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR
CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND
ALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS
>gi|223713515|gb|ACDM01000083.1| GENE    97    114627  -    114974    358    115 aa, chain - ## HITS:1  COG:no KEGG:ECSE_0122 NR:ns ## KEGG: ECSE_0122 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1     115      42     156     156     231  100.0  8e-60
MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALV
FFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK
>gi|223713515|gb|ACDM01000083.1| GENE    98    115140  -    116690   1709    516 aa, chain + ## HITS:1  COG:yacK KEGG:ns NR:ns ## COG: yacK COG2132 # Protein_GI_number: 16128116 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli K12 # 1     516       1     516     516    1051  100.0  0
MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG
GKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIP
PGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD
VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN
ARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPV
SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLD
MMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKP
MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS
EVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV
>gi|223713515|gb|ACDM01000083.1| GENE    99    116892  -    119282   2578    796 aa, chain - ## HITS:1  COG:gcd KEGG:ns NR:ns ## COG: gcd COG4993 # Protein_GI_number: 16128117 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose dehydrogenase # Organism: Escherichia coli K12 # 1     796       1     796     796    1527  100.0  0
MAINNTGSRRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS
KRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGA
VAALVVALLISGGILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF
SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD
AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI
AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE
TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM
GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV
NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT
KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN
REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF
GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAG
NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT
KMGDYIVAYALPDDVK
>gi|223713515|gb|ACDM01000083.1| GENE   100    119488  -    120024    868    178 aa, chain + ## HITS:1  COG:ECs0129 KEGG:ns NR:ns ## COG: ECs0129 COG0634 # Protein_GI_number: 15829383 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1     178       5     182     182     337  100.0  9e-93
MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSH
EVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP
KSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILLDE
>gi|223713515|gb|ACDM01000083.1| GENE   101    120065  -    120727    644    220 aa, chain - ## HITS:1  COG:yadF KEGG:ns NR:ns ## COG: yadF COG0288 # Protein_GI_number: 16128119 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli K12 # 1     220       1     220     220     457  100.0  1e-129
MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEL
FVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWL
LHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA
YGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK
>gi|223713515|gb|ACDM01000083.1| GENE   102    120836  -    121762    946    308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1     302       1     304     311 369  63 1e-101
MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG
RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY
LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK
DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKS
PLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLV
NEKQGDRA
>gi|223713515|gb|ACDM01000083.1| GENE   103    121759  -    122529    885    256 aa, chain + ## HITS:1  COG:ECs0132 KEGG:ns NR:ns ## COG: ECs0132 COG0842 # Protein_GI_number: 15829386 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1     256       1     256     256     431  100.0  1e-121
MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQ
FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFV
GILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTP
LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAF
YLICWSLIQRGRGLRS
>gi|223713515|gb|ACDM01000083.1| GENE   104    122634  -    123074    313    146 aa, chain + ## HITS:1  COG:yadI KEGG:ns NR:ns ## COG: yadI COG2893 # Protein_GI_number: 16128122 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli K12 # 1     146       1     146     146     302  100.0  1e-82
MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEG
VIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELG
APEVSSLWHQQQKNPPFVLKHNLYEY
>gi|223713515|gb|ACDM01000083.1| GENE   105    123138  -    124367    862    409 aa, chain + ## HITS:1  COG:yadE KEGG:ns NR:ns ## COG: yadE COG0726 # Protein_GI_number: 16128123 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1     409       1     409     409     837  100.0  0
MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA
ASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAG
SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILR
DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD
GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQS
HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAA
NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG
>gi|223713515|gb|ACDM01000083.1| GENE   106    124371  -    124751    434    126 aa, chain - ## HITS:1  COG:ECs0135 KEGG:ns NR:ns ## COG: ECs0135 COG0853 # Protein_GI_number: 15829389 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Escherichia coli O157:H7 # 1     126       1     126     126     249  100.0  8e-67
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAI
AAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKA
IPVQVA
>gi|223713515|gb|ACDM01000083.1| GENE   107    124701  -    124913     97     70 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_0140 NR:ns ## KEGG: ECH74115_0140 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 7      70       1      64      64     101   95.0  9e-21
MSHFHAVEFALQHRANHNFYLSTLSLTKQAMPALRKFSRSIARFLFSVYSSDGICVSSLR
TAPKRAMYRL
>gi|223713515|gb|ACDM01000083.1| GENE   108    125025  -    125927    683    300 aa, chain + ## HITS:1  COG:yadD KEGG:ns NR:ns ## COG: yadD COG5464 # Protein_GI_number: 16128125 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     300       1     300     300     586  100.0  1e-167
MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHS
TDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL
FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK
HIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGES
MMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKGMSREDVAEMANLPLAEIDKVINLI
>gi|223713515|gb|ACDM01000083.1| GENE   109    126001  -    126852   1007    283 aa, chain - ## HITS:1  COG:panC KEGG:ns NR:ns ## COG: panC COG0414 # Protein_GI_number: 16128126 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Escherichia coli K12 # 1     283       1     283     283     548  100.0  1e-156
MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM
QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG
ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRA
KDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRA
DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVELA
>gi|223713515|gb|ACDM01000083.1| GENE   110    126864  -    127538    884    224 aa, chain - ## HITS:1  COG:panB KEGG:ns NR:ns ## COG: panB COG0413 # Protein_GI_number: 16128127 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Escherichia coli K12 # 1     224      41     264     264     436  100.0  1e-122
MLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENA
ATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFG
ITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH
>gi|223713515|gb|ACDM01000083.1| GENE   111    127771  -    128697    364    308 aa, chain - ## HITS:1  COG:yadC KEGG:ns NR:ns ## COG: yadC COG3539 # Protein_GI_number: 16128128 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     308     105     412     412     561  100.0  1e-160
MVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYDTITDIQSPGIYIGDPSNQEFFFSVT
DSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKA
YSPGTKVVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGAS
PVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNP
LMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGNIAIEPGEFKAT
STFQVTYP
>gi|223713515|gb|ACDM01000083.1| GENE   112    129059  -    129655    139    198 aa, chain - ## HITS:1  COG:no KEGG:JW0132 NR:ns ## KEGG: JW0132 # Name: yadK # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1     198       1     198     198     382  100.0  1e-105
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGV
GYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANE
ISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPAL
SVTSGQLMSHVLVDIYYE
>gi|223713515|gb|ACDM01000083.1| GENE   113    129682  -    130284    428    200 aa, chain - ## HITS:1  COG:no KEGG:JW0133 NR:ns ## KEGG: JW0133 # Name: yadL # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1     200       2     201     201     306  100.0  4e-82
MTFKNLRYGLSSSVVLAASLFSVLSYAATDSIGLTVITTVEMGTCTATLVNDSDQDISVV
DFGDVYISEINAKTKVKTFKLKFKDCAGIPNKKAQIKLTKRATCEGTANDGAGFANGSTA
ADKASAVAVEVWSTVTPATGSATQFSCVTPASQEVTISTAANAVVYYPMSARLVVEKNKT
VNNVTAGKFSAPATFTVTYN
>gi|223713515|gb|ACDM01000083.1| GENE   114    130299  -    130682    275    127 aa, chain - ## HITS:1  COG:yadM KEGG:ns NR:ns ## COG: yadM COG3539 # Protein_GI_number: 16128131 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     127      77     203     203     233  100.0  7e-62
MGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSN
IGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALA
TFNFIYQ
>gi|223713515|gb|ACDM01000083.1| GENE   115    130885  -    133482   1492    865 aa, chain - ## HITS:1  COG:htrE KEGG:ns NR:ns ## COG: htrE COG3188 # Protein_GI_number: 16128132 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1     865       1     865     865    1664  100.0  0
MTIEYTKNYHHLTRIATFCALLYCNTAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAI
PGVYDVSVYVNDQPIINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLAR
DETLGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLS
YNLNGYHSETPGRKNESIYAAFNGGMNLGAWRLRASGNYNWMTDSGSNYDFKNRYVQRDI
ASLRSQLILGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTIT
QGGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVG
RWDISGGQVLKDDIQDEPNLFQASYYYGLNNYLTGYTGIQITDNNYTAGLLGLGLNTSVG
AFSFDVTHSNVRIPDDKTYQGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL
IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNR
SNYSIGYSNSTSWGSYSVSAQRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDT
QISSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKASKDLSYVGGYASYESPWGTLAG
SISANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI
DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAI
MNITRSDGKNIPFAADIYDEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLEQSKPVSCLA
HYQQSPEAEKIAQSIILNGIRCQIQ
>gi|223713515|gb|ACDM01000083.1| GENE   116    133517  -    134209    454    230 aa, chain - ## HITS:1  COG:ecpD KEGG:ns NR:ns ## COG: ecpD COG3121 # Protein_GI_number: 16128133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1     230      17     246     246     452  100.0  1e-127
MAFSSSSIADIVISGTRVIYKSDQKSVNVRLENKGNNPLLVQSWLDTGDDNAEPGSITVP
FTATPPVSRIDAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQL
AFRTRIKLFYRPDGLKGNPSEAPLALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASG
KRYPIDVKMIAPFSDEVMKVNGLNGKANSAKVHFYAINDFGGAIEGNARL
>gi|223713515|gb|ACDM01000083.1| GENE   117    134355  -    134939    465    194 aa, chain - ## HITS:1  COG:yadN KEGG:ns NR:ns ## COG: yadN COG3539 # Protein_GI_number: 16128134 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1     194       1     194     194     326  100.0  2e-89
MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTAT
VGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSIN
NPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATA
GYVKTNTAYTITYQ
>gi|223713515|gb|ACDM01000083.1| GENE   118    135309  -    135788    208    159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 4     158     122     270     278 84  36 2e-15
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVA
LETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMK
NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
>gi|223713515|gb|ACDM01000083.1| GENE   119    135785  -    137149   1377    454 aa, chain - ## HITS:1  COG:ECs0147 KEGG:ns NR:ns ## COG: ECs0147 COG0617 # Protein_GI_number: 15829401 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli O157:H7 # 1     454       1     454     454     862  100.0  0
MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRD
LLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNV
SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGV
IRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESL
KLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMR
VNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTR
DIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAP
PDQKGMLNELDEEPSPRRRTRRPRKRAPRREGTA
>gi|223713515|gb|ACDM01000083.1| GENE   120    137242  -    138138    519    298 aa, chain - ## HITS:1  COG:yadB KEGG:ns NR:ns ## COG: yadB COG0008 # Protein_GI_number: 16128137 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1     298      11     308     308     611  100.0  1e-175
MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETI
LRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCR
VLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDD
HFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPK
GDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVNSTFSNASC
>gi|223713515|gb|ACDM01000083.1| GENE   121    138205  -    138660    677    151 aa, chain - ## HITS:1  COG:ECs0149 KEGG:ns NR:ns ## COG: ECs0149 COG1734 # Protein_GI_number: 15829403 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Escherichia coli O157:H7 # 1     151       1     151     151     261  100.0  5e-70
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVT
HMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVE
IGIRRLEARPTADLCIDCKTLAEIREKQMAG
>gi|223713515|gb|ACDM01000083.1| GENE   122    138838  -    139542    367    234 aa, chain - ## HITS:1  COG:ECs0150 KEGG:ns NR:ns ## COG: ECs0150 COG1489 # Protein_GI_number: 15829404 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Escherichia coli O157:H7 # 1     234       1     234     234     467  100.0  1e-132
MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTK
RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI
DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAV
LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL
>gi|223713515|gb|ACDM01000083.1| GENE   123    139557  -    140087    470    176 aa, chain - ## HITS:1  COG:ligT KEGG:ns NR:ns ## COG: ligT COG1514 # Protein_GI_number: 16128140 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Escherichia coli K12 # 1     176       4     179     179     336  100.0  1e-92
MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
PFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ
>gi|223713515|gb|ACDM01000083.1| GENE   124    140116  -    142590   2155    824 aa, chain + ## HITS:1  COG:hrpB KEGG:ns NR:ns ## COG: hrpB COG1643 # Protein_GI_number: 16128141 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli K12 # 1     824       1     824     824    1485   99.0  0
MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP
GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT
RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ
QMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI
QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR
LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA
AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS
AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW
QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA
LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW
RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP
EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:25:10 2011
 Seq name: gi|223713514|gb|ACDM01000084.1| Escherichia sp. 4_1_40B cont1.84, whole genome shotgun sequence 
 Length of sequence - 58891 bp
 Number of predicted genes - 53, with homology - 53
 Number of transcription units - 25, operones - 14 average op.length -  3.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom        56 -       115    1.7 
     1     1 Tu  1     .       +    CDS        157 -      2691   3007  ## COG0744 Membrane carboxypeptidase (penicillin-binding protein)
                               +    Prom      2831 -      2890    6.2 
     2     2 Op  1   7/0.286   +    CDS       2911 -      5154   2585  ## COG1629 Outer membrane receptor proteins, mostly Fe transport
     3     2 Op  2  14/0.000   +    CDS       5205 -      6002    232  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
     4     2 Op  3  33/0.000   +    CDS       6002 -      6892    900  ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component
     5     2 Op  4     .       +    CDS       6889 -      8871   2009  ## COG0609 ABC-type Fe3+-siderophore transport system, permease component
                               -    Term      8848 -      8892    6.5 
     6     3 Tu  1     .       -    CDS       9029 -     10309   1476  ## COG0001 Glutamate-1-semialdehyde aminotransferase
                               -    Prom     10418 -     10477    5.4 
                               +    Prom     10300 -     10359    3.8 
     7     4 Op  1   3/1.000   +    CDS      10534 -     11955   1516  ## COG0038 Chloride channel protein EriC
     8     4 Op  2     .       +    CDS      12037 -     12381    488  ## COG0316 Uncharacterized conserved protein
                               +    Term     12393 -     12429    8.2 
     9     5 Tu  1     .       -    CDS      12428 -     12973    611  ## COG2860 Predicted membrane protein
                               -    Prom     13019 -     13078    2.5 
    10     6 Op  1   5/0.429   -    CDS      13089 -     13889    807  ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component
    11     6 Op  2     .       -    CDS      13882 -     14580    712  ## COG0775 Nucleoside phosphorylase
                               -    Prom     14681 -     14740    4.3 
                               +    Prom     14533 -     14592    2.0 
    12     7 Tu  1     .       +    CDS      14664 -     16181   1052  ## COG0232 dGTP triphosphohydrolase
                               +    Prom     16203 -     16262    2.8 
    13     8 Tu  1     .       +    CDS      16311 -     17735   1644  ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
                               +    Term     17746 -     17781    6.5 
                               +    Prom     17767 -     17826    3.8 
    14     9 Tu  1     .       +    CDS      17890 -     19047   1174  ## COG3835 Sugar diacid utilization regulator
                               +    Term     19112 -     19146    1.2 
    15    10 Tu  1     .       -    CDS      19136 -     19522    462  ## ECIAI1_0162 hypothetical protein
                               -    Prom     19551 -     19610    3.6 
    16    11 Tu  1     .       -    CDS      19684 -     20496    557  ## COG1408 Predicted phosphohydrolases
                               -    Term     20504 -     20538    5.0 
    17    12 Op  1   5/0.429   -    CDS      20550 -     21374   1028  ## COG2171 Tetrahydrodipicolinate N-succinyltransferase
    18    12 Op  2   9/0.143   -    CDS      21405 -     24077   2200  ## COG2844 UTP:GlnB (protein PII) uridylyltransferase
                               -    Term     24102 -     24135    4.5 
    19    12 Op  3     .       -    CDS      24139 -     24933    827  ## COG0024 Methionine aminopeptidase
                               -    Prom     25049 -     25108    4.5 
                               +    Prom     25008 -     25067    3.4 
    20    13 Op  1  38/0.000   +    CDS      25103 -     26026   1604  ## PROTEIN SUPPORTED gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2
                               +    Term     26201 -     26234    3.1 
                               +    Prom     26199 -     26258    3.8 
    21    13 Op  2  24/0.000   +    CDS      26284 -     27135   1001  ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts
                               +    Term     27146 -     27179    5.2 
                               +    Prom     27180 -     27239    4.9 
    22    13 Op  3     .       +    CDS      27282 -     28007   1028  ## COG0528 Uridylate kinase
                               -    Term     28024 -     28054   -0.7 
    23    14 Tu  1     .       -    CDS      28187 -     28384     60  ## ECIAI39_0174 hypothetical protein
                               -    Prom     28535 -     28594    2.1 
                               +    Prom     28163 -     28222    5.4 
    24    15 Op  1   8/0.286   +    CDS      28299 -     28856    809  ## COG0233 Ribosome recycling factor
                               +    Prom     28866 -     28925    2.1 
    25    15 Op  2   7/0.286   +    CDS      28948 -     30144    917  ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase
                               +    Term     30249 -     30278    0.4 
                               +    Prom     30151 -     30210    3.9 
    26    16 Op  1  32/0.000   +    CDS      30333 -     31091    523  ## COG0020 Undecaprenyl pyrophosphate synthase
    27    16 Op  2  12/0.000   +    CDS      31212 -     31961    648  ## COG0575 CDP-diglyceride synthetase
    28    16 Op  3  18/0.000   +    CDS      31973 -     33325    911  ## COG0750 Predicted membrane-associated Zn-dependent proteases 1
    29    16 Op  4  17/0.000   +    CDS      33355 -     35787   2682  ## COG4775 Outer membrane protein/protective antigen OMA87
                               +    Prom     35797 -     35856    2.1 
    30    16 Op  5  15/0.000   +    CDS      35909 -     36394    625  ## COG2825 Outer membrane protein
    31    16 Op  6  18/0.000   +    CDS      36398 -     37423    926  ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
                               +    Term     37450 -     37501    7.1 
                               +    Prom     37442 -     37501    4.0 
    32    17 Op  1  25/0.000   +    CDS      37528 -     37983    499  ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
    33    17 Op  2  11/0.000   +    CDS      37987 -     38775    772  ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
    34    17 Op  3  11/0.000   +    CDS      38775 -     39923   1185  ## COG0763 Lipid A disaccharide synthetase
    35    17 Op  4   6/0.286   +    CDS      39920 -     40516    702  ## COG0164 Ribonuclease HII
    36    17 Op  5   7/0.286   +    CDS      40553 -     44035   3567  ## COG0587 DNA polymerase III, alpha subunit
    37    17 Op  6   3/1.000   +    CDS      44048 -     45007   1344  ## COG0825 Acetyl-CoA carboxylase alpha subunit
                               +    Term     45028 -     45057    1.2 
                               +    Prom     45026 -     45085    3.5 
    38    18 Op  1   1/1.000   +    CDS      45106 -     47247   2029  ## COG1982 Arginine/lysine/ornithine decarboxylases
    39    18 Op  2   2/1.000   +    CDS      47304 -     47693    423  ## COG0346 Lactoylglutathione lyase and related lyases
                               +    Term     47713 -     47745    4.7 
    40    19 Tu  1     .       +    CDS      47758 -     49056   1138  ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
                               +    Term     49268 -     49326    1.3 
                               -    Term     49051 -     49095    6.6 
    41    20 Op  1     .       -    CDS      49105 -     49359    303  ## COG4568 Transcriptional antiterminator
    42    20 Op  2     .       -    CDS      49352 -     49552    165  ## ECIAI39_0458 hypothetical protein
                               -    Prom     49624 -     49683    3.3 
                               +    Prom     49637 -     49696    1.8 
    43    21 Op  1   5/0.429   +    CDS      49718 -     50263    787  ## COG4681 Uncharacterized protein conserved in bacteria
    44    21 Op  2   4/0.857   +    CDS      50260 -     50682    245  ## COG1186 Protein chain release factor B
    45    21 Op  3     .       +    CDS      50696 -     51406    692  ## COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance
                               -    Term     51357 -     51402    2.1 
    46    22 Op  1     .       -    CDS      51606 -     52430    362  ## JW5016 predicted lipoprotein
                               -    Term     52438 -     52478    9.0 
    47    22 Op  2   6/0.286   -    CDS      52484 -     54202   2125  ## COG0442 Prolyl-tRNA synthetase
                               -    Term     54220 -     54250    2.7 
    48    23 Op  1     .       -    CDS      54314 -     55021    614  ## COG1720 Uncharacterized conserved protein
    49    23 Op  2     .       -    CDS      55018 -     55422    368  ## EC55989_0194 outer membrane lipoprotein
                               -    Prom     55447 -     55506    2.5 
                               -    Term     55469 -     55505    6.7 
    50    24 Op  1  22/0.000   -    CDS      55540 -     56355   1222  ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen
    51    24 Op  2  32/0.000   -    CDS      56395 -     57048    926  ## COG2011 ABC-type metal ion transport system, permease component
    52    24 Op  3     .       -    CDS      57041 -     58072   1186  ## COG1135 ABC-type metal ion transport system, ATPase component
                               +    Prom     58034 -     58093    3.9 
    53    25 Tu  1     .       +    CDS      58260 -     58835    555  ## COG0241 Histidinol phosphatase and related phosphatases
Predicted protein(s)
>gi|223713514|gb|ACDM01000084.1| GENE     1       157  -      2691   3007    844 aa, chain + ## HITS:1  COG:mrcB KEGG:ns NR:ns ## COG: mrcB COG0744 # Protein_GI_number: 16128142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Escherichia coli K12 # 1     844       1     844     844    1521  100.0  0
MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEEPMPRKGKGKGKGRKPR
GKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTIS
KNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHL
ATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH
DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR
YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY
NPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQ
ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRF
SGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIAL
RQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPK
DQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAER
AVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTI
TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGM
RILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDM
FGSN
>gi|223713514|gb|ACDM01000084.1| GENE     2      2911  -      5154   2585    747 aa, chain + ## HITS:1  COG:ECs0154 KEGG:ns NR:ns ## COG: ECs0154 COG1629 # Protein_GI_number: 15829408 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 1     747       1     747     747    1461   99.0  0
MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPQESAWGPAAT
IAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTY
DHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGG
LLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKG
SEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN
EGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSK
QCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDI
NAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLV
TLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVG
KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRA
RGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPL
SGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE
YVASCFNTYGCFWGAERQVVATATFRF
>gi|223713514|gb|ACDM01000084.1| GENE     3      5205  -      6002    232    265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 9     235     274     507     563 94  29 2e-18
MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH
QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF
GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI
AHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET
LEMIYGIPMGILPHPAGAAPVSFVY
>gi|223713514|gb|ACDM01000084.1| GENE     4      6002  -      6892    900    296 aa, chain + ## HITS:1  COG:fhuD KEGG:ns NR:ns ## COG: fhuD COG0614 # Protein_GI_number: 16128145 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     296       1     296     296     585  100.0  1e-167
MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA
DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR
GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT
TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH
DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
>gi|223713514|gb|ACDM01000084.1| GENE     5      6889  -      8871   2009    660 aa, chain + ## HITS:1  COG:fhuB KEGG:ns NR:ns ## COG: fhuB COG0609 # Protein_GI_number: 16128146 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1     660       1     660     660     968   99.0  0
MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP
RLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA
ALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST
GTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLA
IVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR
VWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLM
AVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA
SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRML
LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL
CRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARM
MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR
>gi|223713514|gb|ACDM01000084.1| GENE     6      9029  -     10309   1476    426 aa, chain - ## HITS:1  COG:hemL KEGG:ns NR:ns ## COG: hemL COG0001 # Protein_GI_number: 16128147 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Escherichia coli K12 # 1     426       1     426     426     843   99.0  0
MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG
PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM
SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCT
YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM
TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG
NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT
DAESVTCYQDVMACDVERFKRFFHMMLGEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR
RVFAKL
>gi|223713514|gb|ACDM01000084.1| GENE     7     10534  -     11955   1516    473 aa, chain + ## HITS:1  COG:yadQ KEGG:ns NR:ns ## COG: yadQ COG0038 # Protein_GI_number: 16128148 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli K12 # 1     473       1     473     473     789  100.0  0
MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL
QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR
PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLAT
GAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALID
VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG
LCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM
LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ
LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT
>gi|223713514|gb|ACDM01000084.1| GENE     8     12037  -     12381    488    114 aa, chain + ## HITS:1  COG:STM0204 KEGG:ns NR:ns ## COG: STM0204 COG0316 # Protein_GI_number: 16763594 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1     114      16     129     129     221   99.0  4e-58
MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDM
TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI
>gi|223713514|gb|ACDM01000084.1| GENE     9     12428  -     12973    611    181 aa, chain - ## HITS:1  COG:yadS KEGG:ns NR:ns ## COG: yadS COG2860 # Protein_GI_number: 16128150 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     181      27     207     207     296  100.0  1e-80
MDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLP
KWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILR
TEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENG
R
>gi|223713514|gb|ACDM01000084.1| GENE    10     13089  -     13889    807    266 aa, chain - ## HITS:1  COG:yadT KEGG:ns NR:ns ## COG: yadT COG0614 # Protein_GI_number: 16128151 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     266       1     266     266     482  100.0  1e-136
MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKI
EQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALR
QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVL
EVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLT
SDWFERASPRIILAAQQLCNALSQVD
>gi|223713514|gb|ACDM01000084.1| GENE    11     13882  -     14580    712    232 aa, chain - ## HITS:1  COG:STM0207 KEGG:ns NR:ns ## COG: STM0207 COG0775 # Protein_GI_number: 16763597 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Salmonella typhimurium LT2 # 1     232       1     232     232     412   96.0  1e-115
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT
LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK
ADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH
VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
>gi|223713514|gb|ACDM01000084.1| GENE    12     14664  -     16181   1052    505 aa, chain + ## HITS:1  COG:dgt KEGG:ns NR:ns ## COG: dgt COG0232 # Protein_GI_number: 16128153 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Escherichia coli K12 # 1     505       1     505     505    1011   99.0  0
MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN
AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG
NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDL
CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE
AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG
QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF
AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVEQLELQGYRVISGLLEIYRPLLSL
SLSDFTELVEKERVKRFPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL
LQDYISGMTDLYAWDEYRRLMAVEQ
>gi|223713514|gb|ACDM01000084.1| GENE    13     16311  -     17735   1644    474 aa, chain + ## HITS:1  COG:ECs0165 KEGG:ns NR:ns ## COG: ECs0165 COG0265 # Protein_GI_number: 15829419 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli O157:H7 # 1     474       1     474     474     780  100.0  0
MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGS
TTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIID
ADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD
SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGAL
VNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNS
ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG
SKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGT
PAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
>gi|223713514|gb|ACDM01000084.1| GENE    14     17890  -     19047   1174    385 aa, chain + ## HITS:1  COG:yaeG KEGG:ns NR:ns ## COG: yaeG COG3835 # Protein_GI_number: 16128155 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Escherichia coli K12 # 1     385       7     391     391     734  100.0  0
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRV
VDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSR
LMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDS
AMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKE
YGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRG
DWQANELARPLARLKTMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISE
LTGLDLGNFDDRLLLYVALQLDEER
>gi|223713514|gb|ACDM01000084.1| GENE    15     19136  -     19522    462    128 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_0162 NR:ns ## KEGG: ECIAI1_0162 # Name: yaeH # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1     128       1     128     128     218  100.0  6e-56
MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD
GVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA
DLEKLTRK
>gi|223713514|gb|ACDM01000084.1| GENE    16     19684  -     20496    557    270 aa, chain - ## HITS:1  COG:yaeI KEGG:ns NR:ns ## COG: yaeI COG1408 # Protein_GI_number: 16128157 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Escherichia coli K12 # 24     270       1     247     247     523  100.0  1e-148
MISRRRFLQATAATIATSSGFGYMHYCEPGWFELIRHRLAFFKDNAAPFKILFLADLHYS
RFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMSLNFSAFSDVLSPLAECAPTFACFGN
HDRPVGTEKNHLIGETLKSAGITVLFNQATVIATPNRQFELVGTGDLWAGQCKPPPASEA
NLPRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFG
ERHIYTTRGVGSLYGLRLNCRPEVTMLELV
>gi|223713514|gb|ACDM01000084.1| GENE    17     20550  -     21374   1028    274 aa, chain - ## HITS:1  COG:dapD KEGG:ns NR:ns ## COG: dapD COG2171 # Protein_GI_number: 16128159 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Escherichia coli K12 # 1     274       1     274     274     521  100.0  1e-148
MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK
KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN
TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED
NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID
>gi|223713514|gb|ACDM01000084.1| GENE    18     21405  -     24077   2200    890 aa, chain - ## HITS:1  COG:glnD KEGG:ns NR:ns ## COG: glnD COG2844 # Protein_GI_number: 16128160 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: UTP:GlnB (protein PII) uridylyltransferase # Organism: Escherichia coli K12 # 1     890       1     890     890    1790  100.0  0
MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL
IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDVDLLILSRKKLPDDQ
AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK
HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF
GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN
YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL
IDLRDETLFMRQPEAILRMFYTMVHNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKL
FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE
SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG
LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA
TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL
HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL
FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGNPLSADRHEVIRFGLEQVLTQ
SSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI
SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG
>gi|223713514|gb|ACDM01000084.1| GENE    19     24139  -     24933    827    264 aa, chain - ## HITS:1  COG:ECs0170 KEGG:ns NR:ns ## COG: ECs0170 COG0024 # Protein_GI_number: 15829424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Escherichia coli O157:H7 # 1     264       1     264     264     537  100.0  1e-153
MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL
GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI
MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE
PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV
TDNGCEILTLRKDDTIPAIISHDE
>gi|223713514|gb|ACDM01000084.1| GENE    20     25103  -     26026   1604    307 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2 [Escherichia coli CFT073] # 1     307       1     307     307 622  99 1e-177
MVSTTYLWYKARRTSDPFRIHRLDGSDNLTLCNNTHVSAHIPGCPLGSVIWDTWRHNPNF
YIEVLIMATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEAL
AELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRL
KDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIK
EANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAE
ESFVEAE
>gi|223713514|gb|ACDM01000084.1| GENE    21     26284  -     27135   1001    283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1     280       1     279     283 390  71 1e-107
MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG
VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV
ALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEF
IKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK
TVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS
>gi|223713514|gb|ACDM01000084.1| GENE    22     27282  -     28007   1028    241 aa, chain + ## HITS:1  COG:ECs0173 KEGG:ns NR:ns ## COG: ECs0173 COG0528 # Protein_GI_number: 15829427 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Escherichia coli O157:H7 # 1     241       1     241     241     460  100.0  1e-130
MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNL
FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWA
EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT
ATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT
E
>gi|223713514|gb|ACDM01000084.1| GENE    23     28187  -     28384     60     65 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_0174 NR:ns ## KEGG: ECIAI39_0174 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1      60      12      71      92      92   98.0  3e-18
MRILLIWVLNASTHLSMRTSASFLISLITLRILENLSQSDQTVTHSGSVLSIALIKHITG
NRLDY
>gi|223713514|gb|ACDM01000084.1| GENE    24     28299  -     28856    809    185 aa, chain + ## HITS:1  COG:ECs0174 KEGG:ns NR:ns ## COG: ECs0174 COG0233 # Protein_GI_number: 15829428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Escherichia coli O157:H7 # 1     185       1     185     185     296  100.0  1e-80
MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE
DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE
AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA
ELMQF
>gi|223713514|gb|ACDM01000084.1| GENE    25     28948  -     30144    917    398 aa, chain + ## HITS:1  COG:dxr KEGG:ns NR:ns ## COG: dxr COG0743 # Protein_GI_number: 16128166 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Escherichia coli K12 # 1     398       1     398     398     759  100.0  0
MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEA
SAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI
LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS
ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN
ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC
KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN
LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS
>gi|223713514|gb|ACDM01000084.1| GENE    26     30333  -     31091    523    252 aa, chain + ## HITS:1  COG:ECs0176 KEGG:ns NR:ns ## COG: ECs0176 COG0020 # Protein_GI_number: 15829430 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Escherichia coli O157:H7 # 1     252       2     253     253     509  100.0  1e-144
MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNG
IEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQ
ERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV
CMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRER
RFGGTEPGDETA
>gi|223713514|gb|ACDM01000084.1| GENE    27     31212  -     31961    648    249 aa, chain + ## HITS:1  COG:ECs0177 KEGG:ns NR:ns ## COG: ECs0177 COG0575 # Protein_GI_number: 15829431 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Escherichia coli O157:H7 # 1     249       1     249     249     418  100.0  1e-117
MLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWW
IVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLY
VMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVA
PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
LLLLVFRTL
>gi|223713514|gb|ACDM01000084.1| GENE    28     31973  -     33325    911    450 aa, chain + ## HITS:1  COG:ECs0178 KEGG:ns NR:ns ## COG: ECs0178 COG0750 # Protein_GI_number: 15829432 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Escherichia coli O157:H7 # 1     450       1     450     450     872  100.0  0
MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV
IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWLVF
IIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI
TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL
QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG
FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG
PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS
ERVQDFCYRIGSILLVLLMGLALFNDFSRL
>gi|223713514|gb|ACDM01000084.1| GENE    29     33355  -     35787   2682    810 aa, chain + ## HITS:1  COG:ECs0179 KEGG:ns NR:ns ## COG: ECs0179 COG4775 # Protein_GI_number: 15829433 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Escherichia coli O157:H7 # 1     810       1     810     810    1609  100.0  0
MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS
NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR
VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI
NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI
DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTK
VTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS
KDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE
RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV
DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQ
PQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVT
IPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTV
RGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT
PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPL
GPLVFSYAQPFKKYDGDKAEQFQFNIGKTW
>gi|223713514|gb|ACDM01000084.1| GENE    30     35909  -     36394    625    161 aa, chain + ## HITS:1  COG:STM0225 KEGG:ns NR:ns ## COG: STM0225 COG2825 # Protein_GI_number: 16763615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1     161       1     161     161     209   90.0  2e-54
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRM
ETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI
QTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
>gi|223713514|gb|ACDM01000084.1| GENE    31     36398  -     37423    926    341 aa, chain + ## HITS:1  COG:lpxD KEGG:ns NR:ns ## COG: lpxD COG1044 # Protein_GI_number: 16128172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Escherichia coli K12 # 1     341       1     341     341     650  100.0  0
MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVV
MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGA
NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA
DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHN
VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV
YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD
>gi|223713514|gb|ACDM01000084.1| GENE    32     37528  -     37983    499    151 aa, chain + ## HITS:1  COG:ZfabZ KEGG:ns NR:ns ## COG: ZfabZ COG0764 # Protein_GI_number: 15799862 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 EDL933 # 1     151       1     151     151     295  100.0  2e-80
MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI
FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT
RRGLTRFKGVALVDGKVVCEATMMCARSREA
>gi|223713514|gb|ACDM01000084.1| GENE    33     37987  -     38775    772    262 aa, chain + ## HITS:1  COG:lpxA KEGG:ns NR:ns ## COG: lpxA COG1043 # Protein_GI_number: 16128174 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Escherichia coli K12 # 1     262       1     262     262     511  100.0  1e-145
MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN
EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMIN
AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD
VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELA
ETYPEVKAFTDFFARSTRGLIR
>gi|223713514|gb|ACDM01000084.1| GENE    34     38775  -     39923   1185    382 aa, chain + ## HITS:1  COG:lpxB KEGG:ns NR:ns ## COG: lpxB COG0763 # Protein_GI_number: 16128175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Escherichia coli K12 # 1     382       1     382     382     748  100.0  0
MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEEL
AVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHY
VSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNA
ARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQ
FERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF
WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRE
LHQQIRCNADEQAAQAVLELAQ
>gi|223713514|gb|ACDM01000084.1| GENE    35     39920  -     40516    702    198 aa, chain + ## HITS:1  COG:rnhB KEGG:ns NR:ns ## COG: rnhB COG0164 # Protein_GI_number: 16128176 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Escherichia coli K12 # 1     198       1     198     198     372  100.0  1e-103
MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEE
IKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAM
AVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGAT
EHHRRSFGPVKRALGLAS
>gi|223713514|gb|ACDM01000084.1| GENE    36     40553  -     44035   3567   1160 aa, chain + ## HITS:1  COG:dnaE KEGG:ns NR:ns ## COG: dnaE COG0587 # Protein_GI_number: 16128177 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Escherichia coli K12 # 1    1160       1    1160    1160    2374  100.0  0
MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW
LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES
YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL
EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
>gi|223713514|gb|ACDM01000084.1| GENE    37     44048  -     45007   1344    319 aa, chain + ## HITS:1  COG:ECs0187 KEGG:ns NR:ns ## COG: ECs0187 COG0825 # Protein_GI_number: 15829441 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Escherichia coli O157:H7 # 1     319       1     319     319     619  100.0  1e-177
MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGA
WQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQK
GRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEA
IARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS
ADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVL
STEDLKNRRYQRLMSYGYA
>gi|223713514|gb|ACDM01000084.1| GENE    38     45106  -     47247   2029    713 aa, chain + ## HITS:1  COG:ldcC KEGG:ns NR:ns ## COG: ldcC COG1982 # Protein_GI_number: 16128179 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1     713       1     713     713    1511  100.0  0
MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD
EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQY
TDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADV
SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLI
DRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVH
AVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVAGKVIF
ETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAAMLRGNP
GKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDAD
ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIG
IDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKH
DLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLM
PGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLKMAG
>gi|223713514|gb|ACDM01000084.1| GENE    39     47304  -     47693    423    129 aa, chain + ## HITS:1  COG:yaeR KEGG:ns NR:ns ## COG: yaeR COG0346 # Protein_GI_number: 16128180 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Escherichia coli K12 # 1     129      10     138     138     270   99.0  6e-73
MLGLKQVHHIAIIATDYAVSTAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFS
FPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCETIRVDPYTQKRFTFFNDPD
GLPLELYEQ
>gi|223713514|gb|ACDM01000084.1| GENE    40     47758  -     49056   1138    432 aa, chain + ## HITS:1  COG:mesJ KEGG:ns NR:ns ## COG: mesJ COG0037 # Protein_GI_number: 16128181 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Escherichia coli K12 # 1     432       1     432     432     805  100.0  0
MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAW
VTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQ
CETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESN
QDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQGT
LQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEI
RRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRF
KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGE
NGVSFVWQKTLS
>gi|223713514|gb|ACDM01000084.1| GENE    41     49105  -     49359    303     84 aa, chain - ## HITS:1  COG:ECs0191 KEGG:ns NR:ns ## COG: ECs0191 COG4568 # Protein_GI_number: 15829445 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1      84       3      86      86     155  100.0  1e-38
MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET
RELRLDKITSFSHPEIGTVVVSES
>gi|223713514|gb|ACDM01000084.1| GENE    42     49352  -     49552    165     66 aa, chain - ## HITS:1  COG:no KEGG:ECIAI39_0458 NR:ns ## KEGG: ECIAI39_0458 # Name: yaeP # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1      66       1      66      66     107  100.0  1e-22
MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV
SDYVNE
>gi|223713514|gb|ACDM01000084.1| GENE    43     49718  -     50263    787    181 aa, chain + ## HITS:1  COG:yaeQ KEGG:ns NR:ns ## COG: yaeQ COG4681 # Protein_GI_number: 16128183 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     181       1     181     181     331  100.0  5e-91
MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRLLAWLKYADERLQFTRG
LCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWWQQNQ
SKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGVIWLSDDKNNLEVNLTAWQQP
S
>gi|223713514|gb|ACDM01000084.1| GENE    44     50260  -     50682    245    140 aa, chain + ## HITS:1  COG:yaeJ KEGG:ns NR:ns ## COG: yaeJ COG1186 # Protein_GI_number: 16128184 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli K12 # 1     140       1     140     140     210  100.0  8e-55
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAAS
HHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLA
SKAQKSSVKAMRGKVRSGRE
>gi|223713514|gb|ACDM01000084.1| GENE    45     50696  -     51406    692    236 aa, chain + ## HITS:1  COG:cutF KEGG:ns NR:ns ## COG: cutF COG3015 # Protein_GI_number: 16128185 # Func_class: M Cell wall/membrane/envelope biogenesis; P Inorganic ion transport and metabolism # Function: Uncharacterized lipoprotein NlpE involved in copper resistance # Organism: Escherichia coli K12 # 1     236       1     236     236     470  100.0  1e-132
MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPCADCEGIETS
LFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDALEML
DREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELE
RSYLAARGHSEKPVLLSVEGHFTLEGNPDTGAPTKVLAPDTAGKFYPNQDCSSLGQ
>gi|223713514|gb|ACDM01000084.1| GENE    46     51606  -     52430    362    274 aa, chain - ## HITS:1  COG:no KEGG:JW5016 NR:ns ## KEGG: JW5016 # Name: yaeF # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1     274       1     274     274     528  100.0  1e-148
MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEI
TAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAM
KHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSED
FRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRI
GDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
>gi|223713514|gb|ACDM01000084.1| GENE    47     52484  -     54202   2125    572 aa, chain - ## HITS:1  COG:ECs0196 KEGG:ns NR:ns ## COG: ECs0196 COG0442 # Protein_GI_number: 15829450 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1     572       1     572     572    1135   99.0  0
MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE
MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN
ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA
YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAANIELAEAIA
PKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVEGSSFPLVALLVRG
DHELNEVKAEKLPQVASPLTFATEEEIRAVVKAGPGSLGPVNMPIPVVIDRTVAAMSDFA
AGANIDGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTK
YSEALKASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILP
MNMHKSFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLD
NDDIEYKYRRNGEKQLIKTGDIVEYLVKQIKG
>gi|223713514|gb|ACDM01000084.1| GENE    48     54314  -     55021    614    235 aa, chain - ## HITS:1  COG:ECs0197 KEGG:ns NR:ns ## COG: ECs0197 COG1720 # Protein_GI_number: 15829451 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     235       1     235     235     469   99.0  1e-132
MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWIL
FVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEVVCHKDSVILK
LGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAEMAVSFTAEVEKQLLTLEKRY
PQLTLFIREVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVTDAGFEVFALEPR
>gi|223713514|gb|ACDM01000084.1| GENE    49     55018  -     55422    368    134 aa, chain - ## HITS:1  COG:no KEGG:EC55989_0194 NR:ns ## KEGG: EC55989_0194 # Name: rcsF # Def: outer membrane lipoprotein # Organism: E.coli_55989 # Pathway: Two-component system [PATH:eck02020] # 1     134       1     134     134     220  100.0  1e-56
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG
KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR
QAVCIGSALNITAK
>gi|223713514|gb|ACDM01000084.1| GENE    50     55540  -     56355   1222    271 aa, chain - ## HITS:1  COG:yaeC KEGG:ns NR:ns ## COG: yaeC COG1464 # Protein_GI_number: 16128190 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli K12 # 1     271       1     271     271     507  100.0  1e-144
MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLD
VELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKK
IKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIV
ELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDA
ENVKKFVQAYQSDEVYEAANKVFNGGAVKGW
>gi|223713514|gb|ACDM01000084.1| GENE    51     56395  -     57048    926    217 aa, chain - ## HITS:1  COG:yaeE KEGG:ns NR:ns ## COG: yaeE COG2011 # Protein_GI_number: 16128191 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Escherichia coli K12 # 1     217       1     217     217     310  100.0  9e-85
MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIV
NIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLI
EASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYG
YIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK
>gi|223713514|gb|ACDM01000084.1| GENE    52     57041  -     58072   1186    343 aa, chain - ## HITS:1  COG:ECs0201 KEGG:ns NR:ns ## COG: ECs0201 COG1135 # Protein_GI_number: 15829455 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1     343       1     343     343     676   99.0  0
MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG
SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR
VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL
ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF
IQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQ
MDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV
>gi|223713514|gb|ACDM01000084.1| GENE    53     58260  -     58835    555    191 aa, chain + ## HITS:1  COG:ECs0202 KEGG:ns NR:ns ## COG: ECs0202 COG0241 # Protein_GI_number: 15829456 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Escherichia coli O157:H7 # 1     191       1     191     191     395  100.0  1e-110
MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR
GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA
RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP
QAIKKQQKPAQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:26:16 2011
 Seq name: gi|223713513|gb|ACDM01000085.1| Escherichia sp. 4_1_40B cont1.85, whole genome shotgun sequence 
 Length of sequence - 159408 bp
 Number of predicted genes - 149, with homology - 148
 Number of transcription units - 76, operones - 38 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       103 -       162    7.7 
     1     1 Op  1   5/0.258   +    CDS        293 -       985    567  ## COG2186 Transcriptional regulators
     2     1 Op  2     .       +    CDS       1008 -      2435    847  ## COG0477 Permeases of the major facilitator superfamily
     3     2 Op  1  13/0.000   -    CDS       2401 -      3384    850  ## COG1609 Transcriptional regulators
     4     2 Op  2   8/0.032   -    CDS       3397 -      4341    799  ## COG0524 Sugar kinases, ribokinase family
     5     3 Op  1  16/0.000   -    CDS       4452 -      5342   1179  ## COG1879 ABC-type sugar transport system, periplasmic component
     6     3 Op  2  21/0.000   -    CDS       5367 -      6332   1267  ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
     7     3 Op  3   9/0.032   -    CDS       6337 -      7842   1798  ## COG1129 ABC-type sugar transport system, ATPase component
     8     3 Op  4   4/0.290   -    CDS       7850 -      8269    423  ## COG1869 ABC-type ribose transport system, auxiliary component
                               -    Prom      8364 -      8423    4.1 
                               -    Term      8390 -      8430    5.6 
     9     4 Tu  1     .       -    CDS       8436 -     10304   1764  ## COG3158 K+ transporter
                               -    Prom     10446 -     10505    4.5 
                               +    Prom     10431 -     10490    2.8 
    10     5 Op  1   7/0.097   +    CDS      10527 -     12023   1445  ## COG0714 MoxR-like ATPases
    11     5 Op  2     .       +    CDS      12017 -     13468   1122  ## COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
    12     6 Tu  1     .       -    CDS      13473 -     14465   1200  ## COG2502 Asparagine synthetase A
                               -    Prom     14535 -     14594    4.0 
                               +    Prom     14532 -     14591    6.7 
    13     7 Op  1   4/0.290   +    CDS      14617 -     15075    498  ## COG1522 Transcriptional regulators
                               +    Prom     15084 -     15143    2.0 
    14     7 Op  2   5/0.258   +    CDS      15165 -     15608    573  ## COG0716 Flavodoxins
                               +    Prom     15835 -     15894    4.7 
    15     8 Op  1  24/0.000   +    CDS      15987 -     17876   1955  ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division
    16     8 Op  2   3/0.581   +    CDS      17940 -     18563    559  ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
                               +    Term     18651 -     18702    4.2 
                               +    Prom     19036 -     19095    5.8 
    17     9 Op  1   8/0.032   +    CDS      19180 -     19560    192  ## COG3312 F0F1-type ATP synthase, subunit I
    18     9 Op  2  40/0.000   +    CDS      19569 -     20384    820  ## COG0356 F0F1-type ATP synthase, subunit a
    19     9 Op  3  37/0.000   +    CDS      20431 -     20670    374  ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K
    20     9 Op  4  38/0.000   +    CDS      20732 -     21202    567  ## COG0711 F0F1-type ATP synthase, subunit b
    21     9 Op  5  41/0.000   +    CDS      21217 -     21750    587  ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)
    22     9 Op  6  42/0.000   +    CDS      21763 -     23304   1803  ## COG0056 F0F1-type ATP synthase, alpha subunit
    23     9 Op  7  42/0.000   +    CDS      23355 -     24218   1011  ## COG0224 F0F1-type ATP synthase, gamma subunit
    24     9 Op  8  42/0.000   +    CDS      24245 -     25627   1696  ## COG0055 F0F1-type ATP synthase, beta subunit
    25     9 Op  9   6/0.194   +    CDS      25648 -     26067    486  ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
                               +    Term     26090 -     26123    4.5 
                               +    Prom     26300 -     26359    3.2 
    26    10 Op  1   9/0.032   +    CDS      26420 -     27790   1693  ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)
    27    10 Op  2   2/0.871   +    CDS      27952 -     29781   2335  ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
                               +    Term     29787 -     29824    5.3 
                               +    Prom     29957 -     30016    8.3 
    28    11 Op  1  39/0.000   +    CDS      30095 -     31135   1241  ## COG0226 ABC-type phosphate transport system, periplasmic component
    29    11 Op  2  38/0.000   +    CDS      31222 -     32181   1279  ## COG0573 ABC-type phosphate transport system, permease component
    30    11 Op  3  41/0.000   +    CDS      32181 -     33071   1151  ## COG0581 ABC-type phosphate transport system, permease component
                               +    Prom     33159 -     33218    1.7 
    31    11 Op  4  32/0.000   +    CDS      33254 -     34027    345  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
    32    11 Op  5   1/0.935   +    CDS      34042 -     34767    907  ## COG0704 Phosphate uptake regulator
                               +    Term     34777 -     34819    9.0 
                               +    Prom     34784 -     34843    6.8 
    33    12 Tu  1     .       +    CDS      35053 -     35889    635  ## COG3711 Transcriptional antiterminator
                               +    Term     35937 -     35992   12.3 
                               +    Prom     35924 -     35983    4.9 
    34    13 Op  1   8/0.032   +    CDS      36023 -     37900   1335  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
    35    13 Op  2   1/0.935   +    CDS      37919 -     39331   1165  ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase
                               +    Term     39336 -     39379    9.2 
    36    14 Op  1     .       +    CDS      39400 -     41016   1537  ## COG4580 Maltoporin (phage lambda and maltose receptor)
    37    14 Op  2     .       +    CDS      41043 -     42212   1144  ## COG2382 Enterochelin esterase and related enzymes
    38    14 Op  3     .       +    CDS      42227 -     42949    801  ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
                               +    Term     42963 -     43004    8.0 
    39    15 Op  1     .       -    CDS      43011 -     43598    250  ## COG3196 Uncharacterized protein conserved in bacteria
    40    15 Op  2     .       -    CDS      43647 -     44114    237  ## JW3694 predicted inner membrane protein
    41    15 Op  3     .       -    CDS      44181 -     44846    640  ## COG0637 Predicted phosphatase/phosphohexomutase
                               -    Prom     44908 -     44967    4.3 
                               +    Prom     44864 -     44923    2.5 
    42    16 Tu  1     .       +    CDS      45011 -     46348   1636  ## COG2252 Permeases
                               +    Term     46361 -     46411    6.6 
                               -    Term     46357 -     46393    5.3 
    43    17 Op  1   3/0.581   -    CDS      46402 -     46968    744  ## COG0431 Predicted flavoprotein
    44    17 Op  2   4/0.290   -    CDS      46990 -     47751    544  ## COG2091 Phosphopantetheinyl transferase
                               -    Prom     47833 -     47892    6.7 
    45    18 Op  1   9/0.032   -    CDS      47896 -     48855    774  ## COG0583 Transcriptional regulator
    46    18 Op  2   3/0.581   -    CDS      48830 -     50005    956  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     50032 -     50091    2.5 
                               -    Term     50096 -     50124    0.6 
    47    19 Op  1   3/0.581   -    CDS      50137 -     51384   1092  ## COG0814 Amino acid permeases
                               -    Term     51425 -     51463    3.7 
    48    19 Op  2     .       -    CDS      51475 -     52890   1825  ## COG3033 Tryptophanase
                               -    Prom     53006 -     53065    3.9 
                               -    Term     53372 -     53418   13.3 
    49    20 Op  1  10/0.000   -    CDS      53428 -     54792   1634  ## COG0486 Predicted GTPase
                               -    Term     54842 -     54872    3.0 
    50    20 Op  2  22/0.000   -    CDS      54898 -     56544   2024  ## COG0706 Preprotein translocase subunit YidC
                               -    Prom     56608 -     56667    3.9 
    51    20 Op  3     .       -    CDS      56768 -     57094    229  ## COG0594 RNase P protein component
    52    20 Op  4     .       -    CDS      57144 -     57284    228  ## PROTEIN SUPPORTED gi|15804297|ref|NP_290336.1| 50S ribosomal protein L34
                               -    Prom     57380 -     57439    6.3 
    53    21 Op  1  16/0.000   +    CDS      57891 -     59294   1236  ## COG0593 ATPase involved in DNA replication initiation
    54    21 Op  2  18/0.000   +    CDS      59299 -     60399   1216  ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
    55    21 Op  3   9/0.032   +    CDS      60399 -     61472    746  ## COG1195 Recombinational DNA repair ATPase (RecF pathway)
    56    21 Op  4   1/0.935   +    CDS      61501 -     63915   3036  ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
                               +    Term     64047 -     64089   11.9 
                               +    Prom     64049 -     64108    6.6 
    57    22 Op  1     .       +    CDS      64155 -     64553    547  ## COG3753 Uncharacterized protein conserved in bacteria
                               +    Term     64561 -     64599    2.3 
                               +    Prom     64558 -     64617    4.2 
    58    22 Op  2     .       +    CDS      64668 -     65480   1215  ## COG0561 Predicted hydrolases of the HAD superfamily
                               +    Term     65484 -     65536   12.7 
                               -    Term     65469 -     65525    3.2 
    59    23 Tu  1     .       -    CDS      65526 -     66182    267  ## EcE24377A_4205 hypothetical protein
                               -    Prom     66325 -     66384    4.8 
                               +    Prom     66269 -     66328    8.7 
    60    24 Op  1   1/0.935   +    CDS      66460 -     67149    670  ## COG2186 Transcriptional regulators
    61    24 Op  2   2/0.871   +    CDS      67146 -     68024    549  ## COG3734 2-keto-3-deoxy-galactonokinase
    62    24 Op  3   1/0.935   +    CDS      68008 -     68625    547  ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase
    63    24 Op  4   7/0.097   +    CDS      68622 -     69770   1595  ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
    64    25 Tu  1     .       +    CDS      69890 -     71182   1432  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     71193 -     71239    4.0 
    65    26 Tu  1     .       -    CDS      71179 -     72243    615  ## COG0644 Dehydrogenases (flavoproteins)
                               +    Prom     72260 -     72319    4.6 
    66    27 Tu  1     .       +    CDS      72344 -     73558    904  ## JW5860 conserved hypothetical protein
    67    28 Tu  1     .       -    CDS      73560 -     73823    296  ## COG5645 Predicted periplasmic lipoprotein
                               -    Prom     74011 -     74070    3.0 
    68    29 Tu  1   4/0.290   +    CDS      74198 -     74611    587  ## COG0071 Molecular chaperone (small heat shock protein)
    69    30 Tu  1   1/0.935   +    CDS      74723 -     75151    559  ## COG0071 Molecular chaperone (small heat shock protein)
                               +    Term     75167 -     75199    5.4 
                               +    Prom     75171 -     75230    4.4 
    70    31 Tu  1     .       +    CDS      75347 -     77008   1954  ## COG2985 Predicted permease
                               +    Term     77016 -     77062   11.3 
    71    32 Tu  1     .       -    CDS      77005 -     77721    666  ## COG2188 Transcriptional regulators
                               +    Prom     77757 -     77816    3.4 
    72    33 Tu  1   2/0.871   +    CDS      78017 -     79633   1842  ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
                               +    Prom     79697 -     79756    3.5 
    73    34 Op  1     .       +    CDS      79875 -     80270    319  ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases
    74    34 Op  2     .       +    CDS      80270 -     80446    214  ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases
                               +    Term     80449 -     80495   10.0 
    75    35 Tu  1     .       -    CDS      80443 -     81336    592  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     81366 -     81425    2.6 
                               +    Prom     81292 -     81351    5.0 
    76    36 Op  1   4/0.290   +    CDS      81503 -     83455   1669  ## COG4146 Predicted symporter
    77    36 Op  2     .       +    CDS      83305 -     84549   1069  ## COG3119 Arylsulfatase A and related enzymes
                               +    Term     84556 -     84594    4.2 
                               -    Term     84544 -     84582    1.2 
    78    37 Tu  1     .       -    CDS      84596 -     85006    344  ## B21_03504 hypothetical protein
                               -    Prom     85110 -     85169    4.8 
                               +    Prom     84987 -     85046    3.6 
    79    38 Op  1     .       +    CDS      85153 -     85500    464  ## COG2149 Predicted membrane protein
    80    38 Op  2     .       +    CDS      85490 -     85852    242  ## ECO111_4500 putative inner membrane protein
    81    38 Op  3     .       +    CDS      85849 -     86346    366  ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)
                               -    Term     86292 -     86341    2.0 
    82    39 Tu  1     .       -    CDS      86354 -     87505   1252  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     87560 -     87619    5.3 
                               -    Term     87761 -     87795    7.0 
    83    40 Tu  1     .       -    CDS      87818 -     87907    118  ## 
                               -    Prom     88123 -     88182    5.0 
    84    41 Op  1  32/0.000   +    CDS      88676 -     90364   1773  ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
    85    41 Op  2   1/0.935   +    CDS      90368 -     90658    354  ## COG0440 Acetolactate synthase, small (regulatory) subunit
                               +    Term     90681 -     90719    6.0 
    86    42 Op  1   5/0.258   +    CDS      90734 -     91324    785  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
    87    42 Op  2   5/0.258   +    CDS      91324 -     92826   1216  ## COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific
    88    42 Op  3   3/0.581   +    CDS      92836 -     94155   1275  ## COG2271 Sugar phosphate permease
                               +    Prom     94207 -     94266    2.3 
    89    43 Tu  1     .       +    CDS      94293 -     95684   1792  ## COG2271 Sugar phosphate permease
                               +    Term     95703 -     95733    3.3 
    90    44 Tu  1     .       -    CDS      95730 -     97496   1636  ## COG1001 Adenine deaminase
                               -    Prom     97546 -     97605    6.1 
                               +    Prom     97481 -     97540    5.8 
    91    45 Op  1     .       +    CDS      97659 -     99005   1266  ## COG2252 Permeases
    92    45 Op  2     .       +    CDS      99058 -     99510    394  ## APECO1_2789 hypothetical protein
                               +    Prom     99630 -     99689    3.7 
    93    46 Tu  1     .       +    CDS      99721 -    100911   1196  ## COG2814 Arabinose efflux permease
    94    47 Tu  1     .       -    CDS     100952 -    101245    261  ## SSON_3614 putative transport protein
                               -    Prom    101445 -    101504    5.6 
                               +    Prom    101384 -    101443    5.8 
    95    48 Tu  1     .       +    CDS     101467 -    102285    784  ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen
                               -    Term    102165 -    102221    5.2 
    96    49 Op  1   8/0.032   -    CDS     102289 -    103212    697  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
                               -    Prom    103247 -    103306    2.3 
    97    49 Op  2     .       -    CDS     103323 -    104507    670  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    104690 -    104749    9.8 
    98    50 Tu  1     .       -    CDS     104889 -    105035     62  ## ECB_03541 hypothetical protein
                               -   TRNA     105148 -    105238   75.2  # SeC(p) TCA 0 0
                               +    Prom    105331 -    105390    8.2 
    99    51 Op  1   3/0.581   +    CDS     105531 -    106913   1222  ## COG2211 Na+/melibiose symporter and related transporters
   100    51 Op  2     .       +    CDS     106923 -    109241   2197  ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases
                               -    Term    109056 -    109093   -0.3 
   101    52 Tu  1     .       -    CDS     109294 -    111003   1387  ## LF82_3356 uncharacterized protein yich
                               -    Prom    111029 -    111088    1.8 
   102    53 Tu  1     .       -    CDS     111124 -    112515   1749  ## COG2233 Xanthine/uracil permeases
                               -    Prom    112539 -    112598    4.8 
                               +    Prom    112604 -    112663    7.0 
   103    54 Tu  1     .       +    CDS     112795 -    114000   1398  ## COG0786 Na+/glutamate symporter
                               +    Term    114143 -    114173   -1.0 
                               -    Term    114031 -    114068    2.1 
   104    55 Op  1   4/0.290   -    CDS     114166 -    116247   2052  ## COG1200 RecG-like helicase
   105    55 Op  2   5/0.258   -    CDS     116253 -    116942    646  ## COG0566 rRNA methylases
   106    55 Op  3  18/0.000   -    CDS     116949 -    119057   2091  ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases
   107    55 Op  4  25/0.000   -    CDS     119076 -    119351    509  ## COG1758 DNA-directed RNA polymerase, subunit K/omega
   108    55 Op  5     .       -    CDS     119406 -    120029    553  ## COG0194 Guanylate kinase
                               -    Prom    120070 -    120129    4.6 
                               +    Prom    120030 -    120089    2.0 
   109    56 Tu  1     .       +    CDS     120287 -    121969    990  ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)
                               -    Term    121909 -    121946    5.3 
   110    57 Tu  1     .       -    CDS     121966 -    122583    885  ## COG2860 Predicted membrane protein
                               -    Prom    122750 -    122809    4.9 
   111    58 Tu  1     .       -    CDS     122875 -    123699    698  ## JW3620 DNA-damage-inducible protein
                               -    Prom    123759 -    123818    3.9 
   112    59 Tu  1     .       -    CDS     123921 -    124784   1096  ## COG1561 Uncharacterized stress-induced protein
                               -    Prom    124812 -    124871    5.6 
                               +    Prom    124822 -    124881    4.7 
   113    60 Op  1   6/0.194   +    CDS     124911 -    125627    838  ## COG0689 RNase PH
                               +    Term    125636 -    125663    0.1 
   114    60 Op  2     .       +    CDS     125692 -    126333    780  ## COG0461 Orotate phosphoribosyltransferase
                               +    Term    126341 -    126378    7.8 
                               -    Term    126329 -    126364    7.4 
   115    61 Tu  1     .       -    CDS     126370 -    126966    684  ## COG1309 Transcriptional regulator
                               -    Term    126967 -    127002   -0.5 
   116    62 Op  1   5/0.258   -    CDS     127073 -    127531    630  ## COG0756 dUTPase
   117    62 Op  2     .       -    CDS     127509 -    128729   1129  ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase
                               -    Prom    128760 -    128819    2.2 
                               +    Prom    128646 -    128705    2.4 
   118    63 Tu  1     .       +    CDS     128901 -    129569    461  ## COG2003 DNA repair proteins
                               +    Prom    129587 -    129646    3.4 
   119    64 Op  1  16/0.000   +    CDS     129786 -    130022    403  ## PROTEIN SUPPORTED gi|15804178|ref|NP_290217.1| 50S ribosomal protein L28
   120    64 Op  2   5/0.258   +    CDS     130043 -    130210    280  ## PROTEIN SUPPORTED gi|15804177|ref|NP_290216.1| 50S ribosomal protein L33
                               +    Term    130228 -    130269    9.7 
                               +    Prom    130226 -    130285    2.2 
   121    65 Tu  1     .       +    CDS     130308 -    131117    836  ## COG0266 Formamidopyrimidine-DNA glycosylase
                               -    Term    131106 -    131155    4.2 
   122    66 Op  1   6/0.194   -    CDS     131156 -    131635    388  ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19
   123    66 Op  2     .       -    CDS     131643 -    132920   1095  ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase
                               -    Prom    133123 -    133182    9.4 
                               +    Prom    133102 -    133161   10.2 
   124    67 Op  1   5/0.258   +    CDS     133363 -    134397    409  ## COG0859 ADP-heptose:LPS heptosyltransferase
   125    67 Op  2     .       +    CDS     134394 -    135518    660  ## COG0438 Glycosyltransferase
   126    67 Op  3     .       +    CDS     135511 -    136308    459  ## EFER_3921 kinase that phosphorylates core heptose of lipopolysaccharide
   127    67 Op  4   4/0.290   +    CDS     136341 -    137321    159  ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases
   128    67 Op  5   4/0.290   +    CDS     137335 -    138414    446  ## COG0438 Glycosyltransferase
   129    67 Op  6   5/0.258   +    CDS     138414 -    139433    357  ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases
                               +    Prom    139511 -    139570    3.1 
   130    68 Op  1     .       +    CDS     139597 -    140613    270  ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases
   131    68 Op  2     .       +    CDS     140631 -    141329    378  ## EFER_3914 lipopolysaccharide core biosynthesis protein
   132    68 Op  3     .       +    CDS     141401 -    142210    272  ## EFER_3913 lipopolysaccharide core biosynthesis protein
   133    68 Op  4     .       +    CDS     142263 -    143405    469  ## COG0438 Glycosyltransferase
                               +    Term    143420 -    143469   11.3 
                               -    Term    143413 -    143452    7.8 
   134    69 Op  1   6/0.194   -    CDS     143460 -    144677    430  ## COG3307 Lipid A core - O-antigen ligase and related enzymes
   135    69 Op  2  11/0.000   -    CDS     144716 -    145672    897  ## COG0859 ADP-heptose:LPS heptosyltransferase
   136    69 Op  3   6/0.194   -    CDS     145676 -    146722   1004  ## COG0859 ADP-heptose:LPS heptosyltransferase
   137    69 Op  4     .       -    CDS     146802 -    147782   1008  ## COG0451 Nucleoside-diphosphate-sugar epimerases
                               -    Prom    147911 -    147970    2.6 
                               +    Prom    147853 -    147912    3.9 
   138    70 Op  1   9/0.032   +    CDS     147996 -    149192   1590  ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes
   139    70 Op  2   5/0.258   +    CDS     149202 -    150227   1066  ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
                               +    Term    150237 -    150267    3.0 
                               +    Prom    150237 -    150296    5.7 
   140    71 Tu  1     .       +    CDS     150469 -    151500    535  ## COG0463 Glycosyltransferases involved in cell wall biogenesis
                               -    Term    151444 -    151485   -0.5 
   141    72 Op  1   3/0.581   -    CDS     151487 -    152446    764  ## COG2861 Uncharacterized protein conserved in bacteria
   142    72 Op  2   4/0.290   -    CDS     152450 -    153709   1334  ## COG4942 Membrane-bound metallopeptidase
   143    72 Op  3     .       -    CDS     153743 -    155287   1755  ## COG0696 Phosphoglyceromutase
                               -    Prom    155318 -    155377    4.2 
                               +    Prom    155433 -    155492    5.1 
   144    73 Tu  1     .       +    CDS     155532 -    155963    429  ## COG0607 Rhodanese-related sulfurtransferase
                               +    Prom    155974 -    156033    2.4 
   145    74 Op  1   9/0.032   +    CDS     156105 -    156356    317  ## COG0695 Glutaredoxin and related proteins
   146    74 Op  2   7/0.097   +    CDS     156419 -    156886    529  ## COG1952 Preprotein translocase subunit SecB
   147    74 Op  3   6/0.194   +    CDS     156886 -    157905   1075  ## COG0240 Glycerol-3-phosphate dehydrogenase
                               +    Term    157931 -    157972    6.7 
   148    75 Tu  1     .       +    CDS     157985 -    158806    886  ## COG1045 Serine acetyltransferase
   149    76 Tu  1     .       -    CDS     158859 -    159332    426  ## COG0219 Predicted rRNA methylase (SpoU class)
Predicted protein(s)
>gi|223713513|gb|ACDM01000085.1| GENE     1       293  -       985    567    230 aa, chain + ## HITS:1  COG:ZyieP KEGG:ns NR:ns ## COG: ZyieP COG2186 # Protein_GI_number: 15804355 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 EDL933 # 1     230       1     230     230     461  100.0  1e-130
MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELGEQFGVSRTAVREAVKT
LTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQVIDHFLVMRICLEPQACL
LAATVGTAEQKAHLNTLMAEMAALKENFRRERWIEVDMAWHEHIYEMSANPFLTSFASLF
HSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAFKACQALLRSPDK
>gi|223713513|gb|ACDM01000085.1| GENE     2      1008  -      2435    847    475 aa, chain + ## HITS:1  COG:yieO KEGG:ns NR:ns ## COG: yieO COG0477 # Protein_GI_number: 16131622 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     475       1     475     475     831  100.0  0
MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVA
MLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVFRVIQGIGGAMMMPVA
RLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATWHWIFLINIPIGIAGLL
YARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELFGEKIVASWIALTVIVTSIGLLL
LYILHARRTPNPLISLDLFKTRTFSIGIVGNIATRLGTGCVPFLMPLMLQVGFGYQAFIA
GCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGITVIIGLMIAQFSLQSPAMAIWMLILP
LFILGMAMSTQFTAMNTITLADLTDDNASSGNSVLAVTQQLSISLGVAVSAAVLRVYEGM
EGTTTVEQFHYTFITMGIITVASAAMFMLLKTTDGNNLIKRQRKSKPNRVPSESE
>gi|223713513|gb|ACDM01000085.1| GENE     3      2401  -      3384    850    327 aa, chain - ## HITS:1  COG:ECs4695 KEGG:ns NR:ns ## COG: ECs4695 COG1609 # Protein_GI_number: 15833949 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     327       4     330     330     656  100.0  0
MKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIG
MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC
TETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIACI
TGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVF
TGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDV
LIHRITQPTLQQQRLQLTPILMERGSA
>gi|223713513|gb|ACDM01000085.1| GENE     4      3397  -      4341    799    314 aa, chain - ## HITS:1  COG:ECs4694 KEGG:ns NR:ns ## COG: ECs4694 COG0524 # Protein_GI_number: 15833948 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 6     314       1     309     309     529  100.0  1e-150
MDIPNMQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSG
ANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAG
ANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPD
ELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNG
EGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV
PWREEIDAFLDRQR
>gi|223713513|gb|ACDM01000085.1| GENE     5      4452  -      5342   1179    296 aa, chain - ## HITS:1  COG:ECs4693 KEGG:ns NR:ns ## COG: ECs4693 COG1879 # Protein_GI_number: 15833947 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     296       1     296     296     493  100.0  1e-139
MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV
VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG
EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN
VLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD
GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ
>gi|223713513|gb|ACDM01000085.1| GENE     6      5367  -      6332   1267    321 aa, chain - ## HITS:1  COG:ECs4692 KEGG:ns NR:ns ## COG: ECs4692 COG1172 # Protein_GI_number: 15833946 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     321       1     321     321     481  100.0  1e-135
MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMA
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA
KGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMG
IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
YQMIVKAVVILLAVLVDNKKQ
>gi|223713513|gb|ACDM01000085.1| GENE     7      6337  -      7842   1798    501 aa, chain - ## HITS:1  COG:rbsA KEGG:ns NR:ns ## COG: rbsA COG1129 # Protein_GI_number: 16131617 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Escherichia coli K12 # 1     501       1     501     501     967  100.0  0
MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGT
LLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYA
EADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL
FRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGR
KLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG
ALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS
RAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILD
EPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTRE
QATQEVLMAAAVGKLNRVNQE
>gi|223713513|gb|ACDM01000085.1| GENE     8      7850  -      8269    423    139 aa, chain - ## HITS:1  COG:rbsD KEGG:ns NR:ns ## COG: rbsD COG1869 # Protein_GI_number: 16131616 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Escherichia coli K12 # 1     139      13     151     151     256  100.0  8e-69
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN
EMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI
RSGECSPYANIILCAGVTF
>gi|223713513|gb|ACDM01000085.1| GENE     9      8436  -     10304   1764    622 aa, chain - ## HITS:1  COG:ECs4689 KEGG:ns NR:ns ## COG: ECs4689 COG3158 # Protein_GI_number: 15833943 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Escherichia coli O157:H7 # 1     622       1     622     622    1177   99.0  0
MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLL
IFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVIT
PAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLIL
AGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK
FPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLIIAALATVIA
SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWMLYVAVVIVIVSFEHS
SNLAAAYGIAVTGTMVLTSILSTTVARQNWHWNKYFVALILIAFLCVDIPLFTANLDKLL
SGGWLPLSLGTVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM
SRAINVIPFALMHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASY
GWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLILGKRPWYLRLRGKLYLLLQRNAL
RAPDQFEIPPNRVIELGTQVEI
>gi|223713513|gb|ACDM01000085.1| GENE    10     10527  -     12023   1445    498 aa, chain + ## HITS:1  COG:yieN KEGG:ns NR:ns ## COG: yieN COG0714 # Protein_GI_number: 16131614 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Escherichia coli K12 # 1     498       9     506     506     947  100.0  0
MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK
FAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG
PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV
QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLD
KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDV
LMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIRLGGIFSRRQQYQLPVNVTAS
TLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHL
VVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR
IEASLQDVGAQIRQAQQC
>gi|223713513|gb|ACDM01000085.1| GENE    11     12017  -     13468   1122    483 aa, chain + ## HITS:1  COG:ECs4687 KEGG:ns NR:ns ## COG: ECs4687 COG2425 # Protein_GI_number: 15833941 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Escherichia coli O157:H7 # 1     473       1     473     483     890   99.0  0
MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSR
LKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTI
TSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAA
GRLWDMSAGQLKRGDYQLIVKYGEFLNEHPELKRLAEQLGRSREAKSIPRNDAQMETFRT
MVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESW
REKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYI
MLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVIS
DFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRR
WRR
>gi|223713513|gb|ACDM01000085.1| GENE    12     13473  -     14465   1200    330 aa, chain - ## HITS:1  COG:asnA KEGG:ns NR:ns ## COG: asnA COG2502 # Protein_GI_number: 16131612 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Escherichia coli K12 # 1     330       1     330     330     657  100.0  0
MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVK
ALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWE
RVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIHFVHSQELLSRYPDL
DAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWN
PVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRL
TMLLLQLPHIGQVQCGVWPAAVRESVPSLL
>gi|223713513|gb|ACDM01000085.1| GENE    13     14617  -     15075    498    152 aa, chain + ## HITS:1  COG:ECs4685 KEGG:ns NR:ns ## COG: ECs4685 COG1522 # Protein_GI_number: 15833939 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     152       1     152     152     296  100.0  8e-81
MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVS
PKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQ
HVLINKIQTIDEIQSTETLIVLQNPIMRTIKP
>gi|223713513|gb|ACDM01000085.1| GENE    14     15165  -     15608    573    147 aa, chain + ## HITS:1  COG:mioC KEGG:ns NR:ns ## COG: mioC COG0716 # Protein_GI_number: 16131610 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli K12 # 1     147       1     147     147     280  100.0  5e-76
MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVISSTHGAG
DIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGET
LKINILDHDIPEDPAEEWLGSWVNLLK
>gi|223713513|gb|ACDM01000085.1| GENE    15     15987  -     17876   1955    629 aa, chain + ## HITS:1  COG:gidA KEGG:ns NR:ns ## COG: gidA COG0445 # Protein_GI_number: 16131609 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Escherichia coli K12 # 1     629       1     629     629    1248  100.0  0
MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV
KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI
FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS
IPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV
PCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPE
GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK
FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL
GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRL
KSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAE
QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ
ASRISGVTPAAISILLVWLKKQGMLRRSA
>gi|223713513|gb|ACDM01000085.1| GENE    16     17940  -     18563    559    207 aa, chain + ## HITS:1  COG:ECs4682 KEGG:ns NR:ns ## COG: ECs4682 COG0357 # Protein_GI_number: 15833936 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Escherichia coli O157:H7 # 1     207       1     207     207     411  100.0  1e-115
MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV
APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPV
QSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEY
QVESVVKLQVPALDGERHLVVIKANKI
>gi|223713513|gb|ACDM01000085.1| GENE    17     19180  -     19560    192    126 aa, chain + ## HITS:1  COG:ECs4681 KEGG:ns NR:ns ## COG: ECs4681 COG3312 # Protein_GI_number: 15833935 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit I # Organism: Escherichia coli O157:H7 # 1     126       5     130     130     156   99.0  7e-39
MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGGLAVFLPNVLFMIFAWR
HQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALVVLKAVFLPLIVTWVLVLVVQILAPA
VINNKG
>gi|223713513|gb|ACDM01000085.1| GENE    18     19569  -     20384    820    271 aa, chain + ## HITS:1  COG:STM3871 KEGG:ns NR:ns ## COG: STM3871 COG0356 # Protein_GI_number: 16767155 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Salmonella typhimurium LT2 # 1     271       1     271     271     467   96.0  1e-131
MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINIDSMFFSVVLGLLFLVLF
RSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIAPLALTIFVWVFLMNLMDL
LPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTL
QPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVP
WAIFHILIITLQAFIFMVLTIVYLSMASEEH
>gi|223713513|gb|ACDM01000085.1| GENE    19     20431  -     20670    374     79 aa, chain + ## HITS:1  COG:BU003 KEGG:ns NR:ns ## COG: BU003 COG0636 # Protein_GI_number: 15616633 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Buchnera sp. APS # 1      79       1      79      79      97   83.0  5e-21
MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLV
DAIPMIAVGLGLYVMFAVA
>gi|223713513|gb|ACDM01000085.1| GENE    20     20732  -     21202    567    156 aa, chain + ## HITS:1  COG:ECs4678 KEGG:ns NR:ns ## COG: ECs4678 COG0711 # Protein_GI_number: 15833932 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Escherichia coli O157:H7 # 1     156       1     156     156     201  100.0  5e-52
MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKAS
ATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL
RKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL
>gi|223713513|gb|ACDM01000085.1| GENE    21     21217  -     21750    587    177 aa, chain + ## HITS:1  COG:ECs4677 KEGG:ns NR:ns ## COG: ECs4677 COG0712 # Protein_GI_number: 15833931 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Escherichia coli O157:H7 # 1     177       1     177     177     300  100.0  8e-82
MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAES
FIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQ
QLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERLADVLQS
>gi|223713513|gb|ACDM01000085.1| GENE    22     21763  -     23304   1803    513 aa, chain + ## HITS:1  COG:ECs4676 KEGG:ns NR:ns ## COG: ECs4676 COG0056 # Protein_GI_number: 15833930 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Escherichia coli O157:H7 # 1     513       1     513     513     986  100.0  0
MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY
AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP
LDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI
DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY
AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLER
AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF
NAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ
LDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA
PLMQEINQTGGYNDEIEGKLKGILDSFKATQSW
>gi|223713513|gb|ACDM01000085.1| GENE    23     23355  -     24218   1011    287 aa, chain + ## HITS:1  COG:ECs4675 KEGG:ns NR:ns ## COG: ECs4675 COG0224 # Protein_GI_number: 15833929 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Escherichia coli O157:H7 # 1     287       1     287     287     555  100.0  1e-158
MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGN
LEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGS
KGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMS
QVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQ
AARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV
>gi|223713513|gb|ACDM01000085.1| GENE    24     24245  -     25627   1696    460 aa, chain + ## HITS:1  COG:ECs4674 KEGG:ns NR:ns ## COG: ECs4674 COG0055 # Protein_GI_number: 15833928 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Escherichia coli O157:H7 # 1     460       1     460     460     890  100.0  0
MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSS
DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEEL
SNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV
GERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP
ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG
VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVS
LKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL
>gi|223713513|gb|ACDM01000085.1| GENE    25     25648  -     26067    486    139 aa, chain + ## HITS:1  COG:atpC KEGG:ns NR:ns ## COG: atpC COG0355 # Protein_GI_number: 16131599 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Escherichia coli K12 # 1     139       1     139     139     246  100.0  1e-65
MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHE
EFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASA
ELAKAIAQLRVIELTKKAM
>gi|223713513|gb|ACDM01000085.1| GENE    26     26420  -     27790   1693    456 aa, chain + ## HITS:1  COG:ECs4672 KEGG:ns NR:ns ## COG: ECs4672 COG1207 # Protein_GI_number: 15833926 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Escherichia coli O157:H7 # 1     456       1     456     456     890  100.0  0
MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGD
LLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDA
KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADM
KRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ
SEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKN
SVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK
AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT
IAAGTTVTRNVGENALAISRVPQTQKEGWRRPVKKK
>gi|223713513|gb|ACDM01000085.1| GENE    27     27952  -     29781   2335    609 aa, chain + ## HITS:1  COG:glmS KEGG:ns NR:ns ## COG: glmS COG0449 # Protein_GI_number: 16131597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Escherichia coli K12 # 1     609       1     609     609    1196  100.0  0
MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE
EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV
SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV
IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ
YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA
CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL
RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL
SRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIA
LEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRAR
GGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPR
NLAKSVTVE
>gi|223713513|gb|ACDM01000085.1| GENE    28     30095  -     31135   1241    346 aa, chain + ## HITS:1  COG:pstS KEGG:ns NR:ns ## COG: pstS COG0226 # Protein_GI_number: 16131596 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     346       1     346     346     632  100.0  0
MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKWADTYQKETGNKVNYQG
IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVL
DGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEE
WKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGK
PVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLK
FFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY
>gi|223713513|gb|ACDM01000085.1| GENE    29     31222  -     32181   1279    319 aa, chain + ## HITS:1  COG:ECs4663 KEGG:ns NR:ns ## COG: ECs4663 COG0573 # Protein_GI_number: 15833917 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Escherichia coli O157:H7 # 1     319       1     319     319     533   99.0  1e-151
MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTK
EWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLA
AIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGALFSGSAFGIGILAAGVILAIM
IIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALG
ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFVITFI
VLAASKFMIMRLAKNEGAR
>gi|223713513|gb|ACDM01000085.1| GENE    30     32181  -     33071   1151    296 aa, chain + ## HITS:1  COG:pstA KEGG:ns NR:ns ## COG: pstA COG0581 # Protein_GI_number: 16131594 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Escherichia coli K12 # 1     296       1     296     296     507  100.0  1e-143
MAMVEMQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITRGIDGM
SLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGIMAGIYLAEYGRKSWLAEV
IRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIALALLQVPIVIRTTENMLKLVP
YSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAIARIAGETAPLLFTALSNQFWST
DMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIITLCVLLLNILARVVFAKNKHG
>gi|223713513|gb|ACDM01000085.1| GENE    31     33254  -     34027    345    257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 11     252       2     239     245 137  36 3e-31
MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMF
ELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK
LSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP
CSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDHTAFMYLGELIEFSNTDDLF
TKPAKKQTEDYITGRYG
>gi|223713513|gb|ACDM01000085.1| GENE    32     34042  -     34767    907    241 aa, chain + ## HITS:1  COG:phoU KEGG:ns NR:ns ## COG: phoU COG0704 # Protein_GI_number: 16131592 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Escherichia coli K12 # 1     241       1     241     241     449  100.0  1e-126
MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMHNQDSDLAKRVIEGDKN
VNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERIGDVADKICRTALEKFSQQ
HQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYREDKKVDQEYEGIVRQLMTYMM
EDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRHVGGDELDKLLAGKDSD
K
>gi|223713513|gb|ACDM01000085.1| GENE    33     35053  -     35889    635    278 aa, chain + ## HITS:1  COG:bglG KEGG:ns NR:ns ## COG: bglG COG3711 # Protein_GI_number: 16131591 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli K12 # 1     278       1     278     278     524  100.0  1e-149
MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSSGIEKEYALSSHELNGR
LSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHCQFAIKRFQQNVLLPNPLL
WDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEVGFIAMHLVSAQMSGNMEDVAGVTQLM
REMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRILEHASINDSDESLQQAVKQNYPQA
WQCAERIAIFIGLQYQRKISPAEIMFLAINIERVRKEH
>gi|223713513|gb|ACDM01000085.1| GENE    34     36023  -     37900   1335    625 aa, chain + ## HITS:1  COG:bglF_2 KEGG:ns NR:ns ## COG: bglF_2 COG1263 # Protein_GI_number: 16131590 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 91     451       1     361     361     686  100.0  0
MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQ
VVIGNHVADVFLAVNSVAGLDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGI
LKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGGNPFTAMVIGGA
LVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPS
AIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIF
VMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAA
LTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIP
STGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGIC
SPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDD
GVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNS
DDFTDVLPHGTAQISAGEPLLSIIR
>gi|223713513|gb|ACDM01000085.1| GENE    35     37919  -     39331   1165    470 aa, chain + ## HITS:1  COG:bglB KEGG:ns NR:ns ## COG: bglB COG2723 # Protein_GI_number: 16131589 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1     470       1     470     470     993   99.0  0
MKAFPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAID
FYHRYPEDIALFAEMGFTCLRISIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKP
LVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQHKVALWLTFNEINMSLHAP
FTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLLPEAKIGNMLLGGLVYPLTCQPQD
MLQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVYFISFSYY
MTGCVSHDESINKNAQGNILNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQKPLFIV
ENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIADGVDIMGYTSWGPIDLVSASHSQ
MSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRGLSLKKITIKAP
>gi|223713513|gb|ACDM01000085.1| GENE    36     39400  -     41016   1537    538 aa, chain + ## HITS:1  COG:yieC KEGG:ns NR:ns ## COG: yieC COG4580 # Protein_GI_number: 16131588 # Func_class: G Carbohydrate transport and metabolism # Function: Maltoporin (phage lambda and maltose receptor) # Organism: Escherichia coli K12 # 1     538       1     538     538    1016  100.0  0
MFRRNLITSAILLMAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKKKYT
PATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDFSKFVK
DEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNENGKRVDA
VVMMDGNVGQQYSTGWFGDNAGGENYMQFSDMYVTTKGFLPFAPEADFWVGKHGAPKIEI
QMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQINTNTIDLRYK
DIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSLTQKFDKGGFNEFS
FLVANNSIASNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGEAYIGDHFIVANAIVY
SFGNDIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYFTQQNKDANSNKFNESGY
KTTLFHTFKVNTSMLTSRPEIRFYATYIKALENELDGFTFEDNKDDQFAVGAQAEIWW
>gi|223713513|gb|ACDM01000085.1| GENE    37     41043  -     42212   1144    389 aa, chain + ## HITS:1  COG:yieL KEGG:ns NR:ns ## COG: yieL COG2382 # Protein_GI_number: 16131587 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Escherichia coli K12 # 1     389      12     400     400     766  100.0  0
MNIKIAALTLAIASGISAQWAIAADMPASPAPTIPVKQYVTQVNADNSVTFRYFAPGAKN
VSVVVGVPVPDNIHPMTKDEAGVWSWRTPILKGNLYEYFFNVDGVRSIDTGTAMTNPQRQ
VNSSMILVPGSYLDTRSVAHGDLIAITYHSNALQSERQMYVWTPPGYTGMGEPLPVLYFY
HGFGDTGRSAIDQGRIPQIMDNLLAEGKIKPMLVVIPDTETDAKGIIPEDFVPQERRKVF
YPLNAKAADRELMNDIIPLISKRFNVRKDADGRALAGLSQGGYQALVSGMNHLESFGWLA
TFSGVTTTTVPDEGVAARLNDPAAINQQLRNFTVVVGDKDVVTGKDIAGLKTELEQKKIN
FDYQEYPGLNHEMDVWRPAYAAFVQKLFK
>gi|223713513|gb|ACDM01000085.1| GENE    38     42227  -     42949    801    240 aa, chain + ## HITS:1  COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24     232       1     209     213     434  100.0  1e-122
MKLIITEDYQEMSRVAAHHLLGYMSKTRRVNLAITAGSTPKGMYEYLTTLVKGKPWYDNC
YFYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKEENIQKLTIDNYREHDQKLAREGGLD
LVVLGLGADGHFCGNLPNTTHFHEQTVEFPIQGEMVDIVAHGELGGDFSLVPDSYVTMGP
KSIMAAKNLLIIVSGAGKAQALKNVLQGPVTEDVPASVLQLHPSLMVIADKAAAAELALG
>gi|223713513|gb|ACDM01000085.1| GENE    39     43011  -     43598    250    195 aa, chain - ## HITS:1  COG:yieJ KEGG:ns NR:ns ## COG: yieJ COG3196 # Protein_GI_number: 16131585 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     195       1     195     195     376  100.0  1e-104
MTQNIRPLPQFKYHPKPLETGAFEQDKTVECDCCEQQTSVYYSGPFYCVDEVEHLCPWCI
ADGSAAEKFAGSFQDDASIEGVEFEYDEEDEFAGIKNTYPDEMLKELVERTPGYHGWQQE
FWLAHCGDFCVFIGYVGWNDIKDRLDEFANLEEDCENFGIRNSDLAKCLQKGGHCQGYLF
RCLHCGKLRLWGDFS
>gi|223713513|gb|ACDM01000085.1| GENE    40     43647  -     44114    237    155 aa, chain - ## HITS:1  COG:no KEGG:JW3694 NR:ns ## KEGG: JW3694 # Name: yieI # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     155       1     155     155     261  100.0  5e-69
MSVSRRVIHHGLYFAVLGPLIGVLFLVLYIFFAKEPLVLWVIIHPIFLLLSITTGAIPAL
LTGVMVACLPEKIGSQKRYRCLAGGIGGVVITEIYCAVIVHIKGMASSELFENILSGDSL
VVRIIPALLAGVVMSRIITRLPGLDISCPETDSLS
>gi|223713513|gb|ACDM01000085.1| GENE    41     44181  -     44846    640    221 aa, chain - ## HITS:1  COG:yieH KEGG:ns NR:ns ## COG: yieH COG0637 # Protein_GI_number: 16131583 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1     221       1     221     221     468  100.0  1e-132
MSRIEAVFFDCDGTLVDSEVICSRAYVTMFQEFGITLDPEEVFKRFKGVKLYEIIDIVSL
EHGVTLAKTEAEHVYRAEVARLFDSELEAIEGAGALLSAITAPMCVVSNGPNNKMQHSMG
KLNMLHYFPDKLFSGYDIQRWKPDPALMFHAAKAMNVNVENCILVDDSVAGAQSGIDAGM
EVFYFCADPHNKPIVHPKVTTFTHLSQLPELWKARGWDITA
>gi|223713513|gb|ACDM01000085.1| GENE    42     45011  -     46348   1636    445 aa, chain + ## HITS:1  COG:STM3851 KEGG:ns NR:ns ## COG: STM3851 COG2252 # Protein_GI_number: 16767135 # Func_class: R General function prediction only # Function: Permeases # Organism: Salmonella typhimurium LT2 # 1     445      43     487     487     733   96.0  0
MSHQHTTQTSGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDT
SAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWG
AIGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVSIGNL
TSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVV
GHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSI
SSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLVIFLSPLAGMVPGYAAAG
ALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGR
LRDLSPCVIIVALLFILKIVFIDAH
>gi|223713513|gb|ACDM01000085.1| GENE    43     46402  -     46968    744    188 aa, chain - ## HITS:1  COG:ECs4650 KEGG:ns NR:ns ## COG: ECs4650 COG0431 # Protein_GI_number: 15833904 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Escherichia coli O157:H7 # 1     188       1     188     188     364  100.0  1e-101
MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFP
ATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGV
IGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFG
EFIQRVKI
>gi|223713513|gb|ACDM01000085.1| GENE    44     46990  -     47751    544    253 aa, chain - ## HITS:1  COG:yieE KEGG:ns NR:ns ## COG: yieE COG2091 # Protein_GI_number: 16131580 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Escherichia coli K12 # 1     253       1     253     253     518  100.0  1e-147
MERKMATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRGLLAELMFMLYGI
GELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLDMELQRATRGFHSPH
APDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLNDDPRDLQLLPIAGRLK
CAHVNHVEALCDAEDVLVWSVAVTPTIEKLSVWELDGKHGWKSLPDIHSRANNPTSRMMR
FAQLSTVKAFSPN
>gi|223713513|gb|ACDM01000085.1| GENE    45     47896  -     48855    774    319 aa, chain - ## HITS:1  COG:yidZ KEGG:ns NR:ns ## COG: yidZ COG0583 # Protein_GI_number: 16131579 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     319       1     319     319     588  100.0  1e-168
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRINVTPSAVSKSLAKLRAWFDDPLFVNSPL
GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKQIY
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
CVWLRKDHPALHQTWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH
NPKIVWLRETIKNLYASMA
>gi|223713513|gb|ACDM01000085.1| GENE    46     48830  -     50005    956    391 aa, chain - ## HITS:1  COG:yidY KEGG:ns NR:ns ## COG: yidY COG0477 # Protein_GI_number: 16131578 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     391       1     391     391     661  100.0  0
MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGK
VADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILRDTL
DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKE
TRPAAPAASDKPRENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGEY
ATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQVLFLAAGITLAVSPSHAVSLFGITL
ICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVVGIGAWNMLIGI
LIACSIVSLLLIMFVAPGRPVAAHEEIHHHA
>gi|223713513|gb|ACDM01000085.1| GENE    47     50137  -     51384   1092    415 aa, chain - ## HITS:1  COG:tnaB KEGG:ns NR:ns ## COG: tnaB COG0814 # Protein_GI_number: 16131577 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1     415       1     415     415     733  100.0  0
MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLL
LEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL
GYHANPRIVGICTAIFVASVLWLSSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILR
DATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVI
YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFF
GVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWA
VIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKFG
>gi|223713513|gb|ACDM01000085.1| GENE    48     51475  -     52890   1825    471 aa, chain - ## HITS:1  COG:tnaA KEGG:ns NR:ns ## COG: tnaA COG3033 # Protein_GI_number: 16131576 # Func_class: E Amino acid transport and metabolism # Function: Tryptophanase # Organism: Escherichia coli K12 # 1     471       6     476     476     973  100.0  0
MENFKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVT
QSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE
KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI
EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ
REAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV
QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA
FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL
TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV
>gi|223713513|gb|ACDM01000085.1| GENE    49     53428  -     54792   1634    454 aa, chain - ## HITS:1  COG:thdF KEGG:ns NR:ns ## COG: thdF COG0486 # Protein_GI_number: 16131574 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1     454       1     454     454     862  100.0  0
MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSVLD
QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK
LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE
IDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE
AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL
FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR
TGEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLA
EELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK
>gi|223713513|gb|ACDM01000085.1| GENE    50     54898  -     56544   2024    548 aa, chain - ## HITS:1  COG:yidC KEGG:ns NR:ns ## COG: yidC COG0706 # Protein_GI_number: 16131573 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Escherichia coli K12 # 1     548       1     548     548    1064  100.0  0
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL
ISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP
DNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNV
QNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
NENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT
GAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII
ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPL
GGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL
HSREKKKS
>gi|223713513|gb|ACDM01000085.1| GENE    51     56768  -     57094    229    108 aa, chain - ## HITS:1  COG:rnpA KEGG:ns NR:ns ## COG: rnpA COG0594 # Protein_GI_number: 16131572 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Escherichia coli K12 # 1     108      12     119     119     190   99.0  5e-49
MLTPSQFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVRRAHERNRIKRLTRE
SFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRLARGS
>gi|223713513|gb|ACDM01000085.1| GENE    52     57144  -     57284    228     46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15804297|ref|NP_290336.1| 50S ribosomal protein L34 [Escherichia coli O157:H7 EDL933] # 1      46       1      46      46 92  100 1e-17
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
>gi|223713513|gb|ACDM01000085.1| GENE    53     57891  -     59294   1236    467 aa, chain + ## HITS:1  COG:dnaA KEGG:ns NR:ns ## COG: dnaA COG0593 # Protein_GI_number: 16131570 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Escherichia coli K12 # 1     467       1     467     467     931  100.0  0
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN
GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNV
PAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTH
LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF
ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE
TRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVR
EALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNH
SLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS
>gi|223713513|gb|ACDM01000085.1| GENE    54     59299  -     60399   1216    366 aa, chain + ## HITS:1  COG:ECs4636 KEGG:ns NR:ns ## COG: ECs4636 COG0592 # Protein_GI_number: 15833890 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Escherichia coli O157:H7 # 1     366       1     366     366     729  100.0  0
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV
QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD
DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC
SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR
FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE
EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV
VMPMRL
>gi|223713513|gb|ACDM01000085.1| GENE    55     60399  -     61472    746    357 aa, chain + ## HITS:1  COG:ECs4635 KEGG:ns NR:ns ## COG: ECs4635 COG1195 # Protein_GI_number: 15833889 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Escherichia coli O157:H7 # 1     357       1     357     357     712  100.0  0
MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV
IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE
GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE
LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER
DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL
IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD
>gi|223713513|gb|ACDM01000085.1| GENE    56     61501  -     63915   3036    804 aa, chain + ## HITS:1  COG:ECs4634 KEGG:ns NR:ns ## COG: ECs4634 COG0187 # Protein_GI_number: 15833888 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Escherichia coli O157:H7 # 1     804       1     804     804    1588  100.0  0
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII
VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT
EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI
FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY
LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG
KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR
YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF
EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE
QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
>gi|223713513|gb|ACDM01000085.1| GENE    57     64155  -     64553    547    132 aa, chain + ## HITS:1  COG:ECs4633 KEGG:ns NR:ns ## COG: ECs4633 COG3753 # Protein_GI_number: 15833887 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     132       4     135     135     214   98.0  3e-56
MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQGNQS
VSGEQLESALGTNAVSDLGQKLGVDTSTASILLAEQLPKIIDALSPQGEVSPQANNDLLS
AGMELLKGKLFR
>gi|223713513|gb|ACDM01000085.1| GENE    58     64668  -     65480   1215    270 aa, chain + ## HITS:1  COG:yidA KEGG:ns NR:ns ## COG: yidA COG0561 # Protein_GI_number: 16131565 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1     270       1     270     270     525  100.0  1e-149
MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME
QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANR
DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTV
LKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAMDNA
IPSVKEVANFVTKSNLEDGVAFAIEKYVLN
>gi|223713513|gb|ACDM01000085.1| GENE    59     65526  -     66182    267    218 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_4205 NR:ns ## KEGG: EcE24377A_4205 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     218      36     253     253     442   99.0  1e-123
MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT
KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYY
YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY
YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
>gi|223713513|gb|ACDM01000085.1| GENE    60     66460  -     67149    670    229 aa, chain + ## HITS:1  COG:STM3830 KEGG:ns NR:ns ## COG: STM3830 COG2186 # Protein_GI_number: 16767115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1     229       1     229     229     409   94.0  1e-114
MTLNKTDRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFRSLMAKRLIEM
KRYRGAFVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVRNLVEPAIARWAAERATSS
DLAQIESALNEMIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLSIAISSLQRAVFERT
WMGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT
>gi|223713513|gb|ACDM01000085.1| GENE    61     67146  -     68024    549    292 aa, chain + ## HITS:1  COG:dgoK KEGG:ns NR:ns ## COG: dgoK COG3734 # Protein_GI_number: 16131561 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-galactonokinase # Organism: Escherichia coli K12 # 1     292       1     292     292     555   99.0  1e-158
MTARYIAIDWGSTNLRAWLYQGDHCLESRQSEAGVTRLNGKSPAAVLAEVTTDWREEKTL
VVMAGMVGSNVGWKVAPYLSVPACFSSIGEQLTSVGDNIWIIPGLCVSHDDNHNVMRGEE
TQLIGARALAPSSLYVMPGTHCKWVQADSQQINDFRTVMTGELHHLLLNHSLIGAGLPPQ
ENSADAFTAGLERGLNTPAILPQLFEVRASHVLGTLPREQVSEFLSGLLIGAEVASMRDY
VAHQHAITLVAGTSLTARYQQAFQAMGCDVTAVAGDTAFQAGIRSIAHAVAN
>gi|223713513|gb|ACDM01000085.1| GENE    62     68008  -     68625    547    205 aa, chain + ## HITS:1  COG:RSc2752 KEGG:ns NR:ns ## COG: RSc2752 COG0800 # Protein_GI_number: 17547471 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Ralstonia solanacearum # 1     201       3     203     213     235   62.0  4e-62
MQWQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKA
LIGAGTVLKPEQVDALARMSCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEA
GAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLY
RAGQSVERTAQQAAAFVKAYREAVQ
>gi|223713513|gb|ACDM01000085.1| GENE    63     68622  -     69770   1595    382 aa, chain + ## HITS:1  COG:dgoA_2 KEGG:ns NR:ns ## COG: dgoA_2 COG4948 # Protein_GI_number: 16131560 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1     382      96     477     477     799  100.0  0
MKITKITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAAVHELGDYLIGQDPSRI
NDLWQVMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWV
GGDRPADVIDGIKTLREIGFDTFKLNGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEF
GLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAEYYPKLAAQTHIPLAAGERMFSR
FDFKRVLEAGGISILQPDLSHAGGITECYKIAGMAEAYDVTLAPHCPLGPIALAACLHID
FVSYNAVLQEQSMGIHYNKGAELLDFVKNKEDFSMVGGFFKPLTKPGLGVEIDEAKVIEF
SKNAPDWRNPLWRHEDNSVAEW
>gi|223713513|gb|ACDM01000085.1| GENE    64     69890  -     71182   1432    430 aa, chain + ## HITS:1  COG:dgoT KEGG:ns NR:ns ## COG: dgoT COG0477 # Protein_GI_number: 16131559 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     430      16     445     445     801  100.0  0
MDIPVNAAKPGRRRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAF
AWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAP
AFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIG
IIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHR
KLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVA
DLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSL
VSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYI
LLVGDVKRVG
>gi|223713513|gb|ACDM01000085.1| GENE    65     71179  -     72243    615    354 aa, chain - ## HITS:1  COG:yidS KEGG:ns NR:ns ## COG: yidS COG0644 # Protein_GI_number: 16131558 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1     354       8     361     361     749  100.0  0
MEHFDVAIIGLGPAGSALARKLAGKMQVIALDKKHQCGTEGFSKPCGGLLAPDAQRSFIR
DGLTLPVDVIANPQIFSVKTVDVAASLTRNYQRSYININRHAFDLWMKSLIPASVEVYHD
SLCRKIWREDDKWHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQW
FAEKHPVPFYSCIFDNSITNCYSWSISKDGYFIFGGAYPMKDGQTRFTTLKEKMSAFQFQ
FGKTVKSEKCTVLFPSRWQDFVCGKDNAFLIGEAAGFISASSLEGISYALDSTDILRSVL
LKQPEKLNTAYWRATRKLRLKLFGKIVKSRCLTAPALRKWIMRSGVAHIPQLKD
>gi|223713513|gb|ACDM01000085.1| GENE    66     72344  -     73558    904    404 aa, chain + ## HITS:1  COG:no KEGG:JW5860 NR:ns ## KEGG: JW5860 # Name: yidR # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     404       1     404     404     815  100.0  0
MKQITFAPRNHLLTNTNTWTPDSQWLVFDVRPSGASFTGETIERVNIHTGEVEVIYRASQ
GAHVGVVTVHPKSEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTP
GVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQKQHPREYS
GSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIVELPQ
DEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQI
AFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVLDNRIACAHAQ
SGEVEYLTEHHANSPSADAVVFSPDGQWLAWMEGGQLWITETDR
>gi|223713513|gb|ACDM01000085.1| GENE    67     73560  -     73823    296     87 aa, chain - ## HITS:1  COG:ECs4628 KEGG:ns NR:ns ## COG: ECs4628 COG5645 # Protein_GI_number: 15833882 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 1      87      49     135     135     167   98.0  5e-42
MMSHTGGKEGTYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSS
VRSRVEKSEANAQATNAVIPPARMPDN
>gi|223713513|gb|ACDM01000085.1| GENE    68     74198  -     74611    587    137 aa, chain + ## HITS:1  COG:ECs4627 KEGG:ns NR:ns ## COG: ECs4627 COG0071 # Protein_GI_number: 15833881 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Escherichia coli O157:H7 # 1     137       1     137     137     256  100.0  7e-69
MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESE
LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYID
LERVIPEAKKPRRIEIN
>gi|223713513|gb|ACDM01000085.1| GENE    69     74723  -     75151    559    142 aa, chain + ## HITS:1  COG:ECs4626 KEGG:ns NR:ns ## COG: ECs4626 COG0071 # Protein_GI_number: 15833880 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Escherichia coli O157:H7 # 1     142       3     144     144     275  100.0  2e-74
MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNHYRITLALAGFRQEDLE
IQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAENMEVSGATFVNGLLHIDLI
RNEPEPIAAQRIAISERPALNS
>gi|223713513|gb|ACDM01000085.1| GENE    70     75347  -     77008   1954    553 aa, chain + ## HITS:1  COG:ECs4625 KEGG:ns NR:ns ## COG: ECs4625 COG2985 # Protein_GI_number: 15833879 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1     553       9     561     561     985  100.0  0
MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLH
VIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLP
VVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRV
IFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE
ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNEN
VLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLG
NAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIG
KLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLIT
VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRII
TPQLLAVLFWSIG
>gi|223713513|gb|ACDM01000085.1| GENE    71     77005  -     77721    666    238 aa, chain - ## HITS:1  COG:yidP KEGG:ns NR:ns ## COG: yidP COG2188 # Protein_GI_number: 16131552 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     238       1     238     238     448  100.0  1e-126
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLTPVL
ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS
>gi|223713513|gb|ACDM01000085.1| GENE    72     78017  -     79633   1842    538 aa, chain + ## HITS:1  COG:glvCm_1 KEGG:ns NR:ns ## COG: glvCm_1 COG1263 # Protein_GI_number: 16132269 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1     447      88     534     534     852   99.0  0
MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTDPNSLFAQIVHIIEEGG
WTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQD
AVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDKKLPVFLGIFQGTSYVVIIAF
LVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYGQFI
FGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHGNSKIFGAVGISLAMYFTAA
PENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVG
NMGGGLIDQVLPQNWIPMFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGRED
AEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDM
SQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEAV
>gi|223713513|gb|ACDM01000085.1| GENE    73     79875  -     80270    319    131 aa, chain + ## HITS:1  COG:glvG KEGG:ns NR:ns ## COG: glvG COG1486 # Protein_GI_number: 16131551 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1     131      82     212     212     278  100.0  1e-75
MAHIRVGKYPMRELDEKIPLRHGVVGQETCGPGGIAYGMRSIGGVLELVDYMEKYSPNAW
MLNYSNPAAIVAEATRRLRPNAKILNICDMPIGIESRMAQIVGLQDRKQMRVRYYGLNHW
WSAISRSFRKG
>gi|223713513|gb|ACDM01000085.1| GENE    74     80270  -     80446    214     58 aa, chain + ## HITS:1  COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 1      58     383     440     440     117  100.0  5e-27
MSQQVAVEKLVVDAWEQRSYQHLWQAITLSKTVPSASVAKAILDELLEANKAYWPELR
>gi|223713513|gb|ACDM01000085.1| GENE    75     80443  -     81336    592    297 aa, chain - ## HITS:1  COG:yidL KEGG:ns NR:ns ## COG: yidL COG2207 # Protein_GI_number: 16131550 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     297      11     307     307     624  100.0  1e-179
MNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIAN
SWVAVYTVQGCGKILLKNGEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMM
DIPVGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKD
PQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN
>gi|223713513|gb|ACDM01000085.1| GENE    76     81503  -     83455   1669    650 aa, chain + ## HITS:1  COG:yidK KEGG:ns NR:ns ## COG: yidK COG4146 # Protein_GI_number: 16131549 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli K12 # 1     565       1     565     571    1021   98.0  0
MNSLQILSFVGFTLLVAVITWWKVRKTDTGSQQGYFLAGRSLKAPVIAASLMLTNLSTEQ
LVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLKRGIATIPDFLEERYDKTTRII
IDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHGAAIWLLVILLGLAGILYAVI
GGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFMQGIEQLTTVHAEKLNSIGGPTD
PLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLAEGQKGALLTAVLKMLDPLVLVLPG
LIAFHLYQDLPKADMAYPTLVNNVLPVPMVGFFGAVLFGAVISTFNGFLNSASTLFSMGI
YRRIINQNAEPQQLVTVGRKFGFFIAIVSVLVAPWIANAPQGLYSWMKQLNGIYNVPLVT
IIIMGFFFPRIPALAAKVAMGIGIISYITINYLVKFDFHFLYVLACTFCINVVVMLVIGF
IKPRATPFTFKDAFAVDMKPWKNVKIASIGILFAMIGVYAGLAEFGGYGTRWLAMISYFI
AAVVIVYLIFDSWRRKVFALIPPTPVHRFVRLHGPDYLPVSTLTSPARGPTTSRQAKTSP
LWGATLRMPAITPVTSANGISTVMTISALASVRRSGTLITGSMGRTILAN
>gi|223713513|gb|ACDM01000085.1| GENE    77     83305  -     84549   1069    414 aa, chain + ## HITS:1  COG:yidJ KEGG:ns NR:ns ## COG: yidJ COG3119 # Protein_GI_number: 16131548 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1     414      84     497     497     871  100.0  0
MGRYFKDAGYHTCYIGKWHLDGHDYFGTGECPPEWDADYWFDGANYLSELTEKEISLWRN
GLNSVEDLQANHIDETFTWAHRISNRAVDFLQQPARADEPFLMVVSYDEPHHPFTCPVEY
LEKYADFYYELGEKAQDDLANKPEHHRLWAQAMPSPVGDDGLYHHPLYFACNDFVDDQIG
RVINALTPEQRENTWVIYTSDHGEMMGAHKLISKGAAMYDDITRIPLIIRSPQGERRQVD
TPVSHIDLLPTMMALADIEKPEILPGENILAVKEPRGVMVEFNRYEIEHDSFGGFIPVRC
WVTDDFKLVLNLFTSDELYDRRNDPNEMHNLIDDIRFADVRSKMHDALLDYMDKIRDPFR
SYQWSLRPWRKDARPRWMGAFRPRPQDGYSPVVRDYDTGLPTQGVKVEEKKQKF
>gi|223713513|gb|ACDM01000085.1| GENE    78     84596  -     85006    344    136 aa, chain - ## HITS:1  COG:no KEGG:B21_03504 NR:ns ## KEGG: B21_03504 # Name: yidI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     136      14     149     149     217  100.0  1e-55
MLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDV
DVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSI
LLIFLIFSFLTGGSLV
>gi|223713513|gb|ACDM01000085.1| GENE    79     85153  -     85500    464    115 aa, chain + ## HITS:1  COG:ECs4617 KEGG:ns NR:ns ## COG: ECs4617 COG2149 # Protein_GI_number: 15833871 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     115       1     115     115     190  100.0  7e-49
MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLC
LFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVLYAG
>gi|223713513|gb|ACDM01000085.1| GENE    80     85490  -     85852    242    120 aa, chain + ## HITS:1  COG:no KEGG:ECO111_4500 NR:ns ## KEGG: ECO111_4500 # Name: yidG # Def: putative inner membrane protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     120       1     120     120     221  100.0  8e-57
MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV
ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA
>gi|223713513|gb|ACDM01000085.1| GENE    81     85849  -     86346    366    165 aa, chain + ## HITS:1  COG:yidF KEGG:ns NR:ns ## COG: yidF COG0641 # Protein_GI_number: 16131544 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1     165       1     165     165     343  100.0  7e-95
MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLIPYLEFDDRGDLTAASV
TAELWGKFLIALFECWVRADISRISIELFDATLQKWCGSENPQPRCDCQACDWHRLCPHA
RQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMELMTMLR
>gi|223713513|gb|ACDM01000085.1| GENE    82     86354  -     87505   1252    383 aa, chain - ## HITS:1  COG:ECs4614 KEGG:ns NR:ns ## COG: ECs4614 COG0477 # Protein_GI_number: 15833868 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 9     383      22     396     396     619  100.0  1e-177
MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG
RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR
HANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA
PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFIL
PIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF
GAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL
MGLLIVLCWLPLATRMSHQGQPV
>gi|223713513|gb|ACDM01000085.1| GENE    83     87818  -     87907    118     29 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MNLVDIAILILKLIVAALQLLDAVLKYLK
>gi|223713513|gb|ACDM01000085.1| GENE    84     88676  -     90364   1773    562 aa, chain + ## HITS:1  COG:ECs4612 KEGG:ns NR:ns ## COG: ECs4612 COG0028 # Protein_GI_number: 15833866 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli O157:H7 # 1     562       1     562     562    1099   98.0  0
MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHE
QGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTD
AFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFE
IETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPT
TMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPN
AKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLIPLVEAQPRAEWHQLVADLQREFPCP
IPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMG
FGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQ
QSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRI
DAEEKVYPMVPPGAANTEMVGE
>gi|223713513|gb|ACDM01000085.1| GENE    85     90368  -     90658    354     96 aa, chain + ## HITS:1  COG:ECs4611 KEGG:ns NR:ns ## COG: ECs4611 COG0440 # Protein_GI_number: 15833865 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1      96       1      96      96     184  100.0  3e-47
MQNTTHDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQ
RLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ
>gi|223713513|gb|ACDM01000085.1| GENE    86     90734  -     91324    785    196 aa, chain + ## HITS:1  COG:ECs4606 KEGG:ns NR:ns ## COG: ECs4606 COG2197 # Protein_GI_number: 15833860 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     196       1     196     196     375  100.0  1e-104
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
GVSNDVELARRMFDGW
>gi|223713513|gb|ACDM01000085.1| GENE    87     91324  -     92826   1216    500 aa, chain + ## HITS:1  COG:uhpB KEGG:ns NR:ns ## COG: uhpB COG3851 # Protein_GI_number: 16131538 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, glucose-6-phosphate specific # Organism: Escherichia coli K12 # 1     500       2     501     501     847  100.0  0
MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFPFGLRLGLMLQCPRGYW
PVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISRYRHQRDWRTLLLQGAALT
AAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWHYLANNTWLPLGPSLVSQPIN
WRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALPIIALAWHYGWQGALIATLMNAI
ALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRLRELNQSLQKELARNQHLAERLLET
EESVRRDVARELHDDIGQTITAIRTQAGIVQRLAADNASVKQSGQLIEQLSLGVYDAVRR
LLGRLRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEWRIDESALSENQRVTLFRVCQE
GLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGSGQQGFGLTGMRERVTALGGT
LHISCLHGTRVSVSLPQRYV
>gi|223713513|gb|ACDM01000085.1| GENE    88     92836  -     94155   1275    439 aa, chain + ## HITS:1  COG:uhpC KEGG:ns NR:ns ## COG: uhpC COG2271 # Protein_GI_number: 16131537 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli K12 # 1     439       2     440     440     810  100.0  0
MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYFTRKSFNAAVPEILANG
VLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSTSLWA
FAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWNTAHNVGGALIPIVMAAAALH
YGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVGEWRHDALEIAQQQEGAGLTRKE
ILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLYMSETLGVDLVTANTAVTMFELGGF
IGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQATCFFTIGFFVFG
PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASLAGWPLAKVLDTWHWSGFFVVISIAA
GISALLLLPFLNAQTPREA
>gi|223713513|gb|ACDM01000085.1| GENE    89     94293  -     95684   1792    463 aa, chain + ## HITS:1  COG:ECs4603 KEGG:ns NR:ns ## COG: ECs4603 COG2271 # Protein_GI_number: 15833857 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 1     463       1     463     463     845  100.0  0
MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTY
GLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSASMGSGS
VSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWNISHNLGGAGAAGVAL
FGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEEDKET
ESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVAIQG
FTLFEAGALVGTLLWGWLSDLANGRRGLVACIALALIIATLGVYQHASNEYIYLASLFAL
GFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPVFGLT
GWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQLTVA
>gi|223713513|gb|ACDM01000085.1| GENE    90     95730  -     97496   1636    588 aa, chain - ## HITS:1  COG:yicP KEGG:ns NR:ns ## COG: yicP COG1001 # Protein_GI_number: 16131535 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Escherichia coli K12 # 1     588       1     588     588    1200  100.0  0
MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIA
GVGAEYTDAPALQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPH
EIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV
TGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL
EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDAL
IRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLSDARKVTVQQVLVK
GEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFALQFTPGKRYRVIDVIHNELIT
HSHSSVYSENGFDRDDVSFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV
IGRSAEEMALAVNQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAA
ARECGPLPDEPFIQMAFLSLPVIPALKLTSQGLFDGEKFAFTTLEVTE
>gi|223713513|gb|ACDM01000085.1| GENE    91     97659  -     99005   1266    448 aa, chain + ## HITS:1  COG:yicO KEGG:ns NR:ns ## COG: yicO COG2252 # Protein_GI_number: 16131534 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli K12 # 1     448      23     470     470     766  100.0  0
MDKKMNNDNTDYVSNESGTLSRLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGA
AQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMG
AIFWGAVGLFLLTLFRIRYWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLV
MIGDLSSHGVLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPD
ISGVIGEVDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKAL
YVDSVSSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAIVPP
YATAGALIFVGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMK
VCTGRWRDLNLCVVVVAALFALKIILVD
>gi|223713513|gb|ACDM01000085.1| GENE    92     99058  -     99510    394    150 aa, chain + ## HITS:1  COG:no KEGG:APECO1_2789 NR:ns ## KEGG: APECO1_2789 # Name: yicN # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     150      10     159     159     290  100.0  9e-78
MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY
LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR
ETEPEMQDINAFQMRYNAFFQPAEGVHWLH
>gi|223713513|gb|ACDM01000085.1| GENE    93     99721  -    100911   1196    396 aa, chain + ## HITS:1  COG:yicM KEGG:ns NR:ns ## COG: yicM COG2814 # Protein_GI_number: 16131532 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1     396      56     451     451     667  100.0  0
MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQS
VTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL
ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA
AVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIR
PVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTL
WGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIG
GYALDNIGLTSPLMLSGTLMLLTALLVTAKVKMKKS
>gi|223713513|gb|ACDM01000085.1| GENE    94    100952  -    101245    261     97 aa, chain - ## HITS:1  COG:no KEGG:SSON_3614 NR:ns ## KEGG: SSON_3614 # Name: not_defined # Def: putative transport protein # Organism: S.sonnei # Pathway: not_defined # 1      97       1      97      97     187  100.0  9e-47
MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKICTPQASLSDEAWEKLM
LSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM
>gi|223713513|gb|ACDM01000085.1| GENE    95    101467  -    102285    784    272 aa, chain + ## HITS:1  COG:nlpA KEGG:ns NR:ns ## COG: nlpA COG1464 # Protein_GI_number: 16131531 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli K12 # 1     272       1     272     272     503  100.0  1e-142
MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGL
DVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSK
KIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQI
MELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKN
AENVKEFLQSYQSPEVAKAAETIFNGGAVPGW
>gi|223713513|gb|ACDM01000085.1| GENE    96    102289  -    103212    697    307 aa, chain - ## HITS:1  COG:yicL KEGG:ns NR:ns ## COG: yicL COG0697 # Protein_GI_number: 16131530 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1     307       1     307     307     499  100.0  1e-141
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGD
KIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLV
RKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPSTLI
ARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYLKGA
QLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVILISMDSRRRARKI
NRPARHK
>gi|223713513|gb|ACDM01000085.1| GENE    97    103323  -    104507    670    394 aa, chain - ## HITS:1  COG:setC KEGG:ns NR:ns ## COG: setC COG0477 # Protein_GI_number: 16131529 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     394       1     394     394     711   99.0  0
MQKTATTPSKILDLTAAAFLLVAFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSA
IMGILVSQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFAST
ANPQMFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAI
AFVVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINM
PLFIIDELHLTDKLAGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASV
LMATTPAVELELQILNAIFLGILCGIGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSV
DGIMVEIWSYHALFWLAIGMLGIAMICLLFIKDI
>gi|223713513|gb|ACDM01000085.1| GENE    98    104889  -    105035     62     48 aa, chain - ## HITS:1  COG:no KEGG:ECB_03541 NR:ns ## KEGG: ECB_03541 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1      48       2      49      49      78  100.0  8e-14
MDDERLKNPPVGSSVLERIRDIHASMRRVYLQVICPPADSQPTVSPLR
>gi|223713513|gb|ACDM01000085.1| GENE    99    105531  -    106913   1222    460 aa, chain + ## HITS:1  COG:yicJ KEGG:ns NR:ns ## COG: yicJ COG2211 # Protein_GI_number: 16131528 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1     460      20     479     479     877  100.0  0
MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAI
SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT
LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL
GFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFN
ILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN
ALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
ISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIIIALFTIVPAICYLLS
AIIAKRYYSLTTHNLKTVMEQLAQGKRRCQQQFTSQEVQN
>gi|223713513|gb|ACDM01000085.1| GENE   100    106923  -    109241   2197    772 aa, chain + ## HITS:1  COG:yicI KEGG:ns NR:ns ## COG: yicI COG1501 # Protein_GI_number: 16131527 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1     772       1     772     772    1625   98.0  0
MKISDGNWLIQPGLNLIHPLQVFEVEQQGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSP
QEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSL
DFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVE
TWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYF
VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL
HVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKEL
QEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACTWYADKLKGLVAMGVDCFKTDFGER
IPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWG
GDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLH
GSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANTRGTPMMRAMMMEFPDDPA
CDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHSFLSLP
VYVRDNTLLALGNNDQRPDYAWHEGTAFHLFNQQDGHEAVCEVPAADGSVIFTLKATRTG
NTITVIGAGEARNWTLCLRNVVKVNGLQGGSQAESEQGLVVKPQGNALTITL
>gi|223713513|gb|ACDM01000085.1| GENE   101    109294  -    111003   1387    569 aa, chain - ## HITS:1  COG:no KEGG:LF82_3356 NR:ns ## KEGG: LF82_3356 # Name: yicH # Def: uncharacterized protein yich # Organism: E.coli_LF82 # Pathway: not_defined # 1     569       1     569     569    1090   99.0  0
MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSDYHLAFGAMDHRFSAPS
HIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTILLENGTLNLTDQTAPLPFK
ADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPEAGKVLGTKAQIQFSAGSLSLNDVPA
TNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADGSWQVENLRMADIRLQSEKSLTD
FFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLSLRNMTFSKDDWQTQEGKLSMNASE
FIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGGMVRTSGNWLRDGKTLILDDAAIAGLE
YTLPKNWQQLWMETTPGWLNSLQLKRFSASRNLIIDIDPDFPWQLTTLDGYGANLTLVTD
HKWGVWSGSANLNAAAATFNRVDVRRPSLALTANSSTVNISELSAFTEKGILEATASVSQ
TPQRQTHISLNGRGVPVNILQQWGWPELPLTGDGNIQLTASGDIQANAPLKPTVSGQLHA
VNAAKQQVTQTMNAGVVSSGEVTSTEPVQ
>gi|223713513|gb|ACDM01000085.1| GENE   102    111124  -    112515   1749    463 aa, chain - ## HITS:1  COG:ECs4530 KEGG:ns NR:ns ## COG: ECs4530 COG2233 # Protein_GI_number: 15833784 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Escherichia coli O157:H7 # 1     463       1     463     463     785  100.0  0
MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQA
LGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKT
GGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTS
IGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNPYLRVASLVIAMAAGYALAWFMG
MLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLMLVFMITSLETIGDITATSDVSEQPV
SGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLI
VLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGL
GVSQQPLILQFAPEWLKNLLSSGIAAGGITAIVLNLIFPPEKQ
>gi|223713513|gb|ACDM01000085.1| GENE   103    112795  -    114000   1398    401 aa, chain + ## HITS:1  COG:gltS KEGG:ns NR:ns ## COG: gltS COG0786 # Protein_GI_number: 16131524 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Escherichia coli K12 # 1     401       1     401     401     619  100.0  1e-177
MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLLVALALLVLKKSMGWEV
NFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVVGLLVMQNAIGIGMASLLG
LDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEVAMACATFGLVLGGLIGGPVA
RYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAG
TAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVSVLGNVSLSLFLAMALMGLKLWELA
SLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAI
TERFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAG
>gi|223713513|gb|ACDM01000085.1| GENE   104    114166  -    116247   2052    693 aa, chain - ## HITS:1  COG:ZrecG KEGG:ns NR:ns ## COG: ZrecG COG1200 # Protein_GI_number: 15804193 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Escherichia coli O157:H7 EDL933 # 1     693      12     704     704    1309   99.0  0
MKGRLLDTVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGV
YATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAAMKNSLATGRRVLAYGEAK
RGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIE
ELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALR
AGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKGKAR
LSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFH
PHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACI
TEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFK
QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT
PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPE
VQRLARHIHERYPQQAKALIERWMPETERYSNA
>gi|223713513|gb|ACDM01000085.1| GENE   105    116253  -    116942    646    229 aa, chain - ## HITS:1  COG:ECs4526 KEGG:ns NR:ns ## COG: ECs4526 COG0566 # Protein_GI_number: 15833780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Escherichia coli O157:H7 # 1     229       1     229     229     447   99.0  1e-125
MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTM
ASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQ
EKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE
AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWSTMQAAG
>gi|223713513|gb|ACDM01000085.1| GENE   106    116949  -    119057   2091    702 aa, chain - ## HITS:1  COG:ECs4525 KEGG:ns NR:ns ## COG: ECs4525 COG0317 # Protein_GI_number: 15833779 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Escherichia coli O157:H7 # 1     702       1     702     702    1414  100.0  0
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMK
LDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFR
KMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKT
ELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHL
YSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQ
SLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHA
CVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRD
DSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKN
LQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTE
EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN
>gi|223713513|gb|ACDM01000085.1| GENE   107    119076  -    119351    509     91 aa, chain - ## HITS:1  COG:ECs4524 KEGG:ns NR:ns ## COG: ECs4524 COG1758 # Protein_GI_number: 15833778 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Escherichia coli O157:H7 # 1      91       1      91      91     112  100.0  2e-25
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
>gi|223713513|gb|ACDM01000085.1| GENE   108    119406  -    120029    553    207 aa, chain - ## HITS:1  COG:gmk KEGG:ns NR:ns ## COG: gmk COG0194 # Protein_GI_number: 16131519 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Escherichia coli K12 # 1     207       1     207     207     398  100.0  1e-111
MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD
EFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARS
IFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLK
TIIRAERLRMSRQKQRHDALISKLLAD
>gi|223713513|gb|ACDM01000085.1| GENE   109    120287  -    121969    990    560 aa, chain + ## HITS:1  COG:yicF KEGG:ns NR:ns ## COG: yicF COG0272 # Protein_GI_number: 16131518 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1     560       3     562     562    1056   99.0  0
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELA
TAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
>gi|223713513|gb|ACDM01000085.1| GENE   110    121966  -    122583    885    205 aa, chain - ## HITS:1  COG:yicG KEGG:ns NR:ns ## COG: yicG COG2860 # Protein_GI_number: 16131517 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     205      19     223     223     326  100.0  2e-89
MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVK
HPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVV
AAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVF
GFFARLLALRLKLGLPVFYYSHEGH
>gi|223713513|gb|ACDM01000085.1| GENE   111    122875  -    123699    698    274 aa, chain - ## HITS:1  COG:no KEGG:JW3620 NR:ns ## KEGG: JW3620 # Name: dinD # Def: DNA-damage-inducible protein # Organism: E.coli_J # Pathway: not_defined # 1     274       1     274     274     503   99.0  1e-141
MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDH
FEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFAIQTRRQELAD
DEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQK
AIHQRKGLKKNQKILDHMGSTELAANLFRATQTEEKLKRDGVNSKQQANTTHFDVGSKVM
QTIQELGGTMPEELPTPQVSIKQLENSVKITEKK
>gi|223713513|gb|ACDM01000085.1| GENE   112    123921  -    124784   1096    287 aa, chain - ## HITS:1  COG:yicC KEGG:ns NR:ns ## COG: yicC COG1561 # Protein_GI_number: 16131515 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Escherichia coli K12 # 1     287       1     287     287     456  100.0  1e-128
MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRSRLTRG
KVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMQSDEGEINPVDILRWPGVMAAQE
QDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVTAEVVKVRSHMPEILQW
QRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYNILKKKEAVGR
RLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE
>gi|223713513|gb|ACDM01000085.1| GENE   113    124911  -    125627    838    238 aa, chain + ## HITS:1  COG:ECs4518 KEGG:ns NR:ns ## COG: ECs4518 COG0689 # Protein_GI_number: 15833772 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Escherichia coli O157:H7 # 1     238       1     238     238     416  100.0  1e-116
MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT
AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ
ADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED
SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN
>gi|223713513|gb|ACDM01000085.1| GENE   114    125692  -    126333    780    213 aa, chain + ## HITS:1  COG:pyrE KEGG:ns NR:ns ## COG: pyrE COG0461 # Protein_GI_number: 16131513 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Escherichia coli K12 # 1     213       1     213     213     421  100.0  1e-118
MKPYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDS
GIEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQGRV
MLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERDYNCKVIS
IITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV
>gi|223713513|gb|ACDM01000085.1| GENE   115    126370  -    126966    684    198 aa, chain - ## HITS:1  COG:ECs4516 KEGG:ns NR:ns ## COG: ECs4516 COG1309 # Protein_GI_number: 15833770 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     198      15     212     212     340  100.0  7e-94
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
SLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHALMFEQDR
LQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKY
RPTDDFDARWPLIAAQLQ
>gi|223713513|gb|ACDM01000085.1| GENE   116    127073  -    127531    630    152 aa, chain - ## HITS:1  COG:ECs4515 KEGG:ns NR:ns ## COG: ECs4515 COG0756 # Protein_GI_number: 15833769 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Escherichia coli O157:H7 # 2     152       1     151     151     298  100.0  2e-81
MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELAPGDTTLVPTGLAIHIA
DPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQM
IFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
>gi|223713513|gb|ACDM01000085.1| GENE   117    127509  -    128729   1129    406 aa, chain - ## HITS:1  COG:ECs4514 KEGG:ns NR:ns ## COG: ECs4514 COG0452 # Protein_GI_number: 15833768 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Escherichia coli O157:H7 # 1     406      25     430     430     764   99.0  0
MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSLQAVSGYPV
SDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATPAPVAV
LPAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRILDPLTIVDMAVAHF
SPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGFAIAAAAARRGANVTLVSGPVSL
PTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDEL
TIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQ
GFNSDNNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNRR
>gi|223713513|gb|ACDM01000085.1| GENE   118    128901  -    129569    461    222 aa, chain + ## HITS:1  COG:ECs4513 KEGG:ns NR:ns ## COG: ECs4513 COG2003 # Protein_GI_number: 15833767 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1     222       3     224     224     431   99.0  1e-121
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLT
SEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEER
EIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEP
SKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI
>gi|223713513|gb|ACDM01000085.1| GENE   119    129786  -    130022    403     78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804178|ref|NP_290217.1| 50S ribosomal protein L28 [Escherichia coli O157:H7 EDL933] # 1      78       1      78      78 159  100 6e-38
MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVID
KKGIDTVLAELRARGEKY
>gi|223713513|gb|ACDM01000085.1| GENE   120    130043  -    130210    280     55 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804177|ref|NP_290216.1| 50S ribosomal protein L33 [Escherichia coli O157:H7 EDL933] # 1      55       1      55      55 112  100 1e-23
MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK
>gi|223713513|gb|ACDM01000085.1| GENE   121    130308  -    131117    836    269 aa, chain + ## HITS:1  COG:ECs4510 KEGG:ns NR:ns ## COG: ECs4510 COG0266 # Protein_GI_number: 15833764 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Escherichia coli O157:H7 # 1     269       1     269     269     555   99.0  1e-158
MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLL
LELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMNNGKVLRYTDPRRFGAWLWTKEL
EGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRK
GEPCRVCGTPIVATKHAQRATFYCRQCQK
>gi|223713513|gb|ACDM01000085.1| GENE   122    131156  -    131635    388    159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2     159       3     160     164 154  46 3e-36
MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVELAQQATA
HLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMP
SKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA
>gi|223713513|gb|ACDM01000085.1| GENE   123    131643  -    132920   1095    425 aa, chain - ## HITS:1  COG:ECs4508 KEGG:ns NR:ns ## COG: ECs4508 COG1519 # Protein_GI_number: 15833762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Escherichia coli O157:H7 # 1     425       1     425     425     830   99.0  0
MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRHPLKPGGIMLHSVSVGE
TLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNK
VDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVRRLLRRITLI
AAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQWAPHRPVWIATST
HEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTS
TQVVVGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA
RLEQASGLITVTDATTLVKEVSSLLTDADYRSFYGRHAVEVLYQNQGALQRLLQLLEPYL
PPKTH
>gi|223713513|gb|ACDM01000085.1| GENE   124    133363  -    134397    409    344 aa, chain + ## HITS:1  COG:rfaQ KEGG:ns NR:ns ## COG: rfaQ COG0859 # Protein_GI_number: 16131503 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1     344       1     344     344     715   97.0  0
MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGTGTFDK
IKNALSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHL
APIHGTHIVERNLSVLEPLGITDFYTETTMSYAEDCWKKMRQELDALGVKDHYVVIQPTA
RQIFKCWDNDKFSMVIDALQHRGYQVVLTCGPSADDLACVDEIARGCQTKPITGLAGKTR
FPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQ
KMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL
>gi|223713513|gb|ACDM01000085.1| GENE   125    134394  -    135518    660    374 aa, chain + ## HITS:1  COG:rfaG KEGG:ns NR:ns ## COG: rfaG COG0438 # Protein_GI_number: 16131502 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1     374       1     374     374     747   95.0  0
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPEAFELIRVPVKSHT
NHGRNAEYYAWVQNHLKAHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFFYRLTSR
YRHYAAFERATFEHGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYNAQIP
NSREIYRQKNGITEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPR
KFEVLAEKLGVRSKVHFFSGRNDVSELMAAADLLMHPAYQEAAGIVLLEAIAAGLPVLTT
AVCGYAHYITDANCGTVIAEPFSQEQLNDVLRKALTQSPLRMAWAENARYYADTQDLYSL
PEKAADIITGGLDG
>gi|223713513|gb|ACDM01000085.1| GENE   126    135511  -    136308    459    265 aa, chain + ## HITS:1  COG:no KEGG:EFER_3921 NR:ns ## KEGG: EFER_3921 # Name: waaP # Def: kinase that phosphorylates core heptose of lipopolysaccharide # Organism: E.fergusonii # Pathway: Lipopolysaccharide biosynthesis [PATH:efe00540]; Metabolic pathways [PATH:efe01100] # 1     265       1     265     265     503   93.0  1e-141
MVELEEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELAGKSYFLKWHKGTTLKEI
IKNLLSLRMPVLGADREWHAIHRLHDVGVDTMHGIGFGEKGLNPLTRTSFIITEDLTPTI
SLEDYCADWAVNPPDVHIKRMLIARVATMVRKMHAAGINHRDCYICHFLLHLPFTGREDE
LKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRDIYR
LEIDLLKKARIKAGKIEARTIRKNL
>gi|223713513|gb|ACDM01000085.1| GENE   127    136341  -    137321    159    326 aa, chain + ## HITS:1  COG:ECs4504 KEGG:ns NR:ns ## COG: ECs4504 COG1442 # Protein_GI_number: 15833758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli O157:H7 # 13     322      15     335     335     141   33.0  2e-33
MLKYRNFVAKKKNLYQNEVSYVKNLHIALCFDREFIMPAGVALYSIISNNRHINLHFHLL
ISGIEEKECSAFYELEGPNTSISVYYITDKFDINPDTLVLGIPLSTCLRFLIPEVIDDKI
NKILYLDCDVICNGPLDELVDYNLNADIACVIPDSPEMQERVKKLDYGIEFINYFNAGVM
FINTSEWKKNNITQKALEMINSGKVYRYADQDVLNILLNGRVHYLDKKYNNKTTLSVRCD
EEQKNLPNTIIMHYVTQNKPWYKIFRAQNFDHYFSNSPWKNHKRNLAPSSSEIRLKSKVF
WLEGKYCKAISYYYKYLLVKLFGLKI
>gi|223713513|gb|ACDM01000085.1| GENE   128    137335  -    138414    446    359 aa, chain + ## HITS:1  COG:rfaB KEGG:ns NR:ns ## COG: rfaB COG0438 # Protein_GI_number: 16131499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1     359      11     369     369     714   92.0  0
MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEIFFFCRNDKMDKGWLEGIKYSCSFS
NIRLGFLRRAKHIHALSKWLHDYQPDVVICIDVISCLYAAKARKKSGIDVPVFSWPHFSL
DHKKHAEYITCADYHLAISSGIKQQMISRGVPESTINVIFNPVEAKNSVIPAPGEGETAT
FIYVGRMKFEGQKRVKDLLDGLSQVQGDWKLHVLGDGSDFEKCQAYGRGLNIDDRIVWYG
WQQHPWKLVQQDIKKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPVDIIQPDVN
GHLYQPGDMTGFVALLNKYIAGEIHIAHEKIPASIDKFYQPKYYDRLQKIIISVISRRK
>gi|223713513|gb|ACDM01000085.1| GENE   129    138414  -    139433    357    339 aa, chain + ## HITS:1  COG:rfaI KEGG:ns NR:ns ## COG: rfaI COG1442 # Protein_GI_number: 16131498 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli K12 # 1     339       1     339     339     624   88.0  1e-178
MQQVFFQETEFLNSVIDYNHKIEAENLCLDIAYGTDKNFLFGCGISIASILKYNEGNQLC
FHIFTDYFGDDDRKYFDALARQYKTRIKIYLINGDRLRSLPCTKNWTHAIYFRFVIADYF
FNKAPKVLYLDADIICQGTIEPLINYTFSEHTVAMVVTEGQKDWWAKRAHSLGVAGIANG
YFNSGFLLINTNQWTNERVSARAIAMLSDPEIVKKITHPDQDVLNMLLADKLVYADIKYN
TQFSLNYQLKESFKNPVTNDTVFIHYIGPTKPWHDWAWDYPISQAFMAAKNASPWKDTAL
LKPVNSNQLRYSAKHMLKKKQYIKGFGNYLLYFIKKLKH
>gi|223713513|gb|ACDM01000085.1| GENE   130    139597  -    140613    270    338 aa, chain + ## HITS:1  COG:rfaJ KEGG:ns NR:ns ## COG: rfaJ COG1442 # Protein_GI_number: 16131497 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli K12 # 1     338       1     338     338     602   89.0  1e-172
MNSFPAIEIDKVKAWDFRLIDENTAESLNVAYGVDSNYLDGVGVSITSIVINNRHVNLDF
YIIADVYNDDFFQKVEKLAEQYQLRITLYRINTDNLQCLPCTQVWSRAMYFRLFAFQLLG
VTLNRLLYLDADVVCKGNISQLLHLEFNGAVAAVVRDVDPMQEKAVVRLSDPELRGQYFN
SGVVYLDLKKWTEAKLTEKALSILMSKDSIYKYPDQDVMNVLLKGMTIFLPREFNTIYTI
KSELKDKTHQKYKELIKEDTLLIHYTGATKPWHKWAIYPSVKYYKIALERSPWKDDSPRD
AKSIIEFKKRYKHLLVQHHYISGLIAGVCYLCRKYYRK
>gi|223713513|gb|ACDM01000085.1| GENE   131    140631  -    141329    378    232 aa, chain + ## HITS:1  COG:no KEGG:EFER_3914 NR:ns ## KEGG: EFER_3914 # Name: waaY # Def: lipopolysaccharide core biosynthesis protein # Organism: E.fergusonii # Pathway: Lipopolysaccharide biosynthesis [PATH:efe00540]; Metabolic pathways [PATH:efe01100] # 1     232       1     232     232     416   98.0  1e-115
MIQKNKIKDLVVFTDENNSKYLNVLNDFLSYDINIIKVFRSIDDTKVMLIDTDYGKLILK
VFSPKVKRNERFFKSLLKGDYYERLFEHTQKVRNEGLHSLNDFYLLAERKTLRFVHTYIM
LIEYIDGVELCDIPDIDETLKNKIQQSIRSLHEHGMVSGDPHRGNFIIENGEVRIIDLSG
KRASAQRKAKDRIDLERHYGIKNEVKDLGYYLLVYRKKIRNLMRRLKGKPAR
>gi|223713513|gb|ACDM01000085.1| GENE   132    141401  -    142210    272    269 aa, chain + ## HITS:1  COG:no KEGG:EFER_3913 NR:ns ## KEGG: EFER_3913 # Name: waaZ # Def: lipopolysaccharide core biosynthesis protein # Organism: E.fergusonii # Pathway: not_defined # 1     269       1     269     269     515   99.0  1e-145
MKNIRYIDKKDVENLIESKTSDDVIIFLSGPTSQKTPLSVLQTRDVIAVNGSAQYLLSHN
IIPYIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEHASEEDKRYILQNCLVLRSFY
RREKGGLIKKIKFNILSRIHKELLISVPFSKKGRLVGFCKDINLGYCSCHTVAFAAIQIA
YSLKYARIICSGLDLTGSCSRFYDEDKNPMPSELIRDLFKILPFFRFMRENIEDINIYNL
SDDTAIQYDIIPYMKISEIEEPCVYEKIS
>gi|223713513|gb|ACDM01000085.1| GENE   133    142263  -    143405    469    380 aa, chain + ## HITS:1  COG:STM3714 KEGG:ns NR:ns ## COG: STM3714 COG0438 # Protein_GI_number: 16766999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Salmonella typhimurium LT2 # 1     379       1     379     381     597   74.0  1e-170
MIKKIIFTVTPIFSIPPKGAAAVETWIYQVAKRLSIPVTIACIRNEGYPTYTKVNDHCDI
HYIGFSRVYKRLFQKWTRLDPVPYSQRILNTQPKNTDPKDSVIVIHNSMKLYKQIRSRSP
HAQLVMHLHNAFEPGELDKNAKIIVPSQFLFDFYSEKMPDANIAIVPNGFCSESYEQNNT
EDLRQKLNIDANDTVLLFAGRISPDKGCLMLMEAFNQLNKIQDNLKLVIVGDPFASKKGE
KAEYQKKVLDAAKAIGAQCIMAGGQPPEQMHNYYRLADLVVVPSQVEEAFCMVAVEAMAA
GKPVLASQKGGISEFVLEGITGYHLAEPMTSESILADIKRVLADADRAQIAKNARNFVFS
KYSWEHVTQRFEAQIQDWFG
>gi|223713513|gb|ACDM01000085.1| GENE   134    143460  -    144677    430    405 aa, chain - ## HITS:1  COG:STM3713 KEGG:ns NR:ns ## COG: STM3713 COG3307 # Protein_GI_number: 16766998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Salmonella typhimurium LT2 # 1     405       1     404     404     523   65.0  1e-148
MLTASLALRNKEKWKPYWNKALVFLFIATFFLDGITRYKHIISILMIITVIYQVSRAPGT
FKVLYKNNLFYSVLALSLILLYATFISPDLKISFKEFSNTVLKGFLAYSLLIPALLKDED
NESIGKIVLYSLVTGLGLRCLVELILYIQDYNKGIMPFSTYEHRSISDSMVFLFPALLNL
WLIKKTSYKIAFVIFSAVFLFLLLGTLSRGAWLAVFIVTLLWLILNRQWKLLMLTSIVIS
VAAVGVFTYKGDHAGKDRLIYKLQQTDSSYRYTNGTQGTAWTLIMENPLKGYGYGDDIYH
AIYNKRVVDFPSWKFRQSIGPHNVVLSIWFAAGLAGLLALLYLYGSIIKETANATFKTVV
VTPYNGQLLLFLTLVSFYIIRGNFEEVDLKPIGLIVGLLLAMRNK
>gi|223713513|gb|ACDM01000085.1| GENE   135    144716  -    145672    897    318 aa, chain - ## HITS:1  COG:rfaC KEGG:ns NR:ns ## COG: rfaC COG0859 # Protein_GI_number: 16131492 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1     318       1     318     319     607   94.0  1e-174
MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIR
RWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR
EPLASLFYNRKHHIAKQQHAVERIRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEY
AVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEKRAKRLAEGFAYVEVLP
KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQVVCRAP
DKDLAHLTAETVFNKINS
>gi|223713513|gb|ACDM01000085.1| GENE   136    145676  -    146722   1004    348 aa, chain - ## HITS:1  COG:rfaF KEGG:ns NR:ns ## COG: rfaF COG0859 # Protein_GI_number: 16131491 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1     348       1     348     348     710   99.0  0
MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG
HGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDV
RVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSER
PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQ
AWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSH
KARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNSLLLQEEA
>gi|223713513|gb|ACDM01000085.1| GENE   137    146802  -    147782   1008    326 aa, chain - ## HITS:1  COG:ECs4497 KEGG:ns NR:ns ## COG: ECs4497 COG0451 # Protein_GI_number: 15833751 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1     309       1     309     310     622  100.0  1e-178
MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI
MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY
GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS
MASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRA
ESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT
EYMAWLNRDINVNSQNHSSGIKAAAK
>gi|223713513|gb|ACDM01000085.1| GENE   138    147996  -    149192   1590    398 aa, chain + ## HITS:1  COG:ECs4495 KEGG:ns NR:ns ## COG: ECs4495 COG0156 # Protein_GI_number: 15833749 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Escherichia coli O157:H7 # 1     398       1     398     398     763   98.0  0
MRGDFYQQLANDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPE
LIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFE
TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIAT
DGVFSMDGVIANLKGVCNLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG
TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRD
RLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVV
PKGQARIRTQMSAAHTSEQITRAVEAFTRIGKQLGVIA
>gi|223713513|gb|ACDM01000085.1| GENE   139    149202  -    150227   1066    341 aa, chain + ## HITS:1  COG:tdh KEGG:ns NR:ns ## COG: tdh COG1063 # Protein_GI_number: 16131487 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1     341       1     341     341     707   99.0  0
MKALSKLKAEEGIWMTDVPEPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMV
VGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRPGC
FAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVSGAGPIGIMAA
AVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAELGMTEGFDVGLEMS
GAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAA
LIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSGKVILSWD
>gi|223713513|gb|ACDM01000085.1| GENE   140    150469  -    151500    535    343 aa, chain + ## HITS:1  COG:yibD KEGG:ns NR:ns ## COG: yibD COG0463 # Protein_GI_number: 16131486 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1     343       2     344     344     682   99.0  0
MNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYP
HVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCN
ADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNI
KFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIK
ITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYK
RLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
>gi|223713513|gb|ACDM01000085.1| GENE   141    151487  -    152446    764    319 aa, chain - ## HITS:1  COG:ECs4492 KEGG:ns NR:ns ## COG: ECs4492 COG2861 # Protein_GI_number: 15833746 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 43     319       1     277     277     530   99.0  1e-150
MFPFRRNVLAFAALLVLSSPVLAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI
NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD
SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPVYANRFFEVLSESISQSTLIVYFQH
QWQGWGKQPEAAKFNASAN
>gi|223713513|gb|ACDM01000085.1| GENE   142    152450  -    153709   1334    419 aa, chain - ## HITS:1  COG:ECs4491 KEGG:ns NR:ns ## COG: ECs4491 COG4942 # Protein_GI_number: 15833745 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Membrane-bound metallopeptidase # Organism: Escherichia coli O157:H7 # 1     419       9     427     427     602  100.0  1e-172
MTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQADIAAKERAVRQKQQQ
RASLLAQLKKQEEAISEATRKLRETQNTLNQLNKQIDEMNASIAKLEQQKAAQERSLAAQ
LDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQETIAQLKQTREEVAMQRAEL
EEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLESSIQQGQQQLSELRANESRLRNSI
ARAEAAAKARAEREAREAQAVRDRQKEATRKGTTYKPTESEKSLMSRTGGLGAPRGQAFW
PVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGK
GDMSLYGYNQSALVSVGSQVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR
>gi|223713513|gb|ACDM01000085.1| GENE   143    153743  -    155287   1755    514 aa, chain - ## HITS:1  COG:ECs4490 KEGG:ns NR:ns ## COG: ECs4490 COG0696 # Protein_GI_number: 15833744 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Escherichia coli O157:H7 # 1     514       1     514     514    1008  100.0  0
MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQ
MGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLS
AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGR
VASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV
IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAA
DIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILI
NSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA
LDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA
VAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE
>gi|223713513|gb|ACDM01000085.1| GENE   144    155532  -    155963    429    143 aa, chain + ## HITS:1  COG:ECs4489 KEGG:ns NR:ns ## COG: ECs4489 COG0607 # Protein_GI_number: 15833743 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli O157:H7 # 1     143       1     143     143     276  100.0  6e-75
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLR
QRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFA
QVFVLKEGVAGWAGENLPLVRGK
>gi|223713513|gb|ACDM01000085.1| GENE   145    156105  -    156356    317     83 aa, chain + ## HITS:1  COG:ECs4488 KEGG:ns NR:ns ## COG: ECs4488 COG0695 # Protein_GI_number: 15833742 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli O157:H7 # 1      83       1      83      83     173  100.0  9e-44
MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA
QHIGGCDDLYALDARGGLDPLLK
>gi|223713513|gb|ACDM01000085.1| GENE   146    156419  -    156886    529    155 aa, chain + ## HITS:1  COG:ECs4487 KEGG:ns NR:ns ## COG: ECs4487 COG1952 # Protein_GI_number: 15833741 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecB # Organism: Escherichia coli O157:H7 # 1     155       1     155     155     309  100.0  1e-84
MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVL
RVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSR
GTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA
>gi|223713513|gb|ACDM01000085.1| GENE   147    156886  -    157905   1075    339 aa, chain + ## HITS:1  COG:ECs4486 KEGG:ns NR:ns ## COG: ECs4486 COG0240 # Protein_GI_number: 15833740 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     339       1     339     339     664  100.0  0
MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATLERDRCNAAFLPDVPFP
DTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLL
QDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRVY
SNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPATF
MGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAHRF
GVEMPITEEIYQVLYCGKNAREAALTLLGRARKDERSSH
>gi|223713513|gb|ACDM01000085.1| GENE   148    157985  -    158806    886    273 aa, chain + ## HITS:1  COG:ECs4485 KEGG:ns NR:ns ## COG: ECs4485 COG1045 # Protein_GI_number: 15833739 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1     273       1     273     273     551  100.0  1e-157
MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPA
IAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWL
WNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSV
TLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP
ARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI
>gi|223713513|gb|ACDM01000085.1| GENE   149    158859  -    159332    426    157 aa, chain - ## HITS:1  COG:yibK KEGG:ns NR:ns ## COG: yibK COG0219 # Protein_GI_number: 16131477 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Escherichia coli K12 # 1     157       1     157     157     322   99.0  2e-88
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRH
HDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKI
RIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:27:18 2011
 Seq name: gi|223713512|gb|ACDM01000086.1| Escherichia sp. 4_1_40B cont1.86, whole genome shotgun sequence 
 Length of sequence - 13718 bp
 Number of predicted genes - 13, with homology - 12
 Number of transcription units - 7, operones - 4 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   -    CDS        115 -      1305   1560  ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
     2     1 Op  2   4/0.000   -    CDS       1302 -      2078    692  ## COG2186 Transcriptional regulators
     3     1 Op  3     .       -    CDS       2078 -      3733   1787  ## COG1620 L-lactate permease
                               -    Prom      3854 -      3913    2.5 
                               +    Prom      3568 -      3627    2.7 
     4     2 Tu  1     .       +    CDS       3670 -      3888     62  ## 
                               -    Term      3967 -      4004    7.1 
     5     3 Tu  1     .       -    CDS       4105 -      4467    438  ## ECSP_4596 hypothetical protein
                               -    Prom      4618 -      4677    4.8 
                               +    Prom      4522 -      4581    4.0 
     6     4 Tu  1     .       +    CDS       4752 -      4961    232  ## JW3576 hypothetical protein
     7     5 Op  1   7/0.000   -    CDS       4973 -      5560    415  ## COG3722 Transcriptional regulator
     8     5 Op  2  11/0.000   -    CDS       5560 -      6708   1564  ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases
                               -    Prom      6843 -      6902    2.6 
                               -    Term      6891 -      6931    6.2 
     9     5 Op  3     .       -    CDS       6938 -      8851   2500  ## COG2213 Phosphotransferase system, mannitol-specific IIBC component
                               +    Prom      9088 -      9147    5.2 
    10     6 Op  1     .       +    CDS       9388 -      9750    283  ## EcSMS35_3931 hypothetical protein
    11     6 Op  2     .       +    CDS       9753 -     10889   1064  ## COG1566 Multidrug resistance efflux pump
                               +    Term     10923 -     10957   -0.8 
    12     7 Op  1     .       -    CDS      12494 -     12955     93  ## JW3570 conserved hypothetical protein
    13     7 Op  2     .       -    CDS      12967 -     13716    225  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713512|gb|ACDM01000086.1| GENE     1       115  -      1305   1560    396 aa, chain - ## HITS:1  COG:lldD KEGG:ns NR:ns ## COG: lldD COG1304 # Protein_GI_number: 16131476 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Escherichia coli K12 # 1     396       1     396     396     783  100.0  0
MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSL
ETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAI
KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMR
RYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI
RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGD
IAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMT
LTGAKSISEITQDSLVQGLGKELPAALAPMAKGNAA
>gi|223713512|gb|ACDM01000086.1| GENE     2      1302  -      2078    692    258 aa, chain - ## HITS:1  COG:lldR KEGG:ns NR:ns ## COG: lldR COG2186 # Protein_GI_number: 16131475 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     258       1     258     258     489  100.0  1e-138
MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGV
LLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDILEARYAIEASTAWHAAMRA
TPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHNIVLLQTMRGFFDVLQSSVKH
SRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHA
RITRLPGEHNEHSREKNA
>gi|223713512|gb|ACDM01000086.1| GENE     3      2078  -      3733   1787    551 aa, chain - ## HITS:1  COG:lldP KEGG:ns NR:ns ## COG: lldP COG1620 # Protein_GI_number: 16131474 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Escherichia coli K12 # 1     551       1     551     551     928  100.0  0
MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKM
PVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLI
VGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVA
GQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYL
SSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVL
RAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAY
AAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAF
ISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGV
SDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITT
LQAYVLTWMIP
>gi|223713512|gb|ACDM01000086.1| GENE     4      3670  -      3888     62     72 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MLSDWKARYSRRDRSFVARDSLQVSWSPRTSCNESVAHLLVTRCVKVALPIVLCRDNDNE
WLTKCYVLATLM
>gi|223713512|gb|ACDM01000086.1| GENE     5      4105  -      4467    438    120 aa, chain - ## HITS:1  COG:no KEGG:ECSP_4596 NR:ns ## KEGG: ECSP_4596 # Name: yibL # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1     120       1     120     120     168   99.0  5e-41
MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL
SKEAQKLMKMPFQRAITKKEQADMGKLKKSVCGLVVVHPMTALGREMGLQEMTGFSKTAF
>gi|223713512|gb|ACDM01000086.1| GENE     6      4752  -      4961    232     69 aa, chain + ## HITS:1  COG:no KEGG:JW3576 NR:ns ## KEGG: JW3576 # Name: yibT # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      69       1      69      69     121  100.0  6e-27
MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRL
YRPKQVEGQ
>gi|223713512|gb|ACDM01000086.1| GENE     7      4973  -      5560    415    195 aa, chain - ## HITS:1  COG:mtlR KEGG:ns NR:ns ## COG: mtlR COG3722 # Protein_GI_number: 16131472 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     195       1     195     195     367  100.0  1e-101
MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL
VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL
NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL
TELISKISLKKAFQK
>gi|223713512|gb|ACDM01000086.1| GENE     8      5560  -      6708   1564    382 aa, chain - ## HITS:1  COG:mtlD KEGG:ns NR:ns ## COG: mtlD COG0246 # Protein_GI_number: 16131471 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1     382       1     382     382     729   99.0  0
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV
SGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIAC
ENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRIVPPSASATNDPLEVTVETFS
EWIVDKTQFKGALSNIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAIL
DEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRK
LSAGDRLIKPLLGTLEYGLPHKNLIEGIAAAMHFRSEDDPQAQELAALIADKGPQAALAQ
ISGLDANSEVVSEAVTAYKAMQ
>gi|223713512|gb|ACDM01000086.1| GENE     9      6938  -      8851   2500    637 aa, chain - ## HITS:1  COG:mtlA_1 KEGG:ns NR:ns ## COG: mtlA_1 COG2213 # Protein_GI_number: 16131470 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Escherichia coli K12 # 1     493       1     493     493     926  100.0  0
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLL
PLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGWCIKHFDRWVDG
KIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKMLAAGVNFMVVHDMLPLASIF
VEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGSAK
QSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILGGGLVSPASPGSI
LAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESK
GASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL
PPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTANEEKVKD
SLKDSFDDSSANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREK
LTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEH
IQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK
>gi|223713512|gb|ACDM01000086.1| GENE    10      9388  -      9750    283    120 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_3931 NR:ns ## KEGG: EcSMS35_3931 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     120      35     154     154     238  100.0  6e-62
MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP
FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI
>gi|223713512|gb|ACDM01000086.1| GENE    11      9753  -     10889   1064    378 aa, chain + ## HITS:1  COG:ECs4473 KEGG:ns NR:ns ## COG: ECs4473 COG1566 # Protein_GI_number: 15833727 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli O157:H7 # 1     378       1     378     378     723  100.0  0
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV
VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVM
RKVLLRMTSWMHYLYLDH
>gi|223713512|gb|ACDM01000086.1| GENE    12     12494  -     12955     93    153 aa, chain - ## HITS:1  COG:no KEGG:JW3570 NR:ns ## KEGG: JW3570 # Name: yibG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     153       1     153     153     277  100.0  7e-74
MKACLLLFFYFSFICQLHGADVKIKQNESMMGSTAMTYDLSEEKLMKLKYKSQHGDSEAS
FRLYQYYCFTKNNIYKQLRFLERSASQGNVTAQFNYGVFLSDTNPTLSEYYNLNRAIYWM
EFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP
>gi|223713512|gb|ACDM01000086.1| GENE    13     12967  -     13716    225    249 aa, chain - ## HITS:1  COG:ECs4470 KEGG:ns NR:ns ## COG: ECs4470 COG3209 # Protein_GI_number: 15833724 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 1     249    1161    1409    1409     520   99.0  1e-148
EGTTEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQ
DPIGLKGGWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTP
TSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFASQLAKELHTNVIG
PDTLWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQG
TPEKPSDIR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:28:01 2011
 Seq name: gi|223713511|gb|ACDM01000087.1| Escherichia sp. 4_1_40B cont1.87, whole genome shotgun sequence 
 Length of sequence - 94925 bp
 Number of predicted genes - 81, with homology - 80
 Number of transcription units - 50, operones - 16 average op.length -  2.9
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       129 -       188    4.2 
     1     1 Op  1   4/0.300   +    CDS        309 -       917    729  ## COG0625 Glutathione S-transferase
     2     1 Op  2   7/0.000   +    CDS       1015 -      2406   1366  ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]
     3     1 Op  3   2/0.900   +    CDS       2403 -      4247   1781  ## COG3276 Selenocysteine-specific translation elongation factor
                               +    Term      4298 -      4357   13.1 
                               +    Prom      4328 -      4387    9.5 
     4     2 Op  1   6/0.000   +    CDS       4437 -      5588   1357  ## COG1454 Alcohol dehydrogenase, class IV
                               +    Term      5604 -      5638    5.1 
                               +    Prom      5609 -      5668    2.3 
     5     2 Op  2     .       +    CDS       5753 -      7291   1814  ## COG1012 NAD-dependent aldehyde dehydrogenases
                               +    Term      7300 -      7354   -0.3 
                               -    Term      7402 -      7453   -0.6 
     6     3 Tu  1     .       -    CDS       7510 -      7722    133  ## ECIAI1_3755 conserved hypothetical protein, putative membrane protein
                               -    Prom      7745 -      7804    5.8 
                               +    Prom      7744 -      7803    8.8 
     7     4 Op  1     .       +    CDS       7836 -      8159    358  ## B21_03393 hypothetical protein
     8     4 Op  2     .       +    CDS       8165 -      9301   1036  ## COG1566 Multidrug resistance efflux pump
                               +    Term      9351 -      9385   -0.7 
     9     5 Tu  1     .       -    CDS       9298 -     10272    704  ## COG0583 Transcriptional regulator
                               -    Prom     10295 -     10354   10.5 
                               +    Prom     10244 -     10303    8.9 
    10     6 Tu  1     .       +    CDS      10396 -     11136    737  ## COG3713 Outer membrane protein V
    11     7 Op  1   8/0.000   -    CDS      11483 -     12178    576  ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
    12     7 Op  2   9/0.000   -    CDS      12172 -     13032    946  ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase
    13     7 Op  3   3/0.750   -    CDS      13025 -     13687    799  ## COG0269 3-hexulose-6-phosphate synthase and related proteins
    14     7 Op  4   3/0.750   -    CDS      13641 -     15179   1244  ## COG1070 Sugar (pentulose and hexulose) kinases
    15     7 Op  5   9/0.000   -    CDS      15183 -     16169    392  ## PROTEIN SUPPORTED gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22
    16     7 Op  6  11/0.000   -    CDS      16182 -     17462    754  ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16
    17     7 Op  7   2/0.900   -    CDS      17462 -     17935    302  ## COG3090 TRAP-type C4-dicarboxylate transport system, small permease component
                               -    Prom     17991 -     18050    1.9 
                               -    Term     18005 -     18043   -0.7 
    18     8 Op  1   3/0.750   -    CDS      18053 -     18520    478  ## COG2731 Beta-galactosidase, beta subunit
    19     8 Op  2     .       -    CDS      18532 -     19530   1096  ## COG2055 Malate/L-lactate dehydrogenases
                               -    Prom     19591 -     19650    4.5 
                               +    Prom     19521 -     19580    6.0 
    20     9 Op  1     .       +    CDS      19731 -     20579    726  ## COG1414 Transcriptional regulator
    21     9 Op  2     .       +    CDS      20681 -     21154    132  ## COG1142 Fe-S-cluster-containing hydrogenase components 2
                               +    Term     21157 -     21202    8.2 
    22    10 Tu  1     .       -    CDS      21305 -     22558   1269  ## COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase
                               -    Prom     22589 -     22648    2.4 
    23    11 Tu  1     .       -    CDS      22736 -     24766   1726  ## COG0366 Glycosidases
                               -    Prom     25007 -     25066    5.6 
    24    12 Tu  1     .       +    CDS      25338 -     25910    465  ## COG2992 Uncharacterized FlgJ-related protein
                               +    Term     25923 -     25968   13.0 
    25    13 Tu  1   4/0.300   -    CDS      26106 -     27284    998  ## COG1609 Transcriptional regulators
                               -    Term     27300 -     27345    8.0 
    26    14 Op  1  11/0.000   -    CDS      27362 -     28543   1091  ## COG4214 ABC-type xylose transport system, permease component
    27    14 Op  2  11/0.000   -    CDS      28521 -     30062    231  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
                               -    Term     30096 -     30136    5.1 
    28    14 Op  3     .       -    CDS      30140 -     31132    919  ## COG4213 ABC-type xylose transport system, periplasmic component
                               -    Prom     31351 -     31410    6.9 
                               +    Prom     31342 -     31401    4.7 
    29    15 Op  1  11/0.000   +    CDS      31498 -     32820   1375  ## COG2115 Xylose isomerase
                               +    Term     32822 -     32859   -0.3 
    30    15 Op  2   3/0.750   +    CDS      32892 -     34346    918  ## COG1070 Sugar (pentulose and hexulose) kinases
                               +    Term     34349 -     34397    1.1 
                               +    Prom     34379 -     34438    5.8 
    31    16 Op  1   1/1.000   +    CDS      34515 -     34856    357  ## COG4682 Predicted membrane protein
    32    16 Op  2     .       +    CDS      34902 -     35339    472  ## COG4682 Predicted membrane protein
                               +    Term     35349 -     35386    5.3 
    33    17 Tu  1     .       -    CDS      35381 -     36376    801  ## COG3274 Uncharacterized protein conserved in bacteria
                               -    Prom     36508 -     36567    3.8 
                               +    Prom     36441 -     36500    4.5 
    34    18 Op  1     .       +    CDS      36554 -     36850    286  ## JW3532 hypothetical protein
                               +    Prom     36854 -     36913    3.4 
    35    18 Op  2  19/0.000   +    CDS      36945 -     37856   1151  ## COG0752 Glycyl-tRNA synthetase, alpha subunit
    36    18 Op  3     .       +    CDS      37866 -     39935   2917  ## COG0751 Glycyl-tRNA synthetase, beta subunit
                               +    Term     39954 -     39984    3.0 
                               -    Term     40137 -     40171    0.2 
    37    19 Tu  1     .       -    CDS      40214 -     40579    185  ## COG2801 Transposase and inactivated derivatives
                               +    Prom     40395 -     40454    4.0 
    38    20 Tu  1     .       +    CDS      40520 -     40807     58  ## gi|10955443|ref|NP_065295.1| hypothetical protein R721_05
                               +    Term     40816 -     40853    0.1 
    39    21 Tu  1     .       -    CDS      41062 -     41583    133  ## COG2963 Transposase and inactivated derivatives
                               +    Prom     41520 -     41579    3.5 
    40    22 Tu  1     .       +    CDS      41663 -     41815     69  ## ECP_3660 small toxic polypeptide
                               +    Term     41824 -     41855    4.1 
                               -    Term     41940 -     41975    4.9 
    41    23 Tu  1   4/0.300   -    CDS      42002 -     42214    303  ## COG1278 Cold shock proteins
                               -    Prom     42375 -     42434    5.2 
                               -    Term     42437 -     42468    4.1 
    42    24 Tu  1     .       -    CDS      42495 -     42785    250  ## COG2944 Predicted transcriptional regulator
                               +    Prom     43002 -     43061    5.0 
    43    25 Tu  1     .       +    CDS      43219 -     43929    788  ## APECO1_2894 hypothetical protein
                               +    Term     43939 -     43969    0.2 
                               -    Term     43919 -     43964    6.3 
    44    26 Tu  1     .       -    CDS      43979 -     44953    861  ## COG1052 Lactate dehydrogenase and related dehydrogenases
                               -    Prom     44976 -     45035    3.3 
                               -    Term     45008 -     45047    7.6 
    45    27 Tu  1     .       -    CDS      45057 -     45716    213  ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1
                               -    Prom     45784 -     45843    2.4 
                               +    Prom     45692 -     45751    5.7 
    46    28 Tu  1     .       +    CDS      45869 -     48202   1880  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
                               -    Term     48073 -     48108    6.1 
    47    29 Op  1   5/0.050   -    CDS      48171 -     48611    418  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
    48    29 Op  2     .       -    CDS      48608 -     49171    357  ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12)
                               -    Prom     49325 -     49384    6.5 
                               +    Prom     49193 -     49252    3.1 
    49    30 Tu  1     .       +    CDS      49329 -     50027    577  ## COG5571 Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion
                               +    Prom     50159 -     50218    3.5 
    50    31 Tu  1     .       +    CDS      50256 -     51464   1616  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term     51549 -     51578    0.4 
                               +    Prom     51555 -     51614    7.4 
    51    32 Tu  1     .       +    CDS      51788 -     53479   1524  ## COG2194 Predicted membrane-associated, metal-dependent hydrolase
                               +    Term     53534 -     53580    6.6 
                               +   TRNA      53571 -     53647   85.1  # Pro CGG 0 0
                               +    Prom     54333 -     54392    3.2 
    52    33 Tu  1     .       +    CDS      54558 -     56165   2018  ## COG0747 ABC-type dipeptide transport system, periplasmic component
                               +    Term     56386 -     56421    1.5 
                               +    Prom     56197 -     56256    3.0 
    53    34 Op  1  49/0.000   +    CDS      56473 -     57492    355  ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21
    54    34 Op  2  44/0.000   +    CDS      57502 -     58404   1285  ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
    55    34 Op  3  44/0.000   +    CDS      58415 -     59398    575  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
    56    34 Op  4     .       +    CDS      59395 -     60399    802  ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9
                               +    Term     60409 -     60439    1.7 
    57    35 Tu  1     .       -    CDS      60429 -     61700   1186  ## COG0814 Amino acid permeases
                               -    Prom     61801 -     61860    1.7 
                               +    Prom     61838 -     61897    2.3 
    58    36 Tu  1     .       +    CDS      62086 -     62283     92  ## G2583_4275 hypothetical protein
                               +    Term     62334 -     62372    7.0 
                               -    Term     62129 -     62188    1.2 
    59    37 Op  1     .       -    CDS      62370 -     64049   1366  ## B21_03339 hypothetical protein
    60    37 Op  2     .       -    CDS      64046 -     64237    212  ## ECO103_4265 hypothetical protein
    61    37 Op  3     .       -    CDS      64234 -     65805    862  ## B21_03337 hypothetical protein
                               -    Prom     65861 -     65920    4.8 
                               +    Prom     65839 -     65898    4.3 
    62    38 Op  1     .       +    CDS      66078 -     66266    253  ## SSON_3856 hypothetical protein
    63    38 Op  2   1/1.000   +    CDS      66278 -     67030    694  ## COG1192 ATPases involved in chromosome partitioning
    64    38 Op  3     .       +    CDS      67027 -     69645   2503  ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis
    65    38 Op  4     .       +    CDS      69656 -     71995   2385  ## ECO26_4622 cellulose synthase regulator protein
    66    38 Op  5   4/0.300   +    CDS      72002 -     73108   1106  ## COG3405 Endoglucanase Y
    67    38 Op  6   5/0.050   +    CDS      73090 -     76563   3271  ## COG0457 FOG: TPR repeat
    68    39 Tu  1     .       +    CDS      76678 -     78633   1955  ## COG2200 FOG: EAL domain
                               +    Term     78658 -     78711    4.3 
                               +    Prom     78668 -     78727    3.6 
    69    40 Tu  1     .       +    CDS      78816 -     80102   1569  ## COG1301 Na+/H+-dicarboxylate symporters
                               +    Term     80115 -     80156    6.1 
                               +    Prom     80286 -     80345    4.0 
    70    41 Tu  1     .       +    CDS      80365 -     81819   1614  ## COG0612 Predicted Zn-dependent peptidases
                               +    Term     81820 -     81867    3.3 
                               -    Term     81808 -     81853    5.0 
    71    42 Tu  1     .       -    CDS      81915 -     82844   1027  ## COG0524 Sugar kinases, ribokinase family
                               -    Prom     83069 -     83128    2.6 
                               +    Prom     82879 -     82938    2.8 
    72    43 Op  1   4/0.300   +    CDS      83076 -     83843    625  ## COG2200 FOG: EAL domain
    73    43 Op  2     .       +    CDS      83913 -     85973   1670  ## COG2982 Uncharacterized protein involved in outer membrane biogenesis
                               +    Term     85977 -     86023    8.9 
                               -    Term     85968 -     86004    8.2 
    74    44 Tu  1     .       -    CDS      86155 -     87477   1718  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     87625 -     87684    5.4 
                               -    Term     87837 -     87885    6.5 
    75    45 Op  1   3/0.750   -    CDS      87888 -     88901   1054  ## COG1295 Predicted membrane protein
    76    45 Op  2     .       -    CDS      88950 -     89831    725  ## COG0583 Transcriptional regulator
                               -    Prom     89905 -     89964    1.8 
                               +    Prom     90252 -     90311    4.3 
    77    46 Tu  1     .       +    CDS      90369 -     90971    455  ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
                               +    Term     90981 -     91030    8.4 
                               -    Term     90969 -     91018    8.4 
    78    47 Tu  1     .       -    CDS      91022 -     92671   1658  ## COG1626 Neutral trehalase
                               -    Prom     92782 -     92841    6.6 
                               +    Prom     92996 -     93055    4.1 
    79    48 Tu  1     .       +    CDS      93075 -     94472   1173  ## COG1858 Cytochrome c peroxidase
                               +    Term     94480 -     94521    8.8 
    80    49 Tu  1     .       -    CDS      94604 -     94750     87  ## 
                               -    Prom     94822 -     94881    5.5 
                               +    Prom     94511 -     94570    6.0 
    81    50 Tu  1     .       +    CDS      94683 -     94923    163  ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins
Predicted protein(s)
>gi|223713511|gb|ACDM01000087.1| GENE     1       309  -       917    729    202 aa, chain + ## HITS:1  COG:yibF KEGG:ns NR:ns ## COG: yibF COG0625 # Protein_GI_number: 16131463 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1     202       1     202     202     401  100.0  1e-112
MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECW
FDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSE
DELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPH
LVKLVENLFSRESFARTEPPKA
>gi|223713511|gb|ACDM01000087.1| GENE     2      1015  -      2406   1366    463 aa, chain + ## HITS:1  COG:ECs4468 KEGG:ns NR:ns ## COG: ECs4468 COG1921 # Protein_GI_number: 15833722 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Escherichia coli O157:H7 # 1     463       1     463     463     843  100.0  0
MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQMLDEAREVIRGSQTLPAW
CENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAEAAVEAVAQAMRSPVTLEY
DLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEI
GGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNENTALLMKVHTSNYSIQGFTKAID
EAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEPMPQELIAAGVSLVSFSGDKLLGGP
QAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALSEKLPTLRLLTRS
AEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLSQIGSGSLPVDRLPSAALTFTPHDGRGSH
LESLAARWRELPVPVIGRIYDGRLWLDLRCLEDEQRFLEMLLK
>gi|223713511|gb|ACDM01000087.1| GENE     3      2403  -      4247   1781    614 aa, chain + ## HITS:1  COG:selB KEGG:ns NR:ns ## COG: selB COG3276 # Protein_GI_number: 16131461 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Selenocysteine-specific translation elongation factor # Organism: Escherichia coli K12 # 1     614       1     614     614    1218  100.0  0
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPG
HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA
RVDEVERQVKEVLREYGFAEAKLFITAATEGRGMDALREHLLQLPEREHASQHSFRLAID
RAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRVRALHAQNQPTETANAGQRIALN
IAGDAEKEQINRGDWLLADVPPEPFTRVIVELQTHTPLTQWQPLHIHHAASHVTGRVSLL
EDNLAELVFDTPLWLADNDRLVLRDISARNTLAGARVVMLNPPRRGKRKPEYLQWLASLA
RAQSDADALSVHLERGAVNLADFAWARQLNGEGMRELLQQPGYIQAGYSLLNAPVAARWQ
RKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLLLIEKMRESGDIHSHHGWLHL
PDHKAGFSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV
KDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG
NDHLLRDALLFPEK
>gi|223713511|gb|ACDM01000087.1| GENE     4      4437  -      5588   1357    383 aa, chain + ## HITS:1  COG:ECs4466 KEGG:ns NR:ns ## COG: ECs4466 COG1454 # Protein_GI_number: 15833720 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1     383       1     383     383     704   99.0  0
MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNI
FSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDY
EGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLM
IGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALKAVTMIAENLPLAVEDGSNAKAR
EAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSKVAAARL
RDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD
ACGFTNPIQATHEEIVAIYRAAM
>gi|223713511|gb|ACDM01000087.1| GENE     5      5753  -      7291   1814    512 aa, chain + ## HITS:1  COG:aldB KEGG:ns NR:ns ## COG: aldB COG1012 # Protein_GI_number: 16131459 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1     512      31     542     542    1074  100.0  0
MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQNLTPVTGQLLCEVASSG
KRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETS
AADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWK
MAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGVVNVVNGAGGVIGEYLATSKRIA
KVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFA
FNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSVTQMGAQVSHGQLETILN
YIDIGKKEGADVLTGGRRKLLEGELKDGYYLEPTILFGQNNMRVFQEEIFGPVLAVTTFK
TMEEALELANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQS
GIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>gi|223713511|gb|ACDM01000087.1| GENE     6      7510  -      7722    133     70 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_3755 NR:ns ## KEGG: ECIAI1_3755 # Name: not_defined # Def: conserved hypothetical protein, putative membrane protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1      70       1      70      70     124  100.0  1e-27
MCCLVFQQDEVYHIEIVELLAKLMNNSSKTSTVQIKRIKPSIIYRLLLIGLGSPMVIYGL
VRPLTIETRD
>gi|223713511|gb|ACDM01000087.1| GENE     7      7836  -      8159    358    107 aa, chain + ## HITS:1  COG:no KEGG:B21_03393 NR:ns ## KEGG: B21_03393 # Name: yiaW # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     107       1     107     107     199  100.0  3e-50
MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP
FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE
>gi|223713511|gb|ACDM01000087.1| GENE     8      8165  -      9301   1036    378 aa, chain + ## HITS:1  COG:yiaV KEGG:ns NR:ns ## COG: yiaV COG1566 # Protein_GI_number: 16131457 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1     378       1     378     378     726  100.0  0
MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKA
VISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRAL
GAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKS
SAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTY
AASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPA
VPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVM
RKVLLRMTSWVHYLYLDH
>gi|223713511|gb|ACDM01000087.1| GENE     9      9298  -     10272    704    324 aa, chain - ## HITS:1  COG:yiaU KEGG:ns NR:ns ## COG: yiaU COG0583 # Protein_GI_number: 16131456 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     324       1     324     324     661  100.0  0
MTKLQLKYRELKIISVIAASENISHAATVLGIAQANVSKYLADFESKVGLKVFDRTTRQL
MLTPFGTALLPYINDMLDRNEQLNNFIADYKHEKRGRVTIYAPTGIITYLSKHVIDKIKD
IGDITLSLKTCNLERNAFYEGVEFPDDCDVLISYAPPKDESLVASFITQYAVTAYASQRY
LEKHPISRPDELEHHSCILIDSMMIDDANIWRFNVAGSKEVRDYRVKGNYVCDNTQSALE
LARNHLGIVFAPDKSVQSDLQDGTLVPCFQQPYEWWLDLVAIFRKREYQPWRVQYVLDEM
LREIRHQLAQSQQLRPEQAAESED
>gi|223713511|gb|ACDM01000087.1| GENE    10     10396  -     11136    737    246 aa, chain + ## HITS:1  COG:yiaT KEGG:ns NR:ns ## COG: yiaT COG3713 # Protein_GI_number: 16131455 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Escherichia coli K12 # 1     246       1     246     246     474  100.0  1e-134
MLINRNIVALFALPFMASATASELSIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVR
QTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWG
TVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESR
RSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVT
GVSWRF
>gi|223713511|gb|ACDM01000087.1| GENE    11     11483  -     12178    576    231 aa, chain - ## HITS:1  COG:sgbE KEGG:ns NR:ns ## COG: sgbE COG0235 # Protein_GI_number: 16131454 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     231       1     231     231     464  100.0  1e-131
MLEQLKADVLAANLALPAHHLVTFTWGNVSAVDETRQWMVIKPSGVEYDVMTADDMVVVE
IASGKVVEGSKKPSSDTPTHLALYRRYAEIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD
YFYGAIPCTRQMTAEEINGEYEYQTGEVIIETFEERGRSPAQIPAVLVHSHGPFAWGKNA
ADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELLDKHYLRKHGANAYYGQ
>gi|223713511|gb|ACDM01000087.1| GENE    12     12172  -     13032    946    286 aa, chain - ## HITS:1  COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 1     286      12     297     297     576   99.0  1e-164
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRTSLVA
AMIETGVGIPSMCLSAHRRFPFGSRDEAVRERAREIMSKAIRLARDLGIRTIQLAGYDVY
YEDHDEGTRQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKWDEMLASPWFTV
YPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTGQSPGQFRDVPFGEGCVDFVGIF
KTLHKLNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
>gi|223713511|gb|ACDM01000087.1| GENE    13     13025  -     13687    799    220 aa, chain - ## HITS:1  COG:sgbH KEGG:ns NR:ns ## COG: sgbH COG0269 # Protein_GI_number: 16131452 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Escherichia coli K12 # 1     220       1     220     220     406  100.0  1e-113
MSRPLLQLALDHSSLEAAQRDVTLLKDSVDIVEAGTILCLNEGLGAVKALREQCPDKIIV
ADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAMAQRCGGEIQIELFGNWTLD
DARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPADLPLF
KDIRVKAFIAGRALAGAANPAQVAGDFHAQIDAIWGGARA
>gi|223713511|gb|ACDM01000087.1| GENE    14     13641  -     15179   1244    512 aa, chain - ## HITS:1  COG:lyxK KEGG:ns NR:ns ## COG: lyxK COG1070 # Protein_GI_number: 16131451 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     474       1     474     498     995  100.0  0
MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIR
ALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPE
KLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISE
SNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGG
LFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEA
SPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQ
AIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLR
IELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKNINVIS
ISLPHFRAFTPALRSTHYEPTTSATGPRPLIT
>gi|223713511|gb|ACDM01000087.1| GENE    15     15183  -     16169    392    328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22 [Algoriphagus sp. PR1] # 4     328       3     325     328 155  28 7e-37
MKLRSVTYALFIAGLAAFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELK
LKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTL
DGKVGDDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAF
KVFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVI
NKAKFDGLSPEFQQALVSSAQEAGNYQRKLVAEDQQKIIDGMKEAGVEVITDLDRKAFSD
ALGNQVRDMFVKDVPQGADLLKAVDEVQ
>gi|223713511|gb|ACDM01000087.1| GENE    16     16182  -     17462    754    426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 1     419       3     423     431 295  36 8e-79
IMAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMAQTLVNGADSFSLLAI
PFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADTAAVA
ALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGM
MMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIWALFLPVIIIGGFRSGLFTPTE
AGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTSVVMFLVASAQVSAWLITIAELPM
MVSDLLQPLVDSPRLLFIVIMVAILIVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGV
MFIINCSIGLITPPIGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVVFVFIPDLIIL
PLKWIN
>gi|223713511|gb|ACDM01000087.1| GENE    17     17462  -     17935    302    157 aa, chain - ## HITS:1  COG:yiaM KEGG:ns NR:ns ## COG: yiaM COG3090 # Protein_GI_number: 16131448 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, small permease component # Organism: Escherichia coli K12 # 1     157       1     157     157     284  100.0  4e-77
MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDN
AHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLKTIQDWSDYSPILGLPIGL
MYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA
>gi|223713511|gb|ACDM01000087.1| GENE    18     18053  -     18520    478    155 aa, chain - ## HITS:1  COG:yiaL KEGG:ns NR:ns ## COG: yiaL COG2731 # Protein_GI_number: 16131447 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1     155       1     155     155     315  100.0  2e-86
MIFGHIAQPNPCRLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYTQIIDLTTREAVVN
RPEVHRRYIDIQFLAWGEEKIGIAIDTGNNKVSESLLEQRNIIFYHDSEHESFIEMIPGS
YAIFFPQDVHRPGCIMQTASEIRKIVVKVALTALN
>gi|223713511|gb|ACDM01000087.1| GENE    19     18532  -     19530   1096    332 aa, chain - ## HITS:1  COG:yiaK KEGG:ns NR:ns ## COG: yiaK COG2055 # Protein_GI_number: 16131446 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1     332       1     332     332     674  100.0  0
MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGD
IIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRG
GSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSY
GMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLL
SDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAI
RLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
>gi|223713511|gb|ACDM01000087.1| GENE    20     19731  -     20579    726    282 aa, chain + ## HITS:1  COG:yiaJ KEGG:ns NR:ns ## COG: yiaJ COG1414 # Protein_GI_number: 16131445 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     282       1     282     282     566  100.0  1e-161
MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVH
RLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETIN
FSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQ
HEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSI
SLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
>gi|223713511|gb|ACDM01000087.1| GENE    21     20681  -     21154    132    157 aa, chain + ## HITS:1  COG:yiaI KEGG:ns NR:ns ## COG: yiaI COG1142 # Protein_GI_number: 16131444 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1     157       1     157     157     258  100.0  4e-69
MNRFIIADATKCIGCRTCEVACAVSHHENQDCAALSPDEFISRIRVIKDHCWTTAVACHQ
CEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAMEVVSSRKKARAIKCDL
CWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV
>gi|223713511|gb|ACDM01000087.1| GENE    22     21305  -     22558   1269    417 aa, chain - ## HITS:1  COG:avtA KEGG:ns NR:ns ## COG: avtA COG3977 # Protein_GI_number: 16131443 # Func_class: E Amino acid transport and metabolism # Function: Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase # Organism: Escherichia coli K12 # 1     417       1     417     417     872   99.0  0
MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIPEMQDYFQTLLTDMLES
GKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNGSQSAFFYLFNLFAGR
RADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLHIGEET
GMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLWNPN
IVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGIISLAPGGIGPAMMCEMIKRNDLLR
LSETVIKPFYYQRVQETIAIIRRYLPENRCLIHKPEGAIFLWLWFKDLPITTEQLYQRLK
ARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYVPEPEKIEAGVKILAEEIERAWAESH
>gi|223713511|gb|ACDM01000087.1| GENE    23     22736  -     24766   1726    676 aa, chain - ## HITS:1  COG:malS KEGG:ns NR:ns ## COG: malS COG0366 # Protein_GI_number: 16131442 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1     676       1     676     676    1367  100.0  0
MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQP
ADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRE
CPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDT
SAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQ
LGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSA
HQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHS
FNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVF
YKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAA
LREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQ
MDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFG
PTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFV
REHGDDKVLVVWAGQQ
>gi|223713511|gb|ACDM01000087.1| GENE    24     25338  -     25910    465    190 aa, chain + ## HITS:1  COG:ECs4453 KEGG:ns NR:ns ## COG: ECs4453 COG2992 # Protein_GI_number: 15833707 # Func_class: R General function prediction only # Function: Uncharacterized FlgJ-related protein # Organism: Escherichia coli O157:H7 # 1     190      85     274     274     348  100.0  4e-96
MPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLE
RVDIIPTSMVATMAAAESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKE
SVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQ
DNQRLIAAHM
>gi|223713511|gb|ACDM01000087.1| GENE    25     26106  -     27284    998    392 aa, chain - ## HITS:1  COG:xylR_1 KEGG:ns NR:ns ## COG: xylR_1 COG1609 # Protein_GI_number: 16131440 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1     265       1     265     265     542  100.0  1e-154
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGV
IADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN
RFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQT
LPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR
QMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACK
GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMC
GYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
>gi|223713511|gb|ACDM01000087.1| GENE    26     27362  -     28543   1091    393 aa, chain - ## HITS:1  COG:ECs4451 KEGG:ns NR:ns ## COG: ECs4451 COG4214 # Protein_GI_number: 15833705 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, permease component # Organism: Escherichia coli O157:H7 # 1     393       1     393     393     596  100.0  1e-170
MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNL
LRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLG
LLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPAS
TGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRG
VPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMV
AIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNG
MSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS
>gi|223713511|gb|ACDM01000087.1| GENE    27     28521  -     30062    231    513 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 254     483       7     240     329 93  29 3e-18
MPYLLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYE
GEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMT
LRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSV
LLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVG
RELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGR
TETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKN
ITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCL
LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHE
GKLKANLINHNLTQEQVMEAALRSEHHVEKQSV
>gi|223713511|gb|ACDM01000087.1| GENE    28     30140  -     31132    919    330 aa, chain - ## HITS:1  COG:xylF KEGG:ns NR:ns ## COG: xylF COG4213 # Protein_GI_number: 16131437 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, periplasmic component # Organism: Escherichia coli K12 # 1     330       1     330     330     579  100.0  1e-165
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV
QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDAD
IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGK
IKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDV
PSRLLTPIDVNKNNIKDTVIKDGFHKESEL
>gi|223713511|gb|ACDM01000087.1| GENE    29     31498  -     32820   1375    440 aa, chain + ## HITS:1  COG:xylA KEGG:ns NR:ns ## COG: xylA COG2115 # Protein_GI_number: 16131436 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Escherichia coli K12 # 1     440       1     440     440     905  100.0  0
MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRFAACYWHTFCWNGADMF
GVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVPFYCFHDVDVSPEGASLKEYINNFA
QMVDVLAGKQEESGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMEATHKL
GGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRG
DAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
DTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPV
HQSGRQEQLENLVNHYLFDK
>gi|223713511|gb|ACDM01000087.1| GENE    30     32892  -     34346    918    484 aa, chain + ## HITS:1  COG:xylB KEGG:ns NR:ns ## COG: xylB COG1070 # Protein_GI_number: 16131435 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     484       1     484     484     923  100.0  0
MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALG
DQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITG
NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVA
KRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAAGAVG
VGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDW
AAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNE
LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGG
DVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAYQPRRETFRRLYQQLL
PLMA
>gi|223713511|gb|ACDM01000087.1| GENE    31     34515  -     34856    357    113 aa, chain + ## HITS:1  COG:yiaB KEGG:ns NR:ns ## COG: yiaB COG4682 # Protein_GI_number: 16131434 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     113       5     117     117     193  100.0  6e-50
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD
DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA
>gi|223713511|gb|ACDM01000087.1| GENE    32     34902  -     35339    472    145 aa, chain + ## HITS:1  COG:ECs4445 KEGG:ns NR:ns ## COG: ECs4445 COG4682 # Protein_GI_number: 15833699 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     145       2     146     146     268  100.0  2e-72
MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK
TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA
VQKNIRDAGINPPKETQVTQEEYSE
>gi|223713511|gb|ACDM01000087.1| GENE    33     35381  -     36376    801    331 aa, chain - ## HITS:1  COG:yiaH KEGG:ns NR:ns ## COG: yiaH COG3274 # Protein_GI_number: 16131432 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     331       1     331     331     606  100.0  1e-173
MQPKIYWIDNLRGIACLMVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMI
SGYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLWF
FFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYINGDT
FYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADTWYLYC
GPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGIELKNWPI
LDIIWIFCATLAASLLLSMLVQRIDRNRLVS
>gi|223713511|gb|ACDM01000087.1| GENE    34     36554  -     36850    286     98 aa, chain + ## HITS:1  COG:no KEGG:JW3532 NR:ns ## KEGG: JW3532 # Name: ysaB # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      98       2      99      99     194  100.0  6e-49
MMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDV
TAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR
>gi|223713511|gb|ACDM01000087.1| GENE    35     36945  -     37856   1151    303 aa, chain + ## HITS:1  COG:ECs4443 KEGG:ns NR:ns ## COG: ECs4443 COG0752 # Protein_GI_number: 15833697 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1     303       1     303     303     634  100.0  0
MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMAAAYVQ
PSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGMDPTIHDIRFVEDN
WENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSV
YDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALENPL
PLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCN
KDK
>gi|223713511|gb|ACDM01000087.1| GENE    36     37866  -     39935   2917    689 aa, chain + ## HITS:1  COG:glyS KEGG:ns NR:ns ## COG: glyS COG0751 # Protein_GI_number: 16131430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Escherichia coli K12 # 1     689       1     689     689    1326  100.0  0
MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVAN
LAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRA
HVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHTVTLLLGDKVIPATILGI
QSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIADYEERKAKIKADAEEAARKIGGN
ADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPN
FIFVANIESKDPQQIISGNEKVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGT
LRDKTDRIQALAGWIAEQIGADVNHATRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHD
GEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFAL
RRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEG
YTVDTIQAVLARRPTRPADFDARMKAVSHFRTLDAAAALAAANKRVSNILAKSDEVLSDR
VNASTLKEPEEIKLAMQVVVLRDKLEPYFTEGRYQDALVELAELREPVDAFFDKVMVMVD
DKELRINRLTMLEKLRELFLRVADISLLQ
>gi|223713511|gb|ACDM01000087.1| GENE    37     40214  -     40579    185    121 aa, chain - ## HITS:1  COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     121     163     283     283     246  100.0  9e-66
MNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAV
VECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPR
V
>gi|223713511|gb|ACDM01000087.1| GENE    38     40520  -     40807     58     95 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|10955443|ref|NP_065295.1| ## NR: gi|10955443|ref|NP_065295.1| hypothetical protein R721_05 [Escherichia coli] # 1      95      24     118     118     188  100.0  1e-46
MLVRIKLFECLIEHILNHVHHWSFRKAVRNNFVVEEIYYWRQIQLAPIDCKFSNIGNPLL
VWPRSLEISLENIRGGLPYLSSVRAVSLDLNRCFK
>gi|223713511|gb|ACDM01000087.1| GENE    39     41062  -     41583    133    173 aa, chain - ## HITS:1  COG:yi5A KEGG:ns NR:ns ## COG: yi5A COG2963 # Protein_GI_number: 16131428 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     173       1     173     173     320   99.0  7e-88
MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKG
VSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTK
RNIAISVDPEKAVSALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
>gi|223713511|gb|ACDM01000087.1| GENE    40     41663  -     41815     69     50 aa, chain + ## HITS:1  COG:no KEGG:ECP_3660 NR:ns ## KEGG: ECP_3660 # Name: not_defined # Def: small toxic polypeptide # Organism: E.coli_536 # Pathway: not_defined # 1      50      21      70      70      90  100.0  1e-17
MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLACKLKE
>gi|223713511|gb|ACDM01000087.1| GENE    41     42002  -     42214    303     70 aa, chain - ## HITS:1  COG:ECs4441 KEGG:ns NR:ns ## COG: ECs4441 COG1278 # Protein_GI_number: 15833695 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1      70       1      70      70     122  100.0  1e-28
MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK
GPAAGNVTSL
>gi|223713511|gb|ACDM01000087.1| GENE    42     42495  -     42785    250     96 aa, chain - ## HITS:1  COG:ECs4440 KEGG:ns NR:ns ## COG: ECs4440 COG2944 # Protein_GI_number: 15833694 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1      96       1      96      96     164  100.0  5e-41
MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKIDDFARVLGVSV
AMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
>gi|223713511|gb|ACDM01000087.1| GENE    43     43219  -     43929    788    236 aa, chain + ## HITS:1  COG:no KEGG:APECO1_2894 NR:ns ## KEGG: APECO1_2894 # Name: yiaF # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     236      41     276     276     432  100.0  1e-120
MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQK
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV
LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVM
VGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
>gi|223713511|gb|ACDM01000087.1| GENE    44     43979  -     44953    861    324 aa, chain - ## HITS:1  COG:yiaE KEGG:ns NR:ns ## COG: yiaE COG1052 # Protein_GI_number: 16131424 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1     324       5     328     328     644   99.0  0
MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFAEAEGLLGSNENVNAAL
LEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADMLMALVLSTARRVVE
VAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH
KEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV
VDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAAC
AVDNLIDALQGKVEKNCVNPHVAD
>gi|223713511|gb|ACDM01000087.1| GENE    45     45057  -     45716    213    219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 113     214     243     344     347 86  37 4e-16
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRG
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS
ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQG
VDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
>gi|223713511|gb|ACDM01000087.1| GENE    46     45869  -     48202   1880    777 aa, chain + ## HITS:1  COG:bisC KEGG:ns NR:ns ## COG: bisC COG0243 # Protein_GI_number: 16131422 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 39     777       1     739     739    1538  100.0  0
MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQSAVRDQVHSNTRVRFP
MVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWRSN
GVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSD
VVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVA
PHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAKTAEWAAEIC
GVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLS
YHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQHNGMNRHFPD
IRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDL
TMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFTEGKSELQWLETFY
NVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPLAHPLKTASGKI
EIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELY
AVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICIHEGAWPDL
DLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS
>gi|223713511|gb|ACDM01000087.1| GENE    47     48171  -     48611    418    146 aa, chain - ## HITS:1  COG:yiaC KEGG:ns NR:ns ## COG: yiaC COG0454 # Protein_GI_number: 16131421 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1     146       1     146     146     285  100.0  2e-77
MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAYLANAQNWVWEEDGKLL
GFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLMLEVYQKNQPAINFYQAQGF
HIVDCAWQDETQLPTWIMSWPVVQTL
>gi|223713511|gb|ACDM01000087.1| GENE    48     48608  -     49171    357    187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1     181       1     181     185 142  38 8e-33
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF
HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSFV
NHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCC
CYPGNKP
>gi|223713511|gb|ACDM01000087.1| GENE    49     49329  -     50027    577    232 aa, chain + ## HITS:1  COG:yhjY KEGG:ns NR:ns ## COG: yhjY COG5571 # Protein_GI_number: 16131419 # Func_class: N Cell motility # Function: Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion # Organism: Escherichia coli K12 # 1     232       3     234     234     426  100.0  1e-119
MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGLSTERYTWDSDHQPDYND
ILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSM
YNEFGDSTTTLTDPLWHASVSTLGWRVDSRLGDLRPWAQISYNQQFGENIWKAQSGLSRM
TATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTNNSDYLYTMGVSARF
>gi|223713511|gb|ACDM01000087.1| GENE    50     50256  -     51464   1616    402 aa, chain + ## HITS:1  COG:yhjX KEGG:ns NR:ns ## COG: yhjX COG0477 # Protein_GI_number: 16131418 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     402       1     402     402     687  100.0  0
MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAPVSQVAFSFGLLSLGLA
ISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMMLWLSAGVLVGLADGAGYLL
TLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALLMIV
FGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI
AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFA
PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIA
SLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGSL
>gi|223713511|gb|ACDM01000087.1| GENE    51     51788  -     53479   1524    563 aa, chain + ## HITS:1  COG:yhjW KEGG:ns NR:ns ## COG: yhjW COG2194 # Protein_GI_number: 16131417 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     563      12     574     574    1156  100.0  0
MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWKGISAVVELAATVLVTF
FLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVG
LNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRSLAVVVLAGIMVWAPIRLLDI
QQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAWARVDESSDNNSLLNPAKKFTYQ
APQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKLAQEKNLAAFRGYSCDTATKLSLRC
MFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGA
EPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLIILHTKGSHFNYTQRYPRSFAQWKPECIG
VDSGCTKAQMINSYDNSVTYVDHFISSVIDQVRDKKAIVFYAADHGESINEREHLHGTPR
ELAPPEQFRVPMMVWMSDKYLENPANAQAFAQLKKEADMKVPRRHVELYDTIMGCLGYTS
PDGGINENNNWCHIPQAKEAAAN
>gi|223713511|gb|ACDM01000087.1| GENE    52     54558  -     56165   2018    535 aa, chain + ## HITS:1  COG:dppA KEGG:ns NR:ns ## COG: dppA COG0747 # Protein_GI_number: 16131416 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     535       1     535     535    1091  100.0  0
MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPL
YNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVF
SFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAM
DFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQID
TLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQ
KKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAK
ALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKR
AKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDH
NKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE
>gi|223713511|gb|ACDM01000087.1| GENE    53     56473  -     57492    355    339 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 66     333      43     310     320 141  29 1e-32
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK
PMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVL
AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP
LTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR
RDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>gi|223713511|gb|ACDM01000087.1| GENE    54     57502  -     58404   1285    300 aa, chain + ## HITS:1  COG:ECs4422 KEGG:ns NR:ns ## COG: ECs4422 COG1173 # Protein_GI_number: 15833676 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     300       1     300     300     486  100.0  1e-137
MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQ
FRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILG
LIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLT
RAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL
GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>gi|223713511|gb|ACDM01000087.1| GENE    55     58415  -     59398    575    327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3     315      11     324     329 226  40 4e-58
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP
GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ
GGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP
TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAE
EPALNMLADGRQSKCHYPLDDAGRPTL
>gi|223713511|gb|ACDM01000087.1| GENE    56     59395  -     60399    802    334 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3     328       2     329     329 313  47 2e-84
MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCG
KSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQ
ILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDP
DVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC
VEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCR
RRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
>gi|223713511|gb|ACDM01000087.1| GENE    57     60429  -     61700   1186    423 aa, chain - ## HITS:1  COG:yhjV KEGG:ns NR:ns ## COG: yhjV COG0814 # Protein_GI_number: 16131411 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1     423       1     423     423     702  100.0  0
MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPA
TWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDS
ASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFA
MIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRL
ALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITST
VLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWV
SFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLK
LIE
>gi|223713511|gb|ACDM01000087.1| GENE    58     62086  -     62283     92     65 aa, chain + ## HITS:1  COG:no KEGG:G2583_4275 NR:ns ## KEGG: G2583_4275 # Name: ldrD # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      65      16      80      80     125   96.0  6e-28
MHLTTPRGLILTLDHSRIAAKRCHYNTGGYMTFAELGMAFWHDLAAPVIAGILASMIVNW
LNKRK
>gi|223713511|gb|ACDM01000087.1| GENE    59     62370  -     64049   1366    559 aa, chain - ## HITS:1  COG:no KEGG:B21_03339 NR:ns ## KEGG: B21_03339 # Name: bcsG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     559       1     559     559    1088  100.0  0
MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFAAFLLMPLPR
YSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFSTDYLIDLVTRFINWQMIG
AIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLWPAGQPTTTVTTTGGNAAA
TVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEAKRKSTFPSSLPADAQPFELLVI
NICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYSGPAAIRLLRASCGQTSHTNLYQ
PANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSELMDQTNLPVILLGFD
GSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDE
LDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQVSGLRDIPSPSITDVPVGVKFFGMKAP
HQGAPIVIEQPSSFLAISDLVVRVLDGKIFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQ
YQDKPYVRLNGGDWVPYPQ
>gi|223713511|gb|ACDM01000087.1| GENE    60     64046  -     64237    212     63 aa, chain - ## HITS:1  COG:no KEGG:ECO103_4265 NR:ns ## KEGG: ECO103_4265 # Name: bcsF # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      63       1      63      63     104  100.0  9e-22
MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARA
TKK
>gi|223713511|gb|ACDM01000087.1| GENE    61     64234  -     65805    862    523 aa, chain - ## HITS:1  COG:no KEGG:B21_03337 NR:ns ## KEGG: B21_03337 # Name: bcsE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     523       1     523     523    1065  100.0  0
MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVIS
MDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQ
NIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQ
HLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPP
LSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRE
NTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQP
LKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIM
TIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPE
QWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS
>gi|223713511|gb|ACDM01000087.1| GENE    62     66078  -     66266    253     62 aa, chain + ## HITS:1  COG:no KEGG:SSON_3856 NR:ns ## KEGG: SSON_3856 # Name: yhjR # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      62       1      62      62     108  100.0  7e-23
MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ
QK
>gi|223713511|gb|ACDM01000087.1| GENE    63     66278  -     67030    694    250 aa, chain + ## HITS:1  COG:yhjQ KEGG:ns NR:ns ## COG: yhjQ COG1192 # Protein_GI_number: 16131406 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Escherichia coli K12 # 9     250       1     242     242     477   99.0  1e-134
MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLLRLSFNVDFTHRQGWAR
AMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRLSDICSGLQQLKASGRYQW
ILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQALPDGAHILINDFRIGSQVQ
DDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEYRSDALAAEEILTLANWCLLNYS
GLKTPVGSAS
>gi|223713511|gb|ACDM01000087.1| GENE    64     67027  -     69645   2503    872 aa, chain + ## HITS:1  COG:yhjO KEGG:ns NR:ns ## COG: yhjO COG1215 # Protein_GI_number: 16131405 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1     872      17     888     888    1811  100.0  0
MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA
EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM
NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL
MLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAE
TYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIFVPTYNEDLNVVKNTIYASLGID
WPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTHEHAKAGNINNALKYAKGEFVSIFD
CDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQ
DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAA
GLATESLSAHIGQRIRWARGMVQIFRLDNPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIF
LTAPLAFLLLHAYIIYAPALMIALFVLPHMIHASLTNSKIQGKYRHSFWSEIYETVLAWY
IAPPTLVALINPHKGKFNVTAKGGLVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYG
PPTEMLTVVVSMVWVFYNLIVLGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCT
VQDFSDGGLGIKINGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQ
QHIDFVQCTFARADTWALWQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRV
LTSLVSWVVSFIPRRPERSETAQPSDQALAQQ
>gi|223713511|gb|ACDM01000087.1| GENE    65     69656  -     71995   2385    779 aa, chain + ## HITS:1  COG:no KEGG:ECO26_4622 NR:ns ## KEGG: ECO26_4622 # Name: bcsB # Def: cellulose synthase regulator protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     779       1     779     779    1516  100.0  0
MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGAD
APVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYTPS
PSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQD
VCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD
VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPV
IEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDA
PNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTM
PPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN
QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGF
PFSRMADLSQTITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDAD
IMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGA
MAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR
VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE
>gi|223713511|gb|ACDM01000087.1| GENE    66     72002  -     73108   1106    368 aa, chain + ## HITS:1  COG:yhjM KEGG:ns NR:ns ## COG: yhjM COG3405 # Protein_GI_number: 16131403 # Func_class: G Carbohydrate transport and metabolism # Function: Endoglucanase Y # Organism: Escherichia coli K12 # 1     368       1     368     368     724  100.0  0
MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVIDPSDARKITTSEGQSYG
MFSALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVW
MAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVGFAEDNSWRFNP
SYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFSPDWVRYEKDKGWQLKAEKTLIS
SYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTEKNGYPPEKVDVATGKAQGKGPVGF
SAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNYVLTLFGQGWDQHRFRFSTKGELLPDW
GQECANSH
>gi|223713511|gb|ACDM01000087.1| GENE    67     73090  -     76563   3271   1157 aa, chain + ## HITS:1  COG:yhjL KEGG:ns NR:ns ## COG: yhjL COG0457 # Protein_GI_number: 16131402 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 11    1157      20    1166    1166    2122  100.0  0
MRKFTLNIFTLSLGLAVMPMVEAAPTAQQQLLEQVRLGEATHREDLVQQSLYRLELIDPN
NPDVVAARFRSLLRQGDIDGAQKQLDRLSQLAPSSNAYKSSRTTMLLSTPDGRQALQQAR
LQATTGHAEEAVASYNKLFNGAPPEGDIAVEYWSTVAKIPARRGEAINQLKRINADAPGN
TGLQNNLALLLFSSDRRDEGFAVLEQMAKSNAGREGASKIWYGQIKDMPVSDASVSALKK
YLSIFSDGDSVAAAQSQLAEQQKQLADPAFRARAQGLAAVDSGMAGKAIPELQQAVRANP
KDSEALGALGQAYSQKGDRANAVANLEKALALDPHSSNNDKWNSLLKVNRYWLAIQQGDA
ALKANNPDRAERLFQQARNVDNTDSYAVLGLGDVAMARKDYPAAERYYQQTLRMDSGNTN
AVRGLANIYRQQSPEKAEAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA
AALQRQRLALDPGSVWITYRLSQDLWQAGQRSQADTLMRNLAQQKSNDPEQVYAYGLYLS
GHDQDRAALAHINSLPRAQWNSNIQELVNRLQSDQVLETANRLRESGKEAEAEAMLRQQP
PSTRIDLTLADWAQQRRDYTAARAAYQNVLTREPANADAILGLTEVDIAAGDKAAARSQL
AKLPATDNASLNTQRRVALAQAQLGDTAAAQRTFNKLIPQAKSQPPSMESAMVLRDGAKF
EAQAGDPTQALETYKDAMVASGVTTTRPQDNDTFTRLTRNDEKDDWLKRGVRSDAADLYR
QQDLNVTLEHDYWGSSGTGGYSDLKAHTTMLQVDAPYSDGRMFFRSDFVNMNVGSFSTNA
DGKWDDNWGTCTLQDCSGNRSQSDSGASVAVGWRNDVWSWDIGTTPMGFNVVDVVGGISY
SDDIGPLGYTVNAHRRPISSSLLAFGGQKDSPSNTGKKWGGVRADGVGLSLSYDKGEANG
VWASLSGDQLTGKNVEDNWRVRWMTGYYYKVINQNNRRVTIGLNNMIWHYDKDLSGYSLG
QGGYYSPQEYLSFAIPVMWRERTENWSWELGASGSWSHSRTKTMPRYPLMNLIPTDWQEE
AARQSNDGGSSQGFGYTARALLERRVTSNWFVGTAIDIQQAKDYAPSHFLLYVRYSAAGW
QGDMDLPPQPLIPYADW
>gi|223713511|gb|ACDM01000087.1| GENE    68     76678  -     78633   1955    651 aa, chain + ## HITS:1  COG:ECs4409_3 KEGG:ns NR:ns ## COG: ECs4409_3 COG2200 # Protein_GI_number: 15833663 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 # 389     651       1     263     263     507   99.0  1e-143
MAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSAILKGDIPEAEA
ILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPVMVTRLFELPVQISLGVYSLERPA
NPQPIAYLVLQADSFRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINRLILHPLRNIAR
ELNAIPAKELVGHQLALPRLHQDDEIGMLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLP
NKALLMEMLEQVVARKQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRM
ILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDL
TAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQP
QVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQ
ERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAIL
RPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPGDSSMIAAIIMLA
QSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK
>gi|223713511|gb|ACDM01000087.1| GENE    69     78816  -     80102   1569    428 aa, chain + ## HITS:1  COG:dctA KEGG:ns NR:ns ## COG: dctA COG1301 # Protein_GI_number: 16131400 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli K12 # 1     428       1     428     428     733  100.0  0
MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKLIKMIIAPVIFCTVVTG
IAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAKAVAVY
ADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLFGFALHRLGSKGQLIFNVIES
FSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQLGQLIICFYITCILFVVLVLGS
IAKATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSF
NLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLIVLLLSSKGAAGVTGSGFIVLAATLSA
VGHLPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWVKELDHKKLDDVLNNRAPD
GKTHELSS
>gi|223713511|gb|ACDM01000087.1| GENE    70     80365  -     81819   1614    484 aa, chain + ## HITS:1  COG:yhjJ KEGG:ns NR:ns ## COG: yhjJ COG0612 # Protein_GI_number: 16131399 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Escherichia coli K12 # 1     484      15     498     498     899  100.0  0
MMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQ
SGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDL
LKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPAD
PLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPT
LSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALS
ASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNAL
VAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLN
QDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDI
PPAQ
>gi|223713511|gb|ACDM01000087.1| GENE    71     81915  -     82844   1027    309 aa, chain - ## HITS:1  COG:kdgK KEGG:ns NR:ns ## COG: kdgK COG0524 # Protein_GI_number: 16131398 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1     309      74     382     382     626  100.0  1e-179
MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS
QQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLESEQSAA
ICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANGGKVIFDNNYRPRLWASKEET
QQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAG
EGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAEDAAKRGHLTASTVIQYRGA
IIPREAMPA
>gi|223713511|gb|ACDM01000087.1| GENE    72     83076  -     83843    625    255 aa, chain + ## HITS:1  COG:yhjH KEGG:ns NR:ns ## COG: yhjH COG2200 # Protein_GI_number: 16131397 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 1     255       2     256     256     508  100.0  1e-144
MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRLMAVELLTVVTHPLNPS
QRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLASVNIDGPTLIALRQQPKI
LRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLDDFGTGMANFSALSEVRYDYIKI
ARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVETPEEWRDVQNSPAFAAQGWFLS
RPAPIETLNTAVLAL
>gi|223713511|gb|ACDM01000087.1| GENE    73     83913  -     85973   1670    686 aa, chain + ## HITS:1  COG:yhjG KEGG:ns NR:ns ## COG: yhjG COG2982 # Protein_GI_number: 16131396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Escherichia coli K12 # 1     686       6     691     691    1327  100.0  0
MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVW
ERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPW
IKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVS
KADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGKIGGML
ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLP
DTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQ
LRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFK
GRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ
ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNL
MEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASF
ASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPA
AALLALISPSEGEANQCRTILSQMKK
>gi|223713511|gb|ACDM01000087.1| GENE    74     86155  -     87477   1718    440 aa, chain - ## HITS:1  COG:yhjE KEGG:ns NR:ns ## COG: yhjE COG0477 # Protein_GI_number: 16131395 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     440       1     440     440     683  100.0  0
MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPT
AATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATI
GIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGT
FLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLG
TLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIG
FGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMG
LTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAA
MAGLTLIALLLTHETRHQSL
>gi|223713511|gb|ACDM01000087.1| GENE    75     87888  -     88901   1054    337 aa, chain - ## HITS:1  COG:yhjD KEGG:ns NR:ns ## COG: yhjD COG1295 # Protein_GI_number: 16131394 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1     337       1     337     337     661  100.0  0
MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATER
FNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLA
ATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWV
KYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFA
NYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVL
GLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP
>gi|223713511|gb|ACDM01000087.1| GENE    76     88950  -     89831    725    293 aa, chain - ## HITS:1  COG:yhjC KEGG:ns NR:ns ## COG: yhjC COG0583 # Protein_GI_number: 16131393 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     293      31     323     323     589  100.0  1e-168
MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY
QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS
SHDRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTS
HAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRIAV
REALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEYLD
>gi|223713511|gb|ACDM01000087.1| GENE    77     90369  -     90971    455    200 aa, chain + ## HITS:1  COG:yhjB KEGG:ns NR:ns ## COG: yhjB COG2197 # Protein_GI_number: 16131392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli K12 # 1     200       1     200     200     392   99.0  1e-109
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDLDGEF
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
YRRLEVKNRTQAAMMLNISS
>gi|223713511|gb|ACDM01000087.1| GENE    78     91022  -     92671   1658    549 aa, chain - ## HITS:1  COG:ECs4399 KEGG:ns NR:ns ## COG: ECs4399 COG1626 # Protein_GI_number: 15833653 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli O157:H7 # 1     549       1     549     549    1113  100.0  0
MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL
ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS
SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV
ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES
AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV
PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY
GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR
RLIGLYGEP
>gi|223713511|gb|ACDM01000087.1| GENE    79     93075  -     94472   1173    465 aa, chain + ## HITS:1  COG:yhjA KEGG:ns NR:ns ## COG: yhjA COG1858 # Protein_GI_number: 16131390 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Escherichia coli K12 # 1     465       1     465     465     970  100.0  0
MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD
YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM
QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL
PTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVF
NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQG
FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL
GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP
TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
>gi|223713511|gb|ACDM01000087.1| GENE    80     94604  -     94750     87     48 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MAFAPKRESSSSERKSVNSFWSISNSLNLFEGNKKVGFIRNGSKALQA
>gi|223713511|gb|ACDM01000087.1| GENE    81     94683  -     94923    163     80 aa, chain + ## HITS:1  COG:ECs4397 KEGG:ns NR:ns ## COG: ECs4397 COG0076 # Protein_GI_number: 15833651 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1      80       1      80     466     171  100.0  3e-43
MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNL
ATFCQTWDDENVHKLMDLSI
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:29:02 2011
 Seq name: gi|223713510|gb|ACDM01000088.1| Escherichia sp. 4_1_40B cont1.88, whole genome shotgun sequence 
 Length of sequence - 39530 bp
 Number of predicted genes - 33, with homology - 32
 Number of transcription units - 25, operones - 6 average op.length -  2.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        456 -      1220     93  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term      1405 -      1442   -0.9 
                               +    Prom      1365 -      1424    7.7 
     2     2 Tu  1     .       +    CDS       1588 -      2316    191  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term      2388 -      2415   -0.1 
     3     3 Tu  1     .       +    CDS       2461 -      2742    134  ## gi|293412945|ref|ZP_06655613.1| predicted protein
                               -    Term      2622 -      2667   10.6 
     4     4 Op  1  27/0.000   -    CDS       2679 -      5792   3112  ## COG0841 Cation/multidrug efflux pump
     5     4 Op  2   2/0.750   -    CDS       5817 -      6974   1044  ## COG0845 Membrane-fusion protein
                               -    Prom      7124 -      7183    2.6 
     6     5 Tu  1     .       -    CDS       7313 -      7840    405  ## COG2771 DNA-binding HTH domain-containing proteins
                               -    Prom      7932 -      7991    4.4 
                               -    Term      8576 -      8621   12.6 
     7     6 Tu  1     .       -    CDS       8639 -      9211    554  ## COG3247 Uncharacterized conserved protein
                               -    Prom      9342 -      9401    5.2 
                               +    Prom      9319 -      9378    5.9 
     8     7 Op  1     .       +    CDS       9466 -      9798    511  ## EC55989_3953 acid-resistance protein
                               +    Term      9845 -      9887    0.4 
                               +    Prom      9811 -      9870    2.4 
     9     7 Op  2     .       +    CDS       9902 -     10240    323  ## SSON_3577 acid-resistance protein
                               +    Term     10258 -     10300    7.2 
    10     8 Tu  1     .       +    CDS      10304 -     10951    603  ## COG1285 Uncharacterized membrane protein
                               -    Term     10832 -     10877    0.5 
    11     9 Tu  1     .       -    CDS      10993 -     11523    370  ## COG2771 DNA-binding HTH domain-containing proteins
                               -    Prom     11588 -     11647    5.8 
    12    10 Tu  1     .       -    CDS      11679 -     12245    641  ## COG3065 Starvation-inducible outer membrane lipoprotein
                               -    Prom     12426 -     12485    6.9 
                               -    Term     12255 -     12303    0.2 
    13    11 Tu  1     .       -    CDS      12493 -     13230    193  ## ECB_03353 hypothetical protein
                               -    Prom     13267 -     13326    3.5 
                               -    Term     14066 -     14099    0.0 
    14    12 Op  1   2/0.750   -    CDS      14345 -     14770    578  ## COG1393 Arsenate reductase and related proteins, glutaredoxin family
    15    12 Op  2   7/0.000   -    CDS      14783 -     16072   1550  ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases
    16    12 Op  3     .       -    CDS      16126 -     16479    246  ## COG0640 Predicted transcriptional regulators
                               -    Term     16856 -     16884   -1.0 
    17    13 Tu  1     .       -    CDS      17018 -     17191     98  ## ECBD_0240 hypothetical protein
                               +    Prom     16966 -     17025    4.6 
    18    14 Tu  1     .       +    CDS      17186 -     17302     83  ## 
                               +    Term     17321 -     17359    6.1 
                               -    Term     17309 -     17347    8.6 
    19    15 Op  1   7/0.000   -    CDS      17356 -     18708    502  ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1
    20    15 Op  2     .       -    CDS      18780 -     19622    920  ## COG2961 Protein involved in catabolism of external DNA
                               -    Prom     19681 -     19740    4.1 
                               +    Prom     19710 -     19769    3.1 
    21    16 Op  1   5/0.500   +    CDS      19825 -     21867   2624  ## COG0339 Zn-dependent oligopeptidases
    22    16 Op  2     .       +    CDS      21875 -     22627    793  ## COG0500 SAM-dependent methyltransferases
                               +    Term     22636 -     22671    7.4 
                               -    Term     22620 -     22664    8.9 
    23    17 Tu  1     .       -    CDS      22676 -     24145   1649  ## COG3104 Dipeptide/tripeptide permease
                               -    Prom     24266 -     24325    6.2 
                               -    Term     24400 -     24439    7.1 
    24    18 Tu  1     .       -    CDS      24462 -     24896    641  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
                               -    Prom     25093 -     25152    5.2 
                               +    Prom     25070 -     25129    2.2 
    25    19 Tu  1     .       +    CDS      25341 -     25622    230  ## G2583_4220 universal stress protein B
                               +    Term     25830 -     25861   -0.9 
                               -    Term     25689 -     25725    2.4 
    26    20 Tu  1     .       -    CDS      25866 -     27365   1665  ## COG0306 Phosphate/sulphate permeases
                               -    Prom     27475 -     27534    6.9 
                               +    Prom     27450 -     27509    8.2 
    27    21 Tu  1     .       +    CDS      27597 -     28799   1035  ## COG2081 Predicted flavoproteins
                               +    Term     28829 -     28874   -0.9 
                               -    Term     29052 -     29093    3.0 
    28    22 Tu  1     .       -    CDS      29114 -     30121    499  ## G2583_4217 inner membrane protein YhiM
                               -    Prom     30340 -     30399    9.5 
                               +    Prom     30326 -     30385   10.9 
    29    23 Tu  1     .       +    CDS      30549 -     32156    321  ## ECB_03339 hypothetical protein
                               +    Term     32223 -     32265    2.6 
                               +    Prom     32281 -     32340    5.2 
    30    24 Tu  1     .       +    CDS      32418 -     34040     56  ## JW3455 hypothetical protein
                               +    Prom     34139 -     34198    3.6 
    31    25 Op  1  10/0.000   +    CDS      34406 -     35473   1125  ## COG0845 Membrane-fusion protein
    32    25 Op  2  45/0.000   +    CDS      35470 -     38205   2736  ## COG1131 ABC-type multidrug transport system, ATPase component
    33    25 Op  3     .       +    CDS      38205 -     39329   1226  ## COG0842 ABC-type multidrug transport system, permease component
                               +    Term     39337 -     39388    3.0 
Predicted protein(s)
>gi|223713510|gb|ACDM01000088.1| GENE     1       456  -      1220     93    254 aa, chain + ## HITS:1  COG:yhiX KEGG:ns NR:ns ## COG: yhiX COG2207 # Protein_GI_number: 16131388 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     254      21     274     274     497  100.0  1e-141
MVNGEYRYFNGGDLVFADASQIRVDKCVENFVFVSRDTLSLFLPMLKEEALNLHAHKKVS
SLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQ
PNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQ
LIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQRLSNRDSAASIVAQG
NFYGTDRSAEGIRL
>gi|223713510|gb|ACDM01000088.1| GENE     2      1588  -      2316    191    242 aa, chain + ## HITS:1  COG:ECs4395 KEGG:ns NR:ns ## COG: ECs4395 COG2207 # Protein_GI_number: 15833649 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     242       1     242     242     472  100.0  1e-133
MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH
YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF
SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF
SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT
FS
>gi|223713510|gb|ACDM01000088.1| GENE     3      2461  -      2742    134     93 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|293412945|ref|ZP_06655613.1| ## NR: gi|293412945|ref|ZP_06655613.1| predicted protein [Escherichia coli B354] # 1      84       1      84      93     140   98.0  3e-32
MFGIIKLTIHTITGMWVSIVLFKLMTNGWSGFYFQCCVLSLVFLTVSWLLSGEWLAGKSK
AEPSCSTLLSFTRYAFLKRAKRCSTTTKKTGTK
>gi|223713510|gb|ACDM01000088.1| GENE     4      2679  -      5792   3112   1037 aa, chain - ## HITS:1  COG:yhiV KEGG:ns NR:ns ## COG: yhiV COG0841 # Protein_GI_number: 16131386 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1    1037       1    1037    1037    1897   99.0  0
MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS
VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE
AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS
EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRL
QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAL
DTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQ
NFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVI
AEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLL
SVFVAMSLTPALCATILKAAPEGGHKPNALFARFNTLFEKSTQHYTDSTRSLLRCTGRYM
VVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKE
KDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSINKAV
VFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGLE
DTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRML
PDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKNTGDAMK
FMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVM
LVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIE
AIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFV
PVFFVVVEHLFARFKKA
>gi|223713510|gb|ACDM01000088.1| GENE     5      5817  -      6974   1044    385 aa, chain - ## HITS:1  COG:yhiU KEGG:ns NR:ns ## COG: yhiU COG0845 # Protein_GI_number: 16131385 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1     385       1     385     385     685   99.0  0
MNRRRKLLIPLLFCGAMLTACDDKSAENATAMTPEVGVVTLSPGSVNVLSELPGRTVPYE
VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARI
TFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVS
GKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV
QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQN
VLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGL
QRIRPGIKARAISSSQENASTESKQ
>gi|223713510|gb|ACDM01000088.1| GENE     6      7313  -      7840    405    175 aa, chain - ## HITS:1  COG:ECs4392 KEGG:ns NR:ns ## COG: ECs4392 COG2771 # Protein_GI_number: 15833646 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1     175       1     175     175     302  100.0  2e-82
MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKF
LEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQ
FKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSYF
>gi|223713510|gb|ACDM01000088.1| GENE     7      8639  -      9211    554    190 aa, chain - ## HITS:1  COG:ECs4391 KEGG:ns NR:ns ## COG: ECs4391 COG3247 # Protein_GI_number: 15833645 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1     190       1     190     190     293  100.0  1e-79
MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFVSGDILSTVVGALLICS
GIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGV
IRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVSVTLVSTLVGIELIFSAASLF
SFASLFVKQQ
>gi|223713510|gb|ACDM01000088.1| GENE     8      9466  -      9798    511    110 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3953 NR:ns ## KEGG: EC55989_3953 # Name: hdeA # Def: acid-resistance protein # Organism: E.coli_55989 # Pathway: not_defined # 19     110      19     110     110     157  100.0  7e-38
MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL
NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM
>gi|223713510|gb|ACDM01000088.1| GENE     9      9902  -     10240    323    112 aa, chain + ## HITS:1  COG:no KEGG:SSON_3577 NR:ns ## KEGG: SSON_3577 # Name: hdeB # Def: acid-resistance protein # Organism: S.sonnei # Pathway: not_defined # 1     112       1     112     112     216  100.0  1e-55
MGYKMNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWW
MLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
>gi|223713510|gb|ACDM01000088.1| GENE    10     10304  -     10951    603    215 aa, chain + ## HITS:1  COG:ECs4388 KEGG:ns NR:ns ## COG: ECs4388 COG1285 # Protein_GI_number: 15833642 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1     215       1     215     215     381  100.0  1e-106
MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLD
HVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIWVTAAIGMVIGSGMYELGI
YGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLDWFKQQKIKTDLVSLQENED
HEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS
>gi|223713510|gb|ACDM01000088.1| GENE    11     10993  -     11523    370    176 aa, chain - ## HITS:1  COG:yhiF KEGG:ns NR:ns ## COG: yhiF COG2771 # Protein_GI_number: 16131379 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1     176       1     176     176     312  100.0  2e-85
MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ
IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ
HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV
>gi|223713510|gb|ACDM01000088.1| GENE    12     11679  -     12245    641    188 aa, chain - ## HITS:1  COG:ECs4377 KEGG:ns NR:ns ## COG: ECs4377 COG3065 # Protein_GI_number: 15833631 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Escherichia coli O157:H7 # 1     188      12     199     199     381  100.0  1e-106
MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVI
NVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQG
EQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPGWGAPYYTNAVS
QVTPELVK
>gi|223713510|gb|ACDM01000088.1| GENE    13     12493  -     13230    193    245 aa, chain - ## HITS:1  COG:no KEGG:ECB_03353 NR:ns ## KEGG: ECB_03353 # Name: yhiS # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     245     163     407     407     466  100.0  1e-130
MFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQN
LSGFVLTLSRFYFEDLLNINFTDANLGDTIFLHKEHPTPKLYKDGQYLDKQIEGLFSTLL
TINDNLLRAKAEIASTIIKFLEARITNLSYNDILKYQQEFQKQCYKQVKAFTTLSRYNKI
QTWAEMSEYQFEVFQYETLNPKKMSHTPYLKRPLPNEKDINYGVEIEIPSGKRIRLSNHY
QNIIP
>gi|223713510|gb|ACDM01000088.1| GENE    14     14345  -     14770    578    141 aa, chain - ## HITS:1  COG:arsC KEGG:ns NR:ns ## COG: arsC COG1393 # Protein_GI_number: 16131375 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1     141       1     141     141     273  100.0  1e-73
MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLR
KNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEILPDAQ
KGAFSKEDGEKVVDEAGKRLK
>gi|223713510|gb|ACDM01000088.1| GENE    15     14783  -     16072   1550    429 aa, chain - ## HITS:1  COG:arsB KEGG:ns NR:ns ## COG: arsB COG1055 # Protein_GI_number: 16131374 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Escherichia coli K12 # 1     429       8     436     436     680  100.0  0
MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPGDIPVVWNIVWNATAAF
IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLGAAVAALFANDGAALILTP
IVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLGFREYASVMV
PVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAIKDPATFKTGWVVLLLLLVGFFV
LEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLRGAPWQIVIFSLGMYLVVYGLRNAG
LTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSIMNNMPTVLVGALSIDGSTASGVIKEA
MVYANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTISWGYYFRTGIIMTLPVLFVTLAA
LALRLSFTL
>gi|223713510|gb|ACDM01000088.1| GENE    16     16126  -     16479    246    117 aa, chain - ## HITS:1  COG:arsR KEGG:ns NR:ns ## COG: arsR COG0640 # Protein_GI_number: 16131373 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1     117       1     117     117     225  100.0  2e-59
MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLALLRESGLL
LDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIVRNLARQNCSGDSKNICS
>gi|223713510|gb|ACDM01000088.1| GENE    17     17018  -     17191     98     57 aa, chain - ## HITS:1  COG:no KEGG:ECBD_0240 NR:ns ## KEGG: ECBD_0240 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1      57       1      57      57      92  100.0  5e-18
MHPLTHPLPVTAHVSLLDKNSLTPARASVNGTTRTSDQDFESVYAHCQSENASELTG
>gi|223713510|gb|ACDM01000088.1| GENE    18     17186  -     17302     83     38 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MHSHSIAWRKRVIDKAIIVLGALIALLELIRFLLQLLN
>gi|223713510|gb|ACDM01000088.1| GENE    19     17356  -     18708    502    450 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5     444       4     442     458 197  31 6e-50
MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIR
EAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA
KTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIAV
ELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNADG
SLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYA
VGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAR
EQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFA
VALKMGATKKDFDNTVAIHPTAAEEFVTMR
>gi|223713510|gb|ACDM01000088.1| GENE    20     18780  -     19622    920    280 aa, chain - ## HITS:1  COG:yhiR KEGG:ns NR:ns ## COG: yhiR COG2961 # Protein_GI_number: 16131371 # Func_class: R General function prediction only # Function: Protein involved in catabolism of external DNA # Organism: Escherichia coli K12 # 1     280       1     280     280     559  100.0  1e-159
MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGE
YLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELH
PSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGI
AEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGM
IVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVPE
>gi|223713510|gb|ACDM01000088.1| GENE    21     19825  -     21867   2624    680 aa, chain + ## HITS:1  COG:prlC KEGG:ns NR:ns ## COG: prlC COG0339 # Protein_GI_number: 16131370 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Escherichia coli K12 # 1     680       1     680     680    1369  100.0  0
MTNPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVD
DVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYA
TLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKL
VTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPSYLPVMTYCDNQALREEMYRAYS
TRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFENYAFKSLATKMAENPQQVLDFLTD
LAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPEN
KAVNGLFEVVKRIYGITAKERKDVDVWHPDVRFFELYDENNELRGSFYLDLYARENKRGG
AWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLT
RIETAGVSGISGVPWDAVELPSQFMENWCWEPEALAFISGHYETGEPLPKELLDKMLAAK
NYQAALFILRQLEFGLFDFRLHAEFRPDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFS
HIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFK
RFRGREPQLDAMLEHYGIKG
>gi|223713510|gb|ACDM01000088.1| GENE    22     21875  -     22627    793    250 aa, chain + ## HITS:1  COG:ECs4369 KEGG:ns NR:ns ## COG: ECs4369 COG0500 # Protein_GI_number: 15833623 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 # 1     250       1     250     250     484  100.0  1e-137
MKICLIDETGTGDGALSVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFV
GGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNP
VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKS
ALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGH
RFDIYAGTPV
>gi|223713510|gb|ACDM01000088.1| GENE    23     22676  -     24145   1649    489 aa, chain - ## HITS:1  COG:yhiP KEGG:ns NR:ns ## COG: yhiP COG3104 # Protein_GI_number: 16131368 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1     489       1     489     489     867  100.0  0
MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQLGFSQEQAFVTFGAFA
ALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG
LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIALSLAPVIADRFGYSVTYNLCG
AGLIIALLVYIACRGMVKDIGSEPDFRPMSFSKLLYVLLGSVVMIFVCAWLMHNVEVANL
VLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNV
HHEILGFSINPVSFQALNPFWVVLASPILAGIYTHLGNKGKDLSMPMKFTLGMFMCSLGF
LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW
FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMLLMVPWLK
RMIATPESH
>gi|223713510|gb|ACDM01000088.1| GENE    24     24462  -     24896    641    144 aa, chain - ## HITS:1  COG:ECs4367 KEGG:ns NR:ns ## COG: ECs4367 COG0589 # Protein_GI_number: 15833621 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1     144       1     144     144     271  100.0  3e-73
MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQK
RISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLM
SSARQLINTVHVDMLIVPLRDEEE
>gi|223713510|gb|ACDM01000088.1| GENE    25     25341  -     25622    230     93 aa, chain + ## HITS:1  COG:no KEGG:G2583_4220 NR:ns ## KEGG: G2583_4220 # Name: uspB # Def: universal stress protein B # Organism: E.coli_O55_H7 # Pathway: not_defined # 1      93      19     111     111     184  100.0  1e-45
MARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDE
FIRRCERVRRQFILTSALCGLVVVSLIALMIWH
>gi|223713510|gb|ACDM01000088.1| GENE    26     25866  -     27365   1665    499 aa, chain - ## HITS:1  COG:ECs4365 KEGG:ns NR:ns ## COG: ECs4365 COG0306 # Protein_GI_number: 15833619 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Escherichia coli O157:H7 # 1     499       1     499     499     893  100.0  0
MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMRSQLAVVMAAVF
NFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLLAAIIWNLGTWYFGLPASS
SHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLIVSPIVGLVFAGGLIFLLRRY
WSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSAIGVAFSHGANDGQKGIGLVMLV
LIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQHPALLKQATGADQLVPAPEAGATQ
PAEFHCHPSNTINALNRLKGMLTTDVESYDKLSLDQRSQMRRIMLCVSDTIDKVVKMPGV
SADDQRLLKKLKSDMLSTIEYAPVWIIMAVALALGIGTMIGWRRVATTIGEKIGKKGMTY
AQGMSAQMTAAVSIGLASYTGMPVSTTHVLSSSVAGTMVVDGGGLQRKTVTSILMAWVFT
LPAAVLLSGGLYWLSLQFL
>gi|223713510|gb|ACDM01000088.1| GENE    27     27597  -     28799   1035    400 aa, chain + ## HITS:1  COG:yhiN KEGG:ns NR:ns ## COG: yhiN COG2081 # Protein_GI_number: 16131364 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Escherichia coli K12 # 1     400       1     400     400     810  100.0  0
MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPG
AYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEK
GNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQF
GLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAV
LQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQ
IPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVP
GLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS
>gi|223713510|gb|ACDM01000088.1| GENE    28     29114  -     30121    499    335 aa, chain - ## HITS:1  COG:no KEGG:G2583_4217 NR:ns ## KEGG: G2583_4217 # Name: yhiM # Def: inner membrane protein YhiM # Organism: E.coli_O55_H7 # Pathway: not_defined # 1     335      49     383     383     583  100.0  1e-165
MGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTL
FPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIP
KNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLG
LTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLA
PGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQT
DMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK
>gi|223713510|gb|ACDM01000088.1| GENE    29     30549  -     32156    321    535 aa, chain + ## HITS:1  COG:no KEGG:ECB_03339 NR:ns ## KEGG: ECB_03339 # Name: yhiKL # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     535       1     535     535    1070  100.0  0
MKAIDNQIRNISSSHQDKHSDKVNSHQHHGKVDKTHRAKIVEFDKLDNDSQIDNDFGLHI
IYFLQHGHWKVNDRSHQMEKVWFYNSEPSIDIQEYNRFADNTTDTFIFTIIPDNNHVLKL
SSPITVTVECKGGYYFINSSGDKSDIIYKVDGLSIIARNFFTLLSGNFKPDWRWDVSKET
FTKEKFDSYVKSVFSKIDFYKQCGVINPQNANTAYFGDTDGRVGAVLYALLVSGHIGIRE
KGWSLLCELLKHEEMASSAYKHKNNKVLYDLLNTRDMILNELHQHVFLKDDAITPCIFLG
DHTGDRFSTIFGDKYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGNYTARLANH
KLSAGDTYNLIKTLDVCNYDSERQVLTSHHGIIRDEEKKCYCLGALQVPFNQMKNPTDPE
ELANIFNKKHKEHMDDPLFHLIRSNTLKPTPVYANYFDNTTDFRPARERIFICGETLKGE
DPSKYIRQKYGHHGPGVDHNQQFDNGIMGLNSLKEARDKNNKIIYSSGLSCFQPH
>gi|223713510|gb|ACDM01000088.1| GENE    30     32418  -     34040     56    540 aa, chain + ## HITS:1  COG:no KEGG:JW3455 NR:ns ## KEGG: JW3455 # Name: yhiJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     540       1     540     540    1099   99.0  0
MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKI
DDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRNNNYQFIVTINSKNYGCS
LDNTDVNWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVSDIKFETMIKPQFA
DRIYFSNCLPVDPTSTRPTYFGDTDGSVGAVLFALFATGHLGIMAEGENFLSQLLNIEDE
VLNVLLRENFNEQLNTNVNTIISILNRRDIILESLQPYLVINKDAVTPCTFLGDQTGDRF
SNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGNYMQNFTRMKPLDEDTYSGIKDYP
VCFYDPKYKIMANHHGITFDDQRKRYIIGPITVSIDEMTNALDPVELAAIINKKHHAIIN
GKKFKTSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHNGNGGRERIGETG
TVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRNGLMPLIRRRTMLQL
>gi|223713510|gb|ACDM01000088.1| GENE    31     34406  -     35473   1125    355 aa, chain + ## HITS:1  COG:yhiI KEGG:ns NR:ns ## COG: yhiI COG0845 # Protein_GI_number: 16131359 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1     355       1     355     355     566   99.0  1e-161
MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT
ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS
LVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA
IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL
NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET
SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
>gi|223713510|gb|ACDM01000088.1| GENE    32     35470  -     38205   2736    911 aa, chain + ## HITS:1  COG:yhiH_1 KEGG:ns NR:ns ## COG: yhiH_1 COG1131 # Protein_GI_number: 16131358 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Escherichia coli K12 # 18     549       1     532     532    1085   99.0  0
MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISG
ARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHD
KAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDP
LSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAEELRQQTQ
SATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIAIEARDLTMRFGSFVAVDHVNFRIP
RGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRRVGYMSQAFSL
YNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAV
AVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRISLM
HAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSL
RRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQ
AWTLNLSGSRYFIEQPPLTSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWID
GAMPSRAETVKGYVQAMHQSWLQDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPA
VIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLC
GLSVFVFGVPHKGSFLTLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQ
FSGMIDPVASLEGPGRWIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMG
LSILLLKKQEG
>gi|223713510|gb|ACDM01000088.1| GENE    33     38205  -     39329   1226    374 aa, chain + ## HITS:1  COG:yhhJ KEGG:ns NR:ns ## COG: yhhJ COG0842 # Protein_GI_number: 16131357 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli K12 # 1     374       2     375     375     667  100.0  0
MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTPGSLNLAPIAIADMDQS
QLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIPPNFQRDVLAGRQPDIQVN
VDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVSLETRMRFNPNLDPAWFGGVM
AIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSL
VLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQM
LSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAILYRGAGFEIVWPQFLTLMAIGGAFFT
IALLRFRKTIGTMA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:29:41 2011
 Seq name: gi|223713509|gb|ACDM01000089.1| Escherichia sp. 4_1_40B cont1.89, whole genome shotgun sequence 
 Length of sequence - 1607 bp
 Number of predicted genes - 3, with homology - 3
 Number of transcription units - 2, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS        134 -       379    116  ## COG1413 FOG: HEAT repeat
     2     2 Op  1     .       -    CDS        484 -       750    182  ## JW3449 hypothetical protein
     3     2 Op  2     .       -    CDS        839 -      1606     17  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713509|gb|ACDM01000089.1| GENE     1       134  -       379    116     81 aa, chain - ## HITS:1  COG:ZyibA KEGG:ns NR:ns ## COG: ZyibA COG1413 # Protein_GI_number: 15804135 # Func_class: C Energy production and conversion # Function: FOG: HEAT repeat # Organism: Escherichia coli O157:H7 EDL933 # 1      81       1      81     280     149   96.0  1e-36
MSNTYQKRKASKEYGLYNKCKKLNDDELFRLLDDRNSLKRISSARVLQLRGGQDAVRLAI
EFCTDKNYIRRDIGAFILGQI
>gi|223713509|gb|ACDM01000089.1| GENE     2       484  -       750    182     88 aa, chain - ## HITS:1  COG:no KEGG:JW3449 NR:ns ## KEGG: JW3449 # Name: yhhH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1      88      40     127     127     172  100.0  4e-42
MRKYESEGKYTVRNLVKNKAIALELAEIYVKNRYGQDAAEEEKPYEITELTTSWVVEGTI
HSDQIAGGVFIIEIGKNDGRILNFGHGK
>gi|223713509|gb|ACDM01000089.1| GENE     3       839  -      1606     17    255 aa, chain - ## HITS:1  COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     255    1157    1411    1411     541   99.0  1e-154
LISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGR
YITQDPIGLKGGWNLYGYQLNPISDIDPLGLSMWEDAKSGACTNGLCGTLSAMIGPDKFD
SIDSTAYGALNKINNQSICEDKEFAGLICKDNSGRYFSTAPNRGERKGSYPFNSPCPNGT
EKVSAYHTHGADSHGEYWDEIFSGKDEKIVKSKDNNIKSFYLGTPSGNFKAIDNHGKEIT
NRKGLPNVCRVHGNM
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:30:32 2011
 Seq name: gi|223713508|gb|ACDM01000090.1| Escherichia sp. 4_1_40B cont1.90, whole genome shotgun sequence 
 Length of sequence - 147297 bp
 Number of predicted genes - 142, with homology - 142
 Number of transcription units - 68, operones - 30 average op.length -  3.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   3/0.720   -    CDS        284 -       685    451  ## COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
     2     1 Op  2  17/0.000   -    CDS        691 -      1497    404  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
     3     1 Op  3  44/0.000   -    CDS       1494 -      2258    355  ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17
     4     1 Op  4  49/0.000   -    CDS       2258 -      3091   1073  ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
     5     1 Op  5  38/0.000   -    CDS       3088 -      4032    254  ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21
     6     1 Op  6     .       -    CDS       4032 -      5606   1826  ## COG0747 ABC-type dipeptide transport system, periplasmic component
                               -    Prom      5636 -      5695    4.7 
     7     2 Tu  1     .       +    CDS       5631 -      5807     61  ## UTI89_C3992 hypothetical protein
                               +    Term      5897 -      5933    2.0 
                               -    Term      5631 -      5671    3.0 
     8     3 Op  1   1/0.880   -    CDS       5717 -      6304    515  ## COG2091 Phosphopantetheinyl transferase
     9     3 Op  2     .       -    CDS       6359 -      7408   1009  ## COG0628 Predicted permease
                               -    Prom      7429 -      7488    2.9 
                               +    Prom      7455 -      7514    2.2 
    10     4 Tu  1     .       +    CDS       7540 -      8757   1228  ## COG0477 Permeases of the major facilitator superfamily
                               +    Term      8804 -      8848    5.1 
                               -    Term      8700 -      8747    7.6 
    11     5 Op  1     .       -    CDS       8761 -      9318    756  ## ECO103_4192 hypothetical protein
    12     5 Op  2     .       -    CDS       9391 -     10056    667  ## COG1738 Uncharacterized conserved protein
                               -    Prom     10118 -     10177    4.4 
                               +    Prom     10194 -     10253    6.1 
    13     6 Tu  1     .       +    CDS      10277 -     10522    355  ## COG0425 Predicted redox protein, regulator of disulfide bond formation
                               +    Term     10587 -     10636    7.2 
    14     7 Op  1   5/0.360   -    CDS      10624 -     12822   2453  ## COG2217 Cation transport ATPase
                               -    Term     12854 -     12885    3.4 
    15     7 Op  2     .       -    CDS      12896 -     13522    725  ## COG3714 Predicted membrane protein
                               +    Prom     13580 -     13639    3.4 
    16     8 Tu  1     .       +    CDS      13663 -     14022    373  ## JW3432 conserved hypothetical protein
                               +    Term     14103 -     14135   -1.0 
    17     9 Op  1   6/0.160   -    CDS      14025 -     14294    351  ## COG3776 Predicted membrane protein
    18     9 Op  2     .       -    CDS      14284 -     14880    190  ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29
                               -    Prom     15010 -     15069    3.2 
                               +    Prom     14899 -     14958    5.1 
    19    10 Op  1   9/0.000   +    CDS      15030 -     16523    747  ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28
    20    10 Op  2  28/0.000   +    CDS      16526 -     17194    348  ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc)
    21    10 Op  3   7/0.040   +    CDS      17187 -     18245   1044  ## COG2177 Cell division protein
                               +    Term     18289 -     18328    3.7 
                               +    Prom     18334 -     18393    6.2 
    22    11 Tu  1     .       +    CDS      18490 -     19344   1067  ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
                               +    Term     19361 -     19402    6.3 
                               +    Prom     19453 -     19512    5.1 
    23    12 Tu  1     .       +    CDS      19615 -     20718   1404  ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component
                               -    Term     20714 -     20745    2.1 
    24    13 Tu  1     .       -    CDS      20906 -     21289    317  ## JW3424 conserved hypothetical protein
                               -    Prom     21328 -     21387    5.4 
                               +    Prom     21634 -     21693    2.1 
    25    14 Op  1  20/0.000   +    CDS      21713 -     22822   1278  ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component
    26    14 Op  2  24/0.000   +    CDS      22870 -     23796   1358  ## COG0559 Branched-chain amino acid ABC-type transport system, permease components
    27    14 Op  3  19/0.000   +    CDS      23793 -     25070   1519  ## COG4177 ABC-type branched-chain amino acid transport system, permease component
    28    14 Op  4  18/0.000   +    CDS      25067 -     25834    258  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
    29    14 Op  5     .       +    CDS      25836 -     26549    267  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               +    Term     26623 -     26665   -0.8 
                               +    Prom     26813 -     26872    7.3 
    30    15 Op  1  35/0.000   +    CDS      26948 -     28264   1719  ## COG1653 ABC-type sugar transport system, periplasmic component
                               +    Prom     28266 -     28325    2.6 
    31    15 Op  2  38/0.000   +    CDS      28362 -     29249   1082  ## COG1175 ABC-type sugar transport systems, permease components
    32    15 Op  3  21/0.000   +    CDS      29246 -     30091    940  ## COG0395 ABC-type sugar transport system, permease component
    33    15 Op  4   4/0.600   +    CDS      30093 -     31163   1486  ## COG3839 ABC-type sugar transport systems, ATPase components
    34    15 Op  5     .       +    CDS      31160 -     31903    754  ## COG0584 Glycerophosphoryl diester phosphodiesterase
                               +    Term     31925 -     31968    8.1 
                               -    Term     31799 -     31842    8.7 
    35    16 Tu  1     .       -    CDS      31890 -     32330    312  ## S4297 hypothetical protein
                               -    Prom     32353 -     32412    3.7 
                               +    Prom     32304 -     32363    2.2 
    36    17 Tu  1     .       +    CDS      32450 -     34192   1782  ## COG0405 Gamma-glutamyltransferase
                               +    Term     34201 -     34234    5.4 
    37    18 Tu  1     .       -    CDS      34230 -     34514    263  ## B21_03248 hypothetical protein
                               -    Prom     34542 -     34601    3.4 
    38    19 Op  1     .       -    CDS      34714 -     34869     60  ## EC55989_3853 hypothetical protein
                               -    Prom     34892 -     34951    1.7 
    39    19 Op  2     .       -    CDS      34964 -     35419    218  ## ECIAI1_3588 hypothetical protein
    40    19 Op  3   1/0.880   -    CDS      35455 -     36633    263  ## COG3157 Hemolysin-coregulated protein (uncharacterized)
                               -    Prom     36708 -     36767   16.1 
                               -    Term     36804 -     36840   -1.0 
    41    20 Tu  1     .       -    CDS      36870 -     37358    347  ## PROTEIN SUPPORTED gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase
                               -    Prom     37388 -     37447    3.2 
    42    21 Tu  1     .       -    CDS      37592 -     37789    162  ## ECS88_3838 hypothetical protein
                               +    Prom     37421 -     37480    4.4 
    43    22 Tu  1   5/0.360   +    CDS      37691 -     38728   1091  ## COG0673 Predicted dehydrogenases and related proteins
                               +    Term     38735 -     38787    3.6 
                               +    Prom     38741 -     38800    4.5 
    44    23 Tu  1   4/0.600   +    CDS      38851 -     39546    896  ## COG1741 Pirin-related protein
                               +    Term     39567 -     39596    0.4 
                               +    Prom     39639 -     39698    4.4 
    45    24 Tu  1     .       +    CDS      39770 -     40765    964  ## COG1609 Transcriptional regulators
                               +    Prom     40794 -     40853    2.0 
    46    25 Op  1   4/0.600   +    CDS      40943 -     41431    484  ## COG3265 Gluconate kinase
                               +    Term     41460 -     41497    3.9 
    47    25 Op  2     .       +    CDS      41498 -     42775   1571  ## COG2610 H+/gluconate symporter and related permeases
                               +    Term     42785 -     42820    5.2 
    48    26 Tu  1     .       -    CDS      42832 -     43425    624  ## COG2095 Multiple antibiotic transporter
                               -    Prom     43588 -     43647    3.4 
                               +    Prom     43393 -     43452    3.7 
    49    27 Tu  1     .       +    CDS      43618 -     44721   1146  ## COG0136 Aspartate-semialdehyde dehydrogenase
                               +    Term     44740 -     44769    1.1 
                               +    Prom     44780 -     44839    3.1 
    50    28 Op  1   9/0.000   +    CDS      44994 -     47180   2638  ## COG0296 1,4-alpha-glucan branching enzyme
    51    28 Op  2   7/0.040   +    CDS      47177 -     49150   1409  ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases
    52    28 Op  3  17/0.000   +    CDS      49168 -     50463   1240  ## COG0448 ADP-glucose pyrophosphorylase
    53    28 Op  4  10/0.000   +    CDS      50463 -     51896   1336  ## COG0297 Glycogen synthase
    54    28 Op  5   2/0.800   +    CDS      51915 -     54362   2886  ## COG0058 Glucan phosphorylase
                               +    Term     54378 -     54413    4.9 
                               +    Prom     54409 -     54468    2.4 
    55    29 Tu  1     .       +    CDS      54491 -     54772    164  ## COG0226 ABC-type phosphate transport system, periplasmic component
                               +    Term     54810 -     54849    1.2 
                               -    Term     54843 -     54880   -0.9 
    56    30 Tu  1     .       -    CDS      54978 -     56483   1714  ## COG0578 Glycerol-3-phosphate dehydrogenase
                               -    Prom     56526 -     56585    5.7 
                               +    Prom     56512 -     56571    4.6 
    57    31 Op  1   4/0.600   +    CDS      56673 -     56999    512  ## COG0607 Rhodanese-related sulfurtransferase
    58    31 Op  2   6/0.160   +    CDS      57044 -     57874    837  ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)
    59    31 Op  3     .       +    CDS      57891 -     58649    831  ## COG1349 Transcriptional regulators of sugar metabolism
                               +    Term     58814 -     58848   -1.0 
    60    32 Tu  1     .       -    CDS      58631 -     60229   1274  ## COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain
                               -    Prom     60326 -     60385    4.4 
                               +    Prom     60296 -     60355    5.2 
    61    33 Op  1   3/0.720   +    CDS      60418 -     61644   1317  ## COG1690 Uncharacterized conserved protein
    62    33 Op  2     .       +    CDS      61648 -     62664    788  ## COG0430 RNA 3'-terminal phosphate cyclase
                               +    Term     62820 -     62858   -0.6 
                               -    Term     62661 -     62704    0.5 
    63    34 Tu  1     .       -    CDS      62707 -     65412   2527  ## COG2909 ATP-dependent transcriptional regulator
                               -    Prom     65437 -     65496    6.1 
                               +    Prom     65845 -     65904    2.7 
    64    35 Op  1   7/0.040   +    CDS      66024 -     68417   2783  ## COG0058 Glucan phosphorylase
    65    35 Op  2     .       +    CDS      68427 -     70511   2030  ## COG1640 4-alpha-glucanotransferase
                               -    Term     70390 -     70433    1.6 
    66    36 Tu  1     .       -    CDS      70622 -     71938   1806  ## COG2610 H+/gluconate symporter and related permeases
                               -    Prom     71990 -     72049    4.0 
                               -    Term     72198 -     72233    0.7 
    67    37 Op  1   5/0.360   -    CDS      72298 -     72873    708  ## COG0694 Thioredoxin-like proteins and domains
    68    37 Op  2     .       -    CDS      72932 -     73615    241  ## COG1040 Predicted amidophosphoribosyltransferases
                               +    Prom     73563 -     73622    2.9 
    69    38 Tu  1     .       +    CDS      73653 -     74423    559  ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
    70    39 Tu  1     .       -    CDS      74452 -     75330    740  ## COG5464 Uncharacterized conserved protein
                               -    Prom     75447 -     75506    2.4 
                               -    Term     75469 -     75506    6.1 
    71    40 Op  1     .       -    CDS      75533 -     75769    231  ## SDY_3666 hypothetical protein
    72    40 Op  2  22/0.000   -    CDS      75769 -     78090   2856  ## COG0370 Fe2+ transport system protein B
    73    40 Op  3   4/0.600   -    CDS      78107 -     78334    237  ## COG1918 Fe2+ transport system protein A
                               -    Term     78658 -     78692    6.0 
    74    41 Op  1   1/0.880   -    CDS      78791 -     81112   1644  ## PROTEIN SUPPORTED gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein
                               -    Prom     81145 -     81204    2.0 
    75    41 Op  2     .       -    CDS      81209 -     81685    679  ## COG0782 Transcription elongation factor
                               -    Prom     81767 -     81826    4.9 
                               +    Prom     81749 -     81808   11.2 
    76    42 Op  1  40/0.000   +    CDS      81913 -     82632    897  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
    77    42 Op  2     .       +    CDS      82629 -     83981   1336  ## COG0642 Signal transduction histidine kinase
                               +    Term     83983 -     84027    7.1 
                               -    Term     83975 -     84008    4.4 
    78    43 Tu  1     .       -    CDS      84057 -     85679   2004  ## COG1866 Phosphoenolpyruvate carboxykinase (ATP)
                               -    Prom     85835 -     85894    4.0 
                               +    Prom     85777 -     85836    5.7 
    79    44 Tu  1     .       +    CDS      86058 -     87782   1446  ## B21_03206 hypothetical protein
                               -    Term     87801 -     87836    7.4 
    80    45 Op  1   3/0.720   -    CDS      87845 -     88723   1086  ## COG1281 Disulfide bond chaperones of the HSP33 family
    81    45 Op  2   4/0.600   -    CDS      88748 -     89149    448  ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
    82    45 Op  3     .       -    CDS      89160 -     89828    938  ## COG1011 Predicted hydrolase (HAD superfamily)
                               -    Term     89842 -     89888   10.1 
    83    45 Op  4     .       -    CDS      89893 -     92028   1763  ## JW3361 predicted inner membrane protein
                               -    Prom     92247 -     92306    5.3 
                               +    Prom     92206 -     92265    7.0 
    84    46 Tu  1     .       +    CDS      92348 -     92908    659  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
                               +    Term     92922 -     92958    1.9 
                               -    Term     93034 -     93073    3.0 
    85    47 Tu  1     .       -    CDS      93074 -     95626   2635  ## COG5009 Membrane carboxypeptidase/penicillin-binding protein
                               -    Prom     95650 -     95709    3.4 
                               +    Prom     95614 -     95673    2.0 
    86    48 Op  1     .       +    CDS      95746 -     96525    700  ## JW5693 predicted pilus assembly protein
    87    48 Op  2     .       +    CDS      96525 -     97064    288  ## COG3166 Tfp pilus assembly protein PilN
    88    48 Op  3     .       +    CDS      97048 -     97488    191  ## ECO103_4111 hypothetical protein
    89    48 Op  4     .       +    CDS      97478 -     97882    276  ## SDY_3687 hypothetical protein
    90    48 Op  5   8/0.000   +    CDS      97794 -     99032   1085  ## COG4796 Type II secretory pathway, component HofQ
                               +    Term     99112 -     99145    0.6 
                               +    Prom     99271 -     99330    3.9 
    91    48 Op  6  20/0.000   +    CDS      99433 -     99954    542  ## COG0703 Shikimate kinase
    92    48 Op  7   7/0.040   +    CDS     100011 -    101099    920  ## COG0337 3-dehydroquinate synthetase
                               +    Term    101115 -    101145    2.7 
    93    49 Tu  1   6/0.160   +    CDS     101191 -    102477   1069  ## COG3266 Uncharacterized protein conserved in bacteria
                               +    Term    102518 -    102556   -0.9 
    94    50 Op  1   6/0.160   +    CDS     102584 -    103420    633  ## COG0338 Site-specific DNA methylase
    95    50 Op  2   9/0.000   +    CDS     103438 -    104115    800  ## COG0036 Pentose-5-phosphate-3-epimerase
    96    50 Op  3   6/0.160   +    CDS     104108 -    104866    945  ## COG0546 Predicted phosphatases
    97    50 Op  4     .       +    CDS     104859 -    105863   1175  ## COG0180 Tryptophanyl-tRNA synthetase
                               +    Term    105962 -    105998    2.4 
                               +    Prom    105921 -    105980    9.1 
    98    51 Op  1     .       +    CDS     106153 -    107058    786  ## B21_03187 hypothetical protein
    99    51 Op  2     .       +    CDS     107075 -    107437    381  ## UTI89_C3880 hypothetical protein
   100    51 Op  3   2/0.800   +    CDS     107516 -    108679   1176  ## COG3457 Predicted amino acid racemase
   101    51 Op  4   1/0.880   +    CDS     108679 -    109905   1247  ## COG1015 Phosphopentomutase
   102    51 Op  5     .       +    CDS     109902 -    110780   1024  ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold
   103    51 Op  6     .       +    CDS     110791 -    111144    511  ## UTI89_C3876 hypothetical protein
   104    51 Op  7     .       +    CDS     111156 -    112460   1412  ## EC55989_3782 conserved hypothetical protein; putative inner membrane protein
   105    51 Op  8     .       +    CDS     112472 -    113557    976  ## JW3339 conserved hypothetical protein
                               +    Term    113660 -    113702   13.2 
                               -    Term    113643 -    113696   11.2 
   106    52 Tu  1   1/0.880   -    CDS     113709 -    114440    690  ## COG2188 Transcriptional regulators
                               -    Prom    114466 -    114525    3.6 
                               -    Term    114492 -    114533    9.5 
   107    53 Op  1   5/0.360   -    CDS     114540 -    115325    824  ## COG0524 Sugar kinases, ribokinase family
   108    53 Op  2   2/0.800   -    CDS     115322 -    116152    968  ## COG1082 Sugar phosphate isomerases/epimerases
   109    53 Op  3   2/0.800   -    CDS     116202 -    117224   1203  ## COG2222 Predicted phosphosugar isomerases
   110    53 Op  4     .       -    CDS     117245 -    118582   1520  ## COG0531 Amino acid transporters
                               -    Prom    118655 -    118714    4.8 
                               -    Term    118800 -    118835    5.5 
   111    54 Tu  1     .       -    CDS     118877 -    119044    243  ## LF82_3285 uncharacterized protein YhfL
                               -    Prom    119078 -    119137    7.6 
                               -    Term    119252 -    119281    2.1 
   112    55 Op  1   3/0.720   -    CDS     119291 -    120664   1467  ## COG0007 Uroporphyrinogen-III methylase
   113    55 Op  2   3/0.720   -    CDS     120683 -    121489    956  ## COG2116 Formate/nitrite family of transporters
                               -    Prom    121512 -    121571   10.8 
                               -    Term    121575 -    121605    3.4 
   114    56 Op  1  14/0.000   -    CDS     121615 -    121941    478  ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
   115    56 Op  2   4/0.600   -    CDS     121938 -    124481   3090  ## COG1251 NAD(P)H-nitrite reductase
                               -    Prom    124574 -    124633    3.9 
                               -    Term    124696 -    124734    7.0 
   116    57 Tu  1     .       -    CDS     124743 -    125924   1309  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom    126031 -    126090    7.3 
                               +    Prom    126057 -    126116    5.8 
   117    58 Tu  1     .       +    CDS     126195 -    126767    573  ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
                               +    Term    126777 -    126810    6.8 
                               +    Prom    126786 -    126845    2.9 
   118    59 Op  1     .       +    CDS     126872 -    127039    129  ## SDY_3524 hypothetical protein
   119    59 Op  2   4/0.600   +    CDS     127029 -    127631    735  ## COG2184 Protein involved in cell division
   120    59 Op  3   5/0.360   +    CDS     127663 -    128226    484  ## COG0512 Anthranilate/para-aminobenzoate synthases component II
                               +    Prom    128228 -    128287    7.0 
   121    59 Op  4     .       +    CDS     128312 -    129532   1328  ## COG4992 Ornithine/acetylornithine aminotransferase
                               +    Term    129557 -    129598    3.2 
   122    60 Op  1   4/0.600   -    CDS     129599 -    131689   1679  ## COG1289 Predicted membrane protein
                               -    Term    131691 -    131728    8.2 
   123    60 Op  2     .       -    CDS     131740 -    132372    878  ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
                               -    Prom    132522 -    132581    1.8 
   124    61 Tu  1     .       +    CDS     132674 -    133078    444  ## COG1765 Predicted redox protein, regulator of disulfide bond formation
                               +    Term    133089 -    133144    2.7 
                               -    Term    133026 -    133057   -0.8 
   125    62 Tu  1   6/0.160   -    CDS     133133 -    134002    870  ## COG3954 Phosphoribulokinase
   126    63 Op  1   5/0.360   -    CDS     134056 -    134274    336  ## COG3089 Uncharacterized protein conserved in bacteria
   127    63 Op  2   3/0.720   -    CDS     134268 -    135230    930  ## COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold
   128    63 Op  3     .       -    CDS     135290 -    137203   2447  ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains
                               -    Prom    137307 -    137366    3.4 
                               +    Prom    137193 -    137252    4.7 
   129    64 Op  1   7/0.040   +    CDS     137334 -    137885    455  ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)
   130    64 Op  2   3/0.720   +    CDS     137885 -    139690   1056  ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2
   131    64 Op  3   4/0.600   +    CDS     139700 -    139900    225  ## COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain
                               +    Term    139938 -    139979    0.7 
                               +    Prom    139907 -    139966    3.9 
   132    65 Tu  1     .       +    CDS     139995 -    140585    732  ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2
                               +    Term    140607 -    140635    2.1 
                               -    Term    140582 -    140630   10.2 
   133    66 Tu  1     .       -    CDS     140634 -    140852    315  ## COG2900 Uncharacterized protein conserved in bacteria
                               -    Prom    140960 -    141019    3.3 
                               +    Prom    140922 -    140981    3.4 
   134    67 Tu  1     .       +    CDS     141073 -    141885   1002  ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1
                               +    Term    141893 -    141932    9.8 
                               +    Prom    141891 -    141950    5.5 
   135    68 Op  1   6/0.160   +    CDS     142052 -    142774    772  ## COG2964 Uncharacterized protein conserved in bacteria
   136    68 Op  2  13/0.000   +    CDS     142774 -    143160    389  ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction
   137    68 Op  3  10/0.000   +    CDS     143160 -    143519    215  ## COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur
   138    68 Op  4   7/0.040   +    CDS     143527 -    143814    281  ## COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur
   139    68 Op  5  56/0.000   +    CDS     143880 -    144314    744  ## PROTEIN SUPPORTED gi|226956878|ref|YP_002807671.1| 30S ribosomal subunit protein S12
                               +    Prom    144323 -    144382    2.1 
   140    68 Op  6  51/0.000   +    CDS     144411 -    144881    777  ## PROTEIN SUPPORTED gi|15803854|ref|NP_289888.1| 30S ribosomal protein S7
                               +    Term    144907 -    144942    3.1 
                               +    Prom    144895 -    144954    1.6 
   141    68 Op  7  30/0.000   +    CDS     144978 -    147092   2340  ## COG0480 Translation elongation factors (GTPases)
   142    68 Op  8     .       +    CDS     147163 -    147297    176  ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19
Predicted protein(s)
>gi|223713508|gb|ACDM01000090.1| GENE     1       284  -       685    451    133 aa, chain - ## HITS:1  COG:ECs4348 KEGG:ns NR:ns ## COG: ECs4348 COG0864 # Protein_GI_number: 15833602 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain # Organism: Escherichia coli O157:H7 # 1     133       1     133     133     205  100.0  2e-53
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVY
EHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRG
VRHGHLQCLPKED
>gi|223713508|gb|ACDM01000090.1| GENE     2       691  -      1497    404    268 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 27     232     294     500     563 160  41 5e-74
MTLLNISGLSHHYAHGGFNGKHQHQAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVG
LESPAQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREILREPMRHLL
SLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS
NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQVVGEKL
TFSSDAGRVLQNAVLPAFPVRRRTTEKV
>gi|223713508|gb|ACDM01000090.1| GENE     3      1494  -      2258    355    254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 5     240       9     258     563 141  34 5e-74
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQT
AGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA
AIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARIL
DLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS
>gi|223713508|gb|ACDM01000090.1| GENE     4      2258  -      3091   1073    277 aa, chain - ## HITS:1  COG:ECs4345 KEGG:ns NR:ns ## COG: ECs4345 COG1173 # Protein_GI_number: 15833599 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1     277       1     277     277     461  100.0  1e-130
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLG
RDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTS
ILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVF
VDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
>gi|223713508|gb|ACDM01000090.1| GENE     5      3088  -      4032    254    314 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 68     304      43     310     320 102  26 1e-20
MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL
DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG
IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPA
VSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGM
HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNA
ALDPRIRRHEGAHA
>gi|223713508|gb|ACDM01000090.1| GENE     6      4032  -      5606   1826    524 aa, chain - ## HITS:1  COG:nikA KEGG:ns NR:ns ## COG: nikA COG0747 # Protein_GI_number: 16131348 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1     524       1     524     524    1045  100.0  0
MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLV
KYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRAVLDNRQRH
AWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKA
PIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLY
GNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSL
IDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQ
PLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTW
GAPYDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRL
HDEAVYLPISYISMMVVSKPELGNIPYAPIATEIPFEQIKPVKP
>gi|223713508|gb|ACDM01000090.1| GENE     7      5631  -      5807     61     58 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C3992 NR:ns ## KEGG: UTI89_C3992 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1      58       1      58      58     102  100.0  3e-21
MAEISMTILSIRHTDYLFWINRWAVGWADQLTESIHCTLSAVSVKGVGVQIARLKFSS
>gi|223713508|gb|ACDM01000090.1| GENE     8      5717  -      6304    515    195 aa, chain - ## HITS:1  COG:yhhU KEGG:ns NR:ns ## COG: yhhU COG2091 # Protein_GI_number: 16131347 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Escherichia coli K12 # 1     195       1     195     195     387  100.0  1e-108
MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHTLSPLPEIIYGEQGKPA
FAPEMPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWRWLANAVFSLGEHAEMDAV
HPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSSLSVSHCQLENLSLAICTPTP
FTLTADSVQWIDSVN
>gi|223713508|gb|ACDM01000090.1| GENE     9      6359  -      7408   1009    349 aa, chain - ## HITS:1  COG:yhhT KEGG:ns NR:ns ## COG: yhhT COG0628 # Protein_GI_number: 16131346 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 1     349      28     376     376     581  100.0  1e-166
METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQ
RPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMS
PERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQ
IHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIG
AVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLL
IWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKLAILLGPGRPKSRLPG
>gi|223713508|gb|ACDM01000090.1| GENE    10      7540  -      8757   1228    405 aa, chain + ## HITS:1  COG:yhhS KEGG:ns NR:ns ## COG: yhhS COG0477 # Protein_GI_number: 16131345 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     405      15     419     419     673  100.0  0
MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYVHDVMGFSAFWAGLVIS
LQYFATLLSRPHAGRYADSLGPKKIVVFGLCGCFLSGLGYLTAGLTASLPVISLLLLCLG
RVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQ
ALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLGRVWLYGMALALASAGFGVIATF
ITLFYDAKGWDGAAFALTLFSCAFVGTRLLFPNGINRIGGLNVAMICFSVEIIGLLLVGV
ATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGVTGPLA
GLVMSWAGVPVIYLAAAGLVAIALLLTWRLKKRPPEHVPEAASSS
>gi|223713508|gb|ACDM01000090.1| GENE    11      8761  -      9318    756    185 aa, chain - ## HITS:1  COG:no KEGG:ECO103_4192 NR:ns ## KEGG: ECO103_4192 # Name: dcrB # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     185      15     199     199     324  100.0  1e-87
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTD
QSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNK
AIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIIN
TLVIQ
>gi|223713508|gb|ACDM01000090.1| GENE    12      9391  -     10056    667    221 aa, chain - ## HITS:1  COG:yhhQ KEGG:ns NR:ns ## COG: yhhQ COG1738 # Protein_GI_number: 16131343 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     221       1     221     221     374  100.0  1e-104
MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTV
RIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYA
LGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIAL
VDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINALQAS
>gi|223713508|gb|ACDM01000090.1| GENE    13     10277  -     10522    355     81 aa, chain + ## HITS:1  COG:ECs4319 KEGG:ns NR:ns ## COG: ECs4319 COG0425 # Protein_GI_number: 15833573 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1      81       1      81      81     159  100.0  1e-39
MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFME
HELVAKETDGLPYRYLIRKGG
>gi|223713508|gb|ACDM01000090.1| GENE    14     10624  -     12822   2453    732 aa, chain - ## HITS:1  COG:zntA KEGG:ns NR:ns ## COG: zntA COG2217 # Protein_GI_number: 16131341 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli K12 # 1     732       1     732     732    1262   99.0  0
MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSTPTLSENVSGTRYSWKVSGMDCA
ACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQAAEEP
QASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATTLVGLYPIARQALRLIKSGSY
FAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGWAASRARQGVSALMALKPETAT
RLRKGEREEVAINSLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGD
KVPAGATSVDRLVTLEVLSEPGASAIDRILKLIEEAEERRAPIERFIDRFSRIYTPAIMA
VALLVTLVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKG
GAALEQLGRVTQVAFDKTGTLTVGKPRVTAIHPATGISESELLTLAAAVEQGATHPLAQA
IVREAQVAELAIPTAESQRALVGSGIEAQVNGERVLICAAGKHPADAFTGLINELESAGQ
TVVLVVRNDDVLGVIALQDTLRADAATAISELNALGVKGVILTGDNPRAAAAIAGELGLE
FKAGLLPEDKVKAVTGLNQHAPLAMVGDGINDAPAMKAAAIGIAMGSGTDVALETADAAL
THNHLRGLVQMIELARATHANIRQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVL
VTANALRLLRRR
>gi|223713508|gb|ACDM01000090.1| GENE    15     12896  -     13522    725    208 aa, chain - ## HITS:1  COG:STM3575 KEGG:ns NR:ns ## COG: STM3575 COG3714 # Protein_GI_number: 16766861 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1     208       1     208     208     302   91.0  3e-82
MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQAPMFDAISYLVLAGLC
ASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSFFWPLPLVLLVLGALLLAI
IWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALSAFVGASLLFISNFVWLGSHY
RRRFRADNAIAAACYFAGHFLIVRSLYL
>gi|223713508|gb|ACDM01000090.1| GENE    16     13663  -     14022    373    119 aa, chain + ## HITS:1  COG:no KEGG:JW3432 NR:ns ## KEGG: JW3432 # Name: yhhM # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     119       1     119     119     218  100.0  5e-56
MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQ
QEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ
>gi|223713508|gb|ACDM01000090.1| GENE    17     14025  -     14294    351     89 aa, chain - ## HITS:1  COG:yhhL KEGG:ns NR:ns ## COG: yhhL COG3776 # Protein_GI_number: 16131338 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1      89       1      89      89     149  100.0  1e-36
MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMHGMQLALLKSTLPKDGP
QMTTAEKVRIFLFGVFELLAWQKKFKVKK
>gi|223713508|gb|ACDM01000090.1| GENE    18     14284  -     14880    190    198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 12     194      13     199     199 77  27 3e-13
MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCF
AGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP
HNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAG
QVAYRLYQREAQGESDAD
>gi|223713508|gb|ACDM01000090.1| GENE    19     15030  -     16523    747    497 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 198     494      21     321     336 292  48 7e-78
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHT
EAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNA
EAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPV
EEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADV
GVETTRKIITNLTEGASRKQLRDAEALYGQLKEEMGEILAKVDEPLNVEGKAPFVILMVG
VNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS
ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID
ASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDL
RPFKADDFIEALFARED
>gi|223713508|gb|ACDM01000090.1| GENE    20     16526  -     17194    348    222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1     216       4     220     223 138  36 1e-31
MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW
FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA
ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF
EEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGGVGHE
>gi|223713508|gb|ACDM01000090.1| GENE    21     17187  -     18245   1044    352 aa, chain + ## HITS:1  COG:ftsX KEGG:ns NR:ns ## COG: ftsX COG2177 # Protein_GI_number: 16131334 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli K12 # 1     352       1     352     352     687  100.0  0
MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKPVNRKTNVFNEQVRYAF
HGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAATQYYPSPQITVYLQKTLD
DDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGGALDMLEENPLPAVAVVIPKL
DFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALTGLVGRVSAMIGVLMVAAVFLVI
GNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGGALLGFSGALLSLILSEILVLRLSS
AVAEVAQVFGTKFDINGLSFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPE
>gi|223713508|gb|ACDM01000090.1| GENE    22     18490  -     19344   1067    284 aa, chain + ## HITS:1  COG:ECs4310 KEGG:ns NR:ns ## COG: ECs4310 COG0568 # Protein_GI_number: 15833564 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1     284       1     284     284     514  100.0  1e-146
MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRF
VVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDM
TFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDII
RARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>gi|223713508|gb|ACDM01000090.1| GENE    23     19615  -     20718   1404    367 aa, chain + ## HITS:1  COG:ECs4309 KEGG:ns NR:ns ## COG: ECs4309 COG0683 # Protein_GI_number: 15833563 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli O157:H7 # 1     367      20     386     386     706  100.0  0
MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKG
GIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI
TPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARA
VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAG
LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFV
WTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHAN
GTATDAK
>gi|223713508|gb|ACDM01000090.1| GENE    24     20906  -     21289    317    127 aa, chain - ## HITS:1  COG:no KEGG:JW3424 NR:ns ## KEGG: JW3424 # Name: yhhK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     127       1     127     127     253  100.0  1e-66
MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTE
GALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQ
QGGWEKC
>gi|223713508|gb|ACDM01000090.1| GENE    25     21713  -     22822   1278    369 aa, chain + ## HITS:1  COG:livK KEGG:ns NR:ns ## COG: livK COG0683 # Protein_GI_number: 16131330 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli K12 # 1     369       1     369     369     707  100.0  0
MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG
GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI
SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS
VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG
LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV
WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH
ADGSSTAAK
>gi|223713508|gb|ACDM01000090.1| GENE    26     22870  -     23796   1358    308 aa, chain + ## HITS:1  COG:ECs4304 KEGG:ns NR:ns ## COG: ECs4304 COG0559 # Protein_GI_number: 15833558 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Escherichia coli O157:H7 # 1     308       1     308     308     491  100.0  1e-138
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAA
LMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQN
YVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRM
GRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGM
KAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGIL
GRPEVEKV
>gi|223713508|gb|ACDM01000090.1| GENE    27     23793  -     25070   1519    425 aa, chain + ## HITS:1  COG:livM KEGG:ns NR:ns ## COG: livM COG4177 # Protein_GI_number: 16131328 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Escherichia coli K12 # 1     425       1     425     425     717   99.0  0
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQL
LRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMI
YIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGF
LLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAR
EGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIA
CRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVFGGMG
SQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAA
KGEQA
>gi|223713508|gb|ACDM01000090.1| GENE    28     25067  -     25834    258    255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5     245       1     230     245 103  25 3e-21
MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG
TILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT
PSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEP
AAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ
IRNNPDVIRAYLGEA
>gi|223713508|gb|ACDM01000090.1| GENE    29     25836  -     26549    267    237 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5     216       1     218     245 107  29 3e-22
MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG
RIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV
YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTI
EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG
>gi|223713508|gb|ACDM01000090.1| GENE    30     26948  -     28264   1719    438 aa, chain + ## HITS:1  COG:ECs4299 KEGG:ns NR:ns ## COG: ECs4299 COG1653 # Protein_GI_number: 15833553 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1     438       1     438     438     845  100.0  0
MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPT
YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQF
VPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLK
ASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM
NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAP
QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQ
GFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDT
AVERGNQLLRRFEKSTKS
>gi|223713508|gb|ACDM01000090.1| GENE    31     28362  -     29249   1082    295 aa, chain + ## HITS:1  COG:ugpA KEGG:ns NR:ns ## COG: ugpA COG1175 # Protein_GI_number: 16131324 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1     295       1     295     295     485  100.0  1e-137
MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFV
TLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPA
VAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAA
LQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSG
GPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ
>gi|223713508|gb|ACDM01000090.1| GENE    32     29246  -     30091    940    281 aa, chain + ## HITS:1  COG:ECs4297 KEGG:ns NR:ns ## COG: ECs4297 COG0395 # Protein_GI_number: 15833551 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Escherichia coli O157:H7 # 1     281       1     281     281     482   99.0  1e-136
MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN
IWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFIT
LMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARID
GASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIAT
GEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK
>gi|223713508|gb|ACDM01000090.1| GENE    33     30093  -     31163   1486    356 aa, chain + ## HITS:1  COG:ugpC KEGG:ns NR:ns ## COG: ugpC COG3839 # Protein_GI_number: 16131322 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli K12 # 1     356      14     369     369     697  100.0  0
MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGD
IWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKEAAR
ILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQL
HRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGSPAM
NLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKMTLGIRPEHIALSSQAEGGVPMVMD
TLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLAENQLHLFDGETGQRV
>gi|223713508|gb|ACDM01000090.1| GENE    34     31160  -     31903    754    247 aa, chain + ## HITS:1  COG:ugpQ KEGG:ns NR:ns ## COG: ugpQ COG0584 # Protein_GI_number: 16131321 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 1     247       1     247     247     505   99.0  1e-143
MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLER
TSNGWGVAGELNWQDLLRVDAGSWYSKMFKGEPLPLLSQVAERCREHGMMANIEIKPTTG
TGPLTGKMVALAARELWAGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELT
ARLGCVSIHLNHKLLNKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI
GPNFTAQ
>gi|223713508|gb|ACDM01000090.1| GENE    35     31890  -     32330    312    146 aa, chain - ## HITS:1  COG:no KEGG:S4297 NR:ns ## KEGG: S4297 # Name: yhhA # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1     146       1     146     146     157  100.0  1e-37
MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT
QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML
PERRNGDMLNQPSTPQPDIPLKTIGP
>gi|223713508|gb|ACDM01000090.1| GENE    36     32450  -     34192   1782    580 aa, chain + ## HITS:1  COG:ggt KEGG:ns NR:ns ## COG: ggt COG0405 # Protein_GI_number: 16131319 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Escherichia coli K12 # 1     580       1     580     580    1100  100.0  0
MIKPTFLRRVAIAALLSGSCFSAAAAPPAPPVSYGVEEDVFHPVRAKQGMVASVDATATQ
VGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAK
ATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDG
FIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPD
EFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHI
VQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYA
KSIADQIDINKAKPSSEIRPGKLAPYESNQTTHYSVVDKDGNAVAVTYTLNTTFGTGIVA
GESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTG
SPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAK
GQKVALKEAMGSTQSIMVGPDGELYGASDPRSVDDLTAGY
>gi|223713508|gb|ACDM01000090.1| GENE    37     34230  -     34514    263     94 aa, chain - ## HITS:1  COG:no KEGG:B21_03248 NR:ns ## KEGG: B21_03248 # Name: yrhB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      94       1      94      94     189  100.0  2e-47
MITYHDAFAKANHYLDDADLPVVITLHGRFSQGWYFCFEAREFLETGDEAARLAGNAPFI
IDKDSGEIHSLGTAKPLEEYLQDYEIKKATFGLP
>gi|223713508|gb|ACDM01000090.1| GENE    38     34714  -     34869     60     51 aa, chain - ## HITS:1  COG:no KEGG:EC55989_3853 NR:ns ## KEGG: EC55989_3853 # Name: yrhD # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1      51       4      54      54      89  100.0  4e-17
MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDMLIYLEFYPNHKILIS
>gi|223713508|gb|ACDM01000090.1| GENE    39     34964  -     35419    218    151 aa, chain - ## HITS:1  COG:no KEGG:ECIAI1_3588 NR:ns ## KEGG: ECIAI1_3588 # Name: yrhA # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1     151      14     164     164     241   99.0  8e-63
MNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQPDYLTFLRAMDGF
EVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYSISIFTYDIKSNF
FEIRDNIGTENIFSSFSDFSSFLNEIMDSCS
>gi|223713508|gb|ACDM01000090.1| GENE    40     35455  -     36633    263    392 aa, chain - ## HITS:1  COG:yhhZ_1 KEGG:ns NR:ns ## COG: yhhZ_1 COG3157 # Protein_GI_number: 16131314 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli K12 # 1     170       1     170     170     337  100.0  3e-92
MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSLLNNINNTGLGSQFHGI
TFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYYYIQLRGAFLSAIHHQIIE
NQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFLPNSKNQTNNRFKTLNSKAIG
RLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEKTAGIAIATASILLTKRSNVDTY
TEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLANLRKEFNKTVRKNFLIKLAKTSEA
SGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGTNDFENLVLIENEPYHKVFTNMQSRIA
KGILVGESKITPWAIPSGSIYPPMKNIMDHTK
>gi|223713508|gb|ACDM01000090.1| GENE    41     36870  -     37358    347    162 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase [Sphaerobacter thermophilus DSM 20745] # 1     162       1     163     179 138  46 2e-31
MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQERLADRPGIKQLVACIDG
DVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTV
FVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARVK
>gi|223713508|gb|ACDM01000090.1| GENE    42     37592  -     37789    162     65 aa, chain - ## HITS:1  COG:no KEGG:ECS88_3838 NR:ns ## KEGG: ECS88_3838 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1      62      20      81      86     123   98.0  2e-27
MRDMPAILAVKYIRQMVTGGAFAEANKGAVDDHDFVLFKVVIYTLAQSGRGSYWSAHNEH
KHSRG
>gi|223713508|gb|ACDM01000090.1| GENE    43     37691  -     38728   1091    345 aa, chain + ## HITS:1  COG:yhhX KEGG:ns NR:ns ## COG: yhhX COG0673 # Protein_GI_number: 16131312 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1     345       1     345     345     702  100.0  0
MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEV
LNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT
PYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVAETKPGLPQDGAFYGLGVHTM
DQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHLVKIDYPKFIVHG
KKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGR
VYDALYQTITHGAPNYVKESEVLTNLEILERGFEQASPSTVTLAK
>gi|223713508|gb|ACDM01000090.1| GENE    44     38851  -     39546    896    231 aa, chain + ## HITS:1  COG:yhhW KEGG:ns NR:ns ## COG: yhhW COG1741 # Protein_GI_number: 16131311 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1     231       1     231     231     471  100.0  1e-133
MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHK
DMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM
PEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDMELYRWALLKDEQSVHQIAAE
RRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHADSDSEVLLFDLPPV
>gi|223713508|gb|ACDM01000090.1| GENE    45     39770  -     40765    964    331 aa, chain + ## HITS:1  COG:ECs4287 KEGG:ns NR:ns ## COG: ECs4287 COG1609 # Protein_GI_number: 15833541 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     331       1     331     331     652   99.0  0
MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSN
ATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNI
DGLILTERTHTPRTLKMIEVAGIPVVELMDSKSPCLDIAVGFDNFEAARQMTTAIIARGH
RHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSSGIELIRQARREYPQL
DGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSI
GAERLLARIRGESVTPKMLDLGFTLSPGGSI
>gi|223713508|gb|ACDM01000090.1| GENE    46     40943  -     41431    484    162 aa, chain + ## HITS:1  COG:ECs4286 KEGG:ns NR:ns ## COG: ECs4286 COG3265 # Protein_GI_number: 15833540 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconate kinase # Organism: Escherichia coli O157:H7 # 1     162       1     162     162     325  100.0  3e-89
MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAA
FAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQM
LVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK
>gi|223713508|gb|ACDM01000090.1| GENE    47     41498  -     42775   1571    425 aa, chain + ## HITS:1  COG:STM3541 KEGG:ns NR:ns ## COG: STM3541 COG2610 # Protein_GI_number: 16766827 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 1     425      22     446     446     674   97.0  0
MKARMHAFLALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHE
TGAVDQIAVKMLKSFGHSRAHYAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLV
KLVIPLFAGVAAAAAFLVPGPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFI
SRYVELHIPDDISEPHLGEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFE
FIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLV
DSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGA
QMAALSICIAGGSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIA
FQLLS
>gi|223713508|gb|ACDM01000090.1| GENE    48     42832  -     43425    624    197 aa, chain - ## HITS:1  COG:ECs4279 KEGG:ns NR:ns ## COG: ECs4279 COG2095 # Protein_GI_number: 15833533 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli O157:H7 # 1     197       1     197     197     294  100.0  9e-80
MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVRELLIALLVMLVFLFAGEK
ILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTI
LATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFLRLLGEKGVNALERLMGLILV
MMATQMFLDGIRMWMKG
>gi|223713508|gb|ACDM01000090.1| GENE    49     43618  -     44721   1146    367 aa, chain + ## HITS:1  COG:ECs4278 KEGG:ns NR:ns ## COG: ECs4278 COG0136 # Protein_GI_number: 15833532 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Escherichia coli O157:H7 # 1     367       1     367     367     746  100.0  0
MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDL
EALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT
DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMG
HLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR
EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNP
WAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR
RMLRQLA
>gi|223713508|gb|ACDM01000090.1| GENE    50     44994  -     47180   2638    728 aa, chain + ## HITS:1  COG:glgB KEGG:ns NR:ns ## COG: glgB COG0296 # Protein_GI_number: 16131306 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Escherichia coli K12 # 1     728       1     728     728    1507  100.0  0
MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDATDVWVIEPKTGRKLAKL
ECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLR
PYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIP
GAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFD
APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGY
QPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS
DPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG
EWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK
WNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMP
GDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQ
RLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV
PRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLAT
IWLVREAE
>gi|223713508|gb|ACDM01000090.1| GENE    51     47177  -     49150   1409    657 aa, chain + ## HITS:1  COG:glgX KEGG:ns NR:ns ## COG: glgX COG1523 # Protein_GI_number: 16131305 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Escherichia coli K12 # 1     657       1     657     657    1382  100.0  0
MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRYDLPGHSGDIWHGY
LPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYR
DNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALG
HPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETA
LDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWT
GCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNC
PVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAA
SSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKE
GLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDW
SQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQ
ILLSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR
>gi|223713508|gb|ACDM01000090.1| GENE    52     49168  -     50463   1240    431 aa, chain + ## HITS:1  COG:ECs4275 KEGG:ns NR:ns ## COG: ECs4275 COG0448 # Protein_GI_number: 15833529 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1     431       1     431     431     909  100.0  0
MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSN
CINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLLPAQQRMKGENWYRGTADA
VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGV
MAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVFDADYLYELLEEDDRDENSSHDF
GKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLASVVPELDMY
DRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLVSGGCVISGSVVVQSVLFSRVRVNSFC
NIDSAVLLPEVWVGRSCRLRRCVIDRACVIPEGMVIGENAEEDARRFYRSEEGIVLVTRE
MLRKLGHKQER
>gi|223713508|gb|ACDM01000090.1| GENE    53     50463  -     51896   1336    477 aa, chain + ## HITS:1  COG:ECs4274 KEGG:ns NR:ns ## COG: ECs4274 COG0297 # Protein_GI_number: 15833528 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Escherichia coli O157:H7 # 1     477       1     477     477     974   99.0  0
MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVIDAQVVSRR
DTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEM
ASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLP
WSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGR
LSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSR
LTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFS
HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASG
FVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK
>gi|223713508|gb|ACDM01000090.1| GENE    54     51915  -     54362   2886    815 aa, chain + ## HITS:1  COG:glgP KEGG:ns NR:ns ## COG: glgP COG0058 # Protein_GI_number: 16131302 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Escherichia coli K12 # 1     815       1     815     815    1660  100.0  0
MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRS
NRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPG
LGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWE
FKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASS
EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSR
HYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHT
LMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR
VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPS
LSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVN
PKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKH
IIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSN
MKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEEL
HQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEW
TAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL
>gi|223713508|gb|ACDM01000090.1| GENE    55     54491  -     54772    164     93 aa, chain + ## HITS:1  COG:ECs4272 KEGG:ns NR:ns ## COG: ECs4272 COG0226 # Protein_GI_number: 15833526 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1      73       5      77     505     129   84.0  1e-30
MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML
ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP
>gi|223713508|gb|ACDM01000090.1| GENE    56     54978  -     56483   1714    501 aa, chain - ## HITS:1  COG:glpD KEGG:ns NR:ns ## COG: glpD COG0578 # Protein_GI_number: 16131300 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1     501       1     501     501     991  100.0  0
METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYE
FRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGS
TGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENG
LWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVH
TQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHF
KKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRK
LAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYART
YGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNAD
QQSRVSQWLVEYTQQRLSLAS
>gi|223713508|gb|ACDM01000090.1| GENE    57     56673  -     56999    512    108 aa, chain + ## HITS:1  COG:glpE KEGG:ns NR:ns ## COG: glpE COG0607 # Protein_GI_number: 16131299 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1     108       1     108     108     212  100.0  2e-55
MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTP
VMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEVAYGA
>gi|223713508|gb|ACDM01000090.1| GENE    58     57044  -     57874    837    276 aa, chain + ## HITS:1  COG:glpG KEGG:ns NR:ns ## COG: glpG COG0705 # Protein_GI_number: 16131298 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Escherichia coli K12 # 1     276       1     276     276     518   99.0  1e-147
MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPA
DPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVMMIACVVVFIAMQILGDQEVM
LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLI
SALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAG
WFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
>gi|223713508|gb|ACDM01000090.1| GENE    59     57891  -     58649    831    252 aa, chain + ## HITS:1  COG:glpR KEGG:ns NR:ns ## COG: glpR COG1349 # Protein_GI_number: 16131297 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1     252       1     252     252     491  100.0  1e-139
MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHGGAALPS
SSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTTPEAVAHALLNHSNLRIVT
NNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGS
LLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDAPPPVSVMQ
VLTDHHIQLELC
>gi|223713508|gb|ACDM01000090.1| GENE    60     58631  -     60229   1274    532 aa, chain - ## HITS:1  COG:rtcR KEGG:ns NR:ns ## COG: rtcR COG4650 # Protein_GI_number: 16131296 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1     532       1     532     532    1051   99.0  0
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI
CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
>gi|223713508|gb|ACDM01000090.1| GENE    61     60418  -     61644   1317    408 aa, chain + ## HITS:1  COG:rtcB KEGG:ns NR:ns ## COG: rtcB COG1690 # Protein_GI_number: 16131295 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     408       1     408     408     848   99.0  0
MNYELLTTENAPVKMWTKGVLVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
>gi|223713508|gb|ACDM01000090.1| GENE    62     61648  -     62664    788    338 aa, chain + ## HITS:1  COG:yhgK+J KEGG:ns NR:ns ## COG: yhgK+J COG0430 # Protein_GI_number: 16132255 # Func_class: A RNA processing and modification # Function: RNA 3'-terminal phosphate cyclase # Organism: Escherichia coli K12 # 1     338       2     339     339     628   99.0  1e-180
MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATE
ICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEV
SGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFNTL
QLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRDQGPGNTVSLEV
ESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAGAGEF
TVAHPSCHLLTNIAVVERFLPVRFSLIETDGVTRVSIE
>gi|223713508|gb|ACDM01000090.1| GENE    63     62707  -     65412   2527    901 aa, chain - ## HITS:1  COG:malT KEGG:ns NR:ns ## COG: malT COG2909 # Protein_GI_number: 16131294 # Func_class: K Transcription # Function: ATP-dependent transcriptional regulator # Organism: Escherichia coli K12 # 1     901       1     901     901    1677  100.0  0
MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG
WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH
SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG
SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA
RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE
IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA
IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ
SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP
PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA
QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL
SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW
QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS
LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ
LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE
WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG
V
>gi|223713508|gb|ACDM01000090.1| GENE    64     66024  -     68417   2783    797 aa, chain + ## HITS:1  COG:ECs4259 KEGG:ns NR:ns ## COG: ECs4259 COG0058 # Protein_GI_number: 15833513 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Escherichia coli O157:H7 # 1     797       1     797     797    1644   99.0  0
MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQR
HVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA
ACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQV
GIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFL
RAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELAD
YEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKL
VKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNG
VAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWAND
LDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYK
RQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDP
LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG
ANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGD
KHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFS
SDRSIRDYQARIWQAKR
>gi|223713508|gb|ACDM01000090.1| GENE    65     68427  -     70511   2030    694 aa, chain + ## HITS:1  COG:malQ KEGG:ns NR:ns ## COG: malQ COG1640 # Protein_GI_number: 16131292 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Escherichia coli K12 # 1     684       1     684     694    1413   99.0  0
MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQRTATKVAVTPVPNVMVY
TSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPTKLPEGYHTLTLTQDDQRA
HCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWGIGDFGDLKAMLVDVAKRGGS
FIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFHLSEEAQAWWQLPTTQQT
LQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDEQMAAFRQFVAEQGDSLFWQAAFDA
LHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFCEEHRDDVDFYLWLQWLAYSQFAACWE
ISQGYEMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMDP
HIITARAYEPFIELLRANMQNCGALRIDHVMSMLRLWWIPYGETADQGAYVHYPVDDLLS
ILALESKRHRCMVIGEDLGTVPVEIVGKLRSSGVYSYKVLYFENDHEKTFRAPKAYPEQS
MAVAATHDLPTLRGYWESGDLTLGKTLGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCL
PKRAGHKASLMSMTPTLNRGLQRYIADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWR
RKLSATLESMFADDGVNKLLKDLDRRRRAAAKKK
>gi|223713508|gb|ACDM01000090.1| GENE    66     70622  -     71938   1806    438 aa, chain - ## HITS:1  COG:ECs4257 KEGG:ns NR:ns ## COG: ECs4257 COG2610 # Protein_GI_number: 15833511 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli O157:H7 # 1     438       1     438     438     700  100.0  0
MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGS
LALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVL
MLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTI
LAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRA
IAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIA
MMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLRIALGSATVAAIT
AGGIAAPLIATTGVSPELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLE
TIISVCGLVGCLLLNMVI
>gi|223713508|gb|ACDM01000090.1| GENE    67     72298  -     72873    708    191 aa, chain - ## HITS:1  COG:yhgI_2 KEGG:ns NR:ns ## COG: yhgI_2 COG0694 # Protein_GI_number: 16131290 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Escherichia coli K12 # 97     191       1      95      95     197  100.0  8e-51
MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDL
LTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN
PQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRDL
TEHQRGEHSYY
>gi|223713508|gb|ACDM01000090.1| GENE    68     72932  -     73615    241    227 aa, chain - ## HITS:1  COG:yhgH KEGG:ns NR:ns ## COG: yhgH COG1040 # Protein_GI_number: 16131289 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Escherichia coli K12 # 1     227      17     243     243     404  100.0  1e-113
MLTVPGLCWLCRMPLALGHWGICSVCSRATRTDKTLCPQCGLPATHSHLPCGRCLQKPPP
WQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVLHARRTTGLQLPDRIVSVP
LWQRRHWRRGFNQSDLLCQPLSRWLHCQWDSEAVTRTRATATQHFLSARLRKRNLKNAFR
LELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAAAVQVWCLCRTL
>gi|223713508|gb|ACDM01000090.1| GENE    69     73653  -     74423    559    256 aa, chain + ## HITS:1  COG:bioH KEGG:ns NR:ns ## COG: bioH COG0596 # Protein_GI_number: 16131288 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1     256       1     256     256     518  100.0  1e-147
MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALS
LADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGI
KPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGL
EILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFIS
HPAEFCHLLVALKQRV
>gi|223713508|gb|ACDM01000090.1| GENE    70     74452  -     75330    740    292 aa, chain - ## HITS:1  COG:yhgA KEGG:ns NR:ns ## COG: yhgA COG5464 # Protein_GI_number: 16131287 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     292       1     292     292     586  100.0  1e-167
MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRES
YSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPL
LFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVTVMPDDEIMQHRRMALLELIQ
KHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHK
ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIMRFTGLSEEELAAASQ
>gi|223713508|gb|ACDM01000090.1| GENE    71     75533  -     75769    231     78 aa, chain - ## HITS:1  COG:no KEGG:SDY_3666 NR:ns ## KEGG: SDY_3666 # Name: yhgG # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1      78       1      78      78     136  100.0  3e-31
MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGS
CKSCPEGKACLREWWALR
>gi|223713508|gb|ACDM01000090.1| GENE    72     75769  -     78090   2856    773 aa, chain - ## HITS:1  COG:feoB KEGG:ns NR:ns ## COG: feoB COG0370 # Protein_GI_number: 16131285 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Escherichia coli K12 # 1     773       1     773     773    1503  100.0  0
MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT
YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALN
MLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQP
LLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDP
ALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDKIVLNRFLGLPIFLFVMYLMFLLAI
NIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDWLTIFLAQGLGGGINTVLPLVPQIGMM
YLFLSFLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRER
LMTIMMAPFMSCGARLAIFAVFAAAFFGQNGALAVFSLYMLGIVMAVLTGLMLKYTIMRG
EATPFVMELPVYHVPHVKSLIIQTWQRLKGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVD
NINDSALASVSRVITPVFKPIGVHEDNWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDE
EFNPAEFNLGEELFSAIDETWQSLKDTFSLSVLMNPIEASKGDGEMGTGAMGVMDQKFGS
AAAAYSYLIFVLLYVPCISVMGAIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQH
PTYSLVCILAVILFNIVVIGLLRRARSRVDIELLATRKSVSSCCAASTTGDCH
>gi|223713508|gb|ACDM01000090.1| GENE    73     78107  -     78334    237     75 aa, chain - ## HITS:1  COG:ECs4250 KEGG:ns NR:ns ## COG: ECs4250 COG1918 # Protein_GI_number: 15833504 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Escherichia coli O157:H7 # 1      75       1      75      75     147  100.0  6e-36
MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVL
RKKDLALLEVEAVSC
>gi|223713508|gb|ACDM01000090.1| GENE    74     78791  -     81112   1644    773 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM 14863] # 1     743       1     743     764 637  48 0.0
MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL
SYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIE
AGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALDGARYILMERFAEDAALLAKV
RDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPH
TGQAAKAAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGA
SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS
RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRNL
KASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTN
VTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETNARRGGGNERPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR
>gi|223713508|gb|ACDM01000090.1| GENE    75     81209  -     81685    679    158 aa, chain - ## HITS:1  COG:ECs4248 KEGG:ns NR:ns ## COG: ECs4248 COG0782 # Protein_GI_number: 15833502 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1     158      13     170     170     305   99.0  3e-83
MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR
RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISI
DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP
>gi|223713508|gb|ACDM01000090.1| GENE    76     81913  -     82632    897    239 aa, chain + ## HITS:1  COG:ECs4247 KEGG:ns NR:ns ## COG: ECs4247 COG0745 # Protein_GI_number: 15833501 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     239       1     239     239     447  100.0  1e-126
MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG
EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL
RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL
SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>gi|223713508|gb|ACDM01000090.1| GENE    77     82629  -     83981   1336    450 aa, chain + ## HITS:1  COG:envZ KEGG:ns NR:ns ## COG: envZ COG0642 # Protein_GI_number: 16131281 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     450       1     450     450     899  100.0  0
MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQQFNKVLAYEVRMLMTD
KLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWAQHYEFLSHQMAQQLGGPT
EVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPLFRYTLAIMLLAIGGAWLFIR
IQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAG
VSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMAD
LNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYGNGWIKVSS
GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGML
ELGTSERGGLSIRAWLPVPVTRAQGTTKEG
>gi|223713508|gb|ACDM01000090.1| GENE    78     84057  -     85679   2004    540 aa, chain - ## HITS:1  COG:pckA KEGG:ns NR:ns ## COG: pckA COG1866 # Protein_GI_number: 16131280 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Escherichia coli K12 # 1     540       1     540     540    1119  100.0  0
MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTG
IFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFV
VDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQW
KEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEK
GDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEI
YNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFL
TADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQ
YAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNL
AIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL
>gi|223713508|gb|ACDM01000090.1| GENE    79     86058  -     87782   1446    574 aa, chain + ## HITS:1  COG:no KEGG:B21_03206 NR:ns ## KEGG: B21_03206 # Name: yhgE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     574       1     574     574     983   99.0  0
MDNVELSPATRWGMIATGLLQGLVCYLLIAWLSGKNHSWIVYGVPATVAFSSVLLFSVIS
FKQKRLWGWLALVFIATLGMSGWLKWQTDGMNPWRAEKALWDFGCYLLLMAMLLLPWIQQ
SLRIRNDSSRYRYFYQSVWHNVLILLVIFLANGLTWLVLLLWSELFKLVGITFFNTLFFA
TDWFIYLTLGLVTALAVILARTQSRLIDSIQKLFTLIATGLLPLVSLLTLMFIITLPFTG
LSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASLPWTGPLRCLIKTALLVAPLYVFVA
AWALWLRVAQYGWTVDRLQGVLAVLVLLVWSLGYFVSIVWRKGQNPVVLQGKVNLAVSLL
VLVILVLLNSPVLDSMRISVNSHMARYQSGKNTSDQVTIYMLEQSGRYGRAALESLKSDA
GFMKDPKRARDLLMALDGEQHLQQQVSEKVLADNVLIAPGSVKPDATFWSALIQDRYNVM
TCIEKDACVLVEQDLNSDGQAERILFAFNDDRVIVYGFDSDRKEWDALDMSLLPNEITKE
KLLTAAKDGKLGTKPKAWRDLVVDGERLNVNLNE
>gi|223713508|gb|ACDM01000090.1| GENE    80     87845  -     88723   1086    292 aa, chain - ## HITS:1  COG:ZyrfI KEGG:ns NR:ns ## COG: ZyrfI COG1281 # Protein_GI_number: 15803904 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Escherichia coli O157:H7 EDL933 # 1     292       3     294     294     585  100.0  1e-167
MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVLAELLVATSLLTATLK
FDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITITPS
EGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA
QQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADA
LKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH
>gi|223713508|gb|ACDM01000090.1| GENE    81     88748  -     89149    448    133 aa, chain - ## HITS:1  COG:ECs4242 KEGG:ns NR:ns ## COG: ECs4242 COG1188 # Protein_GI_number: 15833496 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Escherichia coli O157:H7 # 1     133       1     133     133     214  100.0  3e-56
MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG
NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE
RRDLLRFKHGDSE
>gi|223713508|gb|ACDM01000090.1| GENE    82     89160  -     89828    938    222 aa, chain - ## HITS:1  COG:ECs4241 KEGG:ns NR:ns ## COG: ECs4241 COG1011 # Protein_GI_number: 15833495 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1     222      16     237     237     459  100.0  1e-129
MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHD
VQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHP
HNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILD
AAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM
>gi|223713508|gb|ACDM01000090.1| GENE    83     89893  -     92028   1763    711 aa, chain - ## HITS:1  COG:no KEGG:JW3361 NR:ns ## KEGG: JW3361 # Name: yrfF # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     711       1     711     711    1363  100.0  0
MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESL
TQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLP
PFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESE
QIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA
GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQ
DLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPL
DMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPF
LPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLR
PVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYD
YPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTL
LLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLIE
>gi|223713508|gb|ACDM01000090.1| GENE    84     92348  -     92908    659    186 aa, chain + ## HITS:1  COG:yrfE KEGG:ns NR:ns ## COG: yrfE COG0494 # Protein_GI_number: 16131274 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1     186       1     186     186     360  100.0  1e-99
MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHL
ILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF
SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWL
KGQGRV
>gi|223713508|gb|ACDM01000090.1| GENE    85     93074  -     95626   2635    850 aa, chain - ## HITS:1  COG:mrcA KEGG:ns NR:ns ## COG: mrcA COG5009 # Protein_GI_number: 16131273 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Escherichia coli K12 # 1     850       9     858     858    1710   99.0  0
MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQ
YGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAST
ITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAA
QVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQF
DQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQ
QAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQ
QATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLA
QVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGL
TLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDY
AAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQG
GVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQA
LVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTT
NSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAY
MKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTI
IDNGEAQELF
>gi|223713508|gb|ACDM01000090.1| GENE    86     95746  -     96525    700    259 aa, chain + ## HITS:1  COG:no KEGG:JW5693 NR:ns ## KEGG: JW5693 # Name: yrfD # Def: predicted pilus assembly protein # Organism: E.coli_J # Pathway: not_defined # 1     259       1     259     259     493  100.0  1e-138
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
RDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKAY
>gi|223713508|gb|ACDM01000090.1| GENE    87     96525  -     97064    288    179 aa, chain + ## HITS:1  COG:yrfC KEGG:ns NR:ns ## COG: yrfC COG3166 # Protein_GI_number: 16131271 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilN # Organism: Escherichia coli K12 # 1     179       1     179     179     253  100.0  1e-67
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTGSAEARIDAVLLQAEQQ
LARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQG
TLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL
>gi|223713508|gb|ACDM01000090.1| GENE    88     97048  -     97488    191    146 aa, chain + ## HITS:1  COG:no KEGG:ECO103_4111 NR:ns ## KEGG: ECO103_4111 # Name: hofO # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     146       1     146     146     266  100.0  2e-70
MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYR
LVDTTPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNV
SVSRFSLSVEGDDLLFTLQLETPHEG
>gi|223713508|gb|ACDM01000090.1| GENE    89     97478  -     97882    276    134 aa, chain + ## HITS:1  COG:no KEGG:SDY_3687 NR:ns ## KEGG: SDY_3687 # Name: yrfA # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1     134      14     147     147     253  100.0  1e-66
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK
WRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTR
RTGGKAAKSDADGG
>gi|223713508|gb|ACDM01000090.1| GENE    90     97794  -     99032   1085    412 aa, chain + ## HITS:1  COG:hofQ KEGG:ns NR:ns ## COG: hofQ COG4796 # Protein_GI_number: 16131268 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component HofQ # Organism: Escherichia coli K12 # 1     412       1     412     412     738  100.0  0
MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL
HLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENR
SITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQ
VELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEA
VLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLAL
GGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE
>gi|223713508|gb|ACDM01000090.1| GENE    91     99433  -     99954    542    173 aa, chain + ## HITS:1  COG:ECs4232 KEGG:ns NR:ns ## COG: ECs4232 COG0703 # Protein_GI_number: 15833486 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Escherichia coli O157:H7 # 1     173      68     240     240     321  100.0  4e-88
MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFR
DREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKR
PLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN
>gi|223713508|gb|ACDM01000090.1| GENE    92    100011  -    101099    920    362 aa, chain + ## HITS:1  COG:aroB KEGG:ns NR:ns ## COG: aroB COG0337 # Protein_GI_number: 16131267 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Escherichia coli K12 # 1     362       1     362     362     694  100.0  0
MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQA
GVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQR
GVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELAS
GLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGLR
ALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLKRA
GLPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIADCQ
SA
>gi|223713508|gb|ACDM01000090.1| GENE    93    101191  -    102477   1069    428 aa, chain + ## HITS:1  COG:damX KEGG:ns NR:ns ## COG: damX COG3266 # Protein_GI_number: 16131266 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     428       1     428     428     484  100.0  1e-137
MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKE
RNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQYMMMGVGILVLLLLIIGI
GSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTP
TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR
DTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAA
TSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDN
LNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL
RQVQADLK
>gi|223713508|gb|ACDM01000090.1| GENE    94    102584  -    103420    633    278 aa, chain + ## HITS:1  COG:ECs4229 KEGG:ns NR:ns ## COG: ECs4229 COG0338 # Protein_GI_number: 15833483 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Escherichia coli O157:H7 # 1     278       1     278     278     564  100.0  1e-161
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLI
SLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYN
GLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYC
DPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRA
KLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
>gi|223713508|gb|ACDM01000090.1| GENE    95    103438  -    104115    800    225 aa, chain + ## HITS:1  COG:ECs4228 KEGG:ns NR:ns ## COG: ECs4228 COG0036 # Protein_GI_number: 15833482 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Escherichia coli O157:H7 # 1     225       1     225     225     441  100.0  1e-124
MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYG
ITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCKAGLVFNPA
TPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGV
KVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSELAKVSHE
>gi|223713508|gb|ACDM01000090.1| GENE    96    104108  -    104866    945    252 aa, chain + ## HITS:1  COG:gph KEGG:ns NR:ns ## COG: gph COG0546 # Protein_GI_number: 16131263 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Escherichia coli K12 # 1     252       1     252     252     493  100.0  1e-139
MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEERVITWIGNGADVLMER
ALTWARQERATQRKTMGKPPVDDDIPAEEQVRILRKLFDRYYGEVAEEGTFLFPHVADTL
GALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGGDDVQNKKPHPDPLLLVAERM
GIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGEAIDLSQPDVIYQSINDLLPALG
LPHSENQESKND
>gi|223713508|gb|ACDM01000090.1| GENE    97    104859  -    105863   1175    334 aa, chain + ## HITS:1  COG:trpS KEGG:ns NR:ns ## COG: trpS COG0180 # Protein_GI_number: 16131262 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Escherichia coli K12 # 1     334       1     334     334     684  100.0  0
MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKAT
LDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYAEN
INAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGEIFKVPEPFIP
KSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYDVQNK
AGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQERYHRFRNDEA
FLQQVMKDGAEKASAHASRTLKAVYEAIGFVAKP
>gi|223713508|gb|ACDM01000090.1| GENE    98    106153  -    107058    786    301 aa, chain + ## HITS:1  COG:no KEGG:B21_03187 NR:ns ## KEGG: B21_03187 # Name: yhfZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     301       1     301     301     605  100.0  1e-172
MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELANECRSSVGLTQAALKTLESSGAIR
IERRGRNGSYLVEMDNKALLTHVDINNVVCAMPLPYTRLYEGLASGLKAQFDGIPFYYAH
MRGADIRVECLLNGVYDMAVVSRLAAESYLTQKGLCLALELGPHTYVGEHQLICRKGESA
NVKRVGLDNRSADQKIMTDVFFGGSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENELT
MLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHALLAHQQRVVSGEQEPS
Y
>gi|223713508|gb|ACDM01000090.1| GENE    99    107075  -    107437    381    120 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C3880 NR:ns ## KEGG: UTI89_C3880 # Name: yhfY # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     120      15     134     134     219   97.0  3e-56
METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASVLMRSRRGE
EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV
>gi|223713508|gb|ACDM01000090.1| GENE   100    107516  -    108679   1176    387 aa, chain + ## HITS:1  COG:yhfX KEGG:ns NR:ns ## COG: yhfX COG3457 # Protein_GI_number: 16131259 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid racemase # Organism: Escherichia coli K12 # 1     387       1     387     387     792  100.0  0
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMT
KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVADAVEQG
TDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPGQESGFALKVLPEIVAEIQ
NLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQLAKSGIALEQLNAPSATSCT
SLPLLAQYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
RGHAQHALVFTPENQKITETNLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSD
VVLVSGIHRGEPEIVGRYDSLGNSLGA
>gi|223713508|gb|ACDM01000090.1| GENE   101    108679  -    109905   1247    408 aa, chain + ## HITS:1  COG:yhfW KEGG:ns NR:ns ## COG: yhfW COG1015 # Protein_GI_number: 16131258 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Escherichia coli K12 # 1     408       1     408     408     825   99.0  0
MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQLPTLEKLGLINALGYA
PGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRMPFRDVIDRVEQALVSAGW
QVERRGDDLQFLWVNQAVAIGDNLEADLGQVYNITANLSVISFDDAIKIGRIVREQVQVG
RVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYDNGFQVVHMGYGVDEKVQVPQKL
YEAGVPTVLVGKVADIVNNPYGVSWQNLVDSQRIMDITLNEFNTHPTAFICTNIQETDLA
GHAEDVARYAERLQVVDRNLARLVEAMQPDDCLVVMADHGNDPTIGHSHHTREVVPVLVY
QQGMIATQLGVRTTLSDVGATVCEFFRAPPPQNGRSFLSSLRFAGDTL
>gi|223713508|gb|ACDM01000090.1| GENE   102    109902  -    110780   1024    292 aa, chain + ## HITS:1  COG:php KEGG:ns NR:ns ## COG: php COG1735 # Protein_GI_number: 16131257 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Escherichia coli K12 # 1     292       1     292     292     593  100.0  1e-169
MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMG
RNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKA
GIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLS
RVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVML
SMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ
>gi|223713508|gb|ACDM01000090.1| GENE   103    110791  -    111144    511    117 aa, chain + ## HITS:1  COG:no KEGG:UTI89_C3876 NR:ns ## KEGG: UTI89_C3876 # Name: yhfU # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1     117      14     130     130     215  100.0  4e-55
MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAAL
SIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK
>gi|223713508|gb|ACDM01000090.1| GENE   104    111156  -    112460   1412    434 aa, chain + ## HITS:1  COG:no KEGG:EC55989_3782 NR:ns ## KEGG: EC55989_3782 # Name: yhfT # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1     434       1     434     434     729  100.0  0
MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYMNRREAGSIAFGLSIGF
VASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQLLT
ALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLIAAVVVLMTRVVVVRYFPHLN
PESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIAIVGALIA
AVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVPLIATTALAT
GVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRYPSVRNASDNIR
NAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQKMAAPVVAVMITGI
LLNVLYWLGLFVPA
>gi|223713508|gb|ACDM01000090.1| GENE   105    112472  -    113557    976    361 aa, chain + ## HITS:1  COG:no KEGG:JW3339 NR:ns ## KEGG: JW3339 # Name: yhfS # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     361       1     361     361     662  100.0  0
MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLA
DAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDF
NDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVAR
IGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLV
FAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKR
GALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIAS
I
>gi|223713508|gb|ACDM01000090.1| GENE   106    113709  -    114440    690    243 aa, chain - ## HITS:1  COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     243      23     265     265     499   99.0  1e-141
MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLV
ADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATKEKVIEQERVSAAPFCEKL
NIPGNSEVFHLCRVMYLDQEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVV
SDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDN
KRH
>gi|223713508|gb|ACDM01000090.1| GENE   107    114540  -    115325    824    261 aa, chain - ## HITS:1  COG:yhfQ KEGG:ns NR:ns ## COG: yhfQ COG0524 # Protein_GI_number: 16131252 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1     261       1     261     261     520  100.0  1e-147
MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDL
ARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHA
AIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDFAFASAPQEDETLRLKMKA
IVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVIDTMGAGDSFIAGFLCGWSAGMTL
PQAIAQGTACAAKTIQYHGAW
>gi|223713508|gb|ACDM01000090.1| GENE   108    115322  -    116152    968    276 aa, chain - ## HITS:1  COG:ECs4223 KEGG:ns NR:ns ## COG: ECs4223 COG1082 # Protein_GI_number: 15833477 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Escherichia coli O157:H7 # 1     275       1     275     275     564   99.0  1e-161
MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ
MPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP
NVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMV
DICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIERGY
EGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
>gi|223713508|gb|ACDM01000090.1| GENE   109    116202  -    117224   1203    340 aa, chain - ## HITS:1  COG:yhfN KEGG:ns NR:ns ## COG: yhfN COG2222 # Protein_GI_number: 16131249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Escherichia coli K12 # 1     340       8     347     347     725  100.0  0
MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQ
TAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGA
LTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLAPNAEIGKIKNDL
KQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGC
VIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQGL
HPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLVEY
>gi|223713508|gb|ACDM01000090.1| GENE   110    117245  -    118582   1520    445 aa, chain - ## HITS:1  COG:yhfM KEGG:ns NR:ns ## COG: yhfM COG0531 # Protein_GI_number: 16131248 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1     445      18     462     462     780   99.0  0
MGSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQM
CVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT
PIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENF
AAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALISSCLLVL
VLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV
MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLV
MCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICA
VIVIATGLPAYAFWAKRSRQLNALS
>gi|223713508|gb|ACDM01000090.1| GENE   111    118877  -    119044    243     55 aa, chain - ## HITS:1  COG:no KEGG:LF82_3285 NR:ns ## KEGG: LF82_3285 # Name: yhfL # Def: uncharacterized protein YhfL # Organism: E.coli_LF82 # Pathway: not_defined # 1      55       1      55      55     107  100.0  1e-22
MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ
>gi|223713508|gb|ACDM01000090.1| GENE   112    119291  -    120664   1467    457 aa, chain - ## HITS:1  COG:cysG_2 KEGG:ns NR:ns ## COG: cysG_2 COG0007 # Protein_GI_number: 16131246 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Escherichia coli K12 # 211     457       1     247     247     503  100.0  1e-142
MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTL
VEGPFDESLLDTCWLAIAATDDDALNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRS
PLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQLRGRVKQQFATMGERRRFWE
KLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQ
QADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLK
GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLITGHL
KTGGELDWENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPGEMPVAIVENGTAVTQRVID
GTLTQLGELAQQMNSPSLIIIGRVVGLRDKLNWFSNH
>gi|223713508|gb|ACDM01000090.1| GENE   113    120683  -    121489    956    268 aa, chain - ## HITS:1  COG:nirCm KEGG:ns NR:ns ## COG: nirCm COG2116 # Protein_GI_number: 16132233 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1     268       1     268     268     468  100.0  1e-132
MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLV
MGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMWAILPQTWLGNLVGSVFVA
MLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMALRTEGAAKF
IAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYTLAGIGHNLLWVTLGNTLSGAVF
MGLGYWYATPKANRPVADKFNQTETAAG
>gi|223713508|gb|ACDM01000090.1| GENE   114    121615  -    121941    478    108 aa, chain - ## HITS:1  COG:ECs4217 KEGG:ns NR:ns ## COG: ECs4217 COG2146 # Protein_GI_number: 15833471 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1     108       1     108     108     223  100.0  8e-59
MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIA
EHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG
>gi|223713508|gb|ACDM01000090.1| GENE   115    121938  -    124481   3090    847 aa, chain - ## HITS:1  COG:nirB KEGG:ns NR:ns ## COG: nirB COG1251 # Protein_GI_number: 16131244 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Escherichia coli K12 # 1     847       1     847     847    1740  100.0  0
MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEE
LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKG
SDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPML
MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS
TGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA
QVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLI
VSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPD
SAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIE
VNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYI
LKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGS
QRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVE
LENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLL
AADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLE
EEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPV
TLVEDNA
>gi|223713508|gb|ACDM01000090.1| GENE   116    124743  -    125924   1309    393 aa, chain - ## HITS:1  COG:yhfC KEGG:ns NR:ns ## COG: yhfC COG0477 # Protein_GI_number: 16131243 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     393       1     393     393     684  100.0  0
MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSSMSNTFTFLNAGILISI
FLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSAAMFILGVVSGITMSIGTFL
VTQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSIEWYWVYACIGLVYVAIFILT
FGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILGQLGFISWVPEYAKGLGMSL
NDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAGLAAILMYVFNTGTPAHMAWSI
LALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVLTCGTIGTMLTFVVTGPIVEHSGPQAA
LLTANGLYAVVFVMCFLLGFVSRHRQHNTLTSH
>gi|223713508|gb|ACDM01000090.1| GENE   117    126195  -    126767    573    190 aa, chain + ## HITS:1  COG:ECs4214 KEGG:ns NR:ns ## COG: ECs4214 COG0652 # Protein_GI_number: 15833468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Escherichia coli O157:H7 # 1     190       1     190     190     359  100.0  2e-99
MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYV
NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADK
DSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKP
VVILSAKVLP
>gi|223713508|gb|ACDM01000090.1| GENE   118    126872  -    127039    129     55 aa, chain + ## HITS:1  COG:no KEGG:SDY_3524 NR:ns ## KEGG: SDY_3524 # Name: yhfG # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1      55       1      55      55      72  100.0  4e-12
MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER
>gi|223713508|gb|ACDM01000090.1| GENE   119    127029  -    127631    735    200 aa, chain + ## HITS:1  COG:fic KEGG:ns NR:ns ## COG: fic COG2184 # Protein_GI_number: 16131240 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Escherichia coli K12 # 1     200       1     200     200     398  100.0  1e-111
MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRAATIELGPLVRGLPHLR
TIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKF
VERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMG
DLTALQMIFSKVVSEAGESE
>gi|223713508|gb|ACDM01000090.1| GENE   120    127663  -    128226    484    187 aa, chain + ## HITS:1  COG:pabA KEGG:ns NR:ns ## COG: pabA COG0512 # Protein_GI_number: 16131239 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Escherichia coli K12 # 1     187       1     187     187     400  100.0  1e-112
MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG
ISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLAN
PLTVTRYHSLVVEPDSLPACFDVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQL
LANFLHR
>gi|223713508|gb|ACDM01000090.1| GENE   121    128312  -    129532   1328    406 aa, chain + ## HITS:1  COG:argD KEGG:ns NR:ns ## COG: argD COG4992 # Protein_GI_number: 16131238 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1     406       1     406     406     822  100.0  0
MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEYVDFAGGIAVTALGHCH
PALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERVVFMNSGTEANETAFKLAR
HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVK
AVMDDHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLFA
YMHYGVTPDILTSAKALGGGFPISAMLTTAEIASAFHPGSHGSTYGGNPLACAVAGAAFD
IINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAELKPQYKGRARDFLYA
GAEAGVMVLNAGPDVMRFAPSLVVEDADIDEGMQRFAHAVAKVVGA
>gi|223713508|gb|ACDM01000090.1| GENE   122    129599  -    131689   1679    696 aa, chain - ## HITS:1  COG:ECs4209 KEGG:ns NR:ns ## COG: ECs4209 COG1289 # Protein_GI_number: 15833463 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     696       1     696     696    1332  100.0  0
MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVPACCNIAGLDTPHKRFF
KRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTAELGPLHAKLLPASLLAAI
FTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQPLRESLSLLYRELADYCEAKY
SLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLSAQNNTDYKRMLRIFQEALDLQE
HISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARLRVLADDILYHRLPTRFTMEKQIGA
LEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPLYARDLLADKQRRMPLLPALKSYLSLK
SPALRNAGRLSVMLSVASLMGTALHLPKSYWILMTVLLVTQNGYGATRLRIVNRSVGTVV
GLIIAGVALHFKIPEGYTLTLMLITTLASYLILRKNYGWATVGFTITAVYTLQLLWLNGE
QYILPRLIDTIIGCLIAFGGTVWLWPQWQSGLLRKNAHDALEAYQEAIRLILSEDPQPTP
LAWQRMRVNQAHNTLYNSLNQAMQEPAFNSHYLADMKLWVTHSQFIVEHINAMTTLAREH
RALPPELAQEYLQSCEIAIQRCQQRLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQ
RVIGHLNTMHTISSMAWRQRPHHGIWLSRKLRDSKA
>gi|223713508|gb|ACDM01000090.1| GENE   123    131740  -    132372    878    210 aa, chain - ## HITS:1  COG:ECs4208 KEGG:ns NR:ns ## COG: ECs4208 COG0664 # Protein_GI_number: 15833462 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 1     210       1     210     210     418  100.0  1e-117
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM
ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ
MARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCS
RETVGRILKMLEDQNLISAHGKTIVVYGTR
>gi|223713508|gb|ACDM01000090.1| GENE   124    132674  -    133078    444    134 aa, chain + ## HITS:1  COG:ECs4207 KEGG:ns NR:ns ## COG: ECs4207 COG1765 # Protein_GI_number: 15833461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1     134       1     134     134     257  100.0  3e-69
MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR
QDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE
KAVNITHSYEVVAA
>gi|223713508|gb|ACDM01000090.1| GENE   125    133133  -    134002    870    289 aa, chain - ## HITS:1  COG:prkB KEGG:ns NR:ns ## COG: prkB COG3954 # Protein_GI_number: 16131234 # Func_class: C Energy production and conversion # Function: Phosphoribulokinase # Organism: Escherichia coli K12 # 1     289       1     289     289     595  100.0  1e-170
MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDMAIRKAR
DAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTPWQPL
PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVM
DSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFAAKGIPSLDESFVVIHFRNLEGI
DFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIMLPLVQRLMEGKKIE
>gi|223713508|gb|ACDM01000090.1| GENE   126    134056  -    134274    336     72 aa, chain - ## HITS:1  COG:ECs4205 KEGG:ns NR:ns ## COG: ECs4205 COG3089 # Protein_GI_number: 15833459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      72       1      72      72     130  100.0  4e-31
MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKRQLQCGEAVLVWSELHE
TVNIMPRSQFRE
>gi|223713508|gb|ACDM01000090.1| GENE   127    134268  -    135230    930    320 aa, chain - ## HITS:1  COG:yheT KEGG:ns NR:ns ## COG: yheT COG0429 # Protein_GI_number: 16131232 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta-hydrolase fold # Organism: Escherichia coli K12 # 1     320      21     340     340     678  100.0  0
MRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSENPAQAQHKPRLVVFHG
LEGSLNSPYAHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQR
EFGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQ
RYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCS
AMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPPQVEYQLTEHGGHVGFIGGTLLHPQ
MWLESRIPDWLTTYLEAKSC
>gi|223713508|gb|ACDM01000090.1| GENE   128    135290  -    137203   2447    637 aa, chain - ## HITS:1  COG:ECs4203 KEGG:ns NR:ns ## COG: ECs4203 COG0488 # Protein_GI_number: 15833457 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1     637       1     637     637    1209  100.0  0
MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF
PGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAI
DAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL
DLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRAT
RLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRF
SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG
ELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQ
GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGAL
VVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENANSA
QARKDQKRREAELRAQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELT
ACLQQQASAKSGLEECEMAWLEAQEQLEQMLLEGQSN
>gi|223713508|gb|ACDM01000090.1| GENE   129    137334  -    137885    455    183 aa, chain + ## HITS:1  COG:ECs4202 KEGG:ns NR:ns ## COG: ECs4202 COG2249 # Protein_GI_number: 15833456 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1     183       2     184     184     365  100.0  1e-101
MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLRE
HEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRY
DALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSAQELASHARAYGDWLANPLSP
GGR
>gi|223713508|gb|ACDM01000090.1| GENE   130    137885  -    139690   1056    601 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 7     590       9     612     618 411  36 1e-113
MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFS
ELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALLAGLLMLTDFAWQAAVVGG
IGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW
MKVGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGSALFMDALGLSMA
LGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVVISVVV
LVAVKILVLYLLARLYGVRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLV
TVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDEKPWVNDDKPQVIVVGFGRFGQVIGRLLM
ANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAESIVITCNEPEDTMK
LVEICQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQ
AQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQREMQQERRQLDGWDEF
E
>gi|223713508|gb|ACDM01000090.1| GENE   131    139700  -    139900    225     66 aa, chain + ## HITS:1  COG:Z4708 KEGG:ns NR:ns ## COG: Z4708 COG3529 # Protein_GI_number: 15803863 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Escherichia coli O157:H7 EDL933 # 1      66       1      66      66     120  100.0  6e-28
MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVI
GIFHPD
>gi|223713508|gb|ACDM01000090.1| GENE   132    139995  -    140585    732    196 aa, chain + ## HITS:1  COG:ECs4200 KEGG:ns NR:ns ## COG: ECs4200 COG1047 # Protein_GI_number: 15833454 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Escherichia coli O157:H7 # 1     148       1     148     196     271  100.0  7e-73
MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV
AVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVD
GNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHG
GEGCCGGKGNGGCGCH
>gi|223713508|gb|ACDM01000090.1| GENE   133    140634  -    140852    315     72 aa, chain - ## HITS:1  COG:ECs4199 KEGG:ns NR:ns ## COG: ECs4199 COG2900 # Protein_GI_number: 15833453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      72       1      72      72     100  100.0  7e-22
MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNI
ASQAEETPPPHY
>gi|223713508|gb|ACDM01000090.1| GENE   134    141073  -    141885   1002    270 aa, chain + ## HITS:1  COG:ECs4198 KEGG:ns NR:ns ## COG: ECs4198 COG0545 # Protein_GI_number: 15833452 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1     259       1     259     270     416   99.0  1e-116
MKSLFKVTLLATTMAVALHAPITFAAEAAKPATAADSKAAFKNDDQKSAYALGASLGRYM
ENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKD
AADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKE
FDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLV
FDVELLDVKPAPKADAKPEADAKAADSAKK
>gi|223713508|gb|ACDM01000090.1| GENE   135    142052  -    142774    772    240 aa, chain + ## HITS:1  COG:yheO KEGG:ns NR:ns ## COG: yheO COG2964 # Protein_GI_number: 16131225 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     240       5     244     244     469  100.0  1e-132
MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCS
AIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFTRAKSGVLMKSLTIAIRNR
EQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFASSVEDLVTQTLEFTIEEVNA
DRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIRQFKSGDFQGQDK
>gi|223713508|gb|ACDM01000090.1| GENE   136    142774  -    143160    389    128 aa, chain + ## HITS:1  COG:yheN KEGG:ns NR:ns ## COG: yheN COG1553 # Protein_GI_number: 16131224 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Escherichia coli K12 # 1     128       1     128     128     227  100.0  3e-60
MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDL
VRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEASL
TCDRVVQF
>gi|223713508|gb|ACDM01000090.1| GENE   137    143160  -    143519    215    119 aa, chain + ## HITS:1  COG:yheM KEGG:ns NR:ns ## COG: yheM COG2923 # Protein_GI_number: 16131223 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in the oxidation of intracellular sulfur # Organism: Escherichia coli K12 # 1     119       1     119     119     226  100.0  8e-60
MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPDAVLARD
YIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVILRF
>gi|223713508|gb|ACDM01000090.1| GENE   138    143527  -    143814    281     95 aa, chain + ## HITS:1  COG:yheL KEGG:ns NR:ns ## COG: yheL COG2168 # Protein_GI_number: 16131222 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in oxidation of intracellular sulfur # Organism: Escherichia coli K12 # 1      95       1      95      95     181  100.0  4e-46
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNED
LIARGLTGQISNDIILIDYTDFVRLTVKHPSQMAW
>gi|223713508|gb|ACDM01000090.1| GENE   139    143880  -    144314    744    144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|226956878|ref|YP_002807671.1| 30S ribosomal subunit protein S12 [Escherichia sp. 1_1_43] # 1     144       1     144     144 291  99 2e-77
MCEDVLLRVYEAKAKTRSYLMATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTT
TPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRG
ALDCSGVKDRKQARSKYGVKRPKA
>gi|223713508|gb|ACDM01000090.1| GENE   140    144411  -    144881    777    156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803854|ref|NP_289888.1| 30S ribosomal protein S7 [Escherichia coli O157:H7 EDL933] # 1     156       1     156     156 303  100 2e-81
MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE
AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL
ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW
>gi|223713508|gb|ACDM01000090.1| GENE   141    144978  -    147092   2340    704 aa, chain + ## HITS:1  COG:ECs4191 KEGG:ns NR:ns ## COG: ECs4191 COG0480 # Protein_GI_number: 15833445 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Escherichia coli O157:H7 # 1     704       1     704     704    1402  100.0  0
MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG
ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ
PQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFT
GVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGG
EELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILD
DGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERF
GRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAV
EPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVE
ANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDI
KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIA
FKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPL
SEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARGK
>gi|223713508|gb|ACDM01000090.1| GENE   142    147163  -    147297    176     45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1      44       1      44     407 72  72 1e-11
MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:33:42 2011
 Seq name: gi|223713507|gb|ACDM01000091.1| Escherichia sp. 4_1_40B cont1.91, whole genome shotgun sequence 
 Length of sequence - 41163 bp
 Number of predicted genes - 61, with homology - 60
 Number of transcription units - 12, operones - 9 average op.length -  6.4
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       209 -       268    7.1 
     1     1 Tu  1     .       +    CDS        311 -      3004   2246  ## JW3300 periplasmic endochitinase
                               +    Term      3008 -      3049    4.1 
                               +    Prom      3093 -      3152    4.0 
     2     2 Op  1   9/0.000   +    CDS       3173 -      3367    172  ## COG2906 Bacterioferritin-associated ferredoxin
     3     2 Op  2     .       +    CDS       3439 -      3915    626  ## COG2193 Bacterioferritin (cytochrome b1)
                               -    Term      3858 -      3893    2.6 
     4     3 Op  1     .       -    CDS       3944 -      4621    483  ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases
     5     3 Op  2     .       -    CDS       4621 -      4911    216  ## EcHS_A3528 general secretion pathway protein M
     6     3 Op  3     .       -    CDS       4928 -      5083     91  ## EcHS_A3528 general secretion pathway protein M
     7     3 Op  4   4/0.667   -    CDS       5080 -      6243    463  ## COG3297 Type II secretory pathway, component PulL
     8     3 Op  5   7/0.000   -    CDS       6258 -      7241    509  ## COG3156 Type II secretory pathway, component PulK
     9     3 Op  6  12/0.000   -    CDS       7234 -      7821    409  ## COG4795 Type II secretory pathway, component PulJ
    10     3 Op  7  12/0.000   -    CDS       7814 -      8191    188  ## COG2165 Type II secretory pathway, pseudopilin PulG
    11     3 Op  8  12/0.000   -    CDS       8188 -      8697    287  ## COG2165 Type II secretory pathway, pseudopilin PulG
    12     3 Op  9  10/0.000   -    CDS       8705 -      9142    499  ## COG2165 Type II secretory pathway, pseudopilin PulG
    13     3 Op 10  24/0.000   -    CDS       9152 -     10348    909  ## COG1459 Type II secretory pathway, component PulF
    14     3 Op 11   6/0.000   -    CDS      10345 -     11826   1029  ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
    15     3 Op 12     .       -    CDS      11836 -     13788   1561  ## COG1450 Type II secretory pathway, component PulD
    16     3 Op 13     .       -    CDS      13772 -     14485     71  ## COG3031 Type II secretory pathway, component PulC
                               -    Prom     14677 -     14736   14.3 
                               +    Prom     14682 -     14741   11.4 
    17     4 Op  1     .       +    CDS      14767 -     16236    351  ## JW3285 general secretory pathway component, cryptic
    18     4 Op  2     .       +    CDS      16238 -     16657    296  ## B21_03124 hypothetical protein
    19     5 Tu  1     .       -    CDS      16626 -     16832    103  ## 
                               -    Prom     16865 -     16924    2.2 
                               +    Prom     16665 -     16724    4.3 
    20     6 Op  1  40/0.000   +    CDS      16895 -     17206    513  ## PROTEIN SUPPORTED gi|15803848|ref|NP_289882.1| 30S ribosomal protein S10
    21     6 Op  2  58/0.000   +    CDS      17239 -     17868   1052  ## PROTEIN SUPPORTED gi|15803847|ref|NP_289881.1| 50S ribosomal protein L3
    22     6 Op  3  61/0.000   +    CDS      17879 -     18484    992  ## PROTEIN SUPPORTED gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4
    23     6 Op  4  61/0.000   +    CDS      18481 -     18783    490  ## PROTEIN SUPPORTED gi|15803845|ref|NP_289879.1| 50S ribosomal protein L23
    24     6 Op  5  60/0.000   +    CDS      18801 -     19622   1438  ## PROTEIN SUPPORTED gi|15803844|ref|NP_289878.1| 50S ribosomal protein L2
    25     6 Op  6  59/0.000   +    CDS      19639 -     19917    484  ## PROTEIN SUPPORTED gi|15803843|ref|NP_289877.1| 30S ribosomal protein S19
    26     6 Op  7  61/0.000   +    CDS      19932 -     20264    537  ## PROTEIN SUPPORTED gi|15803842|ref|NP_289876.1| 50S ribosomal protein L22
    27     6 Op  8  50/0.000   +    CDS      20282 -     20983   1183  ## PROTEIN SUPPORTED gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3
    28     6 Op  9  50/0.000   +    CDS      20996 -     21406    694  ## PROTEIN SUPPORTED gi|15803840|ref|NP_289874.1| 50S ribosomal protein L16
    29     6 Op 10  50/0.000   +    CDS      21406 -     21597    301  ## PROTEIN SUPPORTED gi|15803839|ref|NP_289873.1| 50S ribosomal protein L29
    30     6 Op 11  50/0.000   +    CDS      21597 -     21851    431  ## PROTEIN SUPPORTED gi|15803838|ref|NP_289872.1| 30S ribosomal protein S17
                               +    Term     21873 -     21916   10.3 
                               +    Prom     21885 -     21944    7.1 
    31     7 Op  1  57/0.000   +    CDS      22016 -     22387    617  ## PROTEIN SUPPORTED gi|15803837|ref|NP_289871.1| 50S ribosomal protein L14
    32     7 Op  2  48/0.000   +    CDS      22398 -     22712    516  ## PROTEIN SUPPORTED gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24
    33     7 Op  3  50/0.000   +    CDS      22727 -     23266    911  ## PROTEIN SUPPORTED gi|15803835|ref|NP_289869.1| 50S ribosomal protein L5
    34     7 Op  4  50/0.000   +    CDS      23281 -     23586    513  ## PROTEIN SUPPORTED gi|15803834|ref|NP_289868.1| 30S ribosomal protein S14
    35     7 Op  5  55/0.000   +    CDS      23620 -     24012    641  ## PROTEIN SUPPORTED gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8
    36     7 Op  6  46/0.000   +    CDS      24025 -     24558    902  ## PROTEIN SUPPORTED gi|15803832|ref|NP_289866.1| 50S ribosomal protein L6
    37     7 Op  7  56/0.000   +    CDS      24568 -     24921    572  ## PROTEIN SUPPORTED gi|15803831|ref|NP_289865.1| 50S ribosomal protein L18
    38     7 Op  8  50/0.000   +    CDS      24936 -     25439    834  ## PROTEIN SUPPORTED gi|15803830|ref|NP_289864.1| 30S ribosomal protein S5
    39     7 Op  9  48/0.000   +    CDS      25443 -     25622    291  ## PROTEIN SUPPORTED gi|15803829|ref|NP_289863.1| 50S ribosomal protein L30
    40     7 Op 10  53/0.000   +    CDS      25626 -     26060    715  ## PROTEIN SUPPORTED gi|16131180|ref|NP_417760.1| 50S ribosomal subunit protein L15
    41     7 Op 11   3/0.667   +    CDS      26068 -     27399   1258  ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11
    42     7 Op 12     .       +    CDS      27431 -     27547    198  ## PROTEIN SUPPORTED gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36
                               +    Term     27577 -     27618    8.2 
                               +    Prom     27589 -     27648    3.9 
    43     8 Op  1  48/0.000   +    CDS      27694 -     28050    586  ## PROTEIN SUPPORTED gi|15803825|ref|NP_289859.1| 30S ribosomal protein S13
    44     8 Op  2  36/0.000   +    CDS      28067 -     28456    669  ## PROTEIN SUPPORTED gi|15803824|ref|NP_289858.1| 30S ribosomal protein S11
    45     8 Op  3  26/0.000   +    CDS      28490 -     29110   1038  ## PROTEIN SUPPORTED gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4
    46     8 Op  4  50/0.000   +    CDS      29136 -     30125   1011  ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit
    47     8 Op  5     .       +    CDS      30166 -     30549    636  ## PROTEIN SUPPORTED gi|15803821|ref|NP_289855.1| 50S ribosomal protein L17
                               +    Term     30570 -     30595   -0.5 
                               +    Prom     30568 -     30627    6.0 
    48     9 Op  1     .       +    CDS      30656 -     31024    234  ## SSON_3434 hypothetical protein
    49     9 Op  2     .       +    CDS      31035 -     31460    367  ## COG0789 Predicted transcriptional regulators
                               +    Term     31671 -     31723    9.5 
    50    10 Op  1   7/0.000   -    CDS      31731 -     32141    483  ## COG1970 Large-conductance mechanosensitive channel
                               -    Prom     32175 -     32234    6.9 
                               -    Term     32230 -     32269    8.6 
    51    10 Op  2   8/0.000   -    CDS      32271 -     33647   1191  ## COG0569 K+ transport systems, NAD-binding component
    52    10 Op  3  20/0.000   -    CDS      33669 -     34931   1115  ## COG0144 tRNA and rRNA cytosine-C5-methylases
                               -    Term     34959 -     34987    2.1 
    53    10 Op  4  26/0.000   -    CDS      35004 -     35951    946  ## COG0223 Methionyl-tRNA formyltransferase
    54    10 Op  5     .       -    CDS      35966 -     36475    520  ## COG0242 N-formylmethionyl-tRNA deformylase
                               -    Prom     36514 -     36573    3.5 
                               +    Prom     36409 -     36468    2.4 
    55    11 Op  1   8/0.000   +    CDS      36605 -     37729    391  ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
    56    11 Op  2   7/0.000   +    CDS      37701 -     38174    660  ## COG2922 Uncharacterized protein conserved in bacteria
    57    11 Op  3   6/0.000   +    CDS      38203 -     38745    159  ## COG0551 Zn-finger domain associated with topoisomerase type I
    58    11 Op  4   8/0.000   +    CDS      38750 -     39322    405  ## COG0009 Putative translation factor (SUA5)
    59    11 Op  5     .       +    CDS      39327 -     40145    377  ## COG0169 Shikimate 5-dehydrogenase
    60    11 Op  6     .       +    CDS      40142 -     40399    175  ## B21_03082 hypothetical protein
    61    12 Tu  1     .       -    CDS      40375 -     40929    446  ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
                               -    Prom     41052 -     41111    5.8 
Predicted protein(s)
>gi|223713507|gb|ACDM01000091.1| GENE     1       311  -      3004   2246    897 aa, chain + ## HITS:1  COG:no KEGG:JW3300 NR:ns ## KEGG: JW3300 # Name: chiA # Def: periplasmic endochitinase # Organism: E.coli_J # Pathway: Amino sugar and nucleotide sugar metabolism [PATH:ecj00520] # 1     897       1     897     897    1625  100.0  0
MKLNIFTKSMIGMGLVCSALPALAMEAWNNQQGGNKYQVIFDGKIYENAWWVSSTNCPGK
AKANDATNPWRLKRTATAAEISQFGNTLSCEKSGSSSSSNSNTPASNTPANGGSATPAQG
TVPSNSSVVAWNKQQGGQTWYVVFNGAVYKNAWWVASSNCPGDAKSNDASNPWRYVRAAT
ATEISETSNPQSCTSAPQPSPDVKPAPDVKPAPDVQPAPADKSNDNYAVVAWKGQEGSST
WYVIYNGGIYKNAWWVGAANCPGDAKENDASNPWRYVRAATATEISQYGNPGSCSVKPDN
NGGAVTPVDPTPETPVTPTPDNSEPSTPADSVNDYSLQAWSGQEGSEIYHVIFNGNVYKN
AWWVGSKDCPRGTSAENSNNPWRLERTATAAELSQYGNPTTCEIDNGGVIVADGFQASKA
YSADSIVDYNDAHYKTSVDQDAWGFVPGGDNPWKKYEPAKAWSASTVYVKGDRVVVDGQA
YEALFWTQSDNPALVANQNATGSNSRPWKPLGKAQSYSNEELNNAPQFNPETLYASDTLI
RFNGVNYISQSKVQKVSPSDSNPWRVFVDWTGTKERVGTPKKAWPKHVYAPYVDFTLNTI
PDLAALAKNHNVNHFTLAFVVSKDANTCLPTWGTAYGMQNYAQYSKIKALREAGGDVMLS
IGGANNAPLAASCKNVDDLMQHYYDIVDNLNLKVLDFDIEGTWVADQASIERRNLAVKKV
QDKWKSEGKDIAIWYTLPILPTGLTPEGMNVLSDAKAKGVELAGVNVMTMDYGNAICQSA
NTEGQNIHGKCATSAIANLHSQLKGLHPNKSDAEIDAMMGTTPMVGVNDVQGEVFYLSDA
RLVMQDAQKRNLGMVGIWSIARDLPGGTNLSPEFHGLTKEQAPKYAFSEIFAPFTKQ
>gi|223713507|gb|ACDM01000091.1| GENE     2      3173  -      3367    172     64 aa, chain + ## HITS:1  COG:bfd KEGG:ns NR:ns ## COG: bfd COG2906 # Protein_GI_number: 16131216 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin-associated ferredoxin # Organism: Escherichia coli K12 # 1      64       1      64      64     119  100.0  1e-27
MYVCLCNGISDKKIRQAVRQFSPHSFQQLKKFIPVGNQCGKCVRAAREVMEDELMQLPEF
KESA
>gi|223713507|gb|ACDM01000091.1| GENE     3      3439  -      3915    626    158 aa, chain + ## HITS:1  COG:bfr KEGG:ns NR:ns ## COG: bfr COG2193 # Protein_GI_number: 16131215 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin (cytochrome b1) # Organism: Escherichia coli K12 # 1     158       1     158     158     277   99.0  6e-75
MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIE
RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRNMM
IEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG
>gi|223713507|gb|ACDM01000091.1| GENE     4      3944  -      4621    483    225 aa, chain - ## HITS:1  COG:hofD KEGG:ns NR:ns ## COG: hofD COG1989 # Protein_GI_number: 16131214 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Escherichia coli K12 # 1     225       1     225     225     361   99.0  1e-100
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILC
VAAAIACALAPFTPIVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYG
LIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLI
ASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY
>gi|223713507|gb|ACDM01000091.1| GENE     5      4621  -      4911    216     96 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A3528 NR:ns ## KEGG: EcHS_A3528 # Name: not_defined # Def: general secretion pathway protein M # Organism: E.coli_HS # Pathway: Bacterial secretion system [PATH:ecx03070] # 1      96      66     161     161     184  100.0  7e-46
MQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTLTIHPVTAPLENVSRW
LTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ
>gi|223713507|gb|ACDM01000091.1| GENE     6      4928  -      5083     91     51 aa, chain - ## HITS:1  COG:no KEGG:EcHS_A3528 NR:ns ## KEGG: EcHS_A3528 # Name: not_defined # Def: general secretion pathway protein M # Organism: E.coli_HS # Pathway: Bacterial secretion system [PATH:ecx03070] # 1      50       9      58     161      96   98.0  2e-19
MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEHQSHATKN
>gi|223713507|gb|ACDM01000091.1| GENE     7      5080  -      6243    463    387 aa, chain - ## HITS:1  COG:gspL KEGG:ns NR:ns ## COG: gspL COG3297 # Protein_GI_number: 16131212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulL # Organism: Escherichia coli K12 # 1     387       2     388     388     716  100.0  0
MPESLMVIRSSSTLRKHWEWMTFSADSVSSVHTLTDDLPLESLADQPGAGNVHLLIPPEG
LLYRSLTLPNAKYKLTAQTLQWLAEETLPDNTQDWHWTVVDKQNESVEVIGIQSEKLSRY
LERLHTAGLNVTRVLPDGCYLPWEVDSWTLVNQQTSWLIRSAAHAFNELDEHWLQHLAAQ
FPPENMLCYGVVPHGVAAANPLIQHPEIPSLSLYSADIAFQRYDMLHGIFRKQKTVSKSG
KWLARLAVSCLVLAILSFVGSRSIALWHTLKIEDQLQQQQQETWQRYFPQIKRTHNFRFY
FKQQLAQQYPEAVPLLYHLQTLLLEHPELQLMEANYSQKQKSLTLKMSAKSEANIDRFCE
LTQSWLPMEKTEKDPVSGVWTVRNSGK
>gi|223713507|gb|ACDM01000091.1| GENE     8      6258  -      7241    509    327 aa, chain - ## HITS:1  COG:gspK KEGG:ns NR:ns ## COG: gspK COG3156 # Protein_GI_number: 16131211 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulK # Organism: Escherichia coli K12 # 1     327       1     327     327     587  100.0  1e-167
MNNEQRGVALLIVLMLLALMAALAADMTLSFHSQLQRTRQVNHHLQRQYDIELAEKLALA
SLTQDVKDNDRQTTLQQYWAQPQQLQLEDGNTVKWQLRDAQHCFNLNALAKISDDPLASP
DFPAQVFSALLINAGIDRGNTDEIVQSIADYIDVDDSPRFHGAEDSFYQSQTPPRHSANQ
MLFLTGELRQIKGITENIYQRLIPYVCVLPTTELSINLNMLTENDIPLFRALFLNNITDA
DARVLLQKRPREGWLTTDAFLYWAQQDFSGVKPLVAQVKRHLFPYSRYFTLSTESISDEQ
SQGWQSHIFFNRKQQSAQIYRRTLQLY
>gi|223713507|gb|ACDM01000091.1| GENE     9      7234  -      7821    409    195 aa, chain - ## HITS:1  COG:gspJ KEGG:ns NR:ns ## COG: gspJ COG4795 # Protein_GI_number: 16131210 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Escherichia coli K12 # 1     195       1     195     195     325  100.0  4e-89
MINRQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQLQRTITILDN
DLLQLVARRNRSTDKIMVLGEEAIFTTQSRDPLAPLSEAQTLLTVHWYLRNHTLYRAVRT
SVDGRKDQPAQAMLEHVESFLLESNSGESQELPLSVTLHLQTQQYGGLQRRFALPEQLAR
EESPAQTQAGNNNHE
>gi|223713507|gb|ACDM01000091.1| GENE    10      7814  -      8191    188    125 aa, chain - ## HITS:1  COG:gspI KEGG:ns NR:ns ## COG: gspI COG2165 # Protein_GI_number: 16131209 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1     125      14     138     138     205  100.0  2e-53
MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSF
GEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTRYQSIDNKSG
QAQDD
>gi|223713507|gb|ACDM01000091.1| GENE    11      8188  -      8697    287    169 aa, chain - ## HITS:1  COG:hofH KEGG:ns NR:ns ## COG: hofH COG2165 # Protein_GI_number: 16131208 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1     169       1     169     169     320  100.0  9e-88
MNQQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETAARFTAALELAIDRATL
SGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQNDWDEELSIHLQPFKPDDSN
QPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLDQTLARDTRP
>gi|223713507|gb|ACDM01000091.1| GENE    12      8705  -      9142    499    145 aa, chain - ## HITS:1  COG:hofG KEGG:ns NR:ns ## COG: hofG COG2165 # Protein_GI_number: 16131207 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1     145       1     145     145     259  100.0  1e-69
MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK
LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL
LSAGPDGEMGTEDDITNWGLSKKKK
>gi|223713507|gb|ACDM01000091.1| GENE    13      9152  -     10348    909    398 aa, chain - ## HITS:1  COG:hofF KEGG:ns NR:ns ## COG: hofF COG1459 # Protein_GI_number: 16131206 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Escherichia coli K12 # 1     398       1     398     398     717  100.0  0
MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSE
LTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPT
LFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVII
LLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGN
NRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQR
LANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRI
ALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN
>gi|223713507|gb|ACDM01000091.1| GENE    14     10345  -     11826   1029    493 aa, chain - ## HITS:1  COG:gspE KEGG:ns NR:ns ## COG: gspE COG2804 # Protein_GI_number: 16131205 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli K12 # 1     493       1     493     493     933  100.0  0
MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEA
RLEAVFHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDLLNEDSAAPVIRLINAILSEAI
KETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLDIAEKRIPQD
GRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSLNNLGMTAADKQDLENLIQL
PHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVDMSF
ARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTLHTNSASGAVTRLRDMGV
ESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTPVGCPHCHQ
SGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKNGLQKVISGDTSWDE
VMRVASATLESEA
>gi|223713507|gb|ACDM01000091.1| GENE    15     11836  -     13788   1561    650 aa, chain - ## HITS:1  COG:gspD KEGG:ns NR:ns ## COG: gspD COG1450 # Protein_GI_number: 16131204 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Escherichia coli K12 # 1     650       5     654     654    1224  100.0  0
MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQG
TISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPG
VGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEV
IKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLI
ISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNAR
KPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDG
NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA
GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN
TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG
ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVY
RSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR
>gi|223713507|gb|ACDM01000091.1| GENE    16     13772  -     14485     71    237 aa, chain - ## HITS:1  COG:gspC KEGG:ns NR:ns ## COG: gspC COG3031 # Protein_GI_number: 16131203 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulC # Organism: Escherichia coli K12 # 1     237      35     271     271     449   99.0  1e-126
MNYFHTTIVKNGQIINQPTNAFQSDFSLAALWRNENHAGVKDANPVAVNQETPKLSIALN
GIVLTSNDETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKTSVVFETHGHYEKVTLH
PGLPDIIKQPDSESQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALR
INNLSLTHPDEVSQALSLLLTQQSAQFTIRRNGVPRLINVSVGELTGMNGLRHERTQ
>gi|223713507|gb|ACDM01000091.1| GENE    17     14767  -     16236    351    489 aa, chain + ## HITS:1  COG:no KEGG:JW3285 NR:ns ## KEGG: JW3285 # Name: gspA # Def: general secretory pathway component, cryptic # Organism: E.coli_J # Pathway: not_defined # 1     489       1     489     489     949  100.0  0
MSTRREVILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDKHRRVITLSLVVSWQGKA
AWIVTDDNAAEQGCRDSAWTRDEMAGQLLHALHRTDSRCPLIIIENAHLNHRRILDDLQR
AISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEHELKASILEGQNIDQPDLLLT
ARVLKRIALLCRGDRRKLALAGETIRLLQQAEQTSVFTAKQWRMIYRILGDNRPRKMQLA
VVMSGTIIALTCGWLLLSSFTATLPVPAWLIPVTPVVKQDMTKDIAHVVMRDSEALSVLY
GVWGYEVPADSAWCDQAVRAGLACKSGNASLQTLVDQNLPWIASLKVGDKKLPVVVVRVG
EASVDVLVGQQTWTLTHKWFESVWTGDYLLLWKMSPEGESTITRDSSEEEILWLETMLNR
ALHISTEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHLWQVAGESAYLYRDEANI
SPETTVKGK
>gi|223713507|gb|ACDM01000091.1| GENE    18     16238  -     16657    296    139 aa, chain + ## HITS:1  COG:no KEGG:B21_03124 NR:ns ## KEGG: B21_03124 # Name: pioO # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     139       1     139     139     263   99.0  2e-69
MFEFYIAAREQKETGHPGIFSRQKHSTIIYVICLLLICLWFAGMVLVGGYARQLWVLWIV
KAEVTVEAETPAFKQSTQHYFFKKQPLPVVESVEEEDDPGVAVENAPSSSEDEENTVEES
EEKAGLRERVKNALNELER
>gi|223713507|gb|ACDM01000091.1| GENE    19     16626  -     16832    103     68 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MGECNRSYVAPRLGALLGSQIRLTEVQIEPAVNYDKPAHYTYLTTERKRIASKVNSLRVI
SQVRSVHF
>gi|223713507|gb|ACDM01000091.1| GENE    20     16895  -     17206    513    103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803848|ref|NP_289882.1| 30S ribosomal protein S10 [Escherichia coli O157:H7 EDL933] # 1     103       1     103     103 202  100 3e-51
MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKD
ARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG
>gi|223713507|gb|ACDM01000091.1| GENE    21     17239  -     17868   1052    209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803847|ref|NP_289881.1| 50S ribosomal protein L3 [Escherichia coli O157:H7 EDL933] # 1     209       1     209     209 409  99 1e-113
MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLTNDGYRAIQVTTGAKKANRV
TKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAG
TVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRV
DAERNLLLVKGAVPGATGSDLIVKPAVKA
>gi|223713507|gb|ACDM01000091.1| GENE    22     17879  -     18484    992    201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933] # 1     201       1     201     201 386  100 1e-106
MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPW
RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV
VEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSL
IAFDKVVMTADAVKQVEEMLA
>gi|223713507|gb|ACDM01000091.1| GENE    23     18481  -     18783    490    100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803845|ref|NP_289879.1| 50S ribosomal protein L23 [Escherichia coli O157:H7 EDL933] # 1     100       1     100     100 193  100 2e-48
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNT
LVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE
>gi|223713507|gb|ACDM01000091.1| GENE    24     18801  -     19622   1438    273 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803844|ref|NP_289878.1| 50S ribosomal protein L2 [Escherichia coli O157:H7 EDL933] # 1     273       1     273     273 558  100 1e-158
MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQ
AYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV
DAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGE
MRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNF
GKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK
>gi|223713507|gb|ACDM01000091.1| GENE    25     19639  -     19917    484     92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803843|ref|NP_289877.1| 30S ribosomal protein S19 [Escherichia coli O157:H7 EDL933] # 1      92       1      92      92 191  100 8e-48
MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPV
FVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK
>gi|223713507|gb|ACDM01000091.1| GENE    26     19932  -     20264    537    110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803842|ref|NP_289876.1| 50S ribosomal protein L22 [Escherichia coli O157:H7 EDL933] # 1     110       1     110     110 211  100 6e-54
METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEH
NDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR
>gi|223713507|gb|ACDM01000091.1| GENE    27     20282  -     20983   1183    233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. Sakai] # 1     233       1     233     233 460  100 1e-129
MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP
AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI
TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA
DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK
>gi|223713507|gb|ACDM01000091.1| GENE    28     20996  -     21406    694    136 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803840|ref|NP_289874.1| 50S ribosomal protein L16 [Escherichia coli O157:H7 EDL933] # 1     136       1     136     136 271  100 4e-72
MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQ
GKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLA
AAKLPIKTTFVTKTVM
>gi|223713507|gb|ACDM01000091.1| GENE    29     21406  -     21597    301     63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803839|ref|NP_289873.1| 50S ribosomal protein L29 [Escherichia coli O157:H7 EDL933] # 1      63       1      63      63 120  100 1e-26
MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK
AGA
>gi|223713507|gb|ACDM01000091.1| GENE    30     21597  -     21851    431     84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803838|ref|NP_289872.1| 30S ribosomal protein S17 [Escherichia coli O157:H7 EDL933] # 1      84       1      84      84 170  100 1e-41
MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVE
IRECRPLSKTKSWTLVRVVEKAVL
>gi|223713507|gb|ACDM01000091.1| GENE    31     22016  -     22387    617    123 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803837|ref|NP_289871.1| 50S ribosomal protein L14 [Escherichia coli O157:H7 EDL933] # 1     123       1     123     123 242  100 3e-63
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA
VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP
EVL
>gi|223713507|gb|ACDM01000091.1| GENE    32     22398  -     22712    516    104 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24 [Escherichia coli O157:H7 EDL933] # 1     104       1     104     104 203  100 2e-51
MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVE
KEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
>gi|223713507|gb|ACDM01000091.1| GENE    33     22727  -     23266    911    179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803835|ref|NP_289869.1| 50S ribosomal protein L5 [Escherichia coli O157:H7 EDL933] # 1     179       1     179     179 355  100 2e-97
MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAI
SGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAK
SFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
>gi|223713507|gb|ACDM01000091.1| GENE    34     23281  -     23586    513    101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803834|ref|NP_289868.1| 30S ribosomal protein S14 [Escherichia coli O157:H7 EDL933] # 1     101       1     101     101 202  100 3e-51
MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQ
RNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
>gi|223713507|gb|ACDM01000091.1| GENE    35     23620  -     24012    641    130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8 [Escherichia coli O157:H7 EDL933] # 1     130       1     130     130 251  100 5e-66
MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELE
LTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAG
LGGEIICYVA
>gi|223713507|gb|ACDM01000091.1| GENE    36     24025  -     24558    902    177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803832|ref|NP_289866.1| 50S ribosomal protein L6 [Escherichia coli O157:H7 EDL933] # 1     177       1     177     177 352  100 3e-96
MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYAD
GWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAG
ITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK
>gi|223713507|gb|ACDM01000091.1| GENE    37     24568  -     24921    572    117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803831|ref|NP_289865.1| 50S ribosomal protein L18 [Escherichia coli O157:H7 EDL933] # 1     117       1     117     117 224  100 5e-58
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE
QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
>gi|223713507|gb|ACDM01000091.1| GENE    38     24936  -     25439    834    167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803830|ref|NP_289864.1| 30S ribosomal protein S5 [Escherichia coli O157:H7 EDL933] # 1     167       1     167     167 325  100 2e-88
MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAI
QKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGV
HNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK
>gi|223713507|gb|ACDM01000091.1| GENE    39     25443  -     25622    291     59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803829|ref|NP_289863.1| 50S ribosomal protein L30 [Escherichia coli O157:H7 EDL933] # 1      59       1      59      59 116  100 2e-25
MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE
>gi|223713507|gb|ACDM01000091.1| GENE    40     25626  -     26060    715    144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16131180|ref|NP_417760.1| 50S ribosomal subunit protein L15 [Escherichia coli str. K-12 substr. MG1655] # 1     144       1     144     144 280  100 1e-74
MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR
LPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPV
TVRGLRVTKGARAAIEAAGGKIEE
>gi|223713507|gb|ACDM01000091.1| GENE    41     26068  -     27399   1258    443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 12     440      16     444     447 489  56 1e-137
MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTI
IEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYT
RYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE
RGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERG
QRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGW
NWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGE
QTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQV
QTLMMSSQYESALKKANLKGYGR
>gi|223713507|gb|ACDM01000091.1| GENE    42     27431  -     27547    198     38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36 [Escherichia coli O157:H7 EDL933] # 1      38       1      38      38 80  100 1e-14
MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG
>gi|223713507|gb|ACDM01000091.1| GENE    43     27694  -     28050    586    118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803825|ref|NP_289859.1| 30S ribosomal protein S13 [Escherichia coli O157:H7 EDL933] # 1     118       1     118     118 230  99 1e-59
MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV
AKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK
>gi|223713507|gb|ACDM01000091.1| GENE    44     28067  -     28456    669    129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803824|ref|NP_289858.1| 30S ribosomal protein S11 [Escherichia coli O157:H7 EDL933] # 1     129       1     129     129 262  100 3e-69
MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTP
FAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNG
CRPPKKRRV
>gi|223713507|gb|ACDM01000091.1| GENE    45     28490  -     29110   1038    206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 EDL933] # 1     206       1     206     206 404  100 1e-112
MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK
VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH
KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG
TFKRKPERSDLSADINEHLIVELYSK
>gi|223713507|gb|ACDM01000091.1| GENE    46     29136  -     30125   1011    329 aa, chain + ## HITS:1  COG:ECs4160 KEGG:ns NR:ns ## COG: ECs4160 COG0202 # Protein_GI_number: 15833414 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Escherichia coli O157:H7 # 1     329       1     329     329     613  100.0  1e-175
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>gi|223713507|gb|ACDM01000091.1| GENE    47     30166  -     30549    636    127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803821|ref|NP_289855.1| 50S ribosomal protein L17 [Escherichia coli O157:H7 EDL933] # 1     127       1     127     127 249  100 2e-65
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV
ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE
KAEAAAE
>gi|223713507|gb|ACDM01000091.1| GENE    48     30656  -     31024    234    122 aa, chain + ## HITS:1  COG:no KEGG:SSON_3434 NR:ns ## KEGG: SSON_3434 # Name: yhdN # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1     122       1     122     122     224  100.0  1e-57
MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPEL
EQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKIN
DN
>gi|223713507|gb|ACDM01000091.1| GENE    49     31035  -     31460    367    141 aa, chain + ## HITS:1  COG:ECs4157 KEGG:ns NR:ns ## COG: ECs4157 COG0789 # Protein_GI_number: 15833411 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     141       1     141     141     247  100.0  4e-66
MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRHARQLGFS
LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHS
SVYCSILEALEQGASGVKSGC
>gi|223713507|gb|ACDM01000091.1| GENE    50     31731  -     32141    483    136 aa, chain - ## HITS:1  COG:ECs4156 KEGG:ns NR:ns ## COG: ECs4156 COG1970 # Protein_GI_number: 15833410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1     136       1     136     136     243  100.0  5e-65
MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT
LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEV
LLTEIRDLLKEQNNRS
>gi|223713507|gb|ACDM01000091.1| GENE    51     32271  -     33647   1191    458 aa, chain - ## HITS:1  COG:ECs4155 KEGG:ns NR:ns ## COG: ECs4155 COG0569 # Protein_GI_number: 15833409 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Escherichia coli O157:H7 # 1     458       1     458     458     871  100.0  0
MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLRE
AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPID
HLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPH
IDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGG
GNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDL
FIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLS
HVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVM
IANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL
>gi|223713507|gb|ACDM01000091.1| GENE    52     33669  -     34931   1115    420 aa, chain - ## HITS:1  COG:sun KEGG:ns NR:ns ## COG: sun COG0144 # Protein_GI_number: 16131168 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Escherichia coli K12 # 1     420      10     429     429     841  100.0  0
MAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARP
MTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQ
EELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWL
ALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEH
ILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ
WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT
LVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK
>gi|223713507|gb|ACDM01000091.1| GENE    53     35004  -     35951    946    315 aa, chain - ## HITS:1  COG:fmt KEGG:ns NR:ns ## COG: fmt COG0223 # Protein_GI_number: 16131167 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Escherichia coli K12 # 1     315       1     315     315     612  100.0  1e-175
MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG
LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG
AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL
ITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLE
IEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDL
LNSRREWFVPGNRLV
>gi|223713507|gb|ACDM01000091.1| GENE    54     35966  -     36475    520    169 aa, chain - ## HITS:1  COG:ECs4152 KEGG:ns NR:ns ## COG: ECs4152 COG0242 # Protein_GI_number: 15833406 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Escherichia coli O157:H7 # 1     169       1     169     169     291  100.0  3e-79
MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV
IDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE
LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA
>gi|223713507|gb|ACDM01000091.1| GENE    55     36605  -     37729    391    374 aa, chain + ## HITS:1  COG:smf KEGG:ns NR:ns ## COG: smf COG0758 # Protein_GI_number: 16132235 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Escherichia coli K12 # 1     374       1     374     374     746   99.0  0
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSI
ESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSW
YGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVNGVSIAVLGNGLNTIHPRRHA
RLAASLLEQGGALVSEFPLDVPPLAYNFSRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYS
PDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVR
LRRACHVRRTNVFV
>gi|223713507|gb|ACDM01000091.1| GENE    56     37701  -     38174    660    157 aa, chain + ## HITS:1  COG:smg KEGG:ns NR:ns ## COG: smg COG2922 # Protein_GI_number: 16131165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     157       1     157     157     270  100.0  5e-73
MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNALLWLEKLADYQEGLAEP
MQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVIERVLALDNAEFEL
DDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH
>gi|223713507|gb|ACDM01000091.1| GENE    57     38203  -     38745    159    180 aa, chain + ## HITS:1  COG:ZyrdD KEGG:ns NR:ns ## COG: ZyrdD COG0551 # Protein_GI_number: 15803811 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Escherichia coli O157:H7 EDL933 # 9     180       1     172     172     328   99.0  3e-90
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE
GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR
YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
>gi|223713507|gb|ACDM01000091.1| GENE    58     38750  -     39322    405    190 aa, chain + ## HITS:1  COG:yrdC KEGG:ns NR:ns ## COG: yrdC COG0009 # Protein_GI_number: 16131163 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Escherichia coli K12 # 1     190       1     190     190     374  100.0  1e-104
MNNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLIL
IAANYEQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTD
HPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLNPSEIRD
ALTGELFRQG
>gi|223713507|gb|ACDM01000091.1| GENE    59     39327  -     40145    377    272 aa, chain + ## HITS:1  COG:aroE KEGG:ns NR:ns ## COG: aroE COG0169 # Protein_GI_number: 16131162 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli K12 # 1     272       1     272     272     551  100.0  1e-157
METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV
TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGL
RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE
FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM
LVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA
>gi|223713507|gb|ACDM01000091.1| GENE    60     40142  -     40399    175     85 aa, chain + ## HITS:1  COG:no KEGG:B21_03082 NR:ns ## KEGG: B21_03082 # Name: yrdB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      85       1      85      85     155  100.0  4e-37
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHR
WDLEEEAENLIQEQSEDDQGWVWLP
>gi|223713507|gb|ACDM01000091.1| GENE    61     40375  -     40929    446    184 aa, chain - ## HITS:1  COG:ECs4145 KEGG:ns NR:ns ## COG: ECs4145 COG0663 # Protein_GI_number: 15833399 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli O157:H7 # 1     184      73     256     256     385  100.0  1e-107
MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNI
QDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVED
DVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGN
QTQP
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:34:37 2011
 Seq name: gi|223713506|gb|ACDM01000092.1| Escherichia sp. 4_1_40B cont1.92, whole genome shotgun sequence 
 Length of sequence - 71771 bp
 Number of predicted genes - 64, with homology - 63
 Number of transcription units - 45, operones - 13 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   2/0.833   -    CDS        186 -      1043    734  ## COG0796 Glutamate racemase
     2     1 Op  2     .       -    CDS        988 -      2832   1777  ## COG4206 Outer membrane cobalamin receptor protein
                               -    Prom      3068 -      3127    3.3 
                               +    Prom      3117 -      3176    6.0 
     3     2 Tu  1     .       +    CDS       3201 -      4301   1231  ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
                               -    Term      4293 -      4333    9.3 
     4     3 Op  1     .       -    CDS       4341 -      4700    411  ## LF82_3412 inner membrane protein YijD
     5     3 Op  2     .       -    CDS       4700 -      5404    667  ## COG1309 Transcriptional regulator
                               -    Prom      5626 -      5685    4.2 
                               +    Prom      5590 -      5649    4.2 
     6     4 Tu  1     .       +    CDS       5681 -      7081    431  ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1
                               -    Term      6791 -      6816   -0.8 
     7     5 Tu  1     .       -    CDS       7064 -      7981    929  ## COG0583 Transcriptional regulator
                               -    Prom      8015 -      8074    5.1 
                               -    Term      8191 -      8225    3.4 
     8     6 Op  1   2/0.833   -    CDS       8248 -      9621   1845  ## COG0165 Argininosuccinate lyase
     9     6 Op  2   8/0.000   -    CDS       9682 -     10455   1053  ## COG0548 Acetylglutamate kinase
    10     6 Op  3     .       -    CDS      10466 -     11470    919  ## COG0002 Acetylglutamate semialdehyde dehydrogenase
                               -    Prom     11582 -     11641    6.1 
                               +    Prom     11516 -     11575    3.3 
    11     7 Tu  1     .       +    CDS      11624 -     12775   1028  ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
                               +    Prom     13106 -     13165    5.3 
    12     8 Tu  1     .       +    CDS      13412 -     16024   3129  ## COG2352 Phosphoenolpyruvate carboxylase
                               +    Term     16042 -     16075    5.2 
                               +    Prom     16122 -     16181    3.5 
    13     9 Tu  1     .       +    CDS      16206 -     17939   1991  ## COG2194 Predicted membrane-associated, metal-dependent hydrolase
                               +    Term     18080 -     18112    1.3 
                               +    Prom     17962 -     18021    3.0 
    14    10 Tu  1     .       +    CDS      18154 -     19005    758  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Term     19084 -     19118   -1.0 
    15    11 Op  1   2/0.833   -    CDS      18992 -     19333    301  ## COG1445 Phosphotransferase system fructose-specific component IIB
    16    11 Op  2  11/0.000   -    CDS      19335 -     20213    571  ## COG1180 Pyruvate-formate lyase-activating enzyme
    17    11 Op  3   4/0.389   -    CDS      20179 -     22476   2311  ## COG1882 Pyruvate-formate lyase
    18    11 Op  4   7/0.167   -    CDS      22527 -     22847    551  ## COG1445 Phosphotransferase system fructose-specific component IIB
    19    11 Op  5     .       -    CDS      22862 -     23941   1331  ## COG1299 Phosphotransferase system, fructose-specific IIC component
                               -    Prom     24106 -     24165    3.3 
                               +    Prom     24006 -     24065    4.2 
    20    12 Op  1   2/0.833   +    CDS      24250 -     26751   2664  ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
    21    12 Op  2   3/0.667   +    CDS      26763 -     27425    860  ## COG0176 Transaldolase
    22    12 Op  3   1/0.944   +    CDS      27436 -     28539   1286  ## COG0371 Glycerol dehydrogenase and related enzymes
                               +    Prom     28580 -     28639    3.4 
    23    13 Tu  1     .       +    CDS      28814 -     29431    538  ## COG3738 Uncharacterized protein conserved in bacteria
    24    14 Tu  1   1/0.944   -    CDS      29458 -     30363    985  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
                               -    Prom     30388 -     30447    1.7 
                               -    Term     30402 -     30447   13.5 
    25    15 Tu  1   4/0.389   -    CDS      30456 -     32636   2855  ## COG0376 Catalase (peroxidase I)
                               -    Prom     32779 -     32838    5.8 
                               -    Term     32839 -     32893   10.1 
    26    16 Tu  1     .       -    CDS      32965 -     33855   1025  ## COG0685 5,10-methylenetetrahydrofolate reductase
                               -    Prom     34006 -     34065    6.0 
                               -    Term     34019 -     34053    2.2 
    27    17 Op  1   5/0.333   -    CDS      34204 -     36636   2804  ## COG0527 Aspartokinases
    28    17 Op  2     .       -    CDS      36639 -     37799   1220  ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases
                               -    Prom     37836 -     37895    4.8 
                               +    Prom     37882 -     37941    7.3 
    29    18 Tu  1     .       +    CDS      38076 -     38393    429  ## COG3060 Transcriptional regulator of met regulon
                               +    Prom     38440 -     38499    2.4 
    30    19 Tu  1     .       +    CDS      38577 -     39185    587  ## JW3908 predicted peptidoglycan peptidase
                               +    Term     39213 -     39238   -0.5 
                               -    Term     39185 -     39238    5.7 
    31    20 Tu  1     .       -    CDS      39246 -     39458    384  ## PROTEIN SUPPORTED gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31
                               -    Prom     39519 -     39578    5.2 
                               +    Prom     39577 -     39636    2.8 
    32    21 Tu  1     .       +    CDS      39661 -     41859   2272  ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase
                               +    Prom     41867 -     41926    5.1 
    33    22 Op  1     .       +    CDS      42015 -     43040    905  ## COG1609 Transcriptional regulators
                               +    Prom     43043 -     43102    2.3 
    34    22 Op  2   7/0.167   +    CDS      43237 -     44091    582  ## COG3087 Cell division protein
                               +    Term     44129 -     44160    4.1 
                               +    Prom     44105 -     44164    1.7 
    35    23 Op  1  24/0.000   +    CDS      44184 -     44714    627  ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
    36    23 Op  2   6/0.278   +    CDS      44724 -     46055   1200  ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16
                               +    Term     46084 -     46117    2.9 
    37    24 Op  1   7/0.167   +    CDS      46122 -     47048    998  ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase
                               +    Prom     47056 -     47115    5.3 
    38    24 Op  2     .       +    CDS      47141 -     47626    555  ## COG0684 Demethylmenaquinone methyltransferase
                               +    Term     47630 -     47665    5.1 
                               -    Term     47621 -     47649    1.0 
    39    25 Tu  1     .       -    CDS      47711 -     47950    504  ## COG3074 Uncharacterized protein conserved in bacteria
                               +    Prom     48216 -     48275    5.3 
    40    26 Op  1  18/0.000   +    CDS      48381 -     49226    760  ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)
    41    26 Op  2   4/0.389   +    CDS      49249 -     50757   1946  ## COG0554 Glycerol kinase
    42    26 Op  3   4/0.389   +    CDS      50763 -     51902   1357  ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins
                               +    Term     51923 -     51958    5.1 
    43    27 Tu  1     .       +    CDS      51999 -     52745    885  ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
                               -    Term     52667 -     52719    4.6 
    44    28 Op  1   3/0.667   -    CDS      52750 -     53178    435  ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins
    45    28 Op  2   3/0.667   -    CDS      53205 -     53504    328  ## COG3691 Uncharacterized protein conserved in bacteria
                               -    Prom     53540 -     53599    3.3 
    46    29 Tu  1     .       -    CDS      53716 -     54156    468  ## COG3152 Predicted membrane protein
                               -    Prom     54180 -     54239    2.5 
                               +    Prom     54174 -     54233    5.8 
    47    30 Tu  1     .       +    CDS      54257 -     54856    549  ## EcolC_4098 hypothetical protein
                               +    Term     54908 -     54938    2.1 
    48    31 Tu  1     .       +    CDS      54964 -     55731    939  ## COG0149 Triosephosphate isomerase
                               +    Term     55741 -     55775    5.2 
    49    32 Tu  1     .       -    CDS      55786 -     56541    574  ## COG2134 CDP-diacylglycerol pyrophosphatase
                               -    Prom     56565 -     56624    4.8 
                               -    Term     56576 -     56638    1.8 
    50    33 Tu  1     .       -    CDS      56648 -     57637   1199  ## COG1613 ABC-type sulfate transport system, periplasmic component
                               -    Prom     57677 -     57736    6.2 
                               -    Term     57741 -     57773    2.3 
    51    34 Tu  1     .       -    CDS      57957 -     58919   1243  ## COG0205 6-phosphofructokinase
                               -    Prom     58999 -     59058    4.2 
                               -    Term     59005 -     59052    1.3 
    52    35 Tu  1     .       -    CDS      59100 -     60002    485  ## COG0053 Predicted Co/Zn/Cd cation transporters
                               -    Prom     60072 -     60131    5.1 
                               -    Term     60080 -     60110    4.3 
    53    36 Tu  1     .       -    CDS      60151 -     60651    265  ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
                               -    Prom     60678 -     60737    2.0 
                               +    Prom     60685 -     60744    2.1 
    54    37 Op  1  40/0.000   +    CDS      60801 -     61499    889  ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
    55    37 Op  2     .       +    CDS      61496 -     62869   1548  ## COG0642 Signal transduction histidine kinase
                               +    Term     62978 -     63013   -0.7 
                               -    Term     62883 -     62946    0.8 
    56    38 Tu  1     .       -    CDS      62975 -     63649    522  ## COG2258 Uncharacterized protein conserved in bacteria
                               -    Prom     63685 -     63744    3.7 
                               -    Term     63735 -     63779    8.0 
    57    39 Tu  1     .       -    CDS      63798 -     64787   1025  ## ECSE_4198 2-keto-3-deoxygluconate permease
                               -    Prom     64912 -     64971    7.3 
                               -    Term     64950 -     64986    6.4 
    58    40 Tu  1     .       -    CDS      65041 -     65661    571  ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent
                               -    Prom     65712 -     65771    7.2 
                               +    Prom     65715 -     65774    6.4 
    59    41 Tu  1     .       +    CDS      65946 -     66980   1296  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
    60    42 Tu  1     .       -    CDS      66977 -     67825    669  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Prom     67520 -     67579    2.9 
    61    43 Tu  1     .       +    CDS      67817 -     67951     95  ## 
                               +    Term     68009 -     68064    1.8 
    62    44 Tu  1     .       -    CDS      67899 -     68735    416  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               -    Prom     68792 -     68851    2.6 
                               +    Prom     68940 -     68999    2.4 
    63    45 Op  1   6/0.278   +    CDS      69023 -     70492   1327  ## COG1070 Sugar (pentulose and hexulose) kinases
    64    45 Op  2     .       +    CDS      70489 -     71748   1400  ## COG4806 L-rhamnose isomerase
Predicted protein(s)
>gi|223713506|gb|ACDM01000092.1| GENE     1       186  -      1043    734    285 aa, chain - ## HITS:1  COG:murI KEGG:ns NR:ns ## COG: murI COG0796 # Protein_GI_number: 16131805 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Escherichia coli K12 # 1     285       5     289     289     532   99.0  1e-151
MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPY
GEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKP
AARLTANGIVGLLATRGTIKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSL
DALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLE
HEAPDAKSADANIAFCMAMTPGAEQLLPVLQRYGFETLEKLAVLG
>gi|223713506|gb|ACDM01000092.1| GENE     2       988  -      2832   1777    614 aa, chain - ## HITS:1  COG:btuB KEGG:ns NR:ns ## COG: btuB COG4206 # Protein_GI_number: 16131804 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Escherichia coli K12 # 1     614       1     614     614    1158  100.0  0
MIKKASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST
SVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFP
IALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQL
GDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG
YGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPH
YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGI
YLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ
LYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKAR
IKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITY
QYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQ
TAGREYTLSGSYTF
>gi|223713506|gb|ACDM01000092.1| GENE     3      3201  -      4301   1231    366 aa, chain + ## HITS:1  COG:trmA KEGG:ns NR:ns ## COG: trmA COG2265 # Protein_GI_number: 16131803 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1     366       1     366     366     738  100.0  0
MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY
HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV
SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI
YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP
PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG
VLLTAK
>gi|223713506|gb|ACDM01000092.1| GENE     4      4341  -      4700    411    119 aa, chain - ## HITS:1  COG:no KEGG:LF82_3412 NR:ns ## KEGG: LF82_3412 # Name: yijD # Def: inner membrane protein YijD # Organism: E.coli_LF82 # Pathway: not_defined # 1     119       1     119     119     222  100.0  4e-57
MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
>gi|223713506|gb|ACDM01000092.1| GENE     5      4700  -      5404    667    234 aa, chain - ## HITS:1  COG:ECs4894 KEGG:ns NR:ns ## COG: ECs4894 COG1309 # Protein_GI_number: 15834148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     234       1     234     234     409  100.0  1e-114
MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREA
GIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIV
FSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
>gi|223713506|gb|ACDM01000092.1| GENE     6      5681  -      7081    431    466 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 7     453       4     443     458 170  26 2e-41
MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAV
SRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFV
DEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVL
IYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY
EKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQ
TAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVG
KTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI
IHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAALNGLNRLF
>gi|223713506|gb|ACDM01000092.1| GENE     7      7064  -      7981    929    305 aa, chain - ## HITS:1  COG:ECs4890 KEGG:ns NR:ns ## COG: ECs4890 COG0583 # Protein_GI_number: 15834144 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     305       1     305     305     596  100.0  1e-170
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA
GMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL
EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPLFDEPMLLAIYEDHPWANREC
VPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
PALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKV
LKQAV
>gi|223713506|gb|ACDM01000092.1| GENE     8      8248  -      9621   1845    457 aa, chain - ## HITS:1  COG:argH KEGG:ns NR:ns ## COG: argH COG0165 # Protein_GI_number: 16131798 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Escherichia coli K12 # 1     457       1     457     457     887  100.0  0
MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE
ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW
CKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE
SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS
AAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ
GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA
QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDED
VYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG
>gi|223713506|gb|ACDM01000092.1| GENE     9      9682  -     10455   1053    257 aa, chain - ## HITS:1  COG:ECs4888 KEGG:ns NR:ns ## COG: ECs4888 COG0548 # Protein_GI_number: 15834142 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1     257       2     258     258     453  100.0  1e-127
MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK
KNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGH
VGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSD
VSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE
QLPALFNGMPMGTRILA
>gi|223713506|gb|ACDM01000092.1| GENE    10     10466  -     11470    919    334 aa, chain - ## HITS:1  COG:argC KEGG:ns NR:ns ## COG: argC COG0002 # Protein_GI_number: 16131796 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Escherichia coli K12 # 1     334       1     334     334     656  100.0  0
MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPL
QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF
THQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVI
NATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGADVIFTPHLGNFPRGIL
ETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL
IIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
>gi|223713506|gb|ACDM01000092.1| GENE    11     11624  -     12775   1028    383 aa, chain + ## HITS:1  COG:argE KEGG:ns NR:ns ## COG: argE COG0624 # Protein_GI_number: 16131795 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1     383       1     383     383     800  100.0  0
MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRN
KFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFI
LDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHK
GHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLN
LGHIHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHP
PIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTLCPTLVLGPGSINQAHQPDEY
LETRFIKPTRELITQVIHHFCWH
>gi|223713506|gb|ACDM01000092.1| GENE    12     13412  -     16024   3129    870 aa, chain + ## HITS:1  COG:ppc KEGG:ns NR:ns ## COG: ppc COG2352 # Protein_GI_number: 16131794 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Escherichia coli K12 # 1     870      14     883     883    1701  100.0  0
MLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVAR
AFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLEL
VLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRK
LRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDR
DGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYR
YLMKNLRSRLMATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIAN
GDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRE
LNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEA
GIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAA
SWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQ
GEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVR
ENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLG
AGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWP
LGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQA
EKEGQEPDPRVEQALMVTIAGIAAGMRNTG
>gi|223713506|gb|ACDM01000092.1| GENE    13     16206  -     17939   1991    577 aa, chain + ## HITS:1  COG:yijP KEGG:ns NR:ns ## COG: yijP COG2194 # Protein_GI_number: 16131793 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1     577       1     577     577    1149  100.0  0
MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTNGIRDSLLFSSLWLIPV
FLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYF
SLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALLYGLILHPIAMNTFIKNKPFE
KTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNENNALPPLANFKDESGNEPRTLV
LVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLTVFNNVVTSRPYTIEILQQALTFAN
EKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQS
AREYDTNVLKPFQEVLNDPAPKKLIIVHLLGTHIKYKYRYPENQGKFDGNTDHVPPGLNA
EELESYNDYDNANLYNDHVVASLIKDFKAANPNGFLVYFSDHGEEVYDTPPHKTQGRNED
NPTRHMYTIPFLLWTSEKWQATHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDGYDPTRS
VVNPQFKETTRWIGNPYKKNALIDYDTLPYGDQVGNQ
>gi|223713506|gb|ACDM01000092.1| GENE    14     18154  -     19005    758    283 aa, chain + ## HITS:1  COG:yijO KEGG:ns NR:ns ## COG: yijO COG2207 # Protein_GI_number: 16131792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     283       1     283     283     551  100.0  1e-157
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATL
VPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
RYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>gi|223713506|gb|ACDM01000092.1| GENE    15     18992  -     19333    301    113 aa, chain - ## HITS:1  COG:frwD KEGG:ns NR:ns ## COG: frwD COG1445 # Protein_GI_number: 16131791 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Escherichia coli K12 # 1     113       1     113     113     207  100.0  3e-54
MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVA
LLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE
>gi|223713506|gb|ACDM01000092.1| GENE    16     19335  -     20213    571    292 aa, chain - ## HITS:1  COG:pflC KEGG:ns NR:ns ## COG: pflC COG1180 # Protein_GI_number: 16131790 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1     292       1     292     292     600  100.0  1e-172
MTSSAGQRISCNVVETRRDDVARIFNIQRYSLNDGEGIRTVVFFKGCPHLCPWCANPESI
SGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGG
VTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMD
ATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLNIRQ
IHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGLQVTVGG
>gi|223713506|gb|ACDM01000092.1| GENE    17     20179  -     22476   2311    765 aa, chain - ## HITS:1  COG:pflD KEGG:ns NR:ns ## COG: pflD COG1882 # Protein_GI_number: 16131789 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1     765       1     765     765    1553  100.0  0
MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRAKATAYILEHVEISIRD
EELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFAISEEDKRIYREELFPYWE
KRSMKDFINGQMTDEVKAATNTQIFSINQTDKGQGHIIIDYPRLLNHGLGELVAQMQQHC
QQQPENHFYQAALLLLEASQKHILRYAELAETMAANCTDAQRREELLTIAEISRHNAQHK
PQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYMLPFYQTSLTQGEDAAFLKELLESL
WVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLTENGRSAVNVLSFLCLDAYQSVQLPQP
NLGVRTNALIDTPFLMKTAETIRFGTGIPQIFNDEVVVPAFLNRGVSLEDARDYSVVGCV
ELSIPGRTYGLHDIAMFNLLKVMEICLHENEGNAALTYEGLLEQIRAKISHYITLMVEGS
NICDIGHRDWAPVPLLSSFISDCLEKGRDITDGGARYNFSGVQGIGIANLSDSLHALKGM
VFEQQRLSFDELLSVLKANFATPEGEKVRARLINRFEKYGNDIDEVDNISAELLRHYCKE
VEKYQNPRGGYFTPGSYTVSAHVPLGSVVGATPDGRFAGEQLADGGLSPMLGQDAQGPTA
VLKSVSKLDNTLLSNGTLLNVKFTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNAD
TLREAQQRPQDYAGLVVRVAGYSAFFVELSKEIQDDIIRRTAHQL
>gi|223713506|gb|ACDM01000092.1| GENE    18     22527  -     22847    551    106 aa, chain - ## HITS:1  COG:STM4113 KEGG:ns NR:ns ## COG: STM4113 COG1445 # Protein_GI_number: 16767378 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Salmonella typhimurium LT2 # 1     106       1     106     106     162   96.0  2e-40
MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMV
ILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA
>gi|223713506|gb|ACDM01000092.1| GENE    19     22862  -     23941   1331    359 aa, chain - ## HITS:1  COG:frwC KEGG:ns NR:ns ## COG: frwC COG1299 # Protein_GI_number: 16131787 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 1     359       1     359     359     566  100.0  1e-161
MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGAVPDAVADPNLKKLFDI
GVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAGFFGALIAGIIGGIVVHYL
KKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGALTNSLTQWLQGMQQGSIVML
AVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAIAAVGICIPPLGMGLATLIGRKN
FSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTAALVGAQCYAG
WGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVLKSLARKNGSSTDEKEDDLDLDFEIN
>gi|223713506|gb|ACDM01000092.1| GENE    20     24250  -     26751   2664    833 aa, chain + ## HITS:1  COG:ptsA_1 KEGG:ns NR:ns ## COG: ptsA_1 COG1080 # Protein_GI_number: 16131785 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 123     687       1     565     565    1100   99.0  0
MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRKGNAKSALALIGTDTLA
GDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDELEPLPVSLTNLNPQIIRA
RTVCSGSAGGILTPISSLDLNALGNLPAAKGVDAEQSALENGLTLVLKNIEFRLLDSDGA
TSAILEAHRSLAGDTSLREHLLAGVSAGLSCAEAIVASANHFCEEFSRSSSSYLQERALD
VRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELTPSQFLELDKNHLKGLLLKSGGTTS
HTVILARSFNIPTLVGVDIDALTPWQQQTIYIDGNAGAIVVEPGEAVARYYQQEARVQDA
LREQQRVWLTQQARTADGIRIEIAANIAHSVEAQAAFGNGAEGVGLFRTEMLYMDRTSAP
GESELYNIFCQALESANGRSIIVRTMDIGGDKPVDYLNIPAEANPFLGYRAVRIYEEYAS
LFTTQLRSILRASAHGSLKIMIPMISSMEEILWVKEKLAEAKQQLRNEHIPFDEKIQLGI
MLEVPSVMFIIDQCCEEIDFFSIGSNDLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYA
VQAVHRQGKWIGLCGELGAKGSVLPLLVGLGLDELSMSAPSIPAAKARMAQLDSRECRKL
LNQAMACRTSLEVEHLLAQFRMTQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGR
CRYPRKLEADLWAREAVFSTGLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFI
IMLTLNKHAAGDQHMRIFSRLARRIMHEEFRNALVNAASADAIASLLQHELEL
>gi|223713506|gb|ACDM01000092.1| GENE    21     26763  -     27425    860    220 aa, chain + ## HITS:1  COG:talC KEGG:ns NR:ns ## COG: talC COG0176 # Protein_GI_number: 16131784 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli K12 # 1     220       1     220     220     389  100.0  1e-108
MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGDEGILFAQT
MSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKILKKEGITTLGTAVYSAAQGLLA
ALAGAKYVAPYVNRVDAQGGDGIRTVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAG
CESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTTHL
>gi|223713506|gb|ACDM01000092.1| GENE    22     27436  -     28539   1286    367 aa, chain + ## HITS:1  COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1     367      14     380     380     702  100.0  0
MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVE
IAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIAST
DAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEAR
ACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYL
SGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALS
HAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQ
RFLQEWE
>gi|223713506|gb|ACDM01000092.1| GENE    23     28814  -     29431    538    205 aa, chain + ## HITS:1  COG:ECs4873 KEGG:ns NR:ns ## COG: ECs4873 COG3738 # Protein_GI_number: 15834127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     205       1     205     205     413   96.0  1e-115
MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGARQQIGSTLFYDPAYVQL
TYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFAEYPQKWKLKRPDSNIDHR
RVPNLETWFSRHDKTRPTSKNPSDYQAGDIVSWRLDNGLAHIGVVSDGFARDGTPLVIHN
IGAGAQEEDVLFNWRMVGHYRYFVK
>gi|223713506|gb|ACDM01000092.1| GENE    24     29458  -     30363    985    301 aa, chain - ## HITS:1  COG:yijE KEGG:ns NR:ns ## COG: yijE COG0697 # Protein_GI_number: 16131781 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1     301      12     312     312     489  100.0  1e-138
MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLR
GRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGE
RLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPR
VDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLK
NLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKR
I
>gi|223713506|gb|ACDM01000092.1| GENE    25     30456  -     32636   2855    726 aa, chain - ## HITS:1  COG:katG KEGG:ns NR:ns ## COG: katG COG0376 # Protein_GI_number: 16131780 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase (peroxidase I) # Organism: Escherichia coli K12 # 1     726       1     726     726    1427  100.0  0
MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVDLLNQHSNRSNPLGEDF
DYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGA
GRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFG
FGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLS
AAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWAST
YGSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIP
DPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKS
RYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRG
GDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLADIIVLAGVVGVEKA
ASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARLDVSTTESLLIDKAQ
QLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESK
ELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNL
DRFDLL
>gi|223713506|gb|ACDM01000092.1| GENE    26     32965  -     33855   1025    296 aa, chain - ## HITS:1  COG:metF KEGG:ns NR:ns ## COG: metF COG0685 # Protein_GI_number: 16131779 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Escherichia coli K12 # 1     296       1     296     296     611  100.0  1e-175
MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY
GANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD
LPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRA
ITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFD
GLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPGL
>gi|223713506|gb|ACDM01000092.1| GENE    27     34204  -     36636   2804    810 aa, chain - ## HITS:1  COG:metL_1 KEGG:ns NR:ns ## COG: metL_1 COG0527 # Protein_GI_number: 16131778 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1     448       1     448     448     881  100.0  0
MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDMMVVSAAGSTTNQLINW
LKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAFVSDLERLAALLDSGINDA
VYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAERAAQPQVDEGLSYPLLQQLL
VQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADP
RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIER
VLASGTGARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLL
QFCYTSEVADSALKILDEAGLPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQPV
EFTWQSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNIGSRWLELFARE
QSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEESLFLWMRAHPY
DDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQIHDAFEKTGRHWLYN
ATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLT
EPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNE
QMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRD
NPLVIRGPGAGRDVTAGAIQSDINRLAQLL
>gi|223713506|gb|ACDM01000092.1| GENE    28     36639  -     37799   1220    386 aa, chain - ## HITS:1  COG:metB KEGG:ns NR:ns ## COG: metB COG0626 # Protein_GI_number: 16131777 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1     386       1     386     386     773  100.0  0
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRA
LAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL
FVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA
LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYL
LLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML
SFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLL
RISTGIEDGEDLIADLENGFRAANKG
>gi|223713506|gb|ACDM01000092.1| GENE    29     38076  -     38393    429    105 aa, chain + ## HITS:1  COG:ECs4867 KEGG:ns NR:ns ## COG: ECs4867 COG3060 # Protein_GI_number: 15834121 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of met regulon # Organism: Escherichia coli O157:H7 # 1     105       1     105     105     198  100.0  2e-51
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE
AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY
>gi|223713506|gb|ACDM01000092.1| GENE    30     38577  -     39185    587    202 aa, chain + ## HITS:1  COG:no KEGG:JW3908 NR:ns ## KEGG: JW3908 # Name: yiiX # Def: predicted peptidoglycan peptidase # Organism: E.coli_J # Pathway: not_defined # 1     202       1     202     202     365  100.0  1e-100
MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATHTDYSHTGMLVIRNKKP
YVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYDFSFS
WSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSSPQVQAKLKERYGKNIPLEETVVS
PQAVFDAPQLTTVAKEWPLFSW
>gi|223713506|gb|ACDM01000092.1| GENE    31     39246  -     39458    384     70 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31 [Escherichia coli O157:H7 EDL933] # 1      70       1      70      70 152  100 5e-36
MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRF
NKRFNIPGSK
>gi|223713506|gb|ACDM01000092.1| GENE    32     39661  -     41859   2272    732 aa, chain + ## HITS:1  COG:priA KEGG:ns NR:ns ## COG: priA COG1198 # Protein_GI_number: 16131773 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Escherichia coli K12 # 1     732       1     732     732    1477  100.0  0
MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDASELPLNEL
KAVVEVLDSEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFA
TEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEFNDAALQALRKKGLCDLASET
PEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLEN
VLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIV
IGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPA
LETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQ
VILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCG
STHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQ
MLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHH
PEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLI
LSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIINGTLALINTIPDSRK
VKWVLDVDPIEG
>gi|223713506|gb|ACDM01000092.1| GENE    33     42015  -     43040    905    341 aa, chain + ## HITS:1  COG:ECs4861 KEGG:ns NR:ns ## COG: ECs4861 COG1609 # Protein_GI_number: 15834115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     341       1     341     341     687  100.0  0
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGR
NVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLII
TKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAVNYLY
EQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR
YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP
>gi|223713506|gb|ACDM01000092.1| GENE    34     43237  -     44091    582    284 aa, chain + ## HITS:1  COG:ECs4860 KEGG:ns NR:ns ## COG: ECs4860 COG3087 # Protein_GI_number: 15834114 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli O157:H7 # 1     284      36     319     319     388   99.0  1e-108
MVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPG
VRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQR
QRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPA
HTTAQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDS
KITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG
>gi|223713506|gb|ACDM01000092.1| GENE    35     44184  -     44714    627    176 aa, chain + ## HITS:1  COG:ECs4859 KEGG:ns NR:ns ## COG: ECs4859 COG5405 # Protein_GI_number: 15834113 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Escherichia coli O157:H7 # 1     176       1     176     176     332  100.0  3e-91
MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFEL
FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL
IAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
>gi|223713506|gb|ACDM01000092.1| GENE    36     44724  -     46055   1200    443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4     443       8     466     466 466  51 1e-130
MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTG
VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR
YRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAA
PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK
QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD
HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA
TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI
DADYVSKHLDALVADEDLSRFIL
>gi|223713506|gb|ACDM01000092.1| GENE    37     46122  -     47048    998    308 aa, chain + ## HITS:1  COG:menA KEGG:ns NR:ns ## COG: menA COG1575 # Protein_GI_number: 16131768 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Escherichia coli K12 # 1     308       1     308     308     570   99.0  1e-163
MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPLVALLALITAGLLQILS
NLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIITVVLICLSGLALVAVACHT
LADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLIP
ALILPATACGLLATAVLNINNLRDINSDRENGKNTLVVRLGEVNARRYHACLLMGSLVCL
ALFNLFSLHSLWGWLFLLAAPLLMKQARYVMREMDPVAMRPMLERTVKGALLTNLLFVLG
IFLSQWAA
>gi|223713506|gb|ACDM01000092.1| GENE    38     47141  -     47626    555    161 aa, chain + ## HITS:1  COG:ECs4856 KEGG:ns NR:ns ## COG: ECs4856 COG0684 # Protein_GI_number: 15834110 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Escherichia coli O157:H7 # 1     161       1     161     161     299  100.0  1e-81
MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRV
LVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAA
GEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE
>gi|223713506|gb|ACDM01000092.1| GENE    39     47711  -     47950    504     79 aa, chain - ## HITS:1  COG:ECs4853 KEGG:ns NR:ns ## COG: ECs4853 COG3074 # Protein_GI_number: 15834107 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      79       3      81      81      85  100.0  2e-17
MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE
QQNGWQERLQALLGRMEEV
>gi|223713506|gb|ACDM01000092.1| GENE    40     48381  -     49226    760    281 aa, chain + ## HITS:1  COG:ECs4852 KEGG:ns NR:ns ## COG: ECs4852 COG0580 # Protein_GI_number: 15834106 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Escherichia coli O157:H7 # 1     281       1     281     281     533  100.0  1e-151
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTA
GVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHH
IVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAP
LLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP
IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL
>gi|223713506|gb|ACDM01000092.1| GENE    41     49249  -     50757   1946    502 aa, chain + ## HITS:1  COG:ECs4851 KEGG:ns NR:ns ## COG: ECs4851 COG0554 # Protein_GI_number: 15834105 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Escherichia coli O157:H7 # 1     502       1     502     502    1023  100.0  0
MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSST
LVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDG
LEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVH
VTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPI
SGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVN
YALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPY
ARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLM
QFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTER
NYRYAGWKKAVKRAMAWEEHDE
>gi|223713506|gb|ACDM01000092.1| GENE    42     50763  -     51902   1357    379 aa, chain + ## HITS:1  COG:glpX KEGG:ns NR:ns ## COG: glpX COG1494 # Protein_GI_number: 16131763 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Escherichia coli K12 # 44     379       1     336     336     634  100.0  0
MPNEAFMPHPVVPKRAGATPHTSIIPPFPCATLRAIPYCLEFAMRRELAIEFSRVTESAA
LAGYKWLGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRG
DAVDIAVDPIEGTRMTAMGQANALAVLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNL
PLADNLRNVAAALGKPLSELTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCM
PDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCK
AMGIEAGKVLRLGDMARSDNVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRR
IQSIHYLDRKDPEMQVHIL
>gi|223713506|gb|ACDM01000092.1| GENE    43     51999  -     52745    885    248 aa, chain + ## HITS:1  COG:fpr KEGG:ns NR:ns ## COG: fpr COG1018 # Protein_GI_number: 16131762 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1     248       1     248     248     505  100.0  1e-143
MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN
PDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGP
YLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS
LTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPG
HMTAEHYW
>gi|223713506|gb|ACDM01000092.1| GENE    44     52750  -     53178    435    142 aa, chain - ## HITS:1  COG:yiiT KEGG:ns NR:ns ## COG: yiiT COG0589 # Protein_GI_number: 16131761 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1     142       1     142     142     280  100.0  4e-76
MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQ
LLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM
PAYRGMINKMSADLLIVPFIDK
>gi|223713506|gb|ACDM01000092.1| GENE    45     53205  -     53504    328     99 aa, chain - ## HITS:1  COG:yiiS KEGG:ns NR:ns ## COG: yiiS COG3691 # Protein_GI_number: 16131760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      99       1      99      99     161  100.0  3e-40
MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAATSSADEG
ASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
>gi|223713506|gb|ACDM01000092.1| GENE    46     53716  -     54156    468    146 aa, chain - ## HITS:1  COG:ECs4846 KEGG:ns NR:ns ## COG: ECs4846 COG3152 # Protein_GI_number: 15834100 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     146       1     146     146     260  100.0  6e-70
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
VGTQGENKYGKDTQDVKYKADNKSSN
>gi|223713506|gb|ACDM01000092.1| GENE    47     54257  -     54856    549    199 aa, chain + ## HITS:1  COG:no KEGG:EcolC_4098 NR:ns ## KEGG: EcolC_4098 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     199       1     199     199     350  100.0  2e-95
MKPGCTLFFLLCSALTVTTAAHAQTPDTATTAPYLLAGAPTFDLSISQFREDFNSQNPSL
PLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIKSIQMTWLPIQGPEQKAAK
AKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYYTETEGALRYVVADNGEKGLT
FAVEPIKLALSESLEGLNK
>gi|223713506|gb|ACDM01000092.1| GENE    48     54964  -     55731    939    255 aa, chain + ## HITS:1  COG:ECs4844 KEGG:ns NR:ns ## COG: ECs4844 COG0149 # Protein_GI_number: 15834098 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Escherichia coli O157:H7 # 1     255       1     255     255     454  100.0  1e-128
MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM
LGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG
LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP
AQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD
AFAVIVKAAEAAKQA
>gi|223713506|gb|ACDM01000092.1| GENE    49     55786  -     56541    574    251 aa, chain - ## HITS:1  COG:cdh KEGG:ns NR:ns ## COG: cdh COG2134 # Protein_GI_number: 16131756 # Func_class: I Lipid transport and metabolism # Function: CDP-diacylglycerol pyrophosphatase # Organism: Escherichia coli K12 # 1     251       1     251     251     515  100.0  1e-146
MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLPNQQQNQNPSPCAEVKP
NAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVP
DRAVSLAINSRTGRTQNHFHIHISCIRPDVRKQLDNNLANISSRWLPLPGGLRGHEYLAR
RVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQSDNSFVLLATQRNLLTLNRASAE
EIQDHQCEILR
>gi|223713506|gb|ACDM01000092.1| GENE    50     56648  -     57637   1199    329 aa, chain - ## HITS:1  COG:sbp KEGG:ns NR:ns ## COG: sbp COG1613 # Protein_GI_number: 16131755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 1     329       1     329     329     649  100.0  0
MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQS
HGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLV
RKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRA
LYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEP
TVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLF
TIDEEFGGWTKAQKEHFANGGTFDQISKR
>gi|223713506|gb|ACDM01000092.1| GENE    51     57957  -     58919   1243    320 aa, chain - ## HITS:1  COG:ECs4841 KEGG:ns NR:ns ## COG: ECs4841 COG0205 # Protein_GI_number: 15834095 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Escherichia coli O157:H7 # 1     320       1     320     320     634  100.0  0
MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSD
MINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPC
IGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLA
AAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETG
RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDA
IENMKRPFKGDWLDCAKKLY
>gi|223713506|gb|ACDM01000092.1| GENE    52     59100  -     60002    485    300 aa, chain - ## HITS:1  COG:ECs4840 KEGG:ns NR:ns ## COG: ECs4840 COG0053 # Protein_GI_number: 15834094 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Escherichia coli O157:H7 # 1     300       1     300     300     558  100.0  1e-159
MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVV
RYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIV
TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADA
LFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG
PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSVVPREGKRSMLS
>gi|223713506|gb|ACDM01000092.1| GENE    53     60151  -     60651    265    166 aa, chain - ## HITS:1  COG:ECs4839 KEGG:ns NR:ns ## COG: ECs4839 COG3678 # Protein_GI_number: 15834093 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli O157:H7 # 1     151       2     152     167     211  100.0  5e-55
MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMR
DLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQM
YRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSSSNSRSQ
>gi|223713506|gb|ACDM01000092.1| GENE    54     60801  -     61499    889    232 aa, chain + ## HITS:1  COG:ECs4838 KEGG:ns NR:ns ## COG: ECs4838 COG0745 # Protein_GI_number: 15834092 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1     232       1     232     232     410  100.0  1e-114
MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI
DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW
SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH
LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
>gi|223713506|gb|ACDM01000092.1| GENE    55     61496  -     62869   1548    457 aa, chain + ## HITS:1  COG:ECs4837 KEGG:ns NR:ns ## COG: ECs4837 COG0642 # Protein_GI_number: 15834091 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1     457       1     457     457     816  100.0  0
MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELAND
PPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQK
KKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLL
WLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQ
RLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQK
NALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRN
ALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLG
LAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS
>gi|223713506|gb|ACDM01000092.1| GENE    56     62975  -     63649    522    224 aa, chain - ## HITS:1  COG:yiiM KEGG:ns NR:ns ## COG: yiiM COG2258 # Protein_GI_number: 16131750 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     224      11     234     234     462  100.0  1e-130
MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVHGGPDRALCHY
PREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPC
YKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWH
MPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
>gi|223713506|gb|ACDM01000092.1| GENE    57     63798  -     64787   1025    329 aa, chain - ## HITS:1  COG:no KEGG:ECSE_4198 NR:ns ## KEGG: ECSE_4198 # Name: not_defined # Def: 2-keto-3-deoxygluconate permease # Organism: E.coli_SE11 # Pathway: not_defined # 1     329      13     341     341     500   99.0  1e-140
MEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCM
GASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAM
DMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPF
LVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTG
IPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVT
SILVPILTSIWSRKVKARAAKIEILGTVK
>gi|223713506|gb|ACDM01000092.1| GENE    58     65041  -     65661    571    206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1     206       1     201     201 224  53 1e-57
MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITK
LDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKA
AASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQN
RRPDYIKEFWNVVNWDEAAARFAAKK
>gi|223713506|gb|ACDM01000092.1| GENE    59     65946  -     66980   1296    344 aa, chain + ## HITS:1  COG:rhaT KEGG:ns NR:ns ## COG: rhaT COG0697 # Protein_GI_number: 16131747 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1     344       1     344     344     606   99.0  1e-173
MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPN
FWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPI
INGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVM
CGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVK
DLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYV
LCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
>gi|223713506|gb|ACDM01000092.1| GENE    60     66977  -     67825    669    282 aa, chain - ## HITS:1  COG:rhaR KEGG:ns NR:ns ## COG: rhaR COG2207 # Protein_GI_number: 16131746 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     282      31     312     312     578   99.0  1e-165
MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRI
TRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWRLGS
MGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDK
LITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHS
RLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD
>gi|223713506|gb|ACDM01000092.1| GENE    61     67817  -     67951     95     44 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MRHRGYLGQRTKLIIRNMAYKYVEKIRVIAESHPVPGEYHAVTS
>gi|223713506|gb|ACDM01000092.1| GENE    62     67899  -     68735    416    278 aa, chain - ## HITS:1  COG:rhaS KEGG:ns NR:ns ## COG: rhaS COG2207 # Protein_GI_number: 16131745 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1     278       1     278     278     527   99.0  1e-150
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGG
TVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSV
LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLCKSSLQENLENSASRLNLLLAWL
EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
DIAYRYGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
>gi|223713506|gb|ACDM01000092.1| GENE    63     69023  -     70492   1327    489 aa, chain + ## HITS:1  COG:rhaB KEGG:ns NR:ns ## COG: rhaB COG1070 # Protein_GI_number: 16131744 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1     489       1     489     489    1009   99.0  0
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTRDVDSLESAI
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGK
RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
WLLQRVLQEQQINDLPALISATQALPACRFIINPNDDRFINPETMCSEIQAACRETAQPI
PESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR
VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
TRQTKELCA
>gi|223713506|gb|ACDM01000092.1| GENE    64     70489  -     71748   1400    419 aa, chain + ## HITS:1  COG:rhaA KEGG:ns NR:ns ## COG: rhaA COG4806 # Protein_GI_number: 16131743 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Escherichia coli K12 # 1     419       1     419     419     856   99.0  0
MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQ
ATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE
WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS
VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL
LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL
RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRRG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:35:14 2011
 Seq name: gi|223713505|gb|ACDM01000093.1| Escherichia sp. 4_1_40B cont1.93, whole genome shotgun sequence 
 Length of sequence - 53810 bp
 Number of predicted genes - 50, with homology - 48
 Number of transcription units - 27, operones - 13 average op.length -  2.8
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2   1/1.000   +    CDS        978 -      1292    401  ## COG3254 Uncharacterized conserved protein
                               +    Term      1301 -      1337    2.2 
                               +    Prom      1343 -      1402    5.1 
     3     2 Op  1   7/0.143   +    CDS       1593 -      2039    374  ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
     4     2 Op  2   2/0.857   +    CDS       2050 -      3501   1470  ## COG1299 Phosphotransferase system, fructose-specific IIC component
     5     2 Op  3   3/0.571   +    CDS       3491 -      4561   1107  ## COG1363 Cellulase M and related proteins
     6     2 Op  4     .       +    CDS       4561 -      6309   1045  ## COG3711 Transcriptional antiterminator
                               +    Term      6313 -      6351    9.3 
     7     3 Tu  1     .       -    CDS       6359 -      7414    947  ## B21_03730 hypothetical protein
                               -    Prom      7497 -      7556    7.4 
                               -    Term      7512 -      7560    4.1 
     8     4 Tu  1     .       -    CDS       7567 -      8400    643  ## COG1526 Uncharacterized protein required for formate dehydrogenase activity
                               -    Prom      8545 -      8604    4.4 
                               +    Prom      8318 -      8377    4.2 
     9     5 Op  1   5/0.286   +    CDS       8594 -      9181    510  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    10     5 Op  2  16/0.000   +    CDS       9230 -     11644   2854  ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing
    11     5 Op  3  12/0.000   +    CDS      11657 -     12559    886  ## COG0437 Fe-S-cluster-containing hydrogenase components 1
    12     5 Op  4   9/0.000   +    CDS      12556 -     13191    536  ## COG2864 Cytochrome b subunit of formate dehydrogenase
    13     5 Op  5     .       +    CDS      13188 -     14117    970  ## COG3058 Uncharacterized protein involved in formate dehydrogenase formation
                               -    Term     14285 -     14323    4.4 
    14     6 Op  1     .       -    CDS      14447 -     14689    142  ## SSON_4059 hypothetical protein
                               -    Prom     14817 -     14876    4.8 
    15     6 Op  2     .       -    CDS      14907 -     15125    128  ## SFV_3606 hypothetical protein
                               -    Prom     15300 -     15359    8.5 
                               -    Term     15421 -     15456    3.3 
    16     7 Tu  1     .       -    CDS      15460 -     15567     68  ## 
                               -    Prom     15596 -     15655    3.0 
                               -    Term     15928 -     15977    5.1 
    17     8 Op  1   5/0.286   -    CDS      15978 -     16919   1125  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
    18     8 Op  2   7/0.143   -    CDS      16964 -     17401    407  ## COG1490 D-Tyr-tRNAtyr deacylase
    19     8 Op  3   2/0.857   -    CDS      17398 -     18270    792  ## COG1295 Predicted membrane protein
    20     8 Op  4   1/1.000   -    CDS      18264 -     18863    784  ## COG1011 Predicted hydrolase (HAD superfamily)
                               -    Prom     18887 -     18946    2.1 
    21     9 Op  1   3/0.571   -    CDS      18962 -     19747    548  ## COG1349 Transcriptional regulators of sugar metabolism
    22     9 Op  2     .       -    CDS      19781 -     20677    564  ## COG0524 Sugar kinases, ribokinase family
                               -    Prom     20702 -     20761    4.1 
    23    10 Op  1   4/0.429   +    CDS      20845 -     21741    980  ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
    24    10 Op  2   3/0.571   +    CDS      21765 -     22643   1017  ## COG3684 Tagatose-1,6-bisphosphate aldolase
    25    10 Op  3   2/0.857   +    CDS      22660 -     23901   1261  ## COG2942 N-acyl-D-glucosamine 2-epimerase
                               +    Term     23991 -     24032    7.4 
    26    11 Tu  1     .       +    CDS      24039 -     24941    597  ## COG2017 Galactose mutarotase and related enzymes
                               +    Term     25038 -     25085   -0.7 
                               +    Prom     24996 -     25055    6.5 
    27    12 Op  1   3/0.571   +    CDS      25140 -     27176   2003  ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases
    28    12 Op  2   3/0.571   +    CDS      27222 -     28607   1587  ## COG2211 Na+/melibiose symporter and related transporters
    29    12 Op  3     .       +    CDS      28650 -     30053   1065  ## COG2211 Na+/melibiose symporter and related transporters
    30    12 Op  4     .       +    CDS      30121 -     30813    525  ## JW3846 predicted outer membrane porin L
                               +    Term     30875 -     30911    4.8 
                               -    Term     30810 -     30852    3.5 
    31    13 Tu  1     .       -    CDS      30904 -     32169   1011  ## COG0477 Permeases of the major facilitator superfamily
                               -    Prom     32207 -     32266    2.3 
    32    14 Op  1     .       -    CDS      32271 -     33251    775  ## JW3844 predicted sugar phosphate isomerase
    33    14 Op  2   2/0.857   -    CDS      33259 -     33969    572  ## COG2188 Transcriptional regulators
                               -    Prom     34098 -     34157    7.3 
                               -    Term     34133 -     34162    2.1 
    34    15 Tu  1     .       -    CDS      34186 -     36009   2287  ## COG1217 Predicted membrane GTPase involved in stress response
                               -    Prom     36244 -     36303    5.8 
    35    16 Tu  1   5/0.286   +    CDS      36382 -     37791   1660  ## COG0174 Glutamine synthetase
                               +    Term     37965 -     37994   -0.3 
                               +    Prom     37987 -     38046    5.2 
    36    17 Op  1  14/0.000   +    CDS      38077 -     39126   1088  ## COG3852 Signal transduction histidine kinase, nitrogen specific
    37    17 Op  2     .       +    CDS      39138 -     40547   1537  ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
                               +    Prom     40579 -     40638    2.9 
    38    18 Tu  1     .       +    CDS      40659 -     40769     88  ## 
                               -    Term     40806 -     40871   16.8 
    39    19 Op  1   2/0.857   -    CDS      40998 -     42371   1572  ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
                               -    Prom     42472 -     42531    2.1 
    40    19 Op  2     .       -    CDS      42560 -     43069    574  ## COG3078 Uncharacterized protein conserved in bacteria
                               -    Prom     43109 -     43168    3.9 
                               +    Prom     43453 -     43512    5.1 
    41    20 Tu  1     .       +    CDS      43687 -     44283    690  ## COG0218 Predicted GTPase
                               -    Term     44404 -     44441    9.4 
    42    21 Tu  1     .       -    CDS      44664 -     47450   3298  ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains
                               -    Prom     47680 -     47739    4.5 
    43    22 Tu  1     .       +    CDS      47509 -     47694     56  ## EcE24377A_4381 hypothetical protein
                               +    Term     47792 -     47820   -1.0 
                               +    Prom     47730 -     47789    4.5 
    44    23 Tu  1     .       +    CDS      47841 -     48746    598  ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase
                               +    Term     48750 -     48793   10.0 
    45    24 Tu  1   1/1.000   -    CDS      48787 -     50217   1056  ## COG5339 Uncharacterized protein conserved in bacteria
                               -    Prom     50311 -     50370   10.4 
                               -    Term     50312 -     50359    5.1 
    46    25 Op  1   5/0.286   -    CDS      50372 -     50998    820  ## COG0526 Thiol-disulfide isomerase and thioredoxins
    47    25 Op  2   5/0.286   -    CDS      51015 -     51953    631  ## COG2334 Putative homoserine kinase type II (protein kinase fold)
                               -    Prom     52010 -     52069    1.6 
    48    26 Tu  1     .       -    CDS      52078 -     52347    397  ## COG3084 Uncharacterized protein conserved in bacteria
                               -    Prom     52586 -     52645    1.9 
                               +    Prom     52333 -     52392    2.9 
    49    27 Op  1  11/0.000   +    CDS      52417 -     53001    398  ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A
    50    27 Op  2     .       +    CDS      52983 -     53510    460  ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein
                               +    Term     53521 -     53565    3.2 
Predicted protein(s)
>gi|223713505|gb|ACDM01000093.1| GENE     1       144  -       968    874    274 aa, chain + ## HITS:1  COG:rhaD KEGG:ns NR:ns ## COG: rhaD COG0235 # Protein_GI_number: 16131742 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1     274       1     274     274     573  100.0  1e-163
MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQ
PMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPA
HFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGV
GILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVK
VYSMGGMKQTISREELIALGKRFGVTPLASALAL
>gi|223713505|gb|ACDM01000093.1| GENE     2       978  -      1292    401    104 aa, chain + ## HITS:1  COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     104       1     104     104     199  100.0  8e-52
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIES
EERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQEVFYLP
>gi|223713505|gb|ACDM01000093.1| GENE     3      1593  -      2039    374    148 aa, chain + ## HITS:1  COG:frvA KEGG:ns NR:ns ## COG: frvA COG1762 # Protein_GI_number: 16131740 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1     148       1     148     148     292  100.0  2e-79
MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGV
AVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGVPQSGEEDQVKIIGTLCRK
IIHKEFIHQLQQGDTDQVLALLNQTLSS
>gi|223713505|gb|ACDM01000093.1| GENE     4      2050  -      3501   1470    483 aa, chain + ## HITS:1  COG:frvB_2 KEGG:ns NR:ns ## COG: frvB_2 COG1299 # Protein_GI_number: 16131739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 129     483       1     355     355     629  100.0  1e-180
MEPSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAA
DYVILATGRGLSGDDRARFAGKKVYEIAISQALKNIDQIFSELPTNSQLFAADSGVKLGK
QEVQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFGLPYTDMSKGAPSFTWVVESI
GYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLANDKALLGTQSGAGFLGAVVLGLAI
GYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTYYVIGPVMSDLMGGLLHFLNTIP
PSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSLLEKHIYDWYAIVGVVALMPPVAAGLA
TFIAPKLFTRQEKEAASSAIVVGATVATEPAIPYALAAPLPMITANTLAGGITGVLVIAF
GIKRLAPGLGIFDPLIGLMSPVGSFYLVLAIGLALNISFIIVLKGLWLRRKAKAAQQELV
HEH
>gi|223713505|gb|ACDM01000093.1| GENE     5      3491  -      4561   1107    356 aa, chain + ## HITS:1  COG:frvX KEGG:ns NR:ns ## COG: frvX COG1363 # Protein_GI_number: 16131738 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1     356       1     356     356     738  100.0  0
MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGSFVARKGNKGPKVAVVG
HMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTE
KQKQQPLSFDEMFIDIGANSREEVEKRGVEIGNFISPEANFACWGEDKVVGKALDNRIGC
AMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVIVLDTAVAGDVPGIDN
IKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMG
GGRPVVALCLPTRYLHANSGMISKADYEALLTLIRGFLTTLTAEKVNAFSQFRQVD
>gi|223713505|gb|ACDM01000093.1| GENE     6      4561  -      6309   1045    582 aa, chain + ## HITS:1  COG:frvR_1 KEGG:ns NR:ns ## COG: frvR_1 COG3711 # Protein_GI_number: 16131737 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli K12 # 1     463       1     463     463     910  100.0  0
MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFTLNGKARIFASGSAGYQ
LEIFERRSFFQLLQKHDNDDRLLALLLLNTFTPRAQLASALNLPETWVAERLPRLKQRYE
RTCCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLAGITRDNLQHLSTACDNQHRW
PLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIVEHSGLFLGDNAVRTLTGLIEKQ
HQQAQVISADNVQGLLQRVPGIASLNIIDAQLVENITGHLLRCLAAPVWIAEHRQSSMNN
LKAAWPAAFDMSLHFITLLREQLDIPLFDSDLIGLYFACALERHQNERQPIILLSDQNAI
ATINQLAIERDVLNCRVIIARSLSELVAIREEIEPLLIINNSHYLLDDAVNNYITVKNII
TAAGIEQIKHFLATAFIRQQPERFFSAPGSFHYSNVRGESWQHITRQICAQLVAQHHITA
DEAQRIIAREGEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPVEVNNEVINHVLIACA
AADARHELKIFSYLASILCQHPAEIIAGLTGYEAFMELLHKG
>gi|223713505|gb|ACDM01000093.1| GENE     7      6359  -      7414    947    351 aa, chain - ## HITS:1  COG:no KEGG:B21_03730 NR:ns ## KEGG: B21_03730 # Name: yiiG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     351       1     351     351     631  100.0  1e-179
MKRNLLSSAIIVAIMSLGLTGCDDKKAETETLPPANSQPAAPAPEAKPTEAPVAKAEAKP
ETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYADWLKDFKQGPTGEERTVYGI
YGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNTINEMDKYYTQENYKD
DAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAELKNIEEREGKTFHYYSLA
VMISAKQINNLISQDKFDAEAAMKKVSELETLVAQAKEADKGGMNFSFINSAGQYQLEAK
KYVRRIRDKVPYSDWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR
>gi|223713505|gb|ACDM01000093.1| GENE     8      7567  -      8400    643    277 aa, chain - ## HITS:1  COG:fdhD KEGG:ns NR:ns ## COG: fdhD COG1526 # Protein_GI_number: 16131735 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Escherichia coli K12 # 1     277       1     277     277     572  100.0  1e-163
MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPK
DLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTG
CGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGQLTGCTHAAAWMLPSG
ELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS
AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
>gi|223713505|gb|ACDM01000093.1| GENE     9      8594  -      9181    510    195 aa, chain + ## HITS:1  COG:fdoG KEGG:ns NR:ns ## COG: fdoG COG0243 # Protein_GI_number: 16131734 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     195       1     195    1016     412  100.0  1e-115
MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTRETRNTCTYCSVGCGLL
MYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKFPEYRAPGSDK
WQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCASASSNETGYLTQKF
SRALGMLAVDNQARV
>gi|223713505|gb|ACDM01000093.1| GENE    10      9230  -     11644   2854    804 aa, chain + ## HITS:1  COG:fdoG KEGG:ns NR:ns ## COG: fdoG COG0243 # Protein_GI_number: 16131734 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1     804     213    1016    1016    1684  100.0  0
MTNHWVDIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYY
APIRSGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRK
YDKSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ
GLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAF
FGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGC
LSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRW
LQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNYAIPHEPSSEE
VAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIFAGSWTPEGNQMA
RRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQLLKWDGTKWTGWDIP
DYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFETPLGTNPLHPNVISNPA
ARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAILQPEQFVEIGESLANKLG
IAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIGIPIHWGYEGVAKKGFIANTL
TPFVGDANTQTPEFKSFLVNVEKV
>gi|223713505|gb|ACDM01000093.1| GENE    11     11657  -     12559    886    300 aa, chain + ## HITS:1  COG:fdoH KEGG:ns NR:ns ## COG: fdoH COG0437 # Protein_GI_number: 16131733 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1     300       1     300     300     630  100.0  1e-180
MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKACQVACSEWNDIRDTVG
NNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCSDPGCLKACPAEGAIIQ
YANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCP
TGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAGVGGTHVMYVLHHADKPNLYHGL
PENPEISETVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRADEEENNLHEEKDEERK
>gi|223713505|gb|ACDM01000093.1| GENE    12     12556  -     13191    536    211 aa, chain + ## HITS:1  COG:ECs4818 KEGG:ns NR:ns ## COG: ECs4818 COG2864 # Protein_GI_number: 15834072 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     211       1     211     211     390  100.0  1e-108
MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLMQIMGTPQLARILHPFV
GVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAII
FLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKGTITA
MVEGWVTSAWAKKHHPRWYREVRKTTEKKAE
>gi|223713505|gb|ACDM01000093.1| GENE    13     13188  -     14117    970    309 aa, chain + ## HITS:1  COG:fdhE KEGG:ns NR:ns ## COG: fdhE COG3058 # Protein_GI_number: 16131731 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in formate dehydrogenase formation # Organism: Escherichia coli K12 # 1     309       1     309     309     618  100.0  1e-177
MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALI
AHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKHWQKLLMALIAELKPEMSG
PALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKAR
AEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSGKLHY
WSLDDEQAAIKAESCDDCDTYLKILYQEKDPKIEAVADDLASLVLDARMEQEGYARSSIN
PFLFPGEGE
>gi|223713505|gb|ACDM01000093.1| GENE    14     14447  -     14689    142     80 aa, chain - ## HITS:1  COG:no KEGG:SSON_4059 NR:ns ## KEGG: SSON_4059 # Name: yiiF # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1      80       1      80      80     143  100.0  2e-33
MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPG
IWQGCEEDGVEYQRKLREEW
>gi|223713505|gb|ACDM01000093.1| GENE    15     14907  -     15125    128     72 aa, chain - ## HITS:1  COG:no KEGG:SFV_3606 NR:ns ## KEGG: SFV_3606 # Name: yiiE # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1      72      49     120     120     133  100.0  2e-30
MAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV
VGVDDQCKEHKE
>gi|223713505|gb|ACDM01000093.1| GENE    16     15460  -     15567     68     35 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MVANINLIKQESYSVVNLEKQLSRTVTNKIITMSK
>gi|223713505|gb|ACDM01000093.1| GENE    17     15978  -     16919   1125    313 aa, chain - ## HITS:1  COG:ECs4811 KEGG:ns NR:ns ## COG: ECs4811 COG0454 # Protein_GI_number: 15834065 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 1     313      17     329     329     625  100.0  1e-179
MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGR
LYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKL
GFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQ
QYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHI
RYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAK
PFGPYEEGGNEEE
>gi|223713505|gb|ACDM01000093.1| GENE    18     16964  -     17401    407    145 aa, chain - ## HITS:1  COG:ECs4810 KEGG:ns NR:ns ## COG: ECs4810 COG1490 # Protein_GI_number: 15834064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Escherichia coli O157:H7 # 1     145       1     145     145     276  100.0  8e-75
MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEG
KMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNT
QTGRFAADMQVSLVNDGPVTFWLQV
>gi|223713505|gb|ACDM01000093.1| GENE    19     17398  -     18270    792    290 aa, chain - ## HITS:1  COG:ECs4809 KEGG:ns NR:ns ## COG: ECs4809 COG1295 # Protein_GI_number: 15834063 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1     290       1     290     290     528  100.0  1e-150
MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLVAVVFALFAA
FPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYSI
DSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNV
LRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAALLFEAGKKGFALYITMFPSYQL
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEDDEP
>gi|223713505|gb|ACDM01000093.1| GENE    20     18264  -     18863    784    199 aa, chain - ## HITS:1  COG:yihX KEGG:ns NR:ns ## COG: yihX COG1011 # Protein_GI_number: 16131725 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1     199       8     206     206     414  100.0  1e-116
MLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEA
LCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE
YPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGIT
SILVKDKTTIPDYFAKVLC
>gi|223713505|gb|ACDM01000093.1| GENE    21     18962  -     19747    548    261 aa, chain - ## HITS:1  COG:ECs4807 KEGG:ns NR:ns ## COG: ECs4807 COG1349 # Protein_GI_number: 15834061 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1     261       9     269     269     486  100.0  1e-137
MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGG
AGRASSVVNTAFEQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNH
LRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAI
ESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP
AALKSRLQDSQIEIILPQEDA
>gi|223713505|gb|ACDM01000093.1| GENE    22     19781  -     20677    564    298 aa, chain - ## HITS:1  COG:yihV KEGG:ns NR:ns ## COG: yihV COG0524 # Protein_GI_number: 16131723 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1     298       3     300     300     572  100.0  1e-163
MIRVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGR
VGDDDTGNSLLAELESWGVNTRYTKRYNQAKSSQSAIMVDTKGERIIINYPSPDLLPDAE
WLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSDHAAF
SEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTT
GAGDVFHGALAVALATSGDLAESVRFASGVAALKCTRPGGRAGIPDCDQTRSFLSLFV
>gi|223713505|gb|ACDM01000093.1| GENE    23     20845  -     21741    980    298 aa, chain + ## HITS:1  COG:yihU KEGG:ns NR:ns ## COG: yihU COG2084 # Protein_GI_number: 16131722 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1     298       1     298     298     542  100.0  1e-154
MAAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEF
IITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVP
VGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIA
LNALSAEAAVLCEALNLPFDVAVKVMSGTAAGKGHFTTSWPNKVLSGDLSPAFMIDLAHK
DLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGMTAKVKM
>gi|223713505|gb|ACDM01000093.1| GENE    24     21765  -     22643   1017    292 aa, chain + ## HITS:1  COG:yihT KEGG:ns NR:ns ## COG: yihT COG3684 # Protein_GI_number: 16131721 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Escherichia coli K12 # 1     292       1     292     292     556  100.0  1e-158
MNKYTINDITRASGGFAMLAVDQREAMRMMFAAAGAPAPVADSVLTDFKVNAAKALSPYA
SAILVDQQFCYRQVVEQNAIAKSCAMIVAADEFIPGNGIPVDSVVIDRKINPLQIKQDGG
KALKLLVLWRSDEDAQQRLDMVKEFNELCHSHGLVSIIEPVVRPPRRGDKFDREQAIIDA
AKELGDSGADLYKVEMPLYGKGPQQELLCASQRLNDHINMPWVILSSGVDEKLFPRAVRV
AMTAGASGFLAGRAVWASVVGLPDNELMLRDVCAPKLQQLGDIVDEMMAKRR
>gi|223713505|gb|ACDM01000093.1| GENE    25     22660  -     23901   1261    413 aa, chain + ## HITS:1  COG:yihS KEGG:ns NR:ns ## COG: yihS COG2942 # Protein_GI_number: 16131720 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Escherichia coli K12 # 1     413       6     418     418     836  100.0  0
MKWFNTLSHNRWLEQETDRIFDFGKNSVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVY
SVAAAMGRPGAYSLVDHGIKAMNGALRDKKYGGWYACVNDEGVVDASKQGYQHFFALLGA
ASAVTTGHPEARKLLDYTIEIIEKYFWSEEEQMCLESWDEAFSKTEEYRGGNANMHAVEA
FLIVYDVTHDKKWLDRAIRVASVIIHDVARNNHYRVNEHFDTQWNPLPDYNKDNPAHRFR
AFGGTPGHWIEWGRLMLHIHAALEARCEQPPAWLLEDAKGLFNATVRDAWAPDGADGIVY
TVDWEGKPVVRERVRWPIVEAMGTAYALYTVTGDRQYETWYQTWWEYCIKYLMDYENGSW
WQELDADNKVTTKVWDGKQDIYHLLHCLVIPRIPLAPGMAPAVAAGLLDINAK
>gi|223713505|gb|ACDM01000093.1| GENE    26     24039  -     24941    597    300 aa, chain + ## HITS:1  COG:yihR KEGG:ns NR:ns ## COG: yihR COG2017 # Protein_GI_number: 16131719 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1     300       9     308     308     612  100.0  1e-175
MQITNMHCSGQTVSLAAGDYHATIVTVGAGLAELTFQGCHLVIPHKPEEMPLAHLGKVLI
PWPNRIANGCYRYQGQEYQLPINEHSSKAAIHGLLAWRDWQISELTATSVTLTAFLPPSY
GYPFMLASQVVYSLNAHTGLSVEIASQNIGTVAAPYGVGIHPYLTCNLTSVDEYLFQLPA
NQVYAVDEHANPTTLHHVDELDLNFTQAKKIAATKIDHTFKTANDLWEMTITHPQQALSV
SLCSDQLWVQVYSGEKLQRQGLAVEPMSCPPNAFNSGIDLLLLESGKPHRLFFNIYGQRK
>gi|223713505|gb|ACDM01000093.1| GENE    27     25140  -     27176   2003    678 aa, chain + ## HITS:1  COG:yihQ KEGG:ns NR:ns ## COG: yihQ COG1501 # Protein_GI_number: 16131718 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1     678       1     678     678    1418  100.0  0
MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHSKDNPCLWIGSGIADIDMFRGNFSIKDK
LQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLR
LAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWT
FFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT
ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK
RVMWNWKWNSENYPQLDSRIKQWNQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASG
GDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV
SAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD
DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGN
RPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHT
YTLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPV
FYRADSEWAALFASLKSI
>gi|223713505|gb|ACDM01000093.1| GENE    28     27222  -     28607   1587    461 aa, chain + ## HITS:1  COG:yihP KEGG:ns NR:ns ## COG: yihP COG2211 # Protein_GI_number: 16131717 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1     461       8     468     468     883  100.0  0
MSHITTEDPATLRLPFKEKLSYGIGDLASNILLDIGTLYLLKFYTDVLGLPGTYGGIIFL
ISKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFILYASFPVTLLAIANFVGTPFDVTGKTV
MATILFMLYGLFFSMMNCSYGAMVPAITKNPNERASLAAWRQGGATLGLLLCTVGFVPVM
NLIEGNQQLGYIFAATLFSLFGLLFMWICYSGVKERYVETQPANPAQKPGLLQSFRAIAG
NRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSYMGFFSMGCIFIGVFLMPAS
VRRFGKKKVYIGGLLIWVLGDLLNYFFGGGSVSFVAFSCLAFFGSAFVNSLNWALVSDTV
EYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGYVPNVAQADHTIEGLRQL
IFIYPSALAVVTIVAMGCFYSLNEKMYVRIVEEIEARKRTA
>gi|223713505|gb|ACDM01000093.1| GENE    29     28650  -     30053   1065    467 aa, chain + ## HITS:1  COG:yihO KEGG:ns NR:ns ## COG: yihO COG2211 # Protein_GI_number: 16131716 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1     463       3     465     487     892   99.0  0
MSDHNPLTLKLNLREKIAYGMGDVGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAK
FFTAFTDMLTGFLLDSRKNIGPKGKFRPFILYAAVPAALIATLQFIATTFCLPVKTTIAT
ALFMMFGLSYSLMNCSYGAMIPAITKNPNERAQLAAYRQGGATIGLLICTVAFIPLQSLF
SDSTVGYACAALMFSIGGFIFMMLCYRGVKEHYVDTTPTGHKASILKSFCAIFRNPPLLV
LCIANLCTLAAFNIKLAIQVYYTQYVLNDINLLSWMGFFSMGCILIGVLLVPLTVKCFGK
KQVYLAGMVLWAVGDILNYFWGSNSFTFVMFSCVAFFGTAFVNSLNWALVPDTVDYGEWK
TGIRAEGSVYTGYTFFRKISAALAGFLPGIMLTQIGYVPNIAQSDATLQGLRQLIFIWPC
ALAIIAALTMGFFYTLNEKRFALIIEEINQRKNKEMATEEKTASVTL
>gi|223713505|gb|ACDM01000093.1| GENE    30     30121  -     30813    525    230 aa, chain + ## HITS:1  COG:no KEGG:JW3846 NR:ns ## KEGG: JW3846 # Name: ompL # Def: predicted outer membrane porin L # Organism: E.coli_J # Pathway: not_defined # 1     230       1     230     230     442  100.0  1e-123
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYN
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNL
TVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFMRVNDFNSSNG
KDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
>gi|223713505|gb|ACDM01000093.1| GENE    31     30904  -     32169   1011    421 aa, chain - ## HITS:1  COG:yihN KEGG:ns NR:ns ## COG: yihN COG0477 # Protein_GI_number: 16131714 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1     421       1     421     421     774  100.0  0
MLTKKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLTNGQIGNAMSVNSFVTTVGF
FLSIYFADKLPRRYTMSFSLIATGLLGVYLTTMPGYWGILFVWALFGVTCDMMNWPVLLK
SVSRLGNSEQQGRLFGFFETGRGIVDTVVAFSALAVFTWFGSGLLGFKAGIWFYSLIVIA
VGIIIFFVLNDKEEAPSVEVKKEDGASKNTSMTSVLKDKTIWLIAFNVFFVYAVYCGLTF
FIPFLKNIYLLPVALVGAYGIINQYCLKMIGGPIGGMISDKILKSPSKYLCYTFIISTAA
LVLLIMLPHESMPVYLGMACTLGFGAIVFTQRAVFFAPIGEAKIAENKTGAAMALGSFIG
YAPAMFCFSLYGYILDLNPGIIGYKIVFGIMACFAFSGAVVSVMLVKRISQRKKEMLAAE
A
>gi|223713505|gb|ACDM01000093.1| GENE    32     32271  -     33251    775    326 aa, chain - ## HITS:1  COG:no KEGG:JW3844 NR:ns ## KEGG: JW3844 # Name: yihM # Def: predicted sugar phosphate isomerase # Organism: E.coli_J # Pathway: not_defined # 1     326       1     326     326     635  100.0  0
MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE
RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE
GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA
NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC
LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE
DAINQINHVRNVLQQIKQEANHLLNH
>gi|223713505|gb|ACDM01000093.1| GENE    33     33259  -     33969    572    236 aa, chain - ## HITS:1  COG:ECs4794 KEGG:ns NR:ns ## COG: ECs4794 COG2188 # Protein_GI_number: 15834048 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1     236       1     236     236     475  100.0  1e-134
MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKI
FRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKNRTSDIPETLAPLIAVT
PSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKL
IFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL
>gi|223713505|gb|ACDM01000093.1| GENE    34     34186  -     36009   2287    607 aa, chain - ## HITS:1  COG:ECs4793 KEGG:ns NR:ns ## COG: ECs4793 COG1217 # Protein_GI_number: 15834047 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Escherichia coli O157:H7 # 1     607       1     607     607    1205  100.0  0
MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKN
TAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYG
LKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMA
EDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII
DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPAL
SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG
RGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALG
ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV
GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG
KKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRA
NRAPKDD
>gi|223713505|gb|ACDM01000093.1| GENE    35     36382  -     37791   1660    469 aa, chain + ## HITS:1  COG:ECs4792 KEGG:ns NR:ns ## COG: ECs4792 COG0174 # Protein_GI_number: 15834046 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Escherichia coli O157:H7 # 1     469       1     469     469     961  100.0  0
MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG
INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRSTG
IADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWNSSTQYEGGNKGHRPAVKGGY
FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK
YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIG
GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVSSPKARRIEVR
FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN
ELDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV
>gi|223713505|gb|ACDM01000093.1| GENE    36     38077  -     39126   1088    349 aa, chain + ## HITS:1  COG:ECs4791 KEGG:ns NR:ns ## COG: ECs4791 COG3852 # Protein_GI_number: 15834045 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrogen specific # Organism: Escherichia coli O157:H7 # 1     349       1     349     349     659  100.0  0
MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS
LNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQE
QLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRN
LVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQ
VLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL
FYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
>gi|223713505|gb|ACDM01000093.1| GENE    37     39138  -     40547   1537    469 aa, chain + ## HITS:1  COG:ECs4790 KEGG:ns NR:ns ## COG: ECs4790 COG2204 # Protein_GI_number: 15834044 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli O157:H7 # 1     469       1     469     469     915  100.0  0
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM
DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS
HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA
LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR
LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL
ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN
LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME
>gi|223713505|gb|ACDM01000093.1| GENE    38     40659  -     40769     88     36 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS
>gi|223713505|gb|ACDM01000093.1| GENE    39     40998  -     42371   1572    457 aa, chain - ## HITS:1  COG:ECs4789 KEGG:ns NR:ns ## COG: ECs4789 COG0635 # Protein_GI_number: 15834043 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 1     457       3     459     459     940  100.0  0
MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIP
FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK
AQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR
LVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVF
NYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVA
QREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRG
IALTRDDCIRRDVIKSLICNFRLDYAPIEKQWDLHFADYFAEDLKLLAPLAKDGLVDVDE
KGIQVTAKGRLLIRNICMCFDTYLRQKARMQQFSRVI
>gi|223713505|gb|ACDM01000093.1| GENE    40     42560  -     43069    574    169 aa, chain - ## HITS:1  COG:yihI KEGG:ns NR:ns ## COG: yihI COG3078 # Protein_GI_number: 16131706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     169       1     169     169     211  100.0  8e-55
MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNA
PKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGET
LSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN
>gi|223713505|gb|ACDM01000093.1| GENE    41     43687  -     44283    690    198 aa, chain + ## HITS:1  COG:ECs4787 KEGG:ns NR:ns ## COG: ECs4787 COG0218 # Protein_GI_number: 15834041 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1     198      13     210     210     374   99.0  1e-104
MSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD
GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW
AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQK
LDTWFSEMQPVEETQDGE
>gi|223713505|gb|ACDM01000093.1| GENE    42     44664  -     47450   3298    928 aa, chain - ## HITS:1  COG:polA_2 KEGG:ns NR:ns ## COG: polA_2 COG0749 # Protein_GI_number: 16131704 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Escherichia coli K12 # 289     928       1     640     640    1231  100.0  0
MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT
LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK
EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDS
LDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQN
LKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRI
ERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP
RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAE
RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI
HQLMENCTRLDVPLLVEVGSGENWDQAH
>gi|223713505|gb|ACDM01000093.1| GENE    43     47509  -     47694     56     61 aa, chain + ## HITS:1  COG:no KEGG:EcE24377A_4381 NR:ns ## KEGG: EcE24377A_4381 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1      61      20      80      80     101   98.0  7e-21
MSFSPLFVKIFCRSSGSLANRHVDNFVHKLFTSLLIYYHAFYSMMFVFVFHAVKNKSIPN
N
>gi|223713505|gb|ACDM01000093.1| GENE    44     47841  -     48746    598    301 aa, chain + ## HITS:1  COG:yihG KEGG:ns NR:ns ## COG: yihG COG0204 # Protein_GI_number: 16131703 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Escherichia coli K12 # 1     301      10     310     310     615  100.0  1e-176
MTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVKLLLPVPVIWRKVSRFCDFMMYCWCE
GLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICNHRSWADIVVLCVLFRKHIPMNKYFLKQ
QLAWVPFLGLACWSLDMPFMKRYSRAYLLRHPERRGKDVETTRRSCEKFRLHPTTIVNFV
EGSRFTQEKHQQTHSTFQNLLPPKAAGIAMALNVLGKQFDKLLNVTLCYPDNNRQPFFDM
LSGKLTRIVVHVDLQPIADELHGDYINDKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQN
K
>gi|223713505|gb|ACDM01000093.1| GENE    45     48787  -     50217   1056    476 aa, chain - ## HITS:1  COG:yihF KEGG:ns NR:ns ## COG: yihF COG5339 # Protein_GI_number: 16131702 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     476      15     490     490     922   99.0  0
MIRKSATGVIVALAVIWGGGTWYTGTQIQPGIEKFIKDFNDAKKKGEHAYDMTLSYQNFD
KGFFNSRFQMQMTFDNGAPDLNIKPGQKVVFDVDVEHGPLPITMLMHGNVIPALAAAKVN
LVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAPAEYGKFSFGEGQFTFNGDGS
SLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLARLEEKKFPVGESESKFNQINIINHG
EDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLTKGNQQLGSGEWSLIAESIDPSAVR
QFIIQYNIAMQKQLAAHPELANDEVALQEVNAALFKEYLPLLQKSEPTIKQPVRWKNALG
ELNANLDISIADPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKQA
DKQISGMMTLGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH
>gi|223713505|gb|ACDM01000093.1| GENE    46     50372  -     50998    820    208 aa, chain - ## HITS:1  COG:ECs4783 KEGG:ns NR:ns ## COG: ECs4783 COG0526 # Protein_GI_number: 15834037 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1     208       1     208     208     410  100.0  1e-115
MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLH
ISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQT
IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQL
NPQGMDTSNMDVFVQQYADTVKYLSEKK
>gi|223713505|gb|ACDM01000093.1| GENE    47     51015  -     51953    631    312 aa, chain - ## HITS:1  COG:yihE KEGG:ns NR:ns ## COG: yihE COG2334 # Protein_GI_number: 16131700 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Escherichia coli K12 # 1     312      17     328     328     637  100.0  0
MDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQ
LVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTG
RKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVL
RLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFS
EFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKV
LQEPPLQLTPMY
>gi|223713505|gb|ACDM01000093.1| GENE    48     52078  -     52347    397     89 aa, chain - ## HITS:1  COG:ECs4781 KEGG:ns NR:ns ## COG: ECs4781 COG3084 # Protein_GI_number: 15834035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1      89       1      89      89     158  100.0  3e-39
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA
KDAVIPGLQKDYEEDFKTALLRARGVIKE
>gi|223713505|gb|ACDM01000093.1| GENE    49     52417  -     53001    398    194 aa, chain + ## HITS:1  COG:mobA KEGG:ns NR:ns ## COG: mobA COG0746 # Protein_GI_number: 16131698 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Escherichia coli K12 # 1     194       1     194     194     401  100.0  1e-112
MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEI
YQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDA
PVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMVFMRLAGGHAVDFSDHKDAFVN
VNTPEELARWQEKR
>gi|223713505|gb|ACDM01000093.1| GENE    50     52983  -     53510    460    175 aa, chain + ## HITS:1  COG:mobB KEGG:ns NR:ns ## COG: mobB COG1763 # Protein_GI_number: 16131697 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Escherichia coli K12 # 6     175       1     170     170     333  100.0  7e-92
MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYEL
RKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVL
FRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQNG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:36:10 2011
 Seq name: gi|223713504|gb|ACDM01000094.1| Escherichia sp. 4_1_40B cont1.94, whole genome shotgun sequence 
 Length of sequence - 88316 bp
 Number of predicted genes - 80, with homology - 80
 Number of transcription units - 40, operones - 13 average op.length -  4.1
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +   TRNA          9 -        84   82.1  # Trp CCA 0 0
                               -    Term        78 -       111    3.1 
     1     1 Tu  1     .       -    CDS        180 -      1019    598  ## COG0583 Transcriptional regulator
                               -    Prom      1044 -      1103    6.1 
                               +    Prom      1000 -      1059    6.9 
     2     2 Tu  1     .       +    CDS       1138 -      1476    458  ## COG3085 Uncharacterized protein conserved in bacteria
                               -    Term      1219 -      1252   -0.2 
     3     3 Tu  1     .       -    CDS       1501 -      3021    936  ## COG0606 Predicted ATPase with chaperone activity
                               -    Prom      3226 -      3285    6.9 
     4     4 Op  1   7/0.120   +    CDS       3612 -      5258   1336  ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
     5     4 Op  2   5/0.440   +    CDS       5255 -      5518    235  ## COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit
     6     4 Op  3   5/0.440   +    CDS       5538 -      6467   1184  ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
     7     4 Op  4   8/0.080   +    CDS       6532 -      8382   2135  ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase
     8     4 Op  5     .       +    CDS       8385 -      9929   1552  ## COG1171 Threonine dehydratase
                               +    Term     10022 -     10052    1.0 
                               -    Term      9926 -      9963    6.1 
     9     5 Tu  1     .       -    CDS       9981 -     10874    894  ## COG0583 Transcriptional regulator
                               -    Prom     10918 -     10977    4.4 
                               +    Prom     10911 -     10970    8.1 
    10     6 Tu  1     .       +    CDS      11024 -     12499   2142  ## COG0059 Ketol-acid reductoisomerase
                               +    Term     12556 -     12594   10.2 
                               -    Term     12542 -     12582   10.6 
    11     7 Tu  1     .       -    CDS      12586 -     12867    275  ## COG0760 Parvulin-like peptidyl-prolyl isomerase
                               -    Prom     12895 -     12954    4.8 
    12     8 Tu  1     .       -    CDS      13296 -     13514    155  ## COG3692 Uncharacterized protein conserved in bacteria
                               -    Prom     13678 -     13737    1.8 
                               +    Prom     13645 -     13704    3.2 
    13     9 Tu  1     .       +    CDS      13731 -     15752   2308  ## COG0210 Superfamily I DNA and RNA helicases
                               +    Term     15816 -     15854    4.2 
                               -    Term     15745 -     15789    3.2 
    14    10 Tu  1     .       -    CDS      15799 -     17283   1608  ## COG0248 Exopolyphosphatase
    15    11 Tu  1     .       -    CDS      17419 -     18684   1312  ## COG0513 Superfamily II DNA and RNA helicases
                               -    Prom     18820 -     18879    2.4 
                               +    Prom     18645 -     18704    4.6 
    16    12 Tu  1     .       +    CDS      18815 -     19144    508  ## COG0526 Thiol-disulfide isomerase and thioredoxins
                               +    Term     19197 -     19230    0.2 
                               +    Prom     19230 -     19289    3.8 
    17    13 Op  1     .       +    CDS      19471 -     20730   1477  ## COG1158 Transcription termination factor
    18    13 Op  2     .       +    CDS      20740 -     20958    183  ## ECO111_4609 hypothetical protein
    19    13 Op  3   5/0.440   +    CDS      20970 -     22073    890  ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
    20    13 Op  4   4/0.560   +    CDS      22085 -     23131   1057  ## COG3765 Chain length determinant protein
                               +    Term     23142 -     23179    9.2 
    21    14 Op  1  10/0.040   +    CDS      23187 -     24317    971  ## COG0381 UDP-N-acetylglucosamine 2-epimerase
    22    14 Op  2   4/0.560   +    CDS      24314 -     25576   1230  ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase
    23    14 Op  3  16/0.000   +    CDS      25576 -     26643   1196  ## COG1088 dTDP-D-glucose 4,6-dehydratase
    24    14 Op  4   4/0.560   +    CDS      26662 -     27543    947  ## COG1209 dTDP-glucose pyrophosphorylase
    25    14 Op  5   4/0.560   +    CDS      27521 -     28195    396  ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
    26    14 Op  6   6/0.120   +    CDS      28200 -     29330   1262  ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
    27    14 Op  7     .       +    CDS      29332 -     30582   1270  ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid
    28    14 Op  8     .       +    CDS      30579 -     31658    880  ## EcolC_4210 4-alpha-L-fucosyltransferase
    29    14 Op  9     .       +    CDS      31655 -     33007   1348  ## SSON_3966 putative common antigen polymerase
    30    14 Op 10   4/0.560   +    CDS      33010 -     33750    863  ## COG1922 Teichoic acid biosynthesis proteins
                               +    Term     33769 -     33805    7.6 
                               +    Prom     33781 -     33840    4.5 
    31    15 Tu  1     .       +    CDS      33941 -     35326   1498  ## COG1113 Gamma-aminobutyrate permease and related permeases
                               +   TRNA      35429 -     35505   89.5  # Arg CCG 0 0
                               +   TRNA      35564 -     35639   84.9  # His GTG 0 0
                               +   TRNA      35660 -     35746   69.1  # Leu CAG 0 0
                               +   TRNA      35789 -     35865   92.7  # Pro TGG 0 0
                               +    Prom     35791 -     35850   80.3 
    32    16 Tu  1     .       +    CDS      36012 -     37247    771  ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)
    33    17 Tu  1     .       -    CDS      37406 -     39061   1525  ## COG3119 Arylsulfatase A and related enzymes
                               -    Prom     39188 -     39247    8.7 
                               -    Term     39693 -     39731    4.0 
    34    18 Op  1  11/0.040   -    CDS      39740 -     40936   1345  ## COG3071 Uncharacterized enzyme of heme biosynthesis
    35    18 Op  2  10/0.040   -    CDS      40939 -     42138   1365  ## COG2959 Uncharacterized enzyme of heme biosynthesis
    36    18 Op  3  23/0.000   -    CDS      42160 -     42900    613  ## COG1587 Uroporphyrinogen-III synthase
    37    18 Op  4     .       -    CDS      42897 -     43838   1026  ## COG0181 Porphobilinogen deaminase
                               -    Prom     43947 -     44006    3.9 
                               +    Prom     44012 -     44071    5.3 
    38    19 Tu  1     .       +    CDS      44225 -     46771   2300  ## COG3072 Adenylate cyclase
    39    20 Tu  1     .       -    CDS      46811 -     47131    500  ## COG1965 Protein implicated in iron transport, frataxin homolog
                               -    Prom     47155 -     47214    5.3 
    40    21 Tu  1     .       +    CDS      46922 -     47407     87  ## JW3780 hypothetical protein
                               +    Prom     47428 -     47487    4.0 
    41    22 Op  1   1/0.960   +    CDS      47594 -     47797    201  ## COG5567 Predicted small periplasmic lipoprotein
    42    22 Op  2   4/0.560   +    CDS      47834 -     48658    865  ## COG0253 Diaminopimelate epimerase
    43    22 Op  3  10/0.040   +    CDS      48655 -     49362    662  ## COG3159 Uncharacterized protein conserved in bacteria
    44    22 Op  4   8/0.080   +    CDS      49359 -     50255    865  ## COG4973 Site-specific recombinase XerC
    45    22 Op  5   5/0.440   +    CDS      50255 -     50971    550  ## COG1011 Predicted hydrolase (HAD superfamily)
                               +    Term     51001 -     51044    5.0 
    46    23 Tu  1     .       +    CDS      51055 -     53217   2272  ## COG0210 Superfamily I DNA and RNA helicases
                               +    Term     53231 -     53255   -1.0 
    47    24 Tu  1     .       -    CDS      53364 -     54128    748  ## COG3698 Predicted periplasmic protein
    48    25 Tu  1     .       +    CDS      54498 -     55448   1196  ## COG0598 Mg2+ and Co2+ transporters
                               +    Term     55460 -     55496    7.3 
    49    26 Op  1     .       -    CDS      55491 -     55856    320  ## B21_03645 hypothetical protein
    50    26 Op  2     .       -    CDS      55885 -     56265    115  ## JW5590 predicted inner membrane protein
                               -    Prom     56298 -     56357    3.2 
                               -    Term     56297 -     56334    1.7 
    51    27 Op  1   1/0.960   -    CDS      56360 -     57250   1013  ## COG2962 Predicted permeases
    52    27 Op  2     .       -    CDS      57302 -     57769    480  ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism
                               -    Prom     57798 -     57857    5.2 
                               +    Prom     57762 -     57821    4.3 
    53    28 Tu  1     .       +    CDS      57934 -     58803   1066  ## COG2829 Outer membrane phospholipase A
                               +    Term     58887 -     58920    4.5 
                               +    Prom     58848 -     58907    4.5 
    54    29 Op  1   4/0.560   +    CDS      58930 -     60765   1785  ## COG0514 Superfamily II DNA helicase
    55    29 Op  2     .       +    CDS      60829 -     61449    790  ## COG1280 Putative threonine efflux protein
                               +    Term     61473 -     61514    2.6 
                               -    Term     61461 -     61502    6.4 
    56    30 Tu  1     .       -    CDS      61511 -     62131    563  ## COG1280 Putative threonine efflux protein
                               -    Prom     62204 -     62263    4.9 
                               +    Prom     62037 -     62096    3.6 
    57    31 Op  1   5/0.440   +    CDS      62242 -     63264    717  ## COG2267 Lysophospholipase
    58    31 Op  2   3/0.720   +    CDS      63272 -     64072    941  ## COG0561 Predicted hydrolases of the HAD superfamily
    59    31 Op  3     .       +    CDS      64148 -     65047   1107  ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
    60    32 Tu  1     .       -    CDS      64935 -     65888    642  ## COG0583 Transcriptional regulator
                               -    Prom     65922 -     65981    4.9 
                               +    Prom     65928 -     65987    6.3 
    61    33 Tu  1     .       +    CDS      66125 -     68386   2712  ## COG0620 Methionine synthase II (cobalamin-independent)
                               +    Term     68395 -     68427    6.3 
                               -    Term     68301 -     68338    1.8 
    62    34 Tu  1     .       -    CDS      68426 -     69241    853  ## COG0412 Dienelactone hydrolase and related enzymes
                               -    Prom     69269 -     69328    5.3 
                               +    Prom     69197 -     69256    6.5 
    63    35 Tu  1     .       +    CDS      69503 -     70264    905  ## COG2820 Uridine phosphorylase
                               +    Term     70281 -     70315    5.2 
                               +    Prom     70313 -     70372    3.0 
    64    36 Op  1   5/0.440   +    CDS      70420 -     71832   1630  ## COG1322 Uncharacterized protein conserved in bacteria
                               +    Prom     71841 -     71900    3.2 
    65    36 Op  2   7/0.120   +    CDS      71927 -     72682    363  ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15
    66    36 Op  3  10/0.040   +    CDS      72696 -     73301    715  ## COG3165 Uncharacterized protein conserved in bacteria
    67    36 Op  4   6/0.120   +    CDS      73298 -     74938   1489  ## COG0661 Predicted unusual protein kinase
                               +    Term     74960 -     74994   -1.0 
    68    36 Op  5  16/0.000   +    CDS      75017 -     75286    200  ## PROTEIN SUPPORTED gi|90022866|ref|YP_528693.1| ribosomal protein L25
    69    36 Op  6  28/0.000   +    CDS      75290 -     75805    476  ## COG1826 Sec-independent protein secretion pathway components
    70    36 Op  7   2/0.920   +    CDS      75808 -     76584    883  ## COG0805 Sec-independent protein secretion pathway component TatC
                               +    Term     76591 -     76618    1.5 
    71    36 Op  8     .       +    CDS      76626 -     77408    583  ## COG0084 Mg-dependent DNase
                               -    Term     77333 -     77370    1.0 
    72    37 Tu  1     .       -    CDS      77405 -     77893    346  ## COG0250 Transcription antiterminator
                               -    Prom     77987 -     78046    6.4 
                               +    Prom     77926 -     77985    3.9 
    73    38 Op  1   6/0.120   +    CDS      78060 -     79553   1641  ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    74    38 Op  2     .       +    CDS      79599 -     80300    779  ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
                               +    Term     80398 -     80428    2.7 
    75    39 Op  1  20/0.000   -    CDS      80583 -     81746   1369  ## COG0183 Acetyl-CoA acetyltransferase
    76    39 Op  2     .       -    CDS      81756 -     83945   2758  ## COG1250 3-hydroxyacyl-CoA dehydrogenase
                               -    Prom     84008 -     84067    4.8 
                               +    Prom     84045 -     84104    2.4 
    77    40 Op  1   2/0.920   +    CDS      84135 -     85466   1637  ## COG0006 Xaa-Pro aminopeptidase
    78    40 Op  2   4/0.560   +    CDS      85538 -     86080    490  ## COG1739 Uncharacterized conserved protein
    79    40 Op  3   6/0.120   +    CDS      86119 -     87570   1441  ## COG0168 Trk-type K+ transport systems, membrane components
    80    40 Op  4     .       +    CDS      87582 -     88127    494  ## COG4635 Flavodoxin
Predicted protein(s)
>gi|223713504|gb|ACDM01000094.1| GENE     1       180  -      1019    598    279 aa, chain - ## HITS:1  COG:yifD+A KEGG:ns NR:ns ## COG: yifD+A COG0583 # Protein_GI_number: 16132258 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     279       1     279     279     537  100.0  1e-153
MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTAA
GEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWECMLNQWLGRLYQNQDAHTG
LQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQLLGYFTLALYTSAPSKLKGDL
NYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQIAMLNGCTWLPVSWARKKGGLH
TVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLDEVY
>gi|223713504|gb|ACDM01000094.1| GENE     2      1138  -      1476    458    112 aa, chain + ## HITS:1  COG:ECs4699 KEGG:ns NR:ns ## COG: ECs4699 COG3085 # Protein_GI_number: 15833953 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     112       1     112     112     208  100.0  2e-54
MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNELDLGKREPVTEEEKLF
VAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTDSDD
>gi|223713504|gb|ACDM01000094.1| GENE     3      1501  -      3021    936    506 aa, chain - ## HITS:1  COG:yifB KEGG:ns NR:ns ## COG: yifB COG0606 # Protein_GI_number: 16131625 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Escherichia coli K12 # 1     506      11     516     516     982  100.0  0
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEY
PAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVP
GAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTD
AVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFL
DELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT
PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKR
QNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT
>gi|223713504|gb|ACDM01000094.1| GENE     4      3612  -      5258   1336    548 aa, chain + ## HITS:1  COG:ilvG KEGG:ns NR:ns ## COG: ilvG COG0028 # Protein_GI_number: 16132231 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1     548       1     548     548    1110   99.0  0
MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA
TGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLA
CTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEVT
FPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEAD
YPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEM
NKLRQAHVALQGDLNALLPALQQPLNINDWQQHCAQLRDEHSWRYDHPGDAIYAPLLLKQ
LSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAVGAQVARPND
TVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTD
NPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASN
SEMLEKLS
>gi|223713504|gb|ACDM01000094.1| GENE     5      5255  -      5518    235     87 aa, chain + ## HITS:1  COG:ECs4703 KEGG:ns NR:ns ## COG: ECs4703 COG3978 # Protein_GI_number: 15833957 # Func_class: S Function unknown # Function: Acetolactate synthase (isozyme II), small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1      87       1      87      87     143  100.0  8e-35
MMQHQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQNINIELTVASPRSVDLL
FSQLNKLVDVAHVAICQSTTTSQQIRA
>gi|223713504|gb|ACDM01000094.1| GENE     6      5538  -      6467   1184    309 aa, chain + ## HITS:1  COG:ECs4704 KEGG:ns NR:ns ## COG: ECs4704 COG0115 # Protein_GI_number: 15833958 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Escherichia coli O157:H7 # 1     309       1     309     309     644  100.0  0
MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR
LHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDV
IIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGY
QEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ
VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDK
WGWLDQVNQ
>gi|223713504|gb|ACDM01000094.1| GENE     7      6532  -      8382   2135    616 aa, chain + ## HITS:1  COG:ECs4705 KEGG:ns NR:ns ## COG: ECs4705 COG0129 # Protein_GI_number: 15833959 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli O157:H7 # 1     616       1     616     616    1210   99.0  0
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV
AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS
NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ
SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV
ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD
IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT
LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG
GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY
EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL
IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLA
TSADKGAVRDKSKLGG
>gi|223713504|gb|ACDM01000094.1| GENE     8      8385  -      9929   1552    514 aa, chain + ## HITS:1  COG:ilvA KEGG:ns NR:ns ## COG: ilvA COG1171 # Protein_GI_number: 16131630 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli K12 # 1     514       1     514     514    1011  100.0  0
MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHS
FKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA
VRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHL
DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAE
GVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI
ALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLG
GRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVR
YMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFE
LGDHEPDFETRLNELGYDCHDETNNPAFRFFLAG
>gi|223713504|gb|ACDM01000094.1| GENE     9      9981  -     10874    894    297 aa, chain - ## HITS:1  COG:ilvY KEGG:ns NR:ns ## COG: ilvY COG0583 # Protein_GI_number: 16131631 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1     297       1     297     297     564  100.0  1e-161
MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEA
GEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSV
EIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPVRNQ
VSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVA
LLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIEAFWKILPNHK
>gi|223713504|gb|ACDM01000094.1| GENE    10     11024  -     12499   2142    491 aa, chain + ## HITS:1  COG:ilvC KEGG:ns NR:ns ## COG: ilvC COG0059 # Protein_GI_number: 16131632 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Escherichia coli K12 # 1     491       1     491     491     969  100.0  0
MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSG
LDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQP
LMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPE
NDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKL
VEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLF
QKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVL
MIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYG
NYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGY
MTDMKRIAVAG
>gi|223713504|gb|ACDM01000094.1| GENE    11     12586  -     12867    275     93 aa, chain - ## HITS:1  COG:ECs4709 KEGG:ns NR:ns ## COG: ECs4709 COG0760 # Protein_GI_number: 15833963 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli O157:H7 # 1      93       1      93      93     188  100.0  2e-48
MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP
AFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN
>gi|223713504|gb|ACDM01000094.1| GENE    12     13296  -     13514    155     72 aa, chain - ## HITS:1  COG:yifNm KEGG:ns NR:ns ## COG: yifNm COG3692 # Protein_GI_number: 16132261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1      69      15      83     163     143   98.0  7e-35
MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACI
VVPLSTTRDQTS
>gi|223713504|gb|ACDM01000094.1| GENE    13     13731  -     15752   2308    673 aa, chain + ## HITS:1  COG:rep KEGG:ns NR:ns ## COG: rep COG0210 # Protein_GI_number: 16131634 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 1     673       1     673     673    1322   99.0  0
MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA
REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL
TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNV
LDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVV
GDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK
RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEK
FLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKK
LGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIH
GMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMM
ERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGI
TRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHL
ANLKAMMAAKRGK
>gi|223713504|gb|ACDM01000094.1| GENE    14     15799  -     17283   1608    494 aa, chain - ## HITS:1  COG:ECs4712 KEGG:ns NR:ns ## COG: ECs4712 COG0248 # Protein_GI_number: 15833966 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Escherichia coli O157:H7 # 1     494       1     494     494     961  100.0  0
MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSENALSNEAMERG
WQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQEILGCPVQVISGEEEARLI
YQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRNLGQE
NFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQALQEIMMAQGMDERITLEKLQQLK
QRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIFTELNIQCMTLAGGALREGLVYGML
HLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVAANFFDQVENEWHLEAISRDLLISACQ
LHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNAVP
PRVAEQLCRLLRLAIIFASRRRDDLVPEMTLQANHELLTLTLPQGWLTQHPLGKEIIAQE
SQWQSYVHWPLEVH
>gi|223713504|gb|ACDM01000094.1| GENE    15     17419  -     18684   1312    421 aa, chain - ## HITS:1  COG:rhlB KEGG:ns NR:ns ## COG: rhlB COG0513 # Protein_GI_number: 16131636 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1     421       1     421     421     862  100.0  0
MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRS
G
>gi|223713504|gb|ACDM01000094.1| GENE    16     18815  -     19144    508    109 aa, chain + ## HITS:1  COG:ECs4714 KEGG:ns NR:ns ## COG: ECs4714 COG0526 # Protein_GI_number: 15833968 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1     109      19     127     127     221  100.0  2e-58
MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN
IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA
>gi|223713504|gb|ACDM01000094.1| GENE    17     19471  -     20730   1477    419 aa, chain + ## HITS:1  COG:ECs4716 KEGG:ns NR:ns ## COG: ECs4716 COG1158 # Protein_GI_number: 15833970 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Escherichia coli O157:H7 # 1     419       1     419     419     815  100.0  0
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
>gi|223713504|gb|ACDM01000094.1| GENE    18     20740  -     20958    183     72 aa, chain + ## HITS:1  COG:no KEGG:ECO111_4609 NR:ns ## KEGG: ECO111_4609 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1      72       1      72      72     130  100.0  1e-29
MPKTPRVYVAFCFYICNLNAALAMLGKFLEFAGMLCNLHIKWLIFAQDWWVWNGLSLLNK
GLRGYTSANNFL
>gi|223713504|gb|ACDM01000094.1| GENE    19     20970  -     22073    890    367 aa, chain + ## HITS:1  COG:rfe KEGG:ns NR:ns ## COG: rfe COG0472 # Protein_GI_number: 16131640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Escherichia coli K12 # 1     367       1     367     367     615  100.0  1e-176
MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQGLIPLVGGISVYAGIC
FTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRATIQAAVGIVMMVFGKLYLS
SLGYIFGSWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDGLLGGLSCVSFAAIGMILWFD
GQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDAGSTLIGFTVIWILLETTQGKTH
PISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHLIMRAGFTSRQAFVLITL
AAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLYGYCIKRAWKVARFIKRVKRRLRRNRG
GSPNLTK
>gi|223713504|gb|ACDM01000094.1| GENE    20     22085  -     23131   1057    348 aa, chain + ## HITS:1  COG:ECs4718 KEGG:ns NR:ns ## COG: ECs4718 COG3765 # Protein_GI_number: 15833972 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli O157:H7 # 1     348       2     349     349     682  100.0  0
MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAI
TDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQ
TDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVA
FASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNIS
RSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNTLNVGPTLDP
RFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTRRCSK
>gi|223713504|gb|ACDM01000094.1| GENE    21     23187  -     24317    971    376 aa, chain + ## HITS:1  COG:ECs4719 KEGG:ns NR:ns ## COG: ECs4719 COG0381 # Protein_GI_number: 15833973 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Escherichia coli O157:H7 # 1     376      15     390     390     746   99.0  0
MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNI
MQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGL
RTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWV
RDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ
IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSL
GKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQ
ACSRILEALKNNRISL
>gi|223713504|gb|ACDM01000094.1| GENE    22     24314  -     25576   1230    420 aa, chain + ## HITS:1  COG:ECs4720 KEGG:ns NR:ns ## COG: ECs4720 COG0677 # Protein_GI_number: 15833974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Escherichia coli O157:H7 # 1     420       1     420     420     850  100.0  0
MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKT
AVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAARSIAPVLKKGALVILEST
SPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVIGGM
TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV
WELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPQQARLIRTAREVNDHKPFWVI
DQVKAAVADCLAATDKRASELKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVV
EPNIHQLPKKLTGLCTLAQLDEALATADVLVMLVDHSQFKVINGDNVHQQYVVDAKGVWR
>gi|223713504|gb|ACDM01000094.1| GENE    23     25576  -     26643   1196    355 aa, chain + ## HITS:1  COG:rffG KEGG:ns NR:ns ## COG: rffG COG1088 # Protein_GI_number: 16131644 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Escherichia coli K12 # 1     355       1     355     355     741   99.0  0
MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI
CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT
EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL
PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCVA
TTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGHDLR
YAIDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQVQDGSYQGERLGLKG
>gi|223713504|gb|ACDM01000094.1| GENE    24     26662  -     27543    947    293 aa, chain + ## HITS:1  COG:rffH KEGG:ns NR:ns ## COG: rffH COG1209 # Protein_GI_number: 16131645 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli K12 # 1     293       1     293     293     593   99.0  1e-169
MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY
FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKL
RHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKV
VEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTV
EKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLQELLRARPRQY
>gi|223713504|gb|ACDM01000094.1| GENE    25     27521  -     28195    396    224 aa, chain + ## HITS:1  COG:ECs4723 KEGG:ns NR:ns ## COG: ECs4723 COG0454 # Protein_GI_number: 15833977 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 44     224       1     181     181     322   99.0  3e-88
MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRVQAKIAASNTGELDALQ
QLGFSLVEGEVDLALPVNNASDSGAVVAQETDIPALRQLASAAFAQSRFRAPWYAPDASS
RFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNATDARIGLLAGRGAGAELMQT
ALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVESTAYWLYR
>gi|223713504|gb|ACDM01000094.1| GENE    26     28200  -     29330   1262    376 aa, chain + ## HITS:1  COG:wecE KEGG:ns NR:ns ## COG: wecE COG0399 # Protein_GI_number: 16131647 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Escherichia coli K12 # 1     376       1     376     376     799  100.0  0
MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLE
MAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKT
RVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHET
KNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQA
AYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDI
DDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLS
PVNQRTVIATLLNYFS
>gi|223713504|gb|ACDM01000094.1| GENE    27     29332  -     30582   1270    416 aa, chain + ## HITS:1  COG:wzxE KEGG:ns NR:ns ## COG: wzxE COG2244 # Protein_GI_number: 16131648 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1     416       1     416     416     697  100.0  0
MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFRQLITVLGVLAGAGIFN
GVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAAAPISQGLFGNTDYQGLVR
LVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGVLAYYVSYRLGGYEGALLGLA
LIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLSKFTLMALITSVTLPVAYIMMRK
LLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDITREVVKSLKFV
LPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL
RFYILAEVSQFTLLMVFAHWLIPAHGALGAAQAYMATYIVYFSLCCGVFLLWRRRA
>gi|223713504|gb|ACDM01000094.1| GENE    28     30579  -     31658    880    359 aa, chain + ## HITS:1  COG:no KEGG:EcolC_4210 NR:ns ## KEGG: EcolC_4210 # Name: not_defined # Def: 4-alpha-L-fucosyltransferase # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1     359       1     359     359     749   99.0  0
MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDDGLSDSCPALSVQFFPG
KKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPSQFFWHIWGADLYELSSGL
RYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGELLFFPTRMDPSLNTMANDRQR
EGKMTILVGNSGDRSNEHIAALRAVHQQFGDTVKVVVPMGYPPNNEAYIEEVRQAGLELF
SEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQGIGTLCLLIQAGIPCVLNRENPFWQ
DMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKNTIAFFSPNYLQGWQRALAIAAGEVA
>gi|223713504|gb|ACDM01000094.1| GENE    29     31655  -     33007   1348    450 aa, chain + ## HITS:1  COG:no KEGG:SSON_3966 NR:ns ## KEGG: SSON_3966 # Name: wecF # Def: putative common antigen polymerase # Organism: S.sonnei # Pathway: not_defined # 1     450       1     450     450     751  100.0  0
MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR
FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL
MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK
AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM
FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF
IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI
IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL
MIAKLLYWLFESAGLIHKRTKSSLRTQVEG
>gi|223713504|gb|ACDM01000094.1| GENE    30     33010  -     33750    863    246 aa, chain + ## HITS:1  COG:wecG KEGG:ns NR:ns ## COG: wecG COG1922 # Protein_GI_number: 16131650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Escherichia coli K12 # 1     246       1     246     246     477  100.0  1e-134
MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAINAEKMLTIEDNAEVRE
LINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEV
LAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIMRDC
RLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIKRQLRLLRYLRW
HYTGNL
>gi|223713504|gb|ACDM01000094.1| GENE    31     33941  -     35326   1498    461 aa, chain + ## HITS:1  COG:ECs4729 KEGG:ns NR:ns ## COG: ECs4729 COG1113 # Protein_GI_number: 15833983 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1     461       1     461     461     808  100.0  0
MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIM
RSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP
EMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGG
QSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKV
LWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCN
SGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVF
VYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIG
MYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE
>gi|223713504|gb|ACDM01000094.1| GENE    32     36012  -     37247    771    411 aa, chain + ## HITS:1  COG:aslB KEGG:ns NR:ns ## COG: aslB COG0641 # Protein_GI_number: 16131652 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1     411       1     411     411     874   99.0  0
MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTHMDDDTLEAYVRHYIAA
SEPQNEVAFTWQGGEPTLLGLAFYRRAVALQAKYGAGRKISNSFQTNGVLLDDEWCAFLA
EHHFLVGLSLDGPPEIHNQYRVTKGGRPTHKLVMRALTLLQKHHVDYNVLVCVNRTSAQQ
PLQVYDFLCDAGVEFIQFIPVVERLADETTARDGLKLHAPGDIQGELTEWSVRPEEFGEF
LVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVCHHQPTCGRSVIVEHNGDVYACDHY
VYPQYRLGNMHQQTIAEMIDSPQQQAFGEDKFKQLPAQCRSCNVLKACWGGCPKHRFMLD
ASGKPGLNYLCAGYQRYFRHLPPYLKAMADLLAHGRPASDIMHAHLLVVSK
>gi|223713504|gb|ACDM01000094.1| GENE    33     37406  -     39061   1525    551 aa, chain - ## HITS:1  COG:aslA KEGG:ns NR:ns ## COG: aslA COG3119 # Protein_GI_number: 16131653 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1     551       1     551     551    1112  100.0  0
MEFSFSPKRLVVAVAAALPLMASAADTPSTATARKGFAGYDHPNQYLVKPATTIADNMMP
VMQHPAQDKETQQKLAELEKKTGKKPNVVVFLLDDVGWMDVGFNGGGVAVGNPTPDIDAV
ASQGLILTSAYSQPSSSPTRATILTGQYSIHHGILMPPMYGQPGGLQGLTTLPQLLHDQG
YVTQAIGKWHMGENKESQPQNVGFDDFRGFNSVSDMYTEWRDVHVNPEVALSPDRSEYIK
QLPFSKDDVHAVRGGEQQAIADITPKYMEDLDQRWMDYGVKFLDKMAKSDKPFFLYYGTR
GCHFDNYPNAKYAGSSPARTSYGDCMVEMNDVFANLYKTLEKNGQLDNTLIVFTSDNGPE
AEVPPHGRTPFRGAKGSTWEGGVRVPTFVYWKGMIQPRKSDGIVDLADLFPTALDLAGHP
GAKVANLVPKTTFIDGVDQTSFFLGTNGQSNRKAEHYFLNGKLAAVRMDEFKYHVLIQQP
YAYTQSGYQGGFTGTVMQTAGSSVFNLYTDPQESDSIGVRHIPMGVPLQTEMHAYMEILK
KYPPRAQIKSD
>gi|223713504|gb|ACDM01000094.1| GENE    34     39740  -     40936   1345    398 aa, chain - ## HITS:1  COG:ECs4732 KEGG:ns NR:ns ## COG: ECs4732 COG3071 # Protein_GI_number: 15833986 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli O157:H7 # 12     398      12     398     398     728  100.0  0
MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEW
LLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMAKNADHAEQPVVN
YLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNENHAARHGVDKLL
EVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQAR
ADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIIDGLKRQYDDRLLL
PIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPD
AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNPPQ
>gi|223713504|gb|ACDM01000094.1| GENE    35     40939  -     42138   1365    399 aa, chain - ## HITS:1  COG:hemX KEGG:ns NR:ns ## COG: hemX COG2959 # Protein_GI_number: 16131655 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli K12 # 1     399       1     393     393     583   98.0  1e-166
MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAIAIALAAGIGLYGWGKQ
QAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLKQANRQQETLAKQLDEVQQ
KVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLITV
RRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRLADNDSDGSPMDSDGEELSSSIS
EWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQDIYLRENIRSRLLVAAQAVPRHQEE
TYRQALENVSTWVRAYYDTDDATTKAFLDEVDQLSQQNISMDLPETLQSQAMLEKLMQTR
VRNLLAQPAAGTTEAKPAPAPAPAPAPQADTPAAAPQGE
>gi|223713504|gb|ACDM01000094.1| GENE    36     42160  -     42900    613    246 aa, chain - ## HITS:1  COG:hemD KEGG:ns NR:ns ## COG: hemD COG1587 # Protein_GI_number: 16131656 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Escherichia coli K12 # 1     246       1     246     246     473  100.0  1e-133
MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGQQLPQLADQLAALGESDLLFALS
QHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQLPE
LQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVT
MVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARELGWQDIKVADNADNDA
LLRALQ
>gi|223713504|gb|ACDM01000094.1| GENE    37     42897  -     43838   1026    313 aa, chain - ## HITS:1  COG:ECs4735 KEGG:ns NR:ns ## COG: ECs4735 COG0181 # Protein_GI_number: 15833989 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Escherichia coli O157:H7 # 1     313       8     320     320     594   99.0  1e-170
MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKG
LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP
AGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLE
SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG
GCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAR
EILAEVYNGDAPA
>gi|223713504|gb|ACDM01000094.1| GENE    38     44225  -     46771   2300    848 aa, chain + ## HITS:1  COG:cyaA KEGG:ns NR:ns ## COG: cyaA COG3072 # Protein_GI_number: 16131658 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate cyclase # Organism: Escherichia coli K12 # 1     848       1     848     848    1782  100.0  0
MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKG
ICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMGSTSSVGQSCSSDLDIWVC
HQSWLDSEERQLLQRKCSLLENWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHI
LLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSA
EEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLD
PYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVCEKLSRERACVGWRRAVLSQLVSEWGW
DEARLAMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTR
KLYAAFEALPGKVTLVNPQISPDLSEPNLTFIYVPPGRANRSGWYLYNRAPNIESIISHQ
PLEYNRYLNKLVAWAWFNGLLTSRTRLYIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTP
KALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRN
SWNEVRTLHFNGEQSMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSE
CIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSV
QVETNHVKLPAVVDGFASEGIIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELV
RDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDT
PLLQQYFS
>gi|223713504|gb|ACDM01000094.1| GENE    39     46811  -     47131    500    106 aa, chain - ## HITS:1  COG:STM3943 KEGG:ns NR:ns ## COG: STM3943 COG1965 # Protein_GI_number: 16767214 # Func_class: P Inorganic ion transport and metabolism # Function: Protein implicated in iron transport, frataxin homolog # Organism: Salmonella typhimurium LT2 # 1     106       1     106     106     193   94.0  5e-50
MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITFENGSKIIINRQEPLHQV
WLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVSFR
>gi|223713504|gb|ACDM01000094.1| GENE    40     46922  -     47407     87    161 aa, chain + ## HITS:1  COG:no KEGG:JW3780 NR:ns ## KEGG: JW3780 # Name: yzcX # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1     161       1     161     161     317  100.0  9e-86
MVAALFGCQPYLVQRLLAVDNDFAAILKGNGQYAAVDFAVDIAVAIPVVQAFFNGQPELI
SQAMKFTVVHCCILFLSDGGSIAAWGQGFKVCTSAAAFRHDSSVTGIMMSLCSERFVSSL
GRSYTTSFPVSGKHYDQVYRASILTLTELKKTTNKPHCDSA
>gi|223713504|gb|ACDM01000094.1| GENE    41     47594  -     47797    201     67 aa, chain + ## HITS:1  COG:Z5325 KEGG:ns NR:ns ## COG: Z5325 COG5567 # Protein_GI_number: 15804397 # Func_class: N Cell motility # Function: Predicted small periplasmic lipoprotein # Organism: Escherichia coli O157:H7 EDL933 # 1      67       1      67      67     109  100.0  1e-24
MKNVFKALTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVETQTQSTVPDKNDRATGD
GPSQVNY
>gi|223713504|gb|ACDM01000094.1| GENE    42     47834  -     48658    865    274 aa, chain + ## HITS:1  COG:ECs4739 KEGG:ns NR:ns ## COG: ECs4739 COG0253 # Protein_GI_number: 15833993 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Escherichia coli O157:H7 # 1     274       2     275     275     568  100.0  1e-162
MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE
PNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLE
SHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV
ELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL
>gi|223713504|gb|ACDM01000094.1| GENE    43     48655  -     49362    662    235 aa, chain + ## HITS:1  COG:yigA KEGG:ns NR:ns ## COG: yigA COG3159 # Protein_GI_number: 16131662 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     235       1     235     235     445  100.0  1e-125
MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMAR
ARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAG
ASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKA
VGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV
>gi|223713504|gb|ACDM01000094.1| GENE    44     49359  -     50255    865    298 aa, chain + ## HITS:1  COG:xerC KEGG:ns NR:ns ## COG: xerC COG4973 # Protein_GI_number: 16131663 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Escherichia coli K12 # 1     298       1     298     298     589  100.0  1e-168
MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA
VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN
RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP
IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH
KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK
>gi|223713504|gb|ACDM01000094.1| GENE    45     50255  -     50971    550    238 aa, chain + ## HITS:1  COG:yigB KEGG:ns NR:ns ## COG: yigB COG1011 # Protein_GI_number: 16131664 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1     238       1     238     238     486  100.0  1e-137
MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHPALRSFQNEDLQRLRQA
VREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAMINFAKWRSRIDVPQQTHD
TLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYFLAAEKLNVPI
GEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTWDSRLLPHLEISRLASLTSLI
>gi|223713504|gb|ACDM01000094.1| GENE    46     51055  -     53217   2272    720 aa, chain + ## HITS:1  COG:uvrD KEGG:ns NR:ns ## COG: uvrD COG0210 # Protein_GI_number: 16131665 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 1     720       1     720     720    1436  100.0  0
MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLESV
>gi|223713504|gb|ACDM01000094.1| GENE    47     53364  -     54128    748    254 aa, chain - ## HITS:1  COG:yigEm KEGG:ns NR:ns ## COG: yigEm COG3698 # Protein_GI_number: 16132262 # Func_class: S Function unknown # Function: Predicted periplasmic protein # Organism: Escherichia coli K12 # 1     254       1     254     254     517  100.0  1e-147
MAHQLLIGKGMITLNLKRIFLALTLLPLFAVAADDCALSDPTLTVQAYTVNPQTERVKMY
WQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLGLYIENGQQKVALNLASGE
GNFFIRPGGVFYVAGDKVGIVRLDAFKTSKEIQFAVQSGPMLMENGVINPRIHPNVASSK
IRNGVGINKHGNAVFLLSQQATNFYDFACYAKAKLNVEQLLYLDGTISHMYMKGGAIPWQ
RYPFVTMISVERKG
>gi|223713504|gb|ACDM01000094.1| GENE    48     54498  -     55448   1196    316 aa, chain + ## HITS:1  COG:ECs4746 KEGG:ns NR:ns ## COG: ECs4746 COG0598 # Protein_GI_number: 15834000 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Escherichia coli O157:H7 # 1     316       1     316     316     607  100.0  1e-174
MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIE
ASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELPAFRLYRMRAR
SQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSRVIMEGHQGDEYDEALSTLAE
LEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFL
MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIIFMI
LAGLAPYLYFKRKNWL
>gi|223713504|gb|ACDM01000094.1| GENE    49     55491  -     55856    320    121 aa, chain - ## HITS:1  COG:no KEGG:B21_03645 NR:ns ## KEGG: B21_03645 # Name: yigF # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     121       6     126     126     218  100.0  4e-56
MNDGSLSEKWKYRFNFYDQHGFPGFWGATPEYKAAFKALKVRQRLTIQMNFIAFFCSWIY
LFVLGLWKKAIIVLLLGILSLFVGALIGVNILGIAVAAYVAVNTNKWFYEKEVKGLNTWS
L
>gi|223713504|gb|ACDM01000094.1| GENE    50     55885  -     56265    115    126 aa, chain - ## HITS:1  COG:no KEGG:JW5590 NR:ns ## KEGG: JW5590 # Name: yigG # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1     126       1     126     126     182  100.0  3e-45
MLRIFIPTSNGKISRRRYIFSFILINFIFAFLIIFFNDGEAGFLVIVSTIVLHYLVINMN
CQRLRDSGFIYIKTYVFGTLAVYIISIITMIAEDFACSGNGSMIFLICYFSTFSMLMLAP
TDSSKQ
>gi|223713504|gb|ACDM01000094.1| GENE    51     56360  -     57250   1013    296 aa, chain - ## HITS:1  COG:ECs4749 KEGG:ns NR:ns ## COG: ECs4749 COG2962 # Protein_GI_number: 15834003 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1     295       1     295     295     508   99.0  1e-144
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQW
SYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF
LGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGML
IETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
>gi|223713504|gb|ACDM01000094.1| GENE    52     57302  -     57769    480    155 aa, chain - ## HITS:1  COG:ECs4750 KEGG:ns NR:ns ## COG: ECs4750 COG2050 # Protein_GI_number: 15834004 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli O157:H7 # 1     155       7     161     161     295  100.0  2e-80
MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAFKNQPMMVGNWAQSILH
GGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTIDLRVDYLRPGRGERFTAT
SSLLRAGNKVAVARVELHNEEQLYIASATATYMVG
>gi|223713504|gb|ACDM01000094.1| GENE    53     57934  -     58803   1066    289 aa, chain + ## HITS:1  COG:ECs4751 KEGG:ns NR:ns ## COG: ECs4751 COG2829 # Protein_GI_number: 15834005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane phospholipase A # Organism: Escherichia coli O157:H7 # 1     289       1     289     289     572  100.0  1e-163
MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYL
IYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQKSWWQL
SNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYT
RLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGY
GGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF
>gi|223713504|gb|ACDM01000094.1| GENE    54     58930  -     60765   1785    611 aa, chain + ## HITS:1  COG:ECs4752 KEGG:ns NR:ns ## COG: ECs4752 COG0514 # Protein_GI_number: 15834006 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Escherichia coli O157:H7 # 1     611       1     611     611    1253   99.0  0
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGCDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL
IRAHVDGDDEE
>gi|223713504|gb|ACDM01000094.1| GENE    55     60829  -     61449    790    206 aa, chain + ## HITS:1  COG:ECs4753 KEGG:ns NR:ns ## COG: ECs4753 COG1280 # Protein_GI_number: 15834007 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1     206       1     206     206     364  100.0  1e-101
MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGL
HLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLL
TNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGY
QRLAKWIDGFAGALFAGFGIHLIISR
>gi|223713504|gb|ACDM01000094.1| GENE    56     61511  -     62131    563    206 aa, chain - ## HITS:1  COG:ECs4754 KEGG:ns NR:ns ## COG: ECs4754 COG1280 # Protein_GI_number: 15834008 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1     206       1     206     206     352  100.0  3e-97
MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIAGLQTGLAIHIVLVGVG
LGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSLASTQSRRHLFQRAVFVNL
TNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDIIVMIGYATLAQRIALWIKGPK
QMKALNKIFGSLFMLVGALLASARHA
>gi|223713504|gb|ACDM01000094.1| GENE    57     62242  -     63264    717    340 aa, chain + ## HITS:1  COG:ECs4755 KEGG:ns NR:ns ## COG: ECs4755 COG2267 # Protein_GI_number: 15834009 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Escherichia coli O157:H7 # 1     340       1     340     340     699   99.0  0
MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVIC
PGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAF
WQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQI
LNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHW
VRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVI
KGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV
>gi|223713504|gb|ACDM01000094.1| GENE    58     63272  -     64072    941    266 aa, chain + ## HITS:1  COG:Z5347 KEGG:ns NR:ns ## COG: Z5347 COG0561 # Protein_GI_number: 15804418 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli O157:H7 EDL933 # 1     266      40     305     305     556   99.0  1e-158
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFQYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS
>gi|223713504|gb|ACDM01000094.1| GENE    59     64148  -     65047   1107    299 aa, chain + ## HITS:1  COG:ECs4757 KEGG:ns NR:ns ## COG: ECs4757 COG0697 # Protein_GI_number: 15834011 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1     299       1     299     299     540  100.0  1e-153
MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLY
MLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALL
AVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGA
FLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNM
HVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE
>gi|223713504|gb|ACDM01000094.1| GENE    60     64935  -     65888    642    317 aa, chain - ## HITS:1  COG:ECs4758 KEGG:ns NR:ns ## COG: ECs4758 COG0583 # Protein_GI_number: 15834012 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1     317       1     317     317     614  100.0  1e-176
MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP
QGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQVEM
DFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDYEVRLVLAPDHPLAAKTRIT
PEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHW
VVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQPVTEAFIRSARNHACDHLPFVKSAE
RPTYDAPTVRPGSPARL
>gi|223713504|gb|ACDM01000094.1| GENE    61     66125  -     68386   2712    753 aa, chain + ## HITS:1  COG:metE KEGG:ns NR:ns ## COG: metE COG0620 # Protein_GI_number: 16131678 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Escherichia coli K12 # 1     753       1     753     753    1530  100.0  0
MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLP
VGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFN
TNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDR
LSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLL
TTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRAD
LTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLR
DALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRAR
FKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVL
VHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYA
QSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDE
PALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDAD
VITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERL
WVNPDCGLKTRGWPETRAALANMVQAAQNLRRG
>gi|223713504|gb|ACDM01000094.1| GENE    62     68426  -     69241    853    271 aa, chain - ## HITS:1  COG:ECs4760 KEGG:ns NR:ns ## COG: ECs4760 COG0412 # Protein_GI_number: 15834014 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Escherichia coli O157:H7 # 1     271      23     293     293     548   99.0  1e-156
MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPAYHARPKQSDGPLPVVI
VVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPDSQV
LADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDKSLN
SPKQPVDIATDLNAPILGLYGGQDNSIPQESVETMRQALRAANAKAEIIVYPDAGHAFNA
DYRPSYHAASAEDGWQRMLEWFKQYGGKKSL
>gi|223713504|gb|ACDM01000094.1| GENE    63     69503  -     70264    905    253 aa, chain + ## HITS:1  COG:udp KEGG:ns NR:ns ## COG: udp COG2820 # Protein_GI_number: 16131680 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Escherichia coli K12 # 1     253       1     253     253     489  100.0  1e-138
MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGK
PVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGAS
LHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHF
KGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESH
AVKIVVEAARRLL
>gi|223713504|gb|ACDM01000094.1| GENE    64     70420  -     71832   1630    470 aa, chain + ## HITS:1  COG:ECs4762 KEGG:ns NR:ns ## COG: ECs4762 COG1322 # Protein_GI_number: 15834016 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1     470       6     475     475     805  100.0  0
MVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELL
NNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEH
SNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLTHEIRNLQQLNAQMA
QEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIV
RLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGL
RTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQS
RNAQQIADRASKLYDKMRLFIDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFR
GLGVEIKREINPDLAEQAVSQDEEYRLRSVPEQPNDEAYQRDDEYNQQSR
>gi|223713504|gb|ACDM01000094.1| GENE    65     71927  -     72682    363    251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 28     250       1     221     221 144  34 2e-33
MVDKLQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSG
VRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYV
QANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLS
KAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTA
GVVALHRGYKF
>gi|223713504|gb|ACDM01000094.1| GENE    66     72696  -     73301    715    201 aa, chain + ## HITS:1  COG:yigP KEGG:ns NR:ns ## COG: yigP COG3165 # Protein_GI_number: 16131683 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     201       1     201     201     375  100.0  1e-104
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVL
GEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPA
ELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEE
TAAVERAVDALTKRLEKLEAK
>gi|223713504|gb|ACDM01000094.1| GENE    67     73298  -     74938   1489    546 aa, chain + ## HITS:1  COG:ECs4765 KEGG:ns NR:ns ## COG: ECs4765 COG0661 # Protein_GI_number: 15834019 # Func_class: R General function prediction only # Function: Predicted unusual protein kinase # Organism: Escherichia coli O157:H7 # 1     546       1     546     546    1109  100.0  0
MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKLLGERLRLA
LQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEA
WFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRL
LPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGM
MVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEH
PENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFE
FAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLY
PQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQH
SVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFV
GWRKTR
>gi|223713504|gb|ACDM01000094.1| GENE    68     75017  -     75286    200     89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022866|ref|YP_528693.1| ribosomal protein L25 [Saccharophagus degradans 2-40] # 1      79       3      81      83 81  51 1e-14
MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFT
AKTIADKQADTNQEQAKTEDAKRHDKEQV
>gi|223713504|gb|ACDM01000094.1| GENE    69     75290  -     75805    476    171 aa, chain + ## HITS:1  COG:ECs4767 KEGG:ns NR:ns ## COG: ECs4767 COG1826 # Protein_GI_number: 15834021 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Escherichia coli O157:H7 # 1     171       1     171     171     267  100.0  9e-72
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ
DSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNE
AAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
>gi|223713504|gb|ACDM01000094.1| GENE    70     75808  -     76584    883    258 aa, chain + ## HITS:1  COG:ECs4768 KEGG:ns NR:ns ## COG: ECs4768 COG0805 # Protein_GI_number: 15834022 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Escherichia coli O157:H7 # 1     258       1     258     258     465  100.0  1e-131
MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMI
ATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYI
GMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCW
MGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG
RNREEENDAEAESEKTEE
>gi|223713504|gb|ACDM01000094.1| GENE    71     76626  -     77408    583    260 aa, chain + ## HITS:1  COG:tatD KEGG:ns NR:ns ## COG: tatD COG0084 # Protein_GI_number: 16132236 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli K12 # 1     260       5     264     264     539  100.0  1e-153
MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAG
VHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADL
NMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDE
RRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGED
AAWLAATTDANVKTLFGIAF
>gi|223713504|gb|ACDM01000094.1| GENE    72     77405  -     77893    346    162 aa, chain - ## HITS:1  COG:ECs4770 KEGG:ns NR:ns ## COG: ECs4770 COG0250 # Protein_GI_number: 15834024 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Escherichia coli O157:H7 # 1     162       1     162     162     330  100.0  9e-91
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD
PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE
GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
>gi|223713504|gb|ACDM01000094.1| GENE    73     78060  -     79553   1641    497 aa, chain + ## HITS:1  COG:ubiD KEGG:ns NR:ns ## COG: ubiD COG0043 # Protein_GI_number: 16131689 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Escherichia coli K12 # 1     497       1     497     497    1036  100.0  0
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSM
PVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNM
PTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYR
QQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDS
FPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEG
CSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTR
MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
IDAIWDELAIFNNGKSA
>gi|223713504|gb|ACDM01000094.1| GENE    74     79599  -     80300    779    233 aa, chain + ## HITS:1  COG:ECs4772 KEGG:ns NR:ns ## COG: ECs4772 COG0543 # Protein_GI_number: 15834026 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Escherichia coli O157:H7 # 1     233       1     233     233     480  100.0  1e-136
MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGF
IELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARS
ILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTG
TVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
>gi|223713504|gb|ACDM01000094.1| GENE    75     80583  -     81746   1369    387 aa, chain - ## HITS:1  COG:fadA KEGG:ns NR:ns ## COG: fadA COG0183 # Protein_GI_number: 16131691 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1     387       1     387     387     732   99.0  0
MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQ
TLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEH
MGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAAT
QSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVNGMVTAGTSSA
LSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSAS
DIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLM
ERKDVQFGLATMCIGLGQGIATVFERV
>gi|223713504|gb|ACDM01000094.1| GENE    76     81756  -     83945   2758    729 aa, chain - ## HITS:1  COG:fadB_2 KEGG:ns NR:ns ## COG: fadB_2 COG1250 # Protein_GI_number: 16131692 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 307     729       1     423     423     843  100.0  0
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSN
KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCEC
VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALK
IGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPLKLSKIEATMSFTIAKGMV
AQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVK
GKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLL
NKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQ
DTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAW
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKP
KKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVY
GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPA
RPVGDLKTA
>gi|223713504|gb|ACDM01000094.1| GENE    77     84135  -     85466   1637    443 aa, chain + ## HITS:1  COG:pepQ KEGG:ns NR:ns ## COG: pepQ COG0006 # Protein_GI_number: 16131693 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1     443       1     443     443     927  100.0  0
MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWV
PVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTEDVEVIALPKADGIGSLLP
AARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNG
HRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEM
RSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQ
FHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHL
AAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGI
RIEDNVVIHENNVENMTRDLKLA
>gi|223713504|gb|ACDM01000094.1| GENE    78     85538  -     86080    490    180 aa, chain + ## HITS:1  COG:yigZ KEGG:ns NR:ns ## COG: yigZ COG1739 # Protein_GI_number: 16131694 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1     180      26     205     205     329  100.0  2e-90
MLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPML
AQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCE
YHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE
>gi|223713504|gb|ACDM01000094.1| GENE    79     86119  -     87570   1441    483 aa, chain + ## HITS:1  COG:ECs4777 KEGG:ns NR:ns ## COG: ECs4777 COG0168 # Protein_GI_number: 15834031 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Escherichia coli O157:H7 # 1     483       1     483     483     848  100.0  0
MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKE
KGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGL
DSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAE
TAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINT
IIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFTLVVICTLVLWFHNVYSS
ALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRIL
LLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGV
DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTF
WRE
>gi|223713504|gb|ACDM01000094.1| GENE    80     87582  -     88127    494    181 aa, chain + ## HITS:1  COG:ECs4778 KEGG:ns NR:ns ## COG: ECs4778 COG4635 # Protein_GI_number: 15834032 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism # Function: Flavodoxin # Organism: Escherichia coli O157:H7 # 1     181       1     181     181     358  100.0  2e-99
MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYG
HYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMNSQWRPDRCA
VIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTL
K
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:36:38 2011
 Seq name: gi|223713503|gb|ACDM01000095.1| Escherichia sp. 4_1_40B cont1.95, whole genome shotgun sequence 
 Length of sequence - 16959 bp
 Number of predicted genes - 18, with homology - 17
 Number of transcription units - 16, operones - 2 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         60 -       266    181  ## ECP_2980 hypothetical protein
                               -    Prom       356 -       415    6.4 
                               +    Prom       391 -       450    3.6 
     2     2 Tu  1     .       +    CDS        498 -      1946    540  ## RPB_3532 hypothetical protein
                               +    Prom      2333 -      2392    7.4 
     3     3 Tu  1     .       +    CDS       2462 -      2941    -23  ## gi|256026198|ref|ZP_05440063.1| hypothetical protein E4_22691
                               +    Term      2951 -      2984    6.5 
     4     4 Op  1   9/0.000   -    CDS       4747 -      5034    403  ## COG1484 DNA replication protein
     5     4 Op  2     .       -    CDS       5034 -      5513    270  ## COG4584 Transposase and inactivated derivatives
                               -    Prom      5738 -      5797    3.4 
     6     5 Tu  1     .       +    CDS       5451 -      5699     85  ## gi|256026202|ref|ZP_05440067.1| hypothetical protein E4_22726
     7     6 Tu  1     .       +    CDS       5941 -      6582    148  ## p1ECUMN_0159 hypothetical protein
     8     7 Tu  1     .       -    CDS       6450 -      6782     95  ## p1ECUMN_0160 hypothetical protein
                               -    Prom      6872 -      6931    2.4 
     9     8 Tu  1     .       +    CDS       7485 -      8399    524  ## ECH74115_B0026 initiator RepB protein
                               +    Term      8407 -      8455   13.4 
                               -    Term      8394 -      8444    9.1 
    10     9 Tu  1     .       -    CDS       8678 -      9418    219  ## COG0582 Integrase
                               -    Prom      9531 -      9590    2.5 
    11    10 Op  1     .       -    CDS       9782 -      9949    109  ## SeSA_A3113 RelE/ParE family plasmid stabilization system protein
    12    10 Op  2     .       -    CDS      10018 -     10284    249  ## COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
                               -    Prom     10430 -     10489    5.9 
                               -    Term     10475 -     10535    3.4 
    13    11 Tu  1     .       -    CDS      10564 -     11115    237  ## gi|256026209|ref|ZP_05440074.1| NACHT family-like NTPase
                               -    Prom     11232 -     11291    6.2 
                               +    Prom     12706 -     12765    7.6 
    14    12 Tu  1     .       +    CDS      12871 -     13482    422  ## KPK_B0045 transposase
                               +    Prom     13712 -     13771    3.8 
    15    13 Tu  1     .       +    CDS      13813 -     14580    223  ## HCM1.193c hypothetical protein
                               +    Term     14750 -     14797    1.2 
                               -    Term     14570 -     14609    3.5 
    16    14 Tu  1     .       -    CDS      14816 -     15157    110  ## gi|256026212|ref|ZP_05440077.1| hypothetical protein E4_22776
                               -    Prom     15348 -     15407    8.6 
                               +    Prom     15071 -     15130    7.1 
    17    15 Tu  1     .       +    CDS      15356 -     15583    102  ## 
                               +    Prom     15607 -     15666    2.2 
    18    16 Tu  1     .       +    CDS      15716 -     16958    719  ## ECO111_p1-137 putative transposase
Predicted protein(s)
>gi|223713503|gb|ACDM01000095.1| GENE     1        60  -       266    181     68 aa, chain - ## HITS:1  COG:no KEGG:ECP_2980 NR:ns ## KEGG: ECP_2980 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1      68       1      68      68     100   75.0  2e-20
MYLKIRDRLGYMSNTSSNFEMAGVLLGKEVRKRKNTSGKNRNYSTDYGAWHDRVPRGAFA
WNSAQSVV
>gi|223713503|gb|ACDM01000095.1| GENE     2       498  -      1946    540    482 aa, chain + ## HITS:1  COG:no KEGG:RPB_3532 NR:ns ## KEGG: RPB_3532 # Name: not_defined # Def: hypothetical protein # Organism: R.palustris_HaA2 # Pathway: not_defined # 29     367      12     349     792     119   29.0  4e-25
MLKGFDITKAKAQEVDTELLKRRISTGKAIAFTGAGFSLGTKNVLGSTPPMAGELAKKLS
LLCNLEESEDLMFAADVALEYADNISVLDLLKDNYTLTSVSECHEKICKLPWKKFFTTNY
DNSIELACLNIGKRIESVDLSYKPTNFLKKNNVCLHINGKIESAEPEDLTSKIKLSDSSY
LSPDSFVNSDWYYHFKKDLETASAIVFMGYSMYDMDVKKFLFENPELQEKTYFVVRDGAD
FKEIFTLRKYGHVLPIGVDRFSDLMKDVQKQSHEDGVIFTETLVKYEVFDTQTDFRDIDS
ERLFLYGDYEIEKLHDSIRRIETIPYFIKRDIIPVCLNNIKNNNNIIITGDLGNGKSIVL
EMLAYELTVNGFHTYILRNNDGDYVSDLDQIIKHEGTAVIIIDNCSNHPGLIKHIFEVKA
DNLIYVFADRNSNDIKFNISLDFIEHNIDLLSSDEIASAVKIIDNLSTWQKFSALSTERK
KD
>gi|223713503|gb|ACDM01000095.1| GENE     3      2462  -      2941    -23    159 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256026198|ref|ZP_05440063.1| ## NR: gi|256026198|ref|ZP_05440063.1| hypothetical protein E4_22691 [Escherichia sp. 4_1_40B] # 1     159       1     159     159     294  100.0  1e-78
MDSPHYWVQYAMCRLSFSDYNRAQNYLTNAYQKAETKKGSYHTDNIDTQQARLYLNQCLD
HNNSSECYKLFDKAHALLVKLPNEGRKFRQVLLYKKVFDLKYQSFSKKNKTDFEQACKKL
LDQTKPDNVYPINTNMVRFITSAEEALIEILNTIMLERT
>gi|223713503|gb|ACDM01000095.1| GENE     4      4747  -      5034    403     95 aa, chain - ## HITS:1  COG:YPCD1.96c KEGG:ns NR:ns ## COG: YPCD1.96c COG1484 # Protein_GI_number: 16082779 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Yersinia pestis # 1      92       1      92     143     172   96.0  1e-43
MHELEVLLSRLKMEHLSYHVESLLEQAVKKELNYREFLCMALQQEWNDRHQRGMESRLKQ
ARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAAKT
>gi|223713503|gb|ACDM01000095.1| GENE     5      5034  -      5513    270    159 aa, chain - ## HITS:1  COG:YPCD1.97c KEGG:ns NR:ns ## COG: YPCD1.97c COG4584 # Protein_GI_number: 16082780 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1     159     150     308     308     302   92.0  2e-82
MVKYLKENFFVRYRRFDSFTHVNQLLEQWIADVADKRELRQFKETPEQRFALEQEHLQPL
PDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRIYSNEKLVAS
HRLCPASSGWQTVPEHHAPLWQQVSQVEHRPLSTYEELL
>gi|223713503|gb|ACDM01000095.1| GENE     6      5451  -      5699     85     82 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256026202|ref|ZP_05440067.1| ## NR: gi|256026202|ref|ZP_05440067.1| hypothetical protein E4_22726 [Escherichia sp. 4_1_40B] # 1      82       1      82      82     151  100.0  1e-35
MSEAVEPAVPDEEVLLEVFHHPLNLTFCSGPAWTACPWQEVIVVGQQQESGVEHDFPVVI
LQHRSLLVINQHRFHTTTEFDP
>gi|223713503|gb|ACDM01000095.1| GENE     7      5941  -      6582    148    213 aa, chain + ## HITS:1  COG:no KEGG:p1ECUMN_0159 NR:ns ## KEGG: p1ECUMN_0159 # Name: ydiA # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     213       1     213     213     437   97.0  1e-121
MNADTWTRLQAFRHALELTSCEASLTAGYDHLKDFPAGCSELASQTLTDYLTEDGSNLYS
CIVGMQWDNGPGRYGHVIAAPARDYIDLTLDQFPGYHNRIVAEPVESGGQLAADLNREPA
ISTADGIVASASDKVNYITEQKNRQPMVIITECYKLIRMTARFIPMCQSSQLFQHQIFPR
LFIISDVGSCSLSRNTLDRLATDWKVTLSVLSL
>gi|223713503|gb|ACDM01000095.1| GENE     8      6450  -      6782     95    110 aa, chain - ## HITS:1  COG:no KEGG:p1ECUMN_0160 NR:ns ## KEGG: p1ECUMN_0160 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 5     110       1     106     106     195   92.0  3e-49
MNILMTGTAAQTPVMDVTEIPAEPQVFQSGTLSTGLELVDTYLWIFKHFMEGKVLTRSLA
CLVYIKPYSDRTDSVTFQSVAKRSKVFLDKLQEPTSEMINKRGNIWCWKS
>gi|223713503|gb|ACDM01000095.1| GENE     9      7485  -      8399    524    304 aa, chain + ## HITS:1  COG:no KEGG:ECH74115_B0026 NR:ns ## KEGG: ECH74115_B0026 # Name: not_defined # Def: initiator RepB protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1     304      22     325     325     561   99.0  1e-159
MALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDF
KTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISF
SRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRE
SAQALYTFIESLPRDPAPVSLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQ
RGRTKLFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKL
FKSR
>gi|223713503|gb|ACDM01000095.1| GENE    10      8678  -      9418    219    246 aa, chain - ## HITS:1  COG:PSLT031 KEGG:ns NR:ns ## COG: PSLT031 COG0582 # Protein_GI_number: 17233417 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 15     240      16     257     260     176   50.0  5e-44
MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ
RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL
TDISYVRQMESWMITTRPRRRAPLWAVTDETMRNWLKQAVKRAEADGVHFSIPVTPHTFR
HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR
TLPPLK
>gi|223713503|gb|ACDM01000095.1| GENE    11      9782  -      9949    109     55 aa, chain - ## HITS:1  COG:no KEGG:SeSA_A3113 NR:ns ## KEGG: SeSA_A3113 # Name: not_defined # Def: RelE/ParE family plasmid stabilization system protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1      54      44      97      98      86   72.0  2e-16
MSDNNIGTPRPELVEDIFALPVERHMLYFIQTDTDIIIIRILSQHQDAGRHLNWQ
>gi|223713503|gb|ACDM01000095.1| GENE    12     10018  -     10284    249     88 aa, chain - ## HITS:1  COG:STM2955 KEGG:ns NR:ns ## COG: STM2955 COG3609 # Protein_GI_number: 16766261 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1      87      24     110     118     132   88.0  2e-31
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRDLLAEGL
SSGEPVAWEKDAFLKKVKAGTRASGENR
>gi|223713503|gb|ACDM01000095.1| GENE    13     10564  -     11115    237    183 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256026209|ref|ZP_05440074.1| ## NR: gi|256026209|ref|ZP_05440074.1| NACHT family-like NTPase [Escherichia sp. 4_1_40B] # 1     183     463     645     645     324  100.0  1e-87
MENTTEELIIPLMQEIGFKEENFSASTLAENFYYKLIGDARVIVQNKELRKDRKSNNNKL
ESMHDVSIGPFNDNILNVLAFSDIEKLSTYSLHDIIFDNAITTPSCLKIISGLDKIKSDG
IINDKNSMLIDKLLTQAGVKNRVFLVLENLVEDMYNYIYLKSLNHLNMIKKEKESLLGLD
NLF
>gi|223713503|gb|ACDM01000095.1| GENE    14     12871  -     13482    422    203 aa, chain + ## HITS:1  COG:no KEGG:KPK_B0045 NR:ns ## KEGG: KPK_B0045 # Name: not_defined # Def: transposase # Organism: K.pneumoniae_342 # Pathway: not_defined # 62     203     327     468     469     218   77.0  1e-55
MTALAAEFFTLDEVNRLKIIQDVIDRRLTTQMAAQRLGISDRQCRRLLARYREDGPLGMT
SRVSKSLTVQYDKVLYLIEDNEFSRRAIGKYIDVWHYPDGHKELRLNGVSIPYSTYDKLS
EIDQGAIVDNKRLGRALEMAQLVQAERDNNRSQSVPSGDGPSRRRKAPTTKKSQRSLDQD
DMFNALVKLQTRAEEIFGERNQK
>gi|223713503|gb|ACDM01000095.1| GENE    15     13813  -     14580    223    255 aa, chain + ## HITS:1  COG:no KEGG:HCM1.193c NR:ns ## KEGG: HCM1.193c # Name: not_defined # Def: hypothetical protein # Organism: S.typhi # Pathway: not_defined # 54     255       1     202     202     394  100.0  1e-108
MFIDYAVEPFYYDFGINLYEDGGNFSMASMVYYVGPAYYGSAFDDVLLQFQNAMKEKTLD
SVSLLISKIRRLDWQRLKEFFGPLAFNHPDCIDAIMTDGISTDASFTILNALISRTEMMS
SGEYAIEHDRSKNLLTYNERLNFLINCDKEGEFKHSEIATISFPLNLKKVYQIDSKESPS
VQLCDVLIGACIESVYQLMDSKVLNQNSVLSLYQDSQLIHFIPDIDFEGQKKFRKGSQSE
EYLTFIQNEIYSSKL
>gi|223713503|gb|ACDM01000095.1| GENE    16     14816  -     15157    110    113 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256026212|ref|ZP_05440077.1| ## NR: gi|256026212|ref|ZP_05440077.1| hypothetical protein E4_22776 [Escherichia sp. 4_1_40B] # 1     113       1     113     113     193  100.0  4e-48
MIDKCYIVSSNNLINRLDPSQIIDSKIYKSFPEKELFNPILIDVIQELRKNDFVRRSSVL
HRKLNKIDTITLTYLLDRFDENFLIEQLPNVCMKIEREFHTISYIDQLLRKQV
>gi|223713503|gb|ACDM01000095.1| GENE    17     15356  -     15583    102     75 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MVTVCLIEIFIYKIPTRNITIIVAESIFALLIPCHIYISDFISLMIFPRIAFPVKFLLTK
QSSLWTFELCPTPDI
>gi|223713503|gb|ACDM01000095.1| GENE    18     15716  -     16958    719    414 aa, chain + ## HITS:1  COG:no KEGG:ECO111_p1-137 NR:ns ## KEGG: ECO111_p1-137 # Name: not_defined # Def: putative transposase # Organism: E.coli_O111_H- # Pathway: not_defined # 1     414       1     414     465     811   96.0  0
MAINDAGMFTVKEINRLKILQDVIDRNIRPGQAAEMLVITPRHCSRLLKRYRQYGPLGMN
NQSRGRTGNRLLPASLTDQALSIIREHYRDFGPTLAREKLEEVHGLVLGKETIRRLMIKA
GLWIPRRQRAPKIHQPRYRRPCTGELIQIDGCDHHWFENRGRPCTALVYVDDATSRLMHL
LFVKSESTFTYFEATRGYIEKYGKPMILYSDKASIFRVNNKHATTGPGETQFARAMRCLN
ITPLCAETSQAKGRVERAHLTLQDRLVKELRLKGICTIEAANAFAEEYMADYNRRFAKEP
LHDFNAHRPLALDDDLDAEFTWREPRRVSKNLTVQYDKMLYLIEDNEYSRRAIGKYIDVW
HYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGHVLDVARQVQRKRDN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:37:48 2011
 Seq name: gi|223713502|gb|ACDM01000096.1| Escherichia sp. 4_1_40B cont1.96, whole genome shotgun sequence 
 Length of sequence - 44650 bp
 Number of predicted genes - 54, with homology - 48
 Number of transcription units - 36, operones - 11 average op.length -  2.6
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               -    Term        80 -       118    4.3 
     1     1 Tu  1     .       -    CDS        136 -      1425   1063  ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
                               -    Prom      1575 -      1634    2.8 
                               +    Prom      1496 -      1555    7.0 
     2     2 Op  1  31/0.000   +    CDS       1714 -      3114   1315  ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1
     3     2 Op  2     .       +    CDS       3114 -      4124   1048  ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2
     4     2 Op  3     .       +    CDS       4124 -      4252    100  ## 
                               +    Term      4416 -      4443    1.2 
                               -    Term      4308 -      4341    4.0 
     5     3 Tu  1     .       -    CDS       4357 -      5538   1168  ## COG0826 Collagenase and related proteases
                               -    Prom      5589 -      5648    3.7 
     6     4 Tu  1     .       -    CDS       5990 -      6598     54  ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
     7     5 Op  1     .       -    CDS       6917 -      7198    359  ## COG3668 Plasmid stabilization system protein
     8     5 Op  2     .       -    CDS       7195 -      7464    259  ## ECSE_P2-0092 hypothetical protein
                               -    Prom      7489 -      7548    4.8 
     9     6 Tu  1     .       -    CDS       8380 -      9186    780  ## EcE24377A_C0025 replication protein
                               -    Prom      9301 -      9360    3.0 
                               -    Term      9470 -      9526   -0.1 
    10     7 Tu  1     .       -    CDS       9542 -      9796    157  ## ROD_p1001 negative regulator of repA1 expression
                               -    Prom      9929 -      9988    4.0 
                               -    Term     10980 -     11016    2.3 
    11     8 Tu  1     .       -    CDS      11089 -     11301     86  ## APECO1_O1CoBM62 hypothetical protein
    12     9 Op  1     .       -    CDS      11433 -     11993    446  ## p1ECUMN_0075 conjugal transfer fertility inhibition protein FinO
    13     9 Op  2     .       -    CDS      12048 -     12362    239  ## ECO111_p3-76 conjugal transfer pilus acetylation protein TraX
    14     9 Op  3     .       -    CDS      12214 -     12768    264  ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
    15     9 Op  4     .       -    CDS      12824 -     13171    280  ## COG1475 Predicted transcriptional regulators
    16     9 Op  5     .       -    CDS      13230 -     13463    187  ## APECO1_O1CoBM15 hypothetical protein
    17     9 Op  6     .       -    CDS      13519 -     14040    531  ## COG0629 Single-stranded DNA-binding protein
                               -    Term     14808 -     14843    4.1 
    18    10 Op  1     .       -    CDS      14919 -     15482    420  ## EcSMS35_A0058 hypothetical protein
    19    10 Op  2     .       -    CDS      15529 -     16890    899  ## EcE24377A_E0031 hypothetical protein
    20    10 Op  3     .       -    CDS      16942 -     17172    132  ## EcSMS35_A0060 hypothetical protein
    21    11 Tu  1     .       -    CDS      18008 -     18985    801  ## COG3436 Transposase and inactivated derivatives
                               -    Prom     19049 -     19108    1.8 
    22    12 Op  1   5/0.000   -    CDS      19310 -     19570    214  ## COG3436 Transposase and inactivated derivatives
    23    12 Op  2   6/0.000   -    CDS      19584 -     19931    117  ## COG3436 Transposase and inactivated derivatives
    24    12 Op  3     .       -    CDS      19928 -     20605    354  ## COG2963 Transposase and inactivated derivatives
                               -    Prom     20707 -     20766    5.7 
    25    13 Op  1     .       -    CDS      20822 -     21814    307  ## ROD_p1471 hypothetical protein
    26    13 Op  2     .       -    CDS      21863 -     22018    169  ## B21_03477 hypothetical protein
                               -    Prom     22055 -     22114    4.9 
    27    14 Tu  1     .       -    CDS      22349 -     22591     77  ## 
                               -    Prom     22645 -     22704    1.9 
                               +    Prom     22500 -     22559    5.9 
    28    15 Tu  1     .       +    CDS      22596 -     23153    538  ## COG1961 Site-specific recombinases, DNA invertase Pin homologs
    29    16 Tu  1     .       -    CDS      23253 -     23654    293  ## gi|218511194|ref|YP_002415652.1| hypothetical protein pEC55989_0046
                               -    Prom     23679 -     23738    2.4 
    30    17 Tu  1     .       -    CDS      23863 -     25215    375  ## COG3344 Retron-type reverse transcriptase
    31    18 Tu  1     .       -    CDS      25691 -     25888    174  ## COG2963 Transposase and inactivated derivatives
                               -    Term     26587 -     26629    1.6 
    32    19 Op  1     .       -    CDS      26783 -     27994     91  ## EcE24377A_F0081 hypothetical protein
    33    19 Op  2     .       -    CDS      28006 -     28635    214  ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34
                               +    Prom     28019 -     28078    3.7 
    34    20 Tu  1     .       +    CDS      28109 -     28318    117  ## 
    35    21 Op  1     .       -    CDS      28628 -     29449    259  ## ROD_03471 AatB, putative membrane protein
    36    21 Op  2     .       -    CDS      29346 -     30413    372  ## ROD_03461 AatA, outer membrane protein
                               -    Prom     30647 -     30706    7.2 
                               +    Prom     30747 -     30806    6.9 
    37    22 Tu  1     .       +    CDS      30957 -     31430   -168  ## 
    38    23 Tu  1     .       +    CDS      32091 -     32339    121  ## COG2963 Transposase and inactivated derivatives
                               +    Prom     32371 -     32430    3.7 
    39    24 Tu  1     .       +    CDS      32482 -     32718    112  ## COG2963 Transposase and inactivated derivatives
                               +    Term     32847 -     32906    2.0 
    40    25 Tu  1     .       -    CDS      32690 -     33439    438  ## COG3468 Type V secretory pathway, adhesin AidA
                               -    Prom     33481 -     33540    2.6 
    41    26 Tu  1     .       +    CDS      33203 -     33661    101  ## 
                               +    Term     33669 -     33701   -0.7 
                               -    Term     33650 -     33695    2.1 
    42    27 Tu  1     .       -    CDS      33777 -     34172    281  ## CP0070 extracellular serine protease SepA
                               +    Prom     33832 -     33891    3.7 
    43    28 Tu  1     .       +    CDS      34116 -     34340    165  ## 
    44    29 Tu  1     .       -    CDS      36006 -     36206     69  ## gi|218511215|ref|YP_002415673.1| hypothetical protein pEC55989_0067
                               +    Prom     36675 -     36734    8.2 
    45    30 Tu  1     .       +    CDS      36937 -     37287     82  ## gi|218511217|ref|YP_002415675.1| 14 kDa aggregative adherence fimbriae I protein (Fragment) (modular protein)
                               +    Term     37374 -     37416   -0.9 
                               +    Prom     38144 -     38203    8.1 
    46    31 Op  1     .       +    CDS      38392 -     38925     26  ## COG2207 AraC-type DNA-binding domain-containing proteins
                               +    Prom     38931 -     38990    2.6 
    47    31 Op  2     .       +    CDS      39026 -     39430    154  ## COG3677 Transposase and inactivated derivatives
                               +    Term     39534 -     39575    4.2 
    48    32 Op  1     .       -    CDS      39673 -     40497    251  ## COG3547 Transposase and inactivated derivatives
    49    32 Op  2     .       -    CDS      40524 -     40691    102  ## XBJ1_2220 transposase
                               +    Prom     40596 -     40655    3.6 
    50    33 Tu  1     .       +    CDS      40728 -     40964    110  ## gi|256026263|ref|ZP_05440128.1| hypothetical protein E4_23031
                               +    Prom     41545 -     41604    4.9 
    51    34 Tu  1     .       +    CDS      41714 -     41989    189  ## COG2963 Transposase and inactivated derivatives
                               +    Prom     42172 -     42231    9.3 
    52    35 Tu  1     .       +    CDS      42263 -     42415    112  ## gi|256026268|ref|ZP_05440133.1| hypothetical protein E4_23056
                               +    Term     42453 -     42511    1.2 
    53    36 Op  1     .       -    CDS      42918 -     43457    258  ## COG1443 Isopentenyldiphosphate isomerase
    54    36 Op  2     .       -    CDS      43461 -     44489    364  ## gi|256026270|ref|ZP_05440135.1| hypothetical protein E4_23066
                               -    Prom     44534 -     44593   11.5 
Predicted protein(s)
>gi|223713502|gb|ACDM01000096.1| GENE     1       136  -      1425   1063    429 aa, chain - ## HITS:1  COG:STM1598 KEGG:ns NR:ns ## COG: STM1598 COG1167 # Protein_GI_number: 16764942 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 1     428      41     468     474     745   87.0  0
MTVGHAYQLLESQGRIIARPQSGYYVAPRPILQPTVQPALVMRDEAVDINTSIFEMLQAS
RDASVMPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVLENLPPGNAELRHAIARRYAQ
QGITVSPDDIVITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVAT
DVKEGIDLAALEQALQDYPVKACWLMTNSQNPLGFTLSPAKKARLVALLDKHNVMLIEDD
VYSELYFGREKPLPAKAWDRSDRILHCSSFSKCLVPGFRIGWLAAGKHARTIQRLQLMST
LSTSSPMQLALVDYLSTRRYDVHLRRLRRQLAERKQQAWQLLLRHLPADVKIHHNNSGYF
LWLELPESMDAGELTAQALAHQISIAPGKMFSTSDTWKRFFRFNTAWQWGESEESAVKQL
GQLIREQLK
>gi|223713502|gb|ACDM01000096.1| GENE     2      1714  -      3114   1315    466 aa, chain + ## HITS:1  COG:STM0360 KEGG:ns NR:ns ## COG: STM0360 COG1271 # Protein_GI_number: 16763740 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 4     455       3     456     467     749   85.0  0
MFGLDAYHLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKSKNPVWRSLYHFWSKI
FAVNFGMGVVSGLVMAYQFGTNWSGFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGW
NKVGPGLHFFSTCMVALGTLISTFWILASNSWMQTPQGFEIVNGQVVPVDWFAVIFNPSF
PYRLLHMSVAAFLSSALFVGASAAWHLLRGNTTPAIRTMFSMALWMTLIVAPVQALIGDM
HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMEQERTRYGLAIPALGSLILTHS
LDKQVPALKEFAKEDRPHSTIVFWSFRIMAGLGMLMILLGLCALWLRYRQRLYTSRPFLR
FALWMGPSGLIAILAGWVTTEVGRQPWVVYGLQRTADAVSAHGDLHMSISLLAFFVVYSS
VFGVGYSYMIRLIRKGLLEDDSAPPPGTPARPLSAAVLDSQHKAHR
>gi|223713502|gb|ACDM01000096.1| GENE     3      3114  -      4124   1048    336 aa, chain + ## HITS:1  COG:STM0361 KEGG:ns NR:ns ## COG: STM0361 COG1294 # Protein_GI_number: 16763741 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1     336       1     336     336     462   76.0  1e-130
MGIDLSVIWFVIIVFATLMYIVMDGFDLGIGILFPVTRNAEDRDVMVNSVAPVWDGNETW
LVLGGAGLFGAFPMAYAVIIDALTIPLTLMLIGLIFRGVAFEFRFKATPAHRPFWDHAFL
GGSILATFAQGIVVGAVINGFPVTGRSYSGGPFDWLTPFTLFCGVGLVVAYALLGATWLV
MKSENPLQDKMRSVAKKLLLALLLSIAIISLWTPLAHPAIADRWFTLPNLGYLLPVPVLV
IAFSVWLWRTLGRPENHTFPFVLTLGLIFLGFSGLGISIWPHIIPPSVTLWQAAAPAQSQ
GFMLVGALLIIPVILVYTFWSYYVFRGKVQHGEGYH
>gi|223713502|gb|ACDM01000096.1| GENE     4      4124  -      4252    100     42 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MQHSLWKRLMWLVILWGGSVLALAAVGMFFRLLMTAAGFKAH
>gi|223713502|gb|ACDM01000096.1| GENE     5      4357  -      5538   1168    393 aa, chain - ## HITS:1  COG:ECs2039 KEGG:ns NR:ns ## COG: ECs2039 COG0826 # Protein_GI_number: 15831293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1     392     275     666     667     746   89.0  0
MLDAIIEDRSDLARASSGRTEHFFIPFTDKTFHRGSTDYFVNARKGDIGAFDSQKFIGLP
VGEVLKVAKDHLDVEASEPLANGDGLNVLIKHEVVGFHANTVEKIGENSYRVWPNEMPAD
LHKVRPRHPLNRNLDHNWQQALTKTSSERRVAMDIELGGWQEQLILTLTSEEGVSVTHTL
DGQFDDANNAEKALSNLKNVLAKLGQTLYYARDIQVNLPGALFVPNGLLNVFRREAIEML
DKARLARYKRGVRKSVSDPAPVYPQTHLSFLANVYNQKAREFYHCYGVQLIDAAYEAHQE
KGDVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIG
KIKDHILKMPLPGSVVGSVSPEDLMKTLPKRKP
>gi|223713502|gb|ACDM01000096.1| GENE     6      5990  -      6598     54    202 aa, chain - ## HITS:1  COG:PSLT049 KEGG:ns NR:ns ## COG: PSLT049 COG0847 # Protein_GI_number: 17233424 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Salmonella typhimurium LT2 # 2      65      63     126     138      79   62.0  3e-15
MARQAYDWLSLAPLFLDTETTGLDNTAKALEIGLTDATGQVVFETRLKPTVAIGAQAAAV
HGISEQALCGAPSWTDVARQLRHAIGDRPVIIFNARFDIRILKQTAAAHSDPADWLEELT
VYCAMELAAGYYGGPPGIRKINHVKTAFYPNDFQESPRWRDNSGFGVLNRTILYILTREC
TEVSQTVIGRSEHFVQPLRSVS
>gi|223713502|gb|ACDM01000096.1| GENE     7      6917  -      7198    359     93 aa, chain - ## HITS:1  COG:SMa0473 KEGG:ns NR:ns ## COG: SMa0473 COG3668 # Protein_GI_number: 16262701 # Func_class: R General function prediction only # Function: Plasmid stabilization system protein # Organism: Sinorhizobium meliloti # 2      93       1      91      97      60   41.0  7e-10
MMEIFWTMLASLDRKRIRENIAEQNLMAAIELDERIGYSASSLAGQPYKGRNGRVEGTRE
LVIHPHFVLVYEVDSQWGKVYILRVLHTAQKWP
>gi|223713502|gb|ACDM01000096.1| GENE     8      7195  -      7464    259     89 aa, chain - ## HITS:1  COG:no KEGG:ECSE_P2-0092 NR:ns ## KEGG: ECSE_P2-0092 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1      89       1      89      89     141   97.0  6e-33
MAQVNMSLRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQHNTWFRDQVTAGRQQL
EHGDVLPHDMVESSAAAWRDEMSRKVAGK
>gi|223713502|gb|ACDM01000096.1| GENE     9      8380  -      9186    780    268 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_C0025 NR:ns ## KEGG: EcE24377A_C0025 # Name: repA # Def: replication protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     268      18     285     285     449   97.0  1e-125
MFTPREGAGTLKFCEKLMEKAVGFSSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALLQ
GLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTSLSELGLITYQTEYD
PLIGCYIPTDITFTLALFAALDVSEDAVAAARRSRVVWENKQRKKQGLDTLGMDELIAKA
WRFVRERFRSYQTELKSRGIKRARARRDAGRERQDIVTLVKRQLTREISEGRFTASREAV
KREVERRVKERMILSRNRNYSRLATASP
>gi|223713502|gb|ACDM01000096.1| GENE    10      9542  -      9796    157     84 aa, chain - ## HITS:1  COG:no KEGG:ROD_p1001 NR:ns ## KEGG: ROD_p1001 # Name: repA2 # Def: negative regulator of repA1 expression # Organism: C.rodentium # Pathway: not_defined # 1      84       1      84      84     125   97.0  4e-28
MSQTENTVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMC
NEDGLTQAEVLTALIKSEAQKRCM
>gi|223713502|gb|ACDM01000096.1| GENE    11     11089  -     11301     86     70 aa, chain - ## HITS:1  COG:no KEGG:APECO1_O1CoBM62 NR:ns ## KEGG: APECO1_O1CoBM62 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1      70       1      70      70      80   92.0  2e-14
MNGFRNSSRNGQVWRWQRAGSRAVILEVSGRWMEAAEAWRRAAGVAPRTDWQQFARKRAE
HCHRRSRGRV
>gi|223713502|gb|ACDM01000096.1| GENE    12     11433  -     11993    446    186 aa, chain - ## HITS:1  COG:no KEGG:p1ECUMN_0075 NR:ns ## KEGG: p1ECUMN_0075 # Name: finO # Def: conjugal transfer fertility inhibition protein FinO # Organism: E.coli_UMN026 # Pathway: not_defined # 1     186       1     186     186     313   96.0  2e-84
MTEQKRPVLTLKRKTEGETPVRSRKTIINVTTPPKWKVKKQKLAEKAAREAELAAKKAQA
RQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRDVLLEDVAQRNIPLSHKKL
RRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEAYAAARLDKIRRQNRIKAELQ
AVLDEK
>gi|223713502|gb|ACDM01000096.1| GENE    13     12048  -     12362    239    104 aa, chain - ## HITS:1  COG:no KEGG:ECO111_p3-76 NR:ns ## KEGG: ECO111_p3-76 # Name: not_defined # Def: conjugal transfer pilus acetylation protein TraX # Organism: E.coli_O111_H- # Pathway: not_defined # 1     104     145     248     248     178   98.0  5e-44
MALWGPLSGTSYGIAGLLMLAVSHRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVA
GLLMTVLTVGLVSCAGKSLPRFWPGDFFPVFYACHLAVLGVLAL
>gi|223713502|gb|ACDM01000096.1| GENE    14     12214  -     12768    264    184 aa, chain - ## HITS:1  COG:PSLT108 KEGG:ns NR:ns ## COG: PSLT108 COG0507 # Protein_GI_number: 17233470 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Salmonella typhimurium LT2 # 1     131     547     677    1752     210   81.0  1e-54
MAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQ
AILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHD
RYVIDRVAYSSGHSSDGPVGALVRHQLRHCRAADAGSQPPAVPGGRQSGTSGAGRLPAGC
YSGA
>gi|223713502|gb|ACDM01000096.1| GENE    15     12824  -     13171    280    115 aa, chain - ## HITS:1  COG:PSLT068 KEGG:ns NR:ns ## COG: PSLT068 COG1475 # Protein_GI_number: 17233437 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 5     107       9     110     665     121   65.0  3e-28
MPVTKCEPETTRKASLKSVKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESV
SELAESIKGVGLLQNLVVHTLPGDRYGVAAGGRRLAALNMLAERGIIPAGRCRTS
>gi|223713502|gb|ACDM01000096.1| GENE    16     13230  -     13463    187     77 aa, chain - ## HITS:1  COG:no KEGG:APECO1_O1CoBM15 NR:ns ## KEGG: APECO1_O1CoBM15 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1      77      10      86      86     148   94.0  5e-35
MSEYFRIFQGLPDGSFTREQAEAVAAQYRNVFIEDDQGTHFRLVARQDGTLIWRSWNFED
CAGYWMNRYIRDFGILK
>gi|223713502|gb|ACDM01000096.1| GENE    17     13519  -     14040    531    173 aa, chain - ## HITS:1  COG:BU545 KEGG:ns NR:ns ## COG: BU545 COG0629 # Protein_GI_number: 15617138 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Buchnera sp. APS # 1     173       1     171     171     179   55.0  2e-45
MAVRGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTEWHRVVL
FGKLAEVAGEYLHKGEQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNA
QAQPKPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQQPSEPAYDFDDDIPF
>gi|223713502|gb|ACDM01000096.1| GENE    18     14919  -     15482    420    187 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_A0058 NR:ns ## KEGG: EcSMS35_A0058 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1     187       1     187     187     366   98.0  1e-100
MHSQLRERIRLMRARLDNVAPVAEIRAESQLFVTPAPVCDRLVTLAEISNRDHILEPSAG
TGAILRAIRDTAPEAMCDAVEINSGLVRYLRENFNGVRVQCGDFMEWQPVQYYSRVIMNP
PFSHGQDIRHILRAFSLLRPGGVLVAVCLNGPRQQEKLLPFSDVREELPRGTFAYTDVPT
MIIRLRA
>gi|223713502|gb|ACDM01000096.1| GENE    19     15529  -     16890    899    453 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_E0031 NR:ns ## KEGG: EcE24377A_E0031 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1     453       1     453     453     850   99.0  0
MTLAAITMTAPEAASPVQMYRATYSPDDNKLRLYAASRLDPETYKKVHDAGFRWAPKQAL
FVAPAWTPGREDVLLSLAGEIEDEDSTLAERQEARAERFTGYSGKRASESAQALDEVERL
AAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFERAEYWEERARSALLHAKYKER
PDVRWRRIKKIEADLRKAEKTIAQSQKYLTMWRAESLDLNMAKLISSHDHISACFPLDTY
PRPAEKSQYEGSRSLWSALDDDIITTEQAREIAIRCHERQIQHQQRWVNHYQNRLIYERA
MLDESGGVVTRTQDFEPGGQVFSRGEWLTIIRVNKSNGAVSSVTTPNYSFLGYSGTMKVT
PDRITDYKAPSAEEAAVASQAAKRPPVVNYPGEGFREMTKAQWAALPRDCKAVRSVAETE
DHGAYRYRRTMDNNFRLVNVYITDMKITEIPQK
>gi|223713502|gb|ACDM01000096.1| GENE    20     16942  -     17172    132     76 aa, chain - ## HITS:1  COG:no KEGG:EcSMS35_A0060 NR:ns ## KEGG: EcSMS35_A0060 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      76       1      76      76     128  100.0  7e-29
MTVSIVSPSAAAVKPRRHPRFRREDIPAPEIDPVLKAFGRHIARSFHRGRGVHIPAMKNT
AFGQVLRTLELKRAFN
>gi|223713502|gb|ACDM01000096.1| GENE    21     18008  -     18985    801    325 aa, chain - ## HITS:1  COG:ECs3848 KEGG:ns NR:ns ## COG: ECs3848 COG3436 # Protein_GI_number: 15833102 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     273     194     468     482     545   95.0  1e-155
MAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRPLYDELKHYVLMPGKVHAD
DTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYSPDRKGIHPQQHLADYRGI
LQADAYAGYNALYESGQVTEAACMAHARRKIHDVHVRHPTTVTGEALRRIGALYAIESEI
CGSPAEERLAVRKARTVPLMQSLYEWLQGQMSTLSRHSDTAKAFTYLLKQWDALNEYCRN
GWVEIDNNLCENALRVVALGRRNYMFFGSDGGGESAAVMYSLIGSCKLNGIEPETWLRHV
ISVINTWPANRVKELLPWNVTLSVN
>gi|223713502|gb|ACDM01000096.1| GENE    22     19310  -     19570    214     86 aa, chain - ## HITS:1  COG:ECs3848 KEGG:ns NR:ns ## COG: ECs3848 COG3436 # Protein_GI_number: 15833102 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 3      86       1      84     482     152   98.0  1e-37
MGMNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGRSSEK
SREKIEKKIARAETRITELQNRLGEA
>gi|223713502|gb|ACDM01000096.1| GENE    23     19584  -     19931    117    115 aa, chain - ## HITS:1  COG:ECs3847 KEGG:ns NR:ns ## COG: ECs3847 COG3436 # Protein_GI_number: 15833101 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     115       1     115     115     223   96.0  6e-59
MITLPTGTRIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRNGKMVKILWAD
RDGLCLFAKRLERGRFVWPVTREGKVHLTPALLSMLLEGIAWQHPKRTELPGIRI
>gi|223713502|gb|ACDM01000096.1| GENE    24     19928  -     20605    354    225 aa, chain - ## HITS:1  COG:Z4315_2 KEGG:ns NR:ns ## COG: Z4315_2 COG2963 # Protein_GI_number: 15803508 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 92     225       1     134     134     211   76.0  8e-55
MNSQTAKDITGFRSYLPDALRLRFDEQLSVRAIALQLGLSHSTIHNLFQRFNASGITWPL
PESLSVAQLDAILYANRKKELPDDPQISESTWRKERRTSYSREFKIRLVKQALQPGAVVA
RIAREHNINDNLLFNWKRLYEEGLLNDEDLQECQAVPVAITETPDPVKPVTNPFWRNKSD
ESQNDTTVDSPQCELHLKSGVVKLFAPLTPELLRVLIREMKGGIR
>gi|223713502|gb|ACDM01000096.1| GENE    25     20822  -     21814    307    330 aa, chain - ## HITS:1  COG:no KEGG:ROD_p1471 NR:ns ## KEGG: ROD_p1471 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1     330       1     330     330     671   96.0  0
MPVQDVIPPYEQMYLLNQQLICNADQLKHAVITVGGQAVQYWISYYHAQYGDRLPDERLT
TSVDCDYSARKDDIAAIAKTLNVKTWENKDGQPPSLAQFMLIDQDTHDIKRDDGRLFAVP
DAPDEPNVVDIIDRPGGFDRSDFLGEKLYLHTAPFYVEATGPSMPEMNEKVRVLNPIACM
RSRFSNLIALRRDAEIEIARINALKIPCYFFLIEQFDEQPFKVARGIFMDLWRLANDESC
LRHQTFWHSWQGPLLEGQQSNNITLVDVLEGVHAFLEGHLDDFEIPEAFVTKELPIKLAQ
LRERWERYVILNAEWAARGRRGFERNHRDD
>gi|223713502|gb|ACDM01000096.1| GENE    26     21863  -     22018    169     51 aa, chain - ## HITS:1  COG:no KEGG:B21_03477 NR:ns ## KEGG: B21_03477 # Name: ybl167 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1      51       1      51      51      63  100.0  2e-09
MSPAQAKQKQHERYEAVAVQVLRGRAGYKPAVKSRFSKSANSKFSHTIAFA
>gi|223713502|gb|ACDM01000096.1| GENE    27     22349  -     22591     77     80 aa, chain - ## HITS:0  COG:no KEGG:no NR:no
MYPKSNIGQLVSVIIKNRFNRHINGTVFICLIIYDISDSDFTNVRFRSIGLQTPEFIRTS
YGYVTGSDFSRQTAISLLSG
>gi|223713502|gb|ACDM01000096.1| GENE    28     22596  -     23153    538    185 aa, chain + ## HITS:1  COG:YPCD1.91 KEGG:ns NR:ns ## COG: YPCD1.91 COG1961 # Protein_GI_number: 16082774 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Yersinia pestis # 1     183       1     183     183     254   80.0  6e-68
MRLFGYARVSTSQQSLDIQIKALKDAGVKANRIFTDKASGSSTDRDGLDLLRVKVEKGDV
ILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERR
RILERTNEGRQDAKMKGIKFGRKRSVDRGSVLALHQKGTGATEIARQLSIARSTVYKILE
EGKAE
>gi|223713502|gb|ACDM01000096.1| GENE    29     23253  -     23654    293    133 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|218511194|ref|YP_002415652.1| ## NR: gi|218511194|ref|YP_002415652.1| hypothetical protein pEC55989_0046 [Escherichia coli 55989] # 1     133       1     133     133     259  100.0  4e-68
MSRAELLRDIEAIISGAGFELSNSEAPMTFKKNVSYPGLIAGKNEIAHFLLFTNTGTVQI
TAKWQEVSGTAIEKLGHTVLDAQHTQHQSYFVVCGGGKLVTRAIDYLNAHRTLAPRLRAM
QVKELESALEEII
>gi|223713502|gb|ACDM01000096.1| GENE    30     23863  -     25215    375    450 aa, chain - ## HITS:1  COG:BH0039 KEGG:ns NR:ns ## COG: BH0039 COG3344 # Protein_GI_number: 15612602 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 43     450       1     408     418     409   53.0  1e-114
MQQKTYRDPDAGRRGEAPDAGSQGAETVQAPTTRESPSSTAWLMEAICEPVNLRHALKRV
KANKGAAGADGMSVSELPDYLRHHWPELKAQLLSGSYRPSPVRRVTIPKPGGGERLLGIP
TVVDRFIQQAMMQVLQAQWDATFSDSSYGFRPGRSAHQAVKQAQKYIESGYSWGVDLDLE
KFFDRVNHDVLMSRIAKRVSDKRVLSLIRGYLNAGVMEAGLVMPVTEGTPQGGPLSPLLS
NLLLDDFDKELEKRGLKFARYADDCNVYVKSERAGNRMMAGLTHWLNRKLKLKLNAKKSA
VALPETRKFLGYSFRRGRKVWCVVSPESVKRFKTRIRELTGRNTGKSLEQLIEPLKRYLT
GWKSYYGLNQWQTLMRDLNRWIRRRLRSVLWKQWKTGSKRFKELRRRGVSKDLAAQTVGS
CHKQWRISCSPALSIALPNRLFVRLGLPEL
>gi|223713502|gb|ACDM01000096.1| GENE    31     25691  -     25888    174     65 aa, chain - ## HITS:1  COG:yi21 KEGG:ns NR:ns ## COG: yi21 COG2963 # Protein_GI_number: 16132093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1      54      16      69     136      96   96.0  1e-20
MIDVLGPEKRRRRTTQEKSAIVQQSFEPGMTASLVARQHGVAASQLFLWRKQYQGAEGQW
NENVR
>gi|223713502|gb|ACDM01000096.1| GENE    32     26783  -     27994     91    403 aa, chain - ## HITS:1  COG:no KEGG:EcE24377A_F0081 NR:ns ## KEGG: EcE24377A_F0081 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 16     403      36     428     428     214   34.0  4e-54
MKFAIVLLYFFAYYLAARKRRVSLFFTILLYSIIFSGMYFSSGFLEYYGSSNLYLSFGLL
CFNMITLVIYGFLSSYGVLGACLHALSLTSLSAFGMFIPLNPLIVLYYDFPDILPRTDIP
VLNLLILNLIPAVTFSLKISFFLRSLMLLLFPLIWKTPVNITHPPLNIVIVQVGLYFKKV
GVRGNFYTDLNEFVRNKKVDLVILSENVFFGYKNDYIKERTKHLLKQLKDNRFHYKYGIL
MNLYGYQDINNVVSAFWHKEEFLLHQKSKLIPFFEKKSFYNSPEPSTSPFLYYKKKYNEQ
DILDFNNIKMSIHICYEGLFPEGESRRKDISIVQSDYSWLSDNHKYDNTLINGSILSKFS
VSPNTPLINIQNYGGTVLIDKNWKIDMDLFNRSKTEPFLFTQI
>gi|223713502|gb|ACDM01000096.1| GENE    33     28006  -     28635    214    209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1     199       1     204     245 87  27 2e-16
MIRVKIHKKPIENRTILNNSTIEIKEGSFNIITGPSGVGKTSLLNIIGLLDNAFVGEYEF
FGKKVEIKDNSITTYIRRKYFGFIFQDSLINVKQNVSRNILCSVDSQNIIAARERINDIL
VSVGLSNINNNVSFLSGGEKQRLALARALIKKPSILLADEPTASLDIKNKKLVMNILSEY
NNQGGTVVMVTHDLELIDENMTLIQLLNT
>gi|223713502|gb|ACDM01000096.1| GENE    34     28109  -     28318    117     69 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MFITNFLFFISRLAVGSSAKSILGFFINALASASLCFSPPERNDTLLLIFDNPTDTKISL
ILSLAAIMF
>gi|223713502|gb|ACDM01000096.1| GENE    35     28628  -     29449    259    273 aa, chain - ## HITS:1  COG:no KEGG:ROD_03471 NR:ns ## KEGG: ROD_03471 # Name: aatB # Def: AatB, putative membrane protein # Organism: C.rodentium # Pathway: not_defined # 1     273       1     270     270     187   42.0  2e-46
MKQKMNFRKLDMRLNIIVYIIIFFCSTFPIQGKCDNYYGVLHGSKNVKYKSPFAGVVILE
DMIEGNVVTVERKLFSVLNHEYTAKKDIVAMKRDMEEKKLARLKGVKTHSTSMFSKGLIS
RESLHDIDEKISNTELTIMGLDIESKNLEQLLKLSSPFLHTPFIIRNIFVTNEQYVNAGD
DIMSVELLDNFYIDVKFDPVSITGNIRDKRIRYRSLVNSLMGTATVVKNIRASGESTQGE
DTSGLRSITLLIDGDRNELSNLLDTAFEIIIDD
>gi|223713502|gb|ACDM01000096.1| GENE    36     29346  -     30413    372    355 aa, chain - ## HITS:1  COG:no KEGG:ROD_03461 NR:ns ## KEGG: ROD_03461 # Name: aatA # Def: AatA, outer membrane protein # Organism: C.rodentium # Pathway: not_defined # 2     345      58     401     402     179   32.0  2e-43
MLPDINIGLGQYINNNQWFSSITDSHFYLSLSYNLLSAYEAKMQNNKLDIANYLKYIEML
SERNNYIINLFSEIINYKIKKSHLMLMLERYRKLNKEYEIAKRKMSIGLISALDVEMIYN
ILQKIRFDIDVLEEEESLLSDKISREYHVPESAIPDITYHKLKECKTADFYTLLAENKKL
KIKAADIDNDIRKLSEIPSFYLSFGLTPKQGGALGNMSLRKMDYSASLGISFPLMGLFSS
SVNQKEKIISMSRTRNESLKENIKLDLLEKEIRQKIDRLEKNLAMMKNELTLKKRKVEYI
NYRLKNGQDDVITYLSSVENLHETENEFQKIGYEIEYYSLYHYFLLQHISNTGKM
>gi|223713502|gb|ACDM01000096.1| GENE    37     30957  -     31430   -168    157 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MSNENRSNTLSTASLAFKDVTISNFLISLSYKTLFTLFISLFVTMLSRKILTALTLLSSF
ILNIVSSGMKMCSSDWFAFNPRLSRKSVFEFNLTPIILNGTPLINICFLLKNGLDSLTIA
TLPLYLSFKSPEYSVFNPSLSIPLTENSSPEKGVSLT
>gi|223713502|gb|ACDM01000096.1| GENE    38     32091  -     32339    121     82 aa, chain + ## HITS:1  COG:Z1199 KEGG:ns NR:ns ## COG: Z1199 COG2963 # Protein_GI_number: 15800720 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1      66       1      68     108     115   82.0  1e-26
MTKNTRFSPEVSHRAIRMVLESQGEYDSQWAVICSIAPKIGCTPETLHVWVRQHERDRVG
GGITPAVLSHHRTCGSAYGGLC
>gi|223713502|gb|ACDM01000096.1| GENE    39     32482  -     32718    112     78 aa, chain + ## HITS:1  COG:ECs1337 KEGG:ns NR:ns ## COG: ECs1337 COG2963 # Protein_GI_number: 15830591 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      69      22      90     141     100   75.0  7e-22
MVKLALQPRDSVARIAREHDINDNLLFKWLRIWLIKGRISRRLPLTNSSGIGVELLPVEM
TLDERPYPVFTRGNYEDQ
>gi|223713502|gb|ACDM01000096.1| GENE    40     32690  -     33439    438    249 aa, chain - ## HITS:1  COG:NMB0700 KEGG:ns NR:ns ## COG: NMB0700 COG3468 # Protein_GI_number: 15676598 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 8     192     351     536    1815     191   56.0  1e-48
MHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGGGYLQFAGDYRGSALNGQTWMGGGIIT
DKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNIGGLKVGDGTVILNQQADADGKVQAF
SSVDIASGRPTVVLSDSQQVNPDNISWGYRGGRLDLNGNNLTFTRLQAADYGAIITNNSE
KKSTVTLDFQTLKASDINVPVNTVSIFGGKGTPGDLYYDTSTGQYYILKVQQFMHTVRRL
VIDLHNYLA
>gi|223713502|gb|ACDM01000096.1| GENE    41     33203  -     33661    101    152 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MQVITGNSVHLPQNVGSFIGDNPAPHPCLAVQGGPPVIAGKLQIPAPLINGILQNDLAII
AGEQEVFSCVQVISFLSMHIPGRVSLSQCAGAISCIIFPLQYSLTRGVGYGFVKIILRLL
TKEILSGDDSVISIVSSRGKYANQYPFFCRES
>gi|223713502|gb|ACDM01000096.1| GENE    42     33777  -     34172    281    131 aa, chain - ## HITS:1  COG:no KEGG:CP0070 NR:ns ## KEGG: CP0070 # Name: sepA # Def: extracellular serine protease SepA # Organism: S.flexneri # Pathway: not_defined # 1     110     103     212    1364     191   90.0  9e-48
MTDFSSATITTGSLPPGNHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTTVGTNNNSGLD
IKTRRLSKLVTEVAPAEVSDVGAVSGAYQAGGRFTAFYRLGGGCSTSKTKMVIAPMCIPM
ADFLLGEPSAR
>gi|223713502|gb|ACDM01000096.1| GENE    43     34116  -     34340    165     74 aa, chain + ## HITS:0  COG:no KEGG:no NR:no
MVSRRQATGSNSGTTEISHRGFIKFTDQMALLAVNENIRGPRRKLTFILGKVAEYLIRDL
CTDRCRQSWSCRRK
>gi|223713502|gb|ACDM01000096.1| GENE    44     36006  -     36206     69     66 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|218511215|ref|YP_002415673.1| ## NR: gi|218511215|ref|YP_002415673.1| hypothetical protein pEC55989_0067 [Escherichia coli 55989] # 1      66       7      72      72     115  100.0  1e-24
MKAGKNFHSLSKQAASAEKNMDLALAFELWKLASLFCKKIENIEWCMNRAMFCEAYISRN
QDGQKL
>gi|223713502|gb|ACDM01000096.1| GENE    45     36937  -     37287     82    116 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|218511217|ref|YP_002415675.1| ## NR: gi|218511217|ref|YP_002415675.1| 14 kDa aggregative adherence fimbriae I protein (Fragment) (modular protein) [Escherichia coli 55989] # 1     116       1     116     116     211  100.0  2e-53
MKKIKFVIFSGILGISLNAFAGGSGWNADNVDPSQCIKLSGVQYTYNSGVPVCMQGLNEG
KVRGVSVSGVFYYKDGTTSNFKGVVTPSTPVNTNQDINKTNKVGVQKYSALTEWVK
>gi|223713502|gb|ACDM01000096.1| GENE    46     38392  -     38925     26    177 aa, chain + ## HITS:1  COG:ECs4395 KEGG:ns NR:ns ## COG: ECs4395 COG2207 # Protein_GI_number: 15833649 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 29     170      93     233     242      84   36.0  9e-17
MIIYGISKVDACSCPNWSKGIIVADADDSVLDTFKSIDHNDDSRITSDLIYLISKIENNR
KIIESIYISAVSFFSDKVRNTIEKDLSKRWTLAIIADEFNVSEITIRKRLESEYITFNQI
LMQSRMSKAALLLLDNSYQISQISNMIGFSSTSYFIRLFVKHFGITPKQFLTYFKSQ
>gi|223713502|gb|ACDM01000096.1| GENE    47     39026  -     39430    154    134 aa, chain + ## HITS:1  COG:YPO0981 KEGG:ns NR:ns ## COG: YPO0981 COG3677 # Protein_GI_number: 16121285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1      65       1      65      87      98   64.0  3e-21
MSSVNIHCPRCQSAQVYRHGQNPKGRDRFRYRDCHRVFQLTYTYQARKPGMKELITEMAF
NEPGMMLARMARLHGIQPCQLFKWKKQYLEGTLNAVAAGEDVVPASELAAAIKQINQVQR
LLGKNLWSPPFLQH
>gi|223713502|gb|ACDM01000096.1| GENE    48     39673  -     40497    251    274 aa, chain - ## HITS:1  COG:PA0445 KEGG:ns NR:ns ## COG: PA0445 COG3547 # Protein_GI_number: 15595642 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Pseudomonas aeruginosa # 2     272      61     335     338     200   44.0  2e-51
MARRIADLGHEAKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEAQQAMR
ALHRVRESLVSDKVKTTNQMHAFLLEFGISMPTGVAVVKRLSTVLAENELPPYLAQLLMR
LHAHYIYLVGQITELEIALEQELSRDEVGQRLQTIPGIGPITASVLSSQLGDGKQYSCSR
DFAASTGLVPRQYSTGGKNTLLGISKRGDKNLRRLLVQCARSFIQRIENQSGRLADWVRA
LLARKHSSVVCCALANKLARIAWAITTQQTVFER
>gi|223713502|gb|ACDM01000096.1| GENE    49     40524  -     40691    102     55 aa, chain - ## HITS:1  COG:no KEGG:XBJ1_2220 NR:ns ## KEGG: XBJ1_2220 # Name: not_defined # Def: transposase # Organism: X.bovienii # Pathway: not_defined # 6      51       1      46     334      72   67.0  5e-12
MEKTIMQNITLIGIDLGKHSFHIHCQDKSGKVLLRKSLPVPNLLSFWQAVPRLPL
>gi|223713502|gb|ACDM01000096.1| GENE    50     40728  -     40964    110     78 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256026263|ref|ZP_05440128.1| ## NR: gi|256026263|ref|ZP_05440128.1| hypothetical protein E4_23031 [Escherichia sp. 4_1_40B] # 9      78       1      70      70     129  100.0  9e-29
MVGTISLTMEVEILREAVEYAQSQMDNVCVLVIFGQGIASVSRVLGDRAGGGIIPAVLSL
FVHRKPPARLGVPESFQL
>gi|223713502|gb|ACDM01000096.1| GENE    51     41714  -     41989    189     91 aa, chain + ## HITS:1  COG:ECs1381 KEGG:ns NR:ns ## COG: ECs1381 COG2963 # Protein_GI_number: 15830635 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      91      18     108     108     157   95.0  5e-39
MVLESQGEYDSQWAVICSIAPKIGCTPEILRVWVRQHERDTEGGDGGLTTAERQRLKELE
RENRELRRSNDILRQASAYFAKAEFDRLWKK
>gi|223713502|gb|ACDM01000096.1| GENE    52     42263  -     42415    112     50 aa, chain + ## HITS:1  COG:no KEGG:no NR:gi|256026268|ref|ZP_05440133.1| ## NR: gi|256026268|ref|ZP_05440133.1| hypothetical protein E4_23056 [Escherichia sp. 4_1_40B] # 1      50       1      50      50      76  100.0  6e-13
MIDIVTYVMNADFDNIIKIASDMDLSLIKDIVRETQEDINSNGPAWSSWS
>gi|223713502|gb|ACDM01000096.1| GENE    53     42918  -     43457    258    179 aa, chain - ## HITS:1  COG:SPBC106.15 KEGG:ns NR:ns ## COG: SPBC106.15 COG1443 # Protein_GI_number: 19111956 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Schizosaccharomyces pombe # 1     157      18     198     227      92   36.0  3e-19
MENVILIDHNDCETGIAEKLYTHKKGILHRAVSVYICNSDGKLLLQQRALGKYHSPGLWS
NTSCTHPFPGESNLSAANRRLREEMGIECPLSKLLKIYYNVYVGGDLTEHEIAHIFYGIS
DDEPDLNSLEAMSYKYVSLTELSSEIKFNNDAFSRWFVYCFPYIKNAFLNESNYTNLLI
>gi|223713502|gb|ACDM01000096.1| GENE    54     43461  -     44489    364    342 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256026270|ref|ZP_05440135.1| ## NR: gi|256026270|ref|ZP_05440135.1| hypothetical protein E4_23066 [Escherichia sp. 4_1_40B] # 1     342       1     342     342     633  100.0  1e-180
MKVVSDSFNDMHKRRYFNDTMDIINYNRKTIRYTDIIFYFRTLKKIRLKYPFKELESLFE
PLNVYPFYYFMPFLFISDLHDKGQYIERIRYVGIISTLIARRAILTDLFVDEQYEQLISR
NMGDLKKEYLGYYLQIIDVEINNIASKIFIEPSSFYAFYNRRFNEYVNTMLMEKDISPLI
GMDEGAFKKYAVGKSILHLLVSDMVLHIIKKQELTHQFDNMMKSFIMYLTLQDDVLDIME
DIQKQQPSHFYPWISDGKIIESIDENVEKAVLLKFYLGGGIERCEDLINKYVEDIITAVK
KINHPLKSWLEVIERMSLKTKDKLDSFKAVRDELHFFLSQQG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:39:50 2011
 Seq name: gi|223713501|gb|ACDM01000097.1| Escherichia sp. 4_1_40B cont1.97, whole genome shotgun sequence 
 Length of sequence - 4712 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 2, operones - 2 average op.length -  2.5
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     2     1 Op  2     .       -    CDS        411 -       926    175  ## gi|260279121|dbj|BAI44131.1| adhesin protein
                               -    Prom       972 -      1031    6.4 
     3     2 Op  1     .       -    CDS       1101 -      1538     81  ## gi|256026273|ref|ZP_05440138.1| Protein Agg3B, putative invasin
     4     2 Op  2  10/0.000   -    CDS       1555 -      2094    187  ## COG3188 P pilus assembly protein, porin PapC
                               -    Prom      2133 -      2192    2.7 
     5     2 Op  3     .       -    CDS       4159 -      4446    188  ## COG3121 P pilus assembly protein, chaperone PapD
                               -    Prom      4514 -      4573    4.7 
Predicted protein(s)
>gi|223713501|gb|ACDM01000097.1| GENE     1        25  -       330    190    101 aa, chain - ## HITS:1  COG:ECs2225 KEGG:ns NR:ns ## COG: ECs2225 COG3328 # Protein_GI_number: 15831479 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      55       1      55     140     100   89.0  9e-22
MDEKQLQALANELAKNLKTPEDLSQFDRLLKKLCVEAALNAEMTHHLGYEKNQSRSLFKI
LCKCLVSEVTVQAVTELDNKAAHCHSPVLQRHRPFPGRRLD
>gi|223713501|gb|ACDM01000097.1| GENE     2       411  -       926    175    171 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|260279121|dbj|BAI44131.1| ## NR: gi|260279121|dbj|BAI44131.1| adhesin protein [Escherichia coli O111:H21] # 1     171       1     171     171     257   88.0  2e-67
MKKISIIASLVFSLYSGLSIAANPTPSSLTSKATGKSIVSSTGTITISNSCSLSISSPNP
VTYTIPTDRADKYINFQLDVPDPRCKALGGTVYFWGADAKDGKLVMVKGNDRYTLMTTYG
GSVQQKLGAGYGYYHVSKNTTPQTISGVVSRNGPYKPGQYTVELTGFFSLN
>gi|223713501|gb|ACDM01000097.1| GENE     3      1101  -      1538     81    145 aa, chain - ## HITS:1  COG:no KEGG:no NR:gi|256026273|ref|ZP_05440138.1| ## NR: gi|256026273|ref|ZP_05440138.1| Protein Agg3B, putative invasin [Escherichia sp. 4_1_40B] # 1     145       1     145     145     286  100.0  4e-76
MKKGIVSLSCGACLMVVSSLSAAAEINLVSHRNTESQLRDGMKLATGRMTCRETHTGFHV
WMNARQDGGRPEHYIVQNSKGIQHELRVRIGGNGWISSFGEAQRGIFRLGKEEQAIFDVI
VDGDQKVIPGEYMLSISGECIVLGR
>gi|223713501|gb|ACDM01000097.1| GENE     4      1555  -      2094    187    179 aa, chain - ## HITS:1  COG:STM0301 KEGG:ns NR:ns ## COG: STM0301 COG3188 # Protein_GI_number: 16763684 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 1     178     662     835     836     180   50.0  1e-45
MHSEGITFGQRFGDTMALIAAPGVRGASIGGWPGVSTDSRGYALVSYITPYQENIITLDP
TTFPENAEVLQTDTRVVPTKGAVVRAKFKTRVGNRAVVRLARADGTPLPFGTVVTLEGKT
EVSNSTGVVDDKGMVYLSGLSEAGKLKAQWGMNSHCYANYRLPVKKGPAGLYLTSAVCI
>gi|223713501|gb|ACDM01000097.1| GENE     5      4159  -      4446    188     95 aa, chain - ## HITS:1  COG:STM0300 KEGG:ns NR:ns ## COG: STM0300 COG3121 # Protein_GI_number: 16763683 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Salmonella typhimurium LT2 # 1      89     144     232     237      91   44.0  3e-19
MFVRPSSVKGHPEDVAGEVKWQRVNNKLKGVNPTPFYINLSELRVGGEEISEHHYIAPFS
SFEYPIPVSKSSKVQWKIVTDYGGVSEFFETDINL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:08 2011
 Seq name: gi|223713500|gb|ACDM01000098.1| Escherichia sp. 4_1_40B cont1.98, whole genome shotgun sequence 
 Length of sequence - 9710 bp
 Number of predicted genes - 15, with homology - 15
 Number of transcription units - 7, operones - 6 average op.length -  2.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1  11/0.000   +    CDS        618 -       809    141  ## COG2801 Transposase and inactivated derivatives
     2     1 Op  2     .       +    CDS        853 -      1230    320  ## COG2801 Transposase and inactivated derivatives
     3     2 Tu  1     .       -    CDS       1302 -      2228    652  ## ECO26_p1-53 conserved predicted protein
                               -    Prom      2424 -      2483    4.7 
                               +    Prom      2385 -      2444    6.1 
     4     3 Op  1     .       +    CDS       2479 -      2727    342  ## SeHA_A0038 protein ImpC
     5     3 Op  2   4/0.000   +    CDS       2724 -      3161    242  ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
     6     3 Op  3     .       +    CDS       3161 -      4405    483  ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair
                               +    Term      4476 -      4523   -0.9 
     7     4 Op  1     .       -    CDS       4437 -      4829    163  ## E2348_P1_101 plasmid stability protein
     8     4 Op  2     .       -    CDS       4834 -      5805    545  ## p1ECUMN_0151 plasmid segregation protein
                               -    Prom      5959 -      6018    5.1 
                               +    Prom      6309 -      6368    2.2 
     9     5 Op  1     .       +    CDS       6415 -      6678    249  ## p1ECUMN_0152 hypothetical protein
    10     5 Op  2     .       +    CDS       6672 -      6947    210  ## p1ECUMN_0153 conserved hypothetical protein, putative helix-turn-helix protein
                               +    Term      7017 -      7052    1.0 
                               -    Term      6925 -      6970   -0.8 
    11     6 Op  1     .       -    CDS       7085 -      7894    376  ## COG0582 Integrase
    12     6 Op  2     .       -    CDS       7895 -      8200    352  ## ECSE_P2-0011 plasmid maintenance protein CcdB
    13     6 Op  3     .       -    CDS       8202 -      8420    294  ## COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid
                               -    Prom      8527 -      8586   10.1 
                               +    Prom      8885 -      8944    4.3 
    14     7 Op  1     .       +    CDS       9014 -      9244    220  ## KPN_pKPN4p07074 virulence-associated protein
    15     7 Op  2     .       +    CDS       9298 -      9669    413  ## COG1487 Predicted nucleic acid-binding protein, contains PIN domain
Predicted protein(s)
>gi|223713500|gb|ACDM01000098.1| GENE     1       618  -       809    141     63 aa, chain + ## HITS:1  COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1      58      91     148     296     114   96.0  5e-26
MAVMGLAGVLRGKKVRTTVSRKTVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYSG
VHH
>gi|223713500|gb|ACDM01000098.1| GENE     2       853  -      1230    320    125 aa, chain + ## HITS:1  COG:ECs1666 KEGG:ns NR:ns ## COG: ECs1666 COG2801 # Protein_GI_number: 15830920 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     121     169     289     296     224   96.0  3e-59
METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAKLLASTGSTGDSYDNA
MAESINGLYKAEVIHRKSWKKRAEVELATLTWVDWYNNRRLLERLSHTPPAEAEKAYYAS
IHWKR
>gi|223713500|gb|ACDM01000098.1| GENE     3      1302  -      2228    652    308 aa, chain - ## HITS:1  COG:no KEGG:ECO26_p1-53 NR:ns ## KEGG: ECO26_p1-53 # Name: not_defined # Def: conserved predicted protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1     308       1     308     308     603   96.0  1e-171
MPNWCSNRMYFSGEPAQIAEIKRLASGAVTPLYRRATNEGIQLFLAGSAGLLQTTEDVRF
EPCPGLTAAGRGVVSPENIAFTRWLKHLQDGVLLDEQNCLMLHELWLQSGTGQRRWEGLP
DDVRDTITVLFTAKRGDWCGFWSNEDVSVWWNRLCDNVLSEKTMPFDLLTVLPTRLDVEV
NGFNGGVLNGVPSAYHWYTEQYGVKWPVGYEVNISSQGDNFIQVDFDTPWCQPESDVIAE
LSRRFSCTLEHWYAEQGCNFCGWQLYERGEFVDVLWGELEWSSPTDDDELPEVTGPAWIV
YKVAHYGG
>gi|223713500|gb|ACDM01000098.1| GENE     4      2479  -      2727    342     82 aa, chain + ## HITS:1  COG:no KEGG:SeHA_A0038 NR:ns ## KEGG: SeHA_A0038 # Name: not_defined # Def: protein ImpC # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1      82       1      82      82     148  100.0  6e-35
MIRIEILFDRQSTKNLKSGTLQALQNEIEQRLKPHYPEIWLRIDQGSAPSVSVTGARNDK
DKERILSLLEEIWQDDSWLPAA
>gi|223713500|gb|ACDM01000098.1| GENE     5      2724  -      3161    242    145 aa, chain + ## HITS:1  COG:PSLT055 KEGG:ns NR:ns ## COG: PSLT055 COG1974 # Protein_GI_number: 17233502 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Salmonella typhimurium LT2 # 20     142      17     137     140     171   67.0  6e-43
MSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRA
SGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRLTLEPVSDSPEF
RTLYPENICIFGVVTHVIHRTRELR
>gi|223713500|gb|ACDM01000098.1| GENE     6      3161  -      4405    483    414 aa, chain + ## HITS:1  COG:PSLT054 KEGG:ns NR:ns ## COG: PSLT054 COG0389 # Protein_GI_number: 17233501 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Salmonella typhimurium LT2 # 1     414       1     414     424     620   71.0  1e-177
MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQ
TRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFG
HQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQ
PVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEE
APPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAV
KEPCYSNAAVEKLSLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPG
LFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKQEMLSPSYTTQ
>gi|223713500|gb|ACDM01000098.1| GENE     7      4437  -      4829    163    130 aa, chain - ## HITS:1  COG:no KEGG:E2348_P1_101 NR:ns ## KEGG: E2348_P1_101 # Name: stbB # Def: plasmid stability protein # Organism: E.coli_0127 # Pathway: not_defined # 1     130       1     130     130     230   99.0  9e-60
MDDERKRKKYTLYLHPEKAADFQTLEAIESVPRSERGELFRNAFISGMALHQLDPRLPVL
LTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVLTELGASQSAEKMPPSATDSVQEAMN
DVRLKMKKLF
>gi|223713500|gb|ACDM01000098.1| GENE     8      4834  -      5805    545    323 aa, chain - ## HITS:1  COG:no KEGG:p1ECUMN_0151 NR:ns ## KEGG: p1ECUMN_0151 # Name: parM # Def: plasmid segregation protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1     323       1     323     323     648   99.0  0
MNVYCDDGSTTIKLAWNDNGEICKSLSQNSFRHGWKVDGLGIRQTFNYELDGKKYTYDEV
SNQSILTTHIEYQYTDVNLLAVHHALLNSGLAPQPVSLTVTLPISEFYTKECQKNELNIQ
RKIENLMRPIRLNKGDVFTIEHVDVMPESLPAVFSRLVVDKVGQFEKSLVVDIGGTTLDV
GVIVGQFDSVSAIHGNSGIGVSSVTKAAMSALRMASSDTSFLVADELIKRRNDPDFVRQV
INDETKTDLVLNTIEGAIASLGEQVVNELGDFHHVNRVYVVGGGAPLIYDSIKTAWHHLG
QKVVMMESPQTALVEAIAAFKEE
>gi|223713500|gb|ACDM01000098.1| GENE     9      6415  -      6678    249     87 aa, chain + ## HITS:1  COG:no KEGG:p1ECUMN_0152 NR:ns ## KEGG: p1ECUMN_0152 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      87     128     214     214     186  100.0  3e-46
MRNLNPELKVYCLQSMATTNPVLRGNERKEFLEYLEEFPTIQVLDSVICFRKVYRDCMSN
GTGVVETNNTAAKAEIEHLMNEVFGPW
>gi|223713500|gb|ACDM01000098.1| GENE    10      6672  -      6947    210     91 aa, chain + ## HITS:1  COG:no KEGG:p1ECUMN_0153 NR:ns ## KEGG: p1ECUMN_0153 # Name: not_defined # Def: conserved hypothetical protein, putative helix-turn-helix protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1      91       1      91      91     144  100.0  1e-33
MVKKPSQQALNRAAVTVEQAEALAQRLADKPYGAPEKPEPEKQCRTTISLGESMLVTIED
LALRNKRNGKDPKNVSAIVRVALEQYLKTLT
>gi|223713500|gb|ACDM01000098.1| GENE    11      7085  -      7894    376    269 aa, chain - ## HITS:1  COG:PSLT031 KEGG:ns NR:ns ## COG: PSLT031 COG0582 # Protein_GI_number: 17233417 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 10     265       2     257     260     386   84.0  1e-107
MSGSVIHSQSAARVPAVYSAGQSPQLPVVIDYPAALALRQMSMVHDELPKYLLAPEVSAL
LHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAG
RTPAGQQTHRLVPLSDSWYVSQLQTMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRTW
IGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV
FALDVAARHRVQFSMPESDAVTMLKNRHA
>gi|223713500|gb|ACDM01000098.1| GENE    12      7895  -      8200    352    101 aa, chain - ## HITS:1  COG:no KEGG:ECSE_P2-0011 NR:ns ## KEGG: ECSE_P2-0011 # Name: not_defined # Def: plasmid maintenance protein CcdB # Organism: E.coli_SE11 # Pathway: not_defined # 1     101      10     110     110     196  100.0  2e-49
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHVGDES
WRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI
>gi|223713500|gb|ACDM01000098.1| GENE    13      8202  -      8420    294     72 aa, chain - ## HITS:1  COG:PSLT027 KEGG:ns NR:ns ## COG: PSLT027 COG5302 # Protein_GI_number: 17233413 # Func_class: R General function prediction only # Function: Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid # Organism: Salmonella typhimurium LT2 # 1      72       1      72      72     110   90.0  7e-25
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIE
MNGSFADENRDW
>gi|223713500|gb|ACDM01000098.1| GENE    14      9014  -      9244    220     76 aa, chain + ## HITS:1  COG:no KEGG:KPN_pKPN4p07074 NR:ns ## KEGG: KPN_pKPN4p07074 # Name: vagC # Def: virulence-associated protein # Organism: K.pneumoniae # Pathway: not_defined # 1      76       1      76      76     129   92.0  4e-29
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWSSFAALEKADADF
MAEREDIVSDEGRFDL
>gi|223713500|gb|ACDM01000098.1| GENE    15      9298  -      9669    413    123 aa, chain + ## HITS:1  COG:PSLT106 KEGG:ns NR:ns ## COG: PSLT106 COG1487 # Protein_GI_number: 17233504 # Func_class: R General function prediction only # Function: Predicted nucleic acid-binding protein, contains PIN domain # Organism: Salmonella typhimurium LT2 # 1     121      15     131     132      90   40.0  6e-19
MREQPAAVIKRLEQAVLRNHRIVVSAITYAEMRFGATGPKASPRHIALVDAFCARLDAIL
PWDRAAVDATTEIKMALRLAGTPIVPNDTAIAGHAIAAGAILVTNNTREFERVPDLVLED
WVK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:30 2011
 Seq name: gi|223713499|gb|ACDM01000099.1| Escherichia sp. 4_1_40B cont1.99, whole genome shotgun sequence 
 Length of sequence - 4317 bp
 Number of predicted genes - 5, with homology - 5
 Number of transcription units - 4, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       214 -       273    2.8 
     1     1 Op  1   6/1.000   +    CDS        296 -      1324    819  ## COG0812 UDP-N-acetylmuramate dehydrogenase
     2     1 Op  2     .       +    CDS       1321 -      2286    802  ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase
                               -    Term      2279 -      2308    0.4 
     3     2 Tu  1     .       -    CDS       2315 -      3241    847  ## COG1072 Panthothenate kinase
                               -    Prom      3432 -      3491    3.2 
     4     3 Tu  1     .       +    CDS       3248 -      3442     70  ## EcSMS35_4423 hypothetical protein
                               +   TRNA       3627 -      3702   91.8  # Thr TGT 0 0
                               +   TRNA       3711 -      3795   67.6  # Tyr GTA 0 0
                               +   TRNA       3912 -      3986   64.8  # Gly TCC 0 0
                               +   TRNA       3993 -      4068   94.8  # Thr GGT 0 0
                               +    Prom      4013 -      4072   60.4 
     5     4 Tu  1     .       +    CDS       4183 -      4317    180  ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19
Predicted protein(s)
>gi|223713499|gb|ACDM01000099.1| GENE     1       296  -      1324    819    342 aa, chain + ## HITS:1  COG:murB KEGG:ns NR:ns ## COG: murB COG0812 # Protein_GI_number: 16131806 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Escherichia coli K12 # 1     342       1     342     342     716  100.0  0
MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRG
TVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQ
NIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRL
PKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAET
AKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKS
EDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS
>gi|223713499|gb|ACDM01000099.1| GENE     2      1321  -      2286    802    321 aa, chain + ## HITS:1  COG:ECs4900_2 KEGG:ns NR:ns ## COG: ECs4900_2 COG0340 # Protein_GI_number: 15834154 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Escherichia coli O157:H7 # 77     321       1     245     245     468   99.0  1e-132
MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL
PEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRG
RKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQ
DRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAA
MLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLL
EQDGIIKPWMGGEISLRSAEK
>gi|223713499|gb|ACDM01000099.1| GENE     3      2315  -      3241    847    308 aa, chain - ## HITS:1  COG:ZcoaA KEGG:ns NR:ns ## COG: ZcoaA COG1072 # Protein_GI_number: 15804568 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Escherichia coli O157:H7 EDL933 # 1     308       1     308     308     623  100.0  1e-178
MTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISS
NLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG
FLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDK
TVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR
EGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHA
VEEVRLRK
>gi|223713499|gb|ACDM01000099.1| GENE     4      3248  -      3442     70     64 aa, chain + ## HITS:1  COG:no KEGG:EcSMS35_4423 NR:ns ## KEGG: EcSMS35_4423 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1      64       1      64      64     120   98.0  2e-26
MLFYTHKHVSGGHSSIGKAIFAMARHSSVEWVNGQEGNTRWGGIIRKNLCQEAIVEKQCD
RYSI
>gi|223713499|gb|ACDM01000099.1| GENE     5      4183  -      4317    180     45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1      44       1      44     407 73  75 2e-13
MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:44 2011
 Seq name: gi|223713498|gb|ACDM01000100.1| Escherichia sp. 4_1_40B cont1.100, whole genome shotgun sequence 
 Length of sequence - 30732 bp
 Number of predicted genes - 27, with homology - 27
 Number of transcription units - 11, operones - 7 average op.length -  3.3
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       110 -       169    6.0 
     1     1 Op  1  46/0.000   +    CDS        249 -       632    482  ## COG0690 Preprotein translocase subunit SecE
     2     1 Op  2  45/0.000   +    CDS        634 -      1179    683  ## COG0250 Transcription antiterminator
                               +    Term      1213 -      1265   10.2 
                               +    Prom      1187 -      1246    6.1 
     3     2 Op  1  55/0.000   +    CDS       1338 -      1766    705  ## PROTEIN SUPPORTED gi|15804573|ref|NP_290614.1| 50S ribosomal protein L11
     4     2 Op  2  43/0.000   +    CDS       1770 -      2474   1148  ## PROTEIN SUPPORTED gi|15804574|ref|NP_290615.1| 50S ribosomal protein L1
     5     2 Op  3  47/0.000   +    CDS       2887 -      3384    798  ## PROTEIN SUPPORTED gi|15804575|ref|NP_290616.1| 50S ribosomal protein L10
     6     2 Op  4  28/0.000   +    CDS       3451 -      3816    562  ## PROTEIN SUPPORTED gi|15804576|ref|NP_290617.1| 50S ribosomal protein L7/L12
                               +    Term      3827 -      3875    8.6 
                               +    Prom      3920 -      3979    2.6 
     7     3 Op  1  58/0.000   +    CDS       4136 -      8164   4095  ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12
                               +    Term      8184 -      8223    8.9 
     8     3 Op  2     .       +    CDS       8241 -     12464   4852  ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit
                               +    Term     12491 -     12516   -0.5 
                               +    Prom     12495 -     12554    4.2 
     9     4 Tu  1     .       +    CDS      12677 -     13216    179  ## B21_03818 hypothetical protein
                               +    Term     13351 -     13391    5.6 
                               -    Term     13469 -     13513    4.3 
    10     5 Op  1   5/0.333   -    CDS      13626 -     14759   1044  ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
    11     5 Op  2  16/0.000   -    CDS      14756 -     15526    726  ## COG2022 Uncharacterized enzyme of thiazole biosynthesis
    12     5 Op  3   5/0.333   -    CDS      15528 -     15728    216  ## COG2104 Sulfur transfer protein involved in thiamine biosynthesis
    13     5 Op  4   3/0.667   -    CDS      15712 -     16467    737  ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
    14     5 Op  5   8/0.000   -    CDS      16460 -     17095    647  ## COG0352 Thiamine monophosphate synthase
    15     5 Op  6   4/0.667   -    CDS      17095 -     18990   1973  ## COG0422 Thiamine biosynthesis protein ThiC
                               -    Prom     19160 -     19219    3.5 
                               -    Term     19160 -     19188   -0.7 
    16     6 Tu  1     .       -    CDS      19223 -     19699    466  ## COG3160 Regulator of sigma D
                               -    Prom     19753 -     19812    3.2 
                               +    Prom     19516 -     19575    2.8 
    17     7 Op  1   5/0.333   +    CDS      19794 -     20567    557  ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding
    18     7 Op  2   4/0.667   +    CDS      20607 -     21671   1234  ## COG0407 Uroporphyrinogen-III decarboxylase
    19     7 Op  3   4/0.667   +    CDS      21681 -     22352    575  ## COG1515 Deoxyinosine 3'endonuclease (endonuclease V)
    20     7 Op  4   6/0.000   +    CDS      22395 -     22985    618  ## COG3068 Uncharacterized protein conserved in bacteria
                               +    Prom     23008 -     23067    1.8 
    21     7 Op  5     .       +    CDS      23172 -     23444    426  ## COG0776 Bacterial nucleoid DNA-binding protein
                               +    Term     23472 -     23505    3.8 
    22     8 Tu  1     .       +    CDS      23517 -     24152    430  ## c4958 hypothetical protein
                               +    Term     24382 -     24416   -0.7 
    23     9 Tu  1     .       -    CDS      24154 -     24579    368  ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
                               -    Prom     24657 -     24716    2.0 
                               +    Prom     24608 -     24667    3.5 
    24    10 Op  1  13/0.000   +    CDS      24826 -     26214   1219  ## COG0642 Signal transduction histidine kinase
    25    10 Op  2     .       +    CDS      26211 -     27536   1323  ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
                               -    Term     27448 -     27487    1.1 
    26    11 Op  1  17/0.000   -    CDS      27533 -     28822   1628  ## COG0151 Phosphoribosylamine-glycine ligase
    27    11 Op  2     .       -    CDS      28834 -     30423   1843  ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
                               -    Prom     30518 -     30577    3.6 
Predicted protein(s)
>gi|223713498|gb|ACDM01000100.1| GENE     1       249  -       632    482    127 aa, chain + ## HITS:1  COG:STM4147 KEGG:ns NR:ns ## COG: STM4147 COG0690 # Protein_GI_number: 16767401 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Salmonella typhimurium LT2 # 1     127       1     127     127     184   96.0  4e-47
MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVAL
LTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVS
FITGLRF
>gi|223713498|gb|ACDM01000100.1| GENE     2       634  -      1179    683    181 aa, chain + ## HITS:1  COG:ECs4905 KEGG:ns NR:ns ## COG: ECs4905 COG0250 # Protein_GI_number: 15834159 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Escherichia coli O157:H7 # 1     181       1     181     181     348  100.0  3e-96
MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS
ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD
KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK
A
>gi|223713498|gb|ACDM01000100.1| GENE     3      1338  -      1766    705    142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804573|ref|NP_290614.1| 50S ribosomal protein L11 [Escherichia coli O157:H7 EDL933] # 1     142       1     142     142 276  100 1e-73
MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVIT
VYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGA
DIEAMTRSIEGTARSMGLVVED
>gi|223713498|gb|ACDM01000100.1| GENE     4      1770  -      2474   1148    234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804574|ref|NP_290615.1| 50S ribosomal protein L1 [Escherichia coli O157:H7 EDL933] # 1     234       1     234     234 446  100 1e-125
MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVR
GATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDA
MRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDF
DADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN
>gi|223713498|gb|ACDM01000100.1| GENE     5      2887  -      3384    798    165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804575|ref|NP_290616.1| 50S ribosomal protein L10 [Escherichia coli O157:H7 EDL933] # 1     165       1     165     165 311  100 2e-84
MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLL
RRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPA
SQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA
>gi|223713498|gb|ACDM01000100.1| GENE     6      3451  -      3816    562    121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804576|ref|NP_290617.1| 50S ribosomal protein L7/L12 [Escherichia coli O157:H7 EDL933] # 1     121       1     121     121 221  100 6e-57
MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTEFDVILK
AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV
K
>gi|223713498|gb|ACDM01000100.1| GENE     7      4136  -      8164   4095   1342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 2    1342       6    1390    1392 1582  58 0.0
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
>gi|223713498|gb|ACDM01000100.1| GENE     8      8241  -     12464   4852   1407 aa, chain + ## HITS:1  COG:ECs4911 KEGG:ns NR:ns ## COG: ECs4911 COG0086 # Protein_GI_number: 15834165 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Escherichia coli O157:H7 # 1    1407       1    1407    1407    2776  100.0  0
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
>gi|223713498|gb|ACDM01000100.1| GENE     9     12677  -     13216    179    179 aa, chain + ## HITS:1  COG:no KEGG:B21_03818 NR:ns ## KEGG: B21_03818 # Name: htrC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1     179       1     179     179     347  100.0  1e-94
MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYRFWVTYSLHCFTKDYEH
QTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPESNVIHAGYGSYAVIEVDLD
GGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVKFFTIAYNLLRNKQLPQPSK
>gi|223713498|gb|ACDM01000100.1| GENE    10     13626  -     14759   1044    377 aa, chain - ## HITS:1  COG:thiH KEGG:ns NR:ns ## COG: thiH COG1060 # Protein_GI_number: 16131820 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Escherichia coli K12 # 1     377       1     377     377     764  100.0  0
MKTFSDRWRQLDWDDIRLRINGKTAADVERALNASQLTRDDMMALLSPAASGYLEQLAQR
AQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEADIARESAAIREM
GFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQPLAETEYAELKQLGLDGVMV
YQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGIDKIGLGALIGLSDNWRVDSYMVA
EHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMDERQLVQTICAFRLLAPEIELSLST
RESPWFRDRVIPLAINNVSAFSKTQPGGYADNHPELEQFSPHDDRRPEAVAAALTAQGLQ
PVWKDWDSYLGRASQRL
>gi|223713498|gb|ACDM01000100.1| GENE    11     14756  -     15526    726    256 aa, chain - ## HITS:1  COG:thiG KEGG:ns NR:ns ## COG: thiG COG2022 # Protein_GI_number: 16131821 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Escherichia coli K12 # 1     256      26     281     281     473  100.0  1e-133
MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIA
AGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLV
QQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVV
DAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAKAFRLAVEAGLLARQSGPGSRSY
FAHATSPLTGFLEASA
>gi|223713498|gb|ACDM01000100.1| GENE    12     15528  -     15728    216     66 aa, chain - ## HITS:1  COG:thiS KEGG:ns NR:ns ## COG: thiS COG2104 # Protein_GI_number: 16132237 # Func_class: H Coenzyme transport and metabolism # Function: Sulfur transfer protein involved in thiamine biosynthesis # Organism: Escherichia coli K12 # 1      66       1      66      66      91  100.0  4e-19
MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLF
QVIAGG
>gi|223713498|gb|ACDM01000100.1| GENE    13     15712  -     16467    737    251 aa, chain - ## HITS:1  COG:thiF KEGG:ns NR:ns ## COG: thiF COG0476 # Protein_GI_number: 16131822 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Escherichia coli K12 # 7     251       1     245     245     444  100.0  1e-125
MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD
DDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARAD
VVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEP
ERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGC
PVCGGSNADPV
>gi|223713498|gb|ACDM01000100.1| GENE    14     16460  -     17095    647    211 aa, chain - ## HITS:1  COG:thiE KEGG:ns NR:ns ## COG: thiE COG0352 # Protein_GI_number: 16131823 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Escherichia coli K12 # 1     211       1     211     211     395  100.0  1e-110
MYQPDFPPVPFRSGLYPVVDSVQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGR
RYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAGLRLGVSTHDDMEIDVALA
ARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYPTVAIGGISLARAPAVIATGV
GSIAVVSAITQAADWRLATAQLLEIAGVGDE
>gi|223713498|gb|ACDM01000100.1| GENE    15     17095  -     18990   1973    631 aa, chain - ## HITS:1  COG:thiC KEGG:ns NR:ns ## COG: thiC COG0422 # Protein_GI_number: 16131824 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Escherichia coli K12 # 1     631       1     631     631    1313  100.0  0
MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYITGTHPGVRVPMREIQLSPTLIGGSK
EQPQYEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWIDARGDTEELTVRSSDYTKA
RLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITPEMEFIAIRENMGRERIRSEV
LRHQHPGMSFGAHLPENITAEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANI
GNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQAL
EKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMA
KWCLSHHQENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGELT
KIAWEYDVQVMIEGPGHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTSGI
GAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDNAM
SKARFEFRWEDQFNLALDPFTARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRDY
AATQTIEMGMADMSENFRARGGEIYLRKEEA
>gi|223713498|gb|ACDM01000100.1| GENE    16     19223  -     19699    466    158 aa, chain - ## HITS:1  COG:ECs4918 KEGG:ns NR:ns ## COG: ECs4918 COG3160 # Protein_GI_number: 15834172 # Func_class: K Transcription # Function: Regulator of sigma D # Organism: Escherichia coli O157:H7 # 1     158       1     158     158     305  100.0  3e-83
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
>gi|223713498|gb|ACDM01000100.1| GENE    17     19794  -     20567    557    257 aa, chain + ## HITS:1  COG:yjaD KEGG:ns NR:ns ## COG: yjaD COG2816 # Protein_GI_number: 16131826 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Escherichia coli K12 # 1     257       1     257     257     531   99.0  1e-151
MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQ
RRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCR
ERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG
IKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTV
ARRLIEDTVAMCRAEYE
>gi|223713498|gb|ACDM01000100.1| GENE    18     20607  -     21671   1234    354 aa, chain + ## HITS:1  COG:hemE KEGG:ns NR:ns ## COG: hemE COG0407 # Protein_GI_number: 16131827 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Escherichia coli K12 # 1     354       1     354     354     736  100.0  0
MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVT
LQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDE
LGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA
LLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG
RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAP
PARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR
>gi|223713498|gb|ACDM01000100.1| GENE    19     21681  -     22352    575    223 aa, chain + ## HITS:1  COG:nfi KEGG:ns NR:ns ## COG: nfi COG1515 # Protein_GI_number: 16131828 # Func_class: L Replication, recombination and repair # Function: Deoxyinosine 3'endonuclease (endonuclease V) # Organism: Escherichia coli K12 # 1     223       3     225     225     442  100.0  1e-124
MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEVTRAAMVLLKYPSLELV
EYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFVDGHGISHPRRLGVASHFG
LLVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLAWVWRSKARCNPLFIATGHRV
SVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRYTANQP
>gi|223713498|gb|ACDM01000100.1| GENE    20     22395  -     22985    618    196 aa, chain + ## HITS:1  COG:yjaG KEGG:ns NR:ns ## COG: yjaG COG3068 # Protein_GI_number: 16131829 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1     196       1     196     196     383   99.0  1e-106
MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGDGQIYRRILDLIWETLT
VKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSELVHSRLSGETLEHAVEVS
KTSITTVAMLEMTQAGREMSDEELKENPAVEQEWDIQWEIFRLLAECEERDIELIKGLRA
DLREAGESNVGIIFQQ
>gi|223713498|gb|ACDM01000100.1| GENE    21     23172  -     23444    426     90 aa, chain + ## HITS:1  COG:STM4170 KEGG:ns NR:ns ## COG: STM4170 COG0776 # Protein_GI_number: 16767424 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Salmonella typhimurium LT2 # 1      90       1      90      90     135   98.0  1e-32
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG
RNPQTGKEIKIAAANVPAFVSGKALKDAVK
>gi|223713498|gb|ACDM01000100.1| GENE    22     23517  -     24152    430    211 aa, chain + ## HITS:1  COG:no KEGG:c4958 NR:ns ## KEGG: c4958 # Name: yjaH # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1     211      23     233     233     416   99.0  1e-115
MLAGALLLTACSHNSSLPPFTASGFAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTR
EYRWQGDNLTLININVYSKPPVNIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRA
DQIRQISDALRQGRVVLRQGRWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDV
SVAWLEAPEGSQLLLVANSDFCRWQPNEKTF
>gi|223713498|gb|ACDM01000100.1| GENE    23     24154  -     24579    368    141 aa, chain - ## HITS:1  COG:ECs4925 KEGG:ns NR:ns ## COG: ECs4925 COG3678 # Protein_GI_number: 15834179 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli O157:H7 # 1     141      48     188     188     219  100.0  1e-57
MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQQTAWQKIHNDFYAQSS
ALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIPRG
AGMGMGYGGCGGGGHMGMGHW
>gi|223713498|gb|ACDM01000100.1| GENE    24     24826  -     26214   1219    462 aa, chain + ## HITS:1  COG:hydH KEGG:ns NR:ns ## COG: hydH COG0642 # Protein_GI_number: 16131833 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1     462       4     465     465     899  100.0  0
MQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRASEADRQALLEKGNVLIRALESG
SRVGMGMRMHHVQQQALLEEMAGQPGVLWFAVTDAQGIIILHSDPDKVGRALYSPDEMQK
LKPEENSRWRLLGKTETTPALEVYRLFQPMSAPWRHGMHNMPRCNGKAVPQVDAQQAIFI
AVDASDLVATQSGEKRNTLIILFALATVLLASVLSFFWYRRYLRSRQLLQDEMKRKEKLV
ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLE
LVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLN
LYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLDAIFTPYFTTKAEGTGLG
LAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVNITRKDPQG
>gi|223713498|gb|ACDM01000100.1| GENE    25     26211  -     27536   1323    441 aa, chain + ## HITS:1  COG:hydG KEGG:ns NR:ns ## COG: hydG COG2204 # Protein_GI_number: 16131834 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1     441       1     441     441     837  100.0  0
MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA
EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA
LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR
AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD
EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY
RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE
LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN
KTEAARQLGITRKTLLAKLSR
>gi|223713498|gb|ACDM01000100.1| GENE    26     27533  -     28822   1628    429 aa, chain - ## HITS:1  COG:purD KEGG:ns NR:ns ## COG: purD COG0151 # Protein_GI_number: 16131835 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Escherichia coli K12 # 1     429       1     429     429     853   99.0  0
MKVLVIGNGGREHALAWKAVQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFA
QNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTA
EYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDA
GHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT
DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDPETQPIM
LRMKSDLVELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVA
GGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIG
WRAIEREQN
>gi|223713498|gb|ACDM01000100.1| GENE    27     28834  -     30423   1843    529 aa, chain - ## HITS:1  COG:purH KEGG:ns NR:ns ## COG: purH COG0138 # Protein_GI_number: 16131836 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Escherichia coli K12 # 1     529       1     529     529    1033  100.0  0
MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLLAEKGLPVTEVSDYTGF
PEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVVVNLYPFAQTVAREGCSLE
DAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEMDDNEGSLTLATRFDLAIKAF
EHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNLNFIKKLDMRYGENSHQQAAFYI
EENVKEASVATATQVQGKALSYNNIADTDAALECVKEFAEPACVIVKHANPCGVAIGNSI
LDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAIISRQFVEVIIAPSASEEALKITAAKQ
NVRVLTCGQWGERVPGLDFKRVNGGLLVQDRDLGMVGAEELRVVTKRQPSEQELRDALFC
WKVAKFVKSNAIVYAKNNMTIGIGAGQMSRVYSAKIAGIKAADEGLEVKGSSMASDAFFP
FRDGIDAAAAAGVTCVIQPGGSIRDDEVIAAADEHGIAMLFTDMRHFRH
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:52 2011
 Seq name: gi|223713497|gb|ACDM01000101.1| Escherichia sp. 4_1_40B cont1.101, whole genome shotgun sequence 
 Length of sequence - 1190 bp
 Number of predicted genes - 0
 Number of transcription units - 0, operones - 0 average op.length -  0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               + LSU_RRNA        1 -      1190   99.0  # CP000800 [D:227600..230523] # 23S ribosomal RNA # Escherichia coli E24377A #  Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:53 2011
 Seq name: gi|223713496|gb|ACDM01000102.1| Escherichia sp. 4_1_40B cont1.102, whole genome shotgun sequence 
 Length of sequence - 1869 bp
 Number of predicted genes - 0
 Number of transcription units - 0, operones - 0 average op.length -  0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               + LSU_RRNA        1 -      1688   99.0  # CP000946 [R:4420328..4423307] # 23S ribosomal RNA # Escherichia coli ATCC 8739 #  Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
                               + 5S_RRNA      1769 -      1869   99.0  # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 #  Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:54 2011
 Seq name: gi|223713495|gb|ACDM01000103.1| Escherichia sp. 4_1_40B cont1.103, whole genome shotgun sequence 
 Length of sequence - 2265 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 2, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          3 -       923    136  ## COG3436 Transposase and inactivated derivatives
                               +    Term      1159 -      1198    1.1 
     2     2 Tu  1     .       -    CDS       1033 -      2166    319  ## COG3547 Transposase and inactivated derivatives
                               -    Prom      2194 -      2253    2.3 
Predicted protein(s)
>gi|223713495|gb|ACDM01000103.1| GENE     1         3  -       923    136    306 aa, chain + ## HITS:1  COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1     259     217     475     537     442   84.0  1e-124
PLYRQSEIFARQGVELSRALLSNWVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLA
PGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAG
YDRLFSAEREGGALTEAGCWAHARRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLP
VSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFCDDGLAE
ADNNTAERALRAVCLGKKNSYDLCQILSPKRPYAAPGASLYRGLKNLKQSDCILDFTNSY
SGILAP
>gi|223713495|gb|ACDM01000103.1| GENE     2      1033  -      2166    319    377 aa, chain - ## HITS:1  COG:mll9195 KEGG:ns NR:ns ## COG: mll9195 COG3547 # Protein_GI_number: 13488118 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 8     364       7     363     369     338   48.0  1e-92
MHSENIAAYVGLDVHKETLAVAIAAPERLGEVRYYGTINNEAQAVRRLFQKLQGLYGNIL
SCYEAGPCGFGLYHQLTAMNIKCQVIAPSRIPKSPTDRIKNDHRDAISLARLLRAGELTP
VWIPDLTHEAMRDLIRARAAAKRDSRVARQRILSMLLRTDKHYAGKHWTGKHRTWLANQS
FSQPSQQIAFQHYCQSLEQIEDRILQLDQEISRLLPEWSLCNLVCQLQALKGVGQLIAIT
LVAELGDFSRFSNPKQLMAFLGLVPGEYSSGNSIRPRGITKVGNSELRRLLYEAAWSYRT
PAKVGAWLIYYRPDSVTQYSKDIAWKAQQRLCSRYRSLTAKGKKSQVAITAVARELTGFM
WDIALAAQSSFSQQKQN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:55 2011
 Seq name: gi|223713494|gb|ACDM01000104.1| Escherichia sp. 4_1_40B cont1.104, whole genome shotgun sequence 
 Length of sequence - 1384 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         83 -      1382    652  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713494|gb|ACDM01000104.1| GENE     1        83  -      1382    652    433 aa, chain + ## HITS:1  COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     433     346     778    1411     840  100.0  0
MVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEA
GLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASA
FYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDAT
GSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVK
DTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIR
LTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRL
THRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEAL
LWQHETRHAYNAQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:56 2011
 Seq name: gi|223713493|gb|ACDM01000105.1| Escherichia sp. 4_1_40B cont1.105, whole genome shotgun sequence 
 Length of sequence - 1343 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         58 -      1170    245  ## COG3385 FOG: Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713493|gb|ACDM01000105.1| GENE     1        58  -      1170    245    370 aa, chain + ## HITS:1  COG:yi81 KEGG:ns NR:ns ## COG: yi81 COG3385 # Protein_GI_number: 16130326 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     370       3     372     372     728  100.0  0
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREV
TAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAIS
APGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECI
RSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGA
PFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQ
VADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFP
PRSAGSEKKN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:57 2011
 Seq name: gi|223713492|gb|ACDM01000106.1| Escherichia sp. 4_1_40B cont1.106, whole genome shotgun sequence 
 Length of sequence - 1230 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1  23/0.000   -    CDS         30 -       896    272  ## COG2801 Transposase and inactivated derivatives
     2     1 Op  2     .       -    CDS        893 -      1192    288  ## COG2963 Transposase and inactivated derivatives
Predicted protein(s)
>gi|223713492|gb|ACDM01000106.1| GENE     1        30  -       896    272    288 aa, chain - ## HITS:1  COG:tra5_g1 KEGG:ns NR:ns ## COG: tra5_g1 COG2801 # Protein_GI_number: 16128357 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1     288       1     288     288     578  100.0  1e-165
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRS
KQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLE
QDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA
LWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVE
CIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA
>gi|223713492|gb|ACDM01000106.1| GENE     2       893  -      1192    288     99 aa, chain - ## HITS:1  COG:b0298 KEGG:ns NR:ns ## COG: b0298 COG2963 # Protein_GI_number: 16128283 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1      99       4     102     102     114  100.0  6e-26
MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSS
ERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:57 2011
 Seq name: gi|223713491|gb|ACDM01000107.1| Escherichia sp. 4_1_40B cont1.107, whole genome shotgun sequence 
 Length of sequence - 1222 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        181 -      1215    267  ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase
Predicted protein(s)
>gi|223713491|gb|ACDM01000107.1| GENE     1       181  -      1215    267    344 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 19     339      11     317     317 107  31 5e-24
MLRDTGGIKPHEHKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNR
GRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQ
KTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIH
ERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKF
LSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPK
KTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:58 2011
 Seq name: gi|223713490|gb|ACDM01000108.1| Escherichia sp. 4_1_40B cont1.108, whole genome shotgun sequence 
 Length of sequence - 1132 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          1 -      1132   1239  ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins
Predicted protein(s)
>gi|223713490|gb|ACDM01000108.1| GENE     1         1  -      1132   1239    377 aa, chain - ## HITS:1  COG:ECs2098 KEGG:ns NR:ns ## COG: ECs2098 COG0076 # Protein_GI_number: 15831352 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1     377      82     458     466     811   99.0  0
ENWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW
RKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN
TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD
FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA
GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK
LKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDY
KASLKYLSDHPKLQGIA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:59 2011
 Seq name: gi|223713489|gb|ACDM01000109.1| Escherichia sp. 4_1_40B cont1.109, whole genome shotgun sequence 
 Length of sequence - 1031 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          1 -      1029   1443  ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19
Predicted protein(s)
>gi|223713489|gb|ACDM01000109.1| GENE     1         1  -      1029   1443    343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1     343      46     401     407 560  77 1e-160
AFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILV
VAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG
DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRG
TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKRE
EIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP
EGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGV
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:40:59 2011
 Seq name: gi|223713488|gb|ACDM01000110.1| Escherichia sp. 4_1_40B cont1.110, whole genome shotgun sequence 
 Length of sequence - 1013 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       120 -       179    5.8 
     1     1 Tu  1     .       +    CDS        429 -       860    117  ## COG0500 SAM-dependent methyltransferases
Predicted protein(s)
>gi|223713488|gb|ACDM01000110.1| GENE     1       429  -       860    117    143 aa, chain + ## HITS:1  COG:Z1925 KEGG:ns NR:ns ## COG: Z1925 COG0500 # Protein_GI_number: 15801385 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 EDL933 # 1     143      80     222     222     288  100.0  3e-78
MDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKS
CVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILS
EHFENVKTKVQGTVVMFSASGKK
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:00 2011
 Seq name: gi|223713487|gb|ACDM01000111.1| Escherichia sp. 4_1_40B cont1.111, whole genome shotgun sequence 
 Length of sequence - 855 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   3/0.000   -    CDS          2 -       344    237  ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
     2     1 Op  2     .       -    CDS        347 -       775    465  ## COG0451 Nucleoside-diphosphate-sugar epimerases
Predicted protein(s)
>gi|223713487|gb|ACDM01000111.1| GENE     1         2  -       344    237    114 aa, chain - ## HITS:1  COG:ECs2856 KEGG:ns NR:ns ## COG: ECs2856 COG0494 # Protein_GI_number: 15832110 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1     114       2     115     160     229  100.0  9e-61
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA
AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVAEE
>gi|223713487|gb|ACDM01000111.1| GENE     2       347  -       775    465    142 aa, chain - ## HITS:1  COG:ECs2857 KEGG:ns NR:ns ## COG: ECs2857 COG0451 # Protein_GI_number: 15832111 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1     142     180     321     321     301   99.0  3e-82
MIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPM
LSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEI
SLEAGLASTYQWFLENQDRFRG
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:01 2011
 Seq name: gi|223713486|gb|ACDM01000112.1| Escherichia sp. 4_1_40B cont1.112, whole genome shotgun sequence 
 Length of sequence - 802 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               +    Prom       203 -       262    3.4 
     1     1 Tu  1     .       +    CDS        375 -       737    322  ## ECO103_0511 hypothetical protein
Predicted protein(s)
>gi|223713486|gb|ACDM01000112.1| GENE     1       375  -       737    322    120 aa, chain + ## HITS:1  COG:no KEGG:ECO103_0511 NR:ns ## KEGG: ECO103_0511 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1     120       1     120     120     230   99.0  1e-59
MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLLRKFDALEAKCAALENKIIPVSAELPPAN
ESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENFNITHWAVMPKAPEAGA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:04 2011
 Seq name: gi|223713485|gb|ACDM01000113.1| Escherichia sp. 4_1_40B cont1.113, whole genome shotgun sequence 
 Length of sequence - 800 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        112 -       799    396  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713485|gb|ACDM01000113.1| GENE     1       112  -       799    396    229 aa, chain + ## HITS:1  COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     229      89     317    1411     470   99.0  1e-132
MGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAK
LDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRV
LTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGT
EPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWT
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:05 2011
 Seq name: gi|223713484|gb|ACDM01000114.1| Escherichia sp. 4_1_40B cont1.114, whole genome shotgun sequence 
 Length of sequence - 789 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          2 -       788    273  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713484|gb|ACDM01000114.1| GENE     1         2  -       788    273    262 aa, chain + ## HITS:1  COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     262     147     408     682     520  100.0  1e-147
DNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDST
LTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTR
IQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTD
TTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLD
RLEEEIRADRVSSESRAWLAQC
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:05 2011
 Seq name: gi|223713483|gb|ACDM01000115.1| Escherichia sp. 4_1_40B cont1.115, whole genome shotgun sequence 
 Length of sequence - 777 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   6/0.000   +    CDS          1 -       480    579  ## COG2301 Citrate lyase beta subunit
     2     1 Op  2     .       +    CDS        491 -       776    264  ## COG3051 Citrate lyase, alpha subunit
Predicted protein(s)
>gi|223713483|gb|ACDM01000115.1| GENE     1         1  -       480    579    159 aa, chain + ## HITS:1  COG:citE KEGG:ns NR:ns ## COG: citE COG2301 # Protein_GI_number: 16128599 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Escherichia coli K12 # 1     159     149     307     307     270  100.0  8e-73
ITRAVEIAHASERLIGIALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDT
VYSDANNEAGFLQEAAHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEA
AAREGLGVVSLNGKMVDGPVIDRARLVLSRAELSGIREE
>gi|223713483|gb|ACDM01000115.1| GENE     2       491  -       776    264     95 aa, chain + ## HITS:1  COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1      95       1      95     510     198  100.0  2e-51
MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQ
DGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:06 2011
 Seq name: gi|223713482|gb|ACDM01000116.1| Escherichia sp. 4_1_40B cont1.116, whole genome shotgun sequence 
 Length of sequence - 762 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS         62 -       469    205  ## APECO1_1082 hypothetical protein
                               +    Term       647 -       691    1.5 
Predicted protein(s)
>gi|223713482|gb|ACDM01000116.1| GENE     1        62  -       469    205    135 aa, chain + ## HITS:1  COG:no KEGG:APECO1_1082 NR:ns ## KEGG: APECO1_1082 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1     135      30     164     164     279   99.0  3e-74
MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQRGNDGQPPWFEHDQMTV
AEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVMCDEDYEGEKCCPSCGTGV
YSREGGQEGNWKDRN
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:11 2011
 Seq name: gi|223713481|gb|ACDM01000117.1| Escherichia sp. 4_1_40B cont1.117, whole genome shotgun sequence 
 Length of sequence - 727 bp
 Number of predicted genes - 0
 Number of transcription units - 0, operones - 0 average op.length -  0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               - SSU_RRNA        1 -       727  100.0  # GQ047703 [D:1..1363] # 16S ribosomal RNA # uncultured bacterium #  Bacteria; environmental samples.
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:12 2011
 Seq name: gi|223713480|gb|ACDM01000118.1| Escherichia sp. 4_1_40B cont1.118, whole genome shotgun sequence 
 Length of sequence - 727 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS          1 -       727    344  ## COG3209 Rhs family protein
Predicted protein(s)
>gi|223713480|gb|ACDM01000118.1| GENE     1         1  -       727    344    242 aa, chain + ## HITS:1  COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1     242     902    1143    1397     479   99.0  1e-135
TTDPAGNRLPDPELHPDSALSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDD
ERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRK
PQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQS
GGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPAR
KI
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:13 2011
 Seq name: gi|223713479|gb|ACDM01000119.1| Escherichia sp. 4_1_40B cont1.119, whole genome shotgun sequence 
 Length of sequence - 711 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   5/0.000   +    CDS          3 -       353    340  ## COG3053 Citrate lyase synthetase
     2     1 Op  2     .       +    CDS        368 -       664    308  ## COG3052 Citrate lyase, gamma subunit
Predicted protein(s)
>gi|223713479|gb|ACDM01000119.1| GENE     1         3  -       353    340    116 aa, chain + ## HITS:1  COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1     116     266     381     381     237  100.0  4e-63
TEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMRYWLETPTISAPPIELVEIER
LRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQNLLEHSRQDAAARQKTPA
>gi|223713479|gb|ACDM01000119.1| GENE     2       368  -       664    308     98 aa, chain + ## HITS:1  COG:ECs0656 KEGG:ns NR:ns ## COG: ECs0656 COG3052 # Protein_GI_number: 15829910 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Escherichia coli O157:H7 # 1      98       1      98      98     182  100.0  1e-46
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILDVLARYNVRG
VQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:13 2011
 Seq name: gi|223713478|gb|ACDM01000120.1| Escherichia sp. 4_1_40B cont1.120, whole genome shotgun sequence 
 Length of sequence - 682 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          2 -       593    468  ## COG1349 Transcriptional regulators of sugar metabolism
Predicted protein(s)
>gi|223713478|gb|ACDM01000120.1| GENE     1         2  -       593    468    197 aa, chain - ## HITS:1  COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1     197       1     197     269     359   98.0  2e-99
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQRI
AVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVLLDSGTTTFE
IARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHF
DMLFLGVDAIDLERGVS
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:14 2011
 Seq name: gi|223713477|gb|ACDM01000121.1| Escherichia sp. 4_1_40B cont1.121, whole genome shotgun sequence 
 Length of sequence - 565 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          1 -       328    162  ## ECB_01907 hypothetical protein
Predicted protein(s)
>gi|223713477|gb|ACDM01000121.1| GENE     1         1  -       328    162    109 aa, chain - ## HITS:1  COG:no KEGG:ECB_01907 NR:ns ## KEGG: ECB_01907 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1     109      12     120     144     218   99.0  7e-56
MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQYETELPWFEHTDDRLTE
HGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQCHHDYYGE
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:16 2011
 Seq name: gi|223713476|gb|ACDM01000122.1| Escherichia sp. 4_1_40B cont1.122, whole genome shotgun sequence 
 Length of sequence - 565 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS          1 -       463    194  ## COG5525 Bacteriophage tail assembly protein
                               -    Prom       487 -       546    2.0 
Predicted protein(s)
>gi|223713476|gb|ACDM01000122.1| GENE     1         1  -       463    194    154 aa, chain - ## HITS:1  COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 58     151     106     201     247      60   35.0  1e-09
MKPVFDENGLATVPGNMRCFYYEAVTYEYTGWSDEYINTGVSMPACSTGIDPGEYIPGRV
AVFTGKGWSHEEDHRNETVYSTENGAAVTVDYIGAIKDGYVTLSPLTPYDKWDGEKWVTD
TEAQHSAALDAAEVKRQSLIDAAMASISLIQLKL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:18 2011
 Seq name: gi|223713475|gb|ACDM01000123.1| Escherichia sp. 4_1_40B cont1.123, whole genome shotgun sequence 
 Length of sequence - 547 bp
 Number of predicted genes - 0
 Number of transcription units - 0, operones - 0 average op.length -  0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
                               - SSU_RRNA       39 -       547  100.0  # CP000026 [D:293322..294867] # 16S ribosomal RNA # Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC #  9150 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:19 2011
 Seq name: gi|223713474|gb|ACDM01000124.1| Escherichia sp. 4_1_40B cont1.124, whole genome shotgun sequence 
 Length of sequence - 529 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       +    CDS        167 -       527    223  ## ECO111_3781 hypothetical protein
Predicted protein(s)
>gi|223713474|gb|ACDM01000124.1| GENE     1       167  -       527    223    120 aa, chain + ## HITS:1  COG:no KEGG:ECO111_3781 NR:ns ## KEGG: ECO111_3781 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1     120       1     120     280     243   99.0  2e-63
MSDITISRPEVVTGHTDVICSTNIRHILAVRKSTLLQIDTLIRQLAEISAMTESIGGKAA
PDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDAQARDTWYRSL
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:21 2011
 Seq name: gi|223713473|gb|ACDM01000125.1| Escherichia sp. 4_1_40B cont1.125, whole genome shotgun sequence 
 Length of sequence - 513 bp
 Number of predicted genes - 1, with homology - 1
 Number of transcription units - 1, operones - 0 average op.length -  0.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Tu  1     .       -    CDS         76 -       306    104  ## ECO103_3595 hypothetical protein
                               -    Prom       387 -       446    3.0 
Predicted protein(s)
>gi|223713473|gb|ACDM01000125.1| GENE     1        76  -       306    104     76 aa, chain - ## HITS:1  COG:no KEGG:ECO103_3595 NR:ns ## KEGG: ECO103_3595 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1      76     205     280     280     160  100.0  1e-38
MLHLFSGKPIPDNRENITIRLDGHIQSVQGKERYEDEMFIIKYFKKGSAHITFKRLELID
RINDIIARYFPSVLSA
 Prediction of potential genes in microbial  genomes
 Time:   Mon May 16 19:41:24 2011
 Seq name: gi|223713472|gb|ACDM01000126.1| Escherichia sp. 4_1_40B cont1.126, whole genome shotgun sequence 
 Length of sequence - 500 bp
 Number of predicted genes - 2, with homology - 2
 Number of transcription units - 1, operones - 1 average op.length -  2.0
     N      Tu/Op   Conserved  S             Start         End    Score
                   pairs(N/Pv)
     1     1 Op  1   1/0.000   -    CDS          1 -       181    107  ## COG3596 Predicted GTPase
     2     1 Op  2     .       -    CDS        199 -       435    112  ## COG3596 Predicted GTPase
Predicted protein(s)
>gi|223713472|gb|ACDM01000126.1| GENE     1         1  -       181    107     60 aa, chain - ## HITS:1  COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1      60      86     145     290     126  100.0  9e-30
MVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQ
>gi|223713472|gb|ACDM01000126.1| GENE     2       199  -       435    112     78 aa, chain - ## HITS:1  COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1      46       1      46     290      95   97.0  3e-20
MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKAGPVNPHSVMHCFRGR
SPRSVMFTPAPGKCSASV