Prediction of potential genes in microbial genomes Time: Mon May 16 18:27:44 2011 Seq name: gi|223713597|gb|ACDM01000001.1| Escherichia sp. 4_1_40B cont1.1, whole genome shotgun sequence Length of sequence - 25466 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 16, operones - 5 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 3.9 1 1 Tu 1 . + CDS 223 - 1611 1051 ## COG0477 Permeases of the major facilitator superfamily 2 2 Op 1 3/0.889 - CDS 1608 - 1931 275 ## COG5544 Predicted periplasmic lipoprotein - Term 1938 - 1975 3.7 3 2 Op 2 3/0.889 - CDS 1977 - 3332 1368 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 4 3 Op 1 3/0.889 - CDS 3446 - 6106 2370 ## COG1042 Acyl-CoA synthetase (NDP forming) 5 3 Op 2 3/0.889 - CDS 6138 - 6662 458 ## COG3148 Uncharacterized conserved protein - Term 6866 - 6898 5.4 6 4 Tu 1 . - CDS 6905 - 7324 178 ## PROTEIN SUPPORTED gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein - Prom 7383 - 7442 6.1 + Prom 7332 - 7391 3.2 7 5 Tu 1 . + CDS 7531 - 8568 956 ## COG0566 rRNA methylases + Term 8747 - 8787 0.1 - Term 8562 - 8601 5.1 8 6 Tu 1 . - CDS 8616 - 9305 724 ## COG0692 Uracil DNA glycosylase - Prom 9476 - 9535 5.9 + Prom 9367 - 9426 7.3 9 7 Tu 1 . + CDS 9610 - 9993 527 ## COG3445 Acid-induced glycyl radical enzyme + Term 10016 - 10051 7.4 - Term 10004 - 10039 7.4 10 8 Tu 1 . - CDS 10049 - 10636 489 ## COG1280 Putative threonine efflux protein - Prom 10673 - 10732 4.3 + Prom 10654 - 10713 3.8 11 9 Tu 1 . + CDS 10739 - 11620 525 ## COG0583 Transcriptional regulator + Term 11628 - 11657 -0.5 12 10 Tu 1 . - CDS 11829 - 13163 1545 ## COG0513 Superfamily II DNA and RNA helicases - Prom 13295 - 13354 4.2 + Prom 13197 - 13256 2.4 13 11 Tu 1 . + CDS 13295 - 14032 719 ## COG4123 Predicted O-methyltransferase + Term 14197 - 14234 -0.9 14 12 Tu 1 . - CDS 14017 - 15639 1289 ## COG0029 Aspartate oxidase - Prom 15878 - 15937 5.1 + Prom 15770 - 15829 5.0 15 13 Op 1 . + CDS 15895 - 16050 80 ## ECBD_1107 hypothetical protein 16 13 Op 2 11/0.000 + CDS 16047 - 16622 356 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 17 13 Op 3 10/0.000 + CDS 16655 - 17305 516 ## COG3073 Negative regulator of sigma E activity 18 13 Op 4 8/0.000 + CDS 17305 - 18261 707 ## COG3026 Negative regulator of sigma E activity 19 13 Op 5 4/0.778 + CDS 18258 - 18737 376 ## COG3086 Positive regulator of sigma E activity + Term 18748 - 18792 -0.9 + Prom 18791 - 18850 5.6 20 14 Op 1 14/0.000 + CDS 18935 - 20734 2154 ## COG0481 Membrane GTPase LepA 21 14 Op 2 . + CDS 20750 - 21724 1063 ## COG0681 Signal peptidase I + Term 21737 - 21782 14.1 22 15 Tu 1 . - CDS 21774 - 21938 65 ## ECSP_3513 hypothetical protein - Prom 22092 - 22151 3.2 + Prom 21775 - 21834 1.8 23 16 Op 1 18/0.000 + CDS 21996 - 22676 630 ## COG0571 dsRNA-specific ribonuclease 24 16 Op 2 16/0.000 + CDS 22673 - 23578 1022 ## COG1159 GTPase 25 16 Op 3 9/0.000 + CDS 23590 - 24318 638 ## COG1381 Recombinational DNA repair protein (RecF pathway) 26 16 Op 4 8/0.000 + CDS 24330 - 25061 973 ## COG0854 Pyridoxal phosphate biosynthesis protein 27 16 Op 5 . + CDS 25061 - 25441 299 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) Predicted protein(s) >gi|223713597|gb|ACDM01000001.1| GENE 1 223 - 1611 1051 462 aa, chain + ## HITS:1 COG:kgtP KEGG:ns NR:ns ## COG: kgtP COG0477 # Protein_GI_number: 16130512 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 31 462 1 432 432 763 100.0 0 MQQMYNISFTKKNKQKRPTKASDYGRRHNGMAESTVTADSKLTSSDTRRRIWAIVGASSG NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH GRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVV ALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYL VNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSAL QNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAE YVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL >gi|223713597|gb|ACDM01000001.1| GENE 2 1608 - 1931 275 107 aa, chain - ## HITS:1 COG:STM2653 KEGG:ns NR:ns ## COG: STM2653 COG5544 # Protein_GI_number: 16765973 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Salmonella typhimurium LT2 # 1 107 1 107 107 155 76.0 2e-38 MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFG LMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVWQLTRH >gi|223713597|gb|ACDM01000001.1| GENE 3 1977 - 3332 1368 451 aa, chain - ## HITS:1 COG:ECs3452 KEGG:ns NR:ns ## COG: ECs3452 COG1502 # Protein_GI_number: 15832706 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli O157:H7 # 1 431 2 432 452 877 100.0 0 MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQ DDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVD VPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMS DIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSV TPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGD KTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKG MWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRD LQSIADYPVKVRKLIRRLRRIRIDRLISRIL >gi|223713597|gb|ACDM01000001.1| GENE 4 3446 - 6106 2370 886 aa, chain - ## HITS:1 COG:yfiQ_1 KEGG:ns NR:ns ## COG: yfiQ_1 COG1042 # Protein_GI_number: 16130509 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Escherichia coli K12 # 1 709 1 709 709 1366 100.0 0 MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAW PDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQHEDLRACALRHNMR LLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIAL GDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRSPA AQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAAP AALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILLH SQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFSE AGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPSNLTSNTAEAHLLLQQAIAEGATS LDTHEVQPILQAYGMNTLPTWIASDSTEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVML YLRTANEVQQAANAIFDRVKMAWPQARVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIM LGEGGVEWRPEDQAVVALPPLNMNLARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQV SNLIVDCPEIQRLDIHPLLASGSEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVEL KNGERCLFRPILPEDEPQLQQFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMA FVAVRRIDQTEEILGVTRAISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGL QRLNGITMPNNRGMVALARKLGFNVDIQLEEGIVGLTLNLAQREES >gi|223713597|gb|ACDM01000001.1| GENE 5 6138 - 6662 458 174 aa, chain - ## HITS:1 COG:yfiP KEGG:ns NR:ns ## COG: yfiP COG3148 # Protein_GI_number: 16130508 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 174 67 240 240 347 100.0 8e-96 MFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLELVQNPDYQPMVVFPASYADEQ REVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEG QYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV >gi|223713597|gb|ACDM01000001.1| GENE 6 6905 - 7324 178 139 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein [Methanocorpusculum labreanum Z] # 55 136 35 115 120 73 46 2e-12 MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVIDFW APWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVD MLNGAVPKAPFDSWLNESL >gi|223713597|gb|ACDM01000001.1| GENE 7 7531 - 8568 956 345 aa, chain + ## HITS:1 COG:ECs3447 KEGG:ns NR:ns ## COG: ECs3447 COG0566 # Protein_GI_number: 15832701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Escherichia coli O157:H7 # 1 345 1 345 345 672 100.0 0 MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA >gi|223713597|gb|ACDM01000001.1| GENE 8 8616 - 9305 724 229 aa, chain - ## HITS:1 COG:ung KEGG:ns NR:ns ## COG: ung COG0692 # Protein_GI_number: 16130505 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Escherichia coli K12 # 1 229 1 229 229 466 100.0 1e-131 MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVI LGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVL LLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRH HVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMPVLPAESE >gi|223713597|gb|ACDM01000001.1| GENE 9 9610 - 9993 527 127 aa, chain + ## HITS:1 COG:ECs3445 KEGG:ns NR:ns ## COG: ECs3445 COG3445 # Protein_GI_number: 15832699 # Func_class: R General function prediction only # Function: Acid-induced glycyl radical enzyme # Organism: Escherichia coli O157:H7 # 1 127 1 127 127 243 100.0 9e-65 MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVVAVSKLGDIEYREVPVE VKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIA RTFTESL >gi|223713597|gb|ACDM01000001.1| GENE 10 10049 - 10636 489 195 aa, chain - ## HITS:1 COG:yfiK KEGG:ns NR:ns ## COG: yfiK COG1280 # Protein_GI_number: 16130503 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1 195 1 195 195 329 100.0 2e-90 MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGI SFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQAKPISFWASFALQFVNVKI ILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRLFRQYGRQLNI VLALLLVYCAVRIFY >gi|223713597|gb|ACDM01000001.1| GENE 11 10739 - 11620 525 293 aa, chain + ## HITS:1 COG:yfiE KEGG:ns NR:ns ## COG: yfiE COG0583 # Protein_GI_number: 16130502 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 293 16 308 308 571 100.0 1e-163 MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFSVQLFEKIGRRMCLTRE GKKLLPHIYELTRVMDTLREAAKKESDPDGELRVVSGETLLSYRMPQVLQRFRQRAPKVR LSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEP GRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIELISIESIKRCVAANIGVSYLPRF AVAKELECGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCVEESFVAG >gi|223713597|gb|ACDM01000001.1| GENE 12 11829 - 13163 1545 444 aa, chain - ## HITS:1 COG:ECs3442 KEGG:ns NR:ns ## COG: ECs3442 COG0513 # Protein_GI_number: 15832696 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1 444 1 444 444 778 100.0 0 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH RDTKNIGKRRKPSGTGVPPQTTEE >gi|223713597|gb|ACDM01000001.1| GENE 13 13295 - 14032 719 245 aa, chain + ## HITS:1 COG:yfiC KEGG:ns NR:ns ## COG: yfiC COG4123 # Protein_GI_number: 16130500 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Escherichia coli K12 # 1 245 41 285 285 509 100.0 1e-144 MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLAL MLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLII SNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTEL ALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQA FYLFM >gi|223713597|gb|ACDM01000001.1| GENE 14 14017 - 15639 1289 540 aa, chain - ## HITS:1 COG:nadB KEGG:ns NR:ns ## COG: nadB COG0029 # Protein_GI_number: 16130499 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Escherichia coli K12 # 1 540 1 540 540 1130 100.0 0 MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDET DSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTR EGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVV GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEF NQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHE MKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVD DHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLP PWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH FRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSPGNHYINR >gi|223713597|gb|ACDM01000001.1| GENE 15 15895 - 16050 80 51 aa, chain + ## HITS:1 COG:no KEGG:ECBD_1107 NR:ns ## KEGG: ECBD_1107 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 51 1 51 51 66 100.0 3e-10 MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFGLGRLYLG >gi|223713597|gb|ACDM01000001.1| GENE 16 16047 - 16622 356 191 aa, chain + ## HITS:1 COG:ECs3439 KEGG:ns NR:ns ## COG: ECs3439 COG1595 # Protein_GI_number: 15832693 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 360 100.0 1e-100 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPEN LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA IDNKVQPLIRR >gi|223713597|gb|ACDM01000001.1| GENE 17 16655 - 17305 516 216 aa, chain + ## HITS:1 COG:rseA KEGG:ns NR:ns ## COG: rseA COG3073 # Protein_GI_number: 16130497 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Escherichia coli K12 # 1 216 1 216 216 329 100.0 2e-90 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ >gi|223713597|gb|ACDM01000001.1| GENE 18 17305 - 18261 707 318 aa, chain + ## HITS:1 COG:ECs3437 KEGG:ns NR:ns ## COG: ECs3437 COG3026 # Protein_GI_number: 15832691 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Escherichia coli O157:H7 # 1 318 1 318 318 614 100.0 1e-176 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL PPQTAKRIAENIKFGAAQ >gi|223713597|gb|ACDM01000001.1| GENE 19 18258 - 18737 376 159 aa, chain + ## HITS:1 COG:rseC KEGG:ns NR:ns ## COG: rseC COG3086 # Protein_GI_number: 16130495 # Func_class: T Signal transduction mechanisms # Function: Positive regulator of sigma E activity # Organism: Escherichia coli K12 # 1 159 1 159 159 294 100.0 5e-80 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ >gi|223713597|gb|ACDM01000001.1| GENE 20 18935 - 20734 2154 599 aa, chain + ## HITS:1 COG:ECs3435 KEGG:ns NR:ns ## COG: ECs3435 COG0481 # Protein_GI_number: 15832689 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Escherichia coli O157:H7 # 1 599 1 599 599 1167 100.0 0 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVT LDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIF TPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLF PVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVIT LCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARS TVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK >gi|223713597|gb|ACDM01000001.1| GENE 21 20750 - 21724 1063 324 aa, chain + ## HITS:1 COG:lepB KEGG:ns NR:ns ## COG: lepB COG0681 # Protein_GI_number: 16130493 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Escherichia coli K12 # 1 324 1 324 324 652 100.0 0 MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGDSLDKATLKKVAPKPGW LETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTL IETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENA LPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILT VPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAI WMSFDKQEGEWPTGLRLSRIGGIH >gi|223713597|gb|ACDM01000001.1| GENE 22 21774 - 21938 65 54 aa, chain - ## HITS:1 COG:no KEGG:ECSP_3513 NR:ns ## KEGG: ECSP_3513 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 54 1 54 54 99 96.0 3e-20 MVLLTASLQFQFTGIWGPTLFRVPWQPGGANLKLRGNILYTTTGDVVSHGRFIS >gi|223713597|gb|ACDM01000001.1| GENE 23 21996 - 22676 630 226 aa, chain + ## HITS:1 COG:ECs3433 KEGG:ns NR:ns ## COG: ECs3433 COG0571 # Protein_GI_number: 15832687 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Escherichia coli O157:H7 # 1 226 1 226 226 422 100.0 1e-118 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRF PRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALI GGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVR GEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLELE >gi|223713597|gb|ACDM01000001.1| GENE 24 22673 - 23578 1022 301 aa, chain + ## HITS:1 COG:era KEGG:ns NR:ns ## COG: era COG1159 # Protein_GI_number: 16130491 # Func_class: R General function prediction only # Function: GTPase # Organism: Escherichia coli K12 # 1 301 1 301 301 600 100.0 1e-172 MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVI LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD L >gi|223713597|gb|ACDM01000001.1| GENE 25 23590 - 24318 638 242 aa, chain + ## HITS:1 COG:ECs3431 KEGG:ns NR:ns ## COG: ECs3431 COG1381 # Protein_GI_number: 15832685 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Escherichia coli O157:H7 # 1 242 1 242 242 470 100.0 1e-132 MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLRF GGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHCIQSL AGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDN KTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTH YE >gi|223713597|gb|ACDM01000001.1| GENE 26 24330 - 25061 973 243 aa, chain + ## HITS:1 COG:ECs3430 KEGG:ns NR:ns ## COG: ECs3430 COG0854 # Protein_GI_number: 15832684 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Escherichia coli O157:H7 # 1 243 1 243 243 438 100.0 1e-123 MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRI LRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDAC KRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAAT FAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE ARG >gi|223713597|gb|ACDM01000001.1| GENE 27 25061 - 25441 299 126 aa, chain + ## HITS:1 COG:acpS KEGG:ns NR:ns ## COG: acpS COG0736 # Protein_GI_number: 16130488 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Escherichia coli K12 # 1 126 1 126 126 240 100.0 5e-64 MAILGLGTDIVEIARIEAVIARSGDRLARRVLSDNEWAIWKTHHQPVRFLAKRFAVKEAA AKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKLGVANMHVTLADERHYACA TVIIES Prediction of potential genes in microbial genomes Time: Mon May 16 18:28:43 2011 Seq name: gi|223713596|gb|ACDM01000002.1| Escherichia sp. 4_1_40B cont1.2, whole genome shotgun sequence Length of sequence - 172265 bp Number of predicted genes - 156, with homology - 156 Number of transcription units - 75, operones - 38 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 621 - 655 1.1 1 1 Op 1 1/0.897 - CDS 656 - 916 287 ## COG1145 Ferredoxin 2 1 Op 2 . - CDS 972 - 1820 882 ## COG1737 Transcriptional regulators + Prom 1836 - 1895 3.7 3 2 Op 1 2/0.759 + CDS 2029 - 2664 500 ## COG0560 Phosphoserine phosphatase 4 2 Op 2 . + CDS 2722 - 3225 458 ## COG0590 Cytosine/adenosine deaminases 5 3 Tu 1 . - CDS 3222 - 4778 1748 ## COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein - Prom 4926 - 4985 4.0 6 4 Tu 1 . + CDS 5039 - 8923 4409 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain + Term 8984 - 9013 0.4 7 5 Tu 1 . + CDS 9526 - 10908 995 ## COG0642 Signal transduction histidine kinase + Prom 10942 - 11001 1.7 8 6 Op 1 . + CDS 11073 - 11786 504 ## EcHS_A2708 hypothetical protein 9 6 Op 2 4/0.517 + CDS 11776 - 13110 1283 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 10 6 Op 3 . + CDS 13171 - 13509 503 ## COG0347 Nitrogen regulatory protein PII 11 7 Tu 1 . - CDS 13554 - 14744 1303 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Prom 14782 - 14841 7.3 + Prom 14948 - 15007 5.6 12 8 Tu 1 . + CDS 15072 - 16325 1576 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 16438 - 16474 2.4 - Term 16474 - 16503 2.1 13 9 Tu 1 . - CDS 16523 - 17716 1116 ## COG1940 Transcriptional regulator/sugar kinase - Prom 17741 - 17800 3.6 + Prom 17630 - 17689 2.9 14 10 Tu 1 . + CDS 17834 - 21115 3042 ## JW5405 conserved hypothetical protein + Prom 21124 - 21183 9.9 15 11 Op 1 16/0.000 + CDS 21212 - 22195 1095 ## COG1879 ABC-type sugar transport system, periplasmic component 16 11 Op 2 21/0.000 + CDS 22218 - 23729 176 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 17 11 Op 3 3/0.621 + CDS 23754 - 24752 1171 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 18 11 Op 4 2/0.759 + CDS 24827 - 25879 1062 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 19 11 Op 5 . + CDS 25891 - 26763 760 ## COG2017 Galactose mutarotase and related enzymes + Term 26773 - 26816 4.6 - Term 26761 - 26804 8.4 20 12 Op 1 1/0.897 - CDS 26811 - 27233 460 ## COG2259 Predicted membrane protein 21 12 Op 2 6/0.172 - CDS 27330 - 28532 1059 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 22 12 Op 3 3/0.621 - CDS 28542 - 29354 808 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 23 12 Op 4 4/0.517 - CDS 29351 - 29671 148 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 24 12 Op 5 6/0.172 - CDS 29671 - 30189 351 ## COG5517 Small subunit of phenylpropionate dioxygenase 25 12 Op 6 . - CDS 30186 - 31547 1289 ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - Prom 31596 - 31655 2.2 + Prom 31505 - 31564 5.4 26 13 Tu 1 . + CDS 31683 - 32573 759 ## COG0583 Transcriptional regulator + Prom 32616 - 32675 2.1 27 14 Tu 1 . + CDS 32733 - 33872 951 ## COG0477 Permeases of the major facilitator superfamily + Term 34036 - 34100 -0.8 28 15 Tu 1 . - CDS 33864 - 35048 824 ## COG3711 Transcriptional antiterminator - Prom 35250 - 35309 5.2 29 16 Tu 1 . - CDS 35335 - 36189 772 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 36227 - 36286 2.0 30 17 Tu 1 . - CDS 36334 - 37137 1033 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 37173 - 37232 3.9 31 18 Tu 1 . + CDS 37256 - 37996 1028 ## COG0565 rRNA methylase + Prom 38354 - 38413 4.7 32 19 Op 1 13/0.000 + CDS 38448 - 38936 524 ## COG1959 Predicted transcriptional regulator 33 19 Op 2 20/0.000 + CDS 39048 - 40262 1706 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 34 19 Op 3 14/0.000 + CDS 40290 - 40676 588 ## COG0822 NifU homolog involved in Fe-S cluster formation 35 19 Op 4 10/0.034 + CDS 40693 - 41016 461 ## COG0316 Uncharacterized conserved protein + Term 41032 - 41071 5.0 36 20 Op 1 11/0.034 + CDS 41112 - 41627 605 ## COG1076 DnaJ-domain-containing proteins 1 37 20 Op 2 13/0.000 + CDS 41644 - 43494 2376 ## COG0443 Molecular chaperone 38 20 Op 3 9/0.034 + CDS 43496 - 43831 385 ## COG0633 Ferredoxin 39 20 Op 4 2/0.759 + CDS 43843 - 44043 376 ## COG2975 Uncharacterized protein conserved in bacteria + Term 44178 - 44209 3.9 + Prom 44064 - 44123 1.8 40 21 Tu 1 . + CDS 44221 - 45504 1499 ## COG0260 Leucyl aminopeptidase + Prom 45535 - 45594 7.1 41 22 Tu 1 . + CDS 45646 - 46422 701 ## SFV_2570 enhanced serine sensitivity protein SseB + Term 46496 - 46522 1.0 - Term 47182 - 47223 9.0 42 23 Tu 1 . - CDS 47239 - 48084 841 ## COG2897 Rhodanese-related sulfurtransferase - Prom 48241 - 48300 2.7 + Prom 48194 - 48253 4.2 43 24 Op 1 1/0.897 + CDS 48291 - 49388 870 ## COG2373 Large extracellular alpha-helical protein 44 24 Op 2 7/0.069 + CDS 49349 - 53251 3589 ## COG2373 Large extracellular alpha-helical protein 45 24 Op 3 1/0.897 + CDS 53252 - 55564 1150 ## COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC + Prom 55604 - 55663 3.7 46 25 Op 1 . + CDS 55713 - 56144 510 ## COG0105 Nucleoside diphosphate kinase + Prom 56148 - 56207 2.5 47 25 Op 2 . + CDS 56294 - 57448 1374 ## COG0820 Predicted Fe-S-cluster redox enzyme + Term 57453 - 57502 13.6 + Prom 57585 - 57644 6.0 48 26 Op 1 10/0.034 + CDS 57733 - 58746 596 ## COG1426 Uncharacterized protein conserved in bacteria 49 26 Op 2 11/0.034 + CDS 58773 - 59891 1209 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis + Term 59901 - 59932 4.5 50 27 Op 1 12/0.000 + CDS 60002 - 61276 1488 ## COG0124 Histidyl-tRNA synthetase 51 27 Op 2 9/0.034 + CDS 61294 - 61914 672 ## COG2976 Uncharacterized protein conserved in bacteria 52 27 Op 3 7/0.069 + CDS 61925 - 63103 1179 ## COG1520 FOG: WD40-like repeat + Term 63124 - 63165 10.4 + Prom 63126 - 63185 1.8 53 28 Op 1 . + CDS 63221 - 64693 2033 ## COG1160 Predicted GTPases 54 28 Op 2 . + CDS 64763 - 64978 143 ## S2728 hypothetical protein 55 29 Tu 1 . - CDS 64975 - 66345 1109 ## COG1570 Exonuclease VII, large subunit - Prom 66380 - 66439 5.0 + Prom 66411 - 66470 6.7 56 30 Op 1 13/0.000 + CDS 66507 - 67973 1814 ## COG0516 IMP dehydrogenase/GMP reductase + Term 67980 - 68015 6.1 57 30 Op 2 . + CDS 68042 - 69619 1954 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 69648 - 69679 3.4 - Term 69627 - 69674 6.9 58 31 Op 1 . - CDS 69712 - 70251 637 ## ECP_2508 hypothetical protein 59 31 Op 2 . - CDS 70267 - 70782 381 ## SSON_2587 putative outer membrane lipoprotein - Prom 70904 - 70963 9.1 - Term 71001 - 71042 1.3 60 32 Tu 1 . - CDS 71096 - 71287 131 ## EcSMS35_2653 hypothetical protein - Prom 71389 - 71448 7.7 + Prom 70894 - 70953 8.3 61 33 Op 1 . + CDS 71132 - 71422 109 ## EC55989_2789 hypothetical protein + Prom 71443 - 71502 6.5 62 33 Op 2 . + CDS 71639 - 73882 1542 ## COG2200 FOG: EAL domain + Term 74088 - 74134 1.9 - Term 73875 - 73915 10.3 63 34 Op 1 11/0.034 - CDS 73921 - 75462 1463 ## COG0248 Exopolyphosphatase 64 34 Op 2 4/0.517 - CDS 75467 - 77533 2012 ## COG0855 Polyphosphate kinase - Prom 77569 - 77628 2.8 - Term 77656 - 77687 2.4 65 35 Op 1 21/0.000 - CDS 77705 - 78343 692 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 66 35 Op 2 . - CDS 78343 - 79380 1238 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase - Prom 79424 - 79483 7.0 + Prom 79610 - 79669 7.5 67 36 Tu 1 5/0.310 + CDS 79705 - 80331 855 ## COG0035 Uracil phosphoribosyltransferase + Term 80350 - 80382 3.1 + Prom 80333 - 80392 7.5 68 37 Op 1 6/0.172 + CDS 80417 - 81706 1017 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 69 37 Op 2 . + CDS 81756 - 82502 629 ## COG0593 ATPase involved in DNA replication initiation 70 38 Op 1 6/0.172 - CDS 82640 - 82999 546 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 71 38 Op 2 . - CDS 83020 - 84483 1724 ## COG4783 Putative Zn-dependent protease, contains TPR repeats - Prom 84552 - 84611 3.1 + Prom 84567 - 84626 4.5 72 39 Tu 1 . + CDS 84696 - 85757 1446 ## COG0628 Predicted permease + Term 85761 - 85802 7.3 - Term 85747 - 85790 11.5 73 40 Op 1 1/0.897 - CDS 85795 - 86643 488 ## COG2116 Formate/nitrite family of transporters 74 40 Op 2 . - CDS 86665 - 88677 1540 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 75 40 Op 3 . - CDS 88707 - 89120 326 ## SSON_2571 putative protein processing element 76 40 Op 4 6/0.172 - CDS 89113 - 89871 489 ## COG3260 Ni,Fe-hydrogenase III small subunit 77 40 Op 5 5/0.310 - CDS 89868 - 90413 385 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 78 40 Op 6 7/0.069 - CDS 90423 - 92090 1818 ## COG3261 Ni,Fe-hydrogenase III large subunit 79 40 Op 7 7/0.069 - CDS 92080 - 93660 1368 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 80 40 Op 8 3/0.621 - CDS 93665 - 94315 623 ## COG4237 Hydrogenase 4 membrane component (E) 81 40 Op 9 1/0.897 - CDS 94327 - 95766 1257 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 82 40 Op 10 10/0.034 - CDS 95783 - 96730 910 ## COG0650 Formate hydrogenlyase subunit 4 83 40 Op 11 4/0.517 - CDS 96741 - 98759 1582 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 84 40 Op 12 1/0.897 - CDS 98759 - 99376 305 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 - Prom 99418 - 99477 5.0 85 41 Op 1 4/0.517 - CDS 99629 - 100099 568 ## COG1225 Peroxiredoxin 86 41 Op 2 . - CDS 100099 - 100671 375 ## COG2716 Glycine cleavage system regulatory protein - Prom 100700 - 100759 6.0 + Prom 100559 - 100618 3.0 87 42 Op 1 9/0.034 + CDS 100817 - 101695 774 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 88 42 Op 2 . + CDS 101712 - 102746 827 ## COG3317 Uncharacterized lipoprotein + Term 102754 - 102785 3.2 - Term 102542 - 102572 2.7 89 43 Tu 1 . - CDS 102657 - 102887 75 ## SDY_2665 hypothetical protein - Prom 102915 - 102974 3.6 90 44 Tu 1 . + CDS 102959 - 103672 1163 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase + Prom 103766 - 103825 3.6 91 45 Op 1 4/0.517 + CDS 103909 - 104703 868 ## COG2321 Predicted metalloprotease 92 45 Op 2 . + CDS 104757 - 106733 1341 ## COG1444 Predicted P-loop ATPase fused to an acetyltransferase 93 46 Tu 1 . + CDS 106807 - 107505 795 ## COG0400 Predicted esterase + Term 107597 - 107630 -0.9 94 47 Op 1 . - CDS 107615 - 107815 351 ## G2583_2995 hypothetical protein 95 47 Op 2 9/0.034 - CDS 107843 - 108970 1173 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 96 47 Op 3 . - CDS 108974 - 109330 362 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 109376 - 109435 5.7 - Term 109444 - 109489 2.3 97 48 Tu 1 . - CDS 109569 - 109691 78 ## ECP_2483 hypothetical protein - Prom 109735 - 109794 2.1 - Term 109816 - 109864 7.5 98 49 Tu 1 . - CDS 109869 - 112982 3301 ## COG0841 Cation/multidrug efflux pump - Prom 113082 - 113141 4.7 99 50 Tu 1 . - CDS 113146 - 114846 1259 ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - Prom 114924 - 114983 2.8 + Prom 114906 - 114965 2.3 100 51 Op 1 3/0.621 + CDS 115052 - 117031 1526 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 101 51 Op 2 . + CDS 117099 - 117674 644 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 102 52 Tu 1 . + CDS 117923 - 118843 665 ## B21_02319 hypothetical protein - Term 118865 - 118922 5.5 103 53 Op 1 13/0.000 - CDS 118938 - 120941 2324 ## COG0021 Transketolase 104 53 Op 2 . - CDS 120961 - 121911 1007 ## COG0176 Transaldolase - Prom 122058 - 122117 3.3 + Prom 122020 - 122079 3.5 105 54 Tu 1 . + CDS 122200 - 124479 2653 ## COG0281 Malic enzyme + Term 124495 - 124535 10.0 + Prom 124541 - 124600 5.6 106 55 Op 1 4/0.517 + CDS 124771 - 125106 393 ## COG4810 Ethanolamine utilization protein 107 55 Op 2 4/0.517 + CDS 125119 - 125598 377 ## COG4917 Ethanolamine utilization protein 108 55 Op 3 4/0.517 + CDS 125573 - 126274 748 ## COG4766 Ethanolamine utilization protein 109 55 Op 4 4/0.517 + CDS 126271 - 127074 868 ## COG4812 Ethanolamine utilization cobalamin adenosyltransferase 110 55 Op 5 1/0.897 + CDS 127071 - 128087 842 ## COG0280 Phosphotransacetylase 111 55 Op 6 4/0.517 + CDS 128126 - 128419 481 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein + Term 128427 - 128464 5.6 112 56 Op 1 4/0.517 + CDS 128526 - 128813 239 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 113 56 Op 2 4/0.517 + CDS 128825 - 130228 837 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P 114 56 Op 3 2/0.759 + CDS 130239 - 131075 934 ## COG4820 Ethanolamine utilization protein, possible chaperonin 115 56 Op 4 2/0.759 + CDS 131065 - 132252 1201 ## COG1454 Alcohol dehydrogenase, class IV + Prom 132376 - 132435 1.7 116 57 Op 1 4/0.517 + CDS 132469 - 133695 1637 ## COG3192 Ethanolamine utilization protein 117 57 Op 2 5/0.310 + CDS 133692 - 135095 1454 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition 118 57 Op 3 8/0.069 + CDS 135107 - 136468 1625 ## COG4303 Ethanolamine ammonia-lyase, large subunit 119 57 Op 4 6/0.172 + CDS 136489 - 137376 1022 ## COG4302 Ethanolamine ammonia-lyase, small subunit 120 57 Op 5 4/0.517 + CDS 137386 - 138045 715 ## COG4816 Ethanolamine utilization protein 121 57 Op 6 2/0.759 + CDS 138058 - 138558 431 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 122 57 Op 7 . + CDS 138604 - 139656 999 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 139387 - 139420 -0.6 123 58 Op 1 4/0.517 - CDS 139662 - 140561 685 ## COG0408 Coproporphyrinogen III oxidase 124 58 Op 2 . - CDS 140565 - 141434 806 ## COG0860 N-acetylmuramoyl-L-alanine amidase - Prom 141543 - 141602 4.2 + Prom 141561 - 141620 4.3 125 59 Op 1 . + CDS 141648 - 142073 579 ## COG0456 Acetyltransferases 126 59 Op 2 . + CDS 142060 - 142509 302 ## G2583_2964 hypothetical protein 127 59 Op 3 . + CDS 142570 - 143145 466 ## SSON_2521 hypothetical protein + Term 143201 - 143232 2.1 128 60 Tu 1 . + CDS 143241 - 144140 1074 ## COG2837 Predicted iron-dependent peroxidase + Term 144159 - 144208 1.5 - Term 144152 - 144191 5.3 129 61 Op 1 1/0.897 - CDS 144380 - 145684 1295 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 130 61 Op 2 9/0.034 - CDS 145689 - 147113 1601 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 131 61 Op 3 . - CDS 147117 - 148013 828 ## COG2103 Predicted sugar phosphate isomerase - Prom 148054 - 148113 6.4 + Prom 147986 - 148045 4.2 132 62 Tu 1 . + CDS 148177 - 149034 797 ## COG1737 Transcriptional regulators + Prom 149055 - 149114 3.9 133 63 Tu 1 . + CDS 149163 - 149954 248 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 149967 - 150003 5.1 + Prom 150177 - 150236 4.8 134 64 Op 1 7/0.069 + CDS 150258 - 151274 1398 ## COG4150 ABC-type sulfate transport system, periplasmic component 135 64 Op 2 17/0.000 + CDS 151274 - 152107 1007 ## COG0555 ABC-type sulfate transport system, permease component 136 64 Op 3 17/0.000 + CDS 152107 - 152982 1142 ## COG4208 ABC-type sulfate transport system, permease component 137 64 Op 4 5/0.310 + CDS 152972 - 154069 1386 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 138 64 Op 5 . + CDS 154125 - 155114 552 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Term 155142 - 155178 2.4 139 65 Op 1 . - CDS 155303 - 156037 541 ## COG4884 Uncharacterized protein conserved in bacteria 140 65 Op 2 . - CDS 156070 - 156444 377 ## JW2412 hypothetical protein - Prom 156535 - 156594 2.5 + Prom 156407 - 156466 3.1 141 66 Tu 1 . + CDS 156549 - 157400 853 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase + Term 157406 - 157436 3.0 - Term 157389 - 157429 5.6 142 67 Op 1 10/0.034 - CDS 157443 - 157952 655 ## COG2190 Phosphotransferase system IIA components 143 67 Op 2 25/0.000 - CDS 157993 - 159720 1757 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 144 67 Op 3 6/0.172 - CDS 159765 - 160022 377 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 160186 - 160245 5.8 - Term 160350 - 160377 0.1 145 68 Tu 1 8/0.069 - CDS 160406 - 161377 702 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 161410 - 161469 4.4 - Term 161490 - 161522 4.1 146 69 Tu 1 . - CDS 161562 - 162197 609 ## COG2981 Uncharacterized protein involved in cysteine biosynthesis - Prom 162362 - 162421 3.3 + Prom 162321 - 162380 2.7 147 70 Op 1 7/0.069 + CDS 162556 - 163539 724 ## COG3115 Cell division protein + Term 163571 - 163599 1.3 148 70 Op 2 3/0.621 + CDS 163610 - 165625 2065 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 149 70 Op 3 . + CDS 165627 - 165845 278 ## COG3530 Uncharacterized protein conserved in bacteria + Term 165850 - 165892 -0.5 - Term 165786 - 165831 3.1 150 71 Tu 1 . - CDS 165842 - 166840 768 ## COG0385 Predicted Na+-dependent transporter - Prom 166897 - 166956 5.0 + Prom 166845 - 166904 3.7 151 72 Tu 1 . + CDS 166930 - 167856 579 ## COG0583 Transcriptional regulator - Term 167846 - 167893 2.5 152 73 Tu 1 . - CDS 167895 - 168659 806 ## ECS88_2597 hypothetical protein - Prom 168874 - 168933 3.9 + Prom 168643 - 168702 3.8 153 74 Op 1 1/0.897 + CDS 168908 - 169741 937 ## COG0005 Purine nucleoside phosphorylase 154 74 Op 2 . + CDS 169801 - 171057 925 ## COG0477 Permeases of the major facilitator superfamily + Term 171066 - 171100 4.3 155 75 Op 1 . + CDS 171110 - 171268 129 ## EcSMS35_2559 hypothetical protein 156 75 Op 2 . + CDS 171309 - 172193 496 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|223713596|gb|ACDM01000002.1| GENE 1 656 - 916 287 86 aa, chain - ## HITS:1 COG:yfhL KEGG:ns NR:ns ## COG: yfhL COG1145 # Protein_GI_number: 16130487 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1 86 1 86 86 153 100.0 6e-38 MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI VKDPAHVETEEQLWDKFVLMHHADKI >gi|223713596|gb|ACDM01000002.1| GENE 2 972 - 1820 882 282 aa, chain - ## HITS:1 COG:ECs3427 KEGG:ns NR:ns ## COG: ECs3427 COG1737 # Protein_GI_number: 15832681 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 282 25 306 306 525 100.0 1e-149 MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA SISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV >gi|223713596|gb|ACDM01000002.1| GENE 3 2029 - 2664 500 211 aa, chain + ## HITS:1 COG:STM2569 KEGG:ns NR:ns ## COG: STM2569 COG0560 # Protein_GI_number: 16765889 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 365 91.0 1e-101 MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAAR WPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITG SPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYS GYSDSNQDNPLLYFCQHRWRVTPRGELQQLE >gi|223713596|gb|ACDM01000002.1| GENE 4 2722 - 3225 458 167 aa, chain + ## HITS:1 COG:yfhC KEGG:ns NR:ns ## COG: yfhC COG0590 # Protein_GI_number: 16130484 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Escherichia coli K12 # 1 167 12 178 178 337 99.0 5e-93 MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEI MALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD >gi|223713596|gb|ACDM01000002.1| GENE 5 3222 - 4778 1748 518 aa, chain - ## HITS:1 COG:yfhD KEGG:ns NR:ns ## COG: yfhD COG4623 # Protein_GI_number: 16130483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein # Organism: Escherichia coli K12 # 47 518 1 472 472 913 99.0 0 MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEIN GKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQ PGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVD DKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNT LSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAE EIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYL QDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQ KPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTE LGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN >gi|223713596|gb|ACDM01000002.1| GENE 6 5039 - 8923 4409 1294 aa, chain + ## HITS:1 COG:ECs3423_1 KEGG:ns NR:ns ## COG: ECs3423_1 COG0046 # Protein_GI_number: 15832677 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Escherichia coli O157:H7 # 1 984 2 985 985 1997 99.0 0 MEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLNAPLNDDEHAQLERLLKY GPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVNRLERGVAYYIEAGTLTN EQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTSVDLLGQGRQALIDANLRLGLA LAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGEQQPKSLFKMI KNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKVETHNHPTA ISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVT ALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIR ADHVQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRC QEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDEPGMSPLE IWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLP LDVLLGKTPKMTRDVQTLKAKGDALAREGITIADAVKRVLHLPTVAEKTFLVTIGDRSVT GMVARDQMVGPWQVPVANCAVTTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALT NIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSM KTRWQEGNEEREMTSPLSLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGAT ALAQVYRQLGDKPADVRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAG HCGIDADIATLGDDRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSG DRFVITANGQTVFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKL SFDINEDVAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTG LEDFHALVACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMM SNLRELIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRV EVRDAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHP ERVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG >gi|223713596|gb|ACDM01000002.1| GENE 7 9526 - 10908 995 460 aa, chain + ## HITS:1 COG:yfhK KEGG:ns NR:ns ## COG: yfhK COG0642 # Protein_GI_number: 16130481 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 15 460 51 496 496 845 100.0 0 MLAFLLILLPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQY CVLDDPTLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLHNLAQLQCNNSGPDAAA AARLEAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTR MIIGPVKNIERMINRLGEGRSLGNSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLR HLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQ ADSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSN AVHYGAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSG LGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK >gi|223713596|gb|ACDM01000002.1| GENE 8 11073 - 11786 504 237 aa, chain + ## HITS:1 COG:no KEGG:EcHS_A2708 NR:ns ## KEGG: EcHS_A2708 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 237 3 239 239 410 99.0 1e-113 MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIPVYQLADYLSTECSDIW ALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQNTFKQGILLADAKITPYE RRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDSELDTLRQQ HHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDTPHESEKPAPSTHEVTPDEP >gi|223713596|gb|ACDM01000002.1| GENE 9 11776 - 13110 1283 444 aa, chain + ## HITS:1 COG:ECs3420 KEGG:ns NR:ns ## COG: ECs3420 COG2204 # Protein_GI_number: 15832674 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli O157:H7 # 1 444 1 444 444 837 100.0 0 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM AGRNRTEFYKLLSRHELDANDFKE >gi|223713596|gb|ACDM01000002.1| GENE 10 13171 - 13509 503 112 aa, chain + ## HITS:1 COG:ECs3419 KEGG:ns NR:ns ## COG: ECs3419 COG0347 # Protein_GI_number: 15832673 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 191 100.0 4e-49 MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK IEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI >gi|223713596|gb|ACDM01000002.1| GENE 11 13554 - 14744 1303 396 aa, chain - ## HITS:1 COG:hmp_2 KEGG:ns NR:ns ## COG: hmp_2 COG1018 # Protein_GI_number: 16130477 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 150 396 1 247 247 517 100.0 1e-146 MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNA IAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFSPGQEVLDAW GKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAV AEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKREEGGQVSNWLHNHANVG DVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGD VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFY LCGPVGFMQFTAKQLVDLGVKQENIHYECFGPHKVL >gi|223713596|gb|ACDM01000002.1| GENE 12 15072 - 16325 1576 417 aa, chain + ## HITS:1 COG:glyA KEGG:ns NR:ns ## COG: glyA COG0112 # Protein_GI_number: 16130476 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Escherichia coli K12 # 1 417 1 417 417 811 100.0 0 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA >gi|223713596|gb|ACDM01000002.1| GENE 13 16523 - 17716 1116 397 aa, chain - ## HITS:1 COG:yphH KEGG:ns NR:ns ## COG: yphH COG1940 # Protein_GI_number: 16130475 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1 397 3 399 399 818 100.0 0 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI >gi|223713596|gb|ACDM01000002.1| GENE 14 17834 - 21115 3042 1093 aa, chain + ## HITS:1 COG:no KEGG:JW5405 NR:ns ## KEGG: JW5405 # Name: yphG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 1093 1 1093 1093 2224 99.0 0 MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQA VWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWP QHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNG NATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVD ISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAW DKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIK LQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLT IELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSP FDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHSLNKNPQCGQASLI RASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACP TNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLC QGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDV FPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADG WRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENN LEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQ HLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRL AATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEAD FFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAAL FTTVMPFIFNRVH >gi|223713596|gb|ACDM01000002.1| GENE 15 21212 - 22195 1095 327 aa, chain + ## HITS:1 COG:yphF KEGG:ns NR:ns ## COG: yphF COG1879 # Protein_GI_number: 16130473 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 327 1 327 327 605 100.0 1e-173 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK VIQVPIDLYTKTEDGKQWLATHVDGLP >gi|223713596|gb|ACDM01000002.1| GENE 16 22218 - 23729 176 503 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 262 480 7 219 318 72 25 1e-11 MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSE RPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNGM IDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSL ASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTHH IVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAG RSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGIIPWLGVDEN TVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAASSETPIGTLSGGNQQKVVIGRWVY AASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLVCDRILLLQHG TFSQEFHAPVNVDELMSAILSVH >gi|223713596|gb|ACDM01000002.1| GENE 17 23754 - 24752 1171 332 aa, chain + ## HITS:1 COG:ECs3412 KEGG:ns NR:ns ## COG: ECs3412 COG1172 # Protein_GI_number: 15832666 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 332 1 332 332 492 99.0 1e-139 MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDA ATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGT LAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSAL IMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGI NSFFQQVVRGVIIVVAVLANILLTQRSSKAKR >gi|223713596|gb|ACDM01000002.1| GENE 18 24827 - 25879 1062 350 aa, chain + ## HITS:1 COG:yphC KEGG:ns NR:ns ## COG: yphC COG1063 # Protein_GI_number: 16130470 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 350 15 364 364 724 100.0 0 MLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLY QGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYG WQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGL GPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGG ADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLF HMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD >gi|223713596|gb|ACDM01000002.1| GENE 19 25891 - 26763 760 290 aa, chain + ## HITS:1 COG:yphB KEGG:ns NR:ns ## COG: yphB COG2017 # Protein_GI_number: 16130469 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1 290 1 290 290 596 100.0 1e-170 MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCFPLVPFANRVSGN RFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLCLVYEHRSGVYHYRVSQAF HLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCE QLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPA FDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEWL >gi|223713596|gb|ACDM01000002.1| GENE 20 26811 - 27233 460 140 aa, chain - ## HITS:1 COG:yphA KEGG:ns NR:ns ## COG: yphA COG2259 # Protein_GI_number: 16130468 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 140 25 164 164 236 100.0 7e-63 MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAII AVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSI AGAFLLLAITGPGAISLDRR >gi|223713596|gb|ACDM01000002.1| GENE 21 27330 - 28532 1059 400 aa, chain - ## HITS:1 COG:ECs3408 KEGG:ns NR:ns ## COG: ECs3408 COG0446 # Protein_GI_number: 15832662 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 746 97.0 0 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ QVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDA LGERCFTLRHAGDAARLREVLQPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVM GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS ANEQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQ IAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVL IGAVTLNQGREIRPIRKWIQSGKTFDAKLLIDENIALKSL >gi|223713596|gb|ACDM01000002.1| GENE 22 28542 - 29354 808 270 aa, chain - ## HITS:1 COG:hcaB KEGG:ns NR:ns ## COG: hcaB COG1028 # Protein_GI_number: 16130466 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 270 1 270 270 510 100.0 1e-144 MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGN VTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPAETLETGFHELFNVNVLGY LLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAPKVRV NGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAILPLQFFPQPADFTGPYVMLTSRR NNRALSGVMINADAGLAIRGIRHVAAGLDL >gi|223713596|gb|ACDM01000002.1| GENE 23 29351 - 29671 148 106 aa, chain - ## HITS:1 COG:ECs3406 KEGG:ns NR:ns ## COG: ECs3406 COG2146 # Protein_GI_number: 15832660 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1 106 1 106 106 209 100.0 1e-54 MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGYLEDDATV ECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLPEAQP >gi|223713596|gb|ACDM01000002.1| GENE 24 29671 - 30189 351 172 aa, chain - ## HITS:1 COG:hcaA2 KEGG:ns NR:ns ## COG: hcaA2 COG5517 # Protein_GI_number: 16130464 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Small subunit of phenylpropionate dioxygenase # Organism: Escherichia coli K12 # 1 172 1 172 172 320 100.0 1e-87 MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTMRTTVNAQTRDRRKGVQ PPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNCQISETDIPNVFAVRVNYL LYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQAVITSHNLSVLF >gi|223713596|gb|ACDM01000002.1| GENE 25 30186 - 31547 1289 453 aa, chain - ## HITS:1 COG:ECs3404 KEGG:ns NR:ns ## COG: ECs3404 COG4638 # Protein_GI_number: 15832658 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 952 100.0 0 MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFN TYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELID VPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSAPGLRDYLGDIAWYLDGMLDR REGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSHASAVQVLGAKDDGSDKRLGDGQ TARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWVDGAVSSYYRETYAEAEQRLGEVRA LRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVEVWAFCITDKAASDEVKAAFENSATRA FGPAGFLEQDDSENWCEIQKLLKGHRARNSKLCLEMGLGQEKRRDDGIPGITNYIFSETA ARGMYQRWADLLSSESWQEVLDKTAAYQQEVMK >gi|223713596|gb|ACDM01000002.1| GENE 26 31683 - 32573 759 296 aa, chain + ## HITS:1 COG:hcaR KEGG:ns NR:ns ## COG: hcaR COG0583 # Protein_GI_number: 16130462 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 296 1 296 296 568 100.0 1e-162 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAA GECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLRQPDTL IELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKEI TAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTL IPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA >gi|223713596|gb|ACDM01000002.1| GENE 27 32733 - 33872 951 379 aa, chain + ## HITS:1 COG:hcaT KEGG:ns NR:ns ## COG: hcaT COG0477 # Protein_GI_number: 16130461 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 379 1 379 379 636 100.0 0 MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLLLGAGLVARFLGSLLIA PRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIGFNLFFSPLVPLTDALANT WQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVILALLTLGVASMLLGFLIRPTI QPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVG YLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVVRWGIMGATTALPWLIVVQILH CGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWV MALVALPAMFLRPKVVPSC >gi|223713596|gb|ACDM01000002.1| GENE 28 33864 - 35048 824 394 aa, chain - ## HITS:1 COG:ECs3401 KEGG:ns NR:ns ## COG: ECs3401 COG3711 # Protein_GI_number: 15832655 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1 394 40 433 433 756 100.0 0 MATFSELNGVDDDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLR RGFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFL CLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMA LLFSMLRVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALN RSLFAIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQ ENDLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA >gi|223713596|gb|ACDM01000002.1| GENE 29 35335 - 36189 772 284 aa, chain - ## HITS:1 COG:yfhR KEGG:ns NR:ns ## COG: yfhR COG1073 # Protein_GI_number: 16130459 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1 284 10 293 293 587 100.0 1e-168 MALPVNKRVPKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGPDPWSAESVEFTAKDGT RLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLPERNFNVFMFDYRGFGKSK GTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGANILDVIGRGDREGIRAVILD STFASYATIANQMIPGSGYLLDESYSGENYIASVSPIPLLLIHGKADHVIPWQHSEKLYS LAKEPKRLILIPDGEHIDAFSDRHGDVYREQMVDFILSALNPQN >gi|223713596|gb|ACDM01000002.1| GENE 30 36334 - 37137 1033 267 aa, chain - ## HITS:1 COG:ECs3399 KEGG:ns NR:ns ## COG: ECs3399 COG0483 # Protein_GI_number: 15832653 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Escherichia coli O157:H7 # 1 267 1 267 267 530 100.0 1e-150 MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYP QHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPM RNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECA DFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYMLTG NIVAGNPRVVKAMLANMRDELSDALKR >gi|223713596|gb|ACDM01000002.1| GENE 31 37256 - 37996 1028 246 aa, chain + ## HITS:1 COG:yfhQ KEGG:ns NR:ns ## COG: yfhQ COG0565 # Protein_GI_number: 16130457 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Escherichia coli K12 # 1 246 1 246 246 483 100.0 1e-136 MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNA HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGL TNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLV DDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQN KGNKAE >gi|223713596|gb|ACDM01000002.1| GENE 32 38448 - 38936 524 162 aa, chain + ## HITS:1 COG:ECs3397 KEGG:ns NR:ns ## COG: ECs3397 COG1959 # Protein_GI_number: 15832651 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 278 100.0 4e-75 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGF LNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKLRA >gi|223713596|gb|ACDM01000002.1| GENE 33 39048 - 40262 1706 404 aa, chain + ## HITS:1 COG:ECs3396 KEGG:ns NR:ns ## COG: ECs3396 COG1104 # Protein_GI_number: 15832650 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Escherichia coli O157:H7 # 1 404 9 412 412 820 100.0 0 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR SGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH >gi|223713596|gb|ACDM01000002.1| GENE 34 40290 - 40676 588 128 aa, chain + ## HITS:1 COG:ECs3395 KEGG:ns NR:ns ## COG: ECs3395 COG0822 # Protein_GI_number: 15832649 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Escherichia coli O157:H7 # 1 128 1 128 128 237 100.0 4e-63 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD YKSKREAK >gi|223713596|gb|ACDM01000002.1| GENE 35 40693 - 41016 461 107 aa, chain + ## HITS:1 COG:ECs3394 KEGG:ns NR:ns ## COG: ECs3394 COG0316 # Protein_GI_number: 15832648 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 107 1 107 107 207 100.0 3e-54 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV KVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV >gi|223713596|gb|ACDM01000002.1| GENE 36 41112 - 41627 605 171 aa, chain + ## HITS:1 COG:ECs3393 KEGG:ns NR:ns ## COG: ECs3393 COG1076 # Protein_GI_number: 15832647 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Escherichia coli O157:H7 # 1 171 1 171 171 271 100.0 5e-73 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT LRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKR VKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSSAEQLEEKLLDF >gi|223713596|gb|ACDM01000002.1| GENE 37 41644 - 43494 2376 616 aa, chain + ## HITS:1 COG:ECs3392 KEGG:ns NR:ns ## COG: ECs3392 COG0443 # Protein_GI_number: 15832646 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli O157:H7 # 1 616 1 616 616 1090 100.0 0 MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQ QQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETA AGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVL RLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDD FDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISREQF NELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSI DPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARA QDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGL LSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL ESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRM DQSVRRALKGHSVDEV >gi|223713596|gb|ACDM01000002.1| GENE 38 43496 - 43831 385 111 aa, chain + ## HITS:1 COG:ECs3391 KEGG:ns NR:ns ## COG: ECs3391 COG0633 # Protein_GI_number: 15832645 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli O157:H7 # 1 111 1 111 111 207 100.0 3e-54 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFD SLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAREH >gi|223713596|gb|ACDM01000002.1| GENE 39 43843 - 44043 376 66 aa, chain + ## HITS:1 COG:ECs3390 KEGG:ns NR:ns ## COG: ECs3390 COG2975 # Protein_GI_number: 15832644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 66 1 66 66 114 100.0 5e-26 MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLV WLDEAE >gi|223713596|gb|ACDM01000002.1| GENE 40 44221 - 45504 1499 427 aa, chain + ## HITS:1 COG:pepB KEGG:ns NR:ns ## COG: pepB COG0260 # Protein_GI_number: 16130448 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Escherichia coli K12 # 1 427 30 456 456 855 100.0 0 MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQ LSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEE LGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNP TGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKR VKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMII DAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFA ELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRT IANLLTA >gi|223713596|gb|ACDM01000002.1| GENE 41 45646 - 46422 701 258 aa, chain + ## HITS:1 COG:no KEGG:SFV_2570 NR:ns ## KEGG: SFV_2570 # Name: sseB # Def: enhanced serine sensitivity protein SseB # Organism: S.flexneri_8401 # Pathway: not_defined # 1 258 4 261 261 484 100.0 1e-135 MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGEAVVEDSALDLQHWEKE DGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETLFLNAKLPTGKEFMPREIS LLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVKRAFICSIKENE EAQPNLLIGIEADGDIEEIIQATGSVATDTLPGDEPIDICQVKKGEKGISHFITEHIAPF YERRWGGFLRDFKQNRII >gi|223713596|gb|ACDM01000002.1| GENE 42 47239 - 48084 841 281 aa, chain - ## HITS:1 COG:sseA KEGG:ns NR:ns ## COG: sseA COG2897 # Protein_GI_number: 16130446 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 281 54 334 334 569 100.0 1e-162 MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSD HTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILG GGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARF NAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGS GVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEPVK >gi|223713596|gb|ACDM01000002.1| GENE 43 48291 - 49388 870 365 aa, chain + ## HITS:1 COG:yfhM KEGG:ns NR:ns ## COG: yfhM COG2373 # Protein_GI_number: 16130445 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli K12 # 1 350 1 350 1653 671 100.0 0 MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSENASSAKLSVPERQKLAQ QSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIHVVDKKSGKVDGAWELSDN LKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTITTRDIQPSVGFASRGSLLPGK VVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRNSLANWQSDKLLQMADLVYTGRF DLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAGRYDYSNPATLFTLSDIGVSAHRYH NRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQATSDAQGHVQLENDKNAHYCWRVKTVR QRYSI >gi|223713596|gb|ACDM01000002.1| GENE 44 49349 - 53251 3589 1300 aa, chain + ## HITS:1 COG:yfhM KEGG:ns NR:ns ## COG: yfhM COG2373 # Protein_GI_number: 16130445 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli K12 # 1 1300 354 1653 1653 2570 99.0 0 MARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDAD GKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYHFTWPLDSNAATGMWHIRANTGDNQYR MWDFHVEDFMPERMALNLTGEKTPLTPKDEVKFSVVGYYLYGAPANGNTLQGQLFLRPLR EAVSALPGFEFGDIAAENLSRTLDEVQLTLDDKGRGEVSTESQWKETHSPLQVIFQGSLL ESGGRPVTRRAEQAIWPADALPGIRPQFASKSVYDYRTDSTVKQPIVDEGSNAAFDIVYS DAQGVKKAVSGLQVRLIRERRDYYWNWSEDEGWQSQFDQKDLIENEQTLDLKADETGKVS FPVEWGAYRLEVKAPNEAVSSVRFWAGYSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTI KLHIAAPTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPVDKTWNRHDLYLSTLVVRPG DKSRSATPKRAVGVLHLPLGDENRRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVN VLVSAVDSGVLNITDYVTPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDE LKRGGKPPVNHVNIVVQQALPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNES KVIVAAPVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAV ELAPGVRTTLFIPVRALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVN YGTALQPGETWAIPADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTAS GLFPSLYTNAAQLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWL TAYVMDFLVRAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAA LVLARQQKAPLGALREIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNS DERIWLGDYSSSLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFL AARTIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGY PQSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLPA GLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPVTLV YLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP >gi|223713596|gb|ACDM01000002.1| GENE 45 53252 - 55564 1150 770 aa, chain + ## HITS:1 COG:pbpC KEGG:ns NR:ns ## COG: pbpC COG4953 # Protein_GI_number: 16130444 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein PbpC # Organism: Escherichia coli K12 # 1 770 1 770 770 1486 100.0 0 MPRLLTKRGCWITLAAAPFLLFLAAWGADKLWPLPLHEVNPARVVVAQDGTPLWRFADAD GIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLT MQVARLLDPHPKTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAY LGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAARNKVLERMAVQGVWSREQVKES REEPIWLAPRQMPQLAPLFSRMMLGKSKSDKITTTLDAGLQRRLEELAQNWKGRLPPRSS LAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALDEGLIHP ASLLQDVPRRTGDYRPGNFDSGFHGPISMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNV GLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARHGKAGKLRLQPDDPLLERPLMSS GAAWIIRRIMADEAQPLPDSALPRVAPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPD GTPVVGQFGFASAVPLLNQVNNILLSRSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNC RRRLATWLLDGSQPPTLLLPEQEGINGIRFPIWLDENGKRVAADCPQARQEMINVWPLPL EPWLPASERRAVRLPPASTSCPPYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSG GAGERWWFLNGEPLTERGRNVTLHLTDKGDYQLLVMDDVGQIATVKFVMQ >gi|223713596|gb|ACDM01000002.1| GENE 46 55713 - 56144 510 143 aa, chain + ## HITS:1 COG:ECs3380 KEGG:ns NR:ns ## COG: ECs3380 COG0105 # Protein_GI_number: 15832634 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Escherichia coli O157:H7 # 1 143 1 143 143 277 100.0 4e-75 MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFF DGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSD SVESAAREIAYFFGEGEVCPRTR >gi|223713596|gb|ACDM01000002.1| GENE 47 56294 - 57448 1374 384 aa, chain + ## HITS:1 COG:yfgB KEGG:ns NR:ns ## COG: yfgB COG0820 # Protein_GI_number: 16130442 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Escherichia coli K12 # 1 384 1 384 384 790 100.0 0 MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM TDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVS SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDE IRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLK DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAG DVIDRTKRTLRKRMQGEAIDIKAV >gi|223713596|gb|ACDM01000002.1| GENE 48 57733 - 58746 596 337 aa, chain + ## HITS:1 COG:ECs3378 KEGG:ns NR:ns ## COG: ECs3378 COG1426 # Protein_GI_number: 15832632 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 337 1 337 337 545 99.0 1e-155 MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTP PASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT DQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGA PAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ >gi|223713596|gb|ACDM01000002.1| GENE 49 58773 - 59891 1209 372 aa, chain + ## HITS:1 COG:ECs3377 KEGG:ns NR:ns ## COG: ECs3377 COG0821 # Protein_GI_number: 15832631 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Escherichia coli O157:H7 # 1 372 1 372 372 711 100.0 0 MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVR VSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRM VVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSV KASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRVSL AADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDV SIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGVRKDRLDNNDMIDQLEARIRAKASQLD EARRIDVQQVEK >gi|223713596|gb|ACDM01000002.1| GENE 50 60002 - 61276 1488 424 aa, chain + ## HITS:1 COG:ECs3376 KEGG:ns NR:ns ## COG: ECs3376 COG0124 # Protein_GI_number: 15832630 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 424 1 424 424 860 100.0 0 MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVT DVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG RYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDA LVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGL CKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRAT PAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKL MTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR TLLG >gi|223713596|gb|ACDM01000002.1| GENE 51 61294 - 61914 672 206 aa, chain + ## HITS:1 COG:ECs3375 KEGG:ns NR:ns ## COG: ECs3375 COG2976 # Protein_GI_number: 15832629 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 344 99.0 5e-95 MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNSHQVDSARSASLAYQNA VTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKNELEKAAAQLQQGLADTSD ENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIVADLRGEALLSKGDKQGARSA WEAGVKSDVTPALSEMMQMKINNLSI >gi|223713596|gb|ACDM01000002.1| GENE 52 61925 - 63103 1179 392 aa, chain + ## HITS:1 COG:ECs3374 KEGG:ns NR:ns ## COG: ECs3374 COG1520 # Protein_GI_number: 15832628 # Func_class: S Function unknown # Function: FOG: WD40-like repeat # Organism: Escherichia coli O157:H7 # 13 392 13 392 392 719 99.0 0 MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFY SNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGA VKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVD QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ KVDSSGFQTEPVAADGKLLIQAKDGTVYSITR >gi|223713596|gb|ACDM01000002.1| GENE 53 63221 - 64693 2033 490 aa, chain + ## HITS:1 COG:ECs3373 KEGG:ns NR:ns ## COG: ECs3373 COG1160 # Protein_GI_number: 15832627 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Escherichia coli O157:H7 # 1 490 14 503 503 953 100.0 0 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKT DGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWA QFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS IYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISD QDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSG VGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV VIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRK RLMKHIKKNK >gi|223713596|gb|ACDM01000002.1| GENE 54 64763 - 64978 143 71 aa, chain + ## HITS:1 COG:no KEGG:S2728 NR:ns ## KEGG: S2728 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 71 13 83 83 126 97.0 2e-28 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL ISKKRVEFVLA >gi|223713596|gb|ACDM01000002.1| GENE 55 64975 - 66345 1109 456 aa, chain - ## HITS:1 COG:xseA KEGG:ns NR:ns ## COG: xseA COG1570 # Protein_GI_number: 16130434 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Escherichia coli K12 # 1 456 1 456 456 818 100.0 0 MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQQKYEQLKAK LQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPAAVQGDD APGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFNDERVARAIFTSRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQSTRQRLEMAMDYYLANRTRRFTQIH HRLQQQHPQLRLARQQTMLERLQKRMSFALENQLKRTGQQQQRLTQRLNQQNPQPKIHRA QTRIQQLEYRLAETLRAQLSATRERFGNAVTHLEAVSPLSTLARGYSVTTATDGNVLKKV KQVKAGEMLTTRLEDGWIESEVKNIQPVKKSRKKVH >gi|223713596|gb|ACDM01000002.1| GENE 56 66507 - 67973 1814 488 aa, chain + ## HITS:1 COG:YPO2871_3 KEGG:ns NR:ns ## COG: YPO2871_3 COG0516 # Protein_GI_number: 16123063 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Yersinia pestis # 207 486 1 280 281 478 94.0 1e-134 MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIA LAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAG YPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRV EKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRLRVGAAVGAGAGNEERVDALVAA GVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIG PGSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMV GSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGR VAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRISGAGIQESHVHDVTITKE SPNYRLGS >gi|223713596|gb|ACDM01000002.1| GENE 57 68042 - 69619 1954 525 aa, chain + ## HITS:1 COG:ZguaA_2 KEGG:ns NR:ns ## COG: ZguaA_2 COG0519 # Protein_GI_number: 15803031 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Escherichia coli O157:H7 EDL933 # 207 525 1 319 319 658 99.0 0 MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGP ESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSA LVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQF HPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGDDKVILGLSGGVDS SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAG ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN VGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEY CDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDF MTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE >gi|223713596|gb|ACDM01000002.1| GENE 58 69712 - 70251 637 179 aa, chain - ## HITS:1 COG:no KEGG:ECP_2508 NR:ns ## KEGG: ECP_2508 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 179 1 179 179 176 99.0 3e-43 MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNREIQQEKQ RRANAQAAANKRAATAAANKKARQDKLDAEASADKKRDQSYEDELRSLEIQKQKLALAKE EARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGRDLMKSVGKAEENKSDSWFN >gi|223713596|gb|ACDM01000002.1| GENE 59 70267 - 70782 381 171 aa, chain - ## HITS:1 COG:no KEGG:SSON_2587 NR:ns ## KEGG: SSON_2587 # Name: not_defined # Def: putative outer membrane lipoprotein # Organism: S.sonnei # Pathway: not_defined # 1 171 2 172 172 266 100.0 3e-70 MKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVD NSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVGAAAGSMVNDKTLVE GVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS >gi|223713596|gb|ACDM01000002.1| GENE 60 71096 - 71287 131 63 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_2653 NR:ns ## KEGG: EcSMS35_2653 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 63 1 63 63 94 100.0 8e-19 MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESP VQR >gi|223713596|gb|ACDM01000002.1| GENE 61 71132 - 71422 109 96 aa, chain + ## HITS:1 COG:no KEGG:EC55989_2789 NR:ns ## KEGG: EC55989_2789 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 96 1 96 96 186 100.0 3e-46 MLSFFFALMVLPGTDGRVDKTAKEEDKADEQYDTGHATVKSVSFSHTGCLTHKRFLEVCP TLWTVLTLRHNRTKWSILRYVKKRQWIHILMLWKLI >gi|223713596|gb|ACDM01000002.1| GENE 62 71639 - 73882 1542 747 aa, chain + ## HITS:1 COG:yfgF_3 KEGG:ns NR:ns ## COG: yfgF_3 COG2200 # Protein_GI_number: 16130428 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 476 747 1 272 272 555 100.0 1e-157 MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFF SWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRL ISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGV PLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTI FSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSS SYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLR IPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITA LDSHLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQR RGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELIS PDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVS QLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKN VNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGID YMQGYLIGKPQPLIDTLNEIEPIRESA >gi|223713596|gb|ACDM01000002.1| GENE 63 73921 - 75462 1463 513 aa, chain - ## HITS:1 COG:ECs3364 KEGG:ns NR:ns ## COG: ECs3364 COG0248 # Protein_GI_number: 15832618 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Escherichia coli O157:H7 # 1 513 1 513 513 1009 100.0 0 MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEE AMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNE EARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGG VINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPE RLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREG VLYEMEGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLE ALLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHRKAIKLDD LPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNA LVLLDLEKEQEYWEGVAGWRLKIEEESTPEIAA >gi|223713596|gb|ACDM01000002.1| GENE 64 75467 - 77533 2012 688 aa, chain - ## HITS:1 COG:ECs3363 KEGG:ns NR:ns ## COG: ECs3363 COG0855 # Protein_GI_number: 15832617 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Escherichia coli O157:H7 # 1 688 1 688 688 1347 100.0 0 MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRR IIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEMARNQIFLINERQLSVNQQ NWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVEIIRGDTIRYALLEIPSDKVP RFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEME ASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDSIVPGGRYHNFKDF INFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFDAIRERDVLLYYPYHTFEHVLELLRQA SFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTE AGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADARI TNEVRRVFNFIENPYRPVTFDYLMVSPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNL VDKGLVDRLYAASSSGVPVNLLVRGMCSLIPNLEGISDNIRAISIVDRYLEHDRVYIFEN GGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSN RYVPRGNRRKVRAQLAIYDYIKSLEQPE >gi|223713596|gb|ACDM01000002.1| GENE 65 77705 - 78343 692 212 aa, chain - ## HITS:1 COG:purN KEGG:ns NR:ns ## COG: purN COG0299 # Protein_GI_number: 16130425 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Escherichia coli K12 # 1 212 1 212 212 431 100.0 1e-121 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV ISWFADGRLKMHENAAWLDGQRLPPQGYAADE >gi|223713596|gb|ACDM01000002.1| GENE 66 78343 - 79380 1238 345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 2 345 7 356 356 481 68 1e-135 MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVL VSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAS AVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDV LIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPLADHLLAPTRIYVKSVLELIEKV DVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNC GVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVIE >gi|223713596|gb|ACDM01000002.1| GENE 67 79705 - 80331 855 208 aa, chain + ## HITS:1 COG:ECs3360 KEGG:ns NR:ns ## COG: ECs3360 COG0035 # Protein_GI_number: 15832614 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1 208 10 217 217 394 100.0 1e-110 MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGP VEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN IDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYT ASIDQGLNEHGYIIPGLGDAGDKIFGTK >gi|223713596|gb|ACDM01000002.1| GENE 68 80417 - 81706 1017 429 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 3 423 2 428 447 396 47 1e-109 MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFI CKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLF PPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFL AIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIA EHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRV YSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDY NKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVLRPEEVVLD AEDADITDK >gi|223713596|gb|ACDM01000002.1| GENE 69 81756 - 82502 629 248 aa, chain + ## HITS:1 COG:ECs3358 KEGG:ns NR:ns ## COG: ECs3358 COG0593 # Protein_GI_number: 15832612 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 493 100.0 1e-140 MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGY IYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIE CIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL SDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIP FVKEILKL >gi|223713596|gb|ACDM01000002.1| GENE 70 82640 - 82999 546 119 aa, chain - ## HITS:1 COG:yfgD KEGG:ns NR:ns ## COG: yfgD COG1393 # Protein_GI_number: 16130420 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1 119 1 119 119 207 100.0 4e-54 MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKILGMNSAREL MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVANGKARIGRPPEQVLEIVG >gi|223713596|gb|ACDM01000002.1| GENE 71 83020 - 84483 1724 487 aa, chain - ## HITS:1 COG:yfgC KEGG:ns NR:ns ## COG: yfgC COG4783 # Protein_GI_number: 16130419 # Func_class: R General function prediction only # Function: Putative Zn-dependent protease, contains TPR repeats # Organism: Escherichia coli K12 # 1 487 1 487 487 872 100.0 0 MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQL RGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSAL FRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMA ALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPP EILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGMYNSGRNQLTSDLLDEW AKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKAN EAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAE AALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYDARIDQLRQLQER FKPYTKM >gi|223713596|gb|ACDM01000002.1| GENE 72 84696 - 85757 1446 353 aa, chain + ## HITS:1 COG:ECs3355 KEGG:ns NR:ns ## COG: ECs3355 COG0628 # Protein_GI_number: 15832609 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 353 1 353 353 588 100.0 1e-168 MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQ SIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRR YPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDK EQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSL LLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVL FSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE >gi|223713596|gb|ACDM01000002.1| GENE 73 85795 - 86643 488 282 aa, chain - ## HITS:1 COG:focB KEGG:ns NR:ns ## COG: focB COG2116 # Protein_GI_number: 16130417 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1 282 1 282 282 507 100.0 1e-144 MRNKLSFDLQLSARKAAIAERIAAHKIARSKVSVFLMAMSAGVFMAIGFTFYLSVIADAP SSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRGVISWRTWLINALLVACGN LAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWM SYCGRSLCDKIVAMILPITLFVASGFEHCIANLFVIPFAIAIRHFAPPPFWQLAHSSADN FPALTVSHFITANLLPVMLGNIIGGAVLVSMCYRAIYLRQEP >gi|223713596|gb|ACDM01000002.1| GENE 74 86665 - 88677 1540 670 aa, chain - ## HITS:1 COG:hyfR KEGG:ns NR:ns ## COG: hyfR COG3604 # Protein_GI_number: 16130416 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 8 670 1 663 663 1316 100.0 0 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ RLGISVREVL >gi|223713596|gb|ACDM01000002.1| GENE 75 88707 - 89120 326 137 aa, chain - ## HITS:1 COG:no KEGG:SSON_2571 NR:ns ## KEGG: SSON_2571 # Name: not_defined # Def: putative protein processing element # Organism: S.sonnei # Pathway: not_defined # 1 137 22 158 158 272 99.0 2e-72 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL DEIVQEPAIYLMARKIA >gi|223713596|gb|ACDM01000002.1| GENE 76 89113 - 89871 489 252 aa, chain - ## HITS:1 COG:hyfI KEGG:ns NR:ns ## COG: hyfI COG3260 # Protein_GI_number: 16130414 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III small subunit # Organism: Escherichia coli K12 # 1 252 1 252 252 519 99.0 1e-147 MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD AERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHD LYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLW PQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDAPTGNRVNTWLRDADDPRLNSIV QQLFRVLRGLHD >gi|223713596|gb|ACDM01000002.1| GENE 77 89868 - 90413 385 181 aa, chain - ## HITS:1 COG:hyfH KEGG:ns NR:ns ## COG: hyfH COG1143 # Protein_GI_number: 16130413 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli K12 # 1 181 1 181 181 306 100.0 1e-83 MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACACACPANALTIQTD DQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRC ERPFAPQKTIALAAELLAQQQNAPQNREMLWAQASVCPECKQRATLINDDTDVLLVAKEQ L >gi|223713596|gb|ACDM01000002.1| GENE 78 90423 - 92090 1818 555 aa, chain - ## HITS:1 COG:ECs3349_2 KEGG:ns NR:ns ## COG: ECs3349_2 COG3261 # Protein_GI_number: 15832603 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III large subunit # Organism: Escherichia coli O157:H7 # 156 555 1 416 416 823 95.0 0 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTIAVKINLLPDVVQYLYYQHDGWL PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK EIERYGIDRNRSPLK >gi|223713596|gb|ACDM01000002.1| GENE 79 92080 - 93660 1368 526 aa, chain - ## HITS:1 COG:hyfF KEGG:ns NR:ns ## COG: hyfF COG0651 # Protein_GI_number: 16130411 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1 526 1 526 526 873 99.0 0 MSYSVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGIILLLILALWVVQTAADA GEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFH LFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAFGL FGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPMHA WLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVAVA AFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGSGN VLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLARNHLL IIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMMLAMGTHIP QPVIRILAGASTIVLSGTHDLPAQRSTWHDFLPSGTASVSEKHSER >gi|223713596|gb|ACDM01000002.1| GENE 80 93665 - 94315 623 216 aa, chain - ## HITS:1 COG:ECs3347 KEGG:ns NR:ns ## COG: ECs3347 COG4237 # Protein_GI_number: 15832601 # Func_class: C Energy production and conversion # Function: Hydrogenase 4 membrane component (E) # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 339 100.0 2e-93 MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSIFATLSCLFAAEQLLIW SASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLAALIVLLCAFVVQPVKLPM ATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMENGSHLVLALLAWRAPELVEIG IATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG >gi|223713596|gb|ACDM01000002.1| GENE 81 94327 - 95766 1257 479 aa, chain - ## HITS:1 COG:hyfD KEGG:ns NR:ns ## COG: hyfD COG1009 # Protein_GI_number: 16130409 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Escherichia coli K12 # 1 479 1 479 479 830 100.0 0 MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLT LVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLL VFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSALKALLITHIGSLGLY LAAATLFLQTGTFALSAMSELHGDARYLVYGGILFAAWGKSAQLPMQAWLPDAMEAPTPI SAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALVTILYGFLMYLPQQDMKRLL AWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKSLFFLVAGALSYSCGTRLLP RLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGFALSVEYWILLPAMILLM IESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVLIVMSLISSVIAATWLQ >gi|223713596|gb|ACDM01000002.1| GENE 82 95783 - 96730 910 315 aa, chain - ## HITS:1 COG:hyfC KEGG:ns NR:ns ## COG: hyfC COG0650 # Protein_GI_number: 16130408 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 4 # Organism: Escherichia coli K12 # 1 315 8 322 322 508 100.0 1e-144 MRQTLCDGYLVIFALAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKR QEVAPTSSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFA LSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIAGSTHIEMISNTLAMGWNSPL TTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMAS LFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIHHVTWLG FSLAALAWVFWLTGL >gi|223713596|gb|ACDM01000002.1| GENE 83 96741 - 98759 1582 672 aa, chain - ## HITS:1 COG:hyfB KEGG:ns NR:ns ## COG: hyfB COG0651 # Protein_GI_number: 16130407 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1 672 1 672 672 1102 99.0 0 MDALQLLTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTL VARFATPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFFMNI FIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMI AFLLMGRESGSLDFASFRTLSLSPGLASAVFLLAFFGFGAKAGMMPLHSWLPRAHPAAPS HASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDI KRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAG AIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQSLFSLSRV EAVALQLAGPIAMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNTMIVAMLL LAALCVLIALSASWLAPKIMHIAHAFTNTPPATVASGIALVPGTFHTQVTPSLLLLLLLA MPLLPGLYWLWCRSRRAAFRRTGDAWACGYGWENAMAPSGNGVMQPLRVVFSALFRLRQQ LDPTLRLNKGLAHVTARAQSTEPFWDERVIRPIVSATQRLAKEIQHLQSGDFRLYCLYVV AALVVLLIAIAV >gi|223713596|gb|ACDM01000002.1| GENE 84 98759 - 99376 305 205 aa, chain - ## HITS:1 COG:hyfA KEGG:ns NR:ns ## COG: hyfA COG1142 # Protein_GI_number: 16130406 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1 205 14 218 218 387 100.0 1e-108 MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCL QVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLK DGEENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRLITGDSLQRQMK EKQRLAASWFANGGEDPLSLTQEQR >gi|223713596|gb|ACDM01000002.1| GENE 85 99629 - 100099 568 156 aa, chain - ## HITS:1 COG:ECs3342 KEGG:ns NR:ns ## COG: ECs3342 COG1225 # Protein_GI_number: 15832596 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 322 100.0 1e-88 MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDEL KKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIH RISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA >gi|223713596|gb|ACDM01000002.1| GENE 86 100099 - 100671 375 190 aa, chain - ## HITS:1 COG:ECs3341 KEGG:ns NR:ns ## COG: ECs3341 COG2716 # Protein_GI_number: 15832595 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system regulatory protein # Organism: Escherichia coli O157:H7 # 1 190 23 212 212 374 99.0 1e-104 MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNA ITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDVADSPHLIERFTALFDAHH MNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQAFKALCTELNAQGSINVVNY SQHDEQDGVK >gi|223713596|gb|ACDM01000002.1| GENE 87 100817 - 101695 774 292 aa, chain + ## HITS:1 COG:dapA KEGG:ns NR:ns ## COG: dapA COG0329 # Protein_GI_number: 16130403 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli K12 # 1 292 1 292 292 580 100.0 1e-165 MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVV MMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFK AIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDD FVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLH NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL >gi|223713596|gb|ACDM01000002.1| GENE 88 101712 - 102746 827 344 aa, chain + ## HITS:1 COG:nlpB KEGG:ns NR:ns ## COG: nlpB COG3317 # Protein_GI_number: 16130402 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1 344 2 345 345 624 100.0 1e-179 MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPV TSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQV VSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLN LEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLP MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLAS GDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSK >gi|223713596|gb|ACDM01000002.1| GENE 89 102657 - 102887 75 76 aa, chain - ## HITS:1 COG:no KEGG:SDY_2665 NR:ns ## KEGG: SDY_2665 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 76 8 83 83 133 100.0 2e-30 MRRERLIRTTSDKQISCELPLKSRFPADAHVCVSYQKKGPDDSSPVFLLAKRSLEDSYQR VVLTLSQSMTFRIDEL >gi|223713596|gb|ACDM01000002.1| GENE 90 102959 - 103672 1163 237 aa, chain + ## HITS:1 COG:ECs3338 KEGG:ns NR:ns ## COG: ECs3338 COG0152 # Protein_GI_number: 15832592 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Escherichia coli O157:H7 # 1 237 1 237 237 464 100.0 1e-131 MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSK LAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDL FLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEF GLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGVQLD >gi|223713596|gb|ACDM01000002.1| GENE 91 103909 - 104703 868 264 aa, chain + ## HITS:1 COG:ECs3337 KEGG:ns NR:ns ## COG: ECs3337 COG2321 # Protein_GI_number: 15832591 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Escherichia coli O157:H7 # 6 264 29 287 287 508 100.0 1e-144 MGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFT SVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDL SFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRME LQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQ RYSWFKRGFDSGDPAQCNTFGKSI >gi|223713596|gb|ACDM01000002.1| GENE 92 104757 - 106733 1341 658 aa, chain + ## HITS:1 COG:ypfI KEGG:ns NR:ns ## COG: ypfI COG1444 # Protein_GI_number: 16130399 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase fused to an acetyltransferase # Organism: Escherichia coli K12 # 1 658 14 671 671 1293 100.0 0 MKREGIRRLLVLSGEEGWCFEHTLKLRDALPGDWLWISPRPDAENHCSPSALQTLLGREF RHAVFDARHGFDAAAFAALSGTLKAGSWLVLLLPVWEEWENQPDADSLRWSDCPDPIATP HFVQHLKRVLTADNEAILWRQNQPFSLAHFTPRTDWYPATGAPQPEQQQLLKQLMTMPPG VAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASD EQADWLVVDEAAAIPAPLLHQLVSRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFE LQQPIRWAQGCPLEKMVSEALVFDDENFTHTPQGNIVISAFEQTLWQSDPETPLKVYQLL SGAHYRTSPLDLRRMMDAPGQHFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPR GNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTQDLDYLSVS FGYTGELWRFWQRCGFVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQ ALAQWNGETLPVDPLNDAVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALR GRLQKNASDAQLCTTLKLSGRKMLLVRQREEAAQALFALNDVRTERLRDRITQWQLFH >gi|223713596|gb|ACDM01000002.1| GENE 93 106807 - 107505 795 232 aa, chain + ## HITS:1 COG:ypfH KEGG:ns NR:ns ## COG: ypfH COG0400 # Protein_GI_number: 16130398 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1 232 9 240 240 459 100.0 1e-129 MKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGNWFAPLFPDALVVSVGGAEPSGNP AGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGANATALIGFSQGAIMVLES IKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDPVIDLAHAVAAQEALISAGGD VTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEALSGGKPGDDDVIEMM >gi|223713596|gb|ACDM01000002.1| GENE 94 107615 - 107815 351 66 aa, chain - ## HITS:1 COG:no KEGG:G2583_2995 NR:ns ## KEGG: G2583_2995 # Name: ypfN # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 66 1 66 66 85 100.0 7e-16 MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK KDQPKK >gi|223713596|gb|ACDM01000002.1| GENE 95 107843 - 108970 1173 375 aa, chain - ## HITS:1 COG:dapE KEGG:ns NR:ns ## COG: dapE COG0624 # Protein_GI_number: 16130397 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1 375 1 375 375 778 100.0 0 MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMDFADTQNFWAWRGQGET LAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPN HTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLVGEPSSIEVVGDVVKNGRRGS LTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIEWDQGNEFFPATSMQIANIQAGT GSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARGKL VDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQ LLARMYQRIMEQLVA >gi|223713596|gb|ACDM01000002.1| GENE 96 108974 - 109330 362 118 aa, chain - ## HITS:1 COG:yffB KEGG:ns NR:ns ## COG: yffB COG1393 # Protein_GI_number: 16130396 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1 118 1 118 118 246 100.0 6e-66 MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNDFINELGWEALLNTRGT TWRKLDETTRNKITDAASAAALMTEMPAIIKRPLLCVPGKPMLLGFSDSSYQQFFHEV >gi|223713596|gb|ACDM01000002.1| GENE 97 109569 - 109691 78 40 aa, chain - ## HITS:1 COG:no KEGG:ECP_2483 NR:ns ## KEGG: ECP_2483 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 40 36 75 75 62 95.0 3e-09 MGILRKQYTVVKLIYSIAAMTTSGGQILCKYYGPAVMICM >gi|223713596|gb|ACDM01000002.1| GENE 98 109869 - 112982 3301 1037 aa, chain - ## HITS:1 COG:acrD KEGG:ns NR:ns ## COG: acrD COG0841 # Protein_GI_number: 16130395 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1037 1 1037 1037 2040 99.0 0 MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL SVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRW IVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTH EKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEA RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAASNQLLALAAENPELTRVRHNGLD DSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRML PDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD IMESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVM LVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEA TLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVP LFFVLVRRRFPLKPRPE >gi|223713596|gb|ACDM01000002.1| GENE 99 113146 - 114846 1259 566 aa, chain - ## HITS:1 COG:narQ KEGG:ns NR:ns ## COG: narQ COG3850 # Protein_GI_number: 16130394 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Escherichia coli K12 # 1 566 1 566 566 1080 100.0 0 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT FSQPSGGGTLVSISFRSAEGEESQLM >gi|223713596|gb|ACDM01000002.1| GENE 100 115052 - 117031 1526 659 aa, chain + ## HITS:1 COG:aegA_2 KEGG:ns NR:ns ## COG: aegA_2 COG0493 # Protein_GI_number: 16130393 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 181 659 1 479 479 1000 100.0 0 MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSAVTCHHCE DAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHK CDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLRTARQEHQPWHASTAAQEMPV MSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCGEHSVCEWTC PLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTI GNIERYISDQALAKGWRPDLSHVTKVDKRVAIIGAGPAGLACADVLTRNGVGVTVYDRHP EIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGV GTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTA MDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHV CGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKW GRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH >gi|223713596|gb|ACDM01000002.1| GENE 101 117099 - 117674 644 191 aa, chain + ## HITS:1 COG:yffH KEGG:ns NR:ns ## COG: yffH COG0494 # Protein_GI_number: 16130392 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 191 1 191 191 373 100.0 1e-103 MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTV VLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYM SPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL LNYLQTSHLMD >gi|223713596|gb|ACDM01000002.1| GENE 102 117923 - 118843 665 306 aa, chain + ## HITS:1 COG:no KEGG:B21_02319 NR:ns ## KEGG: B21_02319 # Name: ypfG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 306 42 347 347 602 99.0 1e-171 MARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGD KWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGS ETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPL RREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNEL ELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWP TLWITR >gi|223713596|gb|ACDM01000002.1| GENE 103 118938 - 120941 2324 667 aa, chain - ## HITS:1 COG:tktB KEGG:ns NR:ns ## COG: tktB COG0021 # Protein_GI_number: 16130390 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Escherichia coli K12 # 1 667 1 667 667 1360 100.0 0 MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFI LSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLA NAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGF YDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGE KAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKAS QNTLNAYGPMLPELLGGSADLAPSNLTIWKGSVSLKEDPAGNYIHYGVREFGMTAIANGI AHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGY VLKDSGGKPDIILIATGSEMEITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVL PSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHK VLGVKGA >gi|223713596|gb|ACDM01000002.1| GENE 104 120961 - 121911 1007 316 aa, chain - ## HITS:1 COG:ECs3326 KEGG:ns NR:ns ## COG: ECs3326 COG0176 # Protein_GI_number: 15832580 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli O157:H7 # 1 316 1 316 316 635 100.0 0 MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLSQYEHLIDDAIAWGKK NGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSFDKEKSIEKARHLVDLYQQ QGVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGR IYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYETIVMGASFRRTEQILALTGCDR LTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRL FAVDQRKLEDLLAAKL >gi|223713596|gb|ACDM01000002.1| GENE 105 122200 - 124479 2653 759 aa, chain + ## HITS:1 COG:maeB_1 KEGG:ns NR:ns ## COG: maeB_1 COG0281 # Protein_GI_number: 16130388 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1 434 1 434 434 849 100.0 0 MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIEKDPLKAYKY TARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEVDELDPDKFI EVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRV VEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVVCDSKGVIYQGREPNMAETKAAY AVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKKMARAPMILALANPEPEILPPLAKE VRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVRAIAELAHAEQS EVVASAYGDQDLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMESGVATRPIADFDVYIDKL TEFVYKTNLFMKPIFSQARKAPKRVVLPEGEEARVLHATQELVTLGLAKPILIGRPNVIE MRIQKLGLQIKAGVDFEIVNNESDPRFKEYWTEYFQIMKRRGVTQEQAQRALISNPTVIG AIMVQRGEADAMICGTVGDYHEHFSVVKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYV NDEPDAEELAEITLMAAETVRRFGIEPRVALLSHSNFGSSDCPSSSKMRQALELVRERAP ELMIDGEMHGDAALVEAIRNDRMPDSSLKGSANILVMPNMEAARISYNLLRVSSSEGVTV GPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTQPL >gi|223713596|gb|ACDM01000002.1| GENE 106 124771 - 125106 393 111 aa, chain + ## HITS:1 COG:ECs3324 KEGG:ns NR:ns ## COG: ECs3324 COG4810 # Protein_GI_number: 15832578 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli O157:H7 # 1 111 25 135 135 213 100.0 1e-55 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS >gi|223713596|gb|ACDM01000002.1| GENE 107 125119 - 125598 377 159 aa, chain + ## HITS:1 COG:eutP KEGG:ns NR:ns ## COG: eutP COG4917 # Protein_GI_number: 16130386 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1 159 1 159 159 316 99.0 1e-86 MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYFNHPRWYHALIT TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGF EEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE >gi|223713596|gb|ACDM01000002.1| GENE 108 125573 - 126274 748 233 aa, chain + ## HITS:1 COG:eutQ KEGG:ns NR:ns ## COG: eutQ COG4766 # Protein_GI_number: 16130385 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1 233 1 233 233 456 100.0 1e-128 MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFTITECDESIPVTASVPA SVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQSLEQGAMQPSFKSVTGKG GIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAGFMQWENAFFPWTLNYDEIDM VLEGELHVRHEGQTMIAKAGDVMFIPKGSSIEFGTTSSVKFLYVAWPANWQSL >gi|223713596|gb|ACDM01000002.1| GENE 109 126271 - 127074 868 267 aa, chain + ## HITS:1 COG:eutT KEGG:ns NR:ns ## COG: eutT COG4812 # Protein_GI_number: 16130384 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization cobalamin adenosyltransferase # Organism: Escherichia coli K12 # 1 267 1 267 267 508 100.0 1e-144 MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLRIKFIDEQGRLFVDDEQ QQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKMVAKSDPRLGFRAVLDSTI ALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGCQAIVGLSDEDLHRLSHQPLR YLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSFEVLRPDILQALNRLSST VYVMMILSVTKQPLTVKQIQQRLGETQ >gi|223713596|gb|ACDM01000002.1| GENE 110 127071 - 128087 842 338 aa, chain + ## HITS:1 COG:eutI KEGG:ns NR:ns ## COG: eutI COG0280 # Protein_GI_number: 16130383 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Escherichia coli K12 # 1 338 1 338 338 624 100.0 1e-179 MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALSHGV AMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCI AGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPALGFADCSVVPQPTAAQLAD IALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQF DAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPM HDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQTLVE >gi|223713596|gb|ACDM01000002.1| GENE 111 128126 - 128419 481 97 aa, chain + ## HITS:1 COG:ECs3319 KEGG:ns NR:ns ## COG: ECs3319 COG4577 # Protein_GI_number: 15832573 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli O157:H7 # 1 97 15 111 111 153 100.0 9e-38 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGA AAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL >gi|223713596|gb|ACDM01000002.1| GENE 112 128526 - 128813 239 95 aa, chain + ## HITS:1 COG:cchB KEGG:ns NR:ns ## COG: cchB COG4576 # Protein_GI_number: 16130381 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli K12 # 1 95 1 95 95 176 100.0 9e-45 MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVSG SSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK >gi|223713596|gb|ACDM01000002.1| GENE 113 128825 - 130228 837 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 1 454 1 461 477 327 40 3e-88 MNQQDIEQVVKAVLLKMQSSDTPSAAVHEMGVFASLDDAVAAAKVAQQGLKSVAMRQLAI AAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTPGVECLSPQVLTGDNGLTL IENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAPHPAAKKVSQRAITLLNQAIV AAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGEAVVEAARKHTNKRLIAAGAGNP PVVVDETADLARAAQSIVKGASFDNNIICADEKVLIVVDSVADELMRLMEGQHAVKLTAE QAQQLQPVLLKNIDERGKGTVSRDWVGRDAGKIAAAIGLKVPQETRLLFVETTAEHPFAV TELMMPVLPVVRVANVADAIALAVKLEGGCHHTAAMHSRNIENMNQMANAIDTSIFVKNG PCIAGLGLGGEGWTTMTITTPTGEGVTSARTFVRLRRCVLVDAFRIV >gi|223713596|gb|ACDM01000002.1| GENE 114 130239 - 131075 934 278 aa, chain + ## HITS:1 COG:eutJ KEGG:ns NR:ns ## COG: eutJ COG4820 # Protein_GI_number: 16130379 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin # Organism: Escherichia coli K12 # 1 278 1 278 278 564 100.0 1e-161 MAHDEQWLTPRLQTAATLCNQTPAATESPLWLGVDLGTCDVVSMVVDRDGQPVAVCLDWA DVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRFSHAATSFPPGTDPRISINVLESAGLEV SHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKKGKVTYSADEATGGHHISLTLAGNR RISLEEAEQYKRGHGEEIWPAVKPVYEKMADIVARHIEGQGITDLWLAGGSCMQPGVAEL FRKQFPALQVHLPQHSLFMTPLAIASSGREKAEGLYAK >gi|223713596|gb|ACDM01000002.1| GENE 115 131065 - 132252 1201 395 aa, chain + ## HITS:1 COG:eutG KEGG:ns NR:ns ## COG: eutG COG1454 # Protein_GI_number: 16130378 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli K12 # 1 395 10 404 404 727 100.0 0 MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQAQTRGLKHLFVMADSFL HQAGMTAGLTRSLTVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLD AAKAVTLLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQV LAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSALNATPFTDSLAIGAIAM IGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGLANA MLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRDAINAVSELIAEVGIGKRLGDVGATSA HYGAWAQAALEDICLRSNPRTASLEQIVGLYAAAQ >gi|223713596|gb|ACDM01000002.1| GENE 116 132469 - 133695 1637 408 aa, chain + ## HITS:1 COG:eutH KEGG:ns NR:ns ## COG: eutH COG3192 # Protein_GI_number: 16130377 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1 408 1 408 408 663 100.0 0 MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGSGGQFEEGFMAMGALGL AMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACDMGGFFLAKELAGGDVAAW LYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLAGIVTIPIGCIAGGLVAMYSG VQINGQPVEFTFALILMNMIPVIIVAILVALGLKFIPEKMINGFQIFAKFLVALITLGLA AAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEVIGSISCVLLGAYPMVLLLTRWFEK PLMSVGKVLNMNNIAAAGMVATLANNIPMFGMMKQMDTRGKVINCAFAVSAAFALGDHLG FAAANMNAMIFPMIVGKLIGGVTAIGVAMMLVPKEDATATKTEAEAQS >gi|223713596|gb|ACDM01000002.1| GENE 117 133692 - 135095 1454 467 aa, chain + ## HITS:1 COG:eutA KEGG:ns NR:ns ## COG: eutA COG4819 # Protein_GI_number: 16130376 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Escherichia coli K12 # 1 467 1 467 467 895 99.0 0 MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKREISWQSPVFFTPVDKQ GGLKEAELKTLILEQYHAAGIEPESVDSGAIIITGESAKTRNARPAVMALSQSLGDFVVA SAGPHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANYALFDAGKISGTACLNVGGRL LETDSHGRVVYAHKPGQMIVDECFGAGTDARSLTGAQLVQVTRRMAELIVEVIDGTLSPL AQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADPFCFADIGPLLATALHDHPRLREMN VQFPAQTVRATVIGAGAHALSLSGSTIWLEGVQLPLRNLPVAIPIDETDLVGAWQQALIQ LDLDPKTDAYVLALPASLPVRYAAVLTVINALVDFVARFPNPHPLLVVAGQDFGKALGML LRPQLQQLPLAVIDEVIVRAGDYIDIGTPLFGGSVVPVTVKSLAFPS >gi|223713596|gb|ACDM01000002.1| GENE 118 135107 - 136468 1625 453 aa, chain + ## HITS:1 COG:eutB KEGG:ns NR:ns ## COG: eutB COG4303 # Protein_GI_number: 16130366 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Escherichia coli K12 # 1 453 15 467 467 924 100.0 0 MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQERVAAKQVLSEMTVADIR NNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSE VVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEG LSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAP GGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANF GADQVTMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMG CDCCYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLN LRPSPEFERWLESMGIMANGRLTKRAGDPSLFF >gi|223713596|gb|ACDM01000002.1| GENE 119 136489 - 137376 1022 295 aa, chain + ## HITS:1 COG:eutC KEGG:ns NR:ns ## COG: eutC COG4302 # Protein_GI_number: 16130365 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Escherichia coli K12 # 1 295 1 295 295 555 100.0 1e-158 MDQKQIEEIVRSVMASMGQAAPAPSEAKCATTNCAAPVTSESCALDLGSAEAKAWIGVEN PHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGL LEVRSEISDKNLYLTRPDMGRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEE ILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSC YAVYSPRMATTVEADRTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR >gi|223713596|gb|ACDM01000002.1| GENE 120 137386 - 138045 715 219 aa, chain + ## HITS:1 COG:eutL KEGG:ns NR:ns ## COG: eutL COG4816 # Protein_GI_number: 16130364 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli K12 # 1 219 1 219 219 375 100.0 1e-104 MPALDLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAM VEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQ DTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATYGIDAALKSADVQLATYVPPP SETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQRA >gi|223713596|gb|ACDM01000002.1| GENE 121 138058 - 138558 431 166 aa, chain + ## HITS:1 COG:eutK KEGG:ns NR:ns ## COG: eutK COG4577 # Protein_GI_number: 16130363 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli K12 # 1 166 3 168 168 288 100.0 3e-78 MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAG CAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPDAPVIVAESADELLALLTS VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKPH >gi|223713596|gb|ACDM01000002.1| GENE 122 138604 - 139656 999 350 aa, chain + ## HITS:1 COG:eutR KEGG:ns NR:ns ## COG: eutR COG2207 # Protein_GI_number: 16130362 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 350 1 350 350 713 100.0 0 MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAWQQIYDQLHPG KFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGSQCLGSAEI ATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPDRVLHMLRNQSALEVKEQHKA ALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMGAMLEEAQPMVTAESISHQSYRR LLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE LISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREWG >gi|223713596|gb|ACDM01000002.1| GENE 123 139662 - 140561 685 299 aa, chain - ## HITS:1 COG:hemF KEGG:ns NR:ns ## COG: hemF COG0408 # Protein_GI_number: 16130361 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase # Organism: Escherichia coli K12 # 1 299 1 299 299 625 100.0 1e-179 MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGGRSRVLRNGGVFEQAGV NFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYVPTSHANVRFFIAEKPGAD PVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDEYFYLKHRNEQR GIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRGRY VEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYQPKDGSPEAALSEFIKVRDWV >gi|223713596|gb|ACDM01000002.1| GENE 124 140565 - 141434 806 289 aa, chain - ## HITS:1 COG:amiA KEGG:ns NR:ns ## COG: amiA COG0860 # Protein_GI_number: 16130360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli K12 # 1 289 1 289 289 531 100.0 1e-151 MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVV LDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEI AHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATD KDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVL VETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR >gi|223713596|gb|ACDM01000002.1| GENE 125 141648 - 142073 579 141 aa, chain + ## HITS:1 COG:ypeA KEGG:ns NR:ns ## COG: ypeA COG0456 # Protein_GI_number: 16130359 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Escherichia coli K12 # 1 141 38 178 178 294 100.0 3e-80 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGDVVGTVMG GYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYER LGYEHADVLSLGKRLIEDEEY >gi|223713596|gb|ACDM01000002.1| GENE 126 142060 - 142509 302 149 aa, chain + ## HITS:1 COG:no KEGG:G2583_2964 NR:ns ## KEGG: G2583_2964 # Name: yfeZ # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 149 3 151 151 239 100.0 3e-62 MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASREQGTALLNLFYPDHDN FWLGLIPGIPAVLAFLLSGRRATFPRTWRVLYFLLLLAQVVLLCWQPWLWLNGESVSGIG LALVVADIVALIWLLTNRRLRACFNEVKE >gi|223713596|gb|ACDM01000002.1| GENE 127 142570 - 143145 466 191 aa, chain + ## HITS:1 COG:no KEGG:SSON_2521 NR:ns ## KEGG: SSON_2521 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 191 1 191 191 381 100.0 1e-105 MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQGVGELTASTPLQEQAI ADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGV KIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLK NWKVSKIIWRR >gi|223713596|gb|ACDM01000002.1| GENE 128 143241 - 144140 1074 299 aa, chain + ## HITS:1 COG:yfeX KEGG:ns NR:ns ## COG: yfeX COG2837 # Protein_GI_number: 16130356 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Escherichia coli K12 # 1 299 10 308 308 615 99.0 1e-176 MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATFEAKFPDAHLGAVVAFG NNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLRHDVNFSVAQAAMEAFGDC IEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVIKDGVDAGGSYVFVQRWEHNL KQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTRVDLKEDGKGLKIVRQSLPYGTA SGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAMLRFTKPVTGGYYFAPSLDKLMAL >gi|223713596|gb|ACDM01000002.1| GENE 129 144380 - 145684 1295 434 aa, chain - ## HITS:1 COG:yfeW KEGG:ns NR:ns ## COG: yfeW COG1680 # Protein_GI_number: 16130355 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 1 434 30 463 463 879 100.0 0 MKRTMLYLSLLAVSCSVSAAKYPVLTESSPEKAGFNVERLNQMDRWISQQVDVGYPSVNL LIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEG KLHPDDRIAKYIPGFADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQD KGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRYVEESIYRPLGLTHT VFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGGVSGHAGL FSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTF GTLASPQTYGHTGWTGTVTVIDPVNHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATY GWVVDQVYAALKQK >gi|223713596|gb|ACDM01000002.1| GENE 130 145689 - 147113 1601 474 aa, chain - ## HITS:1 COG:yfeV_2 KEGG:ns NR:ns ## COG: yfeV_2 COG1263 # Protein_GI_number: 16130354 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 101 474 1 374 374 655 100.0 0 MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTS DQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATI FTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYN AAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACA RIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGC AVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPH SALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGL NSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD >gi|223713596|gb|ACDM01000002.1| GENE 131 147117 - 148013 828 298 aa, chain - ## HITS:1 COG:yfeU KEGG:ns NR:ns ## COG: yfeU COG2103 # Protein_GI_number: 16130353 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Escherichia coli K12 # 1 298 1 298 298 547 100.0 1e-156 MQFEKMITEGSNTASAEIDRVSTLEMCRIINDEDKTVPLAVERVLPDIAAAIDVIHAQVS GGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGGEYAIQHAVEGAEDSREGG VNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCRTVGISCNPGSAVSTTAEFAI TPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGKVFGNLMVDVVATNEKLHVRQVN IVKNATGCSAEQAEAALIACERNCKTAIVMVLKNLDAAEAKKRLDQHGGFIRQVLDKE >gi|223713596|gb|ACDM01000002.1| GENE 132 148177 - 149034 797 285 aa, chain + ## HITS:1 COG:yfeT KEGG:ns NR:ns ## COG: yfeT COG1737 # Protein_GI_number: 16130352 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 285 1 285 285 478 100.0 1e-135 MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGA QGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALL DYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLTDSPLRRLAHFTLDTVSGETEW RSSSMSTRTAQNSVTDLLFVGLVQLNDVESLKMIQRSSELTQRLK >gi|223713596|gb|ACDM01000002.1| GENE 133 149163 - 149954 248 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 251 4 238 242 100 30 6e-20 MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVV ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNV TKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRV NAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESS YLTGTQNVIDGGSTLPETVSVGI >gi|223713596|gb|ACDM01000002.1| GENE 134 150258 - 151274 1398 338 aa, chain + ## HITS:1 COG:cysP KEGG:ns NR:ns ## COG: cysP COG4150 # Protein_GI_number: 16130350 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 338 1 338 338 652 100.0 0 MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKL TIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPADWQSRLPNNSSPFYS TMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKGKT EQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKT NILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITDYYYRVNNPEVMDKLKDKF PQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLAAGRN >gi|223713596|gb|ACDM01000002.1| GENE 135 151274 - 152107 1007 277 aa, chain + ## HITS:1 COG:cysU KEGG:ns NR:ns ## COG: cysU COG0555 # Protein_GI_number: 16130349 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type sulfate transport system, permease component # Organism: Escherichia coli K12 # 1 277 1 277 277 439 100.0 1e-123 MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAY KVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS VNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT RWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH >gi|223713596|gb|ACDM01000002.1| GENE 136 152107 - 152982 1142 291 aa, chain + ## HITS:1 COG:cysWm KEGG:ns NR:ns ## COG: cysWm COG4208 # Protein_GI_number: 16132224 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Escherichia coli K12 # 1 291 1 291 291 538 100.0 1e-153 MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADP DMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV YLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH >gi|223713596|gb|ACDM01000002.1| GENE 137 152972 - 154069 1386 365 aa, chain + ## HITS:1 COG:cysA KEGG:ns NR:ns ## COG: cysA COG1118 # Protein_GI_number: 16130348 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Escherichia coli K12 # 1 365 1 365 365 722 100.0 0 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR FHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKL LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR QLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQVWREPATRFVLEFMGEV NRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLRPWEVDISRRTSLDSPLPVQVLEAS PKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGERLFVGLQHARLYNGDERIETRDEELA LAQSA >gi|223713596|gb|ACDM01000002.1| GENE 138 154125 - 155114 552 329 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 24 318 1 304 308 217 39 3e-55 MARFVTCRPDKTRKRRIRQHHVWIEIVSTLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGN NPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDN MSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTT GPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAV VVAIICDRGDRYLSTGVFGEEHFSQGAGI >gi|223713596|gb|ACDM01000002.1| GENE 139 155303 - 156037 541 244 aa, chain - ## HITS:1 COG:yfeS_2 KEGG:ns NR:ns ## COG: yfeS_2 COG4884 # Protein_GI_number: 16130346 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 73 244 1 172 172 355 100.0 3e-98 MKKRFIYHDEKSNKFWWIDYEGDSLAVNYGKVGSIGKFQTKEFDNEEQCLKEASKLIAAK MKKGYQEDPKFNFMDRYYFDDEEIGLHVKTSHPNFQCHFTDPLYMCCWDEESPFGSDEGA DALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSN MITYATAFGQIKVMGKISHKLKKMGLNALARHQLTAKILQWGDGQDSPILQKMIDDLTAF PHEN >gi|223713596|gb|ACDM01000002.1| GENE 140 156070 - 156444 377 124 aa, chain - ## HITS:1 COG:no KEGG:JW2412 NR:ns ## KEGG: JW2412 # Name: yfeK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 124 1 124 124 244 100.0 9e-64 MKKIICLVITLLMTLPVYAKLTAHEEARINAMLEGLAQKKDLIFVRNGDEHTCYEAVSHL RLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDENAQPFLHALIAQTDKTVP AEGN >gi|223713596|gb|ACDM01000002.1| GENE 141 156549 - 157400 853 283 aa, chain + ## HITS:1 COG:pdxK KEGG:ns NR:ns ## COG: pdxK COG2240 # Protein_GI_number: 16130344 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Escherichia coli K12 # 1 283 1 283 283 556 100.0 1e-158 MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHY DTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDL LIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAA AKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISHSRVKTDLKGTGDLFCAQLI SGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPPLAEA >gi|223713596|gb|ACDM01000002.1| GENE 142 157443 - 157952 655 169 aa, chain - ## HITS:1 COG:crr KEGG:ns NR:ns ## COG: crr COG2190 # Protein_GI_number: 16130343 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Escherichia coli K12 # 1 169 1 169 169 285 100.0 4e-77 MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKM VAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTV IEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK >gi|223713596|gb|ACDM01000002.1| GENE 143 157993 - 159720 1757 575 aa, chain - ## HITS:1 COG:ptsI KEGG:ns NR:ns ## COG: ptsI COG1080 # Protein_GI_number: 16130342 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 1 575 1 575 575 1044 100.0 0 MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTK AGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDD EYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFI TDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMR AVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFL FMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAI RIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAF DESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPS VLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNT NFEDAKVLAEQALAQPTTDELMTLVNKFIEEKTIC >gi|223713596|gb|ACDM01000002.1| GENE 144 159765 - 160022 377 85 aa, chain - ## HITS:1 COG:ECs3287 KEGG:ns NR:ns ## COG: ECs3287 COG1925 # Protein_GI_number: 15832541 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Escherichia coli O157:H7 # 1 85 1 85 85 129 100.0 2e-30 MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTV VTISAEGEDEQKAVEHLVKLMAELE >gi|223713596|gb|ACDM01000002.1| GENE 145 160406 - 161377 702 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4 312 3 304 308 275 49 1e-72 MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK PGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM KGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGG TLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLD LKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILP SSGERYLSTALFADLFTEKELQQ >gi|223713596|gb|ACDM01000002.1| GENE 146 161562 - 162197 609 211 aa, chain - ## HITS:1 COG:ECs3285 KEGG:ns NR:ns ## COG: ECs3285 COG2981 # Protein_GI_number: 15832539 # Func_class: E Amino acid transport and metabolism # Function: Uncharacterized protein involved in cysteine biosynthesis # Organism: Escherichia coli O157:H7 # 1 211 43 253 253 383 100.0 1e-106 MGGAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIPGI GQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSLFTMI PLLNLFIMPVAVCGATAMWVDCYRDKHAMWR >gi|223713596|gb|ACDM01000002.1| GENE 147 162556 - 163539 724 327 aa, chain + ## HITS:1 COG:zipA KEGG:ns NR:ns ## COG: zipA COG3115 # Protein_GI_number: 16130338 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli K12 # 1 327 2 328 328 476 100.0 1e-134 MQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSKRDDDSYDEDVEDDE GVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPHP AQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP APVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPA LFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVL DDQRRMMTPQKLREYQDIIREVKDANA >gi|223713596|gb|ACDM01000002.1| GENE 148 163610 - 165625 2065 671 aa, chain + ## HITS:1 COG:lig KEGG:ns NR:ns ## COG: lig COG0272 # Protein_GI_number: 16130337 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1 671 1 671 671 1317 100.0 0 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAG KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI DEAEMLRLLGS >gi|223713596|gb|ACDM01000002.1| GENE 149 165627 - 165845 278 72 aa, chain + ## HITS:1 COG:Z3676 KEGG:ns NR:ns ## COG: Z3676 COG3530 # Protein_GI_number: 15802943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 72 1 72 72 123 100.0 9e-29 MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAGKLGELMQITLLIKTEG LTQLVQPLKRPL >gi|223713596|gb|ACDM01000002.1| GENE 150 165842 - 166840 768 332 aa, chain - ## HITS:1 COG:yfeH KEGG:ns NR:ns ## COG: yfeH COG0385 # Protein_GI_number: 16130336 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Escherichia coli K12 # 1 332 1 332 332 592 100.0 1e-169 MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIA GGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTS MAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHL SRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLL AIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFH QIQLMVCAVLARRYKRQTEQLQAQQESSADKA >gi|223713596|gb|ACDM01000002.1| GENE 151 166930 - 167856 579 308 aa, chain + ## HITS:1 COG:yfeR KEGG:ns NR:ns ## COG: yfeR COG0583 # Protein_GI_number: 16130335 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 308 1 308 308 575 100.0 1e-164 MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLT DAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYP DIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVE DYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGR EGDPLYQI >gi|223713596|gb|ACDM01000002.1| GENE 152 167895 - 168659 806 254 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2597 NR:ns ## KEGG: ECS88_2597 # Name: yfeN # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 254 1 254 254 442 96.0 1e-123 MKKHLLTLTLSSILAIPVVSHAEFKGGFADIGVHYLDWTSRTTEKSSTKSHKDDFGYLEF EGGANFSWGEMYGFFDWENFYNGRHNKPGSEQRYTFKNTNRIYLGDTGFNLYLHAYGTYG SANRVNFHDDMFLYGIGYNFTGSGWWFKPFFAKRYTDQTYYTGDNGYVAGWVAGYNFMLG SEKFTLTNWNEYEFDRDATYAAGNGGKEGLNGAVALWWNATSHITTGIQYRYADDKLGED FYQDAIIYSIKFNF >gi|223713596|gb|ACDM01000002.1| GENE 153 168908 - 169741 937 277 aa, chain + ## HITS:1 COG:xapA KEGG:ns NR:ns ## COG: xapA COG0005 # Protein_GI_number: 16130333 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Escherichia coli K12 # 1 277 1 277 277 563 100.0 1e-160 MSQVQFSHNPLFCIDIIKTYKPDFTPRVAFILGSGLGALADQIENAVAISYEKLPGFPVS TVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGS LRPEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEG FPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNM AEGLSDVKLSHAQTLAAAELSKQNFINLICGFLRKIA >gi|223713596|gb|ACDM01000002.1| GENE 154 169801 - 171057 925 418 aa, chain + ## HITS:1 COG:xapB KEGG:ns NR:ns ## COG: xapB COG0477 # Protein_GI_number: 16130332 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 418 1 418 418 706 100.0 0 MSIAMRLKVMSFLQYFIWGSWLVTLGSYMINTLHFTGANVGMVYSSKGIAAIIMPGIMGI IADKWLRAERAYMLCHLVCAGVLFYAASVTDPDMMFWVMLVNAMAFMPTIALSNSVSYSC LAQAGLDPVTAFPPIRVFGTVGFIVAMWAVSLLHLELSSLQLYIASGASLLLSAYALTLP KIPVAEKKATTSLASKLGLDAFVLFKNPRMAIFFLFAMMLGAVLQITNVFGNPFLHDFAR NPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLKRFGIKTVMLMSMVAWTLRFGFFAY GDPSTTGFILLLLSMIVYGCAFDFFNISGSVFVEQEVDSSIRASAQGLFMTMVNGVGAWV GSILSGMAVDYFSVDGVKDWQTIWLVFAGYALFLAVIFFFGFKYNHDPEKIKHRAVTH >gi|223713596|gb|ACDM01000002.1| GENE 155 171110 - 171268 129 52 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_2559 NR:ns ## KEGG: EcSMS35_2559 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 52 1 52 52 69 100.0 3e-11 MKDILFSSGVGFGIGALFTIVRLPIPVPNVLPGILSIVFMYVGYLVVKYFMP >gi|223713596|gb|ACDM01000002.1| GENE 156 171309 - 172193 496 294 aa, chain + ## HITS:1 COG:xapR KEGG:ns NR:ns ## COG: xapR COG0583 # Protein_GI_number: 16130331 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 294 1 294 294 564 100.0 1e-161 MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKELENQLGTQLFIRHSRS VVLTHAGKILMEESRRLLVNANNVLARIEQIGRGEAGRIELGVVGTAMWGRMRPVMRRFL RENPNVDVLFREKMPAMQMALLERRELDAGIWRMATEPPTGFTSLRLHESAFLVAMPEEH HLSSFSTVPLEALRDEYFVTMPPVYTDWDFLQRVCQQVGFSPVVIREVNEPQTVLAMVSM GIGITLIADSYAQMNWPGVIFRPLKQRIPADLYIVYETQQVTPAMVKLLAALTQ Prediction of potential genes in microbial genomes Time: Mon May 16 18:30:53 2011 Seq name: gi|223713595|gb|ACDM01000003.1| Escherichia sp. 4_1_40B cont1.3, whole genome shotgun sequence Length of sequence - 222620 bp Number of predicted genes - 197, with homology - 197 Number of transcription units - 100, operones - 44 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 5 - 80 94.3 # Val TAC 0 0 - TRNA 127 - 202 94.3 # Val TAC 0 0 - TRNA 247 - 322 94.3 # Val TAC 0 0 + Prom 463 - 522 5.6 1 1 Tu 1 . + CDS 581 - 1996 1634 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 2011 - 2056 6.3 - Term 2005 - 2039 3.5 2 2 Op 1 . - CDS 2048 - 2440 263 ## JW2394 predicted DNA-binding transcriptional regulator 3 2 Op 2 . - CDS 2442 - 2801 347 ## SDY_2596 hypothetical protein - Prom 2833 - 2892 5.6 + TRNA 3022 - 3097 86.5 # Ala GGC 0 0 + TRNA 3137 - 3212 86.5 # Ala GGC 0 0 + Prom 3327 - 3386 3.2 4 3 Tu 1 . + CDS 3421 - 5610 1718 ## COG2200 FOG: EAL domain + Term 5617 - 5662 8.5 - Term 5602 - 5652 11.1 5 4 Tu 1 . - CDS 5660 - 6862 1655 ## COG1972 Nucleoside permease - Prom 6936 - 6995 5.0 6 5 Tu 1 . + CDS 7198 - 8436 1501 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 8521 - 8564 3.9 7 6 Tu 1 . - CDS 8577 - 8903 292 ## ECDH10B_2555 hypothetical protein - Prom 8943 - 9002 2.6 - Term 8942 - 8975 1.3 8 7 Tu 1 . - CDS 9018 - 10274 981 ## COG0038 Chloride channel protein EriC - Prom 10449 - 10508 5.0 + Prom 10384 - 10443 2.5 9 8 Tu 1 3/0.625 + CDS 10478 - 11443 1150 ## COG0837 Glucokinase + Term 11457 - 11492 5.1 + Prom 11573 - 11632 3.0 10 9 Op 1 7/0.062 + CDS 11662 - 11988 583 ## COG1445 Phosphotransferase system fructose-specific component IIB 11 9 Op 2 3/0.625 + CDS 12010 - 13257 1514 ## COG1299 Phosphotransferase system, fructose-specific IIC component 12 9 Op 3 3/0.625 + CDS 13272 - 14357 1179 ## COG0006 Xaa-Pro aminopeptidase 13 9 Op 4 3/0.625 + CDS 14357 - 15394 907 ## COG1363 Cellulase M and related proteins 14 9 Op 5 . + CDS 15419 - 17914 2723 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 15 10 Op 1 3/0.625 - CDS 17917 - 18774 635 ## COG2207 AraC-type DNA-binding domain-containing proteins 16 10 Op 2 9/0.031 - CDS 18787 - 19521 770 ## COG3279 Response regulator of the LytR/AlgR family 17 10 Op 3 . - CDS 19536 - 21215 1534 ## COG3275 Putative regulator of cell autolysis - Prom 21312 - 21371 4.7 + Prom 21368 - 21427 3.9 18 11 Tu 1 . + CDS 21609 - 22847 1279 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 22870 - 22901 4.1 - Term 23265 - 23305 4.1 19 12 Tu 1 . - CDS 23339 - 24259 838 ## COG1560 Lauroyl/myristoyl acyltransferase - Prom 24496 - 24555 2.3 + Prom 24511 - 24570 4.3 20 13 Tu 1 . + CDS 24612 - 24854 282 ## JW2374 predicted inner membrane protein + Prom 25352 - 25411 7.2 21 14 Tu 1 . + CDS 25502 - 26137 601 ## JW2372 hypothetical protein + Term 26192 - 26240 10.3 + Prom 26565 - 26624 8.4 22 15 Op 1 4/0.406 + CDS 26650 - 27900 1104 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase + Term 27908 - 27936 0.5 23 15 Op 2 3/0.625 + CDS 27954 - 29648 1081 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 24 15 Op 3 2/0.812 + CDS 29718 - 30662 668 ## COG0679 Predicted permeases + Term 30691 - 30727 2.2 25 15 Op 4 . + CDS 30736 - 31881 533 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase + Term 31904 - 31944 4.8 - Term 31892 - 31930 4.4 26 16 Tu 1 . - CDS 31937 - 34876 1146 ## COG0642 Signal transduction histidine kinase - Prom 34946 - 35005 3.4 - Term 35284 - 35325 3.0 27 17 Tu 1 . - CDS 35535 - 36149 350 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Prom 36263 - 36322 6.9 28 18 Op 1 19/0.000 + CDS 36565 - 37728 637 ## COG1566 Multidrug resistance efflux pump 29 18 Op 2 . + CDS 37728 - 39266 414 ## COG0477 Permeases of the major facilitator superfamily 30 19 Op 1 4/0.406 - CDS 39374 - 40702 1106 ## COG3048 D-serine dehydratase 31 19 Op 2 . - CDS 40720 - 42057 1326 ## COG2610 H+/gluconate symporter and related permeases - Prom 42223 - 42282 5.0 + Prom 42179 - 42238 6.6 32 20 Tu 1 . + CDS 42275 - 43210 351 ## COG0583 Transcriptional regulator - Term 43199 - 43245 2.5 33 21 Tu 1 . - CDS 43394 - 43594 178 ## JW5387 response regulator inhibitor for tor operon - Prom 43644 - 43703 2.3 - Term 43634 - 43659 -0.5 34 22 Tu 1 . - CDS 43726 - 43905 137 ## gi|191165574|ref|ZP_03027415.1| conserved domain protein - Prom 43941 - 44000 2.8 35 23 Op 1 . - CDS 44002 - 44631 433 ## EcHS_A0274 hypothetical protein 36 23 Op 2 . - CDS 44633 - 45040 289 ## ECO26_1570 hypothetical protein 37 24 Op 1 . - CDS 45338 - 45505 180 ## EcHS_A0277 hypothetical protein 38 24 Op 2 . - CDS 45522 - 45836 60 ## LF82_p101 hypothetical protein 39 24 Op 3 . - CDS 45848 - 46330 235 ## SFV_0264 hypothetical protein 40 24 Op 4 . - CDS 46314 - 47216 584 ## COG3723 Recombinational DNA repair protein (RecE pathway) 41 24 Op 5 . - CDS 47213 - 47521 282 ## SFV_0266 hypothetical protein 42 24 Op 6 . - CDS 47606 - 47758 74 ## SeSA_A0612 hypothetical protein 43 25 Tu 1 . - CDS 47877 - 48389 137 ## YE2335 hypothetical protein - Prom 48465 - 48524 3.6 - Term 48468 - 48497 0.4 44 26 Op 1 . - CDS 48602 - 49072 -27 ## ECO26_3378 hypothetical protein 45 26 Op 2 . - CDS 49081 - 49296 125 ## ECS88_2544 regulatory protein N - Term 49566 - 49608 1.4 46 27 Op 1 . - CDS 49745 - 50113 141 ## gi|256021954|ref|ZP_05435819.1| hypothetical protein E4_01160 47 27 Op 2 . - CDS 50133 - 50849 252 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 50876 - 50935 3.7 + Prom 50829 - 50888 8.0 48 28 Tu 1 . + CDS 50956 - 51150 228 ## ECL_03587 Cro protein 49 29 Op 1 . + CDS 51259 - 51537 212 ## EC55989_2636 transcriptional activator protein C1 (modular protein) 50 29 Op 2 . + CDS 51572 - 51718 61 ## ECO111_2710 hypothetical protein 51 29 Op 3 . + CDS 51711 - 52376 172 ## SeSA_A0620 GP59 52 30 Tu 1 . + CDS 52527 - 54365 287 ## EFER_2034 DNA transfer protein from phage - Term 54266 - 54292 -1.0 53 31 Tu 1 . - CDS 54390 - 54779 150 ## ECO111_2667 hypothetical protein - Prom 54948 - 55007 4.8 - Term 54989 - 55018 -0.2 54 32 Tu 1 . - CDS 55127 - 55381 104 ## UTI89_C2639 regulatory protein - Prom 55401 - 55460 4.5 + Prom 55225 - 55284 4.6 55 33 Op 1 . + CDS 55409 - 55633 132 ## ECO111_2664 putative transcriptional repressor 56 33 Op 2 . + CDS 55702 - 56580 565 ## COG3617 Prophage antirepressor + Term 56598 - 56629 2.5 + Prom 56597 - 56656 3.8 57 34 Tu 1 . + CDS 56681 - 59047 555 ## UTI89_C2636 endo-alpha-sialidase - Term 58953 - 58986 1.0 58 35 Tu 1 . - CDS 59067 - 59738 83 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 59860 - 59919 2.7 59 36 Tu 1 . - CDS 59931 - 61088 369 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Prom 61118 - 61177 4.4 - TRNA 61250 - 61324 66.4 # Arg CCT 0 0 60 37 Tu 1 . - CDS 61400 - 62332 924 ## COG2116 Formate/nitrite family of transporters + Prom 62489 - 62548 4.3 61 38 Tu 1 . + CDS 62626 - 63381 915 ## COG2853 Surface lipoprotein + Term 63386 - 63438 11.0 - Term 63384 - 63416 2.0 62 39 Tu 1 . - CDS 63563 - 64621 336 ## JW2342 hypothetical protein - Prom 64651 - 64710 9.9 - Term 64933 - 64965 5.6 63 40 Tu 1 . - CDS 64987 - 66327 1259 ## COG2067 Long-chain fatty acid transport protein - Prom 66428 - 66487 6.2 64 41 Tu 1 . + CDS 66699 - 66983 369 ## COG3691 Uncharacterized protein conserved in bacteria + Term 67001 - 67041 11.1 + Prom 67074 - 67133 4.9 65 42 Op 1 20/0.000 + CDS 67164 - 68474 1418 ## COG0183 Acetyl-CoA acetyltransferase 66 42 Op 2 5/0.250 + CDS 68474 - 70618 1669 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Prom 70659 - 70718 5.5 67 43 Tu 1 . + CDS 70836 - 71306 468 ## COG2062 Phosphohistidine phosphatase SixA + Term 71318 - 71362 10.1 + Prom 71753 - 71812 8.8 68 44 Op 1 6/0.125 + CDS 71987 - 72550 677 ## COG3539 P pilus assembly protein, pilin FimA + Term 72558 - 72595 6.2 69 44 Op 2 10/0.031 + CDS 72632 - 75277 2509 ## COG3188 P pilus assembly protein, porin PapC 70 44 Op 3 7/0.062 + CDS 75297 - 76049 604 ## COG3121 P pilus assembly protein, chaperone PapD + Term 76089 - 76126 -1.0 71 45 Op 1 4/0.406 + CDS 76223 - 76561 217 ## COG3539 P pilus assembly protein, pilin FimA 72 45 Op 2 4/0.406 + CDS 76558 - 77046 253 ## COG3539 P pilus assembly protein, pilin FimA 73 45 Op 3 . + CDS 77043 - 77582 460 ## COG3539 P pilus assembly protein, pilin FimA 74 45 Op 4 . + CDS 77584 - 78405 141 ## JW2329 hypothetical protein - Term 78406 - 78457 3.3 75 46 Tu 1 . - CDS 78476 - 79027 613 ## COG2840 Uncharacterized protein conserved in bacteria - Prom 79166 - 79225 3.4 + Prom 78996 - 79055 2.7 76 47 Op 1 3/0.625 + CDS 79193 - 80125 1634 ## PROTEIN SUPPORTED gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase 77 47 Op 2 7/0.062 + CDS 80160 - 81245 1160 ## COG0082 Chorismate synthase 78 47 Op 3 7/0.062 + CDS 81249 - 82073 500 ## COG3770 Murein endopeptidase 79 47 Op 4 5/0.250 + CDS 82073 - 82882 884 ## COG0730 Predicted permeases 80 47 Op 5 . + CDS 82882 - 83430 575 ## COG3101 Uncharacterized protein conserved in bacteria 81 47 Op 6 . + CDS 83464 - 83742 373 ## ECB_02250 hypothetical protein - Term 83575 - 83616 1.9 82 48 Tu 1 . - CDS 83863 - 85869 1352 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Prom 85894 - 85953 3.7 + Prom 85933 - 85992 3.5 83 49 Tu 1 . + CDS 86028 - 87248 1394 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 87328 - 87357 2.1 + Prom 87335 - 87394 4.5 84 50 Tu 1 . + CDS 87597 - 88691 986 ## COG0477 Permeases of the major facilitator superfamily + Term 88739 - 88769 1.8 85 51 Tu 1 . - CDS 88688 - 89683 817 ## B21_02206 hypothetical protein - Prom 89706 - 89765 3.4 86 52 Op 1 5/0.250 + CDS 89782 - 90918 1197 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 90931 - 90971 5.1 87 52 Op 2 5/0.250 + CDS 90984 - 91997 1197 ## COG0136 Aspartate-semialdehyde dehydrogenase 88 52 Op 3 5/0.250 + CDS 91997 - 92809 571 ## COG0101 Pseudouridylate synthase 89 52 Op 4 5/0.250 + CDS 92892 - 93551 558 ## COG0586 Uncharacterized membrane-associated protein + Prom 93554 - 93613 4.7 90 53 Op 1 15/0.000 + CDS 93707 - 94621 1029 ## COG0777 Acetyl-CoA carboxylase beta subunit + Term 94626 - 94671 10.6 91 53 Op 2 7/0.062 + CDS 94691 - 95959 1198 ## COG0285 Folylpolyglutamate synthase 92 53 Op 3 7/0.062 + CDS 95949 - 96611 676 ## COG3147 Uncharacterized protein conserved in bacteria + Term 96740 - 96781 6.4 + Prom 96775 - 96834 4.8 93 54 Op 1 18/0.000 + CDS 96870 - 97358 420 ## COG1286 Uncharacterized membrane protein, required for colicin V production 94 54 Op 2 5/0.250 + CDS 97395 - 98912 1611 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 95 54 Op 3 5/0.250 + CDS 99007 - 99576 484 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase + Term 99585 - 99615 3.6 + Prom 99583 - 99642 2.4 96 55 Tu 1 9/0.031 + CDS 99842 - 100624 950 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 100742 - 100785 0.2 + Prom 100675 - 100734 4.3 97 56 Op 1 12/0.000 + CDS 100845 - 101627 925 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 98 56 Op 2 12/0.000 + CDS 101717 - 102403 742 ## COG4215 ABC-type arginine transport system, permease component 99 56 Op 3 6/0.125 + CDS 102400 - 103116 597 ## COG4160 ABC-type arginine/histidine transport system, permease component 100 56 Op 4 3/0.625 + CDS 103124 - 103897 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 103904 - 103941 6.0 + Prom 104006 - 104065 3.4 101 57 Tu 1 . + CDS 104094 - 104984 467 ## COG5464 Uncharacterized conserved protein + Term 105006 - 105067 1.8 102 58 Op 1 3/0.625 - CDS 105032 - 105925 797 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase 103 58 Op 2 3/0.625 - CDS 105946 - 106308 422 ## COG1539 Dihydroneopterin aldolase 104 58 Op 3 . - CDS 106365 - 107012 589 ## COG0625 Glutathione S-transferase - Prom 107041 - 107100 3.9 + Prom 107061 - 107120 2.0 105 59 Op 1 2/0.812 + CDS 107148 - 107792 486 ## COG0625 Glutathione S-transferase 106 59 Op 2 3/0.625 + CDS 107848 - 108399 551 ## COG0622 Predicted phosphoesterase 107 60 Tu 1 . + CDS 108457 - 108999 655 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 109007 - 109032 -0.5 - Term 108992 - 109022 3.0 108 61 Tu 1 . - CDS 109032 - 110552 1639 ## COG1288 Predicted membrane protein - Prom 110629 - 110688 4.3 - Term 110664 - 110704 6.8 109 62 Op 1 14/0.000 - CDS 110742 - 112886 2418 ## COG0857 BioD-like N-terminal domain of phosphotransacetylase - Term 112918 - 112957 10.1 110 62 Op 2 . - CDS 112961 - 114163 1285 ## COG0282 Acetate kinase - Prom 114385 - 114444 3.0 + Prom 114284 - 114343 4.8 111 63 Op 1 2/0.812 + CDS 114501 - 114956 381 ## COG3092 Uncharacterized protein conserved in bacteria + Term 114982 - 115012 -0.5 112 63 Op 2 . + CDS 115039 - 115533 645 ## COG3013 Uncharacterized conserved protein 113 63 Op 3 2/0.812 + CDS 115526 - 116194 538 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 116214 - 116243 1.1 + Prom 116196 - 116255 2.5 114 64 Tu 1 . + CDS 116281 - 118113 1582 ## COG0471 Di- and tricarboxylate transporters + Term 118343 - 118378 -0.5 115 65 Op 1 6/0.125 - CDS 118172 - 118771 716 ## COG1896 Predicted hydrolases of HD superfamily 116 65 Op 2 . - CDS 118855 - 120072 1130 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 120124 - 120183 1.9 117 66 Tu 1 . + CDS 120992 - 121930 870 ## COG0583 Transcriptional regulator + Term 121974 - 122019 9.3 + Prom 122412 - 122471 6.5 118 67 Op 1 30/0.000 + CDS 122567 - 123004 500 ## COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) 119 67 Op 2 9/0.031 + CDS 123020 - 123682 727 ## COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 120 68 Op 1 15/0.000 + CDS 123788 - 125578 2218 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 121 68 Op 2 23/0.000 + CDS 125581 - 126081 467 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 122 68 Op 3 12/0.000 + CDS 126078 - 127415 1443 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 123 68 Op 4 18/0.000 + CDS 127468 - 130194 2833 ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) 124 68 Op 5 31/0.000 + CDS 130191 - 131168 1208 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 125 68 Op 6 28/0.000 + CDS 131183 - 131725 668 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 126 68 Op 7 30/0.000 + CDS 131737 - 132291 825 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 127 68 Op 8 26/0.000 + CDS 132288 - 132590 460 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 128 68 Op 9 30/0.000 + CDS 132587 - 134428 2285 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit + Prom 134500 - 134559 1.9 129 68 Op 10 22/0.000 + CDS 134592 - 136121 1815 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 130 68 Op 11 . + CDS 136128 - 137585 1858 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) + Term 137609 - 137641 3.0 - Term 137596 - 137628 3.0 131 69 Op 1 . - CDS 137669 - 138517 393 ## JW2270 hypothetical protein 132 69 Op 2 . - CDS 138576 - 138998 206 ## JW2269 hypothetical protein - Prom 139174 - 139233 4.4 + Prom 138949 - 139008 5.2 133 70 Tu 1 . + CDS 139207 - 139923 251 ## JW2268 hypothetical protein 134 71 Tu 1 . - CDS 140196 - 140699 632 ## JW2267 hypothetical protein - Prom 140725 - 140784 4.1 135 72 Tu 1 . - CDS 140802 - 141722 474 ## COG2234 Predicted aminopeptidases - Prom 141864 - 141923 8.1 + Prom 141698 - 141757 8.7 136 73 Tu 1 . + CDS 141932 - 143638 1108 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain + Term 143659 - 143704 14.6 - Term 143644 - 143692 9.2 137 74 Op 1 . - CDS 143709 - 144917 449 ## B21_02155 hypothetical protein - Prom 144977 - 145036 4.0 - Term 145060 - 145086 -0.6 138 74 Op 2 . - CDS 145108 - 146025 619 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 146051 - 146110 5.0 + Prom 146010 - 146069 4.9 139 75 Op 1 4/0.406 + CDS 146090 - 146551 471 ## COG2153 Predicted acyltransferase 140 75 Op 2 1/0.938 + CDS 146606 - 146911 527 ## COG4575 Uncharacterized conserved protein 141 75 Op 3 10/0.031 + CDS 146990 - 148132 904 ## COG1169 Isochorismate synthase + SSU_RRNA 148128 - 148481 100.0 # AY958844 [D:1..1893] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. + Prom 148407 - 148466 80.4 142 76 Op 1 15/0.000 + CDS 148545 - 150044 1552 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 143 76 Op 2 9/0.031 + CDS 150041 - 150799 602 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 144 76 Op 3 5/0.250 + CDS 150814 - 151671 959 ## COG0447 Dihydroxynaphthoic acid synthase 145 76 Op 4 6/0.125 + CDS 151671 - 152633 1100 ## COG1441 O-succinylbenzoate synthase 146 76 Op 5 . + CDS 152630 - 153985 1142 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Prom 154002 - 154061 4.9 147 77 Tu 1 . + CDS 154095 - 154361 199 ## B21_02145 hypothetical protein + Term 154498 - 154541 2.9 148 78 Op 1 9/0.031 - CDS 154355 - 154741 432 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 149 78 Op 2 5/0.250 - CDS 154741 - 155076 383 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 150 78 Op 3 6/0.125 - CDS 155073 - 156725 1475 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 151 78 Op 4 8/0.031 - CDS 156725 - 157615 826 ## COG0726 Predicted xylanase/chitin deacetylase 152 78 Op 5 12/0.000 - CDS 157612 - 159594 1707 ## COG0451 Nucleoside-diphosphate-sugar epimerases 153 78 Op 6 5/0.250 - CDS 159594 - 160562 843 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 154 78 Op 7 . - CDS 160566 - 161723 940 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - Prom 161761 - 161820 7.4 + Prom 161806 - 161865 5.8 155 79 Tu 1 . + CDS 162013 - 162615 238 ## ECUMN_2593 hypothetical protein + Term 162626 - 162661 5.1 - Term 162607 - 162650 1.6 156 80 Tu 1 . - CDS 162654 - 163079 382 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 163106 - 163165 7.3 157 81 Op 1 . + CDS 163358 - 163900 723 ## B21_02135 hypothetical protein + Prom 163919 - 163978 4.2 158 81 Op 2 4/0.406 + CDS 164000 - 165202 1208 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA + Prom 165204 - 165263 2.4 159 82 Op 1 5/0.250 + CDS 165422 - 166204 578 ## COG1414 Transcriptional regulator 160 82 Op 2 7/0.062 + CDS 166219 - 167424 1140 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Term 167432 - 167473 8.6 161 83 Op 1 6/0.125 + CDS 167481 - 168770 1356 ## COG0477 Permeases of the major facilitator superfamily 162 83 Op 2 . + CDS 168788 - 169591 930 ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase + Term 169595 - 169639 4.2 163 84 Op 1 1/0.938 - CDS 169632 - 169817 321 ## COG5464 Uncharacterized conserved protein 164 84 Op 2 3/0.625 - CDS 169830 - 170729 815 ## COG5464 Uncharacterized conserved protein - Prom 170756 - 170815 2.0 - Term 170868 - 170911 7.6 165 85 Op 1 8/0.031 - CDS 170922 - 172112 1157 ## COG0247 Fe-S oxidoreductase 166 85 Op 2 9/0.031 - CDS 172109 - 173368 1177 ## COG3075 Anaerobic glycerol-3-phosphate dehydrogenase 167 85 Op 3 . - CDS 173358 - 174986 1773 ## COG0578 Glycerol-3-phosphate dehydrogenase - Prom 175092 - 175151 4.5 + Prom 175080 - 175139 6.4 168 86 Op 1 6/0.125 + CDS 175259 - 176617 1457 ## COG2271 Sugar phosphate permease 169 86 Op 2 . + CDS 176622 - 177698 1160 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 177709 - 177742 4.5 - Term 177495 - 177538 -0.9 170 87 Tu 1 . - CDS 177740 - 177946 265 ## COG0583 Transcriptional regulator - Prom 177966 - 178025 4.1 + Prom 177917 - 177976 4.5 171 88 Tu 1 . + CDS 178161 - 178811 557 ## B21_02122 hypothetical protein - Term 178737 - 178769 -0.9 172 89 Op 1 8/0.031 - CDS 178865 - 179119 156 ## COG0633 Ferredoxin 173 89 Op 2 24/0.000 - CDS 179119 - 180249 1560 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 180397 - 180456 5.4 174 89 Op 3 . - CDS 180483 - 182768 2783 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 182905 - 182964 3.0 175 90 Tu 1 . + CDS 183512 - 187216 2921 ## COG3468 Type V secretory pathway, adhesin AidA 176 91 Tu 1 . - CDS 187344 - 188066 803 ## COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase - Prom 188093 - 188152 5.2 + Prom 188116 - 188175 6.4 177 92 Tu 1 . + CDS 188213 - 190840 3290 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 190862 - 190888 -1.0 + Prom 190855 - 190914 3.5 178 93 Op 1 2/0.812 + CDS 190989 - 192677 1285 ## COG4685 Uncharacterized protein conserved in bacteria 179 93 Op 2 3/0.625 + CDS 192674 - 193297 322 ## COG3234 Uncharacterized protein conserved in bacteria 180 93 Op 3 4/0.406 + CDS 193231 - 197835 3790 ## COG2373 Large extracellular alpha-helical protein 181 93 Op 4 5/0.250 + CDS 197836 - 199485 1131 ## COG5445 Predicted secreted protein 182 93 Op 5 . + CDS 199490 - 200266 602 ## COG4676 Uncharacterized protein conserved in bacteria + Term 200295 - 200351 12.6 - Term 200292 - 200329 7.1 183 94 Op 1 4/0.406 - CDS 200340 - 201524 1351 ## COG0183 Acetyl-CoA acetyltransferase 184 94 Op 2 4/0.406 - CDS 201555 - 202877 1001 ## COG2031 Short chain fatty acids transporter 185 94 Op 3 21/0.000 - CDS 202874 - 203524 520 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 186 94 Op 4 1/0.938 - CDS 203524 - 204186 594 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit - Prom 204264 - 204323 5.2 - Term 204313 - 204370 2.6 187 95 Op 1 13/0.000 - CDS 204382 - 205767 976 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 188 95 Op 2 . - CDS 205764 - 207590 1354 ## COG0642 Signal transduction histidine kinase + Prom 207614 - 207673 1.9 189 96 Tu 1 . + CDS 207757 - 210606 1964 ## COG0642 Signal transduction histidine kinase + Term 210618 - 210682 4.2 - Term 210605 - 210667 11.5 190 97 Op 1 12/0.000 - CDS 210806 - 211456 817 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 191 97 Op 2 . - CDS 211473 - 214145 2481 ## COG0642 Signal transduction histidine kinase - Prom 214366 - 214425 5.3 + Prom 214710 - 214769 3.6 192 98 Tu 1 . + CDS 214884 - 215987 1312 ## COG3203 Outer membrane protein (porin) + Term 216002 - 216043 5.0 + Prom 216015 - 216074 2.0 193 99 Op 1 3/0.625 + CDS 216099 - 217154 1294 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 194 99 Op 2 4/0.406 + CDS 217228 - 218292 650 ## COG2169 Adenosine deaminase 195 99 Op 3 4/0.406 + CDS 218295 - 218942 509 ## COG3145 Alkylated DNA repair protein 196 99 Op 4 3/0.625 + CDS 219018 - 220661 197 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Prom 220729 - 220788 5.9 197 100 Tu 1 . + CDS 220879 - 222525 1835 ## COG0579 Predicted dehydrogenase Predicted protein(s) >gi|223713595|gb|ACDM01000003.1| GENE 1 581 - 1996 1634 471 aa, chain + ## HITS:1 COG:gltX KEGG:ns NR:ns ## COG: gltX COG0008 # Protein_GI_number: 16130330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 471 1 471 471 983 100.0 0 MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDG MNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSKERLEALREEQMAKGEKPR YDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPIEFSNQELDDLIIRRTDGSPT YNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALKAPVPVYAHVSMINGDDGKKLSK RHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFTREEMIKYFTLNAVSKSASAFNT DKLLWLNHHYINALPPEYVATHLQWHIEQENIDTRNGPQLADLVKLLGERCKTLKEMAQS CRYFYEDFAEFDADAAKKHLRPVARQPLEVVRDKLAAITDWTAENVHHAIQATADELEVG MGKVGMPLRVAVTGAGQSPALDVTVHAIGKTRSIERINKALDFIAERENQQ >gi|223713595|gb|ACDM01000003.1| GENE 2 2048 - 2440 263 130 aa, chain - ## HITS:1 COG:no KEGG:JW2394 NR:ns ## KEGG: JW2394 # Name: yfeD # Def: predicted DNA-binding transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1 130 1 130 130 250 100.0 1e-65 MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF LARLDIDESA >gi|223713595|gb|ACDM01000003.1| GENE 3 2442 - 2801 347 119 aa, chain - ## HITS:1 COG:no KEGG:SDY_2596 NR:ns ## KEGG: SDY_2596 # Name: yfeC # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 119 1 119 119 216 100.0 2e-55 MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK >gi|223713595|gb|ACDM01000003.1| GENE 4 3421 - 5610 1718 729 aa, chain + ## HITS:1 COG:yfeA_3 KEGG:ns NR:ns ## COG: yfeA_3 COG2200 # Protein_GI_number: 16130327 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 472 729 1 258 258 524 100.0 1e-148 MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFLAWMPLCVMQSILFIFG WRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRY VWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYN MLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDFIA GYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLNYNQNFLQGVETEYSLAFILAVLIS FSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLLPNFRALEQAPEQEAGKSFCCLRIDNL EFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNI LNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEM VSGQTTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLP LIAQFNLSARFDLQVLESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRY HISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADII KIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYL IGRPQPLAD >gi|223713595|gb|ACDM01000003.1| GENE 5 5660 - 6862 1655 400 aa, chain - ## HITS:1 COG:nupC KEGG:ns NR:ns ## COG: nupC COG1972 # Protein_GI_number: 16130325 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1 400 1 400 400 653 100.0 0 MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGF SEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRA IGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMS IVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLG EYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMG VPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIA GAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL >gi|223713595|gb|ACDM01000003.1| GENE 6 7198 - 8436 1501 412 aa, chain + ## HITS:1 COG:ECs3271 KEGG:ns NR:ns ## COG: ECs3271 COG1914 # Protein_GI_number: 15832525 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Escherichia coli O157:H7 # 1 412 1 412 412 697 100.0 0 MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWAN LMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGF KLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLA QLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVA IAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGL SSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGI ALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL >gi|223713595|gb|ACDM01000003.1| GENE 7 8577 - 8903 292 108 aa, chain - ## HITS:1 COG:no KEGG:ECDH10B_2555 NR:ns ## KEGG: ECDH10B_2555 # Name: ypeC # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 108 1 108 108 165 100.0 6e-40 MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYE WRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH >gi|223713595|gb|ACDM01000003.1| GENE 8 9018 - 10274 981 418 aa, chain - ## HITS:1 COG:ECs3269 KEGG:ns NR:ns ## COG: ECs3269 COG0038 # Protein_GI_number: 15832523 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli O157:H7 # 1 418 1 418 418 638 100.0 0 MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWII GVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPE HPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEV PLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVA VWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSD YFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIV LVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV >gi|223713595|gb|ACDM01000003.1| GENE 9 10478 - 11443 1150 321 aa, chain + ## HITS:1 COG:ECs3268 KEGG:ns NR:ns ## COG: ECs3268 COG0837 # Protein_GI_number: 15832522 # Func_class: G Carbohydrate transport and metabolism # Function: Glucokinase # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 659 100.0 0 MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGC IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAE IGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVI MGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV HDNPGLLGSGAHLRQTLGHIL >gi|223713595|gb|ACDM01000003.1| GENE 10 11662 - 11988 583 108 aa, chain + ## HITS:1 COG:ECs3267 KEGG:ns NR:ns ## COG: ECs3267 COG1445 # Protein_GI_number: 15832521 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Escherichia coli O157:H7 # 1 108 1 108 108 169 100.0 1e-42 MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATI IIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ >gi|223713595|gb|ACDM01000003.1| GENE 11 12010 - 13257 1514 415 aa, chain + ## HITS:1 COG:ypdG KEGG:ns NR:ns ## COG: ypdG COG1299 # Protein_GI_number: 16130318 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 1 415 1 415 415 704 100.0 0 MAIKKRSATVVPGASGAAAAVKNPQASKTSFWGELPQHVMSGISRMVPTLIMGGVILAFS QLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSFGGVLFGFAIPMFAAFVAN SIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPVPSTFIGALIISIVAGYLVKW MNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTVLTAAGEKGAL MYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATIIDRR LTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTAAVWLG AVQWFPESAIWAWPLVTNLGVYMAGIALGAVITALMVVFLRLMMFRKGKLLIDSL >gi|223713595|gb|ACDM01000003.1| GENE 12 13272 - 14357 1179 361 aa, chain + ## HITS:1 COG:ypdF KEGG:ns NR:ns ## COG: ypdF COG0006 # Protein_GI_number: 16130317 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1 361 1 361 361 709 99.0 0 MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVE ARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSAT PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKAS FDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESH PLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHE DPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGE A >gi|223713595|gb|ACDM01000003.1| GENE 13 14357 - 15394 907 345 aa, chain + ## HITS:1 COG:ypdE KEGG:ns NR:ns ## COG: ypdE COG1363 # Protein_GI_number: 16130316 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1 345 1 345 345 675 100.0 0 MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMIC AHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDV SAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRE LHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIG NGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVM GPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR >gi|223713595|gb|ACDM01000003.1| GENE 14 15419 - 17914 2723 831 aa, chain + ## HITS:1 COG:ECs3263_2 KEGG:ns NR:ns ## COG: ECs3263_2 COG1080 # Protein_GI_number: 15832517 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli O157:H7 # 98 683 1 586 586 1113 99.0 0 MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKADAKSSLALIGTGTLFN DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN VLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTI LSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRD ISEQLLHITWPELKPRNKLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTL ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQK QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQ EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLAKPIGWQSEMGEVELVI MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF >gi|223713595|gb|ACDM01000003.1| GENE 15 17917 - 18774 635 285 aa, chain - ## HITS:1 COG:ypdC KEGG:ns NR:ns ## COG: ypdC COG2207 # Protein_GI_number: 16130314 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 285 1 285 285 574 100.0 1e-164 MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYG NLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPA RQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGD FLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARM ILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG >gi|223713595|gb|ACDM01000003.1| GENE 16 18787 - 19521 770 244 aa, chain - ## HITS:1 COG:ECs3261 KEGG:ns NR:ns ## COG: ECs3261 COG3279 # Protein_GI_number: 15832515 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1 244 1 244 244 483 100.0 1e-136 MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLD GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQ QQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNI TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQ LMHL >gi|223713595|gb|ACDM01000003.1| GENE 17 19536 - 21215 1534 559 aa, chain - ## HITS:1 COG:ECs3260 KEGG:ns NR:ns ## COG: ECs3260 COG3275 # Protein_GI_number: 15832514 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Escherichia coli O157:H7 # 1 559 7 565 565 1123 100.0 0 MLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPV EGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISG WINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGF IVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAI TNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLW EKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQS KINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDY IAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECG NRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEI AFYIPNQRTPVASQATLLL >gi|223713595|gb|ACDM01000003.1| GENE 18 21609 - 22847 1279 412 aa, chain + ## HITS:1 COG:yfdZ KEGG:ns NR:ns ## COG: yfdZ COG0436 # Protein_GI_number: 16130311 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 412 1 412 412 847 100.0 0 MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE >gi|223713595|gb|ACDM01000003.1| GENE 19 23339 - 24259 838 306 aa, chain - ## HITS:1 COG:ECs3258 KEGG:ns NR:ns ## COG: ECs3258 COG1560 # Protein_GI_number: 15832512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1 306 23 328 328 625 100.0 1e-179 MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRIGAMARPFLKRRESIAR KNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDSRVRKWFDVEGLDNLKRAQ MQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQLMEWVQTRGRMRSNKAMIGRN NLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVENVATTNGTYVLSRLSGAAMLTVT MVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKIIEKEIMRAPEQYLWIHRRFKTRPVG ESSLYI >gi|223713595|gb|ACDM01000003.1| GENE 20 24612 - 24854 282 80 aa, chain + ## HITS:1 COG:no KEGG:JW2374 NR:ns ## KEGG: JW2374 # Name: yfdY # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 80 1 80 80 115 100.0 5e-25 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF MFLAPACGLMIRFMVGYGRR >gi|223713595|gb|ACDM01000003.1| GENE 21 25502 - 26137 601 211 aa, chain + ## HITS:1 COG:no KEGG:JW2372 NR:ns ## KEGG: JW2372 # Name: yfdX # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 211 1 211 211 325 100.0 5e-88 MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDV QVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGIS ESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQK LLDKKQYYEANLALKGAEDGIIVDSEALFVN >gi|223713595|gb|ACDM01000003.1| GENE 22 26650 - 27900 1104 416 aa, chain + ## HITS:1 COG:yfdW KEGG:ns NR:ns ## COG: yfdW COG1804 # Protein_GI_number: 16130306 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 1 416 1 416 416 830 100.0 0 MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYF TMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLI FGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGL LAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHA RQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVE QPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQELGYSDDEIAAMKQNHAI >gi|223713595|gb|ACDM01000003.1| GENE 23 27954 - 29648 1081 564 aa, chain + ## HITS:1 COG:ECs3253 KEGG:ns NR:ns ## COG: ECs3253 COG0028 # Protein_GI_number: 15832507 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli O157:H7 # 1 564 1 564 564 1080 100.0 0 MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYA AAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEE LDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEA LTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQI PFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQ LDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMH EKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTW GVMGIGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRG DGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINV VIDPAAGTESGHITKLNPKQVAGN >gi|223713595|gb|ACDM01000003.1| GENE 24 29718 - 30662 668 314 aa, chain + ## HITS:1 COG:ECs3252 KEGG:ns NR:ns ## COG: ECs3252 COG0679 # Protein_GI_number: 15832506 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1 314 1 314 314 531 100.0 1e-151 MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV VTAPLWIYVSRLVS >gi|223713595|gb|ACDM01000003.1| GENE 25 30736 - 31881 533 381 aa, chain + ## HITS:1 COG:yfdE KEGG:ns NR:ns ## COG: yfdE COG1804 # Protein_GI_number: 16130303 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 1 381 14 394 394 796 100.0 0 MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQ SLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEIN PRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYL FSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKT QAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPH VMPGAATLDQHGEQIRQEFSS >gi|223713595|gb|ACDM01000003.1| GENE 26 31937 - 34876 1146 979 aa, chain - ## HITS:1 COG:evgS_2 KEGG:ns NR:ns ## COG: evgS_2 COG0642 # Protein_GI_number: 16130302 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 313 732 1 420 420 845 100.0 0 MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWLDT GNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQ TGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVFVMQKAP DSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKVKEGELDALVATQLN SRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPSEVLRLTEKW IKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFR KALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEV TAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINAL EVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATG QSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPE HYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQ EEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI SQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV SMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLF KPLTLDVLKTHLSQLHQVAHIAPQYRHLDIEALKNNTANDLQLMQEILMTFQHETHKDLP AAFQALEAGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLLNSV KEHIAELDQEIAVFCQKND >gi|223713595|gb|ACDM01000003.1| GENE 27 35535 - 36149 350 204 aa, chain - ## HITS:1 COG:ECs3248 KEGG:ns NR:ns ## COG: ECs3248 COG2197 # Protein_GI_number: 15832502 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 204 1 204 204 392 100.0 1e-109 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS RLMEKLECKSLMDLYTFAQRNKIG >gi|223713595|gb|ACDM01000003.1| GENE 28 36565 - 37728 637 387 aa, chain + ## HITS:1 COG:emrK KEGG:ns NR:ns ## COG: emrK COG1566 # Protein_GI_number: 16130300 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 387 1 387 387 711 100.0 0 MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQ VSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSA EVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKAL VMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVV PARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQN ATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPA YTSKALVIDTSPIEKEISNIISHNGQL >gi|223713595|gb|ACDM01000003.1| GENE 29 37728 - 39266 414 512 aa, chain + ## HITS:1 COG:emrY KEGG:ns NR:ns ## COG: emrY COG0477 # Protein_GI_number: 16130299 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 512 1 512 512 911 100.0 0 MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVIT SFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMA GPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVP MGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIII LTVVSVISLISLVIWESTSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQ ETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNKIDMRLLVTFSFLMYAVCYYWRSVTFM PTIDFTGIILPQFFQGFAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL TMTLWGRRESLHHSQLTATIDQFNPVFNSSSQIMDKYYGSLSGVLNEINNEITQQSLSIS ANEIFRMAAIAFILLTVLVWFAKPPFTAKGVG >gi|223713595|gb|ACDM01000003.1| GENE 30 39374 - 40702 1106 442 aa, chain - ## HITS:1 COG:dsdA KEGG:ns NR:ns ## COG: dsdA COG3048 # Protein_GI_number: 16130298 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Escherichia coli K12 # 1 442 1 442 442 871 100.0 0 MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFA PYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKAR GGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDEN SRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVH CFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGF YTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHL VWATGGGMVPEEEMNQYLAKGR >gi|223713595|gb|ACDM01000003.1| GENE 31 40720 - 42057 1326 445 aa, chain - ## HITS:1 COG:dsdX KEGG:ns NR:ns ## COG: dsdX COG2610 # Protein_GI_number: 16130297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1 445 1 445 445 715 100.0 0 MHSQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGTMMGMGPLDMVNAIESGIG GTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSVDVIMVLVGLICGITLFVEV GVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALYVANKLGADIGSVIV YGLLVGLMASLIGGPLFLKFLGQRLPFKPVPTEFADLKVRDEKTLPSLGATLFTILLPIA LMLVKTIAELNMARESGLYILVEFIGNPITAMFIAVFVAYYVLGIRQHMSMGTMLTHTEN GFGSIANILLIIGAGGAFNAILKSSSLADTLAVILSNMHMHPILLAWLVALILHAAVGSA TVAMMGATAIVAPMLPLYPDISPEIIAIAIGSGAIGCTIVTDSLFWLVKQYCGATLNETF KYYTTATFIASVVALAGTFLLSFII >gi|223713595|gb|ACDM01000003.1| GENE 32 42275 - 43210 351 311 aa, chain + ## HITS:1 COG:dsdC KEGG:ns NR:ns ## COG: dsdC COG0583 # Protein_GI_number: 16130296 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 311 1 311 311 636 100.0 0 MEPLREIRNRLLNGWQLSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQ LFVRSHRKVELTHEGKRVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVP ALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSP EYAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDL AVIAAMNHIGVAMGRKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFI IWLREQVKTTS >gi|223713595|gb|ACDM01000003.1| GENE 33 43394 - 43594 178 66 aa, chain - ## HITS:1 COG:no KEGG:JW5387 NR:ns ## KEGG: JW5387 # Name: torI # Def: response regulator inhibitor for tor operon # Organism: E.coli_J # Pathway: not_defined # 1 66 1 66 66 137 100.0 1e-31 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL LSRANG >gi|223713595|gb|ACDM01000003.1| GENE 34 43726 - 43905 137 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|191165574|ref|ZP_03027415.1| ## NR: gi|191165574|ref|ZP_03027415.1| conserved domain protein [Escherichia coli B7A] # 1 59 1 59 59 94 100.0 3e-18 MSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNEFVKINKEREGNEKS >gi|223713595|gb|ACDM01000003.1| GENE 35 44002 - 44631 433 209 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A0274 NR:ns ## KEGG: EcHS_A0274 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 208 1 208 213 398 97.0 1e-110 MSAITKERIKLFIKNPLDNGLTRGEQMELARIALASLEREQIRHEHAKWSDSTFGCVGPI GPLKHLSKEALEAAAEPDDLSEWADMQFLLWDAQRRAGISDAEITAAMENKLKINMERQW PEPKDGEPRLHIKEPGNSPVTPDGWISCSDRMPEDTKMLLAFSQGKIVAAYWNWVINPID YKKYRAFTYLSGYILDDVTHWMPLPEPPL >gi|223713595|gb|ACDM01000003.1| GENE 36 44633 - 45040 289 135 aa, chain - ## HITS:1 COG:no KEGG:ECO26_1570 NR:ns ## KEGG: ECO26_1570 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 135 1 135 135 247 97.0 7e-65 MNKIDYQALREAAEKAGEDKWQAKKINGDFFVIRHGSYTRQHGYTSYQPIAEIDCKQVRD FVAKANPATVLELLDELEAAKKRIAELKAREILLPERSSMLHRTDFHDDYQTVMAYKVSE VIDAIRATGIRIKGE >gi|223713595|gb|ACDM01000003.1| GENE 37 45338 - 45505 180 55 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A0277 NR:ns ## KEGG: EcHS_A0277 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 55 1 55 55 87 92.0 2e-16 MRGLAYNPGILPAEMIIRQRVKPMPSREELLKRNSFGSVNDNKYLNAMLRKGGKQ >gi|223713595|gb|ACDM01000003.1| GENE 38 45522 - 45836 60 104 aa, chain - ## HITS:1 COG:no KEGG:LF82_p101 NR:ns ## KEGG: LF82_p101 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_LF82 # Pathway: not_defined # 1 104 1 104 104 164 100.0 1e-39 MKKTPWEKWEVDFLREVAATMPVEVIAEKLERTEKAVMAKATRIGADIVSRLRGRRWTRA EVSLFGKFSAEEIAIATCRSIYSVRAMRYKLKKLDEERAGIRIN >gi|223713595|gb|ACDM01000003.1| GENE 39 45848 - 46330 235 160 aa, chain - ## HITS:1 COG:no KEGG:SFV_0264 NR:ns ## KEGG: SFV_0264 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1 160 1 160 160 253 94.0 2e-66 MSKLYEIANEYAKLMDSDLEPEMIADTIEGMEGEFTDKIEQLLSVIKNESGYAERLKEEA KSLNERAAVIQNKIDSIKSYIASSLEMVGKKNIRAGIHQVTIRKPSETVEIIDSSALPPE YLEFETTIKADKLAIKHQLKAGINIPGAQLKVGKPSLLIK >gi|223713595|gb|ACDM01000003.1| GENE 40 46314 - 47216 584 300 aa, chain - ## HITS:1 COG:recT KEGG:ns NR:ns ## COG: recT COG3723 # Protein_GI_number: 16129310 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Escherichia coli K12 # 2 220 27 251 269 72 28.0 1e-12 MSNIVEFVKQQEQLFCGALTEQTVTWAKESQFAIQYFQKNDYLAKTALANPTSAQNAIIN VAAIGITLNPASKLAYLVPRDGMVCLDISYMGLLHLAQSTGSIKWGQCKLVYSNDTYESN GLDSAPTHKYNAFGKRGSIVGGYCTVKTADGDYLTEEMSLAEIKAVEATSKAKNGPWKTF WEEMARKTIVKRASKYWPKAQRLDNAIHLLNEDEGMHQEPVMPHKSEEDIREDERKRQQE IMEKAQLLCDEMAQAENMDDLKRYFAEAYRLTSGMKLQQNVQAIYIECKAKLEVASEQTV >gi|223713595|gb|ACDM01000003.1| GENE 41 47213 - 47521 282 102 aa, chain - ## HITS:1 COG:no KEGG:SFV_0266 NR:ns ## KEGG: SFV_0266 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1 102 1 102 102 181 99.0 6e-45 MILTLNDKREISQIIASFTDEDYERINSEVDRLCKRCDPISEMLRSYKPDEHTKDAIDWL EDDDCNYQEKAAEWFWDAITERVKAEYAFAIFKRRHIFGEAA >gi|223713595|gb|ACDM01000003.1| GENE 42 47606 - 47758 74 50 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A0612 NR:ns ## KEGG: SeSA_A0612 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 50 1 50 50 79 100.0 5e-14 MRNEIAINHQMLRAAQNKAVIARFIGDSKMWLEANKAMKSAINLPWYRRK >gi|223713595|gb|ACDM01000003.1| GENE 43 47877 - 48389 137 170 aa, chain - ## HITS:1 COG:no KEGG:YE2335 NR:ns ## KEGG: YE2335 # Name: not_defined # Def: hypothetical protein # Organism: Y.enterocolitica # Pathway: not_defined # 10 163 7 169 176 124 43.0 2e-27 MAFIKILELISLSEINNVVKYNPISGEFTWLKSYGARKIGGTAGTITTSGYLRIFINGRH YAAHRLAWIITFGVEPEGIIDHINGIKTDNRICNLRLATYSQNSMNSKINTLNKSGCKGV TWKKESRKWAAYGKLNGKKKHLGYFNELEDAKKAYCDFARKHHGEFYRSK >gi|223713595|gb|ACDM01000003.1| GENE 44 48602 - 49072 -27 156 aa, chain - ## HITS:1 COG:no KEGG:ECO26_3378 NR:ns ## KEGG: ECO26_3378 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 156 1 156 156 298 99.0 6e-80 MTKSWSVPFPESETEHDGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIV DFKPAPNQWLQEWKQKRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDL AVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY >gi|223713595|gb|ACDM01000003.1| GENE 45 49081 - 49296 125 71 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2544 NR:ns ## KEGG: ECS88_2544 # Name: N # Def: regulatory protein N # Organism: E.coli_S88 # Pathway: not_defined # 1 71 60 130 130 115 95.0 5e-25 MQEQRLARKIALKLSGCVRADKAASLGSLRCKKAEEVERKQNRIYYRKPRSEMGVTCVGR QKMKLGSKPLI >gi|223713595|gb|ACDM01000003.1| GENE 46 49745 - 50113 141 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256021954|ref|ZP_05435819.1| ## NR: gi|256021954|ref|ZP_05435819.1| hypothetical protein E4_01160 [Escherichia sp. 4_1_40B] # 1 122 1 122 122 182 100.0 7e-45 MVGTAIASFLGMLAISTIYGLAHAFIAKSLSEKISQAWAHRSARFMILVVIAIQGISAFI LYGSSLYLLYQGATFTPYTSDYGTLYDGSEDISMAWIVFGLSMAVSVVADIIKVILVLTF AD >gi|223713595|gb|ACDM01000003.1| GENE 47 50133 - 50849 252 238 aa, chain - ## HITS:1 COG:YPO1233 KEGG:ns NR:ns ## COG: YPO1233 COG1974 # Protein_GI_number: 16121519 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Yersinia pestis # 4 234 3 235 240 243 51.0 2e-64 MENKKSLTTEQLEDAKRLKALYESKKKELGITQYSIADELGITQGAVGHYLNGRNALNVE VASGFARLLQVSIADFSQSIAAKVAEQAESLKSDANVRYAGEYRAGKRYPVLSSIQAGSW CEACEPYTIKDIDVWLESDAHIQGNAFWLKVEGDSMTAPVGLSIPEGTFVLFDTGREAIN GSLVIAKLSDSNEATFKKLIIDGGNKYLKGLNPAWPLVPINGNCKIIGVAIETKLRLV >gi|223713595|gb|ACDM01000003.1| GENE 48 50956 - 51150 228 64 aa, chain + ## HITS:1 COG:no KEGG:ECL_03587 NR:ns ## KEGG: ECL_03587 # Name: not_defined # Def: Cro protein # Organism: E.cloacae # Pathway: not_defined # 3 62 4 63 65 75 65.0 4e-13 MIRMTLADYAKIHGQAKAASDFGVIQCAISKAILAGRNIMVTVKPDGSVIGEEVRPFPSN KKNK >gi|223713595|gb|ACDM01000003.1| GENE 49 51259 - 51537 212 92 aa, chain + ## HITS:1 COG:no KEGG:EC55989_2636 NR:ns ## KEGG: EC55989_2636 # Name: C # Def: transcriptional activator protein C1 (modular protein) # Organism: E.coli_55989 # Pathway: not_defined # 1 92 30 121 121 162 97.0 3e-39 MQLTSTRKKANAITSNILNRIAVRGQRKVADALGINESQISRWKDSFIPKMGMLLAVLEW GVEDEELAELAKQVARMLTKEKAPKNGEFFEA >gi|223713595|gb|ACDM01000003.1| GENE 50 51572 - 51718 61 48 aa, chain + ## HITS:1 COG:no KEGG:ECO111_2710 NR:ns ## KEGG: ECO111_2710 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 48 1 48 48 68 100.0 7e-11 MTKQLSPYQDKIHKHILRDRFLSSFKQPGRFRAELEKVKLMQKEKGHE >gi|223713595|gb|ACDM01000003.1| GENE 51 51711 - 52376 172 221 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A0620 NR:ns ## KEGG: SeSA_A0620 # Name: not_defined # Def: GP59 # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 216 1 216 286 399 99.0 1e-110 MSNLATVTHLRPSQRPVERRVAEVEDGYTRLANALYEELIGADLTKNQSKVAHAICRKTY GYGKKMDRISDSQLAQITRLPRQKVNKAKNELIAMKVILREGQQIGPNKNIEEWQIEGCH YSGDNVTALVTKSVTKTVTALSPKQGHTKETITKEKRNNKNTMSESVRTECEKSPDRHEE TDKAFEEIFWCAGMRKAGKKNAASAFRTQFREWRKTIGVGC >gi|223713595|gb|ACDM01000003.1| GENE 52 52527 - 54365 287 612 aa, chain + ## HITS:1 COG:no KEGG:EFER_2034 NR:ns ## KEGG: EFER_2034 # Name: not_defined # Def: DNA transfer protein from phage # Organism: E.fergusonii # Pathway: not_defined # 1 612 2 613 614 1030 97.0 0 MKVTANGKTFTFPDGTSTEDIGTAIDEYFAGQAVQQQTVNQANNAPTREEPSLMQQAGDW LTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPY AQAGETIGGYLVPGVGTAGSMAIGSLAEAANQKGDFAQNAAKNAGVNLATQGVLSAAAKG IGRGITAIKGDIAPEVAKKIATSESMGVTPMTSDVIPPKNAFTRGLTQDAEGALLGTGSK RAEQYATRSKLVSNYFDRFGEYNPDDVVKSLTTTLRGRKDAAGAVINDVTNKMGNAAVDT TNTMNALNTAIARQERLGTSANQSLLTSLRNLREELANPATDLDVTFDLLRQHRTAFRSN VQGDAMVFPNQAKAATNMVENAMSKDLRNAVAKNLGASDAAKYLKANSDYANVYNKVLNK NIANKLNKASSEASPELINTVVLSRKPSDVKRIWSALDDKGKDAMRAAYVSKIAEKAGDS PAKFITEVNKLKSQSGGEIYNTIFSGKHMKELDALHEVLQQTARSDTANVVTQTGQSQAN RIRTIGATATLGVSMGLEAGFGAMMRLYESKAARNALLRLANTKAGTPAYERALSNAANA IRPLLATEATQQ >gi|223713595|gb|ACDM01000003.1| GENE 53 54390 - 54779 150 129 aa, chain - ## HITS:1 COG:no KEGG:ECO111_2667 NR:ns ## KEGG: ECO111_2667 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 129 1 129 129 221 89.0 7e-57 MKLIIAMAFLVFSFSVSAECWVVGDMHGISYSERNNFQPEEDGFSGTFIIKTNGEDASIT YSGTDAGGMAYKALSKNSIIGIGANGETQRVIDSWVIHPNGTVLMSKTISGYGNMDSTKA FVGKVKRKC >gi|223713595|gb|ACDM01000003.1| GENE 54 55127 - 55381 104 84 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C2639 NR:ns ## KEGG: UTI89_C2639 # Name: mnt # Def: regulatory protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 80 1 80 82 124 91.0 1e-27 MARDDPHFNFRMPLEVREKLKLRAEANGRSMNSELLQIVQDALSKPSPITGYRDEAERLA DQQAEQFKAIVFETLKKIYEKDLK >gi|223713595|gb|ACDM01000003.1| GENE 55 55409 - 55633 132 74 aa, chain + ## HITS:1 COG:no KEGG:ECO111_2664 NR:ns ## KEGG: ECO111_2664 # Name: not_defined # Def: putative transcriptional repressor # Organism: E.coli_O111_H- # Pathway: not_defined # 22 74 1 53 53 99 100.0 3e-20 MIEALYYILNRSTVDLYCEVNMKGMSKMPQFNLRWPKEVLDLVRKVAEENGRSVNSEIYQ RVMESFKKEGRIGA >gi|223713595|gb|ACDM01000003.1| GENE 56 55702 - 56580 565 292 aa, chain + ## HITS:1 COG:Z1818_1 KEGG:ns NR:ns ## COG: Z1818_1 COG3617 # Protein_GI_number: 15801289 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Escherichia coli O157:H7 EDL933 # 1 188 1 188 188 382 98.0 1e-106 MKSIAKAQNDFTIFKFGDSEIRVINKCGEPWFVAKDVCDALDLTNSRKALTALDDDEKGV TLSYTLGGEQNLSIVSESGMYTLVLRCRDAVNKGSVPHKFRKWVTAEVLPSIRKHGEYVK GKKTTVEERTPLRDAVNMLVGKKGLRYDDAYNMVHQRFGIDSIDELSIEQIPLAVEYIHR VVLEGEFIGKQEKKTNELSAKEANSLVWLWDYANRSQALFRELYPALKQIQSNYSGRCYD YGHEFSYVIGMARDVLINHTRDVDINEPDGPTNLSAWMRLKNKELPPSVHNY >gi|223713595|gb|ACDM01000003.1| GENE 57 56681 - 59047 555 788 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C2636 NR:ns ## KEGG: UTI89_C2636 # Name: sia # Def: endo-alpha-sialidase # Organism: E.coli_UTI89 # Pathway: not_defined # 1 145 1 158 981 240 78.0 2e-61 MTDITANVIVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNTENQIPVYVENEDGSHVP VSQPIIINAAGYPVYNGQIAKFVTVQGHSMAVYDAYGTQQFYFPNVLKYDPDQLRTEIFS DRMLLITPQHYGAKGDGVNDDTVAFIAAANALGDGGKLYIPTGIYNLIGPVNIPPVNMCG DGQGKTVIVFDNTTSPKDGFVFAAPTKHDVEFGLSHLTIKSKGGNGANAIYTPRGVGLNH LRPKPTFRFLSFCSETANIDSDEFAQKYGWEWSFNCGDSWQFTIERIDAVGCYQIAKSYN EQFLDGFIRTAPEEGILSMRVSDITTHNVANFFEIKQKTYFNLTNVDVARSLNGVYDAQD RVFESNRYAYGESIWTNVIINSQLHPINLDNRFLLIANGLAIHRAGGGYDHGNEWVGIRL IRPRVCTINGLEISSASGYTTTKKGIIIDGGDANNFINVSFGTLDIGAQIGVTSSIHGAN QATNFSNISINANVTTLLNIQNARGFNCSQYTASPLYTLANFMVNDDKVNNTFTLTNIDG KNNYTDNSIYLYNQEASEDTKRWRIDTRTGYTLSTQKDNGAQGNNAIIIRRSGIIVDSIE LRTKNDSGGYLLHTSPETHFSGLIKPTVDNVNSNGTSAFRWSQVYAGTGSINTSNEELKL RIEADEKTTESERLAALEIKENIWRFKFKDAVKIKSDGARIHFGVGAQTVGNILRKYGLD PNNYAFWCYDEWDDIYAPEVLIRSVKNNETGEWYDEEYYTGRQVIIKPAGYQYGIRYEEL LMFILMFI >gi|223713595|gb|ACDM01000003.1| GENE 58 59067 - 59738 83 223 aa, chain - ## HITS:1 COG:SA0151 KEGG:ns NR:ns ## COG: SA0151 COG0110 # Protein_GI_number: 15925860 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 36 178 51 189 208 132 46.0 8e-31 MVIDAMLSVQMTPQAKVSFEEQCFFHASGLVVAPINVGAFSYFGANCMLGGFTMGRFCSV APGVKIGLGEHETGYFSTHPFFFGSKNGFKIPDGIGMQRDLSQQKHGIPRIGHDVWIGAN AVIRRGITIGTGAVIAAGAIVTKNVEPYSIVGGVSAKHLGYRFEESIIKELLDSQWWEYD LSSFIGIDTRTPTTFLEQFNAVKDKKKASYKRFTILPSGEIVE >gi|223713595|gb|ACDM01000003.1| GENE 59 59931 - 61088 369 385 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 48 385 60 405 406 146 28 6e-34 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYANELAKMF DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY NHAQYLDKRREMMQWWADWIDEKVE >gi|223713595|gb|ACDM01000003.1| GENE 60 61400 - 62332 924 310 aa, chain - ## HITS:1 COG:yfdC KEGG:ns NR:ns ## COG: yfdC COG2116 # Protein_GI_number: 16130280 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1 310 1 310 310 593 100.0 1e-169 MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALL WSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTA VLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVM KNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILY LVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAE NIKKNYKNPA >gi|223713595|gb|ACDM01000003.1| GENE 61 62626 - 63381 915 251 aa, chain + ## HITS:1 COG:ECs3229 KEGG:ns NR:ns ## COG: ECs3229 COG2853 # Protein_GI_number: 15832483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Escherichia coli O157:H7 # 1 251 1 251 251 514 100.0 1e-146 MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADGLYPVLSWLTWPM SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA IQDDLKDIDSE >gi|223713595|gb|ACDM01000003.1| GENE 62 63563 - 64621 336 352 aa, chain - ## HITS:1 COG:no KEGG:JW2342 NR:ns ## KEGG: JW2342 # Name: yfdF # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 352 1 352 352 651 99.0 0 MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGISTCIKHLLELIKNAIRV NDDPYRFNINNPSVTYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEK THDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKK GDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSENARSASAWFESSKA IMAESFATGSDHQVVNELNGERLREPNDVFKRYGRAIRYDFQVDDAKYKCDHLKEIVSTL VGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAEYQNEINQPSAPGVNFDDI >gi|223713595|gb|ACDM01000003.1| GENE 63 64987 - 66327 1259 446 aa, chain - ## HITS:1 COG:fadL KEGG:ns NR:ns ## COG: fadL COG2067 # Protein_GI_number: 16130277 # Func_class: I Lipid transport and metabolism # Function: Long-chain fatty acid transport protein # Organism: Escherichia coli K12 # 1 446 3 448 448 836 100.0 0 MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPA LITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWG ASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKI ERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILY ELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMW EVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYY DDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSV KINEGPYQFESEGKAWLFGTNFNYAF >gi|223713595|gb|ACDM01000003.1| GENE 64 66699 - 66983 369 94 aa, chain + ## HITS:1 COG:yfcZ KEGG:ns NR:ns ## COG: yfcZ COG3691 # Protein_GI_number: 16130276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 94 9 102 102 161 100.0 2e-40 MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCK ITPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR >gi|223713595|gb|ACDM01000003.1| GENE 65 67164 - 68474 1418 436 aa, chain + ## HITS:1 COG:yfcY KEGG:ns NR:ns ## COG: yfcY COG0183 # Protein_GI_number: 16130275 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 436 1 436 436 793 100.0 0 MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGELLARSEIPAEVIE QLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRA GIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYST GLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVE DNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGY LRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSE RFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVT ACAAGGLGAAMVLEAE >gi|223713595|gb|ACDM01000003.1| GENE 66 68474 - 70618 1669 714 aa, chain + ## HITS:1 COG:yfcX_2 KEGG:ns NR:ns ## COG: yfcX_2 COG1250 # Protein_GI_number: 16130274 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 308 714 1 407 407 792 100.0 0 MEMTSAFTLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSA KPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQVIAAIHGACLGGGLELA LACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAL KLGLVDDVVPHSILLEAAVELAKKERPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKT QGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVTKDPG SDAPPAPLNSVGILGGGLMGGGIAYVTACKAGIPVRIKDINPQGINHALKYSWDQLEGKV RRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIF ASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQ GKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVG IDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPA IYPLIGTQGQGRISAPQVAERCVMLMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLG GPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARGESFWKTTATDLQ >gi|223713595|gb|ACDM01000003.1| GENE 67 70836 - 71306 468 156 aa, chain + ## HITS:1 COG:sixA KEGG:ns NR:ns ## COG: sixA COG2062 # Protein_GI_number: 16130273 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Escherichia coli K12 # 1 156 6 161 161 303 100.0 9e-83 MRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGD CLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAELCPGETP PMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKAI >gi|223713595|gb|ACDM01000003.1| GENE 68 71987 - 72550 677 187 aa, chain + ## HITS:1 COG:yfcV KEGG:ns NR:ns ## COG: yfcV COG3539 # Protein_GI_number: 16130272 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 187 1 187 187 299 100.0 2e-81 MSKFVKTAIAAAMVMGAFTSTATIAAGNNGTARFYGTIEDSVCSIVPDDHKLEVDMGDIG AEKLKNNGTTTPKNFQIRLQDCVFDTQETMTTTFTGTVSSANSGNYYTIFNTDTGAAFNN VSLAIGDSLGTSYKSGMGIDQKIVKDTATNKGKAKQTLNFKAWLVGAADAPDLGNFEANT TFQITYL >gi|223713595|gb|ACDM01000003.1| GENE 69 72632 - 75277 2509 881 aa, chain + ## HITS:1 COG:yfcUm KEGG:ns NR:ns ## COG: yfcUm COG3188 # Protein_GI_number: 16132272 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 881 1 881 881 1737 99.0 0 MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE PGKYNLQVQLNKQPLAEEYDIYWYAGEDDVSKSYACLTPELVAQFGLKEDVAKNLQWSHD GKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTWPDWDPPSRWDDGISGIIADYSITA QTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNDDDDEFGGDDTQKKWE WSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGV AHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDISTASM PYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDENYQSAAL GVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYR FSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQ TNYNIMLSHYFNMGSIRNMSVSLTGYRYEYDNRADKGMYISLSMPWGDNSTVSYNGNYGS GTDSSQVGYFSRVDDATHYQLNIGTSDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAG LSLQGGATLTTHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVN NYYRNQAYIDLNKLPENAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLQDGSHPP FGAEVKNDNEQTVGLVDDDGSVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLL LPCQHKGNVAPVVPDDIKPVIQEQTQQVTPTDPPVSVSANQ >gi|223713595|gb|ACDM01000003.1| GENE 70 75297 - 76049 604 250 aa, chain + ## HITS:1 COG:yfcS KEGG:ns NR:ns ## COG: yfcS COG3121 # Protein_GI_number: 16130271 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 250 1 250 250 442 100.0 1e-124 MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYL AQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREI PPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVI ISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSC QVDEEQSRKG >gi|223713595|gb|ACDM01000003.1| GENE 71 76223 - 76561 217 112 aa, chain + ## HITS:1 COG:yfcR KEGG:ns NR:ns ## COG: yfcR COG3539 # Protein_GI_number: 16130270 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 112 59 170 170 206 100.0 1e-53 MIADNVDGTNYRQDAKYTLNCTNSLANDLRMQLKGNTSTINGETVLSTNITGLGIRIENS ADNSLFAVGENSWTPFNINNQPQLKAVPVKASGAQLAAGEFNASLTMVVDYQ >gi|223713595|gb|ACDM01000003.1| GENE 72 76558 - 77046 253 162 aa, chain + ## HITS:1 COG:yfcQ KEGG:ns NR:ns ## COG: yfcQ COG3539 # Protein_GI_number: 16130269 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 162 1 162 162 322 100.0 2e-88 MRKTFLTLLCVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYG RKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTP LAINATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRVDYQ >gi|223713595|gb|ACDM01000003.1| GENE 73 77043 - 77582 460 179 aa, chain + ## HITS:1 COG:yfcP KEGG:ns NR:ns ## COG: yfcP COG3539 # Protein_GI_number: 16130268 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 179 1 179 179 335 100.0 2e-92 MNKSMIQSGGYVLLAGLILAMSSTLFAADNNLHFSGNLLSKSCALVVDGQYLAEVRFPTV SRQDLNVAGQSARVPVVFKLKDCKGPAGYNVKVTLTGVEDSEQPGFLALDTSSTAQGVGI GMEKTDGMQVAINNTNGATFALTNGNNDINFRAWLQAKSGRDVTIGEFTASLTATFEYI >gi|223713595|gb|ACDM01000003.1| GENE 74 77584 - 78405 141 273 aa, chain + ## HITS:1 COG:no KEGG:JW2329 NR:ns ## KEGG: JW2329 # Name: yfcO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 273 1 273 273 556 100.0 1e-157 MKILRWLFALVMLIATTEAMAAGHSVDVYYGYNGDSRNIATFNLKIMMPSAVYVGEYKSS QWLMTGEILQNVSWSGPPPAPSVKLIGYHQNINKASCPGLPSGWNCGYYTFEVIVSAEIE SYFSCPWLVIMNDSEASPGGVTYQGPDSHDTICPSVSVQPYDVSWNENYVSKSKLLTLQS TGGVVEKTLSTYLMKDGKLCDSTQMNETGGYCRWVAQMITFTASGCDKAEVSVTPNRHPI TDKQLHDMVVRVDTSSMQPIDSTCRFQYILNEL >gi|223713595|gb|ACDM01000003.1| GENE 75 78476 - 79027 613 183 aa, chain - ## HITS:1 COG:yfcN KEGG:ns NR:ns ## COG: yfcN COG2840 # Protein_GI_number: 16130266 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 183 1 183 183 349 100.0 2e-96 MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPVKRLIQEQADASHYFSD EFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACR REHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWLPP ELP >gi|223713595|gb|ACDM01000003.1| GENE 76 79193 - 80125 1634 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr. W3110] # 1 310 1 310 310 634 99 1e-180 MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIP EDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGEL INNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHG LIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKL TRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIA AREHFAIYKD >gi|223713595|gb|ACDM01000003.1| GENE 77 80160 - 81245 1160 361 aa, chain + ## HITS:1 COG:aroC KEGG:ns NR:ns ## COG: aroC COG0082 # Protein_GI_number: 16130264 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Escherichia coli K12 # 1 361 1 361 361 696 100.0 0 MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR W >gi|223713595|gb|ACDM01000003.1| GENE 78 81249 - 82073 500 274 aa, chain + ## HITS:1 COG:mepA KEGG:ns NR:ns ## COG: mepA COG3770 # Protein_GI_number: 16130263 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein endopeptidase # Organism: Escherichia coli K12 # 1 274 1 274 274 521 100.0 1e-148 MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGCIVGADTLPIQSEHYQV MRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPAGGRFNGGHASHQTGLDVD IFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEIFSLIKLAAQDKDVTRIFVNP AIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLPPSGDGCGAELQ SWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVI >gi|223713595|gb|ACDM01000003.1| GENE 79 82073 - 82882 884 269 aa, chain + ## HITS:1 COG:ECs3211 KEGG:ns NR:ns ## COG: ECs3211 COG0730 # Protein_GI_number: 15832465 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1 269 1 269 269 450 100.0 1e-126 METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALMAAGMSPANALATNKLQ ACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQYVQADVLRQILPILVICI GLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFGPAAGSFYALAFVTLCGFNLA KATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARMGSRLVLSKGQKLIRP MIVIVSAVMSAKLLYDSHGQEILHWLGMN >gi|223713595|gb|ACDM01000003.1| GENE 80 82882 - 83430 575 182 aa, chain + ## HITS:1 COG:yfcM KEGG:ns NR:ns ## COG: yfcM COG3101 # Protein_GI_number: 16130261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 182 1 182 182 379 100.0 1e-105 MNSTHHYEQLIEIFNSCFADDFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHE ISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQALDWLFCVAAGYPFNVSC DNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQFPWPEA LN >gi|223713595|gb|ACDM01000003.1| GENE 81 83464 - 83742 373 92 aa, chain + ## HITS:1 COG:no KEGG:ECB_02250 NR:ns ## KEGG: ECB_02250 # Name: yfcL # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 92 1 92 92 154 100.0 1e-36 MIAEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQS LEKAIGAGELSPRDQALVTDMWENLFQQASQQ >gi|223713595|gb|ACDM01000003.1| GENE 82 83863 - 85869 1352 668 aa, chain - ## HITS:1 COG:yfcK_2 KEGG:ns NR:ns ## COG: yfcK_2 COG0665 # Protein_GI_number: 16130259 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 256 668 1 413 413 830 99.0 0 MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLF VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPEL APWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF APAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREML CGVMEQTLPLPCSAPWFNRTGSSKREAAISGGGIASALLSLALLRRGWQVTLYCADEAPA LGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKS QHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ QQGLQIYYQYQLQNLSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVA GQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQ RLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEA VSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLL KGKAVKAG >gi|223713595|gb|ACDM01000003.1| GENE 83 86028 - 87248 1394 406 aa, chain + ## HITS:1 COG:fabB KEGG:ns NR:ns ## COG: fabB COG0304 # Protein_GI_number: 16130258 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli K12 # 1 406 1 406 406 770 100.0 0 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLI DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAM RGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLG KQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV EELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGT STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN IEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLKD >gi|223713595|gb|ACDM01000003.1| GENE 84 87597 - 88691 986 364 aa, chain + ## HITS:1 COG:yfcJ KEGG:ns NR:ns ## COG: yfcJ COG0477 # Protein_GI_number: 16130257 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 364 29 392 392 542 99.0 1e-154 MTVGLPLPVIPLFVHHELGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM LACGLAGGALLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGIVGPKHSGK VMSWNGMAIYGALAVGAPLGLLIHSHYGFAALAITTMVLPVLAWACNGTVRKVPALAGER PSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVM FGWMPDRFGGVKVAIVSLLVETVGLLLLWQAPGEWVALAGAALTGAGCSLIFPALGVEVV KRVPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILS FRRG >gi|223713595|gb|ACDM01000003.1| GENE 85 88688 - 89683 817 331 aa, chain - ## HITS:1 COG:no KEGG:B21_02206 NR:ns ## KEGG: B21_02206 # Name: flk # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 331 1 331 331 518 100.0 1e-145 MIQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIR HDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYI RHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLA AATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLK QPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFP PMMDTLQNMATRPALWILLVAIILMLVWLVR >gi|223713595|gb|ACDM01000003.1| GENE 86 89782 - 90918 1197 378 aa, chain + ## HITS:1 COG:pdxB KEGG:ns NR:ns ## COG: pdxB COG0111 # Protein_GI_number: 16130255 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1 378 1 378 378 743 99.0 0 MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVRSVTKVNESLLAGKPIK FVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLYDRTVG IVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQRADILTFHTPLFKD GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL NVELLKKVDIGTPHIAGYTLEGKARGTTQVFEAYSKFIGHEQHVALDTLLPAPEFGRITL HGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPGEFDKLRKNYLERREWSSLYVICDDAS AASLLCKLGFNAVHHPAR >gi|223713595|gb|ACDM01000003.1| GENE 87 90984 - 91997 1197 337 aa, chain + ## HITS:1 COG:usg KEGG:ns NR:ns ## COG: usg COG0136 # Protein_GI_number: 16130254 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Escherichia coli K12 # 1 337 1 337 337 643 100.0 0 MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAGEQLRFGGKTITVQDAA EFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFALEPDVPLVVPEVNPFVLTD YRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLISASAQGKKAVDALAGQSAKLL NGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVDEVRKILQDEGLMISASVVQAPV FYGHAQMVNFEALRPLAAEEARDAFVQGEDIVLSEENEFPTQVGDASGTPHLSVGCVRND YGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQEYLY >gi|223713595|gb|ACDM01000003.1| GENE 88 91997 - 92809 571 270 aa, chain + ## HITS:1 COG:truA KEGG:ns NR:ns ## COG: truA COG0101 # Protein_GI_number: 16130253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Escherichia coli K12 # 1 270 1 270 270 556 99.0 1e-158 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKAVPDDFHARFSATARRYRY IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA KAEGLYLVAVDYPDRYDLPKPPMGPLFLAD >gi|223713595|gb|ACDM01000003.1| GENE 89 92892 - 93551 558 219 aa, chain + ## HITS:1 COG:STM2367 KEGG:ns NR:ns ## COG: STM2367 COG0586 # Protein_GI_number: 16765694 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 388 96.0 1e-108 MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA LASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQF YEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT IPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAAK >gi|223713595|gb|ACDM01000003.1| GENE 90 93707 - 94621 1029 304 aa, chain + ## HITS:1 COG:ECs3200 KEGG:ns NR:ns ## COG: ECs3200 COG0777 # Protein_GI_number: 15832454 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Escherichia coli O157:H7 # 1 304 1 304 304 584 100.0 1e-167 MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNR LHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPV VAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKT SAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNPEAPREGVVVPPVPDQ EPEA >gi|223713595|gb|ACDM01000003.1| GENE 91 94691 - 95959 1198 422 aa, chain + ## HITS:1 COG:folC KEGG:ns NR:ns ## COG: folC COG0285 # Protein_GI_number: 16130250 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Escherichia coli K12 # 1 422 1 422 422 815 100.0 0 MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSLVAARLGVLKPAPFVFTVAGTNGK GTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDIS LTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPD RESIGREKAGIFRSEKPAIVGEPEMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSD AHGTLENLPLPLVPQPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPRVI FDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGP RGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGSFHTVAHVMEVIDARRSG GK >gi|223713595|gb|ACDM01000003.1| GENE 92 95949 - 96611 676 220 aa, chain + ## HITS:1 COG:ZdedD KEGG:ns NR:ns ## COG: ZdedD COG3147 # Protein_GI_number: 15802861 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 220 1 220 220 297 99.0 1e-80 MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKAGDRDEPDMMPAAT QALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPAPVAPPKPKPVEPPKPKVE APPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEIVGKLRGAGYRVYTSPSTPVQ GKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYTPN >gi|223713595|gb|ACDM01000003.1| GENE 93 96870 - 97358 420 162 aa, chain + ## HITS:1 COG:cvpA KEGG:ns NR:ns ## COG: cvpA COG1286 # Protein_GI_number: 16130248 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Escherichia coli K12 # 1 162 1 162 162 268 99.0 4e-72 MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELV RNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFL DSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLPRA >gi|223713595|gb|ACDM01000003.1| GENE 94 97395 - 98912 1611 505 aa, chain + ## HITS:1 COG:purF KEGG:ns NR:ns ## COG: purF COG0034 # Protein_GI_number: 16130247 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Escherichia coli K12 # 1 505 1 505 505 1027 100.0 0 MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARH MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKR RHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMV AFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEGQLF TRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVI PIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRD KNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATELIAHG REVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGVYVTKDVDQGYLDFLD TLRNDDAKAVQRQNEVENLEMHNEG >gi|223713595|gb|ACDM01000003.1| GENE 95 99007 - 99576 484 189 aa, chain + ## HITS:1 COG:ECs3195 KEGG:ns NR:ns ## COG: ECs3195 COG0163 # Protein_GI_number: 15832449 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Escherichia coli O157:H7 # 1 189 1 189 189 356 100.0 2e-98 MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTLSLETDFSLREVQALAD VTHDARDIAASISSGSFQTLGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVL CVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLDDVINQTVNRVLDQFAITLPE DLFARWQGA >gi|223713595|gb|ACDM01000003.1| GENE 96 99842 - 100624 950 260 aa, chain + ## HITS:1 COG:argT KEGG:ns NR:ns ## COG: argT COG0834 # Protein_GI_number: 16130245 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1 260 1 260 260 467 100.0 1e-131 MKKSILALSLLVGLSTAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMC KRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAK GSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVVAYANQDLVYSDLAAGRLDAA LQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELR QDGTYDKMAKKYFDFNVYGD >gi|223713595|gb|ACDM01000003.1| GENE 97 100845 - 101627 925 260 aa, chain + ## HITS:1 COG:ECs3193 KEGG:ns NR:ns ## COG: ECs3193 COG0834 # Protein_GI_number: 15832447 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 24 260 24 260 260 464 100.0 1e-131 MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELC KRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAK NSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAA FQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMR ADGTYEKLAKKYFDFDVYGG >gi|223713595|gb|ACDM01000003.1| GENE 98 101717 - 102403 742 228 aa, chain + ## HITS:1 COG:hisQ KEGG:ns NR:ns ## COG: hisQ COG4215 # Protein_GI_number: 16130243 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Escherichia coli K12 # 1 228 1 228 228 395 100.0 1e-110 MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRLSGLIFEGYTTLIRGVP DLVLMLLIFYGLQIALNTVTEAMGVGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVP KGHIEAATAFGFTRGQVFRRIMFPSMMRYALPGIGNNWQVILKSTALVSLLGLEDVVKAT QLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERRYSVGVKRADL >gi|223713595|gb|ACDM01000003.1| GENE 99 102400 - 103116 597 238 aa, chain + ## HITS:1 COG:ECs3191 KEGG:ns NR:ns ## COG: ECs3191 COG4160 # Protein_GI_number: 15832445 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Escherichia coli O157:H7 # 1 238 1 238 238 434 100.0 1e-122 MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFLAIGRVSSNKYIQFPIW LFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGLNCTVLALTLNTCAYTTEI FAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTA TVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLISLFRRAEKRWLQHVKPSSTH >gi|223713595|gb|ACDM01000003.1| GENE 100 103124 - 103897 256 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 20 232 20 221 223 103 34 8e-21 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLF GNPQSPRLQRFLKGSLK >gi|223713595|gb|ACDM01000003.1| GENE 101 104094 - 104984 467 296 aa, chain + ## HITS:1 COG:yfcI KEGG:ns NR:ns ## COG: yfcI COG5464 # Protein_GI_number: 16130240 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 296 1 296 296 584 100.0 1e-167 MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTTLKLEPNSFIDEDLRQY YSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAAMQNHLDAGYKELPLVLPM LFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDITVVPDDEIMQHRKMALLELIQ KHIRQRDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQTGDAQRFRAFIGEIAERAPQEK EKLMTIADRLREEGAMQGKHEEALRIAQEMLDRGLDRELVMMVTRLSPDDLIAQSH >gi|223713595|gb|ACDM01000003.1| GENE 102 105032 - 105925 797 297 aa, chain - ## HITS:1 COG:yfcH KEGG:ns NR:ns ## COG: yfcH COG1090 # Protein_GI_number: 16130239 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Escherichia coli K12 # 1 297 1 297 297 607 100.0 1e-174 MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPRVTLWQGLADQSNLNGV DAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINASDTPPSVLISGSATGYYGD LGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCLLRTGVVLAPDGGILGKMLPP FRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDNELRGPFNMVSPYPVRNEQFAHALGHA LHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRLEEAGFAFRWYDLEEALADVVR >gi|223713595|gb|ACDM01000003.1| GENE 103 105946 - 106308 422 120 aa, chain - ## HITS:1 COG:ECs3187 KEGG:ns NR:ns ## COG: ECs3187 COG1539 # Protein_GI_number: 15832441 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Escherichia coli O157:H7 # 1 120 1 120 120 211 100.0 2e-55 MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTV TKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDKLHALRYADSVSMTLSWQR >gi|223713595|gb|ACDM01000003.1| GENE 104 106365 - 107012 589 215 aa, chain - ## HITS:1 COG:yfcG KEGG:ns NR:ns ## COG: yfcG COG0625 # Protein_GI_number: 16130237 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1 215 1 215 215 442 100.0 1e-124 MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSP ADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNH AAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDL AMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS >gi|223713595|gb|ACDM01000003.1| GENE 105 107148 - 107792 486 214 aa, chain + ## HITS:1 COG:yfcF KEGG:ns NR:ns ## COG: yfcF COG0625 # Protein_GI_number: 16130236 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1 214 1 214 214 420 100.0 1e-117 MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVP LLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREER PTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVL HGDEVPERLVDYATFQWQRASVQRFIALSAKQSG >gi|223713595|gb|ACDM01000003.1| GENE 106 107848 - 108399 551 183 aa, chain + ## HITS:1 COG:ECs3184 KEGG:ns NR:ns ## COG: ECs3184 COG0622 # Protein_GI_number: 15832438 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Escherichia coli O157:H7 # 1 183 2 184 184 362 100.0 1e-100 MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVAERLN EVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQND VLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVA INP >gi|223713595|gb|ACDM01000003.1| GENE 107 108457 - 108999 655 180 aa, chain + ## HITS:1 COG:ECs3183 KEGG:ns NR:ns ## COG: ECs3183 COG0494 # Protein_GI_number: 15832437 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 180 1 180 180 329 100.0 1e-90 MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETK DFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALF SCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE >gi|223713595|gb|ACDM01000003.1| GENE 108 109032 - 110552 1639 506 aa, chain - ## HITS:1 COG:yfcC KEGG:ns NR:ns ## COG: yfcC COG1288 # Protein_GI_number: 16130233 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 506 8 513 513 921 100.0 0 MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVV DPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIG GAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAP LMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIAT LIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWV IWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLV GFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSG QAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLK VGATLLGLLFIMSSVVVIGAQLMGYH >gi|223713595|gb|ACDM01000003.1| GENE 109 110742 - 112886 2418 714 aa, chain - ## HITS:1 COG:pta_1 KEGG:ns NR:ns ## COG: pta_1 COG0857 # Protein_GI_number: 16130232 # Func_class: R General function prediction only # Function: BioD-like N-terminal domain of phosphotransacetylase # Organism: Escherichia coli K12 # 1 391 1 391 391 752 100.0 0 MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRTGGDAPDQTTTIVRAN SSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDAEVVLVEGLVPTRKHQFAQ SLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFGGAKNTNITGVIVNKLNAPVD EQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHLN ATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEI GALLLTGGYEMDARISKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEK VQEYVANYINADWIESLTATSERSRRLSPPAFRYQLTELARKAGKRIVLPEGDEPRTVKA AAICAERGIATCVLLGNPAEINRVAASQGVELGAGIEIVDPEVVRESYVGRLVELRKNKG MTETVAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSV FFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGS DVEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTG NTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ >gi|223713595|gb|ACDM01000003.1| GENE 110 112961 - 114163 1285 400 aa, chain - ## HITS:1 COG:ECs3180 KEGG:ns NR:ns ## COG: ECs3180 COG0282 # Protein_GI_number: 15832434 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 803 100.0 0 MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARIKWKMDGNKQEAALGAG AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDESVIQGIKDAASFA PLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEESYLYALPYNLYKEHGIRRYG AHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM GTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGLLGLTEVTSDCRYVEDNYATKEDAK RAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER NLAARFGKSGFINKEGTRPAVVIPTNEELVIAQDASRLTA >gi|223713595|gb|ACDM01000003.1| GENE 111 114501 - 114956 381 151 aa, chain + ## HITS:1 COG:yfbV KEGG:ns NR:ns ## COG: yfbV COG3092 # Protein_GI_number: 16130230 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 151 1 151 151 296 100.0 7e-81 MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLC WQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVL APVEGKPDYQALADTLKRAFKQLDKTFLDDL >gi|223713595|gb|ACDM01000003.1| GENE 112 115039 - 115533 645 164 aa, chain + ## HITS:1 COG:ECs3178 KEGG:ns NR:ns ## COG: ECs3178 COG3013 # Protein_GI_number: 15832432 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 164 7 170 170 318 100.0 3e-87 MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCR TIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHF DAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA >gi|223713595|gb|ACDM01000003.1| GENE 113 115526 - 116194 538 222 aa, chain + ## HITS:1 COG:yfbT KEGG:ns NR:ns ## COG: yfbT COG0637 # Protein_GI_number: 16130228 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1 222 1 222 222 402 100.0 1e-112 MPEEARVRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRH FMAGKSEADIAAEFTRLEHIEATETEGITALPGAIALLSHLNKAGIPWAIVTSGSMPVAR ARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAA GCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQPNGDVIIQ >gi|223713595|gb|ACDM01000003.1| GENE 114 116281 - 118113 1582 610 aa, chain + ## HITS:1 COG:ECs3176 KEGG:ns NR:ns ## COG: ECs3176 COG0471 # Protein_GI_number: 15832430 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli O157:H7 # 1 610 1 610 610 1085 100.0 0 MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLI AALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIP VVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTP IGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSP MIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQ FCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKR NGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPH AIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFA VALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAA KTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVC VVMIPMLFPF >gi|223713595|gb|ACDM01000003.1| GENE 115 118172 - 118771 716 199 aa, chain - ## HITS:1 COG:yfbR KEGG:ns NR:ns ## COG: yfbR COG1896 # Protein_GI_number: 16130226 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1 199 1 199 199 373 100.0 1e-103 MKQSHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAER IALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLI DEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFME IFVPSFHLSLDEISQDSPL >gi|223713595|gb|ACDM01000003.1| GENE 116 118855 - 120072 1130 405 aa, chain - ## HITS:1 COG:yfbQ KEGG:ns NR:ns ## COG: yfbQ COG0436 # Protein_GI_number: 16130225 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 405 1 405 405 853 100.0 0 MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPAPFGFDAPDEILVDVIR NLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGD EMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNP TGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSK TYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRLCANVPAQHAIQTALGGYQSISEFI TPGGRLYEQRNRAWELINDIPGVSCVKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEK VLLVQGTAFNWPWPDHFRIVTLPRVDDIELSLSKFARFLSGYHQL >gi|223713595|gb|ACDM01000003.1| GENE 117 120992 - 121930 870 312 aa, chain + ## HITS:1 COG:lrhA KEGG:ns NR:ns ## COG: lrhA COG0583 # Protein_GI_number: 16130224 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 312 1 312 312 600 100.0 1e-171 MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFAR HGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLTIGASDESADTILPFLLNR VSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSAFKALNLRTSPTHWYCAAEYI LQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPV EMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPMSAPE GDDSLLIERDIE >gi|223713595|gb|ACDM01000003.1| GENE 118 122567 - 123004 500 145 aa, chain + ## HITS:1 COG:ECs3172 KEGG:ns NR:ns ## COG: ECs3172 COG0838 # Protein_GI_number: 15832426 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 3 (chain A) # Organism: Escherichia coli O157:H7 # 1 145 3 147 147 266 100.0 9e-72 MSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARL RLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGA LDWTPARSRRERMNPETNSIANRQR >gi|223713595|gb|ACDM01000003.1| GENE 119 123020 - 123682 727 220 aa, chain + ## HITS:1 COG:ECs3171 KEGG:ns NR:ns ## COG: ECs3171 COG0377 # Protein_GI_number: 15832425 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 1 220 1 220 220 457 100.0 1e-129 MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFG LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP KWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER RPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI >gi|223713595|gb|ACDM01000003.1| GENE 120 123788 - 125578 2218 596 aa, chain + ## HITS:1 COG:nuoC_2 KEGG:ns NR:ns ## COG: nuoC_2 COG0649 # Protein_GI_number: 16130221 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Escherichia coli K12 # 198 596 1 399 399 845 100.0 0 MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFL KKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHV PTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFE LTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVD CVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVN VIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFR IGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGT TGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQC LNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGIN SYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR >gi|223713595|gb|ACDM01000003.1| GENE 121 125581 - 126081 467 166 aa, chain + ## HITS:1 COG:nuoE KEGG:ns NR:ns ## COG: nuoE COG1905 # Protein_GI_number: 16130220 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Escherichia coli K12 # 1 166 1 166 166 340 100.0 8e-94 MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK >gi|223713595|gb|ACDM01000003.1| GENE 122 126078 - 127415 1443 445 aa, chain + ## HITS:1 COG:nuoF KEGG:ns NR:ns ## COG: nuoF COG1894 # Protein_GI_number: 16130219 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Escherichia coli K12 # 1 445 1 445 445 922 100.0 0 MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLK GRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISA FALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYIC GEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNIS KSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFL TEAHLDLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDG LPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE AGIKQPFSNTHLINGIQPNLLKERW >gi|223713595|gb|ACDM01000003.1| GENE 123 127468 - 130194 2833 908 aa, chain + ## HITS:1 COG:nuoG KEGG:ns NR:ns ## COG: nuoG COG1034 # Protein_GI_number: 16130218 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Escherichia coli K12 # 1 908 3 910 910 1898 100.0 0 MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTR GRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVM TGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVY FGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPG ERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQ GAADILRQSKKVIGIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGG IYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKAREMAAAQKVADWQIAAILN IGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQ SKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMG LGIMGGGSLEEALTELETGRADAVVVLENDLHRHASAIRVNAALAKAPLVMVVDHQRTAI MENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLL SREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANIS VHEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGD PGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYI KLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHL EDLKEAQQ >gi|223713595|gb|ACDM01000003.1| GENE 124 130191 - 131168 1208 325 aa, chain + ## HITS:1 COG:ECs3166 KEGG:ns NR:ns ## COG: ECs3166 COG1005 # Protein_GI_number: 15832420 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Escherichia coli O157:H7 # 1 325 1 325 325 593 100.0 1e-169 MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQL VADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFL MMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIV NSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG EYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSF GWKICLPLTLINLLVTAAVILWQAQ >gi|223713595|gb|ACDM01000003.1| GENE 125 131183 - 131725 668 180 aa, chain + ## HITS:1 COG:ECs3165 KEGG:ns NR:ns ## COG: ECs3165 COG1143 # Protein_GI_number: 15832419 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli O157:H7 # 1 180 1 180 180 371 100.0 1e-103 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC VACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF EMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDGKDKGEAENEAKPIDVKSLLP >gi|223713595|gb|ACDM01000003.1| GENE 126 131737 - 132291 825 184 aa, chain + ## HITS:1 COG:ECs3164 KEGG:ns NR:ns ## COG: ECs3164 COG0839 # Protein_GI_number: 15832418 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Escherichia coli O157:H7 # 1 184 1 184 184 317 100.0 7e-87 MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYA GAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGID GTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVLSNRKDDSAKRKT EEHA >gi|223713595|gb|ACDM01000003.1| GENE 127 132288 - 132590 460 100 aa, chain + ## HITS:1 COG:ECs3163 KEGG:ns NR:ns ## COG: ECs3163 COG0713 # Protein_GI_number: 15832417 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Escherichia coli O157:H7 # 1 100 1 100 100 148 100.0 3e-36 MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQV MYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG >gi|223713595|gb|ACDM01000003.1| GENE 128 132587 - 134428 2285 613 aa, chain + ## HITS:1 COG:nuoL KEGG:ns NR:ns ## COG: nuoL COG1009 # Protein_GI_number: 16130213 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Escherichia coli K12 # 1 613 1 613 613 1054 100.0 0 MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTY SQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYT NLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVF LAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALV QTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQ NIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLV GAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLP QTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWG FDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSI GAVVVLALLMVLR >gi|223713595|gb|ACDM01000003.1| GENE 129 134592 - 136121 1815 509 aa, chain + ## HITS:1 COG:ECs3161 KEGG:ns NR:ns ## COG: ECs3161 COG1008 # Protein_GI_number: 15832415 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Escherichia coli O157:H7 # 1 509 1 509 509 889 100.0 0 MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGI PQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNL MWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQA SGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPL HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFY GAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCG QLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPV ITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGF YPQPILDTSHSAIGNIQQWFVNSVTTTRP >gi|223713595|gb|ACDM01000003.1| GENE 130 136128 - 137585 1858 485 aa, chain + ## HITS:1 COG:ECs3160 KEGG:ns NR:ns ## COG: ECs3160 COG1007 # Protein_GI_number: 15832414 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Escherichia coli O157:H7 # 61 485 1 425 425 707 100.0 0 MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGA MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLA NANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQ SGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST FLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGY SSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLF SYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAI GLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRL AMPLM >gi|223713595|gb|ACDM01000003.1| GENE 131 137669 - 138517 393 282 aa, chain - ## HITS:1 COG:no KEGG:JW2270 NR:ns ## KEGG: JW2270 # Name: yfbP # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 282 2 283 283 582 100.0 1e-165 MKLIPRSSDISPGIDGICPGPFPPNGFTVLTDAAYGNGDCFGLYWPIGQEHKLPIVCETY HDEWRIVPAFSSIKKFEEWLEVNDDDPHENGISIEDQDFAANLFRVARKCLSTGRLDDAL PLLQRATEQLPEVSEYWLALAIQYRRCKKTEAAAQAALNAYLGNWAFGVPDNKVIHLLSQ AADVPNFQDDPVIQCIKEQGLDLSFGGTKENNNYPLMQMCVDTYFAQRKPLQALTLLHNY AWIMSSETTAFQERYDFNIDEWRAKFRQLCLEYFGDSRTQFT >gi|223713595|gb|ACDM01000003.1| GENE 132 138576 - 138998 206 140 aa, chain - ## HITS:1 COG:no KEGG:JW2269 NR:ns ## KEGG: JW2269 # Name: yfbO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 140 19 158 158 270 100.0 9e-72 MTPLERITQLVNINGDVNNPDTPRPLLSLEDFFIDNNIHGSICCNVIPEQSPQAIYHHFL KIRERNNVSDVLVEITMFDDPDWPFSESILVITTASPEEVQSWFVEEIAPDECWEGWSED TEHGWVEVPVGMHPVTCWWD >gi|223713595|gb|ACDM01000003.1| GENE 133 139207 - 139923 251 238 aa, chain + ## HITS:1 COG:no KEGG:JW2268 NR:ns ## KEGG: JW2268 # Name: yfbN # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 238 1 238 238 462 100.0 1e-129 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL >gi|223713595|gb|ACDM01000003.1| GENE 134 140196 - 140699 632 167 aa, chain - ## HITS:1 COG:no KEGG:JW2267 NR:ns ## KEGG: JW2267 # Name: yfbM # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 167 1 167 167 323 100.0 2e-87 MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDKRWDFLHFGLTGTSAFD PAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLESLDRNELRKQFSIKRLNEM EIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNHALTVIVG >gi|223713595|gb|ACDM01000003.1| GENE 135 140802 - 141722 474 306 aa, chain - ## HITS:1 COG:yfbL KEGG:ns NR:ns ## COG: yfbL COG2234 # Protein_GI_number: 16130206 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Escherichia coli K12 # 1 306 20 325 325 604 99.0 1e-173 MIIFYQPWVNALPSTPRHASPEQLEKTVRYLTQTVHPRSADNIDNLNRSAEYIKEVFVSS GARVTSQDVPITGGPYKNIVADYGPADGPLIIIGAHYDSASSYENDQLTYTPGADDNASG VAGLLELARLLHQQVPKTGVQLVAYASEEPPFFRSDEMGSAVHAASLERPVKLMIALEMI GYYDSAPGSQNYPYPAMSWLYPDRGDFIAVVGRIQDINAVRQVKAALLSSQDLSVYSMNT PGFIPGIDFSDHLNYWQHDIPAIMITDTAFYRNKQYHLPGDTADRLNYQKMAQIVDGVIT LLYNSK >gi|223713595|gb|ACDM01000003.1| GENE 136 141932 - 143638 1108 568 aa, chain + ## HITS:1 COG:yfbK KEGG:ns NR:ns ## COG: yfbK COG2304 # Protein_GI_number: 16130205 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Escherichia coli K12 # 1 568 8 575 575 1037 100.0 0 MLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEV QQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLD VDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELA PAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKEL REQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGF IKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIAD VGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRV EHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIR WKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQ AKGEDPQGYRAEFIRLIELADGVTDISQ >gi|223713595|gb|ACDM01000003.1| GENE 137 143709 - 144917 449 402 aa, chain - ## HITS:1 COG:no KEGG:B21_02155 NR:ns ## KEGG: B21_02155 # Name: elaD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 402 2 403 403 765 100.0 0 MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP SKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQKIAAN AKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSLQKIV NKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPEIIFL HADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNYADRFKKYSAEEQYEIDFQ HRLANRNCYLDKYGDANINHYYRNLEIKHSQPKNRASGKRVS >gi|223713595|gb|ACDM01000003.1| GENE 138 145108 - 146025 619 305 aa, chain - ## HITS:1 COG:elaC KEGG:ns NR:ns ## COG: elaC COG1234 # Protein_GI_number: 16130203 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Escherichia coli K12 # 1 305 7 311 311 627 100.0 1e-179 MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKI FISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVE IGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKA GKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITME AKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDF TVFNV >gi|223713595|gb|ACDM01000003.1| GENE 139 146090 - 146551 471 153 aa, chain + ## HITS:1 COG:elaA KEGG:ns NR:ns ## COG: elaA COG2153 # Protein_GI_number: 16130202 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Escherichia coli K12 # 1 153 1 153 153 315 100.0 2e-86 MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELV AYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLETCTHHWPDKPVYLGAQAHL QNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA >gi|223713595|gb|ACDM01000003.1| GENE 140 146606 - 146911 527 101 aa, chain + ## HITS:1 COG:ECs3154 KEGG:ns NR:ns ## COG: ECs3154 COG4575 # Protein_GI_number: 15832408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 84 1 84 101 146 100.0 8e-36 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS YYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR >gi|223713595|gb|ACDM01000003.1| GENE 141 146990 - 148132 904 380 aa, chain + ## HITS:1 COG:menF KEGG:ns NR:ns ## COG: menF COG1169 # Protein_GI_number: 16130200 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Escherichia coli K12 # 76 380 1 305 356 595 99.0 1e-170 MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWLASQQTYPQFYWQQRNG DEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDPSQGNLLLPRLEWRRCGGK ATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQLIELAT KTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGSSPE RLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDICQRLQADT QTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRDLARQFIARH EPFTREWYAGSAGYLSLQQS >gi|223713595|gb|ACDM01000003.1| GENE 142 148545 - 150044 1552 499 aa, chain + ## HITS:1 COG:menD KEGG:ns NR:ns ## COG: menD COG1165 # Protein_GI_number: 16130199 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Escherichia coli K12 # 1 499 58 556 556 994 99.0 0 MGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGAN QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGE MDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKV ALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQW QASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAM QAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASG IDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSL LPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVV NDTDGAQTLQQLLAQVSHL >gi|223713595|gb|ACDM01000003.1| GENE 143 150041 - 150799 602 252 aa, chain + ## HITS:1 COG:yfbB KEGG:ns NR:ns ## COG: yfbB COG0596 # Protein_GI_number: 16130198 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 252 1 252 252 514 100.0 1e-146 MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLYVDLPGHGGSAAISVDG FDDVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAGLCGVIVEGGHPGLQNAEQ RAERQRSDRQWVQRFLTEPLTAVFADWYQQPVFASLNDDQRRELVALRSNNNGATLAAML EATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAAELAADCHVIPRAGHNAHRENPA GVIASLAQILRF >gi|223713595|gb|ACDM01000003.1| GENE 144 150814 - 151671 959 285 aa, chain + ## HITS:1 COG:menB KEGG:ns NR:ns ## COG: menB COG0447 # Protein_GI_number: 16130197 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Escherichia coli K12 # 1 285 1 285 285 602 100.0 1e-172 MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQAL ADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPK PVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKA REIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADC DGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP >gi|223713595|gb|ACDM01000003.1| GENE 145 151671 - 152633 1100 320 aa, chain + ## HITS:1 COG:menC KEGG:ns NR:ns ## COG: menC COG1441 # Protein_GI_number: 16130196 # Func_class: H Coenzyme transport and metabolism # Function: O-succinylbenzoate synthase # Organism: Escherichia coli K12 # 1 320 1 320 320 624 100.0 1e-179 MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQ SVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRAAPLCNGDPDDLILK LADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNP DYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLTG SLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV RRWPGSTLPVVEVDALERLL >gi|223713595|gb|ACDM01000003.1| GENE 146 152630 - 153985 1142 451 aa, chain + ## HITS:1 COG:menE KEGG:ns NR:ns ## COG: menE COG0318 # Protein_GI_number: 16130195 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 1 451 1 451 451 863 100.0 0 MIFSDWPWRHWRQVRGETIALRLNDEQLNWRELCARVDELASGFAVQGVVEGSGVMLRAW NTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHI QLVEGAHAATWQPTRLCSMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLL SLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGSPLPGREVKI VNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGE GIQPEEVERVIAAHPAVLQVFIVPVADKEFGHRPVAVMEYDHESVDLSEWVKDKLARFQQ PVRWLTLPPELKNGGIKISRQALKEWVQRQQ >gi|223713595|gb|ACDM01000003.1| GENE 147 154095 - 154361 199 88 aa, chain + ## HITS:1 COG:no KEGG:B21_02145 NR:ns ## KEGG: B21_02145 # Name: pmrD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 88 1 88 88 171 100.0 8e-42 MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGDLLSPLQNALYCINREK LHTVKVLSASSYSPDEWERQCKVAGKTQ >gi|223713595|gb|ACDM01000003.1| GENE 148 154355 - 154741 432 128 aa, chain - ## HITS:1 COG:yfbJ KEGG:ns NR:ns ## COG: yfbJ COG0697 # Protein_GI_number: 16130193 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 128 95 222 222 206 100.0 6e-54 MGLMWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLS VFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIF LPTTKQRY >gi|223713595|gb|ACDM01000003.1| GENE 149 154741 - 155076 383 111 aa, chain - ## HITS:1 COG:Z3516 KEGG:ns NR:ns ## COG: Z3516 COG0697 # Protein_GI_number: 15802807 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 EDL933 # 1 111 1 111 111 157 99.0 5e-39 MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLALACLGLAMVLWLLVLQN VPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGSTV >gi|223713595|gb|ACDM01000003.1| GENE 150 155073 - 156725 1475 550 aa, chain - ## HITS:1 COG:yfbI KEGG:ns NR:ns ## COG: yfbI COG1807 # Protein_GI_number: 16130192 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Escherichia coli K12 # 1 550 1 550 550 1046 100.0 0 MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFE KPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYL SLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKG FLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWV EHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIM PLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIAT FVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALL VGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGE LKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQE RLVLIQYRPK >gi|223713595|gb|ACDM01000003.1| GENE 151 156725 - 157615 826 296 aa, chain - ## HITS:1 COG:yfbH KEGG:ns NR:ns ## COG: yfbH COG0726 # Protein_GI_number: 16130191 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1 296 1 296 296 613 100.0 1e-175 MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDNMGRHLWRLVKPQFLWK MLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHEVGLHAWDHHAWQARSGNW DRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIEAKEAFHLRYNSDCRGAMPFR PLLESGNPGTAQIPVTLPTWDEVIGRDVKAEDFNGWLLNRILRDKGTPVYTIHAEVEGCA YQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVVRGNIAGREGWLGCQQIAGSR >gi|223713595|gb|ACDM01000003.1| GENE 152 157612 - 159594 1707 660 aa, chain - ## HITS:1 COG:yfbG_2 KEGG:ns NR:ns ## COG: yfbG_2 COG0451 # Protein_GI_number: 16130190 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 306 660 1 355 355 766 100.0 0 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD NVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWV LVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAI KHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKF TVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQ GSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS >gi|223713595|gb|ACDM01000003.1| GENE 153 159594 - 160562 843 322 aa, chain - ## HITS:1 COG:yfbF KEGG:ns NR:ns ## COG: yfbF COG0463 # Protein_GI_number: 16130189 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 322 1 322 322 658 100.0 0 MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVE ASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEG YDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHER STFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLINLMYDLVTCLTTTPLRMLSLLG SIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYT DVRARPRYFVQQVIRPSSKENE >gi|223713595|gb|ACDM01000003.1| GENE 154 160566 - 161723 940 385 aa, chain - ## HITS:1 COG:yfbE KEGG:ns NR:ns ## COG: yfbE COG0399 # Protein_GI_number: 16130188 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Escherichia coli K12 # 1 385 6 390 390 755 100.0 0 MAEGKAMSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQLTGNQHAIAV SSATAGMHITLMALKIGKGDEVITPSLTWVSTLNMISLLGATPVMVDVDRDTLMVTPEAI ESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAKGTA IFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGY KYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFI IRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICS LPLFPDMTTADADHVITALQQLAGQ >gi|223713595|gb|ACDM01000003.1| GENE 155 162013 - 162615 238 200 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_2593 NR:ns ## KEGG: ECUMN_2593 # Name: ais # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 200 1 200 200 378 99.0 1e-104 MLAFCRSSLKSKKYIIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFR HAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSA GKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKDKRDATFKPDYLD GLVMHVEKGKVYLDGEFVNH >gi|223713595|gb|ACDM01000003.1| GENE 156 162654 - 163079 382 141 aa, chain - ## HITS:1 COG:yfaO KEGG:ns NR:ns ## COG: yfaO COG0494 # Protein_GI_number: 16130186 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 141 1 141 141 286 100.0 7e-78 MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWAISGGGVEPGERIEEALRREIREELGE QLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSANREVKINEEFQDYAWVKPE DLVHYDLNVATRKTLRLKGLL >gi|223713595|gb|ACDM01000003.1| GENE 157 163358 - 163900 723 180 aa, chain + ## HITS:1 COG:no KEGG:B21_02135 NR:ns ## KEGG: B21_02135 # Name: yfaZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 180 1 180 180 275 100.0 4e-73 MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGD VAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYS PDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF >gi|223713595|gb|ACDM01000003.1| GENE 158 164000 - 165202 1208 400 aa, chain + ## HITS:1 COG:yfaY KEGG:ns NR:ns ## COG: yfaY COG1058 # Protein_GI_number: 16130184 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Escherichia coli K12 # 1 400 1 400 400 795 100.0 0 MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRERSQH ADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYFHERGRVMAPSNRKQAE LPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPPV CLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPIIELKLTGPASEQQAMEKLWLDVK RVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQFTGGLLALQLSRAGAPLLACEVVPS QEETLAQTAHWITERRANHFAGLALAVSGFENEHLNFALATPDGTFALRVRFSTTRYSLA IRQEVCAMMALNMLRRWLNGQDIASEHGWIEVVESMTLSV >gi|223713595|gb|ACDM01000003.1| GENE 159 165422 - 166204 578 260 aa, chain + ## HITS:1 COG:yfaX KEGG:ns NR:ns ## COG: yfaX COG1414 # Protein_GI_number: 16130183 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 260 1 260 260 521 100.0 1e-148 MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ ENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESS ATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEEL ARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA CARDISRLLGWKSPFDLQAS >gi|223713595|gb|ACDM01000003.1| GENE 160 166219 - 167424 1140 401 aa, chain + ## HITS:1 COG:yfaW KEGG:ns NR:ns ## COG: yfaW COG4948 # Protein_GI_number: 16130182 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 401 5 405 405 862 100.0 0 MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATPMSKYRDYEQSRQSFGI NVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLSATL YYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMG FIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFWLMLDCWMSQDVNYATKLAHACA PYNLKWIEECLPPQQYESYRELKRNAPVGMMVTSGEHHGTLQSFRTLSETGIDIMQPDVG WCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTMRPQF DPILLNEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRPYSH >gi|223713595|gb|ACDM01000003.1| GENE 161 167481 - 168770 1356 429 aa, chain + ## HITS:1 COG:yfaV KEGG:ns NR:ns ## COG: yfaV COG0477 # Protein_GI_number: 16130181 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 429 14 442 442 751 99.0 0 MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQIDTGLSNEAYALGAGIF FVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWADTEAKFLIVRTLLGAAEAG FFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFV IEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQLASEEQQKVTSRLSDALRNGRV WQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAIPWVAALFGTWLIPRYSD KTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGT ALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRT VAQTDVAHH >gi|223713595|gb|ACDM01000003.1| GENE 162 168788 - 169591 930 267 aa, chain + ## HITS:1 COG:yfaU KEGG:ns NR:ns ## COG: yfaU COG3836 # Protein_GI_number: 16130180 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Escherichia coli K12 # 1 267 1 267 267 527 100.0 1e-150 MNALLSNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQ LQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGER GVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL SASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT MLYSDALDQRLAMFKSGKNGPRIKGSY >gi|223713595|gb|ACDM01000003.1| GENE 163 169632 - 169817 321 61 aa, chain - ## HITS:1 COG:ECs3129 KEGG:ns NR:ns ## COG: ECs3129 COG5464 # Protein_GI_number: 15832383 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 61 244 308 308 112 92.0 2e-25 MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANN H >gi|223713595|gb|ACDM01000003.1| GENE 164 169830 - 170729 815 299 aa, chain - ## HITS:1 COG:yfaD KEGG:ns NR:ns ## COG: yfaD COG5464 # Protein_GI_number: 16130179 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 299 1 299 299 588 99.0 1e-168 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAY YSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPL LFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQ KHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQK ERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH >gi|223713595|gb|ACDM01000003.1| GENE 165 170922 - 172112 1157 396 aa, chain - ## HITS:1 COG:ECs3128 KEGG:ns NR:ns ## COG: ECs3128 COG0247 # Protein_GI_number: 15832382 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1 396 1 396 396 832 100.0 0 MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCK RCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKP VRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGK DLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIAT SSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCH MEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEES GADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA >gi|223713595|gb|ACDM01000003.1| GENE 166 172109 - 173368 1177 419 aa, chain - ## HITS:1 COG:glpB KEGG:ns NR:ns ## COG: glpB COG3075 # Protein_GI_number: 16130177 # Func_class: E Amino acid transport and metabolism # Function: Anaerobic glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1 419 1 419 419 809 100.0 0 MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDI HSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLR STWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLR NNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLP CSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADI PLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGV TTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ >gi|223713595|gb|ACDM01000003.1| GENE 167 173358 - 174986 1773 542 aa, chain - ## HITS:1 COG:ECs3126 KEGG:ns NR:ns ## COG: ECs3126 COG0578 # Protein_GI_number: 15832380 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 542 1 542 542 1050 99.0 0 MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDNLSFQATFIRACEEAGISAEA IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD AL >gi|223713595|gb|ACDM01000003.1| GENE 168 175259 - 176617 1457 452 aa, chain + ## HITS:1 COG:glpT KEGG:ns NR:ns ## COG: glpT COG2271 # Protein_GI_number: 16130175 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli K12 # 1 452 1 452 452 885 100.0 0 MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGF SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM IGGSILAVILLIVVMIGEKRRHEQLLQERNGG >gi|223713595|gb|ACDM01000003.1| GENE 169 176622 - 177698 1160 358 aa, chain + ## HITS:1 COG:glpQ KEGG:ns NR:ns ## COG: glpQ COG0584 # Protein_GI_number: 16130174 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 1 358 1 358 358 719 100.0 0 MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEG FDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ EGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTD WNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMV QDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE >gi|223713595|gb|ACDM01000003.1| GENE 170 177740 - 177946 265 68 aa, chain - ## HITS:1 COG:yfaH KEGG:ns NR:ns ## COG: yfaH COG0583 # Protein_GI_number: 16130173 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 68 1 68 68 116 100.0 1e-26 MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCME QLVAIGKI >gi|223713595|gb|ACDM01000003.1| GENE 171 178161 - 178811 557 216 aa, chain + ## HITS:1 COG:no KEGG:B21_02122 NR:ns ## KEGG: B21_02122 # Name: inaA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 216 1 216 216 432 100.0 1e-120 MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYP FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH AVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRR LRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM >gi|223713595|gb|ACDM01000003.1| GENE 172 178865 - 179119 156 84 aa, chain - ## HITS:1 COG:yfaE KEGG:ns NR:ns ## COG: yfaE COG0633 # Protein_GI_number: 16130171 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1 84 1 84 84 159 100.0 9e-40 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP LAFIQPGEILPCCCRAKGDIEIEM >gi|223713595|gb|ACDM01000003.1| GENE 173 179119 - 180249 1560 376 aa, chain - ## HITS:1 COG:ECs3118 KEGG:ns NR:ns ## COG: ECs3118 COG0208 # Protein_GI_number: 15832372 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Escherichia coli O157:H7 # 1 376 1 376 376 758 100.0 0 MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDR IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHS RSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNG KTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA LHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGL NKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVG QIDSEVDTDDLSNFQL >gi|223713595|gb|ACDM01000003.1| GENE 174 180483 - 182768 2783 761 aa, chain - ## HITS:1 COG:nrdA KEGG:ns NR:ns ## COG: nrdA COG0209 # Protein_GI_number: 16130169 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Escherichia coli K12 # 1 761 1 761 761 1584 100.0 0 MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHE TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLL EDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL FSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT SSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGG AATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSD VPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHC NTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEE LAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLT HKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWE ALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLT AYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI >gi|223713595|gb|ACDM01000003.1| GENE 175 183512 - 187216 2921 1234 aa, chain + ## HITS:1 COG:yfaL_2 KEGG:ns NR:ns ## COG: yfaL_2 COG3468 # Protein_GI_number: 16130168 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 789 1234 1 446 446 745 100.0 0 MIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASG GAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAG GYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYT STSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDI SVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTEND GAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDP QDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGII EGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGG VLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDA SDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDT RSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTAS GTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDG TVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLT NTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVN SITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQ EVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMER RDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVG GYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSE QEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQG DDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTG NISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW >gi|223713595|gb|ACDM01000003.1| GENE 176 187344 - 188066 803 240 aa, chain - ## HITS:1 COG:ubiG KEGG:ns NR:ns ## COG: ubiG COG2227 # Protein_GI_number: 16130167 # Func_class: H Coenzyme transport and metabolism # Function: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: Escherichia coli K12 # 1 240 1 240 240 500 100.0 1e-142 MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKV LDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHA GQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRM VPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK >gi|223713595|gb|ACDM01000003.1| GENE 177 188213 - 190840 3290 875 aa, chain + ## HITS:1 COG:gyrA KEGG:ns NR:ns ## COG: gyrA COG0188 # Protein_GI_number: 16130166 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Escherichia coli K12 # 1 875 1 875 875 1658 99.0 0 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL TEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA EPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE >gi|223713595|gb|ACDM01000003.1| GENE 178 190989 - 192677 1285 562 aa, chain + ## HITS:1 COG:yfaA KEGG:ns NR:ns ## COG: yfaA COG4685 # Protein_GI_number: 16130165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 562 17 578 578 1127 99.0 0 MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIELNEPDL FLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKL FSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKI NSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRW QASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDES ASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWY EDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRRE VSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMV DVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYV MKLAQMEPGAAWQWLPITWQPL >gi|223713595|gb|ACDM01000003.1| GENE 179 192674 - 193297 322 207 aa, chain + ## HITS:1 COG:ECs3112 KEGG:ns NR:ns ## COG: ECs3112 COG3234 # Protein_GI_number: 15832366 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 207 10 216 216 426 100.0 1e-119 MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVR FAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQ YNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLM TWKDTRWIPNDSNPNFIGIYRLNFLAR >gi|223713595|gb|ACDM01000003.1| GENE 180 193231 - 197835 3790 1534 aa, chain + ## HITS:1 COG:ECs3111 KEGG:ns NR:ns ## COG: ECs3111 COG2373 # Protein_GI_number: 15832365 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli O157:H7 # 1 1534 1 1534 1534 2985 98.0 0 MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLAD SSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQY LGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQ FSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLV EAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGV TDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRV DVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVA GGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVK NARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTV SASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWL RLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTV DIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQY EARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVE LTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQA LSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWR ITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVT KFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVE QQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPL SLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYAD WQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAI ARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQY AWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPP VVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNI PVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLP PGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQ KGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK >gi|223713595|gb|ACDM01000003.1| GENE 181 197836 - 199485 1131 549 aa, chain + ## HITS:1 COG:yfaQ KEGG:ns NR:ns ## COG: yfaQ COG5445 # Protein_GI_number: 16130163 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Escherichia coli K12 # 1 549 1 549 549 1085 99.0 0 MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGS LWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHI GADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEA KIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATV LNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITF VSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANR EGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLFWRQAT AQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYN EPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIE TLTRQLLMD >gi|223713595|gb|ACDM01000003.1| GENE 182 199490 - 200266 602 258 aa, chain + ## HITS:1 COG:yfaP KEGG:ns NR:ns ## COG: yfaP COG4676 # Protein_GI_number: 16130162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 258 1 258 258 516 100.0 1e-146 MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADD QNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISP DGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGA LDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETF IVPMRNAGELTLVKSFDW >gi|223713595|gb|ACDM01000003.1| GENE 183 200340 - 201524 1351 394 aa, chain - ## HITS:1 COG:atoB KEGG:ns NR:ns ## COG: atoB COG0183 # Protein_GI_number: 16130161 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 394 1 394 394 655 100.0 0 MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAG LGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSL APYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELA LHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAG TVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKA LQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILV TLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN >gi|223713595|gb|ACDM01000003.1| GENE 184 201555 - 202877 1001 440 aa, chain - ## HITS:1 COG:atoE KEGG:ns NR:ns ## COG: atoE COG2031 # Protein_GI_number: 16130160 # Func_class: I Lipid transport and metabolism # Function: Short chain fatty acids transporter # Organism: Escherichia coli K12 # 1 440 1 440 440 795 100.0 0 MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAF GMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVG AMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGD TLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERL EESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAA RSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSG GGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMG YCITALLFSGVIFVIGLTLF >gi|223713595|gb|ACDM01000003.1| GENE 185 202874 - 203524 520 216 aa, chain - ## HITS:1 COG:atoA KEGG:ns NR:ns ## COG: atoA COG2057 # Protein_GI_number: 16130159 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Escherichia coli K12 # 1 216 1 216 216 426 100.0 1e-119 MDAKQRIARRVAQELRDGDIVNLGIGLPTMVANYLPEGIHITLQSENGFLGLGPVTTAHP DLVNAGGQPCGVLPGAAMFDSAMSFALIRGGHIDACVLGGLQVDEEANLANWVVPGKMVP GMGGAMDLVTGSRKVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTELAVFRFIDGK MWLTEIADGCDLATVRAKTEARFEVAADLNTQRGDL >gi|223713595|gb|ACDM01000003.1| GENE 186 203524 - 204186 594 220 aa, chain - ## HITS:1 COG:atoD KEGG:ns NR:ns ## COG: atoD COG1788 # Protein_GI_number: 16130158 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Escherichia coli K12 # 1 220 1 220 220 411 100.0 1e-115 MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTG IGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTP TGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIAL AADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQESK >gi|223713595|gb|ACDM01000003.1| GENE 187 204382 - 205767 976 461 aa, chain - ## HITS:1 COG:atoC KEGG:ns NR:ns ## COG: atoC COG2204 # Protein_GI_number: 16130157 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1 461 1 461 461 911 100.0 0 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPE MDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL QLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKE LIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPG NIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKR IIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGIDPADV >gi|223713595|gb|ACDM01000003.1| GENE 188 205764 - 207590 1354 608 aa, chain - ## HITS:1 COG:atoS_3 KEGG:ns NR:ns ## COG: atoS_3 COG0642 # Protein_GI_number: 16130156 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 331 608 1 278 278 529 100.0 1e-150 MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVLSEKEKKLSAVVNLLNQ ALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAGYYNKMLDAIITYAPSALY QNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSMLPIERNGEILGYIWANELTED IRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTRLPQLP GEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRH ELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALEISFPGRDRTIELSVTTSRIHNTHGEM IGALVIFSDLTARKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSD PIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARV DFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDN GCGIDLSLQKKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI NPQGNQTV >gi|223713595|gb|ACDM01000003.1| GENE 189 207757 - 210606 1964 949 aa, chain + ## HITS:1 COG:rcsC_1 KEGG:ns NR:ns ## COG: rcsC_1 COG0642 # Protein_GI_number: 16130155 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 17 716 1 700 700 1439 100.0 0 MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQ RFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRG SLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINK YRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTL PMGVTILDENGHTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIV YSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNR KIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSN NTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHE LRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEP REFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKF TDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI CEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQ FLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGE WVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLL ADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS >gi|223713595|gb|ACDM01000003.1| GENE 190 210806 - 211456 817 216 aa, chain - ## HITS:1 COG:ECs3106 KEGG:ns NR:ns ## COG: ECs3106 COG2197 # Protein_GI_number: 15832360 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 400 100.0 1e-111 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP GDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKAL AALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIK TISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD >gi|223713595|gb|ACDM01000003.1| GENE 191 211473 - 214145 2481 890 aa, chain - ## HITS:1 COG:yojN_1 KEGG:ns NR:ns ## COG: yojN_1 COG0642 # Protein_GI_number: 16130153 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 700 1 700 700 1286 100.0 0 MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAI QKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDNS TLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVD SRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP PGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGT LLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTENVPSTAVNNELRILRAINEEI VSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTMAEQHQGIIQATINNELYEIR MFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRMIFMKNIGDALKEPAQSL AESAAKLNAPESKQLANQADVLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSV LPAIKRKGLQLLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESS EDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNI KTRDGLGTRYSVHIKMLAADPEVEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATC ITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVL QLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQT AHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL >gi|223713595|gb|ACDM01000003.1| GENE 192 214884 - 215987 1312 367 aa, chain + ## HITS:1 COG:ompC KEGG:ns NR:ns ## COG: ompC COG3203 # Protein_GI_number: 16130152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 367 1 367 367 638 100.0 0 MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLG FKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYD VTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGE GFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAE TYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQ SKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVA LGLVYQF >gi|223713595|gb|ACDM01000003.1| GENE 193 216099 - 217154 1294 351 aa, chain + ## HITS:1 COG:ECs3103 KEGG:ns NR:ns ## COG: ECs3103 COG1477 # Protein_GI_number: 15832357 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Escherichia coli O157:H7 # 1 351 1 351 351 698 100.0 0 MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAE LKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGA MDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLY VDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENA VQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADA WDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN >gi|223713595|gb|ACDM01000003.1| GENE 194 217228 - 218292 650 354 aa, chain + ## HITS:1 COG:ada_1 KEGG:ns NR:ns ## COG: ada_1 COG2169 # Protein_GI_number: 16130150 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Escherichia coli K12 # 1 184 1 184 184 363 100.0 1e-100 MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRENVSFYANASE ALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLF KATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFPDSSSYYRKADETLGMTAKQF RHGGENLAVRYALADCELGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADL MFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKP KAVRAVASACAANKLAIIIPCHRVVRGDGTLSGYRWGVSRKAQLLRREAENEER >gi|223713595|gb|ACDM01000003.1| GENE 195 218295 - 218942 509 215 aa, chain + ## HITS:1 COG:alkB KEGG:ns NR:ns ## COG: alkB COG3145 # Protein_GI_number: 16130149 # Func_class: L Replication, recombination and repair # Function: Alkylated DNA repair protein # Organism: Escherichia coli K12 # 1 215 2 216 216 447 99.0 1e-126 MDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAM TNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINR YAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGE SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE >gi|223713595|gb|ACDM01000003.1| GENE 196 219018 - 220661 197 547 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 326 541 133 357 398 80 32 6e-14 MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSLLVLPEFLGLLLL LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLAGLTSDVRNITI AFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAITIWGGFVLVARVYKHMATLRE TEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDAQEYRHHIIRADTFHLSAVNWSN IMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLTAQVAFNKLN KFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGS GKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVWLFNQLLGPEGKPA NPQLVEKWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQ DPHFRREFYQVLLPLMQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR DAVARTA >gi|223713595|gb|ACDM01000003.1| GENE 197 220879 - 222525 1835 548 aa, chain + ## HITS:1 COG:yojH KEGG:ns NR:ns ## COG: yojH COG0579 # Protein_GI_number: 16130147 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli K12 # 1 548 1 548 548 1078 100.0 0 MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSATLGTYLRELEPEWSMT MVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAINEAFQISRQFWA HQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKE WAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRND DNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSE NPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFSTKFLKNGSLWDL MSSTTTSNVMPMMHVGLDNFDLVKYLVSQVMLSEEDRFEALKEYYPQAKKEDWRLWQAGQ RVQIIKRDAEKGGVLRLGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEKVFGDRVSS PQWQATLKAIVPSYGRKLNGDVAATERELQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQ KEVADIAL Prediction of potential genes in microbial genomes Time: Mon May 16 18:33:55 2011 Seq name: gi|223713594|gb|ACDM01000004.1| Escherichia sp. 4_1_40B cont1.4, whole genome shotgun sequence Length of sequence - 175385 bp Number of predicted genes - 152, with homology - 150 Number of transcription units - 74, operones - 32 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 44 - 532 523 ## COG4574 Serine protease inhibitor ecotin - Prom 576 - 635 3.4 2 2 Tu 1 . - CDS 667 - 831 66 ## BWG_1982 hypothetical protein - Prom 873 - 932 5.2 3 3 Op 1 10/0.029 + CDS 1424 - 1687 332 ## COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase 4 3 Op 2 10/0.029 + CDS 1684 - 4170 3236 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 5 3 Op 3 7/0.059 + CDS 4177 - 4872 477 ## COG1145 Ferredoxin 6 3 Op 4 4/0.324 + CDS 4859 - 5722 669 ## COG0348 Polyferredoxin 7 3 Op 5 7/0.059 + CDS 5698 - 6168 497 ## COG3043 Nitrate reductase cytochrome c-type subunit 8 3 Op 6 3/0.471 + CDS 6178 - 6780 562 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 9 3 Op 7 14/0.000 + CDS 6793 - 7416 536 ## COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component 10 3 Op 8 14/0.000 + CDS 7416 - 8075 774 ## COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component 11 3 Op 9 9/0.029 + CDS 8117 - 8854 744 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 12 3 Op 10 9/0.029 + CDS 8851 - 9060 277 ## COG3114 Heme exporter protein D 13 3 Op 11 16/0.000 + CDS 9057 - 9536 683 ## COG2332 Cytochrome c-type biogenesis protein CcmE 14 3 Op 12 11/0.029 + CDS 9533 - 11476 2372 ## COG1138 Cytochrome c biogenesis factor 15 3 Op 13 5/0.118 + CDS 11473 - 12030 674 ## COG0526 Thiol-disulfide isomerase and thioredoxins 16 3 Op 14 . + CDS 12027 - 13079 1226 ## COG4235 Cytochrome c biogenesis factor + Term 13134 - 13187 3.0 - Term 13247 - 13286 6.2 17 4 Tu 1 . - CDS 13290 - 13937 860 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Prom 14073 - 14132 3.8 + Prom 14032 - 14091 3.2 18 5 Tu 1 . + CDS 14257 - 16848 1676 ## COG3468 Type V secretory pathway, adhesin AidA + Term 16863 - 16898 4.2 - TRNA 16951 - 17027 78.0 # Pro GGG 0 0 - Term 16899 - 16940 4.0 19 6 Op 1 8/0.029 - CDS 17102 - 18862 1690 ## COG3083 Predicted hydrolase of alkaline phosphatase superfamily 20 6 Op 2 . - CDS 18882 - 19109 303 ## COG3082 Uncharacterized protein conserved in bacteria - Prom 19181 - 19240 4.6 + Prom 19166 - 19225 6.9 21 7 Tu 1 . + CDS 19291 - 20298 1290 ## COG3081 Nucleoid-associated protein + Term 20388 - 20436 4.6 - Term 20371 - 20425 6.4 22 8 Op 1 . - CDS 20437 - 20817 633 ## PROTEIN SUPPORTED gi|26108973|gb|AAN81176.1|AE016763_135 50S ribosomal protein L25 23 8 Op 2 . - CDS 20846 - 22606 1718 ## COG1061 DNA or RNA helicases of superfamily II 24 8 Op 3 . - CDS 22632 - 22889 80 ## gi|466200|sp|P28247|BICB_ECOLI RecName: Full=Putative uncharacterized protein BicB gi|405943|gb|AAA16407.1| bicB/yeiD - Prom 23001 - 23060 1.7 + Prom 22635 - 22694 3.5 25 9 Op 1 8/0.029 + CDS 22755 - 23450 799 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 26 9 Op 2 . + CDS 23478 - 24668 1210 ## COG0477 Permeases of the major facilitator superfamily + Term 24684 - 24713 0.5 + Prom 24713 - 24772 5.2 27 10 Tu 1 . + CDS 25001 - 25345 228 ## EC55989_2435 hypothetical protein + Term 25381 - 25428 3.6 28 11 Op 1 11/0.029 - CDS 25349 - 26938 332 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 29 11 Op 2 11/0.029 - CDS 26940 - 27965 1089 ## COG4239 ABC-type uncharacterized transport system, permease component 30 11 Op 3 11/0.029 - CDS 27965 - 29059 1383 ## COG4174 ABC-type uncharacterized transport system, permease component 31 11 Op 4 2/0.647 - CDS 29060 - 30874 1540 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 32 11 Op 5 5/0.118 - CDS 30956 - 32512 1167 ## COG2200 FOG: EAL domain - Prom 32543 - 32602 4.1 - Term 32610 - 32647 6.4 33 12 Tu 1 . - CDS 32693 - 33259 358 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 - Prom 33318 - 33377 5.5 34 13 Op 1 3/0.471 - CDS 33671 - 34384 491 ## COG0671 Membrane-associated phospholipid phosphatase 35 13 Op 2 3/0.471 - CDS 34423 - 35409 668 ## COG0523 Putative GTPases (G3E family) - Term 35465 - 35516 2.2 36 14 Tu 1 . - CDS 35527 - 36993 1194 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Prom 37024 - 37083 6.3 - Term 37156 - 37204 5.0 37 15 Tu 1 . - CDS 37216 - 37788 775 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Prom 37718 - 37777 3.4 38 16 Tu 1 . + CDS 37943 - 38197 181 ## COG0727 Predicted Fe-S-cluster oxidoreductase 39 17 Tu 1 . - CDS 38194 - 39375 1040 ## COG0477 Permeases of the major facilitator superfamily - Prom 39524 - 39583 3.7 + Prom 39583 - 39642 3.5 40 18 Op 1 11/0.029 + CDS 39743 - 40873 1436 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 41 18 Op 2 19/0.000 + CDS 40873 - 41811 1009 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 42 18 Op 3 4/0.324 + CDS 41828 - 43519 1998 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 43529 - 43573 11.0 + Prom 43697 - 43756 4.2 43 19 Op 1 8/0.029 + CDS 43942 - 44883 589 ## COG0524 Sugar kinases, ribokinase family 44 19 Op 2 4/0.324 + CDS 44871 - 45809 1113 ## COG2313 Uncharacterized enzyme involved in pigment biosynthesis 45 19 Op 3 . + CDS 45903 - 47153 1542 ## COG1972 Nucleoside permease 46 20 Tu 1 . - CDS 47224 - 47922 539 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 48150 - 48209 6.1 + Prom 47927 - 47986 3.5 47 21 Op 1 3/0.471 + CDS 48052 - 48993 1084 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 49007 - 49050 7.5 48 21 Op 2 . + CDS 49093 - 50343 1355 ## COG1972 Nucleoside permease 49 22 Op 1 3/0.471 - CDS 50450 - 51538 740 ## COG0524 Sugar kinases, ribokinase family 50 22 Op 2 5/0.118 - CDS 51541 - 52398 868 ## COG0648 Endonuclease IV 51 22 Op 3 . - CDS 52472 - 53521 1236 ## COG2855 Predicted membrane protein - Prom 53572 - 53631 9.8 + Prom 53541 - 53600 9.1 52 23 Op 1 . + CDS 53620 - 54501 204 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 + Prom 54619 - 54678 5.3 53 23 Op 2 . + CDS 54706 - 56175 1922 ## COG0833 Amino acid transporters + Term 56197 - 56228 4.1 + Prom 56207 - 56266 7.1 54 24 Tu 1 . + CDS 56469 - 58460 2074 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins + Term 58469 - 58499 2.1 - Term 58458 - 58485 1.5 55 25 Tu 1 . - CDS 58492 - 59328 782 ## COG0627 Predicted esterase - Prom 59572 - 59631 3.0 + Prom 59410 - 59469 4.7 56 26 Op 1 4/0.324 + CDS 59586 - 60254 728 ## COG0302 GTP cyclohydrolase I 57 26 Op 2 . + CDS 60271 - 61428 1165 ## COG2311 Predicted membrane protein 58 27 Tu 1 . - CDS 61377 - 61580 105 ## ECIAI1_2229 hypothetical protein + Prom 61468 - 61527 1.9 59 28 Tu 1 . + CDS 61570 - 62610 1001 ## COG1609 Transcriptional regulators + Term 62622 - 62651 -0.2 + Prom 62656 - 62715 5.2 60 29 Op 1 16/0.000 + CDS 62890 - 63888 1382 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 63897 - 63932 6.1 61 29 Op 2 10/0.029 + CDS 63949 - 65469 1586 ## COG1129 ABC-type sugar transport system, ATPase component 62 29 Op 3 . + CDS 65485 - 66495 1443 ## COG4211 ABC-type glucose/galactose transport system, permease component + Term 66695 - 66740 0.3 - Term 66591 - 66634 3.9 63 30 Op 1 4/0.324 - CDS 66738 - 67973 1310 ## COG0167 Dihydroorotate dehydrogenase 64 30 Op 2 . - CDS 67967 - 69205 939 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - Prom 69338 - 69397 5.1 - Term 69306 - 69347 1.2 65 31 Op 1 . - CDS 69399 - 69638 236 ## G2583_2688 hypothetical protein 66 31 Op 2 3/0.471 - CDS 69641 - 70360 893 ## COG2949 Uncharacterized membrane protein - Prom 70391 - 70450 3.7 - Term 70414 - 70442 1.6 67 32 Tu 1 . - CDS 70510 - 71394 882 ## COG0295 Cytidine deaminase - Prom 71420 - 71479 4.5 68 33 Op 1 23/0.000 - CDS 71524 - 72219 758 ## COG1346 Putative effector of murein hydrolase 69 33 Op 2 . - CDS 72216 - 72614 394 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 72635 - 72694 3.9 + Prom 72772 - 72831 5.0 70 34 Tu 1 . + CDS 72853 - 73800 986 ## COG0042 tRNA-dihydrouridine synthase 71 35 Tu 1 . - CDS 74173 - 74256 65 ## - Prom 74280 - 74339 6.2 + Prom 74284 - 74343 5.8 72 36 Op 1 2/0.647 + CDS 74480 - 75916 1205 ## COG1538 Outer membrane protein 73 36 Op 2 . + CDS 75969 - 76730 204 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Term 76771 - 76797 -1.0 74 37 Tu 1 . - CDS 76860 - 77438 646 ## COG0586 Uncharacterized membrane-associated protein - Prom 77539 - 77598 5.2 + Prom 77516 - 77575 3.1 75 38 Tu 1 . + CDS 77608 - 78195 634 ## APECO1_4414 hypothetical protein + Term 78209 - 78254 11.2 + Prom 78239 - 78298 5.1 76 39 Tu 1 . + CDS 78408 - 79301 1074 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 79309 - 79345 4.3 - Term 79245 - 79273 1.3 77 40 Tu 1 . - CDS 79339 - 81054 1625 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 81087 - 81146 6.1 + Prom 81045 - 81104 5.9 78 41 Tu 1 . + CDS 81250 - 83547 2869 ## COG1472 Beta-glucosidase-related glycosidases + Term 83552 - 83598 4.2 + Prom 83552 - 83611 5.0 79 42 Op 1 13/0.029 + CDS 83799 - 84716 1082 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 80 42 Op 2 24/0.000 + CDS 84723 - 85880 1293 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 81 42 Op 3 24/0.000 + CDS 85873 - 86799 1161 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 82 42 Op 4 . + CDS 86804 - 87535 887 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 87784 - 87823 1.2 - Term 87337 - 87376 -0.7 83 43 Op 1 . - CDS 87516 - 87623 187 ## 84 43 Op 2 . - CDS 87683 - 88414 650 ## COG0789 Predicted transcriptional regulators - Prom 88501 - 88560 4.4 + Prom 88465 - 88524 3.5 85 44 Op 1 9/0.029 + CDS 88735 - 90321 1272 ## COG3275 Putative regulator of cell autolysis 86 44 Op 2 2/0.647 + CDS 90318 - 91037 897 ## COG3279 Response regulator of the LytR/AlgR family 87 44 Op 3 . + CDS 91084 - 91554 448 ## COG4807 Uncharacterized protein conserved in bacteria + Term 91560 - 91605 9.2 - Term 91349 - 91393 4.0 88 45 Tu 1 . - CDS 91595 - 92056 542 ## COG4808 Uncharacterized protein conserved in bacteria - Prom 92114 - 92173 1.7 - Term 92072 - 92102 2.0 89 46 Op 1 . - CDS 92181 - 94184 1123 ## COG2801 Transposase and inactivated derivatives 90 46 Op 2 . - CDS 94181 - 95317 883 ## JW5350 conserved hypothetical protein 91 46 Op 3 . - CDS 95310 - 97589 1635 ## EcolC_1528 hypothetical protein 92 46 Op 4 . - CDS 97600 - 98688 1003 ## COG0714 MoxR-like ATPases - Prom 98763 - 98822 7.7 - Term 98787 - 98831 7.7 93 47 Op 1 . - CDS 98995 - 99312 108 ## EcolC_1530 hypothetical protein - Term 99332 - 99365 3.7 94 47 Op 2 . - CDS 99373 - 103005 2644 ## EcolC_1531 putative regulator 95 47 Op 3 1/0.882 - CDS 103015 - 106809 2070 ## COG3831 Uncharacterized conserved protein - Prom 106889 - 106948 3.0 - Term 106907 - 106938 2.4 96 48 Tu 1 . - CDS 106950 - 108983 2358 ## COG0143 Methionyl-tRNA synthetase - Prom 109013 - 109072 4.4 + Prom 109028 - 109087 2.7 97 49 Op 1 . + CDS 109115 - 110224 1138 ## COG0489 ATPases involved in chromosome partitioning + Term 110263 - 110326 10.0 + Prom 110345 - 110404 2.8 98 49 Op 2 . + CDS 110487 - 110768 162 ## JW2099 hypothetical protein + Term 110795 - 110849 15.2 + Prom 110922 - 110981 7.1 99 50 Op 1 7/0.059 + CDS 111061 - 111603 450 ## COG3539 P pilus assembly protein, pilin FimA + Term 111640 - 111674 5.1 100 50 Op 2 10/0.029 + CDS 111683 - 112357 410 ## COG3121 P pilus assembly protein, chaperone PapD 101 50 Op 3 . + CDS 112373 - 114853 1695 ## COG3188 P pilus assembly protein, porin PapC + Prom 114888 - 114947 4.7 102 51 Tu 1 . + CDS 115064 - 115903 355 ## ECUMN_2440 putative exported fimbrial-like adhesin protein + Term 115959 - 115991 3.0 103 52 Tu 1 . - CDS 115985 - 116323 316 ## COG5455 Predicted integral membrane protein - Prom 116371 - 116430 3.6 - Term 116429 - 116459 1.1 104 53 Tu 1 . - CDS 116542 - 117366 601 ## COG2215 ABC-type uncharacterized transport system, permease component - Prom 117393 - 117452 3.9 + Prom 117404 - 117463 5.0 105 54 Tu 1 . + CDS 117487 - 117759 401 ## COG1937 Uncharacterized protein conserved in bacteria + Prom 117773 - 117832 3.0 106 55 Op 1 12/0.029 + CDS 118063 - 118770 452 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 107 55 Op 2 2/0.647 + CDS 118767 - 119567 654 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 108 55 Op 3 2/0.647 + CDS 119632 - 120450 601 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 109 55 Op 4 . + CDS 120502 - 121248 555 ## COG2188 Transcriptional regulators - Term 121129 - 121185 11.1 110 56 Op 1 5/0.118 - CDS 121222 - 122187 879 ## COG0524 Sugar kinases, ribokinase family 111 56 Op 2 4/0.324 - CDS 122184 - 123188 956 ## COG1397 ADP-ribosylglycohydrolase 112 56 Op 3 . - CDS 123185 - 124462 1429 ## COG0477 Permeases of the major facilitator superfamily - Prom 124510 - 124569 3.7 + Prom 124513 - 124572 4.4 113 57 Tu 1 . + CDS 124719 - 125771 1172 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes + Term 125856 - 125889 5.2 + Prom 125860 - 125919 3.8 114 58 Op 1 . + CDS 125999 - 126853 698 ## COG0191 Fructose/tagatose bisphosphate aldolase 115 58 Op 2 4/0.324 + CDS 126882 - 128144 959 ## COG4573 Predicted tagatose 6-phosphate kinase 116 58 Op 3 13/0.029 + CDS 128154 - 128606 259 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 117 58 Op 4 10/0.029 + CDS 128637 - 128921 335 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 118 58 Op 5 7/0.059 + CDS 128925 - 130280 1718 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 119 58 Op 6 3/0.471 + CDS 130328 - 131368 718 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 131374 - 131408 7.4 + Prom 131393 - 131452 3.0 120 59 Tu 1 . + CDS 131474 - 132247 514 ## COG1349 Transcriptional regulators of sugar metabolism 121 60 Tu 1 . - CDS 132329 - 133228 633 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 133255 - 133314 3.3 + Prom 133543 - 133602 7.7 122 61 Tu 1 . + CDS 133685 - 133960 195 ## ECSE_2357 hypothetical protein - Term 134114 - 134153 5.1 123 62 Tu 1 . - CDS 134290 - 135651 1663 ## COG0826 Collagenase and related proteases - Prom 135726 - 135785 5.1 124 63 Tu 1 . - CDS 135799 - 136131 373 ## COG3422 Uncharacterized conserved protein 125 64 Op 1 40/0.000 - CDS 136311 - 137033 831 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 126 64 Op 2 10/0.029 - CDS 137030 - 138433 1310 ## COG0642 Signal transduction histidine kinase 127 64 Op 3 5/0.118 - CDS 138430 - 139845 1345 ## COG0477 Permeases of the major facilitator superfamily 128 64 Op 4 10/0.029 - CDS 139846 - 142923 3222 ## COG0841 Cation/multidrug efflux pump 129 64 Op 5 27/0.000 - CDS 142924 - 146046 3423 ## COG0841 Cation/multidrug efflux pump 130 64 Op 6 . - CDS 146046 - 147293 1301 ## COG0845 Membrane-fusion protein - Prom 147365 - 147424 3.4 + Prom 148748 - 148807 3.3 131 65 Op 1 . + CDS 148837 - 149496 571 ## COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 132 65 Op 2 . + CDS 149574 - 150254 539 ## ECUMN_2410 hypothetical protein - Term 150247 - 150293 6.8 133 66 Tu 1 . - CDS 150319 - 150762 419 ## COG3779 Uncharacterized protein conserved in bacteria - Prom 150850 - 150909 6.7 + Prom 150880 - 150939 6.6 134 67 Tu 1 . + CDS 150981 - 152927 1196 ## COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains + Term 153151 - 153188 -0.3 135 68 Tu 1 . - CDS 152940 - 154292 1591 ## COG0443 Molecular chaperone - Prom 154320 - 154379 4.1 136 69 Tu 1 . + CDS 154426 - 155283 776 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 137 70 Tu 1 . - CDS 155321 - 158638 2794 ## COG2202 FOG: PAS/PAC domain - Prom 158700 - 158759 4.6 138 71 Op 1 4/0.324 + CDS 158956 - 159597 609 ## COG0572 Uridine kinase 139 71 Op 2 4/0.324 + CDS 159689 - 160270 682 ## COG0717 Deoxycytidine deaminase 140 71 Op 3 . + CDS 160292 - 162145 1393 ## COG2982 Uncharacterized protein involved in outer membrane biogenesis 141 72 Tu 1 . - CDS 162597 - 164180 1912 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 164282 - 164341 5.0 + Prom 164695 - 164754 6.0 142 73 Op 1 6/0.059 + CDS 164923 - 165978 1074 ## COG1596 Periplasmic protein involved in polysaccharide export 143 73 Op 2 3/0.471 + CDS 165984 - 166427 470 ## COG0394 Protein-tyrosine-phosphatase 144 73 Op 3 2/0.647 + CDS 166430 - 168592 2516 ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis 145 74 Op 1 4/0.324 + CDS 168721 - 169560 722 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 146 74 Op 2 5/0.118 + CDS 169563 - 170051 503 ## COG1045 Serine acetyltransferase 147 74 Op 3 . + CDS 170048 - 171265 1149 ## COG0438 Glycosyltransferase 148 74 Op 4 . + CDS 171240 - 172457 883 ## B21_01951 hypothetical protein 149 74 Op 5 7/0.059 + CDS 172468 - 173214 649 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 150 74 Op 6 5/0.118 + CDS 173230 - 173778 341 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 151 74 Op 7 14/0.000 + CDS 173805 - 174926 1355 ## COG1089 GDP-D-mannose dehydratase 152 74 Op 8 . + CDS 174929 - 175385 474 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|223713594|gb|ACDM01000004.1| GENE 1 44 - 532 523 162 aa, chain - ## HITS:1 COG:eco KEGG:ns NR:ns ## COG: eco COG4574 # Protein_GI_number: 16130146 # Func_class: R General function prediction only # Function: Serine protease inhibitor ecotin # Organism: Escherichia coli K12 # 1 162 1 162 162 322 100.0 2e-88 MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVEL LIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFDKVSSPVSTMMACPDGKKEKKFVTAY LGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAVVR >gi|223713594|gb|ACDM01000004.1| GENE 2 667 - 831 66 54 aa, chain - ## HITS:1 COG:no KEGG:BWG_1982 NR:ns ## KEGG: BWG_1982 # Name: yojO # Def: hypothetical protein # Organism: E.coli_BW2952 # Pathway: not_defined # 1 54 1 54 54 107 100.0 9e-23 MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKYIYIAIDSPEIFLLVCSLIRI >gi|223713594|gb|ACDM01000004.1| GENE 3 1424 - 1687 332 87 aa, chain + ## HITS:1 COG:ECs3096 KEGG:ns NR:ns ## COG: ECs3096 COG3062 # Protein_GI_number: 15832350 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in formation of periplasmic nitrate reductase # Organism: Escherichia coli O157:H7 # 1 87 1 87 87 139 100.0 2e-33 MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTI ESVRNVEGVLAVSLVYHQQEEQGEETP >gi|223713594|gb|ACDM01000004.1| GENE 4 1684 - 4170 3236 828 aa, chain + ## HITS:1 COG:napA KEGG:ns NR:ns ## COG: napA COG0243 # Protein_GI_number: 16130143 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 828 1 828 828 1724 100.0 0 MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKAPCRFCGTGCGVLVGTQ QGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITW DQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCM ASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVA VLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIG YGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYA DPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREV GTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMC TNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAER RTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPE VSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPV VNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGR VLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETR GRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEKV >gi|223713594|gb|ACDM01000004.1| GENE 5 4177 - 4872 477 231 aa, chain + ## HITS:1 COG:napG KEGG:ns NR:ns ## COG: napG COG1145 # Protein_GI_number: 16130142 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1 231 1 231 231 449 100.0 1e-126 MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGVRLRPPGAINENAFASA CVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCAKVCPSGALDREI ESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEAITLELERNTRTGKHARFLPT VHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHHYRFGWLEGNNGKS >gi|223713594|gb|ACDM01000004.1| GENE 6 4859 - 5722 669 287 aa, chain + ## HITS:1 COG:napH KEGG:ns NR:ns ## COG: napH COG0348 # Protein_GI_number: 16130141 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Escherichia coli K12 # 1 287 1 287 287 549 100.0 1e-156 MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLF DTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANW LRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALL ILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPH VLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS >gi|223713594|gb|ACDM01000004.1| GENE 7 5698 - 6168 497 156 aa, chain + ## HITS:1 COG:ECs3092 KEGG:ns NR:ns ## COG: ECs3092 COG3043 # Protein_GI_number: 15832346 # Func_class: C Energy production and conversion # Function: Nitrate reductase cytochrome c-type subunit # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 320 100.0 7e-88 MEFGSEIMKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQ DRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVG AEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK >gi|223713594|gb|ACDM01000004.1| GENE 8 6178 - 6780 562 200 aa, chain + ## HITS:1 COG:ECs3091 KEGG:ns NR:ns ## COG: ECs3091 COG3005 # Protein_GI_number: 15832345 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 1 200 1 200 200 429 100.0 1e-120 MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGFNTGMEKANTEEFCISC HEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIRKLKASKELYGKIFGVIDT PQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTAQKSVAAKMHDQAVKDGQTCI DCHKGIAHKLPDMREVEPGF >gi|223713594|gb|ACDM01000004.1| GENE 9 6793 - 7416 536 207 aa, chain + ## HITS:1 COG:ccmA KEGG:ns NR:ns ## COG: ccmA COG4133 # Protein_GI_number: 16130138 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, ATPase component # Organism: Escherichia coli K12 # 3 207 1 205 205 375 100.0 1e-104 MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEV LWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAG FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI VILTTHQPLNVAESKIRRISLTQTRAA >gi|223713594|gb|ACDM01000004.1| GENE 10 7416 - 8075 774 219 aa, chain + ## HITS:1 COG:ECs3089 KEGG:ns NR:ns ## COG: ECs3089 COG2386 # Protein_GI_number: 15832343 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 219 2 220 220 280 100.0 2e-75 MFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLS SLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGM DVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMD AASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ >gi|223713594|gb|ACDM01000004.1| GENE 11 8117 - 8854 744 245 aa, chain + ## HITS:1 COG:ECs3088 KEGG:ns NR:ns ## COG: ECs3088 COG0755 # Protein_GI_number: 15832342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 417 100.0 1e-116 MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFAPADYQQGNSYRIIYLH VPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAVFTFIALVTGSAWGKPMWG TWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWW NTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTLMRMRNLILLMEKRRPWVSELIL KRGRK >gi|223713594|gb|ACDM01000004.1| GENE 12 8851 - 9060 277 69 aa, chain + ## HITS:1 COG:ECs3087 KEGG:ns NR:ns ## COG: ECs3087 COG3114 # Protein_GI_number: 15832341 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Heme exporter protein D # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 90 100.0 7e-19 MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQRAREARL RAAQQQEAA >gi|223713594|gb|ACDM01000004.1| GENE 13 9057 - 9536 683 159 aa, chain + ## HITS:1 COG:ECs3086 KEGG:ns NR:ns ## COG: ECs3086 COG2332 # Protein_GI_number: 15832340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c-type biogenesis protein CcmE # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 321 100.0 3e-88 MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRL RVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNH ILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS >gi|223713594|gb|ACDM01000004.1| GENE 14 9533 - 11476 2372 647 aa, chain + ## HITS:1 COG:ccmF KEGG:ns NR:ns ## COG: ccmF COG1138 # Protein_GI_number: 16130133 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1 647 1 647 647 1144 100.0 0 MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESLLLANNVLLV AAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR KIRNLLIIAFISTLVLSLLLPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW AVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRKRVSPQKTAPEAV >gi|223713594|gb|ACDM01000004.1| GENE 15 11473 - 12030 674 185 aa, chain + ## HITS:1 COG:ECs3084 KEGG:ns NR:ns ## COG: ECs3084 COG0526 # Protein_GI_number: 15832338 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 185 1 185 185 378 100.0 1e-105 MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFY QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELG NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS KEAAQ >gi|223713594|gb|ACDM01000004.1| GENE 16 12027 - 13079 1226 350 aa, chain + ## HITS:1 COG:ccmH_2 KEGG:ns NR:ns ## COG: ccmH_2 COG4235 # Protein_GI_number: 16130131 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 130 350 1 221 221 430 100.0 1e-120 MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIAT DLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVVAIGIGGWVIY ARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIVAGVSYYQTGNYQQVKIWQQA TAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALGNASI ATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYA FNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLSPQESK >gi|223713594|gb|ACDM01000004.1| GENE 17 13290 - 13937 860 215 aa, chain - ## HITS:1 COG:ECs3082 KEGG:ns NR:ns ## COG: ECs3082 COG2197 # Protein_GI_number: 15832336 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 215 1 215 215 385 99.0 1e-107 MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDL NMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAI RAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNI SEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ >gi|223713594|gb|ACDM01000004.1| GENE 18 14257 - 16848 1676 863 aa, chain + ## HITS:1 COG:yejO KEGG:ns NR:ns ## COG: yejO COG3468 # Protein_GI_number: 16130127 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 28 863 1 836 836 1481 99.0 0 MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKIN PGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQ VYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAM EVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVD KKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHA TMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSV RGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADIT TTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMA NHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTY EYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDT AMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDR GGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAH VESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDL QNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLS VSYGNGAGVESPWNTQAGVVWTF >gi|223713594|gb|ACDM01000004.1| GENE 19 17102 - 18862 1690 586 aa, chain - ## HITS:1 COG:ECs3080 KEGG:ns NR:ns ## COG: ECs3080 COG3083 # Protein_GI_number: 15832334 # Func_class: R General function prediction only # Function: Predicted hydrolase of alkaline phosphatase superfamily # Organism: Escherichia coli O157:H7 # 1 586 1 586 586 1172 100.0 0 MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGH FSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVW QLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIA FIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD AVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGN TTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLS DFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAA GNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGT PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITT PKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN >gi|223713594|gb|ACDM01000004.1| GENE 20 18882 - 19109 303 75 aa, chain - ## HITS:1 COG:ECs3079 KEGG:ns NR:ns ## COG: ECs3079 COG3082 # Protein_GI_number: 15832333 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 75 1 75 75 120 100.0 8e-28 MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANS FARALQSSINEDKAH >gi|223713594|gb|ACDM01000004.1| GENE 21 19291 - 20298 1290 335 aa, chain + ## HITS:1 COG:yejK KEGG:ns NR:ns ## COG: yejK COG3081 # Protein_GI_number: 16130124 # Func_class: R General function prediction only # Function: Nucleoid-associated protein # Organism: Escherichia coli K12 # 1 335 1 335 335 643 100.0 0 MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEE SELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAV LSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVAD FFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEI ELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAML LGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN >gi|223713594|gb|ACDM01000004.1| GENE 22 20437 - 20817 633 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|26108973|gb|AAN81176.1|AE016763_135 50S ribosomal protein L25 [Escherichia coli CFT073] # 1 126 1 126 126 248 96 1e-64 MSIESRPLLHTQSRSLTCCWVACSRINLREKEMFTINAEVRKEQGKGASRRLRAANKFPA IIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQH IDFVRA >gi|223713594|gb|ACDM01000004.1| GENE 23 20846 - 22606 1718 586 aa, chain - ## HITS:1 COG:yejH_1 KEGG:ns NR:ns ## COG: yejH_1 COG1061 # Protein_GI_number: 16130122 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Escherichia coli K12 # 1 358 1 358 358 730 99.0 0 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH IISQIMEFAAMRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG >gi|223713594|gb|ACDM01000004.1| GENE 24 22632 - 22889 80 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|466200|sp|P28247|BICB_ECOLI ## NR: gi|466200|sp|P28247|BICB_ECOLI RecName: Full=Putative uncharacterized protein BicB # 1 85 83 167 167 182 100.0 5e-45 MFRKQFERCITDDFAIDGDTIAADFTPGNSTANAELLCDKFIKSHVCDFACKNGGRALTR KSELLSAQYSGLITSLKGKRSMAYY >gi|223713594|gb|ACDM01000004.1| GENE 25 22755 - 23450 799 231 aa, chain + ## HITS:1 COG:ECs3075 KEGG:ns NR:ns ## COG: ECs3075 COG1187 # Protein_GI_number: 15832329 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli O157:H7 # 1 231 1 231 231 469 100.0 1e-132 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV >gi|223713594|gb|ACDM01000004.1| GENE 26 23478 - 24668 1210 396 aa, chain + ## HITS:1 COG:ECs3074 KEGG:ns NR:ns ## COG: ECs3074 COG0477 # Protein_GI_number: 15832328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 396 1 396 396 652 99.0 0 MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFAL GQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVIN ALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAM IFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVY IEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISA LLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGAL LSLATFNSAWPMIWSIAFCATSSILFCLYASRPKKR >gi|223713594|gb|ACDM01000004.1| GENE 27 25001 - 25345 228 114 aa, chain + ## HITS:1 COG:no KEGG:EC55989_2435 NR:ns ## KEGG: EC55989_2435 # Name: yejG # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 114 1 114 114 233 100.0 2e-60 MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVALKLLSPDGDNAWSVMYK LSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNYNPF >gi|223713594|gb|ACDM01000004.1| GENE 28 25349 - 26938 332 529 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 268 528 1 261 563 132 32 1e-29 MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP SPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA DEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNY AATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNV VVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPI RHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRH RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYL FISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQEYTRQLLALS >gi|223713594|gb|ACDM01000004.1| GENE 29 26940 - 27965 1089 341 aa, chain - ## HITS:1 COG:ECs3071 KEGG:ns NR:ns ## COG: ECs3071 COG4239 # Protein_GI_number: 15832325 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 341 1 341 341 649 99.0 0 MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLL KNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGATSINFATDKPFPSPPSRQ NWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFI EVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQA LGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQG KNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPNKAV >gi|223713594|gb|ACDM01000004.1| GENE 30 27965 - 29059 1383 364 aa, chain - ## HITS:1 COG:ECs3070 KEGG:ns NR:ns ## COG: ECs3070 COG4174 # Protein_GI_number: 15832324 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 364 1 364 364 685 100.0 0 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRA SHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLF RSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAI PAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFT GSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRID FEGR >gi|223713594|gb|ACDM01000004.1| GENE 31 29060 - 30874 1540 604 aa, chain - ## HITS:1 COG:yejA KEGG:ns NR:ns ## COG: yejA COG4166 # Protein_GI_number: 16130115 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 604 3 606 606 1195 100.0 0 MIVRILLLFIALFTFGVQAQAIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSA LGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAIN PRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTVKAIAPLTVRIELAKPGKEDM LSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSWKMGQNIVYSRVKDYWAANLPVN RGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMENDAKNWATRYTGKNFDKKYIIKDEQK NESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAA RNYPDAAELVLLAPMKKDLPSEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQ QRVNATTGQPLSFELLLPASSNSQWVLPFQHSLQRLGINMDIRKVDNSQITNRMRSRDYD MMPRVWRAMPWPSSDLQISWSSEYINSTYNAPGVQSPVIDSLINQIIAAQGNKEKLLPLG RALDRVLTWNYYMLPMWYMAEDRLAWWDKFSQPAVRPIYSLGIDTWWYDVNKAAKLPSAS KQGE >gi|223713594|gb|ACDM01000004.1| GENE 32 30956 - 32512 1167 518 aa, chain - ## HITS:1 COG:rtn_2 KEGG:ns NR:ns ## COG: rtn_2 COG2200 # Protein_GI_number: 16130114 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 261 518 1 258 258 531 100.0 1e-150 MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFAD LKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNEL IPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQE DYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF LLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLR WRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDH LHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGT GHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQ ARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW >gi|223713594|gb|ACDM01000004.1| GENE 33 32693 - 33259 358 188 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 65 184 58 174 175 142 57 1e-32 MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVGSETSSLQASQDEFENL VRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEM GKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRYNE ARRVLSRS >gi|223713594|gb|ACDM01000004.1| GENE 34 33671 - 34384 491 237 aa, chain - ## HITS:1 COG:ECs3066 KEGG:ns NR:ns ## COG: ECs3066 COG0671 # Protein_GI_number: 15832320 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli O157:H7 # 1 237 13 249 249 437 100.0 1e-123 MIKNLPQIVLLNIVGLALFLSWYIPVNHGFWLPIDADIFYFFNQKLVESKAFLWLVALTN NRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTAVVLNQLGQALIPVKRASP TLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAFMWRYFGKVAGLIALIIFVVF AFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDRLITFFDKSLPGKNKHFQNK >gi|223713594|gb|ACDM01000004.1| GENE 35 34423 - 35409 668 328 aa, chain - ## HITS:1 COG:yeiR KEGG:ns NR:ns ## COG: yeiR COG0523 # Protein_GI_number: 16130111 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Escherichia coli K12 # 1 328 1 328 328 658 100.0 0 MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIP GGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATL CILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIH SEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQA CGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDS RIELISSSEADWNALQSALLKLRLATTA >gi|223713594|gb|ACDM01000004.1| GENE 36 35527 - 36993 1194 488 aa, chain - ## HITS:1 COG:yeiQ KEGG:ns NR:ns ## COG: yeiQ COG0246 # Protein_GI_number: 16130110 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1 488 1 488 488 1012 100.0 0 MNTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEI SLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQV AIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHSAPGILVEALKRRRERGLTPF TVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLVEI SQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHS FLAYLGYLSGFAHISDCMQDRAFRHAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANP ALKHKTWQIAMDGSQKLPQRMLAGIRIHQGRETDWSLLALGVAGWMRYVSGVDDAGNAID VRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ ALLNTLKI >gi|223713594|gb|ACDM01000004.1| GENE 37 37216 - 37788 775 190 aa, chain - ## HITS:1 COG:ECs3063 KEGG:ns NR:ns ## COG: ECs3063 COG0231 # Protein_GI_number: 15832317 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Escherichia coli O157:H7 # 1 190 86 275 275 384 100.0 1e-107 MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDD IVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTW DGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLSTGLVIQVPEYLSPGEKIRIHI EERRYMGRAD >gi|223713594|gb|ACDM01000004.1| GENE 38 37943 - 38197 181 84 aa, chain + ## HITS:1 COG:YPO1286 KEGG:ns NR:ns ## COG: YPO1286 COG0727 # Protein_GI_number: 16121569 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster oxidoreductase # Organism: Yersinia pestis # 1 84 1 84 84 101 66.0 3e-22 MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKIFTSPLRPKVCAGLQAS AEMCGNSRQQAMTWLIDLEMLTAP >gi|223713594|gb|ACDM01000004.1| GENE 39 38194 - 39375 1040 393 aa, chain - ## HITS:1 COG:ECs3062 KEGG:ns NR:ns ## COG: ECs3062 COG0477 # Protein_GI_number: 15832316 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 393 1 393 393 693 99.0 0 MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGS AVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA VAFIVCGVMVWLFLPSMQKELPLATGTIEAPRRNRRDTLLLFVICTLMWGSNSLYIINMP LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVGGVCFYAGML MAHSPVILLGLQLLNAIFIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSVA GIVAEIWNYHAVFWFAMVMIIATLFCLLRIKDV >gi|223713594|gb|ACDM01000004.1| GENE 40 39743 - 40873 1436 376 aa, chain + ## HITS:1 COG:fruB_1 KEGG:ns NR:ns ## COG: fruB_1 COG4668 # Protein_GI_number: 16130107 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Escherichia coli K12 # 1 286 1 286 286 471 100.0 1e-132 MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGMLAREQQTSTFLGNGIAI PHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAASSDEHLGLLRQLTHVLSDD SVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIVASDLLTLQALNAARLKEAGA VDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVSRAANAFDVDGETAAMLVSVAMN DDQPIAVLKRLADLLLDNKADRLLKADAATLLALLTSDDAPTDDVLSAEFVVRNEHGLHA RPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSLMKVVALGVKKGHRLRFTAQGADAEQA LKAIGDAIAAGLGEGA >gi|223713594|gb|ACDM01000004.1| GENE 41 40873 - 41811 1009 312 aa, chain + ## HITS:1 COG:ECs3060 KEGG:ns NR:ns ## COG: ECs3060 COG1105 # Protein_GI_number: 15832314 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Escherichia coli O157:H7 # 1 312 1 312 312 611 100.0 1e-175 MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGG FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWER FVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIA KPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLA AMMARVDLQPFN >gi|223713594|gb|ACDM01000004.1| GENE 42 41828 - 43519 1998 563 aa, chain + ## HITS:1 COG:fruA_3 KEGG:ns NR:ns ## COG: fruA_3 COG1299 # Protein_GI_number: 16130105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 226 563 1 338 338 545 100.0 1e-154 MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMAIVLGDSIPNDSALNGK NVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASGPKRVVAVTACPTGVAHTF MAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAADLVIVAADIEVDLAKFAGKPM YRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTESKKESAGAYRHLLTGVSYMLPM VVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLT PGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLISTQLKLPQSMEALKPILIIPLISSLVV GLAMIYLIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKAAYAFGVG LLSTQTYGPMAAIMAAGMVPPLAMGLATMVARRKFDKAQQEGGKAALVLGLCFISEGAIP FAARDPMRVLPCCIVGGALTGAISMAIGAKLMAPHGGLFVLLIPGAITPVLGYLVAIIAG TLVAGLAYAFLKRPEVDAVAKAA >gi|223713594|gb|ACDM01000004.1| GENE 43 43942 - 44883 589 313 aa, chain + ## HITS:1 COG:yeiC KEGG:ns NR:ns ## COG: yeiC COG0524 # Protein_GI_number: 16130104 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 313 1 313 313 618 100.0 1e-177 MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLL SAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAI TAEYLAQHGEFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCVKVRDRLNQ IHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGW SAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIA NVISLVENAECLN >gi|223713594|gb|ACDM01000004.1| GENE 44 44871 - 45809 1113 312 aa, chain + ## HITS:1 COG:ECs3057 KEGG:ns NR:ns ## COG: ECs3057 COG2313 # Protein_GI_number: 15832311 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme involved in pigment biosynthesis # Organism: Escherichia coli O157:H7 # 1 312 1 312 312 569 99.0 1e-162 MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGA VPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIA ALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLET FGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMAVKWQSGLNGGLVVANPIPEQ FAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILA SEIAKEYQRLAG >gi|223713594|gb|ACDM01000004.1| GENE 45 45903 - 47153 1542 416 aa, chain + ## HITS:1 COG:yeiM KEGG:ns NR:ns ## COG: yeiM COG1972 # Protein_GI_number: 16130102 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1 416 1 416 416 637 100.0 0 MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGGIMLYFPPGKWAVEQAA LGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVLPAIIFVTALISLLYYIGV MGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRMNRNELFTAICSG MASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFARILSPATEPSQVTFENLSFSETP PKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALINGIIGGIGGWFGFANASLESIFGY VLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVAYLSFSPYLQTGGTLEVKTIAIISFAL CGFANFGSIGVVVGAFSAISPKRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA >gi|223713594|gb|ACDM01000004.1| GENE 46 47224 - 47922 539 232 aa, chain - ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 14 232 1 219 219 446 100.0 1e-125 MKEIHNNDLKQQLMSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRA RLYATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLN DTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHTQAAEYLG VSYRHLLYVLAQFIHDGLLIKSKKGYLIKNRKQLSGLALEMDPENKFSGMMQ >gi|223713594|gb|ACDM01000004.1| GENE 47 48052 - 48993 1084 313 aa, chain + ## HITS:1 COG:yeiK KEGG:ns NR:ns ## COG: yeiK COG1957 # Protein_GI_number: 16130100 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1 313 1 313 313 632 100.0 0 MEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEIN VPVYAGMPQPIMRQQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDIT LVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTS GVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHD ATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWG LVEECVRGYIKTH >gi|223713594|gb|ACDM01000004.1| GENE 48 49093 - 50343 1355 416 aa, chain + ## HITS:1 COG:yeiJ KEGG:ns NR:ns ## COG: yeiJ COG1972 # Protein_GI_number: 16130099 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1 416 1 416 416 656 100.0 0 MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVA FGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGV MGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSG MASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETP PKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGY LLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFAL CGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA >gi|223713594|gb|ACDM01000004.1| GENE 49 50450 - 51538 740 362 aa, chain - ## HITS:1 COG:yeiI_2 KEGG:ns NR:ns ## COG: yeiI_2 COG0524 # Protein_GI_number: 16130098 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 54 362 1 309 309 633 99.0 0 MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYC VVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDF YGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQTVLAINDTHLLEQLTPQLLNG SRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDTVSEFKAGKIKHWLVHIHTLKPT LPELEILWGQAITSDADRNTAVNALHQQGVQQLFVYLPDESVYCSEKDGEQFLLTAPAHT TVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVACAAISRASGSLNNPTLSADNALSLVP MV >gi|223713594|gb|ACDM01000004.1| GENE 50 51541 - 52398 868 285 aa, chain - ## HITS:1 COG:ECs3051 KEGG:ns NR:ns ## COG: ECs3051 COG0648 # Protein_GI_number: 15832305 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Escherichia coli O157:H7 # 1 285 1 285 285 582 100.0 1e-166 MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYH YTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEE DCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT CHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIG HDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQTEKAVA >gi|223713594|gb|ACDM01000004.1| GENE 51 52472 - 53521 1236 349 aa, chain - ## HITS:1 COG:ECs3050 KEGG:ns NR:ns ## COG: ECs3050 COG2855 # Protein_GI_number: 15832304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 349 1 349 349 573 100.0 1e-163 MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNT IYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLAC FLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFL YPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPF LILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLA MAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA >gi|223713594|gb|ACDM01000004.1| GENE 52 53620 - 54501 204 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3 241 1 243 305 83 26 7e-15 MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN EHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPI ELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARGPVTL EQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRR VIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR >gi|223713594|gb|ACDM01000004.1| GENE 53 54706 - 56175 1922 489 aa, chain + ## HITS:1 COG:lysP KEGG:ns NR:ns ## COG: lysP COG0833 # Protein_GI_number: 16130094 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 489 1 489 489 911 100.0 0 MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGL MVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLV MSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIG IFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR AVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVM NAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCF LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLG PIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSE MKFPQNDKK >gi|223713594|gb|ACDM01000004.1| GENE 54 56469 - 58460 2074 663 aa, chain + ## HITS:1 COG:cirA KEGG:ns NR:ns ## COG: cirA COG4771 # Protein_GI_number: 16130093 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli K12 # 1 663 1 663 663 1315 100.0 0 MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQ RKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILVDGKRVNSRNAVFRHNDF DLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHRDR GDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVE FAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVE NKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEWRHDKLSDAVNLTGGTSSKTSAS QYALFVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKA PSLLQLSPDWTSNSCRGACKIVGSPDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRN DVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVNKARIQGVETELKIPFN DEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKR ADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVD YRF >gi|223713594|gb|ACDM01000004.1| GENE 55 58492 - 59328 782 278 aa, chain - ## HITS:1 COG:yeiG KEGG:ns NR:ns ## COG: yeiG COG0627 # Protein_GI_number: 16130092 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1 278 1 278 278 556 100.0 1e-158 MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPPVLYWLSGLTCNDENFT TKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGFYLNATQPPWATHYRMYDY LRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWG IKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLIDQGDNDQFLADQLQPAVLAEAAR QKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK >gi|223713594|gb|ACDM01000004.1| GENE 56 59586 - 60254 728 222 aa, chain + ## HITS:1 COG:ECs3045 KEGG:ns NR:ns ## COG: ECs3045 COG0302 # Protein_GI_number: 15832299 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 412 100.0 1e-115 MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSL METPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDG KATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH YCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN >gi|223713594|gb|ACDM01000004.1| GENE 57 60271 - 61428 1165 385 aa, chain + ## HITS:1 COG:Z3408 KEGG:ns NR:ns ## COG: Z3408 COG2311 # Protein_GI_number: 15802708 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 EDL933 # 1 385 44 428 428 665 98.0 0 MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVK FLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWR LVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGV EAISYRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAI GVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLA IACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFR QGPVEWLWRQLTLRAAGPAISKTSR >gi|223713594|gb|ACDM01000004.1| GENE 58 61377 - 61580 105 67 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_2229 NR:ns ## KEGG: ECIAI1_2229 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 67 1 67 67 130 100.0 1e-29 MVIIFTTCYEIAVNDCLLAAILSALNTGLRESSHSNGNGYSRFVNECDPDRYLDVLDIAG PAARKVN >gi|223713594|gb|ACDM01000004.1| GENE 59 61570 - 62610 1001 346 aa, chain + ## HITS:1 COG:galS KEGG:ns NR:ns ## COG: galS COG1609 # Protein_GI_number: 16130089 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 346 1 346 346 662 100.0 0 MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSD TIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALI VHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIG YLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGTPDMPGGEAAMVELLGRNLQLTA VFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT ELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM >gi|223713594|gb|ACDM01000004.1| GENE 60 62890 - 63888 1382 332 aa, chain + ## HITS:1 COG:mglB KEGG:ns NR:ns ## COG: mglB COG1879 # Protein_GI_number: 16130088 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 332 1 332 332 587 100.0 1e-167 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK >gi|223713594|gb|ACDM01000004.1| GENE 61 63949 - 65469 1586 506 aa, chain + ## HITS:1 COG:mglA KEGG:ns NR:ns ## COG: mglA COG1129 # Protein_GI_number: 16130087 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Escherichia coli K12 # 1 506 1 506 506 998 100.0 0 MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF GIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF VDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL TEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDK IIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGA KRTDIVETLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGF NSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMS NGLVSGIVDTKTTTQNEILRLASLHL >gi|223713594|gb|ACDM01000004.1| GENE 62 65485 - 66495 1443 336 aa, chain + ## HITS:1 COG:mglC KEGG:ns NR:ns ## COG: mglC COG4211 # Protein_GI_number: 16130086 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type glucose/galactose transport system, permease component # Organism: Escherichia coli K12 # 1 336 1 336 336 486 100.0 1e-137 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVA GLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIG LINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGS FRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSGV FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVIN YGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARKK >gi|223713594|gb|ACDM01000004.1| GENE 63 66738 - 67973 1310 411 aa, chain - ## HITS:1 COG:yeiA_1 KEGG:ns NR:ns ## COG: yeiA_1 COG0167 # Protein_GI_number: 16130085 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Escherichia coli K12 # 1 326 3 328 328 685 100.0 0 MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPR FDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELA RLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIG DMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALR FIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGL SHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQ AMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL >gi|223713594|gb|ACDM01000004.1| GENE 64 67967 - 69205 939 412 aa, chain - ## HITS:1 COG:yeiT KEGG:ns NR:ns ## COG: yeiT COG0493 # Protein_GI_number: 16130084 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 1 412 1 412 412 821 100.0 0 MPQQNYLDELTPAFTSLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAA ETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPG TKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLPQSVLDAE IARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL QRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFTS ARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEPQR NTIKTQNYQTRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEAIHHYLEGACSC >gi|223713594|gb|ACDM01000004.1| GENE 65 69399 - 69638 236 79 aa, chain - ## HITS:1 COG:no KEGG:G2583_2688 NR:ns ## KEGG: G2583_2688 # Name: yeiS # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 79 1 79 79 135 100.0 6e-31 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA YIGFGILSIGMIVYLIFYR >gi|223713594|gb|ACDM01000004.1| GENE 66 69641 - 70360 893 239 aa, chain - ## HITS:1 COG:ECs3036 KEGG:ns NR:ns ## COG: ECs3036 COG2949 # Protein_GI_number: 15832290 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 447 100.0 1e-126 MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTG VINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY AGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRI REFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK >gi|223713594|gb|ACDM01000004.1| GENE 67 70510 - 71394 882 294 aa, chain - ## HITS:1 COG:cdd KEGG:ns NR:ns ## COG: cdd COG0295 # Protein_GI_number: 16130081 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Escherichia coli K12 # 1 294 1 294 294 541 100.0 1e-154 MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLA AACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALA AITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQ DHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA >gi|223713594|gb|ACDM01000004.1| GENE 68 71524 - 72219 758 231 aa, chain - ## HITS:1 COG:yohK KEGG:ns NR:ns ## COG: yohK COG1346 # Protein_GI_number: 16130080 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Escherichia coli K12 # 1 231 1 231 231 383 100.0 1e-106 MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSE VLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIA ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLA MGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG >gi|223713594|gb|ACDM01000004.1| GENE 69 72216 - 72614 394 132 aa, chain - ## HITS:1 COG:yohJ KEGG:ns NR:ns ## COG: yohJ COG1380 # Protein_GI_number: 16130079 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Escherichia coli K12 # 1 132 1 132 132 218 100.0 2e-57 MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGMLILFVLLALQILPAKWV NPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAVSTLVVFLVVSWSSQLVHG ERKVVGQKGSEE >gi|223713594|gb|ACDM01000004.1| GENE 70 72853 - 73800 986 315 aa, chain + ## HITS:1 COG:yohI KEGG:ns NR:ns ## COG: yohI COG0042 # Protein_GI_number: 16130078 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli K12 # 1 315 1 315 315 644 100.0 0 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS PDIARAIQAIDIEKL >gi|223713594|gb|ACDM01000004.1| GENE 71 74173 - 74256 65 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIILWAVLIIFLIGLLVVTGVFKMIF >gi|223713594|gb|ACDM01000004.1| GENE 72 74480 - 75916 1205 478 aa, chain + ## HITS:1 COG:ECs3025 KEGG:ns NR:ns ## COG: ECs3025 COG1538 # Protein_GI_number: 15832279 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli O157:H7 # 1 478 28 505 505 876 99.0 0 MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKNGWPDSQWWL EYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQDGPQIDFSADMERQKMSAE GLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNRAEVTARLGTVKARAAEREQT RQLLAGSVARLYWEWQTQAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINA SKTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRAD LQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLTLPI FDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQIERDAL RVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALGGGYKR >gi|223713594|gb|ACDM01000004.1| GENE 73 75969 - 76730 204 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 57 241 52 238 242 83 32 7e-15 MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLD LGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQ IAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNA VAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVD GGFMLANPQFNPE >gi|223713594|gb|ACDM01000004.1| GENE 74 76860 - 77438 646 192 aa, chain - ## HITS:1 COG:yohD KEGG:ns NR:ns ## COG: yohD COG0586 # Protein_GI_number: 16130074 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli K12 # 1 192 13 204 204 333 100.0 9e-92 MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL KRRGKKKPDHQA >gi|223713594|gb|ACDM01000004.1| GENE 75 77608 - 78195 634 195 aa, chain + ## HITS:1 COG:no KEGG:APECO1_4414 NR:ns ## KEGG: APECO1_4414 # Name: yohC # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 195 9 203 203 338 100.0 9e-92 MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTI LKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLS GLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVL LALTVILWGYGYRLF >gi|223713594|gb|ACDM01000004.1| GENE 76 78408 - 79301 1074 297 aa, chain + ## HITS:1 COG:pbpG KEGG:ns NR:ns ## COG: pbpG COG1686 # Protein_GI_number: 16130072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli K12 # 1 297 17 313 313 507 100.0 1e-143 MLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMT AMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLA HHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQ LSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPV ALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND >gi|223713594|gb|ACDM01000004.1| GENE 77 79339 - 81054 1625 571 aa, chain - ## HITS:1 COG:dld KEGG:ns NR:ns ## COG: dld COG0277 # Protein_GI_number: 16130071 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1 571 1 571 571 1173 100.0 0 MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWR VLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYP GTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARIN EDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTP ARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANF ENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPH FTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYFKQAEGDFF VCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQ LVHKLYYGHFMCYVFHQDYIVKKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLYKAPET LQKFYRENDPTNSMNPGIGKTSKRKNWQEVE >gi|223713594|gb|ACDM01000004.1| GENE 78 81250 - 83547 2869 765 aa, chain + ## HITS:1 COG:bglX KEGG:ns NR:ns ## COG: bglX COG1472 # Protein_GI_number: 16130070 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Escherichia coli K12 # 1 765 1 765 765 1510 99.0 0 MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVG PDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVF PISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYL TSIMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPY KAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTA ADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFN DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLA DSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEA VKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKA TGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFP RSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSA PTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQT VSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL >gi|223713594|gb|ACDM01000004.1| GENE 79 83799 - 84716 1082 305 aa, chain + ## HITS:1 COG:ECs3018 KEGG:ns NR:ns ## COG: ECs3018 COG1732 # Protein_GI_number: 15832272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 554 99.0 1e-158 MPLSKVWAGSLVLLAAVSLPLHAASPVKVGSKIDTEGALLGNIILQVLESHGVPTVNKVQ LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQ PIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ KGWTK >gi|223713594|gb|ACDM01000004.1| GENE 80 84723 - 85880 1293 385 aa, chain + ## HITS:1 COG:ECs3017 KEGG:ns NR:ns ## COG: ECs3017 COG1174 # Protein_GI_number: 15832271 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Escherichia coli O157:H7 # 1 385 1 385 385 602 99.0 1e-172 MTYLRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQLWPQTIWMLVGVGCAWL TACFIPAKKGSIFALILAQFVFVLLVWGAGKAATQLAQNGSALARTSLGSGFWLAAALAL LACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDLSLMKEYANRQDVFDDALAQH LTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNVIQTVPSVALFGLLIAPLAALVT AFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVVGLNQIPRDVLESARAMGMSGAQRF LHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIGAGGFGALVFQGLLSSAIDLVLLGVIP VIVLAVLTDALFDLLIALLKVKRND >gi|223713594|gb|ACDM01000004.1| GENE 81 85873 - 86799 1161 308 aa, chain + ## HITS:1 COG:yehX KEGG:ns NR:ns ## COG: yehX COG1125 # Protein_GI_number: 16130067 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Escherichia coli K12 # 1 308 1 308 308 580 98.0 1e-165 MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRF AGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMAL LGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRI HRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSEL GVRLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVMNTQGQPCGTLH FQDLLEEA >gi|223713594|gb|ACDM01000004.1| GENE 82 86804 - 87535 887 243 aa, chain + ## HITS:1 COG:ECs3015 KEGG:ns NR:ns ## COG: ECs3015 COG1174 # Protein_GI_number: 15832269 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Escherichia coli O157:H7 # 1 243 1 243 243 380 100.0 1e-105 MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGIS SLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIA LILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVI INIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQ HAK >gi|223713594|gb|ACDM01000004.1| GENE 83 87516 - 87623 187 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG >gi|223713594|gb|ACDM01000004.1| GENE 84 87683 - 88414 650 243 aa, chain - ## HITS:1 COG:yehV KEGG:ns NR:ns ## COG: yehV COG0789 # Protein_GI_number: 16130065 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 243 1 243 243 466 100.0 1e-131 MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNG VQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHL FIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWL EGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFP LGI >gi|223713594|gb|ACDM01000004.1| GENE 85 88735 - 90321 1272 528 aa, chain + ## HITS:1 COG:yehU KEGG:ns NR:ns ## COG: yehU COG3275 # Protein_GI_number: 16130064 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Escherichia coli K12 # 1 528 34 561 561 1013 100.0 0 MQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGL TGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMV QMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATAL KVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPI SSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKN RLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKA VIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIA IPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQP VTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA >gi|223713594|gb|ACDM01000004.1| GENE 86 90318 - 91037 897 239 aa, chain + ## HITS:1 COG:ECs2936 KEGG:ns NR:ns ## COG: ECs2936 COG3279 # Protein_GI_number: 15832190 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1 239 6 244 244 459 100.0 1e-129 MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI SGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERS KQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLR TLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL >gi|223713594|gb|ACDM01000004.1| GENE 87 91084 - 91554 448 156 aa, chain + ## HITS:1 COG:ECs2935 KEGG:ns NR:ns ## COG: ECs2935 COG4807 # Protein_GI_number: 15832189 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 300 100.0 7e-82 MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSF LNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILAILTEQQFRVSMPEI TAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS >gi|223713594|gb|ACDM01000004.1| GENE 88 91595 - 92056 542 153 aa, chain - ## HITS:1 COG:ECs2934 KEGG:ns NR:ns ## COG: ECs2934 COG4808 # Protein_GI_number: 15832188 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 153 5 157 157 244 98.0 3e-65 MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETK IQFASIGATTKEDAARALEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALHG ISGINVSAEDAKKGITMAQMELVMKAAGFKEVK >gi|223713594|gb|ACDM01000004.1| GENE 89 92181 - 94184 1123 667 aa, chain - ## HITS:1 COG:ECs2931 KEGG:ns NR:ns ## COG: ECs2931 COG2801 # Protein_GI_number: 15832185 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 667 1 667 745 1266 96.0 0 MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLA NGQALKEAQCTCGASGMCRHRVMLVLSYQRLCATAQPAEKEEEWDPAIWLEELATLPDAT RKRAQALVAKGITIELFCTPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHIVLA VQAFVEAKAQQAEFNHLIWQMRSEHVTSSDDPFASEEGQTCRQYVQQLSQALWLGGISQP LIHYEAAFSRAQQAAERCNWRWVSESLRQLRASVDAFHARASHYHAGECLCQLAALNSRL NCAHEMAQRDSVGEIPPMPWRTVVGAGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT DPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR NRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS LGWDSSRQTLDAQVISGEGEDNLLTLSLPASASAPYAVERMAALLQQTDDPVYLVSGFVS FVDGQLTLEPQVMMTKTRAWALDAETAPVVVSLPSTSVLPVPSTAHQLLMRCQALLIQLL HNGWRYQEQSAISQAELLANDLTAVGFYRLAHVLAQFRNTESEARVEAMNNGVLLCEQLF PMLQQQG >gi|223713594|gb|ACDM01000004.1| GENE 90 94181 - 95317 883 378 aa, chain - ## HITS:1 COG:no KEGG:JW5350 NR:ns ## KEGG: JW5350 # Name: yehP # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 378 1 378 378 739 99.0 0 MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEWLYGRDPERLQRGERSG GLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVVTNLDVLERMQPSESLLRA VLHTKHLMNPEVLATARRIVRQVVEEIMARLAKEVRQAFSGVRDRRRRSFIPLARNFDFK STLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLVLLVDQSGSMVDSVIHSAVMAAC LWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQLGGGTNIASAVEYGRQLIEQPAKS VIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGLAALDSTATPCYDRDTAQALVNVGAQI AAMTPGELASWLAENLQS >gi|223713594|gb|ACDM01000004.1| GENE 91 95310 - 97589 1635 759 aa, chain - ## HITS:1 COG:no KEGG:EcolC_1528 NR:ns ## KEGG: EcolC_1528 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 759 1 759 759 1413 99.0 0 MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRVDELFLAHQLPVAIYSY CQYQDGAAPGRGAWTPFAEFSPEWQALQAARCIQAQTYFIDLPCWAQSEEEDDSPDTQEE SQTLLLRATRMDNSDTLWDHLFEDESQQIALPSALAHYFAQLRGDSPGDVLNRQREAFMT RWIGWAMQQNDGDVLVVCGGWHAPALAKMWRECPQEINKPELPSLADAVTGCYLTPYSEK RLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKTILTRLRQHKLPASTADMAAAHLHA MALAQLRGHTLPLRTDWLDALAGSLIKEALNAPLPWSYRGVIHPDTDPILLTLIDTLAGD GFGKLAPSTPQPPLPKDVTCELERTAISLPAELTLNRFNPNGLAQSQVLHRLAILEIPGI VRQQGSTLTLAGNGEEHWKLTRPLSQHAALIEAACFGATLQEAARHKLEADMLDTGGIGS ITTCLSQAALAGLASFSQQLLEQLTLLIAQENQFAEMGQALEVLYALWRLDEISGMQGAQ ILQTTLCAAIDRTLWLCESNGRPDEKEFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAV ALLERRSQAIHAPALDRGAALGALMRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALA RHQLACQPAFIAGFSSHLNQLSDDDFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQ LPVSALQMPLHCPPQAIAHHQQLEQQALASLQHWGVFHV >gi|223713594|gb|ACDM01000004.1| GENE 92 97600 - 98688 1003 362 aa, chain - ## HITS:1 COG:ECs2927 KEGG:ns NR:ns ## COG: ECs2927 COG0714 # Protein_GI_number: 15832181 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Escherichia coli O157:H7 # 1 362 23 384 384 713 99.0 0 MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAARAFILGDSAQNISRKVV ISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISGDAGLTIQGGASTTEDQIK YGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITRTPLEVQDCLLGMLSDRVMTV PELTSEASQLYAREGFNIIATANTRDRGVNEMSAALKRRFDFETVFPIMDFAQELELVAS ASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEKKTSMDTLTAIMSTAEAVNVAHAVG VRAWFLANRAGEPADLVDCIAGTIVKDNEEDRARLRRYFEQRVATHKEAHWQAYYQARHR LP >gi|223713594|gb|ACDM01000004.1| GENE 93 98995 - 99312 108 105 aa, chain - ## HITS:1 COG:no KEGG:EcolC_1530 NR:ns ## KEGG: EcolC_1530 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 105 1 105 105 192 100.0 3e-48 MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCPELFTGSVYRLERFRLHPTFHQRDREDAD PLINDALIYIRDECNDERKLRGESPETVIAIFNRELQNIFNQEIE >gi|223713594|gb|ACDM01000004.1| GENE 94 99373 - 103005 2644 1210 aa, chain - ## HITS:1 COG:no KEGG:EcolC_1531 NR:ns ## KEGG: EcolC_1531 # Name: not_defined # Def: putative regulator # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 1210 1 1210 1210 2366 99.0 0 MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQTLGDELLQKAEKKKNI VWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQNDSQQLLDEIVQQEGLEY ATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQ RCADKLIAALPGITKVRRPFIALILPEKPEIANELVGLECPRTHFHSKEWLKVVANDPTA VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGSLL VQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGYPIIE DKKLPAQQKARDEYWRTLLQTLMASQPQLAAEVMPWLSTQPQSVLKSYLSAPPKPVIDGT DNSNLPEILVSPPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATEPARYFSTESL AQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLFVQWHYYQGRVEEILNGWN SPEAQLAEQALRSGHIEALINIWENDNYSHYRPEKSVWNLYLLAQLPREMALTFWLRINE KKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATELALPVAHVWRRFAAQ RDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQGHGELLQTVANRWQRT DVWSALEQLLKQDPMDIYPARIPKAPDFWHPAMWSRPRLITNNQPVTGDALEIIGEMLRF TQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARD LTTQILAWPQEGKSARAVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVA ENRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPR LRADDDQLKAPEALTRLKGLKKDATQVSKNLLPRLEAALRTTRRWSLADFHSLFVNHPFT RLVTQRLIWGGYPANEPRRLLNAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMAVEM RSEFAQLFADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWES GYEDTFVYDLGEYRLVLKFSPGFNHYNVDSKALMSCRSLRVYRDNKSVTFAELDVFDLSE ALSAPDVIFH >gi|223713594|gb|ACDM01000004.1| GENE 95 103015 - 106809 2070 1264 aa, chain - ## HITS:1 COG:molR_g1_1 KEGG:ns NR:ns ## COG: molR_g1_1 COG3831 # Protein_GI_number: 16130053 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 112 1 112 112 206 98.0 2e-52 MRHFIYQDEKSHKFWAVEQQGNELHISWGKVGTKGQSQIKSFSDAAAAEKAELKLIAEKV KKGYVEQAKDNSLQPSQTVTGSLKVADLSTIIQEQPSFVAETRAPDKNTDAVLPWLAKDI AVVFPPEVVHTTLSHRRFPGVPVQQADKLTQLRRLACSVSQRDNKTATFDFSACSLEWQN TVAQAISQIDGLKTTQLPSPVMAVLTALEMKCTRYKVREDVMDQIVQEGGLEYATDVIIH LQQIDIEWDYANNVIIILPSGIAPSYLEQYSRFELRLRKHLSLTEESLWQKCAQKLIAAI PHIPEWRQPLIALLLPEKPEIAHEIAQRLLGQKKLPSLEWLKIVATDEHILASLEKYHEP YAIFDDYYCGAIWSATVLQEQGVAALPRFAPYAASDYCADVLRHINHPFALTLLIRVAGQ TKRCHDRMTKAIAAFPHAAMAALTELLGQKEENSWRIMLMTMLISQPALAEQVIPWLSTP AVAVLKSCQQQLTQPSNHASADLLPAVVVSPPWLSKKKKSPIPVLDLAPLGIEPICYLTE EISNQLLAKYIWYSKHITVSHEESTTNLLARMGFQRRIAGTYIKAPEAVVEAWLNEDYST LLSEFKVFHSPTGHYWQLGILTTLPLEKAVKAWNALTLSPHTDTEYSMLHFGLKGLPGLV NSLARYPQEALPITNYFAASELAPAVARAFNKLKTLRENARSWLLKYPEHALTGLLPAAL GKAGEAQDNARAALRMLTENGHQPLLQEIARRYNQPEVTDAVNALLALDPLDNHPTKIPT LPAFYQPSLWTRPVLKANAQSLPDSALLHLGEMLRFPQEEALYPGLLQVKDVCSADSLAG FAWDLFTAWQTAGAPSKESWAFTALGVLGNDDTARKLTPLIRAWPGESQHKRATVGLDIL AAIGSDIALMQLNGIAQKLKFKALQERAKEKIADIAESRELTVAELEDRLAPDLGLDDNG SLLLDFGPRQFTVSFDETLKPFVRDVSGSRLKDLPKPNKSDDETRANDAVNRYKLLKKDA RTIAAQQVARLESAMCLRRRWSLENFQLFLVEHPLVRHLTRRLIWGVYSAENQLLACFRV AEDNSSSTADDDLFTLPEGDISIGTPHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSY ALTEAERNASELTRWAGRKCPSGRVMGLANKGWIKGEPQDGGWIGWMIKPLGRWSLIMEI DEGFAVGMSPAELSAEQLLSKLWLWEGKAERYGWGSNSTQEAQFSVIDAITASELINDIE ALFE >gi|223713594|gb|ACDM01000004.1| GENE 96 106950 - 108983 2358 677 aa, chain - ## HITS:1 COG:ZmetG_1 KEGG:ns NR:ns ## COG: ZmetG_1 COG0143 # Protein_GI_number: 15802593 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Escherichia coli O157:H7 EDL933 # 1 567 1 567 567 1204 99.0 0 MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIM LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFI KNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSG ATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFG FEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY FHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYY TAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLANELADPQLYK TFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSM GINLFRVLMTYLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMKQV EALVEASKEEVKAAAAPVTGPLADDPIQETITFDDFAKVDLRVALIENAEFVEGSDKLLR LTLDLGGEKRNVFSGIRSAYPDPQALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKD IFLLSPDAGAKPGHQVK >gi|223713594|gb|ACDM01000004.1| GENE 97 109115 - 110224 1138 369 aa, chain + ## HITS:1 COG:ECs2919 KEGG:ns NR:ns ## COG: ECs2919 COG0489 # Protein_GI_number: 15832173 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Escherichia coli O157:H7 # 1 369 11 379 379 726 100.0 0 MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWH SAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPGINGVKNIIAVSSGKGGVG KSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLAT NSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPV TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEK LAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQLYWQGEVI PGEISFRAV >gi|223713594|gb|ACDM01000004.1| GENE 98 110487 - 110768 162 93 aa, chain + ## HITS:1 COG:no KEGG:JW2099 NR:ns ## KEGG: JW2099 # Name: yehE # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 93 1 93 93 189 100.0 3e-47 MNKYWLSGIIFLAYGLASPAFSSETATLAINGRISPPTCSMAMVNGQPQQHCGQLTYNVD TRHLFSSPVKGVTTEVVVAGSDSKRRIVLNRYD >gi|223713594|gb|ACDM01000004.1| GENE 99 111061 - 111603 450 180 aa, chain + ## HITS:1 COG:yehD KEGG:ns NR:ns ## COG: yehD COG3539 # Protein_GI_number: 16130049 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 180 1 180 180 313 98.0 1e-85 MKRSIIAVAVFSSFFMSAGVFAADVDTGTLTIKGNIAQSPCKFEAGGDSVSINMPTVPTS VFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYY LYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD >gi|223713594|gb|ACDM01000004.1| GENE 100 111683 - 112357 410 224 aa, chain + ## HITS:1 COG:yehC KEGG:ns NR:ns ## COG: yehC COG3121 # Protein_GI_number: 16130048 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 224 16 239 239 415 100.0 1e-116 MKGLLSLLIFSMVLPAHAGIVIYGTRIIYPAENKEVMVQLMNQGNRSSLLQAWIDDGDTS LPPEKIQVPFMLTPPVAKIGANSGQQVKIKIMPNKLPTNKESIFYLNVLDIPPNSPEQEG KNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLVNRSGNGLVIKNDSANWVTISDVKANN VKVNYETIMIAPLESQSVNVKSNNANNWHLTIIDDHGNYISDKI >gi|223713594|gb|ACDM01000004.1| GENE 101 112373 - 114853 1695 826 aa, chain + ## HITS:1 COG:yehB KEGG:ns NR:ns ## COG: yehB COG3188 # Protein_GI_number: 16130047 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 826 1 826 826 1625 99.0 0 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDI YVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDI GVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYLSQYYSDYKASGNNKSTYVRF NSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQ LAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASKQSDFVQ AGYQYGFNNLLTLYGGSMVANNYYAFTLGAGWNTRIGAISVDATKSHSKQDNGDVFDGQS YQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDENDVYDIADYYQND FGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSNNLRRISYTLAASQ AYDENHHEEKRFNIFISIPFDWGDDVSTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSR DQFNYGVNLSHQHQGNETTAGANLTWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGG VNLANRLSETFAVMNAPGIKDAYVNGQKYRTTNRNGVVVYDGMTPYRENHLMLDVSQSDS EAELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRTDGQPLTFGYEVNDIHGHNIGVV GQGSQLFIRTNEVPPSVNVAIDKQQGLSCTITFGKEIDESRNYICQ >gi|223713594|gb|ACDM01000004.1| GENE 102 115064 - 115903 355 279 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_2440 NR:ns ## KEGG: ECUMN_2440 # Name: yehA # Def: putative exported fimbrial-like adhesin protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 279 66 344 344 465 99.0 1e-130 MSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQTSFTSGYSVTVTPAASNAKVNVSAG GGGSVMINGVATLSSASSSTRGSAAVQFLLCLFGGKSWDACVNSYRNALAQNAGVYSFNL TLSYNPITTTCKPDDLLITLDSIPVSQLPAKGNKATINSNKGDIVLRCKNLLGQQNQTSR KMQVYLSSSDLWGSSNTILKGAEDNGVGFILESNGSPVTLLNITNSSKGYTNLKEVAAKS KLTDTTISIPITASYYVYDTNKVKSGALEATALINVKYD >gi|223713594|gb|ACDM01000004.1| GENE 103 115985 - 116323 316 112 aa, chain - ## HITS:1 COG:yohN KEGG:ns NR:ns ## COG: yohN COG5455 # Protein_GI_number: 16130045 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1 112 61 172 172 207 98.0 5e-54 MTIKNKMLLGVLLLVTSAAWAAPATAGSTNTSGISKYELSSFIADFKHFKPGDTVPEMYR TDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR >gi|223713594|gb|ACDM01000004.1| GENE 104 116542 - 117366 601 274 aa, chain - ## HITS:1 COG:ZyohM KEGG:ns NR:ns ## COG: ZyohM COG2215 # Protein_GI_number: 15802585 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 EDL933 # 1 274 1 283 283 446 90.0 1e-125 MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAAT ISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIIGTAFWMFWRTWRGERNWLENM HEHDHEHHHHDHEDHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGL TGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLASTLVTVGVGAAISVQQVAKRWS GFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR >gi|223713594|gb|ACDM01000004.1| GENE 105 117487 - 117759 401 90 aa, chain + ## HITS:1 COG:ECs2911 KEGG:ns NR:ns ## COG: ECs2911 COG1937 # Protein_GI_number: 15832165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 146 100.0 1e-35 MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGH LTEHIVHQGDELKREEDLDVVLKVLDSYIK >gi|223713594|gb|ACDM01000004.1| GENE 106 118063 - 118770 452 235 aa, chain + ## HITS:1 COG:ECs2907 KEGG:ns NR:ns ## COG: ECs2907 COG2145 # Protein_GI_number: 15832161 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Escherichia coli O157:H7 # 1 235 28 262 262 407 95.0 1e-114 MTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVE QAKRSQTPWTLDPVAVGALDYRRCFCLELLSHKPTAIRGNASEIMALAGIANGGRGVDTT DAAANAIPAAQTLARETGAIVVVTGEVDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVV AACCALPGDMLENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTPEVQA >gi|223713594|gb|ACDM01000004.1| GENE 107 118767 - 119567 654 266 aa, chain + ## HITS:1 COG:thiD KEGG:ns NR:ns ## COG: thiD COG0351 # Protein_GI_number: 16130041 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Escherichia coli K12 # 1 266 1 266 266 513 99.0 1e-145 MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFV AAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNVVLDTVMLAKSGDPLLSPS AVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRSLLAMGCGAVLMKGGHL DDEQSPDWLFTREGEQRFTAQRIMTKNTHGTGCTLSAALAALRPRHTNWADTVQEAKSWL SSALAQADTLEVGHGIGPVHHFHAWW >gi|223713594|gb|ACDM01000004.1| GENE 108 119632 - 120450 601 272 aa, chain + ## HITS:1 COG:yegX KEGG:ns NR:ns ## COG: yegX COG3757 # Protein_GI_number: 16130040 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli K12 # 1 272 4 275 275 541 96.0 1e-154 MQLRITSRKKFTALLCALGLISIVAIYPRQTVNFFYSTAIQIKDYIHFYGYRPVKSFAIR IPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSR ENGLLRGAYHYFSPSVSASVQARLFLQTVDFAHGDLPAVLDVEERGKLSAKELRKRVSQW LKMVEKRTGKKPIIYSGAVFYHSNLAGYFNEYPWWVAHYYQRRPDNDGIAWRFWQHSDRG QVDGINGPVDFNVFNGTVEELQAFVDGIKETP >gi|223713594|gb|ACDM01000004.1| GENE 109 120502 - 121248 555 248 aa, chain + ## HITS:1 COG:ECs2904 KEGG:ns NR:ns ## COG: ECs2904 COG2188 # Protein_GI_number: 15832158 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 477 100.0 1e-135 MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVS RITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKR VVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESWVPAHLIHDVDAIGISLYDYF RSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSD LYVFVCEE >gi|223713594|gb|ACDM01000004.1| GENE 110 121222 - 122187 879 321 aa, chain - ## HITS:1 COG:ECs2903 KEGG:ns NR:ns ## COG: ECs2903 COG0524 # Protein_GI_number: 15832157 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 626 97.0 1e-179 MSGARLHTLLPELATRQPVMVVGAAVIDVIADAYALPWRGCDIELKQQSVNVGGCALNIA VALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAEGDNGWCLALVEPDGERTF MSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGELLVEWLEELQDVTPFIDFGPR IGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAEITTLGKQWQEKFAAPLIVRLDK EGAWYFSNDASGCIPAYPTQVVDTIGAGDSHAGGVLAGLASGLPLADAVLLGNAVASWVV GHRGGDCAPTREELLLAHKNV >gi|223713594|gb|ACDM01000004.1| GENE 111 122184 - 123188 956 334 aa, chain - ## HITS:1 COG:yegU KEGG:ns NR:ns ## COG: yegU COG1397 # Protein_GI_number: 16130037 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Escherichia coli K12 # 1 334 1 334 334 640 99.0 0 MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPGPKENNAACYFNRAEFT DDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKNVLGPTSKIALNAIRDGKP VAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALASSPTHKSDLAVAGAVVIAWAI SRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAARLEIALKIVRNADGIESASEQLY QVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCANLGGDTDTIGAMATAICGALHGVNA IDPALKTELDAVNQLDFNRYATALAKYRQQREAI >gi|223713594|gb|ACDM01000004.1| GENE 112 123185 - 124462 1429 425 aa, chain - ## HITS:1 COG:ECs2901 KEGG:ns NR:ns ## COG: ECs2901 COG0477 # Protein_GI_number: 15832155 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 425 1 425 425 763 99.0 0 MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYACTAIAAILSPILVGSI TDRFFSAQKVLAVLMFAGAALMYFAAQQTTFAGFFPLLLAYSLTYMPTIALTNSIAFANV PDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYADISPTNIPLLITAGSSALLGVFAFF LPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCSFLFAMPLAFYYIFANGYLTEVG MKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLLLGLVTAAIRYGFFIYGSADEYFTY ALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMRTAAQGLITLCCQGFGSLLGYRLGGVM MEKMFAYQEPVNGLTFNWSGMWTFGAVMIAIIAVLFMIFFRESDNEITAIKVDDRDIALT QGEVK >gi|223713594|gb|ACDM01000004.1| GENE 113 124719 - 125771 1172 350 aa, chain + ## HITS:1 COG:ECs2900 KEGG:ns NR:ns ## COG: ECs2900 COG1830 # Protein_GI_number: 15832154 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli O157:H7 # 1 350 25 374 374 695 100.0 0 MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTG RLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVS RRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIE EISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKM AENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLS DAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA >gi|223713594|gb|ACDM01000004.1| GENE 114 125999 - 126853 698 284 aa, chain + ## HITS:1 COG:gatY KEGG:ns NR:ns ## COG: gatY COG0191 # Protein_GI_number: 16130034 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli K12 # 1 284 3 286 286 556 99.0 1e-158 MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAPVIIAGTPGTFTHAGTE NLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVMIDASHLPFAQNISRVKEV VDFCHRFDVSVEAELGQLGGQEDDVQVNEADALYTNPVQAREFAEATGIDSLAVAIGTAH GMYASAPVLDFSRLENIRQWVNLPLVLHGASGLSTKDIQQTIKLGICKINVATELKNAFS QALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIADCGCEGRA >gi|223713594|gb|ACDM01000004.1| GENE 115 126882 - 128144 959 420 aa, chain + ## HITS:1 COG:gatZ KEGG:ns NR:ns ## COG: gatZ COG4573 # Protein_GI_number: 16130033 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted tagatose 6-phosphate kinase # Organism: Escherichia coli K12 # 1 420 1 420 420 849 98.0 0 MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMT PADFREFVFAIADRVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKAYVRAGFSK IHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEAS AIQSVHITHVEDAANTLRTHQKAFIARGLAEALTRVIAIVVQPGVEFDHSNIIHYQPQEA QPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQ ELIAPENRSGCLAVIEEVMLDEPQYWKKYYRPGFNDSLLDIRYSLSDRIRYYWPHSRIKN SVETMMVNLEGMEIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGCAE >gi|223713594|gb|ACDM01000004.1| GENE 116 128154 - 128606 259 150 aa, chain + ## HITS:1 COG:ECs2897 KEGG:ns NR:ns ## COG: ECs2897 COG1762 # Protein_GI_number: 15832151 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1 150 1 150 150 292 99.0 1e-79 MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIAREAEFPTGIMLEQHAIAI PHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVAVSLVIALIVENPQQQLKLLRCLFGKL QQPEIVETLITLPETQLKEYFTKYVLDSDE >gi|223713594|gb|ACDM01000004.1| GENE 117 128637 - 128921 335 94 aa, chain + ## HITS:1 COG:ECs2896 KEGG:ns NR:ns ## COG: ECs2896 COG3414 # Protein_GI_number: 15832150 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 1 94 1 94 94 179 98.0 1e-45 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAKV DRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG >gi|223713594|gb|ACDM01000004.1| GENE 118 128925 - 130280 1718 451 aa, chain + ## HITS:1 COG:ECs2895 KEGG:ns NR:ns ## COG: ECs2895 COG3775 # Protein_GI_number: 15832149 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 # 1 451 1 451 451 804 99.0 0 MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIGIGFVGIGLVIGLMLDS IGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPIAILVNVAMLLTRMTRVVN VDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKLGDWFARDTRNFFELEGIAIP HGTSAYLGPIAVLVDAIIEKIPGVNRIKFSADDIQRKFGPFGEPVTVGFVMGLIIGILAG YDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAKQARSRLQAKFGGQEFLIGLDPALL LGHTAVVSASLIFIPLTILIAVCVPGNQVLPFGDLATIGFFVAMAVAVHRGNLFRTLISG VIIMSITLWIATQTIGLHTQLAANAGALKAGGMVASMDQGGSPITWLLIQVFSPQNIPGF IIIGAIYLTGIFMTWRRARGFIKQEKAVLAE >gi|223713594|gb|ACDM01000004.1| GENE 119 130328 - 131368 718 346 aa, chain + ## HITS:1 COG:ECs2894 KEGG:ns NR:ns ## COG: ECs2894 COG1063 # Protein_GI_number: 15832148 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1 346 1 346 346 706 98.0 0 MKSVVNDTDGIVRIAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHE FSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEY IVVKRKNVFALPTDMSIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCA VALGAKSVTAIDISSEKLALAKSFGAMQTFNSLEMSAPQMQGVLRELRFNQLILETAGVP QTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWE TASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP >gi|223713594|gb|ACDM01000004.1| GENE 120 131474 - 132247 514 257 aa, chain + ## HITS:1 COG:gatR KEGG:ns NR:ns ## COG: gatR COG1349 # Protein_GI_number: 16132228 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 257 3 259 259 454 100.0 1e-128 MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGVVTRFHGGAAKIM SGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVILDSGSTTMLIAEGLMTAK NITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGSIAERSLQDINADLMFVGADG IDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVS EVDKLALQKTRVKLITV >gi|223713594|gb|ACDM01000004.1| GENE 121 132329 - 133228 633 299 aa, chain - ## HITS:1 COG:ECs2892 KEGG:ns NR:ns ## COG: ECs2892 COG1597 # Protein_GI_number: 15832146 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Escherichia coli O157:H7 # 1 299 1 299 299 593 99.0 1e-169 MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKLGVAT VIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVRIPEALDKALKLAIAGD AIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGGVSYIIHGLMRMDTLQPDRC EIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLK SDEDNPNIIEGASSWFDIQAPHEITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR >gi|223713594|gb|ACDM01000004.1| GENE 122 133685 - 133960 195 91 aa, chain + ## HITS:1 COG:no KEGG:ECSE_2357 NR:ns ## KEGG: ECSE_2357 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 91 35 125 125 181 100.0 6e-45 MSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDAAHFC VTQGKKMQIVDLKTEGAGLHGVARLTFKCGE >gi|223713594|gb|ACDM01000004.1| GENE 123 134290 - 135651 1663 453 aa, chain - ## HITS:1 COG:ECs2889 KEGG:ns NR:ns ## COG: ECs2889 COG0826 # Protein_GI_number: 15832143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 923 99.0 0 MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQLGINEAHALGK KFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIMLVREHFPEMPIHLSVQAN AVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDMEIEIFVHGALCMAYSGRCLLS GYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKYEPIPVQNVEPTLGIGAPTDKVF MIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVERLTKMGVHSLKIEGRTKSFYYCAR TAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGYTEGFLRRHTHDDYQNYEYGYSVSDRQ QFVGEFTGERKGDLAAVAVKNKFSVGDSLELMTPHGNINFTLEQMENAKGEAMPVAPGDG YTVWIPVPQDLELNYALLMRNFSGETTRNPHGK >gi|223713594|gb|ACDM01000004.1| GENE 124 135799 - 136131 373 110 aa, chain - ## HITS:1 COG:yegP KEGG:ns NR:ns ## COG: yegP COG3422 # Protein_GI_number: 16130020 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 110 14 123 123 169 99.0 9e-43 MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNSPQEERYEKKT ASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT >gi|223713594|gb|ACDM01000004.1| GENE 125 136311 - 137033 831 240 aa, chain - ## HITS:1 COG:baeR KEGG:ns NR:ns ## COG: baeR COG0745 # Protein_GI_number: 16130019 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 240 1 240 240 464 100.0 1e-131 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV >gi|223713594|gb|ACDM01000004.1| GENE 126 137030 - 138433 1310 467 aa, chain - ## HITS:1 COG:ECs2886 KEGG:ns NR:ns ## COG: ECs2886 COG0642 # Protein_GI_number: 15832140 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1 467 1 467 467 914 100.0 0 MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQRLQLLSDALGE QYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHGWRTQFWVVDQNNKVLVGP RAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFDKQQRQTSWLIVALATLLAAL ATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDELGKLAQDFNQLASTLEKNQQM RRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPETVASLQAEVGTLTKLVDDLHQLSM SDEGALAYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLPDSITVFGDRDRLMQLFNN LLENSLRYTDSGGSLKISAEQHDKTVRLTFADSAPGVSDDQLQKLFERFYRTEGSRNRAS GGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERDLQREV >gi|223713594|gb|ACDM01000004.1| GENE 127 138430 - 139845 1345 471 aa, chain - ## HITS:1 COG:ECs2885 KEGG:ns NR:ns ## COG: ECs2885 COG0477 # Protein_GI_number: 15832139 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 471 1 471 471 749 99.0 0 MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAV MLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGR LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA TLMLMPNYTMQTRRFDLSGFLLLAIGMAVLTLALDGSKGTGLSPLAIAGLVAVGVVALVL YLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALLGWYYVLPFVL FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQH VSIDSGTTQTVFMYTWLSMAFIIALPAFIFARVPNDTHQNVAISRRKRSAQ >gi|223713594|gb|ACDM01000004.1| GENE 128 139846 - 142923 3222 1025 aa, chain - ## HITS:1 COG:yegO KEGG:ns NR:ns ## COG: yegO COG0841 # Protein_GI_number: 16130016 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1025 1 1025 1025 1868 99.0 0 MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMA SSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLP SGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVGGS SLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTAAE YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSI RAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATI IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKP LQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLT LTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKSLKWVLNHTRLVGVVLLGTIALN IWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTG GSRVNSGMMFITLKPRDERSETAQQIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNAS YQYTLLSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDV QAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSY FAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAG TAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNA PFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLA ALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPK QTVTE >gi|223713594|gb|ACDM01000004.1| GENE 129 142924 - 146046 3423 1040 aa, chain - ## HITS:1 COG:ECs2883 KEGG:ns NR:ns ## COG: ECs2883 COG0841 # Protein_GI_number: 15832137 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli O157:H7 # 1 1040 1 1040 1040 1803 99.0 0 MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLY PGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAA INAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG VGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSA NDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGA NIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDTQFELMMAIALVVMIIYL FLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENIS RYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAI LISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFERIIAAYGRGLAKVLNHPWLTL SVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFTNMAQRQRQVADVILQDP AVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQP TQDLTIDTQVSRTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYV NVDRDSASRLGINMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTI RLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEK TLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPT AGVGALLALLIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQA CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYL LFDRLALWTKSRFARHEEEA >gi|223713594|gb|ACDM01000004.1| GENE 130 146046 - 147293 1301 415 aa, chain - ## HITS:1 COG:yegM KEGG:ns NR:ns ## COG: yegM COG0845 # Protein_GI_number: 16130014 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 415 50 464 464 715 99.0 0 MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQQSPAGGRRGMRSGPLA PVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDP SQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVSETEGTIK ADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTL PESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQD DALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQDSQ KVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTSEEKATSREYAKKGARS >gi|223713594|gb|ACDM01000004.1| GENE 131 148837 - 149496 571 219 aa, chain + ## HITS:1 COG:ECs2881 KEGG:ns NR:ns ## COG: ECs2881 COG4245 # Protein_GI_number: 15832135 # Func_class: R General function prediction only # Function: Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 403 98.0 1e-112 MSEQIMFATSDFASNPEPRCPCILLLDVSGSMNGRPINELNAGLVTFRDELLADSLALKR VELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITKALDMVEERKREYRANGIS YYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIGVQGADMKTLAQISVRQPLPL QGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTSV >gi|223713594|gb|ACDM01000004.1| GENE 132 149574 - 150254 539 226 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_2410 NR:ns ## KEGG: ECUMN_2410 # Name: yegK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 226 28 253 253 437 100.0 1e-121 MQVAWLNDQQPLLSVFVADGAGSVSQGGEGAMLAVNEAMAYMSQKVQGGELGLNDVLATD IVLTIRQRLFAEAEAKELAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLT PMVGEYANMTHFITDEDAVSRLETFTSTERAHKVAAFTDGIQRLALNMLDNSPHVPFFTP FFNGLASATQEQLDLLPELLKQFLSGPAVNERTDDDKTLALALWTE >gi|223713594|gb|ACDM01000004.1| GENE 133 150319 - 150762 419 147 aa, chain - ## HITS:1 COG:yegJ KEGG:ns NR:ns ## COG: yegJ COG3779 # Protein_GI_number: 16130011 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 147 7 153 153 288 99.0 3e-78 MLSLLFFTTAGFSEVSDTLVTGGYDKQAMSDAIQHARKETDKFIEVMNKKDADTFAVKAP ITDHGRTEHFWLTDVTYSNGMFIGVISNDPGIVTNVEYGQEWKIKKEDISDWMYTRGDKI YGGYTIDPLLVTYPKEEADELRAKLVR >gi|223713594|gb|ACDM01000004.1| GENE 134 150981 - 152927 1196 648 aa, chain + ## HITS:1 COG:yegI KEGG:ns NR:ns ## COG: yegI COG4248 # Protein_GI_number: 16130010 # Func_class: R General function prediction only # Function: Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains # Organism: Escherichia coli K12 # 1 648 1 648 648 1276 96.0 0 MKTNIKVFTSTGELTTLGRELGKGGEGAVYDIEEFVDSVAKIYHTPPPALKQDKLAFMAA TADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYSPAHRRQSYPHCAWDFL LYVARNIASSFATIHEHGHVVGDVNQNSFMVGRDSKVVLIDSDSFQINANGTLHLCEVGV SHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGRHPYSGVPLISDAGNALETDI AHFRYAYASDNQRRGLKPPPRSIPLSMLPGDVEAMFQQAFTESGVATGRPTAKAWVAALD SLRQQLKKCTVSAMHVYPGHLTDCPWCALDNQGVIYFIDLGEEVITTGGDFVLAKVWAMV MASVAPPALQLPLPDHFQAAGRPLPLGLLRREYIILIEIALSALSLLLCGLQAEPRYIIL VPVLAAIWIIGSLTSKAYKAEIQQRREAFNRAKMDYDHLVSQIQQLGGLEGFIAKRTMLE KMKDEILGLPEEEKRDLAALQDTARERQKQKFLEGFFIDVASIPGVGPARKVALRSFGIE TAADVTRRSVKQVRGFGDHLTQAVIDWKASCERRFVFRPNEAVTPVDRQAVMAKMTAKRH QLESALTVGATELQRFRLHAPARTMPLMEPLRQAAEKLAQAQADLSCC >gi|223713594|gb|ACDM01000004.1| GENE 135 152940 - 154292 1591 450 aa, chain - ## HITS:1 COG:yegD KEGG:ns NR:ns ## COG: yegD COG0443 # Protein_GI_number: 16130009 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli K12 # 1 450 22 471 471 880 97.0 0 MFIGFDYGTANCSVAVMRDGKPQLLKMENDSTLLPSMLCAPTREAVSEWLYRHHDVPADD DETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEEVWFVKSPKSFLGASGLKP QQVALFEDLVCAMMLHIRQQAQAQLPDAITQAVIGRPINFQGLGGDEANTQAQGILERAA KRAGFKDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDREA SLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSDF YSSANGRLLNDLVRDAREPDKVALLQKVWRQRLSYRLVRSAEESKIALSSVAETRASLPF ISDELATLISQQGLESALNQPLARILEQVQLALDNAQEKPDVIYLTGGSARSPLIKKALA EQLPGIPIAGGDDFGSVTAGLARWAEVVFR >gi|223713594|gb|ACDM01000004.1| GENE 136 154426 - 155283 776 285 aa, chain + ## HITS:1 COG:alkA KEGG:ns NR:ns ## COG: alkA COG0122 # Protein_GI_number: 16130008 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Escherichia coli K12 # 1 280 1 280 282 549 97.0 1e-156 MYTLNWQPPYDWSWMLGFLAARAVNGVETVADDYYARSLAVGEYRGVVTAIPDIARHTLH INLSAGLEPIAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGCVDAFEQGVRA ILGQLVSVAMAAKLTARVAQLYGERLDDFPDYVCFPTPQRLAAADPQALKALGMPLKRAE ALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL IKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDGTDEL >gi|223713594|gb|ACDM01000004.1| GENE 137 155321 - 158638 2794 1105 aa, chain - ## HITS:1 COG:Z3235m_2 KEGG:ns NR:ns ## COG: Z3235m_2 COG2202 # Protein_GI_number: 15804978 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Escherichia coli O157:H7 EDL933 # 301 670 1 370 370 772 99.0 0 MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRH AGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQN LVDWLRLALGSAIVPPLLGGVLVILLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPH YLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFL TTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISES ETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDL QQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRT EQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVL PEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDM TEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPL LTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNNTHQRHALVFID LDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFI ATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRV TIYEPQQAATHSERAAISLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSCE GEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKGLSIALPLSVAGLSSATLV NELIEQLENSPLPPRLLHLIIPADAILDHAESVQKLRLAGCRIVFSQVGRDLQIFNSLKA NMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVD LIYGDVIADAQPLDLLVNSSYFAIN >gi|223713594|gb|ACDM01000004.1| GENE 138 158956 - 159597 609 213 aa, chain + ## HITS:1 COG:ECs2873 KEGG:ns NR:ns ## COG: ECs2873 COG0572 # Protein_GI_number: 15832127 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Escherichia coli O157:H7 # 1 213 19 231 231 418 100.0 1e-117 MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE RVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRMKETVTVEPKKVIILEGI LLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFI EPSKQYADIIVPRGGKNRIAIDILKAKISQFFE >gi|223713594|gb|ACDM01000004.1| GENE 139 159689 - 160270 682 193 aa, chain + ## HITS:1 COG:ECs2872 KEGG:ns NR:ns ## COG: ECs2872 COG0717 # Protein_GI_number: 15832126 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 385 100.0 1e-107 MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDE VSAALDRVMSDEIVLDESEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMV HVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAARPYNRREDAKYR NQQGAVASRIDKD >gi|223713594|gb|ACDM01000004.1| GENE 140 160292 - 162145 1393 617 aa, chain + ## HITS:1 COG:asmA KEGG:ns NR:ns ## COG: asmA COG2982 # Protein_GI_number: 16130004 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Escherichia coli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gi|223713594|gb|ACDM01000004.1| GENE 141 162597 - 164180 1912 527 aa, chain - ## HITS:1 COG:yegH_2 KEGG:ns NR:ns ## COG: yegH_2 COG1253 # Protein_GI_number: 16130003 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli K12 # 232 527 1 296 296 573 99.0 1e-163 MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRDRARVTGLLLAMLMRLL LLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKATMELNERLEGKDSNNPTQR KGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAAVVIAISLMLMASKPLTQFVN SHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAIGFSVMIEALNQLAIFNRRRFLS ANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVDHGNQQIFNPQERRMIERVLNLNQR TVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHTRVVVTDGDDAEDLLGVVHVIDLLQQS LRGEPLNLRVLIRQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTET IAGNLPNEVEEIDARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLME YLQRIPKPGEEVQVGDYLLKTLQVESHRVQKVQIIPLHKDGEMEYEV >gi|223713594|gb|ACDM01000004.1| GENE 142 164923 - 165978 1074 351 aa, chain + ## HITS:1 COG:ECs2867 KEGG:ns NR:ns ## COG: ECs2867 COG1596 # Protein_GI_number: 15832121 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Escherichia coli O157:H7 # 1 351 29 379 379 696 100.0 0 MSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVG PGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDI TGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTA DWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQST LKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSL VMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW >gi|223713594|gb|ACDM01000004.1| GENE 143 165984 - 166427 470 147 aa, chain + ## HITS:1 COG:ECs2866 KEGG:ns NR:ns ## COG: ECs2866 COG0394 # Protein_GI_number: 15832120 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Escherichia coli O157:H7 # 1 147 1 147 147 296 100.0 1e-80 MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSL EGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKS RETFAAVYTLLERSARQWAQALNAEQV >gi|223713594|gb|ACDM01000004.1| GENE 144 166430 - 168592 2516 720 aa, chain + ## HITS:1 COG:wzc_1 KEGG:ns NR:ns ## COG: wzc_1 COG3206 # Protein_GI_number: 16130000 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Escherichia coli K12 # 1 480 13 492 492 916 99.0 0 MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADA LVQIEQSSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPI FGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDDKNYTLSSDGGFSARGQAGQML KKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDRE QIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNG RVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVL KPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARD SVKTIKGVKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGK TFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS IAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVG TTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK >gi|223713594|gb|ACDM01000004.1| GENE 145 168721 - 169560 722 279 aa, chain + ## HITS:1 COG:ECs2864 KEGG:ns NR:ns ## COG: ECs2864 COG0463 # Protein_GI_number: 15832118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 1 279 1 279 279 570 99.0 1e-162 MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDP RITYIHNDINSGACAVRNQAITLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLY ANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQVFTWAWRFKECLFDTELKAAQ DYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKKFSGYFHFYRKHKDKFDRASK KYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGIRGR >gi|223713594|gb|ACDM01000004.1| GENE 146 169563 - 170051 503 162 aa, chain + ## HITS:1 COG:ECs2863 KEGG:ns NR:ns ## COG: ECs2863 COG1045 # Protein_GI_number: 15832117 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 319 99.0 2e-87 MLEDLRANSWSLRPCCMVLAYRAAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEI QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGAN VIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK >gi|223713594|gb|ACDM01000004.1| GENE 147 170048 - 171265 1149 405 aa, chain + ## HITS:1 COG:ECs2862 KEGG:ns NR:ns ## COG: ECs2862 COG0438 # Protein_GI_number: 15832116 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli O157:H7 # 1 405 1 405 405 854 99.0 0 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTP RMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKV KNHKPDITLVWTLHDHWSVTGRCAFTDGCEGWKKGCQKCPTLNNYPPVKIDRAHQLVAGK RQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILADLPPVRETQG KPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKL MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEEDVLQ LVQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL >gi|223713594|gb|ACDM01000004.1| GENE 148 171240 - 172457 883 405 aa, chain + ## HITS:1 COG:no KEGG:B21_01951 NR:ns ## KEGG: B21_01951 # Name: wcaD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 405 1 405 405 646 100.0 0 MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFLERISVKKLMIALG IGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYL VVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFF ALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIK KKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVV RFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGD NRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITR >gi|223713594|gb|ACDM01000004.1| GENE 149 172468 - 173214 649 248 aa, chain + ## HITS:1 COG:ECs2860 KEGG:ns NR:ns ## COG: ECs2860 COG0463 # Protein_GI_number: 15832114 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 489 97.0 1e-138 MLLSIITVAFRNLAGIVKTHASLAHLAQADDISFEWIVVDGGSNDGTCEYLENLKGIYNL RFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQDAANFVRKLKVQKDNVMITGDAL LDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYK AGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSK TKALYNKS >gi|223713594|gb|ACDM01000004.1| GENE 150 173230 - 173778 341 182 aa, chain + ## HITS:1 COG:wcaF KEGG:ns NR:ns ## COG: wcaF COG0110 # Protein_GI_number: 16129994 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1 182 1 182 182 363 100.0 1e-101 MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRAFLLRLFGAKIGKNVVI RPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTI NATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVE TE >gi|223713594|gb|ACDM01000004.1| GENE 151 173805 - 174926 1355 373 aa, chain + ## HITS:1 COG:ECs2858 KEGG:ns NR:ns ## COG: ECs2858 COG1089 # Protein_GI_number: 15832112 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Escherichia coli O157:H7 # 1 373 1 373 373 767 100.0 0 MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC NGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKP GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLL KSHGYDVAIALES >gi|223713594|gb|ACDM01000004.1| GENE 152 174929 - 175385 474 152 aa, chain + ## HITS:1 COG:wcaG KEGG:ns NR:ns ## COG: wcaG COG0451 # Protein_GI_number: 16129992 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 152 1 152 321 311 98.0 4e-85 MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASESIDQVY LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA ESELLQGTLEPTNEPYAIAKIAGIKLCESYNR Prediction of potential genes in microbial genomes Time: Mon May 16 18:35:15 2011 Seq name: gi|223713593|gb|ACDM01000005.1| Escherichia sp. 4_1_40B cont1.5, whole genome shotgun sequence Length of sequence - 17430 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 4, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 + CDS 133 - 1356 1183 ## COG0438 Glycosyltransferase 2 1 Op 2 11/0.000 + CDS 1359 - 2795 1633 ## COG0836 Mannose-1-phosphate guanylyltransferase + Term 2849 - 2883 0.2 3 1 Op 3 4/0.000 + CDS 2897 - 4267 1701 ## COG1109 Phosphomannomutase 4 1 Op 4 7/0.000 + CDS 4322 - 5716 1438 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 5 1 Op 5 4/0.000 + CDS 5718 - 7196 1883 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 6 1 Op 6 7/0.000 + CDS 7268 - 8548 1392 ## COG2327 Uncharacterized conserved protein 7 1 Op 7 . + CDS 8545 - 9765 1056 ## COG0438 Glycosyltransferase 8 1 Op 8 . + CDS 9776 - 11170 1064 ## EcolC_1598 putative colanic acid biosynthesis protein + Prom 11174 - 11233 2.5 9 2 Op 1 3/0.000 + CDS 11328 - 12323 696 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 12432 - 12471 -0.8 + Prom 12467 - 12526 3.2 10 2 Op 2 . + CDS 12566 - 13459 939 ## COG1210 UDP-glucose pyrophosphorylase + Prom 13484 - 13543 5.0 11 3 Tu 1 . + CDS 13769 - 14788 388 ## COG1087 UDP-glucose 4-epimerase + Prom 15444 - 15503 3.9 12 4 Op 1 . + CDS 15584 - 15823 195 ## E2348C_2181 predicted glycosyl transferase 13 4 Op 2 14/0.000 + CDS 15850 - 16971 1149 ## COG1089 GDP-D-mannose dehydratase 14 4 Op 3 . + CDS 16974 - 17430 461 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|223713593|gb|ACDM01000005.1| GENE 1 133 - 1356 1183 407 aa, chain + ## HITS:1 COG:ECs2855 KEGG:ns NR:ns ## COG: ECs2855 COG0438 # Protein_GI_number: 15832109 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli O157:H7 # 1 407 1 407 407 805 99.0 0 MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKR EEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCTP GMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTI SRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADVDVDALRNQLGLPDNKKIILYSGNI GEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPA LLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAHTELGQLCETFPGIAVCVE PESVEALVAGICQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG >gi|223713593|gb|ACDM01000005.1| GENE 2 1359 - 2795 1633 478 aa, chain + ## HITS:1 COG:ZcpsB_1 KEGG:ns NR:ns ## COG: ZcpsB_1 COG0836 # Protein_GI_number: 15802529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 EDL933 # 1 341 1 341 341 672 99.0 0 MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVIC NEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADH VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQ FVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDLDLD FIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCH GDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGR HEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT IDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV >gi|223713593|gb|ACDM01000005.1| GENE 3 2897 - 4267 1701 456 aa, chain + ## HITS:1 COG:ECs2853 KEGG:ns NR:ns ## COG: ECs2853 COG1109 # Protein_GI_number: 15832107 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli O157:H7 # 1 456 1 456 456 941 99.0 0 MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAK GLQDAGVDVLDIGTSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGD TGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNG AAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADM GIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAA GGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGK TLGELVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFN LRSSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE >gi|223713593|gb|ACDM01000005.1| GENE 4 4322 - 5716 1438 464 aa, chain + ## HITS:1 COG:wcaJ KEGG:ns NR:ns ## COG: wcaJ COG2148 # Protein_GI_number: 16129987 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Escherichia coli K12 # 1 464 1 464 464 959 99.0 0 MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQ MLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYGLTS IGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDP KPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDV FTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAV KLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTS LDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGE TDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY >gi|223713593|gb|ACDM01000005.1| GENE 5 5718 - 7196 1883 492 aa, chain + ## HITS:1 COG:wzxC KEGG:ns NR:ns ## COG: wzxC COG2244 # Protein_GI_number: 16129986 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1 492 1 492 492 845 98.0 0 MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDF GIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLIGDVLNNPDLAPLIKTLSL AFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNS AVRTLLFGYFGRKIYCPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGA GVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPA LLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFN VFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWL PFYLSLPTLVISYALGIVLKGQMALGMLLAVQIAAGVLAFVVMIVLSRHPLVVEVKRQFC RSEKMKMLLRAG >gi|223713593|gb|ACDM01000005.1| GENE 6 7268 - 8548 1392 426 aa, chain + ## HITS:1 COG:wcaK KEGG:ns NR:ns ## COG: wcaK COG2327 # Protein_GI_number: 16129985 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 426 1 426 426 850 97.0 0 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLF LQMKQQNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDA IIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDAL ILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAIT LRELAPFDKRLGTTQQAYEKAFAGVVNRTLDEGYQVIALSTCTGIDSYNKDDRMVALNLR QHISDPARYHVVMDELNDLEMGKILGACQLTVGTRLHSAIISMNFSTPAIAINYEHKSAG IMQQLGLPEMAIDIRHLLDGSLQAMVADTLGHLPALNARLSEAVSRERQMGMRMVQSVLE RIGEAK >gi|223713593|gb|ACDM01000005.1| GENE 7 8545 - 9765 1056 406 aa, chain + ## HITS:1 COG:wcaL KEGG:ns NR:ns ## COG: wcaL COG0438 # Protein_GI_number: 16129984 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1 406 1 406 406 798 99.0 0 MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAARTRW LQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVSTPFYAD VFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLP ISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVA IEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARAL AQRLAAFSQLDTDELAPVVKRAREKVEHDFNQQVINRELASLLQAL >gi|223713593|gb|ACDM01000005.1| GENE 8 9776 - 11170 1064 464 aa, chain + ## HITS:1 COG:no KEGG:EcolC_1598 NR:ns ## KEGG: EcolC_1598 # Name: wcaM # Def: putative colanic acid biosynthesis protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 464 1 464 464 904 98.0 0 MPFKKLSRRTFLTASSALAFLHTPFARAIPARQSVNINDYNPHDWIASFKQAFSEGQTVV VPAGLVCDNINTGIFIPAGKTLHILGSLRGNGRGRFVLQDGSKVTGGEGGSIHNITLDVR GSDCTIKGLVMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGAN ITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYP ENQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKARNITPDFSKKAGIDNATVAIYGC DNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFRVNNIQLDNTHLAYKLRGIQISAGNA VSFVALTNIEMKRASLELHNKPQHLFMRNIKVMQESSVGPALSMNFDMRKDVRGVFMAKK ETLLSLANVHAVNEMGQSSVDIDRINHHIVNVEKINFRLPERRE >gi|223713593|gb|ACDM01000005.1| GENE 9 11328 - 12323 696 331 aa, chain + ## HITS:1 COG:ECs2847 KEGG:ns NR:ns ## COG: ECs2847 COG0451 # Protein_GI_number: 15832101 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 331 1 331 331 672 99.0 0 MNDNVLLIGASGFVGTRLLETAIADFNIKNLDKQQSHFYPEITQIGDVRDQQALDQALAG FDTVVLLAAEHRDDVSPTSLYYDVNVQGTRNVLASMEKNGVKNIIFTSSVAVYGLNKHNP DENHPHDPFNHYGKSKWQAEEVLREWYNKAPTERSLTIIRPTVIFGERNRGNVYNLLKQI AGGKFMMVGAGTNYKSMAYVGNIVEFIKYKLKNVAAGYEVYNYVDKPDLNMNQLVAEVEQ SLNKKIPSMHLPYPLGMLGGYCFDILSKITGKKYAVSSVRVKKFCATTQFDATKVHSSGF VAPYTLSQGLDRTLQYEFVHAKKDDITFVSE >gi|223713593|gb|ACDM01000005.1| GENE 10 12566 - 13459 939 297 aa, chain + ## HITS:1 COG:ECs2846 KEGG:ns NR:ns ## COG: ECs2846 COG1210 # Protein_GI_number: 15832100 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 297 1 297 297 583 99.0 1e-166 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASK NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPA IGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRTQVLAKRMPGDLSEYSVIQTK EPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLSADIWPELERTQPGAWGRIQLTD AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIEKLLSE >gi|223713593|gb|ACDM01000005.1| GENE 11 13769 - 14788 388 339 aa, chain + ## HITS:1 COG:BS_galE KEGG:ns NR:ns ## COG: BS_galE COG1087 # Protein_GI_number: 16080937 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Bacillus subtilis # 1 338 1 336 339 398 56.0 1e-111 MVIFVTGGAGYIGSHTILELLNNGHDVVSIDNFVNSSIESLKRVEQITNKKIISYQGDIR DKNLLDEIFSRHHIDAVIHFASLKSVGESKLKPLEYYSNNVGGTLVLLECMKRYNINKMI FSSSATVYGSNSIPPHTEDRRIGETTNPYGTSKFIIEIILSDYCDSDNNKSVIALRYFNP IGAHKSGMIGENPNGIPNNLVPYISKVAQNQLPVLNIYGNDYPTKDGTGVRDYIHVCDLA KGHVKALEYMFLNDVNYEAFNLGTGQGYSVLEIVKMFEIVTKKSIPVAICNRREGDVAES WASADLAHKKLSWKAEKNLKEMIEDVWRWQTNNPNGYKK >gi|223713593|gb|ACDM01000005.1| GENE 12 15584 - 15823 195 79 aa, chain + ## HITS:1 COG:no KEGG:E2348C_2181 NR:ns ## KEGG: E2348C_2181 # Name: wbiN # Def: predicted glycosyl transferase # Organism: E.coli_0127 # Pathway: not_defined # 1 79 260 338 338 161 100.0 5e-39 MSGLEAHTAAIPLLLSDVGGCFELIEGNGLLVENTEDDIGYKLDKIFDDYENYREQAIRA SGKFVIENYASAYKSIILG >gi|223713593|gb|ACDM01000005.1| GENE 13 15850 - 16971 1149 373 aa, chain + ## HITS:1 COG:ECs2858 KEGG:ns NR:ns ## COG: ECs2858 COG1089 # Protein_GI_number: 15832112 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Escherichia coli O157:H7 # 1 373 1 373 373 747 96.0 0 MAKVALITGITGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL HYGDLTDTSNLTRILCEVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC NGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM LQQEQPEDFVIATGVQYSVRQFVEMAAERVGIKLRFEGTGVDEKGIVVSVNGEDAPAVKP GDVIVKVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLL KSHGYDVAIALES >gi|223713593|gb|ACDM01000005.1| GENE 14 16974 - 17430 461 152 aa, chain + ## HITS:1 COG:wcaG KEGG:ns NR:ns ## COG: wcaG COG0451 # Protein_GI_number: 16129992 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 152 1 152 321 313 99.0 8e-86 MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVY LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA ESELLQGTLEPTNEPYAIAKIAGIKLCESYNR Prediction of potential genes in microbial genomes Time: Mon May 16 18:35:30 2011 Seq name: gi|223713592|gb|ACDM01000006.1| Escherichia sp. 4_1_40B cont1.6, whole genome shotgun sequence Length of sequence - 27688 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 13, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 55 - 114 2.5 1 1 Op 1 11/0.000 + CDS 150 - 1598 295 ## COG0836 Mannose-1-phosphate guanylyltransferase 2 1 Op 2 . + CDS 1602 - 2990 1256 ## COG1109 Phosphomannomutase + Term 3030 - 3064 1.4 3 2 Tu 1 . + CDS 3685 - 4212 -144 ## gi|37528730|gb|AAO37715.1| O-antigen flippase + Prom 4423 - 4482 10.4 4 3 Tu 1 . + CDS 4719 - 4919 203 ## gi|37528731|gb|AAO37716.1| putative glycosyltransferase + Term 4920 - 4968 -0.8 + Prom 5363 - 5422 9.3 5 4 Op 1 . + CDS 5669 - 6169 4 ## gi|56159893|gb|AAV80757.1| O-antigen polymerase 6 4 Op 2 . + CDS 6253 - 6996 109 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 7308 - 7367 5.5 7 5 Tu 1 . + CDS 7587 - 7916 228 ## E2348C_2171 predicted fucosyltransferase + Prom 7925 - 7984 7.7 8 6 Op 1 4/0.000 + CDS 8038 - 9444 1997 ## COG0362 6-phosphogluconate dehydrogenase + Term 9469 - 9509 4.1 + Prom 9513 - 9572 5.3 9 6 Op 2 2/0.500 + CDS 9693 - 10859 1079 ## COG1004 Predicted UDP-glucose 6-dehydrogenase + Term 10870 - 10902 2.1 + Prom 10871 - 10930 3.5 10 7 Tu 1 . + CDS 11005 - 11985 976 ## COG3765 Chain length determinant protein + Term 12002 - 12048 10.0 - Term 11993 - 12032 5.1 11 8 Op 1 24/0.000 - CDS 12082 - 12693 671 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 12 8 Op 2 23/0.000 - CDS 12687 - 13463 924 ## COG0107 Imidazoleglycerol-phosphate synthase 13 8 Op 3 25/0.000 - CDS 13445 - 14182 878 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 14 8 Op 4 18/0.000 - CDS 14182 - 14772 700 ## COG0118 Glutamine amidotransferase 15 8 Op 5 13/0.000 - CDS 14772 - 15839 1284 ## COG0131 Imidazoleglycerol-phosphate dehydratase 16 8 Op 6 19/0.000 - CDS 15839 - 16909 1148 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 17 8 Op 7 18/0.000 - CDS 16906 - 18210 1212 ## COG0141 Histidinol dehydrogenase 18 8 Op 8 . - CDS 18216 - 19115 1097 ## COG0040 ATP phosphoribosyltransferase + Prom 19653 - 19712 2.6 19 9 Op 1 2/0.500 + CDS 19737 - 20561 815 ## COG0451 Nucleoside-diphosphate-sugar epimerases 20 9 Op 2 4/0.000 + CDS 20607 - 21536 801 ## COG0583 Transcriptional regulator + Term 21625 - 21657 2.3 + Prom 21545 - 21604 4.2 21 9 Op 3 2/0.500 + CDS 21803 - 23161 1679 ## COG0531 Amino acid transporters + Term 23182 - 23221 7.5 + Prom 23169 - 23228 8.0 22 10 Op 1 10/0.000 + CDS 23340 - 24398 801 ## COG2391 Predicted transporter component 23 10 Op 2 . + CDS 24412 - 24639 325 ## COG0425 Predicted redox protein, regulator of disulfide bond formation - Term 24636 - 24675 5.8 24 11 Tu 1 . - CDS 24682 - 26106 1232 ## COG2925 Exonuclease I - Prom 26263 - 26322 3.3 25 12 Tu 1 . + CDS 26570 - 27466 208 ## COG0582 Integrase + Term 27578 - 27618 2.1 - Term 27181 - 27219 -0.6 26 13 Tu 1 . - CDS 27447 - 27638 131 ## ECH74115_2943 transcriptional regulator, AlpA family Predicted protein(s) >gi|223713592|gb|ACDM01000006.1| GENE 1 150 - 1598 295 482 aa, chain + ## HITS:1 COG:ECs2836_1 KEGG:ns NR:ns ## COG: ECs2836_1 COG0836 # Protein_GI_number: 15832090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 # 1 344 1 344 344 541 76.0 1e-154 MSDVPLIAVVMAGGTGSRLWPLSREHYPKQFLQLSGENTLLQSTLLRLSPLSCETPLVIT NEQHRFVVAEQLRQINQLSDNIILEPCGRNTAPAIALSAFTALKRNEQQDPILLVLAADH VINKTDVFCNAIKNSISIVEQGNILTFGIIPDYAETGYGYIEKGSIVKESQRGVGNTFYH VEQFVEKPNRSRAEEYISSGKYLWNSGMFMFKASVYLEELKKYRPDIYDICEKTISSSYH DLDFIRLSKDVFQNCPSESIDFAVMEKTKRCIVYPVDIGWNDVGSWQSLWDVSDKTPTGD VCKGDILTYNTKNNYIHSESALVAAVGVEDIVIVQTKDAILVSKKSEVQDVKKIVQMLKM QERSEYLSHREEFRPWGKFDAIEQGDRYKVKKIVVKPGEGLSLRMHHHRSEHWIVLSGTA KVTLNNKTFLVTANESVYIPLGATYSLENPGIIPLNLIEVSSGDYLGEDDIVRQKERYKI DD >gi|223713592|gb|ACDM01000006.1| GENE 2 1602 - 2990 1256 462 aa, chain + ## HITS:1 COG:ECs2853 KEGG:ns NR:ns ## COG: ECs2853 COG1109 # Protein_GI_number: 15832107 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli O157:H7 # 1 455 1 455 456 882 93.0 0 MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAK GLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGD TGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNG AAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADM GIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLIWNTVDVVSAA GGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGK TLGELVRDRMAAFPASGEINSTLEDPLCAIARVESYYANKAIEIDRTDGISMTFNGWRFN LRSSNTEPVVRLNVESRGDVAATKKYTGFILDLLNYKKSISS >gi|223713592|gb|ACDM01000006.1| GENE 3 3685 - 4212 -144 175 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|37528730|gb|AAO37715.1| ## NR: gi|37528730|gb|AAO37715.1| O-antigen flippase [Escherichia coli] # 1 175 226 400 400 259 100.0 6e-68 MNMFAKFYGVVAFGVFSVYYRFVAFPQQVISFSSSLIWINFRQVHVNNRVAAMQLLKRLF FIFTLLLIIWGGCVHFFIDKVVYLYSSKPLEYPGVLCFLNIMVCLMLLKDFSSIILNALT LYKEQMIMNALLCLLNVIFFFFYNETNFDTIYLIFVSLLTLMFVFVNLSLIRSRL >gi|223713592|gb|ACDM01000006.1| GENE 4 4719 - 4919 203 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|37528731|gb|AAO37716.1| ## NR: gi|37528731|gb|AAO37716.1| putative glycosyltransferase [Escherichia coli] # 1 66 169 234 234 95 100.0 1e-18 MTMADLKKNLIAKVHDESYLNYYYYYNKPLLLSELYSWPEKYGENKDAKIIMRDKERESW YGNIKK >gi|223713592|gb|ACDM01000006.1| GENE 5 5669 - 6169 4 166 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|56159893|gb|AAV80757.1| ## NR: gi|56159893|gb|AAV80757.1| O-antigen polymerase [Escherichia coli] # 1 166 277 442 466 276 99.0 4e-73 MLLVAILVTTISSLILNYRIGIEVNSGLLGIIFNPLLQQGASFETVYGALKYNEKILSCI SYYDYFFTNKDIGSCIDIARGVYFKEGGSFASSFYSELIYLGWIIGSVALLLFAFSLAFV QSCYEKIIKNSMNNKLAYTYRLIIFLALPNLIYFARSSLFDFITKV >gi|223713592|gb|ACDM01000006.1| GENE 6 6253 - 6996 109 247 aa, chain + ## HITS:1 COG:CAC2173 KEGG:ns NR:ns ## COG: CAC2173 COG0463 # Protein_GI_number: 15895442 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 2 216 4 223 333 136 37.0 4e-32 MISVIMAVHRYDKYVDISIDSILNQTYSDFELIIIANGGDCFEIAKQLKHYTELDNRVKI YTLEIGQLSFALNYAVTKCKYSIIARMDSDDVSLPLRLEKQYMYMLQNDLEMVGTGIRLI NENGEFIKELKYPNHNKINKILPFKNCFAHPTLMFKKDVILKQRGYCGGFNSEDYDLWLR ILNECPNIRWDNLSECLLNYRIHNKSTQKSALAYYECASYSLREFLKKRTITNFLSCLYH FCKALIK >gi|223713592|gb|ACDM01000006.1| GENE 7 7587 - 7916 228 109 aa, chain + ## HITS:1 COG:no KEGG:E2348C_2171 NR:ns ## KEGG: E2348C_2171 # Name: wbiQ # Def: predicted fucosyltransferase # Organism: E.coli_0127 # Pathway: not_defined # 1 109 191 299 299 120 51.0 2e-26 MDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSECEYSAIDMFLMSK CKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWINL >gi|223713592|gb|ACDM01000006.1| GENE 8 8038 - 9444 1997 468 aa, chain + ## HITS:1 COG:gnd KEGG:ns NR:ns ## COG: gnd COG0362 # Protein_GI_number: 16129970 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Escherichia coli K12 # 1 468 1 468 468 919 99.0 0 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQTFTEWNNGELSSYLIDITKDIFT KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS KVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWALNYGEIAKIF RAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPT FAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD >gi|223713592|gb|ACDM01000006.1| GENE 9 9693 - 10859 1079 388 aa, chain + ## HITS:1 COG:ECs2829 KEGG:ns NR:ns ## COG: ECs2829 COG1004 # Protein_GI_number: 15832083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Escherichia coli O157:H7 # 1 388 1 388 388 754 99.0 0 MKITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDEIH FNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP VGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIK QNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGN HYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAIVDANRTRKDFIADAILSRKPQVVG IYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQA DVIISNRMAEELRDVADKVYTRDLFGSD >gi|223713592|gb|ACDM01000006.1| GENE 10 11005 - 11985 976 326 aa, chain + ## HITS:1 COG:wzzB KEGG:ns NR:ns ## COG: wzzB COG3765 # Protein_GI_number: 16129968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli K12 # 1 326 13 338 338 556 97.0 1e-158 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIVLAIGYLAVAKEKWTSTA IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLT IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM IKHEATRPLVFSSNYYQTRQNLLDIDNLDVDKLDIHAYLYVMKPTLPIRRDSPKKAITLI LAVLLGGMVGAGIVLGRNALRNYNAK >gi|223713592|gb|ACDM01000006.1| GENE 11 12082 - 12693 671 203 aa, chain - ## HITS:1 COG:ZhisI_1 KEGG:ns NR:ns ## COG: ZhisI_1 COG0139 # Protein_GI_number: 15802505 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Escherichia coli O157:H7 EDL933 # 1 112 1 112 112 234 97.0 8e-62 MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTIESGKVTFFSRTKQR LWTKGETSGNFLNVVNITPDCDNDTLLLLANPIGPTCHKGTSSCFGDTTHQWLFLYQLEQ LLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHL LVLLQDQDLDLTTVIENLRKRHQ >gi|223713592|gb|ACDM01000006.1| GENE 12 12687 - 13463 924 258 aa, chain - ## HITS:1 COG:ECs2826 KEGG:ns NR:ns ## COG: ECs2826 COG0107 # Protein_GI_number: 15832080 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 258 1 258 258 519 100.0 1e-147 MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRV VDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRF GVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMN QDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN IGELKAYLATQGVEIRIC >gi|223713592|gb|ACDM01000006.1| GENE 13 13445 - 14182 878 245 aa, chain - ## HITS:1 COG:ECs2825 KEGG:ns NR:ns ## COG: ECs2825 COG0106 # Protein_GI_number: 15832079 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Escherichia coli O157:H7 # 1 245 2 246 246 462 98.0 1e-130 MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKR QIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSPDMVKGWFERFG ADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLA GSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTGVRGVIVGRALLEGKFTVKEAIA CWQNA >gi|223713592|gb|ACDM01000006.1| GENE 14 14182 - 14772 700 196 aa, chain - ## HITS:1 COG:hisH KEGG:ns NR:ns ## COG: hisH COG0118 # Protein_GI_number: 16129964 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Escherichia coli K12 # 1 196 1 196 196 417 100.0 1e-117 MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRER ELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR VYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQKDNFYGVQFHPE RSGAAGAKLLKNFLEM >gi|223713592|gb|ACDM01000006.1| GENE 15 14772 - 15839 1284 355 aa, chain - ## HITS:1 COG:hisB_2 KEGG:ns NR:ns ## COG: hisB_2 COG0131 # Protein_GI_number: 16129963 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Escherichia coli K12 # 149 355 1 207 207 431 99.0 1e-121 MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQKAGYKLVMITNQDGLG TQSFPQADFEGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAM DRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGEQLTKRDRYAHVVRNTKETQI DVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEINVKGDLYIDDHHTVEDTGLALG EALKIALGDKRGICRFGFVLPMDECLARCALDISGRPHLEYKAEFTYQRVGDLSTEMIEH FFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGDTLPSSKGVL >gi|223713592|gb|ACDM01000006.1| GENE 16 15839 - 16909 1148 356 aa, chain - ## HITS:1 COG:hisC KEGG:ns NR:ns ## COG: hisC COG0079 # Protein_GI_number: 16129962 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Escherichia coli K12 # 1 356 1 356 356 706 99.0 0 MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLNRYPECQP KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI GVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDLRTLLELTRGKAI VVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVI APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEISCVEQVFDSETNYI LARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALRAEQV >gi|223713592|gb|ACDM01000006.1| GENE 17 16906 - 18210 1212 434 aa, chain - ## HITS:1 COG:ECs2821 KEGG:ns NR:ns ## COG: ECs2821 COG0141 # Protein_GI_number: 15832075 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Escherichia coli O157:H7 # 1 434 1 434 434 782 98.0 0 MSFNTIIDWNSCTAKQQRQLLMRPAISASESITRTVNDILDSVKARGDDALREYSAKFDK ATVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQV TRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLCSPPPIADEILYAAQLCGVQD VFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVL VIADSGATPDFVASDLLSQAEHGPDSQVILLTPDADMARRVAEAVERQLAELPRAETARQ ALSASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDGITSAGSVFLGDWSPESAGD YASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLASAERLTAHK NAVTLRVNALKEQA >gi|223713592|gb|ACDM01000006.1| GENE 18 18216 - 19115 1097 299 aa, chain - ## HITS:1 COG:hisG KEGG:ns NR:ns ## COG: hisG COG0040 # Protein_GI_number: 16129960 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Escherichia coli K12 # 1 299 1 299 299 574 100.0 1e-164 MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPG LVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPL SLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEAN GLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAPTERLDE VIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME >gi|223713592|gb|ACDM01000006.1| GENE 19 19737 - 20561 815 274 aa, chain + ## HITS:1 COG:ECs2818 KEGG:ns NR:ns ## COG: ECs2818 COG0451 # Protein_GI_number: 15832072 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 274 1 274 274 528 100.0 1e-150 MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDS DDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQ GTVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTAPD GEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE >gi|223713592|gb|ACDM01000006.1| GENE 20 20607 - 21536 801 309 aa, chain + ## HITS:1 COG:ECs2817 KEGG:ns NR:ns ## COG: ECs2817 COG0583 # Protein_GI_number: 15832071 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 309 8 316 316 614 99.0 1e-176 MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHS VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLA QEEEPLNRRIIKQYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGY LPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASAWWRDEILANSAIAGVYA KSDDGKSAI >gi|223713592|gb|ACDM01000006.1| GENE 21 21803 - 23161 1679 452 aa, chain + ## HITS:1 COG:ECs2816 KEGG:ns NR:ns ## COG: ECs2816 COG0531 # Protein_GI_number: 15832070 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 452 3 454 454 816 100.0 0 MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALI AILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKIY FEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIVVLQVVLIAVILGMVVYGVFE GEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFL TALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTITVLAS GMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWRTPAMNIILVGAIALLAINFDLVMATA LINFGALVAFTFVNLSVISQFWIREKRNKTLKDHFQYLFLPMCGALTVGALWVNLEESSM VLGLIWAAIGLIYLACVTKSFRNPVPQYEDVA >gi|223713592|gb|ACDM01000006.1| GENE 22 23340 - 24398 801 352 aa, chain + ## HITS:1 COG:ECs2815 KEGG:ns NR:ns ## COG: ECs2815 COG2391 # Protein_GI_number: 15832069 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli O157:H7 # 1 352 1 352 352 621 98.0 1e-178 MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYVAKNNRMFYALLIAISVQSVGVFALI QAGLLTYEAGAFPWLGTVIGGYLFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMS AVMRSPHASGLNQTLQHYTTEHNSIADTFNLSVWPLVAVLLVITLWVVMKELKKPKLKVA TLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFL VAGDVKYINWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAG GCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN >gi|223713592|gb|ACDM01000006.1| GENE 23 24412 - 24639 325 75 aa, chain + ## HITS:1 COG:ECs2814 KEGG:ns NR:ns ## COG: ECs2814 COG0425 # Protein_GI_number: 15832068 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 75 1 75 75 124 100.0 6e-29 MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATEAIPQWAAEEGHAITDY QQIGDAAWSITVQKA >gi|223713592|gb|ACDM01000006.1| GENE 24 24682 - 26106 1232 474 aa, chain - ## HITS:1 COG:sbcB KEGG:ns NR:ns ## COG: sbcB COG2925 # Protein_GI_number: 16129952 # Func_class: L Replication, recombination and repair # Function: Exonuclease I # Organism: Escherichia coli K12 # 1 474 2 475 475 959 97.0 0 MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQP GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY AEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV >gi|223713592|gb|ACDM01000006.1| GENE 25 26570 - 27466 208 298 aa, chain + ## HITS:1 COG:STM2636 KEGG:ns NR:ns ## COG: STM2636 COG0582 # Protein_GI_number: 16765956 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 43 282 137 385 409 145 34.0 1e-34 MTVAQCLDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEE RDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIW LAIERSRASTSNKLLHQMLMLWGARLSELRLAKKTEFDLLENVWTVPKEHSKMGNVIRRP IFEQIKPFLEKAMTTYNDVLFPGEDISKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTL VTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKVYELHADKLFWHIRSISD >gi|223713592|gb|ACDM01000006.1| GENE 26 27447 - 27638 131 63 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_2943 NR:ns ## KEGG: ECH74115_2943 # Name: not_defined # Def: transcriptional regulator, AlpA family # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 63 1 63 63 126 100.0 3e-28 MTDTSLIPEKEVMNKLGVSSRQTIWNYTKRHGFPKPVRTHPKSYLREAVEGWILNGGVNQ KCS Prediction of potential genes in microbial genomes Time: Mon May 16 18:35:56 2011 Seq name: gi|223713591|gb|ACDM01000007.1| Escherichia sp. 4_1_40B cont1.7, whole genome shotgun sequence Length of sequence - 1783 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 6 - 368 189 ## EFER_0574 conserved hypothetical protein; CPS-53 (KpLE1) prophage 2 1 Op 2 . - CDS 359 - 895 382 ## COG1896 Predicted hydrolases of HD superfamily + Prom 1325 - 1384 4.6 3 2 Tu 1 . + CDS 1409 - 1696 92 ## SeD_A2291 hypothetical protein + Term 1736 - 1767 -0.1 Predicted protein(s) >gi|223713591|gb|ACDM01000007.1| GENE 1 6 - 368 189 120 aa, chain - ## HITS:1 COG:no KEGG:EFER_0574 NR:ns ## KEGG: EFER_0574 # Name: yfdS # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.fergusonii # Pathway: not_defined # 1 120 1 120 120 226 96.0 3e-58 MRMNVFEMEGFLRGRCVPRDLKVNETDAEYLARKFDALEAKCAAQENKVIPVSAELPPAN ESVLLFDANGEGWLIGWRSLWYTWEQKETGEWQWTFQVGDLENVNITHWAIMPKAPEAGA >gi|223713591|gb|ACDM01000007.1| GENE 2 359 - 895 382 178 aa, chain - ## HITS:1 COG:yfdR KEGG:ns NR:ns ## COG: yfdR COG1896 # Protein_GI_number: 16130293 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1 178 10 187 187 363 97.0 1e-100 MSFIKTFSGKHFYYDRINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ EFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADL IMLATERRDLGLDDGSFWPVLEGIPATEMFKVIPQAPGHAYGMFMERFNELSELRKCA >gi|223713591|gb|ACDM01000007.1| GENE 3 1409 - 1696 92 95 aa, chain + ## HITS:1 COG:no KEGG:SeD_A2291 NR:ns ## KEGG: SeD_A2291 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Dublin # Pathway: not_defined # 1 67 1 67 81 130 100.0 1e-29 MTFDEKELDNAINKIIVTSLFSCLSDTQQKQFYESAFNMIERCCFCDADELPEKIRKQLA DALRVRLYAVNLFVAGMTDVVWMPGDNYYLHRGMQ Prediction of potential genes in microbial genomes Time: Mon May 16 18:36:04 2011 Seq name: gi|223713590|gb|ACDM01000008.1| Escherichia sp. 4_1_40B cont1.8, whole genome shotgun sequence Length of sequence - 14992 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 6, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 250 - 735 -133 ## gi|256022303|ref|ZP_05436168.1| hypothetical protein E4_02919 - Prom 791 - 850 7.8 + Prom 2558 - 2617 3.9 2 2 Op 1 3/0.000 + CDS 2689 - 3732 884 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Prom 3768 - 3827 6.1 3 2 Op 2 4/0.000 + CDS 3851 - 4324 465 ## COG3449 DNA gyrase inhibitor + Term 4357 - 4403 -0.6 + Prom 4336 - 4395 2.5 4 2 Op 3 2/0.000 + CDS 4522 - 5580 938 ## COG1289 Predicted membrane protein + Prom 5588 - 5647 3.9 5 2 Op 4 . + CDS 5752 - 6081 524 ## COG2926 Uncharacterized protein conserved in bacteria + Term 6098 - 6132 6.9 - Term 6786 - 6824 5.0 6 3 Op 1 . - CDS 6979 - 7170 290 ## ECO103_2483 hypothetical protein 7 3 Op 2 . - CDS 7170 - 7604 438 ## EcSMS35_3208 antirestriction protein - Term 7642 - 7675 1.1 8 3 Op 3 . - CDS 7686 - 8507 528 ## SbBS512_E1123 hypothetical protein - Prom 8566 - 8625 1.8 - Term 8547 - 8584 8.5 9 4 Op 1 . - CDS 8728 - 9138 420 ## EcSMS35_1065 hypothetical protein 10 4 Op 2 . - CDS 9154 - 9642 502 ## G2583_2517 hypothetical protein - Prom 9731 - 9790 5.4 - Term 9918 - 9960 4.3 11 5 Op 1 . - CDS 9973 - 11043 685 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily 12 5 Op 2 . - CDS 11040 - 11945 507 ## ECH74115_1397 hypothetical protein 13 5 Op 3 . - CDS 11942 - 14338 1563 ## COG0699 Predicted GTPases (dynamin-related) - Prom 14433 - 14492 3.2 - Term 14386 - 14417 3.1 14 6 Tu 1 . - CDS 14556 - 14981 317 ## COG3596 Predicted GTPase Predicted protein(s) >gi|223713590|gb|ACDM01000008.1| GENE 1 250 - 735 -133 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256022303|ref|ZP_05436168.1| ## NR: gi|256022303|ref|ZP_05436168.1| hypothetical protein E4_02919 [Escherichia sp. 4_1_40B] # 1 161 199 359 359 263 99.0 3e-69 MPNYANDFFLFQRVIDIANEYNSSSYILRIFGNVTNFSSRNPLITDKSTLNITFMCYTIT GVTILSTFLLSIKAIRSNYKSDVRISFCYFLITIAFSISPLIQARYMAPLILMPTFYKCI SKKDVFICYMASIFISIILSLLYVYLGVYPEKAPVENFTIN >gi|223713590|gb|ACDM01000008.1| GENE 2 2689 - 3732 884 347 aa, chain + ## HITS:1 COG:ZdacD KEGG:ns NR:ns ## COG: ZdacD COG1686 # Protein_GI_number: 15802489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli O157:H7 EDL933 # 1 347 44 390 390 707 99.0 0 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQN FTTVQILHRRKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAP ISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA >gi|223713590|gb|ACDM01000008.1| GENE 3 3851 - 4324 465 157 aa, chain + ## HITS:1 COG:ECs2811 KEGG:ns NR:ns ## COG: ECs2811 COG3449 # Protein_GI_number: 15832065 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Escherichia coli O157:H7 # 1 157 1 157 157 318 100.0 2e-87 MNYEIKQEDKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPA EKLRCDTVVTVPNNFTLPENSEGVILTEISGGQYAVAVARVVGDDFAKPWYQFFNSLLQD SAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH >gi|223713590|gb|ACDM01000008.1| GENE 4 4522 - 5580 938 352 aa, chain + ## HITS:1 COG:yeeA KEGG:ns NR:ns ## COG: yeeA COG1289 # Protein_GI_number: 16129949 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 352 1 352 352 687 99.0 0 MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPESTWPLVTMVVIMGPIS FWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCAAAMFLCGWLALGKKPYQG LLIGVTLAIVVGSPTGEINTALWRSGDVILGSLLAMLFTGIWPQRAFIHWRIQLAKSLTE YNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQTINRN LVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEK LNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK >gi|223713590|gb|ACDM01000008.1| GENE 5 5752 - 6081 524 109 aa, chain + ## HITS:1 COG:ECs2809 KEGG:ns NR:ns ## COG: ECs2809 COG2926 # Protein_GI_number: 15832063 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 109 23 131 131 177 100.0 4e-45 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK >gi|223713590|gb|ACDM01000008.1| GENE 6 6979 - 7170 290 63 aa, chain - ## HITS:1 COG:no KEGG:ECO103_2483 NR:ns ## KEGG: ECO103_2483 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 63 1 63 63 109 100.0 3e-23 MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAEKGYSLRVVDDRDSTETPATYASPH QLL >gi|223713590|gb|ACDM01000008.1| GENE 7 7170 - 7604 438 144 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_3208 NR:ns ## KEGG: EcSMS35_3208 # Name: not_defined # Def: antirestriction protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 108 1 108 159 205 96.0 5e-52 MKTVSQNTPTIYSATTPENNPPQLVASLVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMD RLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGTRSQLINSIDILRARRA TGLMTRDNYRTVNNITLGKYPEAK >gi|223713590|gb|ACDM01000008.1| GENE 8 7686 - 8507 528 273 aa, chain - ## HITS:1 COG:no KEGG:SbBS512_E1123 NR:ns ## KEGG: SbBS512_E1123 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 3 273 45 315 315 530 100.0 1e-149 MRLASRFGYAANQIRRDRPLTHEELIRHVPSIFGEDRHTSRSERYAYIPTITVLENLQRE GFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSHDGTSSYQMLPGYF RFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPAR QALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKG KRIHTRAIHSIDTDIKLNRALWVMAETMLESLR >gi|223713590|gb|ACDM01000008.1| GENE 9 8728 - 9138 420 136 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_1065 NR:ns ## KEGG: EcSMS35_1065 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 136 1 136 136 259 100.0 2e-68 MKTFIKTLLVAVTILFSVFATAKQVKLPNNIKYVNTTEAFSCTEIDGMNCQTKNQFNYKD NSYVFVLERGGAWCYDYTVSVVNLKTGKAQMIEYGDNQLCSGSNKPFFEIKNGVPTVGVI DTSGKPVVVAQDKLKI >gi|223713590|gb|ACDM01000008.1| GENE 10 9154 - 9642 502 162 aa, chain - ## HITS:1 COG:no KEGG:G2583_2517 NR:ns ## KEGG: G2583_2517 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 162 102 263 263 315 100.0 4e-85 MKRLHTLMLFLAVLFTGFNFNAEAATVKQALSCNPEAWAEQPGACPSTYELYEGDATYKA AIDKALKPVGLSGMFGKGGYMDGPGGGITPVNINGTVWFQGDGCKANTCGWDFIVTLYNP KTHEVVGYRYFGLDDPAYLVWFGEIGVHEFAYLVKNYVAAVN >gi|223713590|gb|ACDM01000008.1| GENE 11 9973 - 11043 685 356 aa, chain - ## HITS:1 COG:ECs1399 KEGG:ns NR:ns ## COG: ECs1399 COG1752 # Protein_GI_number: 15830653 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 1 356 1 356 356 678 99.0 0 MSTEMKTGLVLSGGGAVGAYQAGVVKALAECGTQISMVSGASIGAFNGAIIAASPDLSEA AVRLEALWDHLGNNQVLSVNRLVYFSLLKKLFQAMNLCQIPGRAGALLTTLLRHISTING FDNLMAQPLLSDEPLTALMDHYLDTDALADGLPLYVSLYPTEGGMQDIIDCIRAELGVGT TKNAVFQHIQSLPRGQQKEALLASAALPLLFRPREVQGTMFGDGGMGGWRNMQGNTPVTP LVDAGCNMVIVTHLSDGSLWDRQAFPDTTILEIRPRKRLKYAGDGGNSGGLLSFTSAHTD AWRQQGYEDTMLAMEHIRKPLAARQALTRSEAVLQKSLDITEEADLALRNAMARIK >gi|223713590|gb|ACDM01000008.1| GENE 12 11040 - 11945 507 301 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_1397 NR:ns ## KEGG: ECH74115_1397 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 301 1 301 301 581 99.0 1e-164 MTSPFIQQIADNRVCQVLTCLPEKFVVDFANGIDVAQEHIRTAGERTFFRRLKEGLTGEG AARQNAINASLAQGVEASLRWLTEMTTSLATTNYAITQVNDRVSSLVSDTARLAHYSADT REQLLTLADQVHHKLNHLEEKLHRVDQVQRAQLHLEQIFSWWSAGRYASFSPAGRCYVAL EELRWGAFGDVIRQGETGQVNQLLDILRHKALTQMAQESGGSATVRLNTLDWLGGQGREQ ADNEWHDAINWLGDWCSEEQHPVIWSTTQAAEHLPVRMPRLCSAERLSESMVDEIFQKGA A >gi|223713590|gb|ACDM01000008.1| GENE 13 11942 - 14338 1563 798 aa, chain - ## HITS:1 COG:Z1212_1 KEGG:ns NR:ns ## COG: Z1212_1 COG0699 # Protein_GI_number: 15800733 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Escherichia coli O157:H7 EDL933 # 1 274 2 275 275 507 96.0 1e-143 MHEKNIALLCDEADRLLQLNINLLRQMVEEPDVLSDSKNENRLLFDKQKALKRIEELEGE QIKTARREMVLAVVGTMKAGKSTTINAIVGQEILPNRNRPMTSVPTLIRHVPGKTEPVLH LEHIQPVRNLLITLQEKLATPAGQQVAQTLQQTGDTRELLDILTDDGWLKNEYHGEEEIF TGLASLNDLVRLAAAMGTEFPFDEYAEVQKLPVIDVEFSHLVGMDACQGTLTLLDTPGPN EAGQPQMEVMMRDQLQKASAVLAVMDYTQMNSKADEDVRKELNAIADVSAGRLFVLVNKF DEKDRNGDGADAVRQKVPAMLNSDVLPASRVYPGSSRQAYLANRALHELRKNGTLPVDEA WVDDFIRGAFGCMKKEYVCKDSELATEGATDLWEGSLIDQLITEVIQSSHSRAAALAVDS AAAKLMQNAENISEYLLLRHQGLQQSIQSLQSHITSLLADIREIADCQEQMTTDVRMAME EIDTKTRELLTGVCTSLEEELNDYFRSGKRKEQQMLEEEDAEQRRSQSGLWGKISQWSGI NNQGREDYRKRDFAPDSPEIKFSDRREALELMTQIESTVTSLHREAEAQFRPELEKIVSG IETGFRGTALYATENIAGRINARLEDEGFTVKISFPAVSQLQTRLAVKINLSALMEERTE TVTRRRRQSGVWGTVCRWFGTSDLGWENYDEDVSRSVININKVREEVMSLTRAYFGELQA SIEQDINQPVRQEIDAFFCAFREKVEQLRNTLIQSSEDHKRDQQAQERLTGRLQALNERV PELITDSKALREELETML >gi|223713590|gb|ACDM01000008.1| GENE 14 14556 - 14981 317 141 aa, chain - ## HITS:1 COG:yeeP KEGG:ns NR:ns ## COG: yeeP COG3596 # Protein_GI_number: 16129940 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 141 96 236 236 256 97.0 6e-69 MVMQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHRVVAVSARTGWELDTL VSALMTALPDHAASPLMTRLQDELRTESVRSQAREQFTGAVDRIFDTAESVCIASVARTV LRAVRDSVVSVARAVWNWIFF Prediction of potential genes in microbial genomes Time: Mon May 16 18:36:30 2011 Seq name: gi|223713589|gb|ACDM01000009.1| Escherichia sp. 4_1_40B cont1.9, whole genome shotgun sequence Length of sequence - 6586 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 19 - 1170 226 ## EC55989_2250 hypothetical protein 2 2 Op 1 . - CDS 3567 - 4169 539 ## ECS88_2083 hypothetical protein - Term 4184 - 4212 0.5 3 2 Op 2 . - CDS 4263 - 4469 314 ## COG3311 Predicted transcriptional regulator - Prom 4505 - 4564 1.6 4 3 Tu 1 . - CDS 5596 - 5796 106 ## ECO103_3574 hypothetical protein - Prom 5830 - 5889 4.0 5 4 Tu 1 . + CDS 5996 - 6565 493 ## ECS88_2076 hypothetical protein Predicted protein(s) >gi|223713589|gb|ACDM01000009.1| GENE 1 19 - 1170 226 383 aa, chain - ## HITS:1 COG:no KEGG:EC55989_2250 NR:ns ## KEGG: EC55989_2250 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 383 5 387 387 752 99.0 0 MGKELDDICTSCPYIDAVKRHKQQLGAIEEYTQWLKKEPRASYFFLFQLYTRIHNTFFSQ KQQLPFTPGGTHCPEPDVTLRDLTLSPGYHSDYAPQPIPEMDSSAVVPPTNENTSPPEDT PDNTPAGGNTGQAEKTRNAGLTPIPEKRSGMPPEHLRFATGFPSQPKIAGPREKPMRTVH PDKIYREIIWFCSSYLLKSGPEATRTIINSVFSEWASINNDYPSPFSWVDSRDSEQCDWL WNAMQVRCVGTPLNPLTPEQKYWFACATFDNWEGWNEQQVQFLLESNPRRNRAKFTQVSF QAPRIQHKAILLDELKSAREQQKRRDERADGSVPLKLSGKIHKQLESIARSRGVLPKKLL NEMIEQAYHDLVATRQNSQIDSR >gi|223713589|gb|ACDM01000009.1| GENE 2 3567 - 4169 539 200 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2083 NR:ns ## KEGG: ECS88_2083 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 200 6 205 205 405 100.0 1e-112 MKQQYQTRYELLHENYQKWLTGFTRHAVSWGVCHPNIYYFHNLTPGWVSFNGEKPEIAIV PQSLHRLIYGPDKRSSPSLDDDLVVNLCTSEHLLVHHPMLEGILLSECERLKQHSLANKL ISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTKNLKHKSEKDLEQWIIARQGQSEPLT NLMDQYVLMAYRTSVDAAHS >gi|223713589|gb|ACDM01000009.1| GENE 3 4263 - 4469 314 68 aa, chain - ## HITS:1 COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 9 58 15 64 65 75 66.0 3e-14 MATPVSLMDDQMVDMAFITQLTGLTDKWFDKLIKDGGFPAPIKMGRSSRWLKSEVEAWLQ ARIAQSRL >gi|223713589|gb|ACDM01000009.1| GENE 4 5596 - 5796 106 66 aa, chain - ## HITS:1 COG:no KEGG:ECO103_3574 NR:ns ## KEGG: ECO103_3574 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 63 1 63 64 86 85.0 4e-16 MVIRKKKCRDCGNAITHNTVCCPYCGSVDPFGYYRNTDRIVTILLALIIVVLLTTVSVSV YILCSW >gi|223713589|gb|ACDM01000009.1| GENE 5 5996 - 6565 493 189 aa, chain + ## HITS:1 COG:no KEGG:ECS88_2076 NR:ns ## KEGG: ECS88_2076 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 189 13 201 201 390 100.0 1e-107 MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRFPDVPAATDAAVISRFINALKARID AYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVNRDTWCRAGDYRAPGSLAG MIKQAWCSALGVDVGCHATLVHFPAWPAVWLERDDDTGFQQVLERADYLAKEHTKAHCTG ERNFGCSRS Prediction of potential genes in microbial genomes Time: Mon May 16 18:38:50 2011 Seq name: gi|223713588|gb|ACDM01000010.1| Escherichia sp. 4_1_40B cont1.10, whole genome shotgun sequence Length of sequence - 376982 bp Number of predicted genes - 354, with homology - 352 Number of transcription units - 200, operones - 72 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 786 - 1154 171 ## EC55989_2240 putative transposase, ISL3 family 2 2 Op 1 1/0.956 - CDS 1806 - 2840 923 ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold 3 2 Op 2 1/0.956 - CDS 2843 - 3808 739 ## COG3238 Uncharacterized protein conserved in bacteria - Term 3822 - 3855 3.1 4 2 Op 3 2/0.912 - CDS 3865 - 4623 767 ## COG5426 Uncharacterized membrane protein - Prom 4656 - 4715 3.4 5 3 Tu 1 . - CDS 4735 - 5847 397 ## COG0524 Sugar kinases, ribokinase family - Prom 5934 - 5993 6.8 6 4 Tu 1 . - CDS 6043 - 6159 90 ## COG3436 Transposase and inactivated derivatives + Prom 7284 - 7343 3.6 7 5 Op 1 . + CDS 7468 - 7602 63 ## ECP_1964 putative thioesterase 8 5 Op 2 8/0.029 + CDS 7592 - 8824 505 ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase 9 5 Op 3 . + CDS 8809 - 9453 329 ## COG1475 Predicted transcriptional regulators + Term 9525 - 9560 -0.2 - Term 9746 - 9790 -0.8 10 6 Op 1 5/0.250 - CDS 9824 - 11002 389 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 11 6 Op 2 . - CDS 11029 - 11970 265 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 12003 - 12062 8.6 + Prom 12868 - 12927 4.0 12 7 Tu 1 . + CDS 13013 - 13177 78 ## EcSMS35_1129 hypothetical protein + Prom 13488 - 13547 6.1 13 8 Op 1 8/0.029 + CDS 13645 - 14187 440 ## COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 14 8 Op 2 11/0.029 + CDS 14184 - 14927 862 ## COG0368 Cobalamin-5-phosphate synthase 15 8 Op 3 4/0.500 + CDS 14939 - 16018 710 ## COG2038 NaMN:DMB phosphoribosyltransferase 16 8 Op 4 3/0.706 + CDS 16083 - 17015 636 ## COG1376 Uncharacterized protein conserved in bacteria + Term 17036 - 17078 6.2 - TRNA 17071 - 17146 87.1 # Asn GTT 0 0 + Prom 17197 - 17256 4.0 17 9 Tu 1 9/0.029 + CDS 17472 - 18389 493 ## COG0583 Transcriptional regulator + Prom 18399 - 18458 4.8 18 10 Op 1 1/0.956 + CDS 18563 - 19441 614 ## COG0583 Transcriptional regulator + Term 19449 - 19477 0.6 - TRNA 19479 - 19554 87.1 # Asn GTT 0 0 + Prom 19657 - 19716 2.9 19 10 Op 2 . + CDS 19748 - 21202 826 ## COG0534 Na+-driven multidrug efflux pump + Term 21325 - 21391 30.0 + TRNA 21303 - 21378 87.1 # Asn GTT 0 0 - Term 21783 - 21819 4.2 20 11 Tu 1 . - CDS 21832 - 22548 714 ## COG0217 Uncharacterized conserved protein - Prom 22608 - 22667 9.9 - Term 22791 - 22835 10.5 21 12 Op 1 . - CDS 22891 - 24345 1173 ## COG0775 Nucleoside phosphorylase - Prom 24376 - 24435 4.3 - Term 24401 - 24446 1.5 22 12 Op 2 . - CDS 24447 - 25763 1019 ## COG0477 Permeases of the major facilitator superfamily - Prom 25789 - 25848 4.6 23 13 Tu 1 . + CDS 26078 - 27130 279 ## COG0859 ADP-heptose:LPS heptosyltransferase 24 14 Op 1 . - CDS 27258 - 27905 52 ## APECO1_1065 putative autotransporter 25 14 Op 2 . - CDS 27954 - 29216 447 ## APECO1_1065 putative autotransporter 26 14 Op 3 . - CDS 29252 - 29422 60 ## ECIAI39_1068 hypothetical protein 27 14 Op 4 . - CDS 29349 - 30098 461 ## APECO1_1064 hypothetical protein - Prom 30161 - 30220 3.2 - Term 30705 - 30737 3.2 28 15 Tu 1 . - CDS 30749 - 32770 1649 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 32797 - 32856 5.2 29 16 Op 1 2/0.912 - CDS 32901 - 34478 997 ## COG1021 Peptide arylation enzymes 30 16 Op 2 2/0.912 - CDS 34482 - 35285 206 ## COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 31 16 Op 3 2/0.912 - CDS 35282 - 36382 442 ## COG4693 Oxidoreductase (NAD-binding), involved in siderophore biosynthesis 32 16 Op 4 7/0.044 - CDS 36379 - 45858 5763 ## COG3321 Polyketide synthase modules and related proteins 33 16 Op 5 2/0.912 - CDS 45946 - 52053 3464 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 52095 - 52154 5.2 - Term 52169 - 52211 12.5 34 17 Tu 1 . - CDS 52244 - 53203 509 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 53278 - 53337 3.5 + Prom 53237 - 53296 3.0 35 18 Op 1 35/0.000 + CDS 53460 - 55172 194 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 36 18 Op 2 3/0.706 + CDS 55159 - 56961 218 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 37 18 Op 3 1/0.956 + CDS 56954 - 58234 967 ## COG0477 Permeases of the major facilitator superfamily 38 18 Op 4 . + CDS 58262 - 59566 1173 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Term 59694 - 59724 4.3 39 19 Op 1 . - CDS 59760 - 60986 371 ## PROTEIN SUPPORTED gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 - TRNA 61184 - 61259 87.1 # Asn GTT 0 0 - Term 61214 - 61252 -0.8 40 19 Op 2 . - CDS 61360 - 62157 315 ## COG3228 Uncharacterized protein conserved in bacteria - Prom 62281 - 62340 80.3 + TRNA 62251 - 62340 75.5 # Ser CGA 0 0 - Term 62625 - 62660 2.3 41 20 Tu 1 . - CDS 62910 - 63440 263 ## COG3038 Cytochrome B561 - Prom 63537 - 63596 3.9 - Term 63648 - 63692 9.1 42 21 Tu 1 . - CDS 63783 - 64454 446 ## COG3443 Predicted periplasmic or secreted protein - Prom 64583 - 64642 5.2 43 22 Op 1 13/0.015 - CDS 64690 - 65325 460 ## COG2717 Predicted membrane protein 44 22 Op 2 3/0.706 - CDS 65326 - 66273 854 ## COG2041 Sulfite oxidase and related enzymes - Prom 66329 - 66388 3.1 45 23 Tu 1 . - CDS 66439 - 66852 292 ## COG2351 Transthyretin-like protein - Prom 66897 - 66956 5.2 + Prom 66800 - 66859 4.8 46 24 Tu 1 . + CDS 66937 - 67656 169 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 67998 - 68057 3.2 47 25 Tu 1 . + CDS 68112 - 69014 290 ## COG0642 Signal transduction histidine kinase + Term 69044 - 69089 1.3 - Term 69032 - 69076 9.4 48 26 Tu 1 . - CDS 69112 - 69963 774 ## COG0693 Putative intracellular protease/amidase - Term 70470 - 70512 8.1 49 27 Tu 1 . - CDS 70556 - 71671 1250 ## COG3203 Outer membrane protein (porin) - Prom 71763 - 71822 8.6 + Prom 72029 - 72088 9.7 50 28 Op 1 . + CDS 72322 - 72603 322 ## SSON_2020 hypothetical protein 51 28 Op 2 4/0.500 + CDS 72643 - 73338 538 ## COG1418 Predicted HD superfamily hydrolase 52 28 Op 3 6/0.118 + CDS 73405 - 74823 1312 ## COG0270 Site-specific DNA methylase 53 28 Op 4 . + CDS 74804 - 75274 477 ## COG3727 DNA G:T-mismatch repair endonuclease 54 29 Tu 1 . - CDS 75263 - 76183 963 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 76209 - 76268 5.0 + Prom 76201 - 76260 4.2 55 30 Op 1 3/0.706 + CDS 76362 - 77273 1153 ## COG2354 Uncharacterized protein conserved in bacteria 56 30 Op 2 . + CDS 77352 - 77534 185 ## COG5475 Uncharacterized small protein + Prom 77623 - 77682 4.5 57 31 Op 1 . + CDS 77723 - 78640 710 ## JW5832 predicted diguanylate cyclase 58 31 Op 2 . + CDS 78644 - 79399 646 ## COG2199 FOG: GGDEF domain + Term 79572 - 79608 3.7 59 32 Tu 1 . - CDS 79396 - 80211 735 ## COG3769 Predicted hydrolase (HAD superfamily) - Prom 80234 - 80293 2.2 60 33 Tu 1 . - CDS 80510 - 80737 292 ## G2583_2404 hypothetical protein - Prom 80796 - 80855 4.2 61 34 Tu 1 . + CDS 80900 - 81088 324 ## LF82_0529 protein DsrB + Term 81180 - 81225 4.0 62 35 Tu 1 . - CDS 81132 - 81755 414 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 81950 - 82009 2.8 63 36 Op 1 17/0.000 - CDS 82045 - 82830 760 ## COG1684 Flagellar biosynthesis pathway, component FliR 64 36 Op 2 16/0.000 - CDS 82839 - 83108 432 ## COG1987 Flagellar biosynthesis pathway, component FliQ 65 36 Op 3 6/0.118 - CDS 83118 - 83855 706 ## COG1338 Flagellar biosynthesis pathway, component FliP 66 36 Op 4 6/0.118 - CDS 83855 - 84220 262 ## COG3190 Flagellar biogenesis protein 67 36 Op 5 20/0.000 - CDS 84223 - 84636 543 ## COG1886 Flagellar motor switch/type III secretory pathway protein 68 36 Op 6 13/0.015 - CDS 84633 - 85637 1052 ## COG1868 Flagellar motor switch protein 69 36 Op 7 7/0.044 - CDS 85642 - 86106 514 ## COG1580 Flagellar basal body-associated protein - Prom 86139 - 86198 2.2 70 37 Op 1 8/0.029 - CDS 86211 - 87338 790 ## COG3144 Flagellar hook-length control protein 71 37 Op 2 12/0.015 - CDS 87335 - 87778 506 ## COG2882 Flagellar biosynthesis chaperone 72 37 Op 3 13/0.015 - CDS 87797 - 89170 1527 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase 73 37 Op 4 15/0.015 - CDS 89170 - 89856 822 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 74 37 Op 5 19/0.000 - CDS 89849 - 90844 1288 ## COG1536 Flagellar motor switch protein 75 37 Op 6 . - CDS 90837 - 92495 1532 ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein - Prom 92581 - 92640 2.2 + Prom 92627 - 92686 3.6 76 38 Tu 1 . + CDS 92710 - 93024 427 ## COG1677 Flagellar hook-basal body protein + Term 93193 - 93238 3.7 + Prom 93284 - 93343 1.9 77 39 Tu 1 . + CDS 93368 - 93700 321 ## COG2076 Membrane transporters of cations and cationic drugs + Term 93788 - 93814 -0.6 + Prom 93703 - 93762 6.9 78 40 Tu 1 . + CDS 93869 - 94420 93 ## COG1881 Phospholipid-binding protein 79 41 Tu 1 . - CDS 94554 - 94802 113 ## - Prom 94871 - 94930 2.8 80 42 Tu 1 . - CDS 95384 - 95908 -57 ## COG1943 Transposase and inactivated derivatives - Prom 96038 - 96097 1.5 + Prom 95871 - 95930 5.1 81 43 Tu 1 . + CDS 95991 - 96260 85 ## COG0675 Transposase and inactivated derivatives - Term 96111 - 96141 0.3 82 44 Tu 1 . - CDS 96142 - 96639 308 ## COG2135 Uncharacterized conserved protein - Prom 96659 - 96718 2.7 83 45 Op 1 10/0.029 - CDS 96748 - 96981 349 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 84 45 Op 2 . - CDS 96978 - 98183 1462 ## COG2391 Predicted transporter component - Prom 98221 - 98280 3.9 + Prom 98212 - 98271 6.7 85 46 Tu 1 . + CDS 98370 - 98783 519 ## SDY_1087 hypothetical protein + Term 98791 - 98825 5.0 - Term 98777 - 98811 5.0 86 47 Op 1 . - CDS 98817 - 100304 1510 ## COG0366 Glycosidases - Term 100325 - 100374 -0.9 87 47 Op 2 . - CDS 100382 - 100747 474 ## ECIAI39_1129 flagellar biosynthesis protein FliT 88 47 Op 3 15/0.015 - CDS 100747 - 101157 437 ## COG1516 Flagellin-specific chaperone FliS 89 47 Op 4 . - CDS 101172 - 102584 1437 ## COG1345 Flagellar capping protein - Prom 102798 - 102857 2.6 + Prom 102686 - 102745 3.8 90 48 Tu 1 . + CDS 102839 - 104332 1545 ## COG1344 Flagellin and related hook-associated proteins + Term 104354 - 104381 1.5 + Prom 104409 - 104468 3.0 91 49 Op 1 . + CDS 104498 - 105217 825 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 92 49 Op 2 . + CDS 105266 - 105814 255 ## APECO1_962 flagella biosynthesis protein FliZ + Prom 105818 - 105877 4.0 93 49 Op 3 2/0.912 + CDS 105902 - 106702 1298 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 106712 - 106765 3.9 + Prom 106720 - 106779 8.0 94 50 Op 1 1/0.956 + CDS 106807 - 107793 1195 ## COG2515 1-aminocyclopropane-1-carboxylate deaminase 95 50 Op 2 34/0.000 + CDS 107808 - 108476 721 ## COG0765 ABC-type amino acid transport system, permease component 96 50 Op 3 5/0.250 + CDS 108473 - 109225 660 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 109371 - 109419 5.2 + Prom 109317 - 109376 7.7 97 51 Tu 1 . + CDS 109491 - 110177 430 ## COG2771 DNA-binding HTH domain-containing proteins + Term 110211 - 110251 4.2 - Term 110197 - 110237 8.0 98 52 Tu 1 . - CDS 110245 - 110469 382 ## ECDH10B_2056 hypothetical protein - Prom 110660 - 110719 5.5 + Prom 110825 - 110884 5.2 99 53 Op 1 3/0.706 + CDS 110928 - 111584 539 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 100 53 Op 2 9/0.029 + CDS 111647 - 113413 1642 ## COG0322 Nuclease subunit of the excinuclease complex 101 53 Op 3 1/0.956 + CDS 113470 - 114018 264 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + TRNA 114170 - 114245 93.7 # Gly GCC 0 0 + TRNA 114300 - 114373 51.5 # Cys GCA 0 0 + TRNA 114386 - 114472 71.6 # Leu TAA 0 0 + Prom 114527 - 114586 2.9 102 54 Tu 1 . + CDS 114668 - 115333 756 ## COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA + Term 115338 - 115391 3.6 - Term 115331 - 115372 2.5 103 55 Tu 1 . - CDS 115395 - 116573 1198 ## COG0814 Amino acid permeases - Prom 116695 - 116754 6.6 + Prom 116665 - 116724 6.2 104 56 Tu 1 . + CDS 116797 - 117036 321 ## SSON_1212 hypothetical protein - Term 117032 - 117066 6.6 105 57 Tu 1 . - CDS 117074 - 117571 667 ## COG1528 Ferritin-like protein - Prom 117605 - 117664 7.9 106 58 Tu 1 . + CDS 118529 - 118780 284 ## B21_01860 hypothetical protein + Term 118786 - 118825 7.4 - Term 118770 - 118817 7.9 107 59 Tu 1 . - CDS 118859 - 119362 483 ## COG1528 Ferritin-like protein - Prom 119542 - 119601 6.8 + Prom 119918 - 119977 4.3 108 60 Op 1 16/0.000 + CDS 120159 - 121148 1233 ## COG1879 ABC-type sugar transport system, periplasmic component 109 60 Op 2 21/0.000 + CDS 121218 - 122732 183 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 110 60 Op 3 1/0.956 + CDS 122747 - 123733 1141 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components + Term 123772 - 123809 7.0 + Prom 123786 - 123845 3.6 111 61 Op 1 8/0.029 + CDS 123900 - 124700 698 ## COG1877 Trehalose-6-phosphatase 112 61 Op 2 . + CDS 124675 - 126099 1260 ## COG0380 Trehalose-6-phosphate synthase - Term 126025 - 126054 2.5 113 62 Tu 1 . - CDS 126106 - 126534 396 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Prom 127034 - 127093 5.4 114 63 Op 1 . + CDS 127314 - 127664 272 ## EC55989_2071 transcriptional activator FlhD 115 63 Op 2 . + CDS 127667 - 128245 412 ## ECSP_2465 transcriptional activator FlhC + Term 128272 - 128309 7.2 116 64 Op 1 19/0.000 + CDS 128372 - 129259 1021 ## COG1291 Flagellar motor component 117 64 Op 2 5/0.250 + CDS 129256 - 130182 653 ## COG1360 Flagellar motor protein 118 64 Op 3 20/0.000 + CDS 130193 - 132151 1642 ## COG0643 Chemotaxis protein histidine kinase and related kinases 119 64 Op 4 17/0.000 + CDS 132172 - 132675 594 ## COG0835 Chemotaxis signal transduction protein + Term 132701 - 132739 4.5 + Prom 132715 - 132774 5.0 120 64 Op 5 13/0.015 + CDS 132820 - 134481 1461 ## COG0840 Methyl-accepting chemotaxis protein 121 64 Op 6 9/0.029 + CDS 134527 - 136128 1539 ## COG0840 Methyl-accepting chemotaxis protein 122 64 Op 7 13/0.015 + CDS 136147 - 137007 613 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 123 64 Op 8 18/0.000 + CDS 137010 - 138059 892 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 124 64 Op 9 8/0.029 + CDS 138074 - 138463 499 ## COG0784 FOG: CheY-like receiver 125 64 Op 10 4/0.500 + CDS 138474 - 139118 802 ## COG3143 Chemotaxis protein + Prom 139153 - 139212 2.8 126 65 Op 1 13/0.015 + CDS 139320 - 140468 1064 ## COG1377 Flagellar biosynthesis pathway, component FlhB 127 65 Op 2 . + CDS 140461 - 142539 2089 ## COG1298 Flagellar biosynthesis pathway, component FlhA 128 65 Op 3 . + CDS 142539 - 142931 142 ## B21_01838 hypothetical protein + Term 143094 - 143139 -1.0 129 66 Tu 1 . - CDS 143051 - 143539 212 ## COG3755 Uncharacterized protein conserved in bacteria - Prom 143635 - 143694 4.4 - Term 143654 - 143697 7.4 130 67 Tu 1 . - CDS 143716 - 145449 2224 ## COG0018 Arginyl-tRNA synthetase - Prom 145508 - 145567 4.1 + Prom 145582 - 145641 4.1 131 68 Op 1 3/0.706 + CDS 145665 - 146231 402 ## COG3102 Uncharacterized protein conserved in bacteria 132 68 Op 2 1/0.956 + CDS 146245 - 146991 393 ## COG3142 Uncharacterized protein involved in copper resistance + Term 147003 - 147038 2.0 + Prom 147295 - 147354 7.7 133 69 Op 1 7/0.044 + CDS 147379 - 148479 643 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 134 69 Op 2 5/0.250 + CDS 148504 - 149301 927 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 135 69 Op 3 . + CDS 149314 - 150933 1702 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Term 150972 - 151009 -0.2 136 70 Op 1 17/0.000 - CDS 151098 - 152069 1059 ## COG0500 SAM-dependent methyltransferases 137 70 Op 2 2/0.912 - CDS 152066 - 152809 772 ## COG0500 SAM-dependent methyltransferases 138 70 Op 3 2/0.912 - CDS 152850 - 153245 490 ## COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily 139 70 Op 4 1/0.956 - CDS 153298 - 154116 481 ## COG1801 Uncharacterized conserved protein 140 70 Op 5 . - CDS 154113 - 154679 539 ## COG1335 Amidases related to nicotinamidase - Prom 154706 - 154765 6.5 + Prom 154835 - 154894 4.6 141 71 Op 1 5/0.250 + CDS 154989 - 156761 2203 ## COG0173 Aspartyl-tRNA synthetase 142 71 Op 2 7/0.044 + CDS 156822 - 157331 324 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 143 71 Op 3 8/0.029 + CDS 157360 - 158100 1067 ## COG0217 Uncharacterized conserved protein 144 71 Op 4 . + CDS 158135 - 158656 581 ## COG0817 Holliday junction resolvasome, endonuclease subunit + Term 158664 - 158701 5.2 - Term 158481 - 158522 2.3 145 72 Tu 1 . - CDS 158658 - 159260 231 ## JW5306 hypothetical protein - Prom 159292 - 159351 6.0 + Prom 159445 - 159504 7.4 146 73 Op 1 29/0.000 + CDS 159535 - 160146 632 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 147 73 Op 2 . + CDS 160155 - 161165 1079 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 161182 - 161232 5.6 148 74 Op 1 42/0.000 - CDS 161312 - 162097 972 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 149 74 Op 2 . - CDS 162094 - 162849 219 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 162906 - 162965 7.3 + Prom 162698 - 162757 3.0 150 75 Op 1 . + CDS 162874 - 163860 408 ## COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin 151 75 Op 2 1/0.956 + CDS 163939 - 165198 1358 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 165215 - 165249 3.5 + Prom 165224 - 165283 6.4 152 76 Tu 1 . + CDS 165318 - 166289 746 ## COG1560 Lauroyl/myristoyl acyltransferase + Term 166379 - 166431 10.7 - Term 166278 - 166316 5.3 153 77 Tu 1 . - CDS 166420 - 167862 1458 ## COG0469 Pyruvate kinase - Term 167931 - 167971 1.4 154 78 Tu 1 . - CDS 167990 - 168859 672 ## COG1737 Transcriptional regulators + Prom 168965 - 169024 7.8 155 79 Tu 1 . + CDS 169197 - 170672 1733 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Term 170752 - 170789 5.1 + Prom 170740 - 170799 6.6 156 80 Op 1 8/0.029 + CDS 170907 - 172718 1687 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 157 80 Op 2 . + CDS 172755 - 173396 984 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 173400 - 173447 8.7 - Term 173388 - 173432 10.2 158 81 Tu 1 . - CDS 173452 - 174630 1267 ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) - Prom 174723 - 174782 4.7 + Prom 174678 - 174737 5.0 159 82 Op 1 . + CDS 174764 - 175054 389 ## COG3141 Uncharacterized protein conserved in bacteria 160 82 Op 2 . + CDS 175121 - 175477 205 ## ECIAI39_1203 hypothetical protein 161 83 Tu 1 . - CDS 175391 - 175597 90 ## gi|188494878|ref|ZP_03002148.1| hypothetical protein Ec53638_0054 - Prom 175661 - 175720 3.2 + Prom 175588 - 175647 2.8 162 84 Tu 1 . + CDS 175804 - 176463 777 ## COG2979 Uncharacterized protein conserved in bacteria + Prom 176587 - 176646 4.3 163 85 Tu 1 . + CDS 176672 - 178732 1873 ## COG1770 Protease II 164 86 Op 1 4/0.500 - CDS 178729 - 179391 783 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 165 86 Op 2 . - CDS 179415 - 180071 448 ## COG0388 Predicted amidohydrolase - Prom 180111 - 180170 3.7 166 87 Tu 1 . - CDS 180173 - 180403 338 ## ECP_1786 DNA polymerase III subunit theta (EC:2.7.7.7) - Prom 180425 - 180484 2.1 + Prom 180454 - 180513 4.0 167 88 Op 1 8/0.029 + CDS 180542 - 180916 371 ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC 168 88 Op 2 . + CDS 180920 - 181792 712 ## COG1276 Putative copper export protein 169 88 Op 3 . + CDS 181805 - 182146 373 ## SSON_1309 hypothetical protein + Term 182175 - 182232 4.4 170 89 Tu 1 . + CDS 182542 - 183198 516 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 171 90 Op 1 . - CDS 183199 - 183474 183 ## SbBS512_E2105 hypothetical protein 172 90 Op 2 . - CDS 183495 - 183731 223 ## ECSP_2410 hypothetical protein - Prom 183785 - 183844 4.4 173 91 Tu 1 4/0.500 - CDS 183849 - 185288 1208 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Term 185324 - 185359 7.2 174 92 Op 1 11/0.029 - CDS 185368 - 188001 2564 ## COG3008 Paraquat-inducible protein B 175 92 Op 2 . - CDS 187970 - 189148 783 ## COG2995 Uncharacterized paraquat-inducible protein A - Prom 189328 - 189387 4.8 + Prom 189257 - 189316 3.7 176 93 Op 1 4/0.500 + CDS 189383 - 189880 302 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Term 189907 - 189941 3.1 177 93 Op 2 7/0.044 + CDS 189977 - 190675 542 ## COG3109 Activator of osmoprotectant transporter ProP 178 93 Op 3 5/0.250 + CDS 190695 - 192743 2120 ## COG0793 Periplasmic protease + Term 192750 - 192785 6.0 + Prom 192772 - 192831 4.4 179 94 Tu 1 . + CDS 192938 - 193816 864 ## COG0501 Zn-dependent protease with chaperone function + Term 193837 - 193868 2.4 - Term 193825 - 193856 2.4 180 95 Tu 1 . - CDS 193862 - 195235 974 ## COG0477 Permeases of the major facilitator superfamily - Prom 195355 - 195414 8.3 + Prom 195314 - 195373 6.3 181 96 Tu 1 . + CDS 195412 - 196203 935 ## COG1414 Transcriptional regulator + Term 196213 - 196257 3.1 - Term 196201 - 196243 2.3 182 97 Tu 1 . - CDS 196347 - 196586 256 ## ECO103_2017 hypothetical protein - Prom 196610 - 196669 5.2 + Prom 196884 - 196943 6.0 183 98 Tu 1 . + CDS 196963 - 197250 254 ## ECS88_1877 hypothetical protein + Term 197264 - 197307 6.1 + Prom 197945 - 198004 2.6 184 99 Tu 1 . + CDS 198076 - 198285 338 ## COG1278 Cold shock proteins + Term 198334 - 198364 1.0 + Prom 198293 - 198352 3.7 185 100 Tu 1 . + CDS 198451 - 199260 553 ## COG0500 SAM-dependent methyltransferases + Term 199509 - 199548 3.0 - Term 199180 - 199221 2.1 186 101 Tu 1 . - CDS 199257 - 199823 678 ## COG1971 Predicted membrane protein - Term 200018 - 200058 0.8 187 102 Tu 1 4/0.500 - CDS 200252 - 200710 298 ## COG4811 Predicted membrane protein - Term 200719 - 200748 3.5 188 103 Op 1 13/0.015 - CDS 200765 - 201616 1058 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 189 103 Op 2 13/0.015 - CDS 201629 - 202429 1029 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 190 103 Op 3 . - CDS 202492 - 203463 1212 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 203598 - 203657 4.5 191 104 Tu 1 . + CDS 203926 - 205482 1881 ## COG1253 Hemolysins and related proteins containing CBS domains 192 105 Tu 1 . - CDS 205486 - 207084 1316 ## COG2200 FOG: EAL domain - Prom 207141 - 207200 1.9 - Term 207167 - 207204 8.2 193 106 Tu 1 . - CDS 207215 - 208579 1421 ## COG1760 L-serine deaminase - Prom 208672 - 208731 5.2 194 107 Op 1 6/0.118 - CDS 208763 - 209341 428 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 195 107 Op 2 . - CDS 209345 - 210706 1052 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 210754 - 210813 5.2 + Prom 210698 - 210757 4.7 196 108 Tu 1 . + CDS 210780 - 210959 347 ## COG3140 Uncharacterized protein conserved in bacteria - Term 211006 - 211049 5.2 197 109 Tu 1 . - CDS 211079 - 211378 233 ## S1533 hypothetical protein 198 110 Tu 1 . - CDS 211800 - 212144 469 ## COG0251 Putative translation initiation inhibitor, yjgF family + Prom 212112 - 212171 2.9 199 111 Op 1 8/0.029 + CDS 212276 - 214186 1667 ## COG1199 Rad3-related DNA helicases 200 111 Op 2 7/0.044 + CDS 214244 - 214939 685 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 201 111 Op 3 7/0.044 + CDS 214979 - 215560 571 ## COG3065 Starvation-inducible outer membrane lipoprotein + Term 215586 - 215614 0.6 + Prom 215620 - 215679 3.1 202 112 Op 1 8/0.029 + CDS 215699 - 217450 1680 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 217469 - 217501 3.0 203 112 Op 2 . + CDS 217532 - 218647 1124 ## COG0349 Ribonuclease D - Term 218640 - 218696 13.2 204 113 Op 1 11/0.029 - CDS 218701 - 219666 604 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Term 219676 - 219718 5.5 205 113 Op 2 3/0.706 - CDS 219722 - 220846 1230 ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 206 113 Op 3 3/0.706 - CDS 220878 - 222308 1460 ## COG1292 Choline-glycine betaine transporter - Prom 222370 - 222429 7.2 - Term 222461 - 222495 6.0 207 114 Tu 1 . - CDS 222514 - 223599 1054 ## COG0473 Isocitrate/isopropylmalate dehydrogenase - Prom 223634 - 223693 3.0 + Prom 223602 - 223661 3.8 208 115 Tu 1 . + CDS 223702 - 224625 856 ## COG0583 Transcriptional regulator + Prom 224652 - 224711 3.5 209 116 Tu 1 . + CDS 224752 - 225390 488 ## COG1280 Putative threonine efflux protein + Prom 225437 - 225496 3.6 210 117 Op 1 . + CDS 225563 - 225922 362 ## COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance 211 117 Op 2 . + CDS 225926 - 226108 292 ## ECB_01765 hypothetical protein + Prom 226154 - 226213 3.6 212 118 Tu 1 . + CDS 226256 - 226504 330 ## COG2261 Predicted membrane protein + Term 226518 - 226555 6.3 - Term 226679 - 226717 2.0 213 119 Tu 1 . - CDS 226771 - 227796 760 ## COG2199 FOG: GGDEF domain - Prom 227895 - 227954 6.9 + Prom 227895 - 227954 3.9 214 120 Tu 1 . + CDS 227979 - 228233 142 ## COG3042 Putative hemolysin + Term 228261 - 228317 0.6 215 121 Op 1 3/0.706 - CDS 228255 - 228602 450 ## COG3189 Uncharacterized conserved protein 216 121 Op 2 . - CDS 228657 - 229838 570 ## COG2807 Cyanate permease - Prom 229861 - 229920 3.4 + Prom 229855 - 229914 5.8 217 122 Tu 1 . + CDS 229938 - 230756 321 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 230661 - 230694 2.0 218 123 Tu 1 . - CDS 230713 - 231159 614 ## COG2707 Predicted membrane protein - Prom 231259 - 231318 3.1 - Term 231262 - 231309 4.2 219 124 Op 1 2/0.912 - CDS 231434 - 231937 517 ## COG2606 Uncharacterized conserved protein 220 124 Op 2 5/0.250 - CDS 231980 - 233452 1069 ## COG2199 FOG: GGDEF domain - Prom 233585 - 233644 2.7 - Term 233603 - 233633 1.0 221 125 Tu 1 4/0.500 - CDS 233651 - 234994 827 ## COG2199 FOG: GGDEF domain - Prom 235083 - 235142 4.8 - Term 235229 - 235267 5.2 222 126 Tu 1 . - CDS 235273 - 236556 947 ## PROTEIN SUPPORTED gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34 223 127 Tu 1 . - CDS 236669 - 238603 2003 ## COG2766 Putative Ser protein kinase + Prom 238806 - 238865 4.0 224 128 Op 1 3/0.706 + CDS 239039 - 239785 872 ## COG3713 Outer membrane protein V + Term 239821 - 239849 3.0 225 128 Op 2 . + CDS 239875 - 240729 854 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 240837 - 240869 0.1 226 129 Op 1 4/0.500 - CDS 240777 - 241661 1014 ## COG0676 Uncharacterized enzymes related to aldose 1-epimerase - Prom 241682 - 241741 3.5 - Term 241689 - 241718 2.1 227 129 Op 2 . - CDS 241745 - 242740 1180 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 242915 - 242974 6.2 228 130 Op 1 3/0.706 + CDS 243082 - 243495 263 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 229 130 Op 2 1/0.956 + CDS 243537 - 243809 344 ## COG3139 Uncharacterized protein conserved in bacteria + Prom 244036 - 244095 4.1 230 131 Op 1 7/0.044 + CDS 244179 - 245255 1220 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 231 131 Op 2 7/0.044 + CDS 245282 - 246661 905 ## COG0477 Permeases of the major facilitator superfamily 232 131 Op 3 3/0.706 + CDS 246678 - 247721 838 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 233 131 Op 4 4/0.500 + CDS 247742 - 248578 750 ## COG0191 Fructose/tagatose bisphosphate aldolase 234 131 Op 5 2/0.912 + CDS 248583 - 249530 772 ## COG0524 Sugar kinases, ribokinase family 235 131 Op 6 4/0.500 + CDS 249540 - 250520 806 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Prom 250566 - 250625 5.1 236 132 Tu 1 . + CDS 250657 - 251415 547 ## COG1349 Transcriptional regulators of sugar metabolism + Term 251477 - 251511 4.0 + Prom 251417 - 251476 2.0 237 133 Tu 1 . + CDS 251532 - 252890 741 ## COG0477 Permeases of the major facilitator superfamily 238 134 Op 1 2/0.912 - CDS 252983 - 253624 666 ## COG1335 Amidases related to nicotinamidase 239 134 Op 2 4/0.500 - CDS 253635 - 254651 951 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Prom 254676 - 254735 4.1 - Term 254769 - 254805 7.2 240 135 Op 1 . - CDS 254818 - 256674 1873 ## COG0616 Periplasmic serine proteases (ClpP class) 241 135 Op 2 . - CDS 256617 - 256781 75 ## ECUMN_2054 hypothetical protein - Prom 256951 - 257010 3.0 + Prom 256750 - 256809 4.9 242 136 Tu 1 . + CDS 256835 - 257386 617 ## COG0778 Nitroreductase + Prom 257422 - 257481 2.2 243 137 Op 1 5/0.250 + CDS 257503 - 258546 1152 ## COG0709 Selenophosphate synthase 244 137 Op 2 . + CDS 258551 - 260512 1787 ## COG0550 Topoisomerase IA + Term 260549 - 260599 9.8 + Prom 260556 - 260615 6.3 245 138 Tu 1 . + CDS 260640 - 261680 296 ## B21_01719 hypothetical protein + Term 261930 - 261959 -0.2 246 139 Tu 1 . - CDS 261797 - 263140 1429 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 263205 - 263264 4.1 + Prom 263130 - 263189 2.7 247 140 Tu 1 . + CDS 263376 - 263648 108 ## B21_01717 hypothetical protein + Term 263875 - 263903 -1.0 248 141 Tu 1 . - CDS 263614 - 264021 373 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 264048 - 264107 4.7 + Prom 264007 - 264066 4.6 249 142 Tu 1 . + CDS 264108 - 264728 515 ## COG0558 Phosphatidylglycerophosphate synthase + Term 264765 - 264791 -1.0 250 143 Op 1 1/0.956 - CDS 264737 - 266044 1441 ## COG2897 Rhodanese-related sulfurtransferase 251 143 Op 2 3/0.706 - CDS 266111 - 266764 194 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 252 143 Op 3 3/0.706 - CDS 266764 - 268254 1456 ## COG4135 ABC-type uncharacterized transport system, permease component 253 143 Op 4 2/0.912 - CDS 268272 - 269438 996 ## COG4134 ABC-type uncharacterized transport system, periplasmic component 254 143 Op 5 3/0.706 - CDS 269448 - 269996 518 ## COG2128 Uncharacterized conserved protein 255 143 Op 6 . - CDS 269996 - 270700 661 ## COG0398 Uncharacterized conserved protein 256 143 Op 7 . - CDS 270718 - 271395 830 ## EcSMS35_1439 hypothetical protein 257 143 Op 8 1/0.956 - CDS 271400 - 272110 642 ## COG0398 Uncharacterized conserved protein - Prom 272130 - 272189 3.5 258 144 Tu 1 . - CDS 272277 - 273083 845 ## COG0708 Exonuclease III - Prom 273281 - 273340 5.3 + Prom 273270 - 273329 9.7 259 145 Op 1 7/0.044 + CDS 273529 - 274749 1421 ## COG4992 Ornithine/acetylornithine aminotransferase 260 145 Op 2 8/0.029 + CDS 274749 - 275780 1044 ## COG3138 Arginine/ornithine N-succinyltransferase beta subunit 261 145 Op 3 7/0.044 + CDS 275777 - 277255 1280 ## COG1012 NAD-dependent aldehyde dehydrogenases 262 145 Op 4 5/0.250 + CDS 277252 - 278595 1226 ## COG3724 Succinylarginine dihydrolase 263 145 Op 5 4/0.500 + CDS 278588 - 279556 777 ## COG2988 Succinylglutamate desuccinylase + Term 279563 - 279596 5.4 + Prom 279716 - 279775 5.5 264 146 Tu 1 . + CDS 279886 - 280371 624 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein + Term 280396 - 280457 12.0 + Prom 280425 - 280484 2.5 265 147 Tu 1 . + CDS 280574 - 281149 348 ## COG3758 Uncharacterized protein conserved in bacteria 266 148 Tu 1 . - CDS 281109 - 281858 529 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 282019 - 282078 3.6 - Term 282148 - 282187 8.2 267 149 Tu 1 . - CDS 282226 - 283053 903 ## COG0171 NAD synthase + Prom 283095 - 283154 1.7 268 150 Tu 1 . + CDS 283255 - 283593 417 ## ECIAI39_1315 DNA-binding transcriptional activator OsmE + Term 283624 - 283659 4.5 + Prom 283726 - 283785 4.7 269 151 Op 1 10/0.029 + CDS 283892 - 284212 411 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Term 284258 - 284291 1.4 + Prom 284218 - 284277 4.4 270 151 Op 2 13/0.015 + CDS 284297 - 285655 1656 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 271 151 Op 3 5/0.250 + CDS 285706 - 286056 594 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 272 151 Op 4 4/0.500 + CDS 286067 - 286906 769 ## COG2207 AraC-type DNA-binding domain-containing proteins 273 152 Op 1 5/0.250 + CDS 287011 - 288363 1645 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 274 152 Op 2 . + CDS 288376 - 289125 643 ## COG3394 Uncharacterized protein conserved in bacteria + Term 289136 - 289181 2.4 - Term 289340 - 289382 3.5 275 153 Tu 1 . - CDS 289383 - 291644 2196 ## COG0753 Catalase - Prom 291817 - 291876 2.8 + Prom 291612 - 291671 4.1 276 154 Tu 1 . + CDS 291827 - 292090 172 ## SSON_1427 cell division modulator + Term 292226 - 292270 -0.8 + Prom 292643 - 292702 6.6 277 155 Tu 1 . + CDS 292895 - 293182 110 ## JW1719 hypothetical protein - Term 293131 - 293175 7.0 278 156 Op 1 1/0.956 - CDS 293186 - 294577 1806 ## COG1823 Predicted Na+/dicarboxylate symporter 279 156 Op 2 . - CDS 294710 - 295300 309 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 295324 - 295383 4.5 - Term 295418 - 295461 12.2 280 157 Tu 1 . - CDS 295463 - 296131 744 ## COG0637 Predicted phosphatase/phosphohexomutase - Prom 296187 - 296246 3.2 + Prom 296049 - 296108 3.3 281 158 Tu 1 . + CDS 296278 - 296814 490 ## JW1715 predicted inner membrane protein + Term 296821 - 296849 1.3 - Term 296809 - 296837 1.3 282 159 Tu 1 . - CDS 296855 - 297715 837 ## COG3001 Fructosamine-3-kinase - Prom 297735 - 297794 3.4 283 160 Tu 1 . - CDS 297821 - 298111 293 ## ECH74115_2442 hypothetical protein 284 161 Tu 1 . - CDS 298212 - 299141 1010 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 299225 - 299284 6.1 + Prom 299240 - 299299 11.7 285 162 Tu 1 . + CDS 299428 - 300186 625 ## COG3137 Putative salt-induced outer membrane protein + Term 300195 - 300231 6.2 - Term 300179 - 300221 -0.2 286 163 Op 1 . - CDS 300239 - 300451 154 ## SFV_1500 hypothetical protein 287 163 Op 2 1/0.956 - CDS 300518 - 301162 312 ## COG0666 FOG: Ankyrin repeat - Prom 301187 - 301246 3.4 288 164 Tu 1 . - CDS 301944 - 302417 136 ## COG0666 FOG: Ankyrin repeat - Prom 302461 - 302520 6.1 + Prom 302697 - 302756 7.1 289 165 Op 1 16/0.000 + CDS 303001 - 304869 2020 ## COG0441 Threonyl-tRNA synthetase 290 165 Op 2 36/0.000 + CDS 304936 - 305415 665 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 + Term 305433 - 305472 8.2 291 165 Op 3 46/0.000 + CDS 305497 - 305709 358 ## PROTEIN SUPPORTED gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35 292 165 Op 4 13/0.015 + CDS 305762 - 306118 578 ## PROTEIN SUPPORTED gi|15802128|ref|NP_288150.1| 50S ribosomal protein L20 + Term 306130 - 306161 2.1 + Prom 306325 - 306384 5.0 293 166 Op 1 40/0.000 + CDS 306569 - 307552 1310 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 294 166 Op 2 13/0.015 + CDS 307567 - 309954 2924 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 295 166 Op 3 4/0.500 + CDS 309959 - 310258 318 ## PROTEIN SUPPORTED gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35 + Term 310276 - 310304 2.1 + Prom 310274 - 310333 3.8 296 167 Op 1 5/0.250 + CDS 310359 - 311339 984 ## COG4139 ABC-type cobalamin transport system, permease component 297 167 Op 2 5/0.250 + CDS 311402 - 311953 642 ## COG0386 Glutathione peroxidase 298 167 Op 3 4/0.500 + CDS 311965 - 312702 764 ## COG4138 ABC-type cobalamin transport system, ATPase component 299 167 Op 4 5/0.250 + CDS 312780 - 313244 273 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 313257 - 313296 11.1 + Prom 313296 - 313355 4.3 300 168 Op 1 4/0.500 + CDS 313491 - 314204 144 ## COG2200 FOG: EAL domain 301 168 Op 2 . + CDS 314267 - 315703 1080 ## COG0397 Uncharacterized conserved protein 302 169 Tu 1 . - CDS 315707 - 315898 181 ## COG4256 Hemin uptake protein - Prom 315927 - 315986 4.0 - Term 315989 - 316024 6.7 303 170 Op 1 . - CDS 316030 - 317076 849 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 317167 - 317226 3.5 304 170 Op 2 . - CDS 317233 - 318066 755 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 318159 - 318218 10.0 + Prom 318123 - 318182 7.9 305 171 Tu 1 . + CDS 318399 - 320777 2744 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 320785 - 320821 7.7 - Term 320773 - 320809 4.5 306 172 Tu 1 2/0.912 - CDS 320834 - 322480 1210 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - Term 322490 - 322524 5.0 307 173 Op 1 12/0.015 - CDS 322537 - 322830 319 ## COG2440 Ferredoxin-like protein 308 173 Op 2 9/0.029 - CDS 322827 - 324116 1192 ## COG0644 Dehydrogenases (flavoproteins) 309 173 Op 3 29/0.000 - CDS 324172 - 325110 1040 ## COG2025 Electron transfer flavoprotein, alpha subunit 310 173 Op 4 . - CDS 325130 - 325894 787 ## COG2086 Electron transfer flavoprotein, beta subunit - Prom 326006 - 326065 6.1 + Prom 326035 - 326094 6.5 311 174 Tu 1 . + CDS 326210 - 327121 581 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 327123 - 327175 6.0 - Term 327113 - 327157 8.2 312 175 Op 1 . - CDS 327164 - 328315 1453 ## COG1960 Acyl-CoA dehydrogenases 313 175 Op 2 3/0.706 - CDS 328329 - 329924 1589 ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase - Prom 329995 - 330054 2.9 - Term 330010 - 330062 -0.8 314 176 Op 1 8/0.029 - CDS 330067 - 330825 845 ## COG0710 3-dehydroquinate dehydratase 315 176 Op 2 4/0.500 - CDS 330856 - 331722 873 ## COG0169 Shikimate 5-dehydrogenase 316 176 Op 3 21/0.000 - CDS 331734 - 332999 1003 ## COG0477 Permeases of the major facilitator superfamily - Prom 333149 - 333208 3.2 317 176 Op 4 . - CDS 333226 - 334440 867 ## COG0477 Permeases of the major facilitator superfamily 318 176 Op 5 . - CDS 334540 - 334896 175 ## JW1679 conserved hypothetical protein - Prom 335022 - 335081 6.3 - Term 335285 - 335317 6.3 319 177 Tu 1 . - CDS 335325 - 336437 1351 ## COG0628 Predicted permease 320 178 Op 1 6/0.118 + CDS 336826 - 339882 2539 ## COG0277 FAD/FMN-containing dehydrogenases 321 178 Op 2 . + CDS 339879 - 340289 296 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism + Term 340335 - 340377 6.1 + Prom 340305 - 340364 5.9 322 178 Op 3 . + CDS 340389 - 340577 312 ## SbBS512_E1886 hypothetical protein + Term 340798 - 340848 12.4 + Prom 340883 - 340942 4.5 323 179 Op 1 3/0.706 + CDS 341125 - 341493 508 ## COG0316 Uncharacterized conserved protein 324 179 Op 2 41/0.000 + CDS 341463 - 342989 1439 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 325 179 Op 3 41/0.000 + CDS 342999 - 343745 753 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 326 179 Op 4 24/0.000 + CDS 343720 - 344991 1114 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 327 179 Op 5 7/0.044 + CDS 344988 - 346208 1321 ## COG0520 Selenocysteine lyase 328 179 Op 6 4/0.500 + CDS 346221 - 346637 607 ## COG2166 SufE protein probably involved in Fe-S center assembly + Prom 346648 - 346707 2.8 329 180 Tu 1 . + CDS 346786 - 347790 743 ## COG1376 Uncharacterized protein conserved in bacteria + Term 347814 - 347844 4.3 - Term 347796 - 347838 11.2 330 181 Tu 1 . - CDS 347854 - 348090 322 ## COG4238 Murein lipoprotein - Prom 348308 - 348367 5.7 - Term 348338 - 348371 4.5 331 182 Tu 1 . - CDS 348401 - 349813 1516 ## COG0469 Pyruvate kinase - Prom 350043 - 350102 8.3 + Prom 350222 - 350281 7.2 332 183 Tu 1 . + CDS 350370 - 350579 257 ## LF82_2868 uncharacterized protein YdhZ + Term 350584 - 350624 8.2 333 184 Op 1 5/0.250 + CDS 351034 - 351660 434 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 334 184 Op 2 . + CDS 351681 - 353783 1855 ## COG2414 Aldehyde:ferredoxin oxidoreductase 335 184 Op 3 . + CDS 353796 - 354434 438 ## B21_01631 hypothetical protein 336 184 Op 4 3/0.706 + CDS 354498 - 355166 231 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 337 184 Op 5 . + CDS 355163 - 355948 621 ## COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) 338 184 Op 6 . + CDS 355952 - 356764 278 ## B21_01628 hypothetical protein - Term 356729 - 356763 -0.5 339 185 Tu 1 . - CDS 356776 - 358380 817 ## COG4529 Uncharacterized protein conserved in bacteria - Prom 358441 - 358500 3.3 - Term 358465 - 358491 -0.7 340 186 Tu 1 . - CDS 358506 - 358811 323 ## SSON_1489 hypothetical protein - TRNA 358919 - 358995 96.8 # Val GAC 0 0 - TRNA 359000 - 359076 92.3 # Val GAC 0 0 + Prom 359288 - 359347 3.3 341 187 Tu 1 . + CDS 359384 - 360640 878 ## COG3468 Type V secretory pathway, adhesin AidA + Term 360648 - 360685 6.1 - Term 360633 - 360674 7.2 342 188 Tu 1 . - CDS 360681 - 362054 1533 ## COG0534 Na+-driven multidrug efflux pump - Prom 362135 - 362194 5.7 + Prom 361996 - 362055 3.6 343 189 Tu 1 . + CDS 362269 - 362910 753 ## COG0307 Riboflavin synthase alpha chain - Term 362906 - 362938 4.6 344 190 Tu 1 . - CDS 362950 - 364098 975 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases - Prom 364326 - 364385 7.3 - Term 364157 - 364189 1.0 345 191 Tu 1 . - CDS 364389 - 365600 1184 ## COG0477 Permeases of the major facilitator superfamily - Prom 365632 - 365691 2.9 + Prom 365625 - 365684 4.4 346 192 Tu 1 . + CDS 365713 - 366645 593 ## COG0583 Transcriptional regulator + Term 366726 - 366778 2.1 - Term 366589 - 366635 0.5 347 193 Tu 1 . - CDS 366642 - 367667 1124 ## COG1609 Transcriptional regulators - Prom 367824 - 367883 4.0 + Prom 367877 - 367936 5.6 348 194 Tu 1 . + CDS 367966 - 368055 105 ## + Term 368106 - 368155 2.4 + Prom 368116 - 368175 3.4 349 195 Tu 1 . + CDS 368221 - 369390 1289 ## COG2814 Arabinose efflux permease - Term 369483 - 369511 -1.0 350 196 Tu 1 . - CDS 369625 - 370206 461 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 370259 - 370318 4.4 - Term 370289 - 370330 8.1 351 197 Tu 1 . - CDS 370334 - 371149 518 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 371203 - 371262 7.1 + Prom 371390 - 371449 4.7 352 198 Tu 1 . + CDS 371483 - 371830 525 ## COG0278 Glutaredoxin-related protein + Term 371845 - 371885 8.5 - Term 371820 - 371861 -0.8 353 199 Tu 1 3/0.706 - CDS 371881 - 376497 3601 ## COG1201 Lhr-like helicases 354 200 Tu 1 . - CDS 376590 - 376982 335 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases Predicted protein(s) >gi|223713588|gb|ACDM01000010.1| GENE 1 786 - 1154 171 122 aa, chain + ## HITS:1 COG:no KEGG:EC55989_2240 NR:ns ## KEGG: EC55989_2240 # Name: not_defined # Def: putative transposase, ISL3 family # Organism: E.coli_55989 # Pathway: not_defined # 1 122 338 459 459 238 99.0 7e-62 MSTRPPKRGLLDPWREWLKEQRECGNYNSGRIWREMVARGVTGSETIVRDAVAKWHKGWI PPVTTAARLPSVSRVSRWLMPWRIIRGEENYAFRFISLMCEKEPELKIAQQLVLEFYRIL KT >gi|223713588|gb|ACDM01000010.1| GENE 2 1806 - 2840 923 344 aa, chain - ## HITS:1 COG:STM3550 KEGG:ns NR:ns ## COG: STM3550 COG1735 # Protein_GI_number: 16766836 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Salmonella typhimurium LT2 # 1 344 1 344 344 620 86.0 1e-178 MKDYLQTVTGPVAREDMGLTLPHEHLFNDLSSVVDAPCYPFSQQLVDKKVTAEIQWALKH DPYCCADNMDRKPIEDVIFEINNFISLGGRTIVDATGSESIGRDAQALREVALKTGLNIV ASCGPYLEKFESQRIHKTVDELATTIDKELNQGIGDTDIRAGMIGEIGVSPTFTEAEHNS LRAASLAQINNPHVAMNIHMPGWLRRGDEVLDIVLGEMGVSPNKVSLAHSDPSGKDVAYQ RKMLDKGVWLEFDMIGLDITFPKEGIAPGVQETADAVAHLIELGYADQLVLSHDVFLKQM WAKNGGNGWGFVPDVFLAYLAERGVDKTILKKLCIDNPGRLLTA >gi|223713588|gb|ACDM01000010.1| GENE 3 2843 - 3808 739 321 aa, chain - ## HITS:1 COG:STM3549 KEGG:ns NR:ns ## COG: STM3549 COG3238 # Protein_GI_number: 16766835 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 321 1 321 323 528 93.0 1e-150 MKKNKYSTPLWMLATILAGMLSPMQSAVNGQLGHWLQDGNACAVISFASGLVVMFFIIMA RKETRQQFAAIPSLIKNRKVPLWNWFAGLCGAMVVFSEGASASALGVATFQTALISALLL SGLLCDRFGIGVDEKKYFTPYRIIGALFAVIATIFVVSPQWHSTSFILLAILPFLAGLLA GWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGTALAIRVALGHVTVQLPDVWWMYLGGP LGLMSIGLMAILVRGLGLLMLGVASTAGQLLGSVLIDVLIPSLGNTVYLVTIIGTLFALV GAIVTTIPEYRASKTMKKMEV >gi|223713588|gb|ACDM01000010.1| GENE 4 3865 - 4623 767 252 aa, chain - ## HITS:1 COG:STM3548 KEGG:ns NR:ns ## COG: STM3548 COG5426 # Protein_GI_number: 16766834 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Salmonella typhimurium LT2 # 1 252 1 252 253 447 81.0 1e-126 MNNTKKSLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLQCLKNSQVDVTYMPAHT VQIAFPEDVAQLEQYDAIVISDIGSNTFLLQNDTFYQLRIKPNALELIKEYVNNGGGLLM IGGYLSFMGIEAKANYKNTVLADVLPVTMLDGDDRVEKPEGVIAQPSQPEHPVIKGFSEY PFFLGYNRAIAKENAEVVLTINNAPLLVFGNYHNGKIACFMSDCSPHWGTQQFMSWPFYT ALWVNILTHIAR >gi|223713588|gb|ACDM01000010.1| GENE 5 4735 - 5847 397 370 aa, chain - ## HITS:1 COG:STM3547_2 KEGG:ns NR:ns ## COG: STM3547_2 COG0524 # Protein_GI_number: 16766833 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 94 326 2 234 312 379 80.0 1e-105 MKFERHHEILKRLSKFGSVKVSDLSNSLNVTKETIRSDLNELARLGYLTRCHGGAFIVLD SLDTIAKNEIAYALENYDTAQGIKKGHSTMKSQVCVIGSFNVDIISYLPRLPTIGESLLA SNFIFSPGGKGCNQALAASFADTDVYFITKVGTDHFSDYAINFMNSSKIYKNIIYQTKET QTGTATILVNEGTGDNVIAIYPGANMTMSSDEITIQKEAIINSDVILLQLETNYTALQQA ITLAQKNSIPVIINPAPYNDIVNELIQDVDYITPNETEAGLLSGIDVHDLESAKRAAEAI HNKGVKNTVITLGSKGSLAFDGKKFIRQRFQRSLKIRQEPGMRLTALWHQDLRKENHWNQ HCVMPAPLHP >gi|223713588|gb|ACDM01000010.1| GENE 6 6043 - 6159 90 38 aa, chain - ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 38 477 518 537 67 78.0 5e-12 MFFDGERSALLYGLIGTCLLNDIDPEEYLRHILSVLPE >gi|223713588|gb|ACDM01000010.1| GENE 7 7468 - 7602 63 44 aa, chain + ## HITS:1 COG:no KEGG:ECP_1964 NR:ns ## KEGG: ECP_1964 # Name: not_defined # Def: putative thioesterase # Organism: E.coli_536 # Pathway: not_defined # 1 41 1 41 240 88 90.0 6e-17 MSNISLYCLPYSGGSAAMYYKWRNVLSDNITLKPLEPVGKGNEQ >gi|223713588|gb|ACDM01000010.1| GENE 8 7592 - 8824 505 410 aa, chain + ## HITS:1 COG:ECs1386 KEGG:ns NR:ns ## COG: ECs1386 COG3969 # Protein_GI_number: 15830640 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli O157:H7 # 1 410 1 410 410 768 91.0 0 MNSDFSAKKILTGEDVLCAAVHRIEWLFETFSSVCLSFSGGKDSTVLLHLTADVARRKKR RFSVLFIDWEAQYQCTIAHILKMREMYRDVTETFYWVALPLTTVNGVSQFQPEWICWEPG VEWVRQPPDDAITDMSYFPFYRYAMTFEEFVPAFSSWFAGNRCGVAILTGVRADESLNRF VGLVSQRKLRYADDKPWTTASPEGFYYTLYPLYDWKARDIWIYNARTRAIYNPLYDLMYR AGVPLRNMRVCEPFGPEQRKGLWLYHVLEPETWARMCERVSGAASGALYANESGAYFALR KRITKPPHHTWRSYAMFLLDVMPERTAEHYRNKIAVYLRWYQTRGFPDDIPDEQENDLGS RDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLQRMKERRKEWGIL >gi|223713588|gb|ACDM01000010.1| GENE 9 8809 - 9453 329 214 aa, chain + ## HITS:1 COG:ECs1387 KEGG:ns NR:ns ## COG: ECs1387 COG1475 # Protein_GI_number: 15830641 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 214 1 212 212 381 89.0 1e-106 MGDSVTPEVEVLSNMIRQYFSQERSEEETIRALNHLRRVLHEVSPFAQEPVDCVLWVKAN EVVANDYNPNVMSSSEKKLLKHSLEQDGFTQPVVVSEEKEHYLVVDGFHRQLLGRKADTR KRLKGWLPVACINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTDERIGT ELGMDQDEVLRLKQISGLTELFQEENFSPAWTVR >gi|223713588|gb|ACDM01000010.1| GENE 10 9824 - 11002 389 392 aa, chain - ## HITS:1 COG:ECs2792 KEGG:ns NR:ns ## COG: ECs2792 COG1629 # Protein_GI_number: 15832046 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 1 392 324 715 715 733 99.0 0 MIQALTVHNKTDTHDKQYTQAVTLQSHFSLPANNELVTGAQYKQDRVNQRSGGMTSSKSL TGFINKETRTRSYYESEQSTVSLFAQNDWQFADHWTWTMGVRQYWLSSKLTRGDGVSYTA GIISDTSLARESASDHEMVTSTSLRYSGFDNLELRAAFAQGYVFPTLSQLFMQTSAGGSV TYGNPDLKAEHSNNFELGARYNGNQWLIDSAVYYSEAKDYIASLICDGSIVCNGNTNSSR SSYYYYDNIDRAKTWGLEISAEYNGWVFSPYISGNLIRRQYETSTLKTTNTGEPAINGRI GLKHTLVMGQANIISDVFIRAASSAKDDSNGTETNVPGWATLNFAVNTEFGNEDQYRINL ALNNLTDKRYRTAHETIPAAGFNAAIGFVWNF >gi|223713588|gb|ACDM01000010.1| GENE 11 11029 - 11970 265 313 aa, chain - ## HITS:1 COG:Z3159 KEGG:ns NR:ns ## COG: Z3159 COG1629 # Protein_GI_number: 15802478 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 EDL933 # 1 296 5 300 719 564 98.0 1e-160 MLYNIPCRIYILSTLSLCISGIVSTATATSSETKISNEETLVVTTNRSASNLWESPATIQ VIDQQTLQNSTNASIADNLQDIPGVEITDNSLAGRKQIRIRGEASSRVLILIDGQEVTYQ RAGDNYSVGLLIDESALERVEIVKGPYSVLYGSQAIGGIVNFITKKGGNKLASGVVKAVY NSATAGWEESIAVQGSIGGFDYRINGSYSDQGNRDTPDGRLPNTNYRNNSQGVWLGYNSG NHRFGLSLDRYRLATQTYYEDPDGSYEAFSVKIPKLEREKVGVFYDTDVDGDYLKKFIST RMSRPSSANLPTK >gi|223713588|gb|ACDM01000010.1| GENE 12 13013 - 13177 78 54 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_1129 NR:ns ## KEGG: EcSMS35_1129 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 54 1 54 54 82 100.0 3e-15 MPLITHLLNVEELSRLLKNVALSVINLFILDDVSEKMEYIPDWVVVTRLNIWWR >gi|223713588|gb|ACDM01000010.1| GENE 13 13645 - 14187 440 180 aa, chain + ## HITS:1 COG:ECs2788 KEGG:ns NR:ns ## COG: ECs2788 COG2087 # Protein_GI_number: 15832042 # Func_class: H Coenzyme transport and metabolism # Function: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 # 1 180 2 181 181 355 99.0 2e-98 MILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARIEHHRQGRPAHWRTVERW QHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINAEIQSLIA ACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQQLAAAANEVWLVVSGIGVKIK >gi|223713588|gb|ACDM01000010.1| GENE 14 14184 - 14927 862 247 aa, chain + ## HITS:1 COG:ECs2787 KEGG:ns NR:ns ## COG: ECs2787 COG0368 # Protein_GI_number: 15832041 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 247 1 247 247 416 99.0 1e-116 MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCG APLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFV VLAKILVLSELALRGEPILASLAAACAISRGTAALLMYRHRYAREEGLGNVFIGKIDGRQ TCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGEL VFLLALL >gi|223713588|gb|ACDM01000010.1| GENE 15 14939 - 16018 710 359 aa, chain + ## HITS:1 COG:ECs2786 KEGG:ns NR:ns ## COG: ECs2786 COG2038 # Protein_GI_number: 15832040 # Func_class: H Coenzyme transport and metabolism # Function: NaMN:DMB phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1 359 1 359 359 642 100.0 0 MQTLANLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALGVQLAGMPGLNGIPHVGK KAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVLAAQAGANVHVIDVGIDTA EPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYTRELAKNGVTLFGVGELGMAN TTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVVRRAITLNQPNPQDGVNVLAKVG GFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAACQMSPAIKPYLIPSHLSAEKGARIA LSHLGLEPFLNMDMRLGEGSGAALAMPIIEAACAIYNNMGELAASKIVLPGNTTSDLNS >gi|223713588|gb|ACDM01000010.1| GENE 16 16083 - 17015 636 310 aa, chain + ## HITS:1 COG:ECs2785 KEGG:ns NR:ns ## COG: ECs2785 COG1376 # Protein_GI_number: 15832039 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 310 1 310 310 602 99.0 1e-172 MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSLTVTVPDHNTQPLETFAAQYGQG LSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVF PIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLY AIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE PDGSKWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPV QISSGSRQMF >gi|223713588|gb|ACDM01000010.1| GENE 17 17472 - 18389 493 305 aa, chain + ## HITS:1 COG:ECs2784 KEGG:ns NR:ns ## COG: ECs2784 COG0583 # Protein_GI_number: 15832038 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 534 100.0 1e-152 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE VVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDCPGQSVD VNAIAQMNLFLPSDYSAVRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPE SAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ WQLVS >gi|223713588|gb|ACDM01000010.1| GENE 18 18563 - 19441 614 292 aa, chain + ## HITS:1 COG:ECs2783 KEGG:ns NR:ns ## COG: ECs2783 COG0583 # Protein_GI_number: 15832037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 292 25 316 316 575 100.0 1e-164 MLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLA DLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLHNGEAD IGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQITPLTLESIAKWPLITYRQGITGR SRIDDAFARKGLLADIILSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEKNLIRLDTRHL FDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQVMENSEEEIDYQI >gi|223713588|gb|ACDM01000010.1| GENE 19 19748 - 21202 826 484 aa, chain + ## HITS:1 COG:yeeO KEGG:ns NR:ns ## COG: yeeO COG0534 # Protein_GI_number: 16129928 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli K12 # 1 484 64 547 547 873 99.0 0 MNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIFMENACVLLMGVLSTFLVSWLG KDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARVATRQSLVIMTLFAV LLATLIHHFGEQIIDFVAGDATTDVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTK IPLLINGSLNILNIIISGILIYGLFSWPGLGFVGAGLGLTISRYIGAVAILWVLAIGFNP ALRISLKSYFKPLNFSIIWEVMGIGIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIA FSIAALINLPGSALGSASTIITGRRLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFA GVMASFYTQDPQVKHVVVILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWG CRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKP VVSE >gi|223713588|gb|ACDM01000010.1| GENE 20 21832 - 22548 714 238 aa, chain - ## HITS:1 COG:yeeN KEGG:ns NR:ns ## COG: yeeN COG0217 # Protein_GI_number: 16129927 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 238 1 238 238 441 100.0 1e-124 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN IGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRDVTEEEGNIVIYTEPTDLHKG IAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDVQKVYHNVANL >gi|223713588|gb|ACDM01000010.1| GENE 21 22891 - 24345 1173 484 aa, chain - ## HITS:1 COG:ECs2779 KEGG:ns NR:ns ## COG: ECs2779 COG0775 # Protein_GI_number: 15832033 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Escherichia coli O157:H7 # 1 484 1 484 484 999 100.0 0 MNNKGSGLTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGLFVYPSLTVT WDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLTLLYQDYGAHISVQPSQHE IPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTEFSPLSHFDARRVD FSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPYIALSCAGGNWIT AETEAPEEAISDLAWKKHQMPAWHLITADGQGITLVNIGVGPSNAKTICDHLAVLRPDVW LMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSG RPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESATIAAQGYRFRVPY GTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNE PPFR >gi|223713588|gb|ACDM01000010.1| GENE 22 24447 - 25763 1019 438 aa, chain - ## HITS:1 COG:ECs2778 KEGG:ns NR:ns ## COG: ECs2778 COG0477 # Protein_GI_number: 15832032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 438 1 438 438 798 98.0 0 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA MGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTI GWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGL VSLISMMTTDVQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIP VIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSC LTIPCFAWLADRFGRRRVYITGALIGMLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLA GCLISAITALLMKDNQRA >gi|223713588|gb|ACDM01000010.1| GENE 23 26078 - 27130 279 350 aa, chain + ## HITS:1 COG:ECs2777 KEGG:ns NR:ns ## COG: ECs2777 COG0859 # Protein_GI_number: 15832031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 1 350 1 350 350 646 96.0 0 MFLVSLLRRIAFSYYDYKAYNFNIEKTDFVVIHIPDQIGDAMAIFPVIRALELHKIKHLL IVTSTINLEVFNALKLEQTKLTLVTMTMQDHATLKEIKDLAKNITLQYGTPDLCIEAMRK KNLKTMIFISQLKAKTNFQVVGLTMKCYSPLCKNASRMDQNLRTPVPMTCAFMMREAGFP VVRSIYELPLSDDVLDEVREEMRSLGSYIALNLDGSSQERTFSLSIAENLIAKIQSETDI PIVIVYGPKGEDKARALVDCYNNVYRLSLSPSIKRSAAIIKDAYIAITPDTSILHMASAY NTPVVAIYADYKTRWPAMADVSESVVVGQKIDNISLDEFAKALKSVLARI >gi|223713588|gb|ACDM01000010.1| GENE 24 27258 - 27905 52 215 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1065 NR:ns ## KEGG: APECO1_1065 # Name: not_defined # Def: putative autotransporter # Organism: E.coli_APEC # Pathway: not_defined # 1 215 438 652 652 358 98.0 6e-98 MQTVDISLVAGPADASQSILKNNQSSLKGDFTDSAELHLVLHDISGNPIKDSEGMEFVQS GTNVPYMKISAIDYSQNINGDYKATVTGDGEGIATLIPVLNGVHQAGLSTTIEFISAETR PMTGTVSVNSANLPTASFPSQGFTGAYYQLNNDNFAPGKTAADYSFSSSASWVGVDATGK VTFKNDGDSNTVIITAPPRSGGAIYQTVPPESRSV >gi|223713588|gb|ACDM01000010.1| GENE 25 27954 - 29216 447 420 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1065 NR:ns ## KEGG: APECO1_1065 # Name: not_defined # Def: putative autotransporter # Organism: E.coli_APEC # Pathway: not_defined # 1 420 1 420 652 607 99.0 1e-172 MKANFTLSDGDKAVTDADGKAKVTLKGTKAGAHTVTASMVGGKSEQLVVNFTADTLTAQV NLNVTEDNFIANNIGMTRLQATVTDGNGNPVEGIKVNFRGTSVTLSSTSVETDDQVFAEI LVTSTEVGLKTVSASLADKPTEVISRLLNAKVDVNSATITSQEIPEGQVMVAQDIAVKAH VNDQFGNPVTHQPATFSAAPSSQMIISQNTVSTNTQGVAEVTMTSERNGSYTVKASLANG ASLEKQLEAIDEKLTLTSSPLIGVNAPKGATLTATLTSANGTPVEGQVINFSVTLEGATL SGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNPSTAHVASFIAD PSTIAATNSDLSTLKATVEDGSGNLIEGLTVYFALKSGSTTLTSLTAVTDQNGIATTNVR >gi|223713588|gb|ACDM01000010.1| GENE 26 29252 - 29422 60 56 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_1068 NR:ns ## KEGG: ECIAI39_1068 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 56 1 56 56 76 100.0 3e-13 MTATLENGDSMQQTVNYVPNVTNAEITLAASKDPVIADNNDLTTLTAPSLIQRAMR >gi|223713588|gb|ACDM01000010.1| GENE 27 29349 - 30098 461 249 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1064 NR:ns ## KEGG: APECO1_1064 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 249 20 268 268 511 99.0 1e-144 MSKKYQPLLITHYMSTWVTITEAVEITTKAIKQKITPSDIYRHALSGNILLLVYFQSPVI LKKIQTFNGKIKFRQFVGDLLDKLCMLDRDGFIYGQNLRLCTEARYICPVQQIIDTPLLR KLNQFRTFVRNVRPGDELDVQAQVSEKNLTPPPGNSSGNLEQQIASTSQLIGSLLAEDMN SEQAANIARGWASSQASGVMTDWLSRFGTARITLGVDEDFSLKNSRDGNPRKWRFDATNS ELCAERHEC >gi|223713588|gb|ACDM01000010.1| GENE 28 30749 - 32770 1649 673 aa, chain - ## HITS:1 COG:YPO1906 KEGG:ns NR:ns ## COG: YPO1906 COG1629 # Protein_GI_number: 16122154 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 1 673 1 673 673 1276 99.0 0 MKMTRLYPLALGGLLLPAIANAQTSQQDESTLVVTASKQSSRSASANNVSSTVVSAPELS DAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQDFYNPAVTLYVDGVPQLSTNT IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFN LSGPIQDGLLYGSVTLLRQVDDGDMINPATGSDDLGGTRASIGNVKLRLAPDDQPWEMGF AASRECTRATQDAYVGWNDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYTTDDWVFNLIS AWQQQHYSRAFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFGLYRQNTREKLNSA YDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMLGNPF GDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFVAEKSIN YELGTRYETADVTLQAATFYTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPG WSWDINGNVIRSEFTNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALMPRLAVNLVGP HYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYMNGSSAVAQVNM GRTVGINTRIDFF >gi|223713588|gb|ACDM01000010.1| GENE 29 32901 - 34478 997 525 aa, chain - ## HITS:1 COG:YPO1907 KEGG:ns NR:ns ## COG: YPO1907 COG1021 # Protein_GI_number: 16122155 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Yersinia pestis # 1 525 1 525 525 1036 99.0 0 MNSSFESLIEQYPLPIAEQLRHWAARYASRIAVVDAKGSLTYSALDAQVDELAAGLSSLG LRSGEHVIVQLPNDNAFVTLLFALLRLGVIPVLAMPSQRALDIDALIELAQPVAYVIHGE NHAELARQMAHKHACLRHVLVAGETVSDDFTPLFSLHGERQAWPQPDVSATALLLLSGGT TGTPKLIPRRHADYSYNFSASAELCGISQQSVYLAVLPVAHNFPLACPGILGTLACGGKV VLTDSASCDEVMPLIAQERVTHVALVPALAQLWVQAREWEDSDLSSLRVIQAGGARLDPT LAEQVIATFDCTLQQVFGMAEGLLCFTRLDDPHATILHSQGRPLSPLDEIRIVDQDENDV APGETGQLLTRGPYTISGYYRAPAHNTQAFTAQGFYRTGDNVRLDEVGNLHVEGRIKEQI NRAGEKIAAAEVESALLRLAEVQDCAVVAAPDTLLGERICAFIIAQQVPTDYQQLRQQLT RMGLSAWKIPDQIEFLDHWPLTAVGKIDKKRLTALAVDRYRHSAQ >gi|223713588|gb|ACDM01000010.1| GENE 30 34482 - 35285 206 267 aa, chain - ## HITS:1 COG:YPO1908 KEGG:ns NR:ns ## COG: YPO1908 COG3208 # Protein_GI_number: 16122156 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted thioesterase involved in non-ribosomal peptide biosynthesis # Organism: Yersinia pestis # 1 267 1 267 267 525 99.0 1e-149 MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRH LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQELMSLFLPLLRADFYATESYH YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF FTQIVRHFPHAFSAMTAWQKQPSTSER >gi|223713588|gb|ACDM01000010.1| GENE 31 35282 - 36382 442 366 aa, chain - ## HITS:1 COG:YPO1909 KEGG:ns NR:ns ## COG: YPO1909 COG4693 # Protein_GI_number: 16122157 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Oxidoreductase (NAD-binding), involved in siderophore biosynthesis # Organism: Yersinia pestis # 1 366 1 366 366 699 99.0 0 MMPSASPKQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTS PEQITRMPDIACIVVRSTVAGGTGTQLARHFLTRGVHVIQEHPLHPDDISSLQTLAQEQG CCYWVNTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDA AAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSL EASYGPVIWSSSLFVADHQENAHSLYRRPEILRDLPGLMRSAAPLSWRDCCETVGPEGVS WLLHQLRSNLAGEHPPAACQSVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFYND DDKEAL >gi|223713588|gb|ACDM01000010.1| GENE 32 36379 - 45858 5763 3159 aa, chain - ## HITS:1 COG:YPO1910_1 KEGG:ns NR:ns ## COG: YPO1910_1 COG3321 # Protein_GI_number: 16122158 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Polyketide synthase modules and related proteins # Organism: Yersinia pestis # 1 1911 1 1911 1911 3727 99.0 0 MDNLRFSSAPTADSIDASIAQHYPDCEPVAVIGYACHFPESPDGETFWQNLLEGRECSRR FTREELLAVGLDAAIIDDPHYVNIGTVLDNADCFDATLFGYSRQEAESMDPQQRLFLQAV WHALEHAGYAPGAVPHKTGVFASSRMSTYPGREALNVTEVAQVKGLQSLMGNDKDYIATR AAYKLNLHGPALSVQTACSSSLVAVHLACESLRAGESDMAVAGGVALSFPQQAGYRYQPG MIFSPDGHCRPFDASAEGTWAGNGLGCVVLRRLKDALLSGDPIISVILSSAVNNDGNRKV GYTAPSVAGQQAVIEEALMLAAIDDRQVGYIETHGTGTPLGDAIEIEALRNVYAPRPQDR RCALGSVKSNMGHLDTAAGIAGLLKTVLAVSRGQIPPLLNFHTPNPALKLEESPFTVPVS AQAWQDEMRYAGVSSFGIGGTNCHMIVASLPDALNARLPNTDGGRKSTALLLSAASDSAL RRLATDYAGALRKNADASDLAFTALHARRLDLPFRLAVPLNRETADALSTWASEKSGAQV YSGHGASGKQVWLFTGQGSHWRTMGQTMYQHSTAFADTLDRCFSACSEMLTPSLREAMFN PDSAQLDNMAWAQPAIVAFEIAMAAHWRAEGLKPDFAIGHSVGEFAAAVVCGHYTIEQVM PLVCRRGALMQQCASGAMVAVFADEDTLMPLARQFELDLAANNGTQHTVFSGPEARLAVF CATLSQHDINYRRLSVTGAAHSALLEPILDRFQDACAGLHAEPGQIPIISTLTADVIDES TLNQADYWRRHMRQPVRFIQSIQVAHQLGARVFLEMGPDAQLVACGQREYRDNAYWIASA RRNKEASDVLNQALLQLYAAGVALPWADLLAGDGQRIAAPCYPFDTERYWKEGVSPACEP ADAALSAGLEVASRAATALDLPRLEALKQCATRLHAIYVDQLVQRCTGDAIENGVDAMTI MRRGRLLPRYQQLLQRLLNNCVVDGDYRCTDGRYVRARPIEHQQRESLLTELAGYCEGFQ AIPDTIARAGDRLYEMMSGAEEPVAIIFPQSASDGVEVLYQEFSFGRYFNQIAAGVLRGI VQTRQPRQPLRILEVGGGTGGTTAWLLPELNGVPALEYHFTDISALFTRRAQQKFADYDF VKYSELDLEKEAQSQGFQAQSYDLIVAANVIHATRHIGRTLDNLRPLLKPGGRLLMREIT QPMRLFDFVFGPLVLPLQDLDAREGELFLTTAQWQQQCRHAGFSKVAWLPQDGSPTAGMS EHIILATLPGQAVSAVTFTAPSEPVLGQALTDNGDYLADWSDCAGQPERFNARWQEAWRL LSQRHGDALPVEPPPVAAPEWLGKVRLSWQNEAFSRGQMRVEARHPAGEWLPLSPAAPLP APQTHYQWRWTPLNVASIDHPLTFSFSAGTLARSDELAQYGIIHDPHASSRLMIVEESED TLALAEKVIAALTASAAGLIVVTRRAWRVEENEALSASHHALWALLRVAANEQPERLLAA IDLAENTPWETLHQGLSAVSLSQRWLAARGDTLWLPSLSPNTGCAAELPANVFTGDSRWH LVTGAFGGLGRLAVNWLREKGARRIALLAPRVDESWLRDVEGGQTRVCRCDVGDAGQLAT VLDDLAANGGIAGAIHAAGVLADAPLQELDDHQLAAVFAVKAQAASQLVQTLRNHDGRYL ILYSSAAATLGAPGQSAHALACGYLDGLAQQFSTLDAPKTLSVAWGAWGESGRAATPEML ATLASRGMGALSDAEGCWHLEQAVMRGAPWRLAMRVFTDKMPPLQQALFNISATEKAATP VIPPADDNAFNGSLSDETAVMAWLKKRIAVQLRLSDPASLHPNQDLLQLGMDSLLFLELS SDIQHYLGVRINAERAWQDLSPHGLTQLICSKPEATPAASQPEVLRHDADERYAPFPLTP IQHAYWLGRTHLIGYGGVACHVLFEWDKRHDEFDLAILEKAWNQLIARHDMLRMVVDADG QQRILATTPEYHIPRDDLRALSPEEQRIALEKRRHELSYRVLPADQWPLFELVVSEIDDC HYRLHMNLDLLQFDVQSFKVMMDDLAQVWRGETLAPLAITFRDYVMAEQARRQTSAWHDA WDYWQEKLPQLPLAPELPVVETPPETPHFTTFKSTIGKTEWQAVKQRWQQQGVTPSAALL TLFAATLERWSRTTTFTLNLTFFNRQPIHPQINQLIGDFTSVTLVDFNFSAPVTLQEQMQ QTQQRLWQNMAHSEMNGVEVIRELGRLRGSQRQPLMPVVFTSMLGMTLEGMTIDQAMSHL FGEPCYVFTQTPQVWLDHQVMESDGELMFSWYCMDNVLEPGAAEAMFNDYCAILQAVIAA PESLKTLASGIAGHIPRRRWPLNAQADYDLRDIEQATLEYPGIRQARAEITEQGALTLDI VMADDPSPSAAMPDEHELTQLALPLPEQAQLDELEATWRWLEARALQGIAATLNRHGLFT TPEIAHRFSAVVQALSAQASHQRLLRQWLQCLTEREWLIREGESWRCRIPLSEIPEPQEA CPQSQWSQALAQYLETCIARHDALFSGQCSPLELLFNEQHRVTDALYRDNPASACLNRYT AQIAALCSAERILEVGAGTAATTAPVLKATRNTRQSYHFTDVSAQFLNDARARFHDESQV SYALFDINQPLDFTAHPEAGYDLIVAVNVLHDASHVVQTLRRLKLLLKAGGRLLIVEATE RNSVFQLASVGFIEGLSGYRDFRRRDEKPMLTRSAWQEVLVQAGFANELAWPAQESSPLR QHLLVARSPGVNRPDKKAVSRYLQQRFGTGLPILQIRQREALFTPLHAPTEPAKPTPVAG GNSALEKQVAELWQSLLSRPVARHHDFFELGGDSLMATRMVAQLNRRGIARANLQDLFNH STLSDFCAHLQAATSGEDNPIPLCQGDGEETLFVFHASDGDISAWLPLANALNRRVFGLQ AKSPQRFATLDQMIDEYVGCIRRQQPHGPYVLAGWSYGAFLAAGAAQRLYAKGKQVRMVL IDPVCRQDFCCENRAALLRLLAEGQTPLALPEHFDQQTPDSQLADFISLAKTVGMVSQNL TLQAAETWLDNIAHLLRLLTEHTPGESVPVPCLMVYAAGRPARWTPAETEWQGWINNADD AVIEASHWQIMMEAPHVQACAQHITRWLCATSTQPENTL >gi|223713588|gb|ACDM01000010.1| GENE 33 45946 - 52053 3464 2035 aa, chain - ## HITS:1 COG:YPO1911_2 KEGG:ns NR:ns ## COG: YPO1911_2 COG1020 # Protein_GI_number: 16122159 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Yersinia pestis # 111 1491 1 1381 1381 2730 99.0 0 MISGAPSQDSLLPDNRHAADYQQLRERLIQELNLTPQQLHEESNLIQAGLDSIRLMRWLH WFRKNGYRLTLRELYAAPTLAAWNQLMLSRSPENAEEETPPDESSWPNMTESTPFPLTPV QHAYLTGRMPGQTLGGVGCHLYQEFEGHCLTASQLEQAITTLLQRHPMLHIAFRPDGQQV WLPQPYWNGVTVHDLRHNDAESRQAYLDALRQRLSHRLLRVEIGETFDFQLTLLPDNRHR LHVNIDLLIMDASSFTLFFDELNALLAGESLPAIDTRYDFRSYLLHQQKINQPLRDDALA YWLAKASTLPPAPVLPLACEPATLCEVRNTRRRMIVPATRWHAFSNRAGEYGVTPTMALA TCFSAVLARWGGLTRLLLNITLFDRQPLHPAVGAMLADFTNILLLDTACDGDTVSNLARK NQLTFTEDWEHRHWSGVELLRELKRQQRYPHGAPVVFTSNLGRSLYSSRAESPLGEPEWG ISQTPQVWIDHLAFEHHGEVWLQWDSNDALFPPALVETLFDAYCQLINQLCDDESAWQKP FADMMPASQRAIRERVNATGAPIPEGLLHEGIFRIALQQPQALAVTDMRYQWNYHELTDY ARRCAGRLIECGVQPGDNVAITMSKGAGQLVAVLAVLLAGAVYVPVSLDQPAARREKIYA DASVRLVLICQHDASAGSDDIPVLAWQQAIEAEPIANPVVRAPTQPAYIIYTSGSTGTPK GVVISHRGALNTCCDINTRYQVGPHDRVLALSALHFDLSVYDIFGVLRAGGALVMVMENQ RRDPHAWCELIQRHQVTLWNSVPALFDMLLTWCEGFADATPENLRAVMLSGDWIGLDLPA RYRAFRPQGQFIAMGGATEASIWSNACEIHDVPAHWRSIPYGFPLTNQRYRVVDEQGRDC PDWVPGELWIGGIGVAEGYFNDPLRSEQQFLTLPDERWYRTGDLGCYWPDGTIEFLGRRD KQVKVGGYRIELGEIESALSQLAGVKQATVLAIGEKEKTLAAYVVPQGEAFCVTDHRNPA LPQAWHTLAGTLPCCAISPEISAEQVADFLQHRLLKLKPGHTAGADPLPLMNSLAIQPRW QAVVERWLAFLVTQRRLKPAAEGYQVCAGEEREDEHPHFSGHDLTLSQILRGARNELSLL NDAQWSPESLAFNHPASAPYIQELATICQQLAQRLQRPVRLLEVGTRTGRAAESLLAQLN AGQIEYVGLEQSQEMLLSARQRLAPWPGARLSLWNADTLATHAHSADIIWLNNALHRLLP EDPGLLATLQQLAVPGALLYVMEFRQLTPSALLSTLLLTNGQPEALLHNSADWAALFSAA GFNCQHGDEVAGLQRFLVQCPDRQVRRDPRQLQAALAGSLPGWMVPQRIVFLDALPLTAN GKIDYQALKRRHTPEAENPAEADLPQGDIEKQVAALWQQLLSTGNVTRETDFFQQGGDSL LATRLTGQLHQAGYEAQLSDLFNHPRLADFAATLRKTDVPVEQPFVHSPEDRYQPFALTD VQQAYLVGRQPGFALGGVGSHFFVEFEIADLDLTRLETVWNRLIARHDMLRAIVRDGQQQ VLEQTPPWVIPAHTLHTPEEALRVREKLAHQVLNPEVWPVFDLQVGYVDGMPARLWLCLD NLLLDGLSMQILLAELEHGYRYPQQLLPPLPVTFRDYLQQPSLQSPNPDSLAWWQAQLDD IPPAPALPLRCLPQEVETPRFARLNGALDSTRWHRLKKRAADAHLTPSAVLLSVWSTVLS AWSAQPEFTLNLTLFDRRPLHPQINQILGDFTSLMLLSWHPGESWLHSAQSLQQRLSQNL NHRDVSAIRVMRQLAQRQNVPAVPMPVVFTSALGFEQDNFLARRNLLKPVWGISQTPQVW LDHQIYESEGELRFNWDFVAALFPAGQVERQFEQYCALLNRMAEDESGWQLPLAALVPPV KHAGQCAERSPRVCPEHSQPHIAADESTVSLICDAFREVVGESVTPAENFFEAGATSLNL VQLHVLLQRHEFSTLTLLDLFTHPSPAALADYLAGVATVEKTKRPRPVRRRQRRI >gi|223713588|gb|ACDM01000010.1| GENE 34 52244 - 53203 509 319 aa, chain - ## HITS:1 COG:YPO1912 KEGG:ns NR:ns ## COG: YPO1912 COG2207 # Protein_GI_number: 16122160 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Yersinia pestis # 1 319 1 319 319 647 99.0 0 MTESPQTQSEISIHQLVVGKPANDGNIPAQCELLRCSLQEGMDILLWRGHFARPETLQLH DDLGRINFSCILEGTSRFAIQGLRRHTDWELARNRHYITHTPDCRGSASYCGRFESITLS FSPETLALWVPDISAVIKNKIDSHCCCQQQRCNAETHLTAQALRHALMRMHGGFSHEQKP STLWLQGQSLVMLSLVLDEHREDASCLSCHFNPMERQKLLRAKDLLLADLTQAPGVAELA RESGLSVLKIKRGFRVLFNNSVYGLFQAERMQEARRRLANGNTSVMTVAADLGYANASHF SAAFQKQFGVTPSTFKRGM >gi|223713588|gb|ACDM01000010.1| GENE 35 53460 - 55172 194 570 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 330 535 295 507 563 79 31 2e-13 MALAGLAALTSLGALLFLAWSLRDIRATPDAIPAWPLGGVIGCVVLTFVLRLQAFNTSHY AAFHLENILRSRLARKALQLPPGVLQQMGSGSVAKVMLDDVKSLHIFVADSTPLYARAII MPLATIVILFWLDWRLAIATLGVLAFGSVVLVLARQRSENMAQRYHKAREQVSAAVIEFV QAMPVVRTFDSGSTSFLRYQRALEEWVDVLKTWYRKAGFSARFSFSILNPLPTLFVLIWS GYGLLHYGSFDFIAWVAVLLLGSGMAEAVMPMMMLNNLVAQTRLSIQRIYQVLAMPELSL PQSDQQPQEASITFEQVSFHYPQARTGAALQEVSFHVPAGQIVALVGPSGAGKSTVARLL LRYADPDKGHIRIGGVDLRDMQTDTLMKQLSFVFQDNFLFADTIANNIRLGAPDTPLEAV IAAARVAQAHDFISALPEGYNTRVGERGVFLSGGQRQRITIARALLQDRPILVLDEATAF ADPENEAALIKALAAAMRGRTVIMVAHRLSMVTQADVILLFSDGQLREMGNHTQLLAQGG LYQRLWQHYQQAQHWVPGGTQEEVVENERQ >gi|223713588|gb|ACDM01000010.1| GENE 36 55159 - 56961 218 600 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 337 559 16 242 329 88 30 3e-16 MKDNNPADNLAWRVIWRQLISSVGSQARMLRRSMLALLLAAFMQGIAFACLYPIIDALLR GDAPQLLNWAMAFSVAAIVTLVLRWYGLGFEYRGHLAQATHELRLRLGEQLRRVPLDKLQ RGRAGEMNALLLGSVDENLNYVIAIANILLLTIVTPLTASLATLWIDWRLGLVMLLIFPL LVPFYYWRRPAMRRQMQTLGEAHQRLSGDIVEFAQGMMVLRTCGSDADKSRALLAHFNAL ENLQTRTHRQGAGATMLIASVVELGLQVVVLSGIVWVVTGTLNLAFLIAAVAMIMRFAEP MAMFISYTSVVELIASALQRIEQFMAIAPLPVAEQSEMPERYDIRFDNVSYRYEEGDGHA LNHVSLTFPAASMSALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRRLTPEQLNSL ISVVFQDVWLFDDTLLANIRIARPQATRQEVEEAARAAQCLEFISRLPQGWLTPMGEMGG QLSGGERQRISIARALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRL STIAGAGNILVMEEGQVVEQGTHAQLLSHHGRYQALWQAQMAARVWRDDGGSASGEWVHE >gi|223713588|gb|ACDM01000010.1| GENE 37 56954 - 58234 967 426 aa, chain + ## HITS:1 COG:YPO1915 KEGG:ns NR:ns ## COG: YPO1915 COG0477 # Protein_GI_number: 16122163 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 1 426 1 426 426 665 99.0 0 MSDVQSNVKPLTLTTGRVIFAIAGVYVTQSLVSALSMQSLPALVRAAGGSLALAGATTLF MLPWALKFIWAPWIERWRLPPGSQERRSRMLILRGQVALAAILTIAAAIGWFGREGGFPD TQIVALFVLFMVAGTVASTIDIASDGFCVDQLTRTGYGWGNSVQVGGSYLGMMCGGGVFL MLSAASGWPVAMLMMAVLIMALSLPLWRITEPTRTATIPHVPALGYALRRKQARLGLLLV LMLNSGMRFVLPLLAPLLLDHGLSMSALGALFSGGNIAAGIAGTLAGGLLMKYTSPGRAL LTAYGVQGIALLAVVMTLMMAPGHLLLQILQCLVIVQSISLACALVCLYATLMSLSSPLQ AGVDFTLFQCTDAAIAILAGVIGGVVAQHFGYAACFLFAGAFTLLAAWVAYIRLHSAREL MTSAID >gi|223713588|gb|ACDM01000010.1| GENE 38 58262 - 59566 1173 434 aa, chain + ## HITS:1 COG:YPO1916 KEGG:ns NR:ns ## COG: YPO1916 COG0147 # Protein_GI_number: 16122164 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Yersinia pestis # 1 434 1 434 434 878 100.0 0 MKISEFLHLALPEEQWLPTISGVLRQFAEEECYVYERQPCWYLGKGCQARLHINADGTQA TFIDDAGEQKWAVDSIADCARRFMAHPQVKGRRVYGQVGFNFAAHARGIAFNAGEWPLLT LTVPREELIFEKGNVTVYADSADGCRRLCEWVKEAGTTTQNAPLAVDTALNGEAYKQQVA RAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPE LVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVC QPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNA IMQIEKTPRELYSGAILLLDDTRFDAALVLRSVFQDSQRCWIQAGAGIIAQSTPERELTE TREKLASIAPYLMV >gi|223713588|gb|ACDM01000010.1| GENE 39 59760 - 60986 371 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1 394 13 397 397 147 28 5e-34 PSDKPFKVSDSHSLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIR KMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVI GNLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGV TTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEID FTNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGD HNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQER NTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP >gi|223713588|gb|ACDM01000010.1| GENE 40 61360 - 62157 315 265 aa, chain - ## HITS:1 COG:ECs2774 KEGG:ns NR:ns ## COG: ECs2774 COG3228 # Protein_GI_number: 15832028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 265 14 278 278 530 99.0 1e-151 MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAERFLQQKRLVPLQGFEL NSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQ SWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFIPLREVAGWEHDL HAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQ FYQQDPLQRLHHANDTDSFSATNVH >gi|223713588|gb|ACDM01000010.1| GENE 41 62910 - 63440 263 176 aa, chain - ## HITS:1 COG:yodB KEGG:ns NR:ns ## COG: yodB COG3038 # Protein_GI_number: 16129920 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli K12 # 1 176 11 186 186 329 100.0 2e-90 MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV SPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK >gi|223713588|gb|ACDM01000010.1| GENE 42 63783 - 64454 446 223 aa, chain - ## HITS:1 COG:yodA KEGG:ns NR:ns ## COG: yodA COG3443 # Protein_GI_number: 16129919 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted protein # Organism: Escherichia coli K12 # 8 223 1 216 216 429 98.0 1e-120 MTLEETVLAIRLHKLAVALGVFMVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVQNR KLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYATDIEMIGIEDG IVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRK SSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH >gi|223713588|gb|ACDM01000010.1| GENE 43 64690 - 65325 460 211 aa, chain - ## HITS:1 COG:yedZ KEGG:ns NR:ns ## COG: yedZ COG2717 # Protein_GI_number: 16129918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 211 1 211 211 335 98.0 4e-92 MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLATLL ITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYVLLELGVNNLALLGKELITRPYLTL GIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYA GLALLLLALRYKKLRSLFNRLRKQVHNKLSV >gi|223713588|gb|ACDM01000010.1| GENE 44 65326 - 66273 854 315 aa, chain - ## HITS:1 COG:ECs2709 KEGG:ns NR:ns ## COG: ECs2709 COG2041 # Protein_GI_number: 15831963 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Escherichia coli O157:H7 # 1 315 20 334 334 634 99.0 0 MKRRQVLKALGISATALSLPHAAHADLLSWFKGNDRPPAPAGKALEFSKPAAWQNNLPLT PADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEE RIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGG LKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLT RERPPTTWNLAAPDEYGFYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAD QVASLYRGLDLRENF >gi|223713588|gb|ACDM01000010.1| GENE 45 66439 - 66852 292 137 aa, chain - ## HITS:1 COG:yedX KEGG:ns NR:ns ## COG: yedX COG2351 # Protein_GI_number: 16129916 # Func_class: R General function prediction only # Function: Transthyretin-like protein # Organism: Escherichia coli K12 # 1 137 1 137 137 270 99.0 5e-73 MLKRYLVLSVATAAFSLPSLVNAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQL NTAKTDKDGRIKALWPEQTVTTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHY HVPLLLSQYGYSTYRGS >gi|223713588|gb|ACDM01000010.1| GENE 46 66937 - 67656 169 239 aa, chain + ## HITS:1 COG:ECs2707 KEGG:ns NR:ns ## COG: ECs2707 COG0745 # Protein_GI_number: 15831961 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 460 99.0 1e-129 MNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSF SELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAG EIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK >gi|223713588|gb|ACDM01000010.1| GENE 47 68112 - 69014 290 300 aa, chain + ## HITS:1 COG:yedV KEGG:ns NR:ns ## COG: yedV COG0642 # Protein_GI_number: 16129914 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 300 153 452 452 573 99.0 1e-163 MLEQYKINSIIICIVAIILCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALP RELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQ KTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEI CFNVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTK INEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN >gi|223713588|gb|ACDM01000010.1| GENE 48 69112 - 69963 774 283 aa, chain - ## HITS:1 COG:yedU KEGG:ns NR:ns ## COG: yedU COG0693 # Protein_GI_number: 16129913 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli K12 # 1 283 1 283 283 577 100.0 1e-165 MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERY LPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFF EQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRF VISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGM NIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG >gi|223713588|gb|ACDM01000010.1| GENE 49 70556 - 71671 1250 371 aa, chain - ## HITS:1 COG:ompF KEGG:ns NR:ns ## COG: ompF COG3203 # Protein_GI_number: 16128896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 371 2 362 362 343 56.0 2e-94 MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDTSYA RFGVKGETQITSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELGSFDYGRNYGV AYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNYDFFGLVDGLDFAIQYQGKNSN RSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWSLAAKYDANNV YAAVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFDFGLRPSLGYV YSKGKDIKGVPGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKDDAAITGAAAD DQFAVGIVYQF >gi|223713588|gb|ACDM01000010.1| GENE 50 72322 - 72603 322 93 aa, chain + ## HITS:1 COG:no KEGG:SSON_2020 NR:ns ## KEGG: SSON_2020 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 93 35 127 127 166 97.0 2e-40 MEERLSRSPSGKLALWAFYTWCGYFVWAMARYIWVMSRIPDALVSGFESDLGSTAGKWLG ALVGFLFMALVGALLGSIAWYTRPRPARSRRYE >gi|223713588|gb|ACDM01000010.1| GENE 51 72643 - 73338 538 231 aa, chain + ## HITS:1 COG:yedJ KEGG:ns NR:ns ## COG: yedJ COG1418 # Protein_GI_number: 16129908 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Escherichia coli K12 # 1 231 1 231 231 419 97.0 1e-117 MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDI VSLAKNYPQRQRSSILAAEETRRLLREEFVQFPAEKIEAVCHAIAAHSFSAQIAPLTTEA KIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQYRPLDDKRYALDHFQTKLLK LPQTMQTVRGKQLAQHNAQFLVEFMAKLSAELAGENEGVDHKVIDAFSPAG >gi|223713588|gb|ACDM01000010.1| GENE 52 73405 - 74823 1312 472 aa, chain + ## HITS:1 COG:ECs2699 KEGG:ns NR:ns ## COG: ECs2699 COG0270 # Protein_GI_number: 15831953 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Escherichia coli O157:H7 # 1 472 1 472 472 956 99.0 0 MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENHWSAAILKRALANDSAW HRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHA VRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPF SLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRI IMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDIS GCFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVT RTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAK FRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRCSR >gi|223713588|gb|ACDM01000010.1| GENE 53 74804 - 75274 477 156 aa, chain + ## HITS:1 COG:vsr KEGG:ns NR:ns ## COG: vsr COG3727 # Protein_GI_number: 16129906 # Func_class: L Replication, recombination and repair # Function: DNA G:T-mismatch repair endonuclease # Organism: Escherichia coli K12 # 1 156 1 156 156 313 99.0 1e-85 MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCV IFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR GREKLTDEALSERLEEWICGEGASAQIDTQGIHLLA >gi|223713588|gb|ACDM01000010.1| GENE 54 75263 - 76183 963 306 aa, chain - ## HITS:1 COG:ECs2697 KEGG:ns NR:ns ## COG: ECs2697 COG0697 # Protein_GI_number: 15831951 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 448 99.0 1e-126 MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGH KLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIK TRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSHITLPVGMMA GAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPA LATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVI QDASSE >gi|223713588|gb|ACDM01000010.1| GENE 55 76362 - 77273 1153 303 aa, chain + ## HITS:1 COG:yedI KEGG:ns NR:ns ## COG: yedI COG2354 # Protein_GI_number: 16129904 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 303 3 305 305 503 99.0 1e-142 MAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWG VAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPA QSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIA LVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKAFSIVGTLAMFL VGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVAKMRG QAH >gi|223713588|gb|ACDM01000010.1| GENE 56 77352 - 77534 185 60 aa, chain + ## HITS:1 COG:ECs2695 KEGG:ns NR:ns ## COG: ECs2695 COG5475 # Protein_GI_number: 15831949 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli O157:H7 # 1 60 1 60 60 102 100.0 2e-22 MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV >gi|223713588|gb|ACDM01000010.1| GENE 57 77723 - 78640 710 305 aa, chain + ## HITS:1 COG:no KEGG:JW5832 NR:ns ## KEGG: JW5832 # Name: yedQ # Def: predicted diguanylate cyclase # Organism: E.coli_J # Pathway: not_defined # 1 305 7 311 564 619 99.0 1e-176 MENQSWLKKLARRLGPGHIVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANA LDKHLQYNVDKLIFLRNGMREALIAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPV NGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVST QPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDS NNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRE LALLA >gi|223713588|gb|ACDM01000010.1| GENE 58 78644 - 79399 646 251 aa, chain + ## HITS:1 COG:yedQ_2 KEGG:ns NR:ns ## COG: yedQ_2 COG2199 # Protein_GI_number: 16129902 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 73 251 1 179 179 349 99.0 2e-96 MEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTML LISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVI QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEA AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLADRRLYLAKQA GRNRVFASDNA >gi|223713588|gb|ACDM01000010.1| GENE 59 79396 - 80211 735 271 aa, chain - ## HITS:1 COG:yedP KEGG:ns NR:ns ## COG: yedP COG3769 # Protein_GI_number: 16129901 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1 271 1 271 271 538 99.0 1e-153 MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKT LGLQGLPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEISQVLNTLREKEHFKFTTFDD VDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNELGLQFMQGARFWH VLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVH LHDEDPARVWRTQREGPEGWREGLDHFFSAR >gi|223713588|gb|ACDM01000010.1| GENE 60 80510 - 80737 292 75 aa, chain - ## HITS:1 COG:no KEGG:G2583_2404 NR:ns ## KEGG: G2583_2404 # Name: yodD # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 75 6 80 80 112 100.0 4e-24 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA FELDIHDFSVSEVNR >gi|223713588|gb|ACDM01000010.1| GENE 61 80900 - 81088 324 62 aa, chain + ## HITS:1 COG:no KEGG:LF82_0529 NR:ns ## KEGG: LF82_0529 # Name: dsrB # Def: protein DsrB # Organism: E.coli_LF82 # Pathway: not_defined # 1 62 1 62 62 124 100.0 1e-27 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK AE >gi|223713588|gb|ACDM01000010.1| GENE 62 81132 - 81755 414 207 aa, chain - ## HITS:1 COG:ECs2690 KEGG:ns NR:ns ## COG: ECs2690 COG2771 # Protein_GI_number: 15831944 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 207 1 207 207 379 99.0 1e-105 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIH DASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLLISSKSIKPESLDDILGDI LKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIKRKI KTHNKQVIYHVVRLTDNVTNGIFVNMR >gi|223713588|gb|ACDM01000010.1| GENE 63 82045 - 82830 760 261 aa, chain - ## HITS:1 COG:fliR KEGG:ns NR:ns ## COG: fliR COG1684 # Protein_GI_number: 16129897 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Escherichia coli K12 # 1 261 1 261 261 365 98.0 1e-101 MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC EHLFSEIFNLLADIISELPLI >gi|223713588|gb|ACDM01000010.1| GENE 64 82839 - 83108 432 89 aa, chain - ## HITS:1 COG:STM1980 KEGG:ns NR:ns ## COG: STM1980 COG1987 # Protein_GI_number: 16765318 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Salmonella typhimurium LT2 # 1 89 1 89 89 98 95.0 3e-21 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI AIIIAGPWMLNLLLDYVRTLFTNLPYIIG >gi|223713588|gb|ACDM01000010.1| GENE 65 83118 - 83855 706 245 aa, chain - ## HITS:1 COG:ECs2687 KEGG:ns NR:ns ## COG: ECs2687 COG1338 # Protein_GI_number: 15831941 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 392 100.0 1e-109 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA QSFYS >gi|223713588|gb|ACDM01000010.1| GENE 66 83855 - 84220 262 121 aa, chain - ## HITS:1 COG:STM1978 KEGG:ns NR:ns ## COG: STM1978 COG3190 # Protein_GI_number: 16765316 # Func_class: N Cell motility # Function: Flagellar biogenesis protein # Organism: Salmonella typhimurium LT2 # 1 121 2 125 125 135 66.0 3e-32 MNNHATVQSSAPVSAAPLLQVSGALITIIALILAAAWLIKRLGFAPKRTGVNGLKISASA SLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEIPQTDFQSVMKNLLKRSGR S >gi|223713588|gb|ACDM01000010.1| GENE 67 84223 - 84636 543 137 aa, chain - ## HITS:1 COG:ECs2685 KEGG:ns NR:ns ## COG: ECs2685 COG1886 # Protein_GI_number: 15831939 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 245 100.0 1e-65 MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDI PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV RITDIITPSERMRRLSR >gi|223713588|gb|ACDM01000010.1| GENE 68 84633 - 85637 1052 334 aa, chain - ## HITS:1 COG:ECs2684 KEGG:ns NR:ns ## COG: ECs2684 COG1868 # Protein_GI_number: 15831938 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 649 100.0 0 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK >gi|223713588|gb|ACDM01000010.1| GENE 69 85642 - 86106 514 154 aa, chain - ## HITS:1 COG:ECs2683 KEGG:ns NR:ns ## COG: ECs2683 COG1580 # Protein_GI_number: 15831937 # Func_class: N Cell motility # Function: Flagellar basal body-associated protein # Organism: Escherichia coli O157:H7 # 1 154 1 154 154 289 100.0 2e-78 MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALD TFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKK NLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR >gi|223713588|gb|ACDM01000010.1| GENE 70 86211 - 87338 790 375 aa, chain - ## HITS:1 COG:fliK KEGG:ns NR:ns ## COG: fliK COG3144 # Protein_GI_number: 16129890 # Func_class: N Cell motility # Function: Flagellar hook-length control protein # Organism: Escherichia coli K12 # 1 375 1 375 375 519 96.0 1e-147 MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK GEPLVSEILADAQQADLLIPVDETPPVINDEQSTSTPLTTAQTMTLAAVAGNNTAKDEKA DDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKPTLFTKLTSAQLTTAQPDDAP GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS LQVRVTGNSGVDIFA >gi|223713588|gb|ACDM01000010.1| GENE 71 87335 - 87778 506 147 aa, chain - ## HITS:1 COG:fliJ KEGG:ns NR:ns ## COG: fliJ COG2882 # Protein_GI_number: 16129889 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis chaperone # Organism: Escherichia coli K12 # 1 147 1 147 147 206 99.0 2e-53 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST AALLAENRLDQKKMDEFAQRAAMRKPE >gi|223713588|gb|ACDM01000010.1| GENE 72 87797 - 89170 1527 457 aa, chain - ## HITS:1 COG:ZfliI KEGG:ns NR:ns ## COG: ZfliI COG1157 # Protein_GI_number: 15802376 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Escherichia coli O157:H7 EDL933 # 13 457 52 496 496 826 100.0 0 MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGS ETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRV LDGSGKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGL FAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPAD VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPS VFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEA GHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDK AIALWPQLEGYLQQGIFERADWEASLQGLERIFPTVS >gi|223713588|gb|ACDM01000010.1| GENE 73 89170 - 89856 822 228 aa, chain - ## HITS:1 COG:fliH KEGG:ns NR:ns ## COG: fliH COG1317 # Protein_GI_number: 16129887 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Escherichia coli K12 # 1 228 8 235 235 361 98.0 1e-100 MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI AEGRQQGHEQGYQEGLARGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV >gi|223713588|gb|ACDM01000010.1| GENE 74 89849 - 90844 1288 331 aa, chain - ## HITS:1 COG:ECs2678 KEGG:ns NR:ns ## COG: ECs2678 COG1536 # Protein_GI_number: 15831932 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Escherichia coli O157:H7 # 1 331 1 331 331 551 100.0 1e-157 MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN GLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLV DVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQ VENEQKAILLIVRRLAETGEMVIGSGEDTYV >gi|223713588|gb|ACDM01000010.1| GENE 75 90837 - 92495 1532 552 aa, chain - ## HITS:1 COG:fliF KEGG:ns NR:ns ## COG: fliF COG1766 # Protein_GI_number: 16129885 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Escherichia coli K12 # 1 552 1 552 552 962 99.0 0 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGI SQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPG RALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEG RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQ SGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEV DRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEALTREAMGFSEKRGD SLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRA EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREISDNDPRVVA LVIRQWINNDHE >gi|223713588|gb|ACDM01000010.1| GENE 76 92710 - 93024 427 104 aa, chain + ## HITS:1 COG:ECs2676 KEGG:ns NR:ns ## COG: ECs2676 COG1677 # Protein_GI_number: 15831930 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Escherichia coli O157:H7 # 1 104 1 104 104 143 99.0 8e-35 MSAIQGIEGVISQLQTTAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFT LGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV >gi|223713588|gb|ACDM01000010.1| GENE 77 93368 - 93700 321 110 aa, chain + ## HITS:1 COG:ECs1614 KEGG:ns NR:ns ## COG: ECs1614 COG2076 # Protein_GI_number: 15830868 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 110 1 110 110 186 98.0 8e-48 MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAY AIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSAPH >gi|223713588|gb|ACDM01000010.1| GENE 78 93869 - 94420 93 183 aa, chain + ## HITS:1 COG:ybcL KEGG:ns NR:ns ## COG: ybcL COG1881 # Protein_GI_number: 16128528 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Escherichia coli K12 # 1 183 1 183 183 340 96.0 1e-93 MKKLIVSSVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGA PEGTKSFAVTVYDPDAPTGSGWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDF GYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVDSNSSGALVGYMLNANKIATAEITPVY EIK >gi|223713588|gb|ACDM01000010.1| GENE 79 94554 - 94802 113 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLVAPNNILTRGSEVSRNLSCYEFDQLSHKIFETFQLDQWDNKAFLQDKDLLLDNSQYK IHIHREIILSDYYQQLDYASPN >gi|223713588|gb|ACDM01000010.1| GENE 80 95384 - 95908 -57 174 aa, chain - ## HITS:1 COG:Z5815 KEGG:ns NR:ns ## COG: Z5815 COG1943 # Protein_GI_number: 15804795 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 119 1 119 138 234 93.0 5e-62 MKKETDIRRGRHCVFLKHVHLVFVTKYRRQIFDHDATEKLRTYFSNVCADFEAERVEMDG GPDHVHLLINYPPKLAISSLVNSLKGVSSRLLRRDRPDIAVRYYDKGVLWSPGYFVSSCI LTYQLDLITTISAPNRISNVISIPLIIPSTSCNFPTLELHIVQTPDAKKSHVHF >gi|223713588|gb|ACDM01000010.1| GENE 81 95991 - 96260 85 89 aa, chain + ## HITS:1 COG:ECs5183 KEGG:ns NR:ns ## COG: ECs5183 COG0675 # Protein_GI_number: 15834437 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 77 1 77 382 153 96.0 8e-38 MRRFAGACRFVFNRALALQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQ QSLKDPERAYKNFFRLRHHAQTVCYLSRL >gi|223713588|gb|ACDM01000010.1| GENE 82 96142 - 96639 308 165 aa, chain - ## HITS:1 COG:ECs2670 KEGG:ns NR:ns ## COG: ECs2670 COG2135 # Protein_GI_number: 15831924 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 142 1 142 222 292 97.0 2e-79 MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVF WGYAPGWWDKPPLINARVETAATSHMFKPLWQHGRAICFADGWFEWKKEGDKKQPYFIYR ADGQAVFIAAIGSTPFERGDEAGRSFCKPAQGLSVTVAMAVRANL >gi|223713588|gb|ACDM01000010.1| GENE 83 96748 - 96981 349 77 aa, chain - ## HITS:1 COG:ECs2669 KEGG:ns NR:ns ## COG: ECs2669 COG0425 # Protein_GI_number: 15831923 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 77 1 77 77 145 100.0 2e-35 MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYT VLDIQQDGPTIRYLIQK >gi|223713588|gb|ACDM01000010.1| GENE 84 96978 - 98183 1462 401 aa, chain - ## HITS:1 COG:yedE KEGG:ns NR:ns ## COG: yedE COG2391 # Protein_GI_number: 16129876 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli K12 # 1 401 1 401 401 706 99.0 0 MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHA EEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGI IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKV SAASPLTQKPDQARRRFRLGMLVFFGLLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQI CFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGF GIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKT FGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA >gi|223713588|gb|ACDM01000010.1| GENE 85 98370 - 98783 519 137 aa, chain + ## HITS:1 COG:no KEGG:SDY_1087 NR:ns ## KEGG: SDY_1087 # Name: yedD # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 137 1 137 137 265 100.0 4e-70 MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT AECAAALDKAPLPTPLP >gi|223713588|gb|ACDM01000010.1| GENE 86 98817 - 100304 1510 495 aa, chain - ## HITS:1 COG:amyA KEGG:ns NR:ns ## COG: amyA COG0366 # Protein_GI_number: 16129874 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1 495 1 495 495 1033 99.0 0 MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYD LFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRV NADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVND YTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHI PAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEAS RMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLREN GVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCI AFSRSGTDEYPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQESVVTDENGEATFF CNGGSVSVWVIEEVI >gi|223713588|gb|ACDM01000010.1| GENE 87 100382 - 100747 474 121 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_1129 NR:ns ## KEGG: ECIAI39_1129 # Name: fliT # Def: flagellar biosynthesis protein FliT # Organism: E.coli_IAI39 # Pathway: Flagellar assembly [PATH:ect02040] # 1 121 1 121 121 204 100.0 6e-52 MNNAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAVQEIAHLTEEVAPSTTM QEQLRPMLRLILDNESKVKQLLQIRMDELAKLVGQSSVQKSVLSAYGDQGGFVLAPQDNL F >gi|223713588|gb|ACDM01000010.1| GENE 88 100747 - 101157 437 136 aa, chain - ## HITS:1 COG:ECs2664 KEGG:ns NR:ns ## COG: ECs2664 COG1516 # Protein_GI_number: 15831918 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Escherichia coli O157:H7 # 1 136 1 136 136 219 95.0 1e-57 MYTASGSKAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARLFMQDNNQQGKGVSLSK AINIIENGLRVSLDEDSKDELTQNLIALYSYMVRRLLQANLRNDVSAVEEVEALMRNIAD AWKESLLSPSLIQDPV >gi|223713588|gb|ACDM01000010.1| GENE 89 101172 - 102584 1437 470 aa, chain - ## HITS:1 COG:STM1960 KEGG:ns NR:ns ## COG: STM1960 COG1345 # Protein_GI_number: 16765298 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Salmonella typhimurium LT2 # 1 470 1 467 467 521 75.0 1e-147 MASFTSLGVGSNLPLDTLLNNLTIAEKKRLNPITQQQSDNTARLTAYGTLKSALEKFQTA NTALNKADLFKSTTVTSSNEDLKVSTEAGAAPGIYTISVTQLAQAQSLRTDSPTIIASTK DALGDESSDTRTIKITQDGRKEPLEIKLNKDQTSLGEISKAINDADSGISASIVKVKDGD YQLVLTASEGLANKMTISVEGDSKLNDLLAYDSKTNTGNMKELVNAQNAQLNVNGIDIER SSNKITDAPQGVTLDLTKKVTDVRVTVTKSNDKATEAIKGWVDSYNSLIDTFNTLTKYKE VDPGAEAQDKNNGALLGDSVVRTIQSGIRAQFANGASDGAFKTLNEIGIKQDGTTGKLKI DDDKLKKVLNENTASVRELLVGDGKETGITTKITTEVKGYLADDGIIDSAQDSINATLKK LTKQYLSVSASIDDTVARYTAQFTQLDTMMSKLNNTSTYLSQQFTAMSNS >gi|223713588|gb|ACDM01000010.1| GENE 90 102839 - 104332 1545 497 aa, chain + ## HITS:1 COG:STM2771 KEGG:ns NR:ns ## COG: STM2771 COG1344 # Protein_GI_number: 16766083 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Salmonella typhimurium LT2 # 1 497 1 506 506 386 60.0 1e-107 MAQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSSLRINSAKDDAAGQAIANRFTANIKG LTQASRNANDGISVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRL SEIDRVSGQTQFNGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTK LKAATAETTYFGSTVKLADANTLDADITATVKGTTTPGKRDGNIMSDANGKLYVKVAGSD KSPENGYYEVTVEDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTA TASITGAKLFKLEDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHD NVKVELGGSDGKTEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQ VDSLRSNLGAIQNRFDSAITNLGNTVNNLSSARSRIEDADYATEVSNMSRAQILQQAGTS VLAQANQTTQNVLSLLR >gi|223713588|gb|ACDM01000010.1| GENE 91 104498 - 105217 825 239 aa, chain + ## HITS:1 COG:ECs2661 KEGG:ns NR:ns ## COG: ECs2661 COG1191 # Protein_GI_number: 15831915 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 416 100.0 1e-116 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL >gi|223713588|gb|ACDM01000010.1| GENE 92 105266 - 105814 255 182 aa, chain + ## HITS:1 COG:no KEGG:APECO1_962 NR:ns ## KEGG: APECO1_962 # Name: fliZ # Def: flagella biosynthesis protein FliZ # Organism: E.coli_APEC # Pathway: not_defined # 1 182 14 195 195 361 97.0 5e-99 MVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGW QVEQQSWAALCRFCGDLHCKTQSNFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHL HEQNISLAQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTGLVQKSSSQPASD IY >gi|223713588|gb|ACDM01000010.1| GENE 93 105902 - 106702 1298 266 aa, chain + ## HITS:1 COG:fliY KEGG:ns NR:ns ## COG: fliY COG0834 # Protein_GI_number: 16129867 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1 266 1 266 266 490 100.0 1e-138 MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGDD GKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDF STPYTISGIQALVKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDP TKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVN DAIAEMQKDGTLQALSEKWFGADVTK >gi|223713588|gb|ACDM01000010.1| GENE 94 106807 - 107793 1195 328 aa, chain + ## HITS:1 COG:yedO KEGG:ns NR:ns ## COG: yedO COG2515 # Protein_GI_number: 16129866 # Func_class: E Amino acid transport and metabolism # Function: 1-aminocyclopropane-1-carboxylate deaminase # Organism: Escherichia coli K12 # 1 328 33 360 360 647 99.0 0 MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAA DALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLD LFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGGSNALGALGYVESALEIAQQC EGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGVTVSRSVADQLPKVVNLQQAIAK ELELTASAEIILWDDYFAPGYGVPNDEGMEAVKLLARLEGILLDPVYTGKAMAGLIDGIS QKRFKDEGPILFIHTGGAPALFAYHPHV >gi|223713588|gb|ACDM01000010.1| GENE 95 107808 - 108476 721 222 aa, chain + ## HITS:1 COG:yecS KEGG:ns NR:ns ## COG: yecS COG0765 # Protein_GI_number: 16129865 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 222 1 222 222 396 100.0 1e-110 MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYIS IFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWE AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS RTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK >gi|223713588|gb|ACDM01000010.1| GENE 96 108473 - 109225 660 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 246 2 241 245 258 51 2e-67 MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTI TVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE ATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGAAKALFADPQQPRT RQFLEKFLLQ >gi|223713588|gb|ACDM01000010.1| GENE 97 109491 - 110177 430 228 aa, chain + ## HITS:1 COG:ECs2654 KEGG:ns NR:ns ## COG: ECs2654 COG2771 # Protein_GI_number: 15831908 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 228 13 240 240 450 99.0 1e-126 MLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQ AKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGF LSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTA EGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI >gi|223713588|gb|ACDM01000010.1| GENE 98 110245 - 110469 382 74 aa, chain - ## HITS:1 COG:no KEGG:ECDH10B_2056 NR:ns ## KEGG: ECDH10B_2056 # Name: yecF # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 74 1 74 74 103 100.0 1e-21 MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAV FSKTVKQIKQAYRQ >gi|223713588|gb|ACDM01000010.1| GENE 99 110928 - 111584 539 218 aa, chain + ## HITS:1 COG:uvrY KEGG:ns NR:ns ## COG: uvrY COG2197 # Protein_GI_number: 16129861 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli K12 # 1 218 1 218 218 416 100.0 1e-116 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT VNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ >gi|223713588|gb|ACDM01000010.1| GENE 100 111647 - 113413 1642 588 aa, chain + ## HITS:1 COG:ECs2651 KEGG:ns NR:ns ## COG: ECs2651 COG0322 # Protein_GI_number: 15831905 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Escherichia coli O157:H7 # 1 588 1 588 588 1193 100.0 0 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH NYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETL ALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGK DDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAG MACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFN LSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTA LASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAM NQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADR KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIE GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH >gi|223713588|gb|ACDM01000010.1| GENE 101 113470 - 114018 264 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 9 175 486 665 904 106 38 1e-21 MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQST RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS VAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLL DQ >gi|223713588|gb|ACDM01000010.1| GENE 102 114668 - 115333 756 221 aa, chain + ## HITS:1 COG:yecA KEGG:ns NR:ns ## COG: yecA COG3318 # Protein_GI_number: 16129858 # Func_class: R General function prediction only # Function: Predicted metal-binding protein related to the C-terminal domain of SecA # Organism: Escherichia coli K12 # 1 221 1 221 221 437 100.0 1e-122 MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPEQWLVAVWGGA DYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFG YMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAALDLHA YWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCCLH >gi|223713588|gb|ACDM01000010.1| GENE 103 115395 - 116573 1198 392 aa, chain - ## HITS:1 COG:ECs2615 KEGG:ns NR:ns ## COG: ECs2615 COG0814 # Protein_GI_number: 15831869 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 392 12 403 403 643 99.0 0 MAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLA KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATAGVLLFTFVA GGVVCVGTSLVDLFNRFLFSAKIIFLVVMLVLLLPHIHKVNLLTLPLQQGLALSAIPVIF TSFGFHGSVPSIVSYMDGNVRKLRWVFITGSAIPLVAYIFWQVATLGSIDSTTFMGLLAN HAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRSNTVGGR LQTGAITFLPPLAFALFYPRGFVMALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVK GGRPALVVVFLCGIAVIGVQFLIAAGLLPEVG >gi|223713588|gb|ACDM01000010.1| GENE 104 116797 - 117036 321 79 aa, chain + ## HITS:1 COG:no KEGG:SSON_1212 NR:ns ## KEGG: SSON_1212 # Name: yecH # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 79 1 79 79 144 100.0 1e-33 MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSAEGMTAGELVAFLAAKG KFIPSKDGFSTDQSKICRH >gi|223713588|gb|ACDM01000010.1| GENE 105 117074 - 117571 667 165 aa, chain - ## HITS:1 COG:ECs2613 KEGG:ns NR:ns ## COG: ECs2613 COG1528 # Protein_GI_number: 15831867 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Escherichia coli O157:H7 # 1 165 1 165 165 291 100.0 3e-79 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDY LTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFL QWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELSTLDTQN >gi|223713588|gb|ACDM01000010.1| GENE 106 118529 - 118780 284 83 aa, chain + ## HITS:1 COG:no KEGG:B21_01860 NR:ns ## KEGG: B21_01860 # Name: yecJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 83 1 83 83 138 100.0 5e-32 MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQLKNIDFTNHPAAADPV TMRAIQKAIALIELKFTPQGESH >gi|223713588|gb|ACDM01000010.1| GENE 107 118859 - 119362 483 167 aa, chain - ## HITS:1 COG:ECs2610 KEGG:ns NR:ns ## COG: ECs2610 COG1528 # Protein_GI_number: 15831864 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 296 100.0 1e-80 MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNF MKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFL RDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH >gi|223713588|gb|ACDM01000010.1| GENE 108 120159 - 121148 1233 329 aa, chain + ## HITS:1 COG:araF KEGG:ns NR:ns ## COG: araF COG1879 # Protein_GI_number: 16129851 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 329 1 329 329 634 100.0 0 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP PKFTEVTDVVLITRDNFKEELEKKGLGGK >gi|223713588|gb|ACDM01000010.1| GENE 109 121218 - 122732 183 504 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 275 477 20 217 245 75 25 3e-12 MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPT TGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLL NYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREID NLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAM VGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELMK GLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISAR RKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKV ILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEIAGE LLHEQADERQALSLAMPKVSQAVA >gi|223713588|gb|ACDM01000010.1| GENE 110 122747 - 123733 1141 328 aa, chain + ## HITS:1 COG:araH KEGG:ns NR:ns ## COG: araH COG1172 # Protein_GI_number: 16132221 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1 328 2 329 329 519 99.0 1e-147 MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISM SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVN GFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLT VACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILA SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISP FAQYVVRGLILLAAVIFDRYKQKAKRTV >gi|223713588|gb|ACDM01000010.1| GENE 111 123900 - 124700 698 266 aa, chain + ## HITS:1 COG:otsB KEGG:ns NR:ns ## COG: otsB COG1877 # Protein_GI_number: 16129849 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphatase # Organism: Escherichia coli K12 # 1 266 1 266 266 528 99.0 1e-150 MTEPLTEAPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATASDGALALIS GRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTVIAQYPGA ELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQQGKCVVEIKPRGTSKGEAIA AFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVKIGTGATQASWRLAGVPDVWSWL EMITTALQQKRENNRSDDYESFSRSI >gi|223713588|gb|ACDM01000010.1| GENE 112 124675 - 126099 1260 474 aa, chain + ## HITS:1 COG:otsA KEGG:ns NR:ns ## COG: otsA COG0380 # Protein_GI_number: 16129848 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphate synthase # Organism: Escherichia coli K12 # 1 474 1 474 474 959 100.0 0 MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGN ITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPL LQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDY DLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGP LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS RGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMS LAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQRDKVATFPKLA >gi|223713588|gb|ACDM01000010.1| GENE 113 126106 - 126534 396 142 aa, chain - ## HITS:1 COG:ECs2603 KEGG:ns NR:ns ## COG: ECs2603 COG0589 # Protein_GI_number: 15831857 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 142 1 142 142 270 98.0 7e-73 MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPEMYNQLAAPMLEDLRSV MQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHHFDLVICGNHNHSFFSRAS CSAKRVIASSEVDVLLVPLTGD >gi|223713588|gb|ACDM01000010.1| GENE 114 127314 - 127664 272 116 aa, chain + ## HITS:1 COG:no KEGG:EC55989_2071 NR:ns ## KEGG: EC55989_2071 # Name: flhD # Def: transcriptional activator FlhD # Organism: E.coli_55989 # Pathway: Two-component system [PATH:eck02020]; Flagellar assembly [PATH:eck02040] # 1 116 4 119 119 196 100.0 3e-49 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA >gi|223713588|gb|ACDM01000010.1| GENE 115 127667 - 128245 412 192 aa, chain + ## HITS:1 COG:no KEGG:ECSP_2465 NR:ns ## KEGG: ECSP_2465 # Name: flhC # Def: transcriptional activator FlhC # Organism: E.coli_O157_TW14359 # Pathway: Two-component system [PATH:etw02020]; Flagellar assembly [PATH:etw02040] # 1 192 1 192 192 385 100.0 1e-106 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII PQLLDEQRVQAV >gi|223713588|gb|ACDM01000010.1| GENE 116 128372 - 129259 1021 295 aa, chain + ## HITS:1 COG:ECs2600 KEGG:ns NR:ns ## COG: ECs2600 COG1291 # Protein_GI_number: 15831854 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Escherichia coli O157:H7 # 1 295 1 295 295 546 99.0 1e-155 MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKA LPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADS VMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAA VMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLASVLRQKSAETSKMMQC VKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVKNPQQQTTTEEA >gi|223713588|gb|ACDM01000010.1| GENE 117 129256 - 130182 653 308 aa, chain + ## HITS:1 COG:ECs2599 KEGG:ns NR:ns ## COG: ECs2599 COG1360 # Protein_GI_number: 15831853 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Escherichia coli O157:H7 # 1 308 1 308 308 586 99.0 1e-167 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLWKLRG DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG MAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVP TMPSAEPR >gi|223713588|gb|ACDM01000010.1| GENE 118 130193 - 132151 1642 652 aa, chain + ## HITS:1 COG:cheA KEGG:ns NR:ns ## COG: cheA COG0643 # Protein_GI_number: 16129840 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Escherichia coli K12 # 1 652 3 654 654 1196 99.0 0 MDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFSVL QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYICQA LRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPRRIILSRLKAGEVDLLEEELGHL TTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAA EQAPTGRVEREKTTRSSESTSIRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNHGD LITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLVGSSTEL DKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDG AGLNRERILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNI QEMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADL HPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQ HQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSALQAINREQRMANTAA >gi|223713588|gb|ACDM01000010.1| GENE 119 132172 - 132675 594 167 aa, chain + ## HITS:1 COG:ECs2597 KEGG:ns NR:ns ## COG: ECs2597 COG0835 # Protein_GI_number: 15831851 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 293 100.0 1e-79 MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTN LRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAP EFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA >gi|223713588|gb|ACDM01000010.1| GENE 120 132820 - 134481 1461 553 aa, chain + ## HITS:1 COG:tar KEGG:ns NR:ns ## COG: tar COG0840 # Protein_GI_number: 16129838 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1 553 1 553 553 897 100.0 0 MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLM LQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAATHYKKFKSMAPLPEMVATS RNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGEAFAQYALSSEKLYRDIV TDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLT IDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASAL EETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIA DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIE DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDR VTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPLTNKPQTPSRPASEQPPAQPR LRIAEQDPNWETF >gi|223713588|gb|ACDM01000010.1| GENE 121 134527 - 136128 1539 533 aa, chain + ## HITS:1 COG:tap KEGG:ns NR:ns ## COG: tap COG0840 # Protein_GI_number: 16129837 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1 533 1 533 533 839 100.0 0 MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVEQSNQQRAALAQTRAVM LQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRGLQKE TEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQ SQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVY GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ TAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDI ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEES VNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGIEQVAQAVSQMDQVT QQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESVQLQIAPVVS >gi|223713588|gb|ACDM01000010.1| GENE 122 136147 - 137007 613 286 aa, chain + ## HITS:1 COG:cheR KEGG:ns NR:ns ## COG: cheR COG1352 # Protein_GI_number: 16129836 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Escherichia coli K12 # 1 286 1 286 286 572 100.0 1e-163 MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYRVW SAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQ LQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTT QQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD >gi|223713588|gb|ACDM01000010.1| GENE 123 137010 - 138059 892 349 aa, chain + ## HITS:1 COG:cheB KEGG:ns NR:ns ## COG: cheB COG2201 # Protein_GI_number: 16129835 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Escherichia coli K12 # 1 349 1 349 349 657 99.0 0 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMP RMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYN EMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLPL SSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHMELARSG ANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAMRQAGAW TLAQNEASCVVFGMPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI >gi|223713588|gb|ACDM01000010.1| GENE 124 138074 - 138463 499 129 aa, chain + ## HITS:1 COG:ECs2592 KEGG:ns NR:ns ## COG: ECs2592 COG0784 # Protein_GI_number: 15831846 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Escherichia coli O157:H7 # 1 129 1 129 129 234 100.0 4e-62 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM PNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL NKIFEKLGM >gi|223713588|gb|ACDM01000010.1| GENE 125 138474 - 139118 802 214 aa, chain + ## HITS:1 COG:cheZ KEGG:ns NR:ns ## COG: cheZ COG3143 # Protein_GI_number: 16129833 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein # Organism: Escherichia coli K12 # 1 214 1 214 214 345 100.0 3e-95 MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQ MTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLAD VPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKR ENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF >gi|223713588|gb|ACDM01000010.1| GENE 126 139320 - 140468 1064 382 aa, chain + ## HITS:1 COG:flhB KEGG:ns NR:ns ## COG: flhB COG1377 # Protein_GI_number: 16129832 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli K12 # 1 382 1 382 382 693 99.0 0 MSDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGML SAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL QPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRP VQPTHLPVPEALDFINEKPTHE >gi|223713588|gb|ACDM01000010.1| GENE 127 140461 - 142539 2089 692 aa, chain + ## HITS:1 COG:flhA KEGG:ns NR:ns ## COG: flhA COG1298 # Protein_GI_number: 16129831 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli K12 # 1 692 1 692 692 1265 99.0 0 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRI LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYT VVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKV LQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPSKDEVHVI GLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK >gi|223713588|gb|ACDM01000010.1| GENE 128 142539 - 142931 142 130 aa, chain + ## HITS:1 COG:no KEGG:B21_01838 NR:ns ## KEGG: B21_01838 # Name: flhE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 130 1 130 130 218 100.0 4e-56 MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLSTRQPASGLMTLVAWRY QLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPLRFIWEVPGGGRLIPPLKV QRNEVIVNYR >gi|223713588|gb|ACDM01000010.1| GENE 129 143051 - 143539 212 162 aa, chain - ## HITS:1 COG:yecT KEGG:ns NR:ns ## COG: yecT COG3755 # Protein_GI_number: 16129829 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 162 8 169 169 311 99.0 4e-85 MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDTDVNVIKSCLRQEYNLV DAQLNKAYGEAYRYIEQVPRTGVKKPDTEQLNLLKKSQRAWLDFRDKECELILSNEDVQD LSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLTRG >gi|223713588|gb|ACDM01000010.1| GENE 130 143716 - 145449 2224 577 aa, chain - ## HITS:1 COG:argS KEGG:ns NR:ns ## COG: argS COG0018 # Protein_GI_number: 16129828 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 577 1 577 577 1151 100.0 0 MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAE QVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASDRLGVATPEKQTIVVDYS APNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQEN AGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQ ITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPM GVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYVPE SVPLEHHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDMPADELEKL ANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQ LAAAPVIIREDREAQLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYEHCPIL SAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM >gi|223713588|gb|ACDM01000010.1| GENE 131 145665 - 146231 402 188 aa, chain + ## HITS:1 COG:yecM KEGG:ns NR:ns ## COG: yecM COG3102 # Protein_GI_number: 16129827 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 188 3 190 190 373 100.0 1e-104 MANWQSIDELQDIASDLPRFIHALDELSRRLGLNITPLTADHISLRCHQNATAERWRRGF EQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPGEKRYPHEGWEHIEIVLPG DPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNPTLAVTDGKTTIKFHPWSIEE IVASEQSA >gi|223713588|gb|ACDM01000010.1| GENE 132 146245 - 146991 393 248 aa, chain + ## HITS:1 COG:cutCm KEGG:ns NR:ns ## COG: cutCm COG3142 # Protein_GI_number: 16132223 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Escherichia coli K12 # 1 248 1 248 248 495 99.0 1e-140 MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP RGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF HRAFDMCANPLHTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVR AENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSSDEHADEYSRYIVDGAAVAEMKG IIERHQAK >gi|223713588|gb|ACDM01000010.1| GENE 133 147379 - 148479 643 366 aa, chain + ## HITS:1 COG:ECs2583 KEGG:ns NR:ns ## COG: ECs2583 COG3005 # Protein_GI_number: 15831837 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 1 366 1 366 366 721 98.0 0 MRGKKRIGLLFLLIAVVVGGGGLLLAQKALHKTSDTAFCLSCHSMSKPFEEYQGTVHFSN QKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDSDDKFEAHRQEMAETVWKE LKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKDSETCIDCHKGIAHFPPEIKMDDN AAHELESQAATSVTNGAHIYPFKTSHIGELATVNPGTDLTVVDASGKQPIVLLQGYQMQG SENTLYLAAGQRLALATLSEEGIKALTVNGEWQADEYGNQWRQASLQGALTDPALADRKP LWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIAKGMGARTSMSENELDILTRYFQYNAK DITEKQ >gi|223713588|gb|ACDM01000010.1| GENE 134 148504 - 149301 927 265 aa, chain + ## HITS:1 COG:bisZ KEGG:ns NR:ns ## COG: bisZ COG0243 # Protein_GI_number: 16129825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 265 7 271 815 529 100.0 1e-150 MTLTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRWGAMNVEVKDGKIVSST GALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALK LIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAA QVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLK KSGKPVIAIDPIRSETIEFFDDNAT >gi|223713588|gb|ACDM01000010.1| GENE 135 149314 - 150933 1702 539 aa, chain + ## HITS:1 COG:bisZ KEGG:ns NR:ns ## COG: bisZ COG0243 # Protein_GI_number: 16129825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 539 277 815 815 1104 99.0 0 MGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWAAEITGV PEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYH YSNGGNPTRVGGVLPEMSAAIAGHASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQ TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFE RNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWL KFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYGDFRADPVKNALGTP SGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLHSQLNYAEL RKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKGVVCVHEGA WPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPKLTAFDQPAVQA >gi|223713588|gb|ACDM01000010.1| GENE 136 151098 - 152069 1059 323 aa, chain - ## HITS:1 COG:yecP KEGG:ns NR:ns ## COG: yecP COG0500 # Protein_GI_number: 16129824 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 323 1 323 323 671 100.0 0 MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSNAVEFLPEIKPYRLDLL HSVTAESEEPLSAGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSD LTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLG IEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPG DRYAQMRNVYFIPSALALKNWLKKCGFVDIRIADVSVTTTEEQRRTEWMVTESLADFLDP HDPGKTVEGYPAPKRAVLIARKP >gi|223713588|gb|ACDM01000010.1| GENE 137 152066 - 152809 772 247 aa, chain - ## HITS:1 COG:yecO KEGG:ns NR:ns ## COG: yecO COG0500 # Protein_GI_number: 16129823 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 247 1 247 247 513 100.0 1e-146 MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQV YDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD IAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNM HHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHNAGFEHSELWFQCFNFGSLVA LKAEDAA >gi|223713588|gb|ACDM01000010.1| GENE 138 152850 - 153245 490 131 aa, chain - ## HITS:1 COG:ECs2579 KEGG:ns NR:ns ## COG: ECs2579 COG3788 # Protein_GI_number: 15831833 # Func_class: R General function prediction only # Function: Uncharacterized relative of glutathione S-transferase, MAPEG superfamily # Organism: Escherichia coli O157:H7 # 1 131 11 141 141 228 100.0 2e-60 MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVL MLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLW YMPWELVFSLR >gi|223713588|gb|ACDM01000010.1| GENE 139 153298 - 154116 481 272 aa, chain - ## HITS:1 COG:yecE KEGG:ns NR:ns ## COG: yecE COG1801 # Protein_GI_number: 16129821 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 272 1 272 272 542 100.0 1e-154 MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRF CFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDS LPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQR KKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQ APELVHTLWEDLRKTLPEIGAVPAIPQQSSLF >gi|223713588|gb|ACDM01000010.1| GENE 140 154113 - 154679 539 188 aa, chain - ## HITS:1 COG:ECs2577 KEGG:ns NR:ns ## COG: ECs2577 COG1335 # Protein_GI_number: 15831831 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli O157:H7 # 1 188 12 199 199 376 100.0 1e-104 MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSA DYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRG IDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRS VEEILNAL >gi|223713588|gb|ACDM01000010.1| GENE 141 154989 - 156761 2203 590 aa, chain + ## HITS:1 COG:aspS KEGG:ns NR:ns ## COG: aspS COG0173 # Protein_GI_number: 16129819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 590 1 590 590 1199 100.0 0 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLK SVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLT DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN >gi|223713588|gb|ACDM01000010.1| GENE 142 156822 - 157331 324 169 aa, chain + ## HITS:1 COG:ECs2575 KEGG:ns NR:ns ## COG: ECs2575 COG0494 # Protein_GI_number: 15831829 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 20 169 1 150 150 292 99.0 2e-79 MSIDNYVNGMSEGSQRRGSVKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTG SVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTES WFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA >gi|223713588|gb|ACDM01000010.1| GENE 143 157360 - 158100 1067 246 aa, chain + ## HITS:1 COG:ECs2574 KEGG:ns NR:ns ## COG: ECs2574 COG0217 # Protein_GI_number: 15831828 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 444 99.0 1e-125 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN MTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC GGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMG KVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISD EVAATL >gi|223713588|gb|ACDM01000010.1| GENE 144 158135 - 158656 581 173 aa, chain + ## HITS:1 COG:ECs2573 KEGG:ns NR:ns ## COG: ECs2573 COG0817 # Protein_GI_number: 15831827 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Escherichia coli O157:H7 # 1 173 1 173 173 302 100.0 2e-82 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR >gi|223713588|gb|ACDM01000010.1| GENE 145 158658 - 159260 231 200 aa, chain - ## HITS:1 COG:no KEGG:JW5306 NR:ns ## KEGG: JW5306 # Name: yebB # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 200 1 200 200 419 100.0 1e-116 MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLST ITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSK FVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPG LVLIHAEGVETPQPELTEAV >gi|223713588|gb|ACDM01000010.1| GENE 146 159535 - 160146 632 203 aa, chain + ## HITS:1 COG:ECs2571 KEGG:ns NR:ns ## COG: ECs2571 COG0632 # Protein_GI_number: 15831825 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Escherichia coli O157:H7 # 1 203 1 203 203 379 100.0 1e-105 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM VSKIARPDASSETLIREALRAAL >gi|223713588|gb|ACDM01000010.1| GENE 147 160155 - 161165 1079 336 aa, chain + ## HITS:1 COG:ECs2570 KEGG:ns NR:ns ## COG: ECs2570 COG2255 # Protein_GI_number: 15831824 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Escherichia coli O157:H7 # 1 336 1 336 336 644 100.0 0 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP >gi|223713588|gb|ACDM01000010.1| GENE 148 161312 - 162097 972 261 aa, chain - ## HITS:1 COG:znuB KEGG:ns NR:ns ## COG: znuB COG1108 # Protein_GI_number: 16129812 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Escherichia coli K12 # 1 261 1 261 261 395 100.0 1e-110 MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAV IAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLL AVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTI GVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAVYDTPAG PSVVLCAALLFILSMMKKQAS >gi|223713588|gb|ACDM01000010.1| GENE 149 162094 - 162849 219 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 202 1 212 305 89 29 2e-16 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGV IKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQK LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHD LHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQG RIVLRRGNDRS >gi|223713588|gb|ACDM01000010.1| GENE 150 162874 - 163860 408 328 aa, chain + ## HITS:1 COG:ECs2567 KEGG:ns NR:ns ## COG: ECs2567 COG4531 # Protein_GI_number: 15831821 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Zn2+ transport system, periplasmic component/surface adhesin # Organism: Escherichia coli O157:H7 # 1 328 1 328 328 635 98.0 0 MKCYNITLLIFITIIGRIMLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAI ADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQV TIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKL VELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPL GHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLG TNIKLGKTSYSEFLSQLANQYASCLKGD >gi|223713588|gb|ACDM01000010.1| GENE 151 163939 - 165198 1358 419 aa, chain + ## HITS:1 COG:ECs2566 KEGG:ns NR:ns ## COG: ECs2566 COG0739 # Protein_GI_number: 15831820 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli O157:H7 # 1 419 1 419 419 823 100.0 0 MLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIP QDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSW TLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASAR NAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKD YYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAM PQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIA LSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD >gi|223713588|gb|ACDM01000010.1| GENE 152 165318 - 166289 746 323 aa, chain + ## HITS:1 COG:msbB KEGG:ns NR:ns ## COG: msbB COG1560 # Protein_GI_number: 16129808 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli K12 # 1 323 1 323 323 654 100.0 0 METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFRDPILARLGRFAGRLGK SSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAELAIRGPEKIQPRVDWQGL EIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRF GGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVC RARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHTIARRMNEEVEIFVGPRPEQYTWIL KLLKTRKPGEIQPYKRKDLYPIK >gi|223713588|gb|ACDM01000010.1| GENE 153 166420 - 167862 1458 480 aa, chain - ## HITS:1 COG:pykA KEGG:ns NR:ns ## COG: pykA COG0469 # Protein_GI_number: 16129807 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Escherichia coli K12 # 1 480 1 480 480 884 100.0 0 MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAK LGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPAD VVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKA DIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAE VMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDN VEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALY RGVTPVHFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE >gi|223713588|gb|ACDM01000010.1| GENE 154 167990 - 168859 672 289 aa, chain - ## HITS:1 COG:yebK KEGG:ns NR:ns ## COG: yebK COG1737 # Protein_GI_number: 16129806 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 289 1 289 289 538 100.0 1e-153 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDT RGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINR AVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVV LISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSR LAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR >gi|223713588|gb|ACDM01000010.1| GENE 155 169197 - 170672 1733 491 aa, chain + ## HITS:1 COG:zwf KEGG:ns NR:ns ## COG: zwf COG0364 # Protein_GI_number: 16129805 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Escherichia coli K12 # 1 491 1 491 491 1012 100.0 0 MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTK VVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFSRLGAMLDQKNRITINYFAMP PSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQVYRIDHYLG KETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKAGQMRDMIQNHL LQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPG YLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLF KESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADA YERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMI TRDGRSWNEFE >gi|223713588|gb|ACDM01000010.1| GENE 156 170907 - 172718 1687 603 aa, chain + ## HITS:1 COG:ECs2561 KEGG:ns NR:ns ## COG: ECs2561 COG0129 # Protein_GI_number: 15831815 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli O157:H7 # 1 603 1 603 603 1207 100.0 0 MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASL KSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQD GMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGP MASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQ LPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGS TNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVREL LKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGT KVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPK ANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRD GDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATC ITF >gi|223713588|gb|ACDM01000010.1| GENE 157 172755 - 173396 984 213 aa, chain + ## HITS:1 COG:STM1884 KEGG:ns NR:ns ## COG: STM1884 COG0800 # Protein_GI_number: 16765226 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Salmonella typhimurium LT2 # 1 212 1 212 213 373 97.0 1e-103 MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAI AKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSE LMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLC IGGSWLVPADALEAGDYDRITKLAREAVEGAKL >gi|223713588|gb|ACDM01000010.1| GENE 158 173452 - 174630 1267 392 aa, chain - ## HITS:1 COG:purT KEGG:ns NR:ns ## COG: purT COG0027 # Protein_GI_number: 16129802 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Escherichia coli K12 # 1 392 1 392 392 759 100.0 0 MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVIN MLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRL AAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKY AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMS PLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIFSEVSPRPHDTGMVTLISQDLSEF ALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQNVTFDNVQNAVGADLQIRLFGKPEIDG SRRLGVALATAESVVDAIERAKHAAGQVKVQG >gi|223713588|gb|ACDM01000010.1| GENE 159 174764 - 175054 389 96 aa, chain + ## HITS:1 COG:ECs2558 KEGG:ns NR:ns ## COG: ECs2558 COG3141 # Protein_GI_number: 15831812 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 96 1 96 96 148 100.0 2e-36 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA >gi|223713588|gb|ACDM01000010.1| GENE 160 175121 - 175477 205 118 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_1203 NR:ns ## KEGG: ECIAI39_1203 # Name: yebF # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 118 5 122 122 222 100.0 4e-57 MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIAASVKRDYQQNRVARWA DDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHYQVSVDCKAGMAEYQRR >gi|223713588|gb|ACDM01000010.1| GENE 161 175391 - 175597 90 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|188494878|ref|ZP_03002148.1| ## NR: gi|188494878|ref|ZP_03002148.1| hypothetical protein Ec53638_0054 [Escherichia coli 53638] # 1 68 1 68 68 130 98.0 2e-29 MLIARCDAVASSQAYDCGAFWGGQGTRAASANSQSNYQKPLTPLIFRHSRFAVHADLVMN IGTFTTHG >gi|223713588|gb|ACDM01000010.1| GENE 162 175804 - 176463 777 219 aa, chain + ## HITS:1 COG:yebE KEGG:ns NR:ns ## COG: yebE COG2979 # Protein_GI_number: 16129799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 219 1 219 219 352 100.0 2e-97 MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLVANKSARKLLTKYGTNA LLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHID AKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDI DHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE >gi|223713588|gb|ACDM01000010.1| GENE 163 176672 - 178732 1873 686 aa, chain + ## HITS:1 COG:ptrB KEGG:ns NR:ns ## COG: ptrB COG1770 # Protein_GI_number: 16129798 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Escherichia coli K12 # 1 686 1 686 686 1409 100.0 0 MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDR ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKR AAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWA NDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIH LASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRM RDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY VTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLW IVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIV HVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGV AINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDN VTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFK SYEGVAMEYAFLVALAQGTLPATPAD >gi|223713588|gb|ACDM01000010.1| GENE 164 178729 - 179391 783 220 aa, chain - ## HITS:1 COG:exoX KEGG:ns NR:ns ## COG: exoX COG0847 # Protein_GI_number: 16129797 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1 220 1 220 220 459 100.0 1e-129 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT >gi|223713588|gb|ACDM01000010.1| GENE 165 179415 - 180071 448 218 aa, chain - ## HITS:1 COG:yobB KEGG:ns NR:ns ## COG: yobB COG0388 # Protein_GI_number: 16129796 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli K12 # 1 218 1 218 218 444 100.0 1e-125 MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRR SRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN SALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR >gi|223713588|gb|ACDM01000010.1| GENE 166 180173 - 180403 338 76 aa, chain - ## HITS:1 COG:no KEGG:ECP_1786 NR:ns ## KEGG: ECP_1786 # Name: not_defined # Def: DNA polymerase III subunit theta (EC:2.7.7.7) # Organism: E.coli_536 # Pathway: Purine metabolism [PATH:ecp00230]; Pyrimidine metabolism [PATH:ecp00240]; Metabolic pathways [PATH:ecp01100]; DNA replication [PATH:ecp03030]; Mismatch repair [PATH:ecp03430]; Homologous recombination [PATH:ecp03440] # 1 76 30 105 105 136 100.0 2e-31 MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLIAHR LASVNLSRLPYEPKLK >gi|223713588|gb|ACDM01000010.1| GENE 167 180542 - 180916 371 124 aa, chain + ## HITS:1 COG:yobA KEGG:ns NR:ns ## COG: yobA COG2372 # Protein_GI_number: 16129794 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Escherichia coli K12 # 1 124 1 124 124 224 100.0 4e-59 MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGF SGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYT FSVK >gi|223713588|gb|ACDM01000010.1| GENE 168 180920 - 181792 712 290 aa, chain + ## HITS:1 COG:yebZ KEGG:ns NR:ns ## COG: yebZ COG1276 # Protein_GI_number: 16129793 # Func_class: P Inorganic ion transport and metabolism # Function: Putative copper export protein # Organism: Escherichia coli K12 # 1 290 1 290 290 476 100.0 1e-134 MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATA MLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLF MLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWR HQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVI ALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF >gi|223713588|gb|ACDM01000010.1| GENE 169 181805 - 182146 373 113 aa, chain + ## HITS:1 COG:no KEGG:SSON_1309 NR:ns ## KEGG: SSON_1309 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 113 1 113 113 195 100.0 4e-49 MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPS TLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC >gi|223713588|gb|ACDM01000010.1| GENE 170 182542 - 183198 516 218 aa, chain + ## HITS:1 COG:pphA KEGG:ns NR:ns ## COG: pphA COG0639 # Protein_GI_number: 16129791 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1 218 2 219 219 429 100.0 1e-120 MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQ SLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGDWFIALADNQQKQAKTALE KCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSRLGERQKGQGITGA DHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ >gi|223713588|gb|ACDM01000010.1| GENE 171 183199 - 183474 183 91 aa, chain - ## HITS:1 COG:no KEGG:SbBS512_E2105 NR:ns ## KEGG: SbBS512_E2105 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1 91 1 91 91 191 100.0 8e-48 MAGYLSWLFPRCKISPKLNGTAPHFGDEMFALVLFVCYLDGGCEDIVVDVYNTEQQCLYS MSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF >gi|223713588|gb|ACDM01000010.1| GENE 172 183495 - 183731 223 78 aa, chain - ## HITS:1 COG:no KEGG:ECSP_2410 NR:ns ## KEGG: ECSP_2410 # Name: yebV # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 78 1 78 78 157 100.0 2e-37 MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSV LYRTRYDQQSDAWIMRLA >gi|223713588|gb|ACDM01000010.1| GENE 173 183849 - 185288 1208 479 aa, chain - ## HITS:1 COG:yebU_1 KEGG:ns NR:ns ## COG: yebU_1 COG0144 # Protein_GI_number: 16129788 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Escherichia coli K12 # 1 383 3 385 385 791 99.0 0 MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPY GWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR VMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGG TLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDC EGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGVGLNWDENLRLWQR DKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNMNAFELTPQE AEEWYRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLFTGNA >gi|223713588|gb|ACDM01000010.1| GENE 174 185368 - 188001 2564 877 aa, chain - ## HITS:1 COG:yebT KEGG:ns NR:ns ## COG: yebT COG3008 # Protein_GI_number: 16129787 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Escherichia coli K12 # 1 877 3 879 879 1728 100.0 0 MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQDRGNTVTIDFMSADGIV PGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGV SGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVY FRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKL ESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPL MYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLT GKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDAGQPLILHGVQVGQ VIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWINGG IRILPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEV GEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALK GAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDI GQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYIN VEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMT LGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAF ATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK >gi|223713588|gb|ACDM01000010.1| GENE 175 187970 - 189148 783 392 aa, chain - ## HITS:1 COG:ECs2543 KEGG:ns NR:ns ## COG: ECs2543 COG2995 # Protein_GI_number: 15831797 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli O157:H7 # 1 392 36 427 427 771 100.0 0 MLFSLPEINSHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLG IRIDANVMQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWFGNRLGMNLRPVLLM LERLKEWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWE RFYPQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIV LLLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFTL LLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYF GAAVILTILAVEWLDSRLLWDAHESGNARFDD >gi|223713588|gb|ACDM01000010.1| GENE 176 189383 - 189880 302 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 3 159 6 161 165 120 41 5e-26 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG >gi|223713588|gb|ACDM01000010.1| GENE 177 189977 - 190675 542 232 aa, chain + ## HITS:1 COG:proQm KEGG:ns NR:ns ## COG: proQm COG3109 # Protein_GI_number: 16132234 # Func_class: T Signal transduction mechanisms # Function: Activator of osmoprotectant transporter ProP # Organism: Escherichia coli K12 # 1 232 1 232 232 387 100.0 1e-108 MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSA LRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAK KREAAATAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPV SDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF >gi|223713588|gb|ACDM01000010.1| GENE 178 190695 - 192743 2120 682 aa, chain + ## HITS:1 COG:prc KEGG:ns NR:ns ## COG: prc COG0793 # Protein_GI_number: 16129784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Escherichia coli K12 # 1 682 1 682 682 1321 100.0 0 MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQF DLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDELRSGKLDVFYDLYNLAQ KRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAELNALWDSKVKFDELSLKLT GKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTE MSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRL DDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRERIRLEDRAVKMSVKTVGKEKVGVL DIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVR DNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTV QQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETG EKFEDNALPWDSIDAATYVKSGDLTAFEPELLKEHNARIAKDPEFQNIMKDIARFNAMKD KRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETV NIALDLAKLEKARPAEQPAPVK >gi|223713588|gb|ACDM01000010.1| GENE 179 192938 - 193816 864 292 aa, chain + ## HITS:1 COG:htpX KEGG:ns NR:ns ## COG: htpX COG0501 # Protein_GI_number: 16129783 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli K12 # 1 292 2 293 293 546 100.0 1e-155 MRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGFGGSFVSLLMSKWMALRS VGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVS TGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRILAQLAAGFMGGN RDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAA LQRLKTSYEPQEATSMMALCINGKSKSLSELFMTHPPLDKRIEALRTGEYLK >gi|223713588|gb|ACDM01000010.1| GENE 180 193862 - 195235 974 457 aa, chain - ## HITS:1 COG:yebQ KEGG:ns NR:ns ## COG: yebQ COG0477 # Protein_GI_number: 16129782 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 457 38 494 494 753 100.0 0 MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAY QIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAA LMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLG IIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVV MVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLG RSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPAD INIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGAALVALML NQFGDNGTHVSLMAAAILAVIAACVSGLRITQPRSRA >gi|223713588|gb|ACDM01000010.1| GENE 181 195412 - 196203 935 263 aa, chain + ## HITS:1 COG:kdgR KEGG:ns NR:ns ## COG: kdgR COG1414 # Protein_GI_number: 16129781 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 263 1 263 263 494 100.0 1e-140 MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGY VAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVY IHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITST EALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQE YVAMLHTAARKISAQMGYHDYPF >gi|223713588|gb|ACDM01000010.1| GENE 182 196347 - 196586 256 79 aa, chain - ## HITS:1 COG:no KEGG:ECO103_2017 NR:ns ## KEGG: ECO103_2017 # Name: yobH # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 79 1 79 79 141 100.0 8e-33 MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGF LGITDCPLLRKSNIVVDNG >gi|223713588|gb|ACDM01000010.1| GENE 183 196963 - 197250 254 95 aa, chain + ## HITS:1 COG:no KEGG:ECS88_1877 NR:ns ## KEGG: ECS88_1877 # Name: yebO # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 95 1 95 95 134 100.0 1e-30 MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIELLEALLDQQKRQNALL RRLCEANEPEKADKKTVESQKSVEDEDIIRLVAER >gi|223713588|gb|ACDM01000010.1| GENE 184 198076 - 198285 338 69 aa, chain + ## HITS:1 COG:ECs2533 KEGG:ns NR:ns ## COG: ECs2533 COG1278 # Protein_GI_number: 15831787 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 120 100.0 5e-28 MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG PAAVNVTAI >gi|223713588|gb|ACDM01000010.1| GENE 185 198451 - 199260 553 269 aa, chain + ## HITS:1 COG:rrmA KEGG:ns NR:ns ## COG: rrmA COG0500 # Protein_GI_number: 16129776 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 269 1 269 269 556 100.0 1e-158 MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRA FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV AIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPG PRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLRGDEAVALLQMTPFAWRA KPEVWQTLAAKEVFDCQTDFNIHLWQRSY >gi|223713588|gb|ACDM01000010.1| GENE 186 199257 - 199823 678 188 aa, chain - ## HITS:1 COG:ECs2531 KEGG:ns NR:ns ## COG: ECs2531 COG1971 # Protein_GI_number: 15831785 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 188 19 206 206 324 100.0 5e-89 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAM AVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ ILWTHFHG >gi|223713588|gb|ACDM01000010.1| GENE 187 200252 - 200710 298 152 aa, chain - ## HITS:1 COG:yobD KEGG:ns NR:ns ## COG: yobD COG4811 # Protein_GI_number: 16129774 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 152 1 152 152 256 100.0 1e-68 MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN NVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSRIKAMNLSEDG VLVMQLEQRRLLIRVRNIDDLEKIYKLLVSTQ >gi|223713588|gb|ACDM01000010.1| GENE 188 200765 - 201616 1058 283 aa, chain - ## HITS:1 COG:ECs2529 KEGG:ns NR:ns ## COG: ECs2529 COG3716 # Protein_GI_number: 15831783 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1 283 4 286 286 559 100.0 1e-159 MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEA RKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGD PIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYGYSKGIDIVKDM GGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMP GLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGYACGLLGL >gi|223713588|gb|ACDM01000010.1| GENE 189 201629 - 202429 1029 266 aa, chain - ## HITS:1 COG:ECs2528 KEGG:ns NR:ns ## COG: ECs2528 COG3715 # Protein_GI_number: 15831782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1 266 1 266 266 394 100.0 1e-109 MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLGDMKTGIIIGGTLEMIA LGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAF QHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVALSVGTSEVQNMLNAIPEVVTN GLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAAFTNFNLVALGVIGTVMAVLYIQ LSPKYNRVAGAPAQAAGNNDLDNELD >gi|223713588|gb|ACDM01000010.1| GENE 190 202492 - 203463 1212 323 aa, chain - ## HITS:1 COG:ECs2527_2 KEGG:ns NR:ns ## COG: ECs2527_2 COG3444 # Protein_GI_number: 15831781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 158 323 1 166 166 311 100.0 1e-84 MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTK GVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVE TGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPNDYMVIGLARIDDRLIHGQVAT RWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERV MLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGIE LEVRKVSTDPKLKMMDLISKIDK >gi|223713588|gb|ACDM01000010.1| GENE 191 203926 - 205482 1881 518 aa, chain + ## HITS:1 COG:yoaE_2 KEGG:ns NR:ns ## COG: yoaE_2 COG1253 # Protein_GI_number: 16129770 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli K12 # 231 518 1 288 288 540 100.0 1e-153 MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLLGLSLALIMRLG LLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKATTELHERLENRDHDSGHGK GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIIIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQANVQHDADNPMPMPIPEGAFAEEERYMINGVLTLASRSL RGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG VDVAAIASASPAIIVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAG EFPDADETPEIITDGDGWLVKGGTDLHALQQALDVEHLADDDDIATVAGLVISANGHIPR VGDVIDVGPLHITIIEANDYRVDLVRIVKEQPAHDEDE >gi|223713588|gb|ACDM01000010.1| GENE 192 205486 - 207084 1316 532 aa, chain - ## HITS:1 COG:yoaD_2 KEGG:ns NR:ns ## COG: yoaD_2 COG2200 # Protein_GI_number: 16129769 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 261 532 1 272 272 561 100.0 1e-159 MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQRVVQFANHAVEELDKV LLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLVQDGTLYCSSIFGYRNVPV VDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSNAGVMEMINIDLLTAMLLEPQ LPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVSSQRFPFTINVNGPGATALAWHY LPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQCIGV EILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHVGINVA PSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVKLAIDDFG TGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQE QAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR >gi|223713588|gb|ACDM01000010.1| GENE 193 207215 - 208579 1421 454 aa, chain - ## HITS:1 COG:sdaA KEGG:ns NR:ns ## COG: sdaA COG1760 # Protein_GI_number: 16129768 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli K12 # 1 454 1 454 454 925 100.0 0 MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGH HTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNL PLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAY CNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRA SALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY DHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGG SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVS LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD >gi|223713588|gb|ACDM01000010.1| GENE 194 208763 - 209341 428 192 aa, chain - ## HITS:1 COG:ECs2522 KEGG:ns NR:ns ## COG: ECs2522 COG0494 # Protein_GI_number: 15831776 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 192 1 192 192 342 99.0 2e-94 MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQPGLLLTQRSIHLRKHAG QVAFPGGAVDDTDASAIAAALREAEEEVAIPPSAVEVIGVLPPVDSVTGYQVTPVVGIIP PDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDSHRVWLSWYEQYFVWGMTAGI IRELALQIGVKP >gi|223713588|gb|ACDM01000010.1| GENE 195 209345 - 210706 1052 453 aa, chain - ## HITS:1 COG:pabB KEGG:ns NR:ns ## COG: pabB COG0147 # Protein_GI_number: 16129766 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Escherichia coli K12 # 1 453 1 453 453 927 99.0 0 MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTF GKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPFQGGALGLFGYDLGRRFES LPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDVNARRAWLESQQFSPQEDFTL TSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAP FSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDR AENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRA AFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTLTAINGQIF CSAGGGIVADSQEEAEYQETFDKVNRILKQLEK >gi|223713588|gb|ACDM01000010.1| GENE 196 210780 - 210959 347 59 aa, chain + ## HITS:1 COG:ECs2520 KEGG:ns NR:ns ## COG: ECs2520 COG3140 # Protein_GI_number: 15831774 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 59 1 59 59 83 100.0 1e-16 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE >gi|223713588|gb|ACDM01000010.1| GENE 197 211079 - 211378 233 99 aa, chain - ## HITS:1 COG:no KEGG:S1533 NR:ns ## KEGG: S1533 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 99 21 119 119 187 100.0 7e-47 MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNP GFTEKMVGWAKKMETGERSVIKNPEYFSTYMQEELKALV >gi|223713588|gb|ACDM01000010.1| GENE 198 211800 - 212144 469 114 aa, chain - ## HITS:1 COG:yoaB KEGG:ns NR:ns ## COG: yoaB COG0251 # Protein_GI_number: 16129763 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1 114 17 130 130 209 100.0 9e-55 MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSI LDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV >gi|223713588|gb|ACDM01000010.1| GENE 199 212276 - 214186 1667 636 aa, chain + ## HITS:1 COG:ECs2517 KEGG:ns NR:ns ## COG: ECs2517 COG1199 # Protein_GI_number: 15831771 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Escherichia coli O157:H7 # 1 636 1 636 636 1265 100.0 0 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL LLPSPFDYSRQALLCVPRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR >gi|223713588|gb|ACDM01000010.1| GENE 200 214244 - 214939 685 231 aa, chain + ## HITS:1 COG:yeaZ KEGG:ns NR:ns ## COG: yeaZ COG1214 # Protein_GI_number: 16129761 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Escherichia coli K12 # 1 231 1 231 231 452 100.0 1e-127 MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALA YGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMG EVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLV LRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYLRNNVAWKKLPGKE >gi|223713588|gb|ACDM01000010.1| GENE 201 214979 - 215560 571 193 aa, chain + ## HITS:1 COG:ECs2515 KEGG:ns NR:ns ## COG: ECs2515 COG3065 # Protein_GI_number: 15831769 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 358 98.0 2e-99 MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG KVVAVQNQQGKTRLEIATVPLDSGARPTLGELSRGRIYADVNGFLDPVDFRGQLVTVVGP ITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWY NPGPARVQTVVTE >gi|223713588|gb|ACDM01000010.1| GENE 202 215699 - 217450 1680 583 aa, chain + ## HITS:1 COG:fadD KEGG:ns NR:ns ## COG: fadD COG0318 # Protein_GI_number: 16129759 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 23 583 1 561 561 1149 99.0 0 MLMACISFGVAMTTNTHFRGEELKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYAD QPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAG MIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLST AKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQ NLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQ QVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNE VPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMI LVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCR RQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA >gi|223713588|gb|ACDM01000010.1| GENE 203 217532 - 218647 1124 371 aa, chain + ## HITS:1 COG:rnd KEGG:ns NR:ns ## COG: rnd COG0349 # Protein_GI_number: 16129758 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease D # Organism: Escherichia coli K12 # 1 371 5 375 375 729 100.0 0 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE ALHNLLQEYPQ >gi|223713588|gb|ACDM01000010.1| GENE 204 218701 - 219666 604 321 aa, chain - ## HITS:1 COG:yeaX KEGG:ns NR:ns ## COG: yeaX COG1018 # Protein_GI_number: 16129757 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 321 1 321 321 648 100.0 0 MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSL LSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTPNNLFALIPSARKHLFIAG GIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLE LARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA RSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERA SQQSMLICCSRAKGKRLVLDL >gi|223713588|gb|ACDM01000010.1| GENE 205 219722 - 220846 1230 374 aa, chain - ## HITS:1 COG:ECs2511 KEGG:ns NR:ns ## COG: ECs2511 COG4638 # Protein_GI_number: 15831765 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1 374 1 374 374 801 100.0 0 MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANAN DYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDG NLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACP EVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQY GFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIY FTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG IAHFHNLLAQVFKD >gi|223713588|gb|ACDM01000010.1| GENE 206 220878 - 222308 1460 476 aa, chain - ## HITS:1 COG:ECs2510 KEGG:ns NR:ns ## COG: ECs2510 COG1292 # Protein_GI_number: 15831764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli O157:H7 # 1 476 6 481 481 899 100.0 0 MGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLN IAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAAITGVR PQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILLSGGIF CLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNFLQMSLF TDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTVGCWFFF GVMESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMIIFLASHM DAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTVVLTALP FLVILLVKVGGFIRWLKQDYADIPAHQVEHYLPQTPVEALEKTPVLPAGTVFKGDN >gi|223713588|gb|ACDM01000010.1| GENE 207 222514 - 223599 1054 361 aa, chain - ## HITS:1 COG:yeaU KEGG:ns NR:ns ## COG: yeaU COG0473 # Protein_GI_number: 16129754 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1 361 1 361 361 763 100.0 0 MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPD DWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGVPCPLA GKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQESVFTRRGVDRILRYAFELAQS RPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRWDKQHIDILCARFVMQPERFDVV VASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIAT IWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIAHGPKTPDMKGNATTPQVADAICKIIL R >gi|223713588|gb|ACDM01000010.1| GENE 208 223702 - 224625 856 307 aa, chain + ## HITS:1 COG:ECs2508 KEGG:ns NR:ns ## COG: ECs2508 COG0583 # Protein_GI_number: 15831762 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 307 8 314 314 623 99.0 1e-178 MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVT ITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKA YPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGA PKHLTDLSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGI ALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITVEFLRQYFAEHYP NFSLEHA >gi|223713588|gb|ACDM01000010.1| GENE 209 224752 - 225390 488 212 aa, chain + ## HITS:1 COG:yeaS KEGG:ns NR:ns ## COG: yeaS COG1280 # Protein_GI_number: 16129752 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1 212 1 212 212 359 100.0 2e-99 MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVSSGMKGGYLAACGVFIGDAVLMFL AWAGVATLIKTTPILFNIVRYLGAFYLLYLGSKILYATLKGKNSEAKSDEPQYGAIFKRA LILSLTNPKAILFYVSFFVQFIDVNAPHTGISFFILAATLELVSFCYLSFLIISGAFVTQ YIRTKKKLAKVGNSLIGLMFVGFAARLATLQS >gi|223713588|gb|ACDM01000010.1| GENE 210 225563 - 225922 362 119 aa, chain + ## HITS:1 COG:ECs2506 KEGG:ns NR:ns ## COG: ECs2506 COG3615 # Protein_GI_number: 15831760 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein/domain, possibly involved in tellurite resistance # Organism: Escherichia coli O157:H7 # 1 119 1 119 119 243 100.0 6e-65 MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHS AEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGAQQRKVIHNGK >gi|223713588|gb|ACDM01000010.1| GENE 211 225926 - 226108 292 60 aa, chain + ## HITS:1 COG:no KEGG:ECB_01765 NR:ns ## KEGG: ECB_01765 # Name: yoaG # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 60 1 60 60 96 100.0 3e-19 MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW >gi|223713588|gb|ACDM01000010.1| GENE 212 226256 - 226504 330 82 aa, chain + ## HITS:1 COG:YPO1181 KEGG:ns NR:ns ## COG: YPO1181 COG2261 # Protein_GI_number: 16121476 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 1 82 26 107 107 99 82.0 2e-21 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGGWISTLFGFGKVDGFNF GSFVVAVIGAIVVLFIYRKIKS >gi|223713588|gb|ACDM01000010.1| GENE 213 226771 - 227796 760 341 aa, chain - ## HITS:1 COG:yeaP_2 KEGG:ns NR:ns ## COG: yeaP_2 COG2199 # Protein_GI_number: 16129748 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 168 341 1 174 174 351 100.0 1e-96 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS >gi|223713588|gb|ACDM01000010.1| GENE 214 227979 - 228233 142 84 aa, chain + ## HITS:1 COG:yoaF KEGG:ns NR:ns ## COG: yoaF COG3042 # Protein_GI_number: 16129747 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Escherichia coli K12 # 1 84 1 84 84 154 100.0 3e-38 MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN CKLPGGETIDEWALWRRDHPAGEK >gi|223713588|gb|ACDM01000010.1| GENE 215 228255 - 228602 450 115 aa, chain - ## HITS:1 COG:yeaO KEGG:ns NR:ns ## COG: yeaO COG3189 # Protein_GI_number: 16129746 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 115 8 122 122 222 100.0 2e-58 MNIQCKRVYDPAEQSDGYRILVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD YATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYSAKNTTQNHALVLADWLRSL >gi|223713588|gb|ACDM01000010.1| GENE 216 228657 - 229838 570 393 aa, chain - ## HITS:1 COG:yeaN KEGG:ns NR:ns ## COG: yeaN COG2807 # Protein_GI_number: 16129745 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Escherichia coli K12 # 1 393 1 393 393 641 100.0 0 MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAYSLTTAQTGLLTTLPLL AFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPYLLFGGTAVIGGGIALGNV LLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLALNGFGWQGALLMLMCFPLLA LFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTLFLGINSLVYYVIIGWLPAILIS HGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQRGIAAFVALMCAVGAVGLCFMPAH AITWTLLFGFGSGATMILGLTFIGLRASSAHQAAALSGMAQSVGYLLAACGPPLMGKIHD ANGNWSVPLMGVAILSLLMAIFGLCAGRDKEIR >gi|223713588|gb|ACDM01000010.1| GENE 217 229938 - 230756 321 272 aa, chain + ## HITS:1 COG:yeaM KEGG:ns NR:ns ## COG: yeaM COG2207 # Protein_GI_number: 16129744 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 272 2 273 273 519 100.0 1e-147 MHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWM VPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANR TTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGALGQWA GFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFI TMFKKGLGQTPGRYIARLTTVSPQSAKPDPRQ >gi|223713588|gb|ACDM01000010.1| GENE 218 230713 - 231159 614 148 aa, chain - ## HITS:1 COG:yeaL KEGG:ns NR:ns ## COG: yeaL COG2707 # Protein_GI_number: 16129743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 148 1 148 148 188 100.0 3e-48 MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFPWIEKQGLSIGIIILTI GVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGSQPQLVAGLLVGT VLGVALFRGVPVGPLIAAGLVSLIVGKQ >gi|223713588|gb|ACDM01000010.1| GENE 219 231434 - 231937 517 167 aa, chain - ## HITS:1 COG:ECs2496 KEGG:ns NR:ns ## COG: ECs2496 COG2606 # Protein_GI_number: 15831750 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 320 100.0 8e-88 MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKG NGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLK LVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA >gi|223713588|gb|ACDM01000010.1| GENE 220 231980 - 233452 1069 490 aa, chain - ## HITS:1 COG:yeaJ_2 KEGG:ns NR:ns ## COG: yeaJ_2 COG2199 # Protein_GI_number: 16129740 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 325 490 1 166 166 326 100.0 7e-89 MLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMR ALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDCDTIVEAAAL LPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQS GSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLR NIFYTHDRPLLWRFLNVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDIL YFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRL QKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDE FCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLY VNKQNKNSRS >gi|223713588|gb|ACDM01000010.1| GENE 221 233651 - 234994 827 447 aa, chain - ## HITS:1 COG:yeaI_2 KEGG:ns NR:ns ## COG: yeaI_2 COG2199 # Protein_GI_number: 16129739 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 267 447 1 181 181 356 100.0 6e-98 MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNAVI FLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVSIFYI FRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYNADYSLY VVDYCPDNHTATWGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLASLCCNLLL LTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLTNIYNRRYFFN SVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDILARL EGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRNI SLVMTEADKALREAKSEGGNKVIIHHI >gi|223713588|gb|ACDM01000010.1| GENE 222 235273 - 236556 947 427 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34 [Phaeobacter gallaeciensis BS107] # 1 418 1 433 445 369 44 1e-101 MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDIS EPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQIS KDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAM TAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYE KRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKE VDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEI LAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHK QNATAKG >gi|223713588|gb|ACDM01000010.1| GENE 223 236669 - 238603 2003 644 aa, chain - ## HITS:1 COG:ECs2492 KEGG:ns NR:ns ## COG: ECs2492 COG2766 # Protein_GI_number: 15831746 # Func_class: T Signal transduction mechanisms # Function: Putative Ser protein kinase # Organism: Escherichia coli O157:H7 # 1 644 1 644 644 1293 100.0 0 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS >gi|223713588|gb|ACDM01000010.1| GENE 224 239039 - 239785 872 248 aa, chain + ## HITS:1 COG:yeaF KEGG:ns NR:ns ## COG: yeaF COG3713 # Protein_GI_number: 16129736 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Escherichia coli K12 # 1 248 1 248 248 467 100.0 1e-132 MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDTDVYPVPVINYEGDNFW FRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHLDDRKSTMMAGLSYAHFTQ YGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKE SARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLI STGITYKF >gi|223713588|gb|ACDM01000010.1| GENE 225 239875 - 240729 854 284 aa, chain + ## HITS:1 COG:yeaE KEGG:ns NR:ns ## COG: yeaE COG0656 # Protein_GI_number: 16129735 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli K12 # 1 284 1 284 284 546 100.0 1e-155 MQQKMIQFSGDVSLPAVGQGTWYMGEDASQRKTEVAALRAGIELGLTLIDTAEMYADGGA EKVVGEALTGLREKVFLVSKVYPWNAGGQKAINACEASLRRLNTDYLDLYLLHWSGSFAF EETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLL PWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHAHNISAAQVLLAWVISHQGVMAI PKAATIAHVQQNAAVLEVELSSAELAMLDKAYPAPKGKTALDMV >gi|223713588|gb|ACDM01000010.1| GENE 226 240777 - 241661 1014 294 aa, chain - ## HITS:1 COG:yeaD KEGG:ns NR:ns ## COG: yeaD COG0676 # Protein_GI_number: 16129734 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzymes related to aldose 1-epimerase # Organism: Escherichia coli K12 # 1 294 8 301 301 617 100.0 1e-177 MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQGAHLLSWKPAGEEEVLW LSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGVALTFE LTQSEETKKFWPHDFTLLAHFRVGKTCEIDLESHGEFETTSALHTYFNVGDIAKVSVSGL GDRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVV GWNPGPALSISMGDMPDDGYKTFVCVETAYASETQKVTKEKPAHLAQSIRVAKR >gi|223713588|gb|ACDM01000010.1| GENE 227 241745 - 242740 1180 331 aa, chain - ## HITS:1 COG:ECs2488 KEGG:ns NR:ns ## COG: ECs2488 COG0057 # Protein_GI_number: 15831742 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 331 1 331 331 635 100.0 0 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT GPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA LNDNFVKLVSWYDNETGYSNKVLDLIAHISK >gi|223713588|gb|ACDM01000010.1| GENE 228 243082 - 243495 263 137 aa, chain + ## HITS:1 COG:ECs2487 KEGG:ns NR:ns ## COG: ECs2487 COG0229 # Protein_GI_number: 15831741 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 285 100.0 2e-77 MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKY DSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVN SASLRFTDGENGEEING >gi|223713588|gb|ACDM01000010.1| GENE 229 243537 - 243809 344 90 aa, chain + ## HITS:1 COG:yeaC KEGG:ns NR:ns ## COG: yeaC COG3139 # Protein_GI_number: 16129731 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 90 16 105 105 170 100.0 7e-43 MNLDDIINSMMPEVYQRLSTAVELGKWPDGVALTEEQKENCLQLVMLWQARHNIEAQHMT IDTNGQMVMKSKQQLKEDFGISAKPIAMFK >gi|223713588|gb|ACDM01000010.1| GENE 230 244179 - 245255 1220 358 aa, chain + ## HITS:1 COG:ydjL KEGG:ns NR:ns ## COG: ydjL COG1063 # Protein_GI_number: 16129730 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 358 1 358 358 739 100.0 0 MKALARFGKAFGGYKMIDVPQPMCGPEDVVIEIKAAAICGADMKHYNVDSGSDEFNSIRG HEFAGCIAQVGEKVKDWKVGQRVVSDNSGHVCGVCPACEQGDFLCCTEKVNLGLDNNTWG GGFSKYCLVPGEILKIHRHALWEIPDGVDYEDAAVLDPICNAYKSIAQQSKFLPGQDVVV IGTGPLGLFSVQMARIMGAVNIVVVGLQEDVAVRFPVAKELGATAVVNGSTEDVVARCQQ ICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRVGMGFKPLDFSINDITAWNKSIIGH MAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQWREGFDAMVDKTAIKVIMTYDFDE >gi|223713588|gb|ACDM01000010.1| GENE 231 245282 - 246661 905 459 aa, chain + ## HITS:1 COG:ydjK KEGG:ns NR:ns ## COG: ydjK COG0477 # Protein_GI_number: 16129729 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 459 1 459 459 831 100.0 0 MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGLILAQLKALGWTDNSTT ATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDFLIACRFV MGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNW RVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPV VIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINLKD SIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAVLGYIYSLQTSMLLITLIGF FLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGVTG VFILLGAVSIIVAIAIATIGIETKGVSVESLSIDAVANK >gi|223713588|gb|ACDM01000010.1| GENE 232 246678 - 247721 838 347 aa, chain + ## HITS:1 COG:ydjJ KEGG:ns NR:ns ## COG: ydjJ COG1063 # Protein_GI_number: 16129728 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 347 1 347 347 700 99.0 0 MKNSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFESGPFIPPKDPNQE IGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPN YRGALTHYLCHPESFTYKLPDNMDTMEGALVEAAAVGMHAAMLADVKPGKKIIILGAGCI GLMTLQACKCLGATEIAVVDVLEKRLAMAEQLGATVVINGAKEDTIARCQQFTEDMGADI VFETAGSAVTVKQAPYLVMRGGKIMIVGTVPGDSAINFLKINREVTIQTVFRYANRYPVT IEAISSGRFDVKSMVTHIYDYRDVQQAFEESVNNKRDIIKGVIKISD >gi|223713588|gb|ACDM01000010.1| GENE 233 247742 - 248578 750 278 aa, chain + ## HITS:1 COG:ydjI KEGG:ns NR:ns ## COG: ydjI COG0191 # Protein_GI_number: 16129727 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli K12 # 1 278 1 278 278 553 100.0 1e-157 MLADIRYWENDATNKHYAIAHFNVWNAEMLMGVIDAAEEAKSPVIISFGTGFVGNTSFED FSHMMVSMAQKATVPVITHWDHGRSMEIIHNAWTHGMNSLMRDASAFDFEENIRLTKEAV DFFHPLGIPVEAELGHVGNETVYEEALAGYHYTDPDQAAEFVERTGCDSLAVAIGNQHGV YTSEPQLNFEVVKRVRDAVSVPLVLHGASGISDADIKTAISLGIAKINIHTELCQAAMVA VKENQDQPFLHLEREVRKAVKERALEKIKLFGSDGKAE >gi|223713588|gb|ACDM01000010.1| GENE 234 248583 - 249530 772 315 aa, chain + ## HITS:1 COG:ydjH KEGG:ns NR:ns ## COG: ydjH COG0524 # Protein_GI_number: 16129726 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 315 8 322 322 609 100.0 1e-174 MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK LNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETL DDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGV KNRKLVEQLLEEYEG >gi|223713588|gb|ACDM01000010.1| GENE 235 249540 - 250520 806 326 aa, chain + ## HITS:1 COG:ydjG KEGG:ns NR:ns ## COG: ydjG COG0667 # Protein_GI_number: 16129725 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 326 1 326 326 669 100.0 0 MKKIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYN FGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAA SLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDADHIREYL QYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYSPLEQGLLTGTITRDYVPGGARA NKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLALAWILKQSDLISILSGATAPEQVRE NVAALNINLSDADATLMREMAEALER >gi|223713588|gb|ACDM01000010.1| GENE 236 250657 - 251415 547 252 aa, chain + ## HITS:1 COG:ydjF KEGG:ns NR:ns ## COG: ydjF COG1349 # Protein_GI_number: 16129724 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 252 1 252 252 468 100.0 1e-132 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI AFCKDNNIQLVW >gi|223713588|gb|ACDM01000010.1| GENE 237 251532 - 252890 741 452 aa, chain + ## HITS:1 COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 452 1 452 452 801 100.0 0 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNA AFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLM GTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFL LGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQS NSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSIL MTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMI FFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFM VLGVMLLLCALVLSIFGIETRKVSLEEISEVN >gi|223713588|gb|ACDM01000010.1| GENE 238 252983 - 253624 666 213 aa, chain - ## HITS:1 COG:pncA KEGG:ns NR:ns ## COG: pncA COG1335 # Protein_GI_number: 16129722 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1 213 7 219 219 443 100.0 1e-125 MPPRALLLVDLQNDFCAGGALAVPEGDSTVDVANRLIDWCQSRGEAVIASQDWHPANHGS FASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLHQKAIAAVFHKGENPLVDSY SAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFTVLDALQLGYKVNVITDGCRG VNIQPQDSAHAFMEMSAAGATLYTLADWEETQG >gi|223713588|gb|ACDM01000010.1| GENE 239 253635 - 254651 951 338 aa, chain - ## HITS:1 COG:ECs2474 KEGG:ns NR:ns ## COG: ECs2474 COG0252 # Protein_GI_number: 15831728 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 1 338 1 338 338 680 100.0 0 MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDS SDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIP LAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTTKAHADGFDAFASPNLPPL LEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILR SYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADM TVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTPDD >gi|223713588|gb|ACDM01000010.1| GENE 240 254818 - 256674 1873 618 aa, chain - ## HITS:1 COG:sppA KEGG:ns NR:ns ## COG: sppA COG0616 # Protein_GI_number: 16129720 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Escherichia coli K12 # 1 618 1 618 618 1211 100.0 0 MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALL LDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDL KNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLH GFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYL NTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFG WSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDAR LDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANY IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLS IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA KVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAA FNDPQNRYAFCLTCANMR >gi|223713588|gb|ACDM01000010.1| GENE 241 256617 - 256781 75 54 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_2054 NR:ns ## KEGG: ECUMN_2054 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 54 1 54 54 100 98.0 2e-20 MLQHSPQFLLTSTGWVITITTSIAPVTGVTLSWENTCEPFGDLLPDFLNGRGVC >gi|223713588|gb|ACDM01000010.1| GENE 242 256835 - 257386 617 183 aa, chain + ## HITS:1 COG:ECs2471 KEGG:ns NR:ns ## COG: ECs2471 COG0778 # Protein_GI_number: 15831725 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli O157:H7 # 1 183 1 183 183 363 100.0 1e-101 MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSA VLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQM AAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFV TYF >gi|223713588|gb|ACDM01000010.1| GENE 243 257503 - 258546 1152 347 aa, chain + ## HITS:1 COG:selD KEGG:ns NR:ns ## COG: selD COG0709 # Protein_GI_number: 16129718 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Escherichia coli K12 # 1 347 1 347 347 679 100.0 0 MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLVGNETRDDAAVYDLGNG TSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAILGWPINKLSPEIARE VTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPL GIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEM CQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLCDPQ TSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPARGGRAMVEIR >gi|223713588|gb|ACDM01000010.1| GENE 244 258551 - 260512 1787 653 aa, chain + ## HITS:1 COG:topB KEGG:ns NR:ns ## COG: topB COG0550 # Protein_GI_number: 16129717 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Escherichia coli K12 # 1 653 1 653 653 1326 100.0 0 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR WNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQ LAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAY TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLP QPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVF RKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGF LTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY QLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSGAIA >gi|223713588|gb|ACDM01000010.1| GENE 245 260640 - 261680 296 346 aa, chain + ## HITS:1 COG:no KEGG:B21_01719 NR:ns ## KEGG: B21_01719 # Name: ynjI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 346 1 346 346 700 100.0 0 MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAIT SNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLI APYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESY CALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIW AAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHIC CYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS >gi|223713588|gb|ACDM01000010.1| GENE 246 261797 - 263140 1429 447 aa, chain - ## HITS:1 COG:gdhA KEGG:ns NR:ns ## COG: gdhA COG0334 # Protein_GI_number: 16129715 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Escherichia coli K12 # 1 447 1 447 447 896 100.0 0 MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG EQTNYVQGANIAGFVKVADAMLAQGVI >gi|223713588|gb|ACDM01000010.1| GENE 247 263376 - 263648 108 90 aa, chain + ## HITS:1 COG:no KEGG:B21_01717 NR:ns ## KEGG: B21_01717 # Name: ynjH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 90 1 90 90 178 100.0 6e-44 MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQPCTQCCVYQDQNYSEGA VIKAEGILLQCQRDDKTLSTNPLVWRRVKP >gi|223713588|gb|ACDM01000010.1| GENE 248 263614 - 264021 373 135 aa, chain - ## HITS:1 COG:ynjG KEGG:ns NR:ns ## COG: ynjG COG0494 # Protein_GI_number: 16129713 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 135 1 135 135 242 100.0 1e-64 MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIE ATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADIP LLEAFMALRAARPAD >gi|223713588|gb|ACDM01000010.1| GENE 249 264108 - 264728 515 206 aa, chain + ## HITS:1 COG:ynjF KEGG:ns NR:ns ## COG: ynjF COG0558 # Protein_GI_number: 16129712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli K12 # 1 206 3 208 208 358 99.0 5e-99 MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALPFLALGWYLAALVVILL NRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFILAAPEQNALAGGWLLFAFI GTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTETILLFVLGCLFPAWFAWFAWI FGALCWMTTFTRVWSGYLTLKSLQRQ >gi|223713588|gb|ACDM01000010.1| GENE 250 264737 - 266044 1441 435 aa, chain - ## HITS:1 COG:ynjE KEGG:ns NR:ns ## COG: ynjE COG2897 # Protein_GI_number: 16129711 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 435 6 440 440 845 99.0 0 MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNG PSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGL THISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKL YLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVA QIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQAR GLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTM RSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDP KNPVATGERGPDSSK >gi|223713588|gb|ACDM01000010.1| GENE 251 266111 - 266764 194 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 194 4 201 223 79 30 2e-13 MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGE LWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER SGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR >gi|223713588|gb|ACDM01000010.1| GENE 252 266764 - 268254 1456 496 aa, chain - ## HITS:1 COG:ynjC KEGG:ns NR:ns ## COG: ynjC COG4135 # Protein_GI_number: 16129709 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli K12 # 1 496 1 496 496 704 100.0 0 MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGL GLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAML AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLL SYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEAL INSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGS WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLI AFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL TALVAKWVGYVRQGLR >gi|223713588|gb|ACDM01000010.1| GENE 253 268272 - 269438 996 388 aa, chain - ## HITS:1 COG:ynjB KEGG:ns NR:ns ## COG: ynjB COG4134 # Protein_GI_number: 16129708 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli K12 # 1 388 2 389 389 702 100.0 0 MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTH YAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAET LPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANP GTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWR EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHF VTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQ DLPPVLAEPHAGWVNALEQEWLHRYGTH >gi|223713588|gb|ACDM01000010.1| GENE 254 269448 - 269996 518 182 aa, chain - ## HITS:1 COG:ynjA KEGG:ns NR:ns ## COG: ynjA COG2128 # Protein_GI_number: 16129707 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 182 1 182 182 353 100.0 1e-97 MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDP VVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYA EAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEK RS >gi|223713588|gb|ACDM01000010.1| GENE 255 269996 - 270700 661 234 aa, chain - ## HITS:1 COG:ydjZ KEGG:ns NR:ns ## COG: ydjZ COG0398 # Protein_GI_number: 16129706 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 234 2 235 235 402 100.0 1e-112 MMMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGA LAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMG REVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIAT GLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNA >gi|223713588|gb|ACDM01000010.1| GENE 256 270718 - 271395 830 225 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_1439 NR:ns ## KEGG: EcSMS35_1439 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 225 1 225 225 437 98.0 1e-121 MLQHYSVSWKKGLAALCLLAVAGLSGCDQQENAAAKVEYDGLSNSQPLRVDANNHTVTML VQINGRFLTDDTRHGIVFKDGSNGHKSLFMGYATPKAFYEALKEAGGTPGENMTMDNKET THVTGSKLDISVNWQGAAKAYSFDEVIVDSNGKKLDMRFGGNLTAAEEKKTGCLVCLDSC PVGIVSNATYTYGAVEKRGEVKFKGNASVLPADNTLATVTFKIAE >gi|223713588|gb|ACDM01000010.1| GENE 257 271400 - 272110 642 236 aa, chain - ## HITS:1 COG:ydjX KEGG:ns NR:ns ## COG: ydjX COG0398 # Protein_GI_number: 16129704 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 236 17 252 252 407 99.0 1e-113 MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSGFFGYSLYILLFIIATL LLLPGSILVIAGGIVFGPLLGTLLSLIAAMLASSCSFLLARWLGRDLLLKYVGHSNTFQA IEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMA SDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKNEG >gi|223713588|gb|ACDM01000010.1| GENE 258 272277 - 273083 845 268 aa, chain - ## HITS:1 COG:xthA KEGG:ns NR:ns ## COG: xthA COG0708 # Protein_GI_number: 16129703 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Escherichia coli K12 # 1 268 1 268 268 566 100.0 1e-161 MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQK GHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI KFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFL PEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC CVETGIDYEIRSMEKPSDHAPVWATFRR >gi|223713588|gb|ACDM01000010.1| GENE 259 273529 - 274749 1421 406 aa, chain + ## HITS:1 COG:cstC KEGG:ns NR:ns ## COG: cstC COG4992 # Protein_GI_number: 16129702 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1 406 1 406 406 824 100.0 0 MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPEL REALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFA HDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI DDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMH YGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAK AGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVSRGSS >gi|223713588|gb|ACDM01000010.1| GENE 260 274749 - 275780 1044 343 aa, chain + ## HITS:1 COG:ECs2453 KEGG:ns NR:ns ## COG: ECs2453 COG3138 # Protein_GI_number: 15831707 # Func_class: E Amino acid transport and metabolism # Function: Arginine/ornithine N-succinyltransferase beta subunit # Organism: Escherichia coli O157:H7 # 1 343 2 344 344 726 100.0 0 MVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVFV LEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSE LCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGK RFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLEK EGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHFR VVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKTA >gi|223713588|gb|ACDM01000010.1| GENE 261 275777 - 277255 1280 492 aa, chain + ## HITS:1 COG:astD KEGG:ns NR:ns ## COG: astD COG1012 # Protein_GI_number: 16129700 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 492 1 492 492 965 100.0 0 MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSFAE RHAVVERFAALLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQR SEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAV MRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKIL ALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVA VSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLLTP GIIEMTGVAGVPDEEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLL EARAGIVNWNKPLTGAASTAPFGGIGASGNHRPSAWYAADYCAWPMASLESDSLTLPATL NPGLDFSDEVVR >gi|223713588|gb|ACDM01000010.1| GENE 262 277252 - 278595 1226 447 aa, chain + ## HITS:1 COG:astB KEGG:ns NR:ns ## COG: astB COG3724 # Protein_GI_number: 16129699 # Func_class: E Amino acid transport and metabolism # Function: Succinylarginine dihydrolase # Organism: Escherichia coli K12 # 1 447 1 447 447 890 100.0 0 MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQA VIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADT LDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHN RLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPD VIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTV STYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANG GGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREG REALDVLSQLLNLGSVYPFQREGGGNG >gi|223713588|gb|ACDM01000010.1| GENE 263 278588 - 279556 777 322 aa, chain + ## HITS:1 COG:ydjS KEGG:ns NR:ns ## COG: ydjS COG2988 # Protein_GI_number: 16129698 # Func_class: E Amino acid transport and metabolism # Function: Succinylglutamate desuccinylase # Organism: Escherichia coli K12 # 1 322 1 322 322 663 100.0 0 MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQGALVISAGIHGNETAPV EMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDMNRMFGGRWQLFAESGETC RARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGVLPQRDIPWDEKFLTWLGAAG LEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFGQNDLRQFAVTASAIAALLSGES VGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFMPFEKGTLLAQDGEERFTVTHDVEY VLFPNPLVALGLRAGLMLEKIS >gi|223713588|gb|ACDM01000010.1| GENE 264 279886 - 280371 624 161 aa, chain + ## HITS:1 COG:spy KEGG:ns NR:ns ## COG: spy COG3678 # Protein_GI_number: 16129697 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli K12 # 1 161 1 161 161 229 100.0 1e-60 MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKFGPHQDMMFKDLNLTDA QKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKVKAEAQIAKMEEQRKANMLAHM ETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE >gi|223713588|gb|ACDM01000010.1| GENE 265 280574 - 281149 348 191 aa, chain + ## HITS:1 COG:ydjR KEGG:ns NR:ns ## COG: ydjR COG3758 # Protein_GI_number: 16129696 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 191 22 212 212 401 100.0 1e-112 MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEFSLFPGMERIVT LLEGGEMLLESADRFNHTLKPFQPFAFAADQVVKAKLTAGQMSMDFNIMTRLDVCKAKVR IAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFDGRHTLRLLQPQGKLLFSEIN WLAGHSPDQVQ >gi|223713588|gb|ACDM01000010.1| GENE 266 281109 - 281858 529 249 aa, chain - ## HITS:1 COG:ydjQ KEGG:ns NR:ns ## COG: ydjQ COG0322 # Protein_GI_number: 16129695 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Escherichia coli K12 # 1 249 47 295 295 499 100.0 1e-141 MPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLF NKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLC YGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVAL KEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITEL DPANDQRAS >gi|223713588|gb|ACDM01000010.1| GENE 267 282226 - 283053 903 275 aa, chain - ## HITS:1 COG:nadE KEGG:ns NR:ns ## COG: nadE COG0171 # Protein_GI_number: 16129694 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Escherichia coli K12 # 1 275 1 275 275 553 100.0 1e-157 MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLC QMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQ ALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITGFFTKYGDGGTD INPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDRPSLPDEVALGVTYDNIDDYLEG KNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK >gi|223713588|gb|ACDM01000010.1| GENE 268 283255 - 283593 417 112 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_1315 NR:ns ## KEGG: ECIAI39_1315 # Name: osmE # Def: DNA-binding transcriptional activator OsmE # Organism: E.coli_IAI39 # Pathway: not_defined # 1 112 1 112 112 207 100.0 9e-53 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK >gi|223713588|gb|ACDM01000010.1| GENE 269 283892 - 284212 411 106 aa, chain + ## HITS:1 COG:ECs2444 KEGG:ns NR:ns ## COG: ECs2444 COG1440 # Protein_GI_number: 15831698 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Escherichia coli O157:H7 # 1 93 1 93 106 172 98.0 1e-43 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEVFPETLAGEKGQNADVVLLGPQI AYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN >gi|223713588|gb|ACDM01000010.1| GENE 270 284297 - 285655 1656 452 aa, chain + ## HITS:1 COG:celB KEGG:ns NR:ns ## COG: celB COG1455 # Protein_GI_number: 16129691 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Escherichia coli K12 # 1 452 1 452 452 792 100.0 0 MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMFVLINNVFLSFGEGSF FYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFIGMALAEERKVDALAAGLL SVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVAEMFTFIVRRNWVIKLPDSVP ASVSRSFSALIPGFIILSVMGIIAWALNTWGTNFHQIIMDTISTPLASLGSVVGWAYVIF VPLLWFFGIHGALALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPMLDS FIFLGGSGATLGLILAIFIASRRADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIP FVLVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIAT LIYLPFVVVANKAQNAIDKEESEEDIANALKF >gi|223713588|gb|ACDM01000010.1| GENE 271 285706 - 286056 594 116 aa, chain + ## HITS:1 COG:ECs2442 KEGG:ns NR:ns ## COG: ECs2442 COG1447 # Protein_GI_number: 15831696 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 116 1 116 116 173 100.0 9e-44 MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMA LNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQDHLMTSMLARELITELIELHEKLKA >gi|223713588|gb|ACDM01000010.1| GENE 272 286067 - 286906 769 279 aa, chain + ## HITS:1 COG:celD KEGG:ns NR:ns ## COG: celD COG2207 # Protein_GI_number: 16129689 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 279 2 280 280 519 100.0 1e-147 MQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYFQEING KRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYLPLLPYCFVASQVYRT NNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRLRHYREEQVIDDVPQWLKSTVEKM HDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSV TDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ >gi|223713588|gb|ACDM01000010.1| GENE 273 287011 - 288363 1645 450 aa, chain + ## HITS:1 COG:celF KEGG:ns NR:ns ## COG: celF COG1486 # Protein_GI_number: 16129688 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1 450 1 450 450 939 99.0 0 MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKAKLDIIFDLCQRMID NAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLF KGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGIVTEAVYRHTGFKRFIGVCNIPIGMKM FIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLVNGKSRFAELLDGVASGQLKASSVKNIFD LPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNP ELKVKPKELEQRGGAYYSDAACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCK LGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASNAALSGEFNDVLLALNLSPLVHSDRD AELLAREMILAHEKWLPNFADCIAELKKAH >gi|223713588|gb|ACDM01000010.1| GENE 274 288376 - 289125 643 249 aa, chain + ## HITS:1 COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 249 1 249 249 514 100.0 1e-146 MERLLIVNADDFGLSKGQNYGIIEACRNGIVTSTTALVNGQAIDHAVQLSRDEPSLAIGM HFVLTMGKPLTAMPGLTRDGVLGKWIWQLAEEDALPLEEITQELVSQYLRFIELFGRKPT HLDSHHHVHMFPQIFPIVARFAAEQGIALRADRQMAFDLPVNLRTTQGFSSAFYGEEISE SLFLQVLDDAGHRGDRSLEVMCHPAFIDNTIRQSAYCFPRLTELDVLTSASLKGAIAQRG YRLGSYRDV >gi|223713588|gb|ACDM01000010.1| GENE 275 289383 - 291644 2196 753 aa, chain - ## HITS:1 COG:katE KEGG:ns NR:ns ## COG: katE COG0753 # Protein_GI_number: 16129686 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Escherichia coli K12 # 1 753 1 753 753 1516 99.0 0 MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDT RNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHE RIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVR DIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFW DYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKA SLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLI PEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQI SRLGGPNFHEIPINRPTCPYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRG GFESYQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIR ERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKG RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSL TVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKVADQGEEGIVE ADSADGSFMDELLTLMAAHRVWSRIPKIDKIPA >gi|223713588|gb|ACDM01000010.1| GENE 276 291827 - 292090 172 87 aa, chain + ## HITS:1 COG:no KEGG:SSON_1427 NR:ns ## KEGG: SSON_1427 # Name: not_defined # Def: cell division modulator # Organism: S.sonnei # Pathway: not_defined # 1 87 1 87 87 155 100.0 6e-37 MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESF LRSPAFTVPESAQRWANQIRQEGEVTE >gi|223713588|gb|ACDM01000010.1| GENE 277 292895 - 293182 110 95 aa, chain + ## HITS:1 COG:no KEGG:JW1719 NR:ns ## KEGG: JW1719 # Name: ydjO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 95 177 271 271 192 100.0 4e-48 MLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDI FFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA >gi|223713588|gb|ACDM01000010.1| GENE 278 293186 - 294577 1806 463 aa, chain - ## HITS:1 COG:ydjN KEGG:ns NR:ns ## COG: ydjN COG1823 # Protein_GI_number: 16129683 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Escherichia coli K12 # 1 463 1 463 463 752 99.0 0 MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFGLALHTIYGSDSQVLKD SVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAA LVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSDLSVPQLVLSFIPKNPFADLT GANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAAIDTLQSWVMKLVRLVMQLTPYG VLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFAVHGILLGINGVSPLKYFRKVWPVL TFAFTSRSSAASIPLNVEAQMRRLGVPESIASFAASFGATIGQNGCAGLYPAMLAVMVAP TVGINPLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPL IDMGRTALNVSGSMTAGTLTSQWLKQTDKAILDSEDDAELAHH >gi|223713588|gb|ACDM01000010.1| GENE 279 294710 - 295300 309 196 aa, chain - ## HITS:1 COG:ydjM KEGG:ns NR:ns ## COG: ydjM COG1988 # Protein_GI_number: 16129682 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 196 5 200 200 380 100.0 1e-106 MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKW ISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLT PAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQMIN TLQIQFHRLIKHQVEY >gi|223713588|gb|ACDM01000010.1| GENE 280 295463 - 296131 744 222 aa, chain - ## HITS:1 COG:yniC KEGG:ns NR:ns ## COG: yniC COG0637 # Protein_GI_number: 16129681 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1 222 1 222 222 408 100.0 1e-114 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDL WYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLH MLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIA SKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG >gi|223713588|gb|ACDM01000010.1| GENE 281 296278 - 296814 490 178 aa, chain + ## HITS:1 COG:no KEGG:JW1715 NR:ns ## KEGG: JW1715 # Name: yniB # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 178 1 178 178 338 100.0 4e-92 MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENKEGINAVMLDFTHVMIDM MQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQDSGARMSRQARFLREGVE DQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYILPVICIAAGYVFFSLLGFI >gi|223713588|gb|ACDM01000010.1| GENE 282 296855 - 297715 837 286 aa, chain - ## HITS:1 COG:yniA KEGG:ns NR:ns ## COG: yniA COG3001 # Protein_GI_number: 16129679 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Escherichia coli K12 # 1 286 1 286 286 575 100.0 1e-164 MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFVKCDERELLPGFTAEAD QLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQP QFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVEHIQQRL ASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLAMLPLHTEQPPQIYDGYQ SVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIAQQSLDRLLAA >gi|223713588|gb|ACDM01000010.1| GENE 283 297821 - 298111 293 96 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_2442 NR:ns ## KEGG: ECH74115_2442 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 96 1 96 96 158 100.0 4e-38 MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELGTNTFGLISTQ SEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK >gi|223713588|gb|ACDM01000010.1| GENE 284 298212 - 299141 1010 309 aa, chain - ## HITS:1 COG:pfkB KEGG:ns NR:ns ## COG: pfkB COG1105 # Protein_GI_number: 16129677 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Escherichia coli K12 # 1 309 1 309 309 570 100.0 1e-162 MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFP AGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQ LEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGN IELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQ VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDT QKIYAYLSR >gi|223713588|gb|ACDM01000010.1| GENE 285 299428 - 300186 625 252 aa, chain + ## HITS:1 COG:ydiY KEGG:ns NR:ns ## COG: ydiY COG3137 # Protein_GI_number: 16129676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative salt-induced outer membrane protein # Organism: Escherichia coli K12 # 1 252 1 252 252 463 100.0 1e-130 MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKS SSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASW LTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAY AWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHT DRRTTLSLGYSM >gi|223713588|gb|ACDM01000010.1| GENE 286 300239 - 300451 154 70 aa, chain - ## HITS:1 COG:no KEGG:SFV_1500 NR:ns ## KEGG: SFV_1500 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1 70 3 72 72 134 100.0 9e-31 MCTTPPDGCNNKKSLDACPFCYTPLSRTRDMQDTGMPTKRFDKKHWKMVVVLLAICGAML LLRWAAMIWG >gi|223713588|gb|ACDM01000010.1| GENE 287 300518 - 301162 312 214 aa, chain - ## HITS:1 COG:b1721m KEGG:ns NR:ns ## COG: b1721m COG0666 # Protein_GI_number: 16132225 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1 214 419 632 632 409 100.0 1e-114 MQEIQSLVDNHIIHEDNLVKLLQTKSANETPGLYISMLYGFDEIIDIFLNALTTPIAQEL LNKKLVMSILAMKIHDGEPGLYAAMENNHPLCVTRFLSKINGIAFKYKLSKANIMDLLKG ATAQGTPALYIAMSKGNEDVVLSYISTLGAFAKKHSFSQHQLFTLLAAKNHDNMSAVHIA IHHKHYKTVETYYAAINAISQSLSFSADEIKTYL >gi|223713588|gb|ACDM01000010.1| GENE 288 301944 - 302417 136 157 aa, chain - ## HITS:1 COG:b1721m KEGG:ns NR:ns ## COG: b1721m COG0666 # Protein_GI_number: 16132225 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1 151 1 151 632 288 97.0 2e-78 MSQNDIIIRTHYKSPHRLHIDSDIPTPSSEPINQFARQLITLLDTSDLSSMLSYCVTQEF TANCRKISQNCYSTALFTINFATSPIHTENILITLHYKKEIISLLLETTPIKANHLRSIL DYIEQEELTAEDRNHCMKLSKKIHREKNYTPNSKSQW >gi|223713588|gb|ACDM01000010.1| GENE 289 303001 - 304869 2020 622 aa, chain + ## HITS:1 COG:thrS KEGG:ns NR:ns ## COG: thrS COG0441 # Protein_GI_number: 16129675 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 622 21 642 642 1311 100.0 0 MDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG HAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVS WHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK TAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEA PGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFT QDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEAD LAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGE DNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQ KLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMD VNEVIEKLQQEIRSRSLKQLEE >gi|223713588|gb|ACDM01000010.1| GENE 290 304936 - 305415 665 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 1 158 2 159 159 260 81 4e-68 QEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSS KEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIG MEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ >gi|223713588|gb|ACDM01000010.1| GENE 291 305497 - 305709 358 70 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35 [Shigella flexneri 5 str. 8401] # 1 70 1 70 70 142 98 2e-32 MEVIKMPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDL GLVIACLPYA >gi|223713588|gb|ACDM01000010.1| GENE 292 305762 - 306118 578 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15802128|ref|NP_288150.1| 50S ribosomal protein L20 [Escherichia coli O157:H7 EDL933] # 1 118 1 118 118 227 100 5e-58 MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQL WIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA >gi|223713588|gb|ACDM01000010.1| GENE 293 306569 - 307552 1310 327 aa, chain + ## HITS:1 COG:pheS KEGG:ns NR:ns ## COG: pheS COG0016 # Protein_GI_number: 16129670 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Escherichia coli K12 # 1 327 1 327 327 668 100.0 0 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKA QQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQ IRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGME RLTMLRYGVTDLRSFFENDLRFLKQFK >gi|223713588|gb|ACDM01000010.1| GENE 294 307567 - 309954 2924 795 aa, chain + ## HITS:1 COG:ECs2420_2 KEGG:ns NR:ns ## COG: ECs2420_2 COG0072 # Protein_GI_number: 15831674 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Escherichia coli O157:H7 # 140 795 1 656 656 1294 99.0 0 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLC SFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVA VLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMKEKLRR CGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKLNAD TLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRY ERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLIGHH IADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQ ASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVE MSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNR YEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIG FVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPA ADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAK CVEALKERFQASLRD >gi|223713588|gb|ACDM01000010.1| GENE 295 309959 - 310258 318 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG] # 3 92 4 93 96 127 66 8e-28 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE >gi|223713588|gb|ACDM01000010.1| GENE 296 310359 - 311339 984 326 aa, chain + ## HITS:1 COG:btuC KEGG:ns NR:ns ## COG: btuC COG4139 # Protein_GI_number: 16129667 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, permease component # Organism: Escherichia coli K12 # 1 326 1 326 326 473 100.0 1e-133 MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRT LAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLC AIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMM GGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGEISARQLGLPLWFWRNVLVAATG WMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLALAA AELPIGVVTATLGAPVFIWLLLKAGR >gi|223713588|gb|ACDM01000010.1| GENE 297 311402 - 311953 642 183 aa, chain + ## HITS:1 COG:btuE KEGG:ns NR:ns ## COG: btuE COG0386 # Protein_GI_number: 16129666 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Escherichia coli K12 # 1 183 1 183 183 377 100.0 1e-105 MQDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQYEQLENIQKAWVDRGFMV LGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVA PEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPEDPIVMESIKLA LAK >gi|223713588|gb|ACDM01000010.1| GENE 298 311965 - 312702 764 245 aa, chain + ## HITS:1 COG:ECs2416 KEGG:ns NR:ns ## COG: ECs2416 COG4138 # Protein_GI_number: 15831670 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1 245 5 249 249 455 99.0 1e-128 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE AWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGL AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRM LISTI >gi|223713588|gb|ACDM01000010.1| GENE 299 312780 - 313244 273 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 40 154 65 174 175 109 45 1e-22 MRFCLILITALLLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV DCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYD TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI >gi|223713588|gb|ACDM01000010.1| GENE 300 313491 - 314204 144 237 aa, chain + ## HITS:1 COG:ydiV KEGG:ns NR:ns ## COG: ydiV COG2200 # Protein_GI_number: 16129663 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 1 237 1 237 237 483 100.0 1e-137 MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIPTSRVIAQLTEEQHWQL FSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAGELLKYPFIELLINENYPH LNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRVMLDKSFIQQQITHRSFEP FIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHALQGCLWPAVPINQITTLVQR >gi|223713588|gb|ACDM01000010.1| GENE 301 314267 - 315703 1080 478 aa, chain + ## HITS:1 COG:ydiU KEGG:ns NR:ns ## COG: ydiU COG0397 # Protein_GI_number: 16129662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 478 1 478 478 962 100.0 0 MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGEAL LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETAEPGAMLMRVAPSHLRFGH FEHFYYRRESEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT LSPFVAVDALNEALDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDY TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPA LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS >gi|223713588|gb|ACDM01000010.1| GENE 302 315707 - 315898 181 63 aa, chain - ## HITS:1 COG:ECs2412 KEGG:ns NR:ns ## COG: ECs2412 COG4256 # Protein_GI_number: 15831666 # Func_class: P Inorganic ion transport and metabolism # Function: Hemin uptake protein # Organism: Escherichia coli O157:H7 # 1 63 1 63 63 107 100.0 6e-24 MRYTDSRKLTPETDANHKTASPQPIRRISSQTLLGPDGKLIIDHDGQEYLLRKTQAGKLL LTK >gi|223713588|gb|ACDM01000010.1| GENE 303 316030 - 317076 849 348 aa, chain - ## HITS:1 COG:aroH KEGG:ns NR:ns ## COG: aroH COG0722 # Protein_GI_number: 16129660 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli K12 # 1 348 1 348 348 719 99.0 0 MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEKILNGEDKRLLVIIGPC SIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVGWKGLISDPDLNGSYRVNH GLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSC PVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMTIYQTSGSPYGHIIMRGGKKPNY HADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRRQLEVCEDICQQIRNGSTAIAGIMA ESFLREGTQKIVGSQPLTYGQSITDPCLGWEDTERLVEKLASAVDTRF >gi|223713588|gb|ACDM01000010.1| GENE 304 317233 - 318066 755 277 aa, chain - ## HITS:1 COG:ECs2410 KEGG:ns NR:ns ## COG: ECs2410 COG1806 # Protein_GI_number: 15831664 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 277 1 277 277 552 100.0 1e-157 MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIY HQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNP NNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAAN YPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEV EALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY >gi|223713588|gb|ACDM01000010.1| GENE 305 318399 - 320777 2744 792 aa, chain + ## HITS:1 COG:ppsA KEGG:ns NR:ns ## COG: ppsA COG0574 # Protein_GI_number: 16129658 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Escherichia coli K12 # 1 792 1 792 792 1608 99.0 0 MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTAEAFNQFL DQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQPELENAIREAYAQLSADDE NASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAVKHVFASLFNDRAISYRVHQG YDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDE FYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHGKQVKIEDVPQEQRDIFSLTNEEVQ ELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPETVRSRGQVMERYTLHSQGKIIA EGRAIGHRIGAGPVKVIHDISEMNRIEPGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTC HAAIIARELGIPAVVGCGDATERMKDGENVTVSCAEGDTGYVYAELLEFSVKSSSVETMP DLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFDDQEPQLQNE IREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDE ENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEE LARQGLKRGENGLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVS ELFDERNDAVKALLSMAIRAAKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTV VQTWLSLAELKK >gi|223713588|gb|ACDM01000010.1| GENE 306 320834 - 322480 1210 548 aa, chain - ## HITS:1 COG:ydiD KEGG:ns NR:ns ## COG: ydiD COG0318 # Protein_GI_number: 16129657 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 1 548 19 566 566 1123 100.0 0 MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAA SCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNK CQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADNTSLT TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPA DLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGY AAAGVEIKVVDDARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCR MDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYV VLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLT QDVCEEIE >gi|223713588|gb|ACDM01000010.1| GENE 307 322537 - 322830 319 97 aa, chain - ## HITS:1 COG:ydiT KEGG:ns NR:ns ## COG: ydiT COG2440 # Protein_GI_number: 16129656 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli K12 # 1 97 1 97 97 206 100.0 9e-54 MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHF DSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG >gi|223713588|gb|ACDM01000010.1| GENE 308 322827 - 324116 1192 429 aa, chain - ## HITS:1 COG:ydiS KEGG:ns NR:ns ## COG: ydiS COG0644 # Protein_GI_number: 16129655 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 429 1 429 429 832 100.0 0 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP GFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ AGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIV GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRD MQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK DGIKGATAL >gi|223713588|gb|ACDM01000010.1| GENE 309 324172 - 325110 1040 312 aa, chain - ## HITS:1 COG:ydiR KEGG:ns NR:ns ## COG: ydiR COG2025 # Protein_GI_number: 16129654 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1 312 1 312 312 620 100.0 1e-177 MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDA LQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRE RRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY KVVPALISQLSR >gi|223713588|gb|ACDM01000010.1| GENE 310 325130 - 325894 787 254 aa, chain - ## HITS:1 COG:ydiQ KEGG:ns NR:ns ## COG: ydiQ COG2086 # Protein_GI_number: 16129653 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli K12 # 1 254 1 254 254 467 100.0 1e-131 MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAASQLATDDDEIAALTVG GSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLIFGEGSG DLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLEDDVEVIELSVPAVLCVTSDI NVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAELVGIRVPPQTERKHIIIDNDSPE AIAELAEHLKKALN >gi|223713588|gb|ACDM01000010.1| GENE 311 326210 - 327121 581 303 aa, chain + ## HITS:1 COG:ydiP KEGG:ns NR:ns ## COG: ydiP COG2207 # Protein_GI_number: 16129652 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 303 1 303 303 622 100.0 1e-178 MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDS SLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAA GQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDV LIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWS LTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVS LVG >gi|223713588|gb|ACDM01000010.1| GENE 312 327164 - 328315 1453 383 aa, chain - ## HITS:1 COG:ECs2402 KEGG:ns NR:ns ## COG: ECs2402 COG1960 # Protein_GI_number: 15831656 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1 383 19 401 401 801 100.0 0 MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEF GGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAY ALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKKA FTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEM ERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLK VAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERI GGGTDEIMIYVAGRQILKDYQNK >gi|223713588|gb|ACDM01000010.1| GENE 313 328329 - 329924 1589 531 aa, chain - ## HITS:1 COG:ydiF KEGG:ns NR:ns ## COG: ydiF COG4670 # Protein_GI_number: 16129650 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Escherichia coli K12 # 1 531 1 531 531 1069 100.0 0 MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTP RNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGV LTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIA PDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSV RIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMR KGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMT SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTA GSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGL HLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH >gi|223713588|gb|ACDM01000010.1| GENE 314 330067 - 330825 845 252 aa, chain - ## HITS:1 COG:aroD KEGG:ns NR:ns ## COG: aroD COG0710 # Protein_GI_number: 16129649 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Escherichia coli K12 # 1 252 1 252 252 449 100.0 1e-126 MKTVTVKDLVIGTGAPKIIVSLMAKDIASVKSEALAYREADFDILEWRVDHYADLSNVES VMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTG DDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLRKMQSFDADIPKIALMPQSTSD VLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEVFGSAATFGAVKKASAPGQISVN DLRTVLTILHQA >gi|223713588|gb|ACDM01000010.1| GENE 315 330856 - 331722 873 288 aa, chain - ## HITS:1 COG:ydiB KEGG:ns NR:ns ## COG: ydiB COG0169 # Protein_GI_number: 16129648 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli K12 # 1 288 1 288 288 581 100.0 1e-166 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALK MRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGF DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT VTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK LLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVMGFGA >gi|223713588|gb|ACDM01000010.1| GENE 316 331734 - 332999 1003 421 aa, chain - ## HITS:1 COG:ydiN KEGG:ns NR:ns ## COG: ydiN COG0477 # Protein_GI_number: 16129647 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 421 3 423 423 726 100.0 0 MSQNKAFSTPFILAVLCIYFSYFLHGISVITLAQNMSSLAEKFSTDNAGIAYLISGIGLG RLISILFFGVISDKFGRRAVILMAVIMYLLFFFGIPACPNLTLAYGLAVCVGIANSALDT GGYPALMECFPKASGSAVILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLI TLMLLKSKFPSQLVDASVTNELPQMNSKPLVWLEGVSSVLFGVAAFSTFYVIVVWMPKYA MAFAGMSEAEALKTISYYSMGSLVCVFIFAALLKKMVRPIWANVFNSALATITAAIIYLY PSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFFPKSKAKVTSIYMMMGGLANFVIPLITG YLSNIGLQYIIVLDFTFALLALITAIIVFIRYYRVFIIPENDVRFGERKFCTRLNTIKHR G >gi|223713588|gb|ACDM01000010.1| GENE 317 333226 - 334440 867 404 aa, chain - ## HITS:1 COG:ydiM KEGG:ns NR:ns ## COG: ydiM COG0477 # Protein_GI_number: 16129646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 404 1 404 404 720 100.0 0 MKNPYFPTALGLYFNYLVHGMGVLLMSLNMASLETLWQTNAAGVSIVISSLGIGRLSVLL FAGLLSDRFGRRPFIMLGMCCYMAFFFGILQTNNIIIAYVFGFLAGMANSFLDAGTYPSL MEAFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLYR CTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGYISMATFYLVSQWLAQYGQFVAG MSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLLMLYTFISFIALFTVCLHPTFYV VIIFAFVIGFTSAGGVVQIGLTLMAERFPYAKGKATGIYYSAGSIATFTIPLITAHLSQR SIADIMWFDTAIAAIGFLLALFIGLRSRKKTRHHSLKENVAPGG >gi|223713588|gb|ACDM01000010.1| GENE 318 334540 - 334896 175 118 aa, chain - ## HITS:1 COG:no KEGG:JW1679 NR:ns ## KEGG: JW1679 # Name: ydiL # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 118 1 118 118 242 100.0 3e-63 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC >gi|223713588|gb|ACDM01000010.1| GENE 319 335325 - 336437 1351 370 aa, chain - ## HITS:1 COG:ECs2395 KEGG:ns NR:ns ## COG: ECs2395 COG0628 # Protein_GI_number: 15831649 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 370 1 370 370 584 99.0 1e-167 MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMF GRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIG AKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWR GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLI RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILE ELGEIEKPNK >gi|223713588|gb|ACDM01000010.1| GENE 320 336826 - 339882 2539 1018 aa, chain + ## HITS:1 COG:ydiJ_1 KEGG:ns NR:ns ## COG: ydiJ_1 COG0277 # Protein_GI_number: 16129643 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1 542 1 542 542 1130 100.0 0 MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTDNSIYQLLPDAVVFPRS TADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVDMSRHMNRIIEINPEEGWV RVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGV RAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVYQRCRQQRQLIIDNFPKLNRFLT GYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARLDITRLPKVRRLVNVKYDSFDSALR NAPFMVEARALSVETVDSKVLNLAREDIVWHSVSELITDVPDQEMLGLNIVEFAGDDEAL IDERVNALCARLDELIASHQAGVIGWQVCRELAGVERIYAMRKKAVGLLGNAKGAAKPIP FAEDTCVPPEHLADYIAEFRALLDSHGLSYGMFGHVDAGVLHVRPALDMCDPQQEILMKQ ISDDVVALTAKYGGLLWGEHGKGFRAEYSPAFFGEELFAELRKVKAAFDPHNRLNPGKIC PPEGLDAPMMKVDAVKRGTFDRQIPIAVRQQWRGAMECNGNGLCFNFDARSPMCPSMKIT QNRIHSPKGRATLVREWLRLLADRGVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEY DFSHEVKEAMSGCLACKACSTQCPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYA PLMARAPKTFNFFINQPLVRKLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESL NAEQKARTVLVVQDPFTSYYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRF AKTAKKTADFLNRMAKLGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASAL ESQPVATVSGESWYFFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHE AKNHENSLGIYELSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK >gi|223713588|gb|ACDM01000010.1| GENE 321 339879 - 340289 296 136 aa, chain + ## HITS:1 COG:ydiI KEGG:ns NR:ns ## COG: ydiI COG2050 # Protein_GI_number: 16129642 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1 136 1 136 136 276 100.0 9e-75 MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVV LAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFD EKGRLCCSSRLTTAIL >gi|223713588|gb|ACDM01000010.1| GENE 322 340389 - 340577 312 62 aa, chain + ## HITS:1 COG:no KEGG:SbBS512_E1886 NR:ns ## KEGG: SbBS512_E1886 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1 62 28 89 89 109 100.0 2e-23 MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTLSSAELKEEIYFAWRLG VH >gi|223713588|gb|ACDM01000010.1| GENE 323 341125 - 341493 508 122 aa, chain + ## HITS:1 COG:ydiC KEGG:ns NR:ns ## COG: ydiC COG0316 # Protein_GI_number: 16129640 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 122 1 122 122 252 100.0 9e-68 MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSV SEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF GV >gi|223713588|gb|ACDM01000010.1| GENE 324 341463 - 342989 1439 508 aa, chain + ## HITS:1 COG:ynhE KEGG:ns NR:ns ## COG: ynhE COG0719 # Protein_GI_number: 16129639 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli K12 # 1 508 1 508 508 1056 100.0 0 MWLWRKLWGIGGTMSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVRAIS AKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDTCASEP GAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLAEQGIIFC SFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRI NAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKNAEVKYSTVQNW FPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCILRGDNSIGEFYSVA LTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDS MLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFC KDVFSELPLEFAVEAQKLLAISLEHSVG >gi|223713588|gb|ACDM01000010.1| GENE 325 342999 - 343745 753 248 aa, chain + ## HITS:1 COG:ynhD KEGG:ns NR:ns ## COG: ynhD COG0396 # Protein_GI_number: 16129638 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Escherichia coli K12 # 1 248 1 248 248 489 100.0 1e-138 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV EFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG YGWLTEQQ >gi|223713588|gb|ACDM01000010.1| GENE 326 343720 - 344991 1114 423 aa, chain + ## HITS:1 COG:ynhC KEGG:ns NR:ns ## COG: ynhC COG0719 # Protein_GI_number: 16129637 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli K12 # 1 423 1 423 423 806 100.0 0 MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINS QFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQGLPDA IQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEG AEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDAT AFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQL HKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSH GATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPG GAR >gi|223713588|gb|ACDM01000010.1| GENE 327 344988 - 346208 1321 406 aa, chain + ## HITS:1 COG:csdB KEGG:ns NR:ns ## COG: csdB COG0520 # Protein_GI_number: 16129636 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli K12 # 1 406 1 406 406 828 100.0 0 MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHT LSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTE NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN NIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRT GHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG >gi|223713588|gb|ACDM01000010.1| GENE 328 346221 - 346637 607 138 aa, chain + ## HITS:1 COG:ynhA KEGG:ns NR:ns ## COG: ynhA COG2166 # Protein_GI_number: 16129635 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Escherichia coli K12 # 1 126 1 126 138 246 99.0 8e-66 MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQDCQSQVWIVMR QNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRS QGLEAMIRAIRAKAAALS >gi|223713588|gb|ACDM01000010.1| GENE 329 346786 - 347790 743 334 aa, chain + ## HITS:1 COG:ynhG KEGG:ns NR:ns ## COG: ynhG COG1376 # Protein_GI_number: 16129634 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 334 1 334 334 608 100.0 1e-174 MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDT AAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVY PIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYA LRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYS VEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPV SVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ >gi|223713588|gb|ACDM01000010.1| GENE 330 347854 - 348090 322 78 aa, chain - ## HITS:1 COG:ECs2384 KEGG:ns NR:ns ## COG: ECs2384 COG4238 # Protein_GI_number: 15831638 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein lipoprotein # Organism: Escherichia coli O157:H7 # 1 78 1 78 78 105 100.0 2e-23 MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD DAARANQRLDNMATKYRK >gi|223713588|gb|ACDM01000010.1| GENE 331 348401 - 349813 1516 470 aa, chain - ## HITS:1 COG:ECs2383 KEGG:ns NR:ns ## COG: ECs2383 COG0469 # Protein_GI_number: 15831637 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Escherichia coli O157:H7 # 1 470 1 470 470 884 100.0 0 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF GCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGI MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCR GAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLV KEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL >gi|223713588|gb|ACDM01000010.1| GENE 332 350370 - 350579 257 69 aa, chain + ## HITS:1 COG:no KEGG:LF82_2868 NR:ns ## KEGG: LF82_2868 # Name: ydhZ # Def: uncharacterized protein YdhZ # Organism: E.coli_LF82 # Pathway: not_defined # 1 69 1 69 69 109 100.0 3e-23 MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM ETVINALVK >gi|223713588|gb|ACDM01000010.1| GENE 333 351034 - 351660 434 208 aa, chain + ## HITS:1 COG:ECs2381 KEGG:ns NR:ns ## COG: ECs2381 COG0437 # Protein_GI_number: 15831635 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 208 1 208 208 368 100.0 1e-102 MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS SKCVLCGECANACPTGALKIIEWKDITV >gi|223713588|gb|ACDM01000010.1| GENE 334 351681 - 353783 1855 700 aa, chain + ## HITS:1 COG:ydhV KEGG:ns NR:ns ## COG: ydhV COG2414 # Protein_GI_number: 16129629 # Func_class: C Energy production and conversion # Function: Aldehyde:ferredoxin oxidoreductase # Organism: Escherichia coli K12 # 1 700 1 700 700 1496 100.0 0 MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVF ATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSP VWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSR NHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTP QSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKY TVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGR VIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNF IKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQ VGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIK YAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDL AAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLT MFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA >gi|223713588|gb|ACDM01000010.1| GENE 335 353796 - 354434 438 212 aa, chain + ## HITS:1 COG:no KEGG:B21_01631 NR:ns ## KEGG: B21_01631 # Name: ydhW # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 212 4 215 215 375 99.0 1e-103 MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAV FLSPPYLVAEEELSALLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQ DICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESS TAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP >gi|223713588|gb|ACDM01000010.1| GENE 336 354498 - 355166 231 222 aa, chain + ## HITS:1 COG:ydhX KEGG:ns NR:ns ## COG: ydhX COG0437 # Protein_GI_number: 16129627 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 222 18 239 239 457 100.0 1e-129 MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVE KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR EDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV >gi|223713588|gb|ACDM01000010.1| GENE 337 355163 - 355948 621 261 aa, chain + ## HITS:1 COG:ydhU KEGG:ns NR:ns ## COG: ydhU COG4117 # Protein_GI_number: 16129626 # Func_class: C Energy production and conversion # Function: Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) # Organism: Escherichia coli K12 # 1 261 1 261 261 484 100.0 1e-136 MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSAT DHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLA CWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQ QVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYL CTTGRTPHETFKSMVDGYHRH >gi|223713588|gb|ACDM01000010.1| GENE 338 355952 - 356764 278 270 aa, chain + ## HITS:1 COG:no KEGG:B21_01628 NR:ns ## KEGG: B21_01628 # Name: ydhT # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 270 1 270 270 517 100.0 1e-145 MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLA DENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGY SVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVAS NGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGER VRFAVAIEGENNIRAGVRYRLNEQHQFVEC >gi|223713588|gb|ACDM01000010.1| GENE 339 356776 - 358380 817 534 aa, chain - ## HITS:1 COG:ydhS KEGG:ns NR:ns ## COG: ydhS COG4529 # Protein_GI_number: 16129624 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 534 1 534 534 1087 100.0 0 MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASI EIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQ KFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSP WSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITL LSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWS QRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAV QEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEI NESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQ PEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD >gi|223713588|gb|ACDM01000010.1| GENE 340 358506 - 358811 323 101 aa, chain - ## HITS:1 COG:no KEGG:SSON_1489 NR:ns ## KEGG: SSON_1489 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 101 1 101 101 191 100.0 8e-48 MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEK SALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA >gi|223713588|gb|ACDM01000010.1| GENE 341 359384 - 360640 878 418 aa, chain + ## HITS:1 COG:ydhQ KEGG:ns NR:ns ## COG: ydhQ COG3468 # Protein_GI_number: 16129622 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 418 1 418 418 701 99.0 0 MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLE NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVF MLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAEL QQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEG AICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA >gi|223713588|gb|ACDM01000010.1| GENE 342 360681 - 362054 1533 457 aa, chain - ## HITS:1 COG:ECs2372 KEGG:ns NR:ns ## COG: ECs2372 COG0534 # Protein_GI_number: 15831626 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli O157:H7 # 1 457 1 457 457 799 99.0 0 MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILF GHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENID PALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIY GHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ LGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVG YRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLL AAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAG FWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR >gi|223713588|gb|ACDM01000010.1| GENE 343 362269 - 362910 753 213 aa, chain + ## HITS:1 COG:ribC KEGG:ns NR:ns ## COG: ribC COG0307 # Protein_GI_number: 16129620 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Escherichia coli K12 # 1 213 1 213 213 426 100.0 1e-119 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV NIEIDPQTQAVVDTVERVLAARENAMNQPGTEA >gi|223713588|gb|ACDM01000010.1| GENE 344 362950 - 364098 975 382 aa, chain - ## HITS:1 COG:cfa KEGG:ns NR:ns ## COG: cfa COG2230 # Protein_GI_number: 16129619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Escherichia coli K12 # 1 382 1 382 382 812 100.0 0 MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGE SYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHY DLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGG LAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEH VGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQS SEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRA RDIQLWQVVFSRGVENGLRVAR >gi|223713588|gb|ACDM01000010.1| GENE 345 364389 - 365600 1184 403 aa, chain - ## HITS:1 COG:ECs2369 KEGG:ns NR:ns ## COG: ECs2369 COG0477 # Protein_GI_number: 15831623 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 403 1 403 403 706 99.0 0 MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLL WGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVT DYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWL KPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVI GLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEIL IPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTP LLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH >gi|223713588|gb|ACDM01000010.1| GENE 346 365713 - 366645 593 310 aa, chain + ## HITS:1 COG:ECs2368 KEGG:ns NR:ns ## COG: ECs2368 COG0583 # Protein_GI_number: 15831622 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 310 1 310 310 622 100.0 1e-178 MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTA AGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDD VELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLAL MDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMV PTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR EPEETPATGD >gi|223713588|gb|ACDM01000010.1| GENE 347 366642 - 367667 1124 341 aa, chain - ## HITS:1 COG:ECs2367 KEGG:ns NR:ns ## COG: ECs2367 COG1609 # Protein_GI_number: 15831621 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 341 1 341 341 700 100.0 0 MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE IGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR >gi|223713588|gb|ACDM01000010.1| GENE 348 367966 - 368055 105 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTDLKFSLVTTIIVLGLIVAVGLTAALH >gi|223713588|gb|ACDM01000010.1| GENE 349 368221 - 369390 1289 389 aa, chain + ## HITS:1 COG:ydhP KEGG:ns NR:ns ## COG: ydhP COG2814 # Protein_GI_number: 16129615 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 389 1 389 389 571 100.0 1e-163 MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLM TLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAAS VVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSL PKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVT AMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVW GAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPV MGAIVAGLALLLVFMSARKQPETVCVANS >gi|223713588|gb|ACDM01000010.1| GENE 350 369625 - 370206 461 193 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 193 1 199 201 182 44 2e-44 MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS EGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFG SGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWA LVNWEFIAKNLAA >gi|223713588|gb|ACDM01000010.1| GENE 351 370334 - 371149 518 271 aa, chain - ## HITS:1 COG:ydhO KEGG:ns NR:ns ## COG: ydhO COG0791 # Protein_GI_number: 16129613 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Escherichia coli K12 # 1 271 1 271 271 422 100.0 1e-118 MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTA KKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVK VKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDL VKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRT GQEIQITSLSEDYWQRHYVGARRVMTPKTLR >gi|223713588|gb|ACDM01000010.1| GENE 352 371483 - 371830 525 115 aa, chain + ## HITS:1 COG:ECs2363 KEGG:ns NR:ns ## COG: ECs2363 COG0278 # Protein_GI_number: 15831617 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin-related protein # Organism: Escherichia coli O157:H7 # 1 115 1 115 115 225 100.0 1e-59 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSEEPDAE >gi|223713588|gb|ACDM01000010.1| GENE 353 371881 - 376497 3601 1538 aa, chain - ## HITS:1 COG:lhr KEGG:ns NR:ns ## COG: lhr COG1201 # Protein_GI_number: 16129611 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Escherichia coli K12 # 1 1538 1 1538 1538 2924 100.0 0 MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLA AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG ETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDE VHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPA MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTN SRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV GGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVD EWYSRVRRAAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQL LAVTSGGTIPDRGMYSVLLPEGEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQI TRDQVIVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEEN TIANIQGLIEEQRNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWAVAIAGR IHALWGADASVVASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARF RECAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPA LERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSEL LRNLLGQVDPGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRH TGSSEEVASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRV SYPLRDLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEV FRRLRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVM RVIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVALH LQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSALQE ALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPN LAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTLCRSMEDS GRIMRGRFVEGLGGAQFAERLTIDRLRDLATQATQTRHYTPVALSANDPANVWGNLLPWP AHPATLVPTRRAGALVVVSGGKLLLYLAQGGKKMLVWQEKEELLAPEVFHALTTALRREP RLRFTLTEVNDLPVRQTPMFTLLREAGFSSSPQGLDWG >gi|223713588|gb|ACDM01000010.1| GENE 354 376590 - 376982 335 130 aa, chain - ## HITS:1 COG:rnt KEGG:ns NR:ns ## COG: rnt COG0847 # Protein_GI_number: 16129610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1 130 86 215 215 263 100.0 6e-71 DRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHP FATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLG GWPLSAAEEV Prediction of potential genes in microbial genomes Time: Mon May 16 18:41:15 2011 Seq name: gi|223713587|gb|ACDM01000011.1| Escherichia sp. 4_1_40B cont1.11, whole genome shotgun sequence Length of sequence - 19695 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 12, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 3 - 249 252 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 277 - 336 3.9 - Term 308 - 343 5.2 2 1 Op 2 4/0.600 - CDS 352 - 759 216 ## PROTEIN SUPPORTED gi|15900839|ref|NP_345443.1| lactoylglutathione lyase 3 1 Op 3 6/0.000 - CDS 840 - 1937 1190 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 4 1 Op 4 . - CDS 1974 - 2573 552 ## COG1309 Transcriptional regulator - Prom 2784 - 2843 2.2 + Prom 2882 - 2941 4.1 5 2 Op 1 3/0.600 + CDS 2964 - 3860 1021 ## COG4989 Predicted oxidoreductase 6 2 Op 2 . + CDS 3926 - 4462 718 ## COG2032 Cu/Zn superoxide dismutase + Term 4535 - 4570 2.4 - Term 4288 - 4325 2.2 7 3 Op 1 6/0.000 - CDS 4463 - 6475 1373 ## COG1289 Predicted membrane protein 8 3 Op 2 . - CDS 6475 - 7332 559 ## COG1566 Multidrug resistance efflux pump 9 3 Op 3 . - CDS 7335 - 7571 113 ## ECUMN_1934 conserved hypothetical protein; putative inner membrane protein - Prom 7715 - 7774 9.9 + Prom 7559 - 7618 6.8 10 4 Tu 1 . + CDS 7766 - 8206 345 ## COG1846 Transcriptional regulators + Term 8216 - 8260 4.3 - Term 8201 - 8244 5.5 11 5 Tu 1 . - CDS 8253 - 8720 570 ## COG3133 Outer membrane lipoprotein - Prom 8819 - 8878 6.9 + Prom 8865 - 8924 3.2 12 6 Tu 1 . + CDS 8994 - 10103 848 ## COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases 13 7 Op 1 3/0.600 + CDS 10207 - 10530 293 ## COG3895 Predicted periplasmic protein 14 7 Op 2 5/0.200 + CDS 10589 - 11245 669 ## COG0259 Pyridoxamine-phosphate oxidase + Prom 11250 - 11309 3.2 15 8 Op 1 5/0.200 + CDS 11374 - 12648 833 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 12664 - 12701 7.8 16 8 Op 2 . + CDS 12710 - 13570 886 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase + Term 13580 - 13622 5.0 - Term 13564 - 13609 5.9 17 9 Tu 1 . - CDS 13614 - 14219 664 ## COG0625 Glutathione S-transferase - Prom 14240 - 14299 4.2 - Term 14267 - 14301 5.2 18 10 Tu 1 . - CDS 14325 - 15827 1556 ## COG3104 Dipeptide/tripeptide permease - Prom 15847 - 15906 5.9 19 11 Tu 1 . - CDS 16110 - 16310 61 ## ECBD_2010 hypothetical protein - Prom 16373 - 16432 2.6 20 12 Op 1 10/0.000 - CDS 16438 - 17073 640 ## COG0177 Predicted EndoIII-related endonuclease 21 12 Op 2 13/0.000 - CDS 17073 - 17768 769 ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 22 12 Op 3 12/0.000 - CDS 17772 - 18392 547 ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 23 12 Op 4 12/0.000 - CDS 18396 - 19454 822 ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 24 12 Op 5 . - CDS 19455 - 19694 251 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Predicted protein(s) >gi|223713587|gb|ACDM01000011.1| GENE 1 3 - 249 252 82 aa, chain - ## HITS:1 COG:rnt KEGG:ns NR:ns ## COG: rnt COG0847 # Protein_GI_number: 16129610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1 82 1 82 215 173 100.0 5e-44 MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHF HVEPFVGANLQPEALAFNGIDP >gi|223713587|gb|ACDM01000011.1| GENE 2 352 - 759 216 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900839|ref|NP_345443.1| lactoylglutathione lyase [Streptococcus pneumoniae TIGR4] # 2 127 4 126 126 87 38 5e-17 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYN WGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYK IELIEEKDAGRGLGN >gi|223713587|gb|ACDM01000011.1| GENE 3 840 - 1937 1190 365 aa, chain - ## HITS:1 COG:nemA KEGG:ns NR:ns ## COG: nemA COG1902 # Protein_GI_number: 16129608 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1 365 1 365 365 702 100.0 0 MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEAT QISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQLWHTGRISHASLQPGGQAP VAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGIVNDFRQAIANAREAGFDLVE LHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIEEWGADRIGIRVSPIGT FQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIG AGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAESFYGGGAEGYT DYPTL >gi|223713587|gb|ACDM01000011.1| GENE 4 1974 - 2573 552 199 aa, chain - ## HITS:1 COG:ydhM KEGG:ns NR:ns ## COG: ydhM COG1309 # Protein_GI_number: 16129607 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 199 1 199 199 391 100.0 1e-109 MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML ERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLSE DMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSF EPLENALAHVKNIIATPAV >gi|223713587|gb|ACDM01000011.1| GENE 5 2964 - 3860 1021 298 aa, chain + ## HITS:1 COG:ydhF KEGG:ns NR:ns ## COG: ydhF COG4989 # Protein_GI_number: 16129605 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Escherichia coli K12 # 1 298 1 298 298 610 99.0 1e-174 MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQC EAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATD HLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQ VEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAG SIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP >gi|223713587|gb|ACDM01000011.1| GENE 6 3926 - 4462 718 178 aa, chain + ## HITS:1 COG:ECs2355 KEGG:ns NR:ns ## COG: ECs2355 COG2032 # Protein_GI_number: 15831609 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Escherichia coli O157:H7 # 6 178 1 173 173 301 99.0 5e-82 MNGGPMKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPD LKALPPGEHGFHIHAKGSCQPATKDGKASAAESASGHLDPQNTGKHEGPEGAGHLGDLPA LVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK >gi|223713587|gb|ACDM01000011.1| GENE 7 4463 - 6475 1373 670 aa, chain - ## HITS:1 COG:ydhK KEGG:ns NR:ns ## COG: ydhK COG1289 # Protein_GI_number: 16129603 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 670 1 670 670 1222 100.0 0 MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT VGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAY AFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALL TALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNAR LNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPL RPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAM WSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLS LFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTN PPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTL SESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRD NCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLE QAPPQGTLAS >gi|223713587|gb|ACDM01000011.1| GENE 8 6475 - 7332 559 285 aa, chain - ## HITS:1 COG:ydhJ KEGG:ns NR:ns ## COG: ydhJ COG1566 # Protein_GI_number: 16129602 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 285 15 299 299 551 100.0 1e-157 MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNI KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE LDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ >gi|223713587|gb|ACDM01000011.1| GENE 9 7335 - 7571 113 78 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_1934 NR:ns ## KEGG: ECUMN_1934 # Name: ydhI # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 78 1 78 78 105 100.0 4e-22 MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLLRGWIYAGDIWHPLLMD LSLFAICVCLALAILIAW >gi|223713587|gb|ACDM01000011.1| GENE 10 7766 - 8206 345 146 aa, chain + ## HITS:1 COG:ECs2351 KEGG:ns NR:ns ## COG: ECs2351 COG1846 # Protein_GI_number: 15831605 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 146 1 146 146 241 100.0 4e-64 MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGI EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEAVINKTRAEILHGI SAEELEQLITLIAKLEHNIIELQAKG >gi|223713587|gb|ACDM01000011.1| GENE 11 8253 - 8720 570 155 aa, chain - ## HITS:1 COG:slyB KEGG:ns NR:ns ## COG: slyB COG3133 # Protein_GI_number: 16129599 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein # Organism: Escherichia coli K12 # 1 155 1 155 155 212 99.0 2e-55 MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR >gi|223713587|gb|ACDM01000011.1| GENE 12 8994 - 10103 848 369 aa, chain + ## HITS:1 COG:ydhH KEGG:ns NR:ns ## COG: ydhH COG2377 # Protein_GI_number: 16129598 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted molecular chaperone distantly related to HSP70-fold metalloproteases # Organism: Escherichia coli K12 # 1 369 1 369 369 712 99.0 0 MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSLKQAVLDICQGQQLTLS QFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVWHEPTGVAPHTLQIGDNNQ IVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPTERRMVLNIGGIANLSLLIPG QPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGKVILPLLQNMLSDPYFSQPAPKS TGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAVTISEQVLLSGGCERLMVCGGGSRN PLLMARLAALLPGTEVTTTDAVGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASQETV LGAIFPANP >gi|223713587|gb|ACDM01000011.1| GENE 13 10207 - 10530 293 107 aa, chain + ## HITS:1 COG:STM1447 KEGG:ns NR:ns ## COG: STM1447 COG3895 # Protein_GI_number: 16764795 # Func_class: R General function prediction only # Function: Predicted periplasmic protein # Organism: Salmonella typhimurium LT2 # 1 107 3 109 109 189 84.0 7e-49 MKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLL HLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR >gi|223713587|gb|ACDM01000011.1| GENE 14 10589 - 11245 669 218 aa, chain + ## HITS:1 COG:pdxH KEGG:ns NR:ns ## COG: pdxH COG0259 # Protein_GI_number: 16129596 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxamine-phosphate oxidase # Organism: Escherichia coli K12 # 1 218 1 218 218 432 100.0 1e-121 MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDE HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAER LSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGG FRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP >gi|223713587|gb|ACDM01000011.1| GENE 15 11374 - 12648 833 424 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4 421 7 414 418 325 42 1e-88 MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKR FQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENS AIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQG YDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTE GGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQ YVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSALSEADFEQLAQDGVPMVEMEKGADLM QALVDSELQPSRGQARKTIASNAITINGEKQSDPEYFFKEEDRLFGRFTLLRRGKKNYCL ICWK >gi|223713587|gb|ACDM01000011.1| GENE 16 12710 - 13570 886 286 aa, chain + ## HITS:1 COG:pdxY KEGG:ns NR:ns ## COG: pdxY COG2240 # Protein_GI_number: 16129594 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Escherichia coli K12 # 1 286 2 287 287 568 100.0 1e-162 MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLT EIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKG CIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLV KHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQ EALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL >gi|223713587|gb|ACDM01000011.1| GENE 17 13614 - 14219 664 201 aa, chain - ## HITS:1 COG:ECs2344 KEGG:ns NR:ns ## COG: ECs2344 COG0625 # Protein_GI_number: 15831598 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1 201 1 201 201 389 100.0 1e-108 MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDG TLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEE YKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLEGLEHIAA FMQRMAERPEVQDALSAEGLK >gi|223713587|gb|ACDM01000011.1| GENE 18 14325 - 15827 1556 500 aa, chain - ## HITS:1 COG:ydgR KEGG:ns NR:ns ## COG: ydgR COG3104 # Protein_GI_number: 16129592 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1 487 1 487 500 879 100.0 0 MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA AIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVNIGSFFSMIATPWLAAKYGWS VAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIIGVVALIAIATWLLH NQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLN FFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSPILAAIYNKMGDTLPMPTKFAIGMVMC SGAFLILPLGAKFASDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM GSWFLTTAGANLIGGYVAGMMAVPDNVTDPLMSLEVYGRVFLQIGVATAVIAVLMLLTAP KLHRMTQDDAADKAAKAAVA >gi|223713587|gb|ACDM01000011.1| GENE 19 16110 - 16310 61 66 aa, chain - ## HITS:1 COG:no KEGG:ECBD_2010 NR:ns ## KEGG: ECBD_2010 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 66 1 66 66 103 100.0 2e-21 MQVNCFFNSEIFYSFVIKITMLSQCKNIARIRLKSFKFTHATNIDLQNITLAIFQKLDYL TSKNAK >gi|223713587|gb|ACDM01000011.1| GENE 20 16438 - 17073 640 211 aa, chain - ## HITS:1 COG:nth KEGG:ns NR:ns ## COG: nth COG0177 # Protein_GI_number: 16129591 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Escherichia coli K12 # 1 211 1 211 211 426 100.0 1e-119 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI LHGRYTCIARKPRCGSCIIEDLCEYKEKVDI >gi|223713587|gb|ACDM01000011.1| GENE 21 17073 - 17768 769 231 aa, chain - ## HITS:1 COG:ECs2341 KEGG:ns NR:ns ## COG: ECs2341 COG4660 # Protein_GI_number: 15831595 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Escherichia coli O157:H7 # 1 231 1 231 231 395 99.0 1e-110 MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLR HWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAA KKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTD SPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV >gi|223713587|gb|ACDM01000011.1| GENE 22 17772 - 18392 547 206 aa, chain - ## HITS:1 COG:ydgP KEGG:ns NR:ns ## COG: ydgP COG4659 # Protein_GI_number: 16129589 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Escherichia coli K12 # 1 206 1 206 206 393 100.0 1e-109 MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALA QSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTR VTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAV VNAVKRAGLYAQTLPAQLSQLPACGE >gi|223713587|gb|ACDM01000011.1| GENE 23 18396 - 19454 822 352 aa, chain - ## HITS:1 COG:ydgO KEGG:ns NR:ns ## COG: ydgO COG4658 # Protein_GI_number: 16129588 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Escherichia coli K12 # 1 352 1 352 352 633 100.0 0 MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEAL VLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP FNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGI DGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI RWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGR LIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG >gi|223713587|gb|ACDM01000011.1| GENE 24 19455 - 19694 251 79 aa, chain - ## HITS:1 COG:Z2636 KEGG:ns NR:ns ## COG: Z2636 COG4656 # Protein_GI_number: 15802043 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Escherichia coli O157:H7 EDL933 # 1 79 662 740 740 62 92.0 2e-10 AKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAA AIARAQAKKAAQQKVVNED Prediction of potential genes in microbial genomes Time: Mon May 16 18:41:37 2011 Seq name: gi|223713586|gb|ACDM01000012.1| Escherichia sp. 4_1_40B cont1.12, whole genome shotgun sequence Length of sequence - 56395 bp Number of predicted genes - 53, with homology - 51 Number of transcription units - 35, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 10/0.091 - CDS 3 - 1791 1377 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 2 1 Op 2 12/0.091 - CDS 1784 - 2362 451 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 3 1 Op 3 . - CDS 2362 - 2943 608 ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 4 1 Op 4 . - CDS 3020 - 3460 348 ## UTI89_C1816 hypothetical protein - Prom 3484 - 3543 4.1 5 2 Tu 1 . - CDS 3546 - 3761 247 ## G2583_2020 OriC-binding nucleoid-associated protein - Prom 3897 - 3956 3.7 - Term 3972 - 4019 6.9 6 3 Tu 1 . - CDS 4034 - 4189 77 ## EC55989_1792 beta-lactam resistance membrane protein + Prom 4289 - 4348 4.5 7 4 Tu 1 . + CDS 4402 - 5442 972 ## COG0673 Predicted dehydrogenases and related proteins + Term 5447 - 5484 7.1 - Term 5433 - 5470 7.1 8 5 Tu 1 . - CDS 5476 - 6477 1167 ## COG1816 Adenosine deaminase - Prom 6507 - 6566 6.5 - Term 6528 - 6578 7.1 9 6 Op 1 3/0.727 - CDS 6581 - 7753 1025 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 10 6 Op 2 . - CDS 7763 - 9355 1613 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 9450 - 9509 5.3 + Prom 9421 - 9480 7.4 11 7 Tu 1 . + CDS 9530 - 10558 784 ## COG1609 Transcriptional regulators + Prom 10591 - 10650 2.0 12 8 Tu 1 . + CDS 10670 - 11437 244 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 11577 - 11636 4.9 13 9 Tu 1 . + CDS 11661 - 12248 556 ## COG1309 Transcriptional regulator + Term 12265 - 12302 3.0 + Prom 12476 - 12535 3.6 14 10 Op 1 1/0.727 + CDS 12639 - 13919 1164 ## COG3250 Beta-galactosidase/beta-glucuronidase 15 10 Op 2 . + CDS 13816 - 14781 922 ## COG2211 Na+/melibiose symporter and related transporters 16 10 Op 3 . + CDS 14820 - 16085 943 ## JW1607 predicted outer membrane porin protein + Term 16093 - 16128 5.7 - Term 16262 - 16297 4.0 17 11 Tu 1 . - CDS 16311 - 17819 1637 ## COG5339 Uncharacterized protein conserved in bacteria - Prom 17859 - 17918 1.9 - Term 17829 - 17862 4.1 18 12 Tu 1 . - CDS 17920 - 19095 1405 ## COG1482 Phosphomannose isomerase - Prom 19138 - 19197 4.2 + Prom 19165 - 19224 5.2 19 13 Tu 1 4/0.455 + CDS 19294 - 20940 486 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Term 20944 - 20977 3.6 + Prom 20946 - 21005 2.2 20 14 Tu 1 . + CDS 21083 - 22486 1593 ## COG0114 Fumarase + Term 22498 - 22553 0.2 21 15 Op 1 . - CDS 22483 - 23412 649 ## JW1602 inhibitor of replication at Ter, DNA-binding protein 22 15 Op 2 40/0.000 - CDS 23488 - 24789 1209 ## COG0642 Signal transduction histidine kinase 23 15 Op 3 . - CDS 24793 - 25512 593 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 25710 - 25769 4.1 + Prom 25552 - 25611 5.1 24 16 Tu 1 . + CDS 25641 - 25976 355 ## COG3136 Uncharacterized membrane protein required for alginate biosynthesis 25 17 Op 1 7/0.091 - CDS 25973 - 26695 768 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 26 17 Op 2 . - CDS 26732 - 28114 1367 ## COG0531 Amino acid transporters - Prom 28192 - 28251 4.6 - Term 28251 - 28279 1.3 27 18 Tu 1 . - CDS 28300 - 29244 1065 ## EC55989_1769 hypothetical protein - Prom 29363 - 29422 5.0 + Prom 29623 - 29682 4.5 28 19 Op 1 17/0.000 + CDS 29768 - 31300 1532 ## COG3288 NAD/NADP transhydrogenase alpha subunit 29 19 Op 2 . + CDS 31311 - 32699 1432 ## COG1282 NAD/NADP transhydrogenase beta subunit + Term 32703 - 32738 7.4 30 20 Tu 1 . - CDS 32724 - 33758 1152 ## COG0628 Predicted permease - Prom 33906 - 33965 5.1 + Prom 33907 - 33966 4.5 31 21 Op 1 12/0.091 + CDS 34170 - 34535 455 ## COG2076 Membrane transporters of cations and cationic drugs 32 21 Op 2 . + CDS 34522 - 34851 453 ## COG2076 Membrane transporters of cations and cationic drugs + Term 34858 - 34893 6.4 - Term 34846 - 34881 6.4 33 22 Tu 1 . - CDS 34890 - 35711 519 ## COG3591 V8-like Glu-specific endopeptidase - Prom 35755 - 35814 3.4 34 23 Tu 1 . - CDS 35987 - 36295 284 ## - Prom 36432 - 36491 6.5 + Prom 36479 - 36538 3.6 35 24 Tu 1 . + CDS 36566 - 36670 58 ## + Term 36679 - 36726 11.2 - Term 36670 - 36711 7.3 36 25 Tu 1 . - CDS 36719 - 37972 975 ## COG0477 Permeases of the major facilitator superfamily - Prom 38040 - 38099 5.3 + Prom 37996 - 38055 4.8 37 26 Op 1 5/0.091 + CDS 38079 - 38972 204 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 + Prom 39010 - 39069 1.6 38 26 Op 2 3/0.727 + CDS 39107 - 40327 274 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Term 40369 - 40433 6.5 + Prom 40373 - 40432 4.7 39 27 Tu 1 . + CDS 40452 - 41147 814 ## COG0132 Dethiobiotin synthetase + Term 41191 - 41229 7.6 40 28 Tu 1 . - CDS 41100 - 42392 1212 ## COG0038 Chloride channel protein EriC - Prom 42482 - 42541 4.2 41 29 Op 1 4/0.455 - CDS 42551 - 43165 574 ## COG3381 Uncharacterized component of anaerobic dehydrogenases - Term 43170 - 43200 3.0 42 29 Op 2 9/0.091 - CDS 43208 - 44062 655 ## COG3302 DMSO reductase anchor subunit 43 29 Op 3 16/0.000 - CDS 44064 - 44681 514 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 44 29 Op 4 5/0.091 - CDS 44692 - 47115 1688 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 45 29 Op 5 . - CDS 47176 - 49602 1969 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 49628 - 49687 5.4 - Term 49749 - 49784 3.7 46 30 Tu 1 . - CDS 49801 - 50106 238 ## ECSE_1707 hypothetical protein - Prom 50128 - 50187 2.3 + Prom 50110 - 50169 3.4 47 31 Tu 1 . + CDS 50301 - 50924 562 ## ECBD_2061 hypothetical protein + Term 50935 - 50974 -0.7 48 32 Op 1 . - CDS 50927 - 51487 484 ## PROTEIN SUPPORTED gi|116490772|ref|YP_810316.1| acetyltransferase 49 32 Op 2 . - CDS 51522 - 51863 305 ## B21_01542 hypothetical protein - Prom 51963 - 52022 4.6 + Prom 51815 - 51874 4.6 50 33 Tu 1 . + CDS 51998 - 52324 261 ## COG1742 Uncharacterized conserved protein + Prom 52333 - 52392 4.0 51 34 Op 1 2/0.727 + CDS 52530 - 53744 1382 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 52 34 Op 2 . + CDS 53756 - 54775 1025 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 54990 - 55030 -0.0 53 35 Tu 1 . - CDS 54963 - 56243 302 ## COG0582 Integrase Predicted protein(s) >gi|223713586|gb|ACDM01000012.1| GENE 1 3 - 1791 1377 596 aa, chain - ## HITS:1 COG:ydgN KEGG:ns NR:ns ## COG: ydgN COG4656 # Protein_GI_number: 16129587 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Escherichia coli K12 # 1 588 1 588 740 1067 100.0 0 MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP RDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIA >gi|223713586|gb|ACDM01000012.1| GENE 2 1784 - 2362 451 192 aa, chain - ## HITS:1 COG:ydgM KEGG:ns NR:ns ## COG: ydgM COG2878 # Protein_GI_number: 16129586 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Escherichia coli K12 # 1 192 1 192 192 365 100.0 1e-101 MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPY AEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGC TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNT IPVRIIPVEHHA >gi|223713586|gb|ACDM01000012.1| GENE 3 2362 - 2943 608 193 aa, chain - ## HITS:1 COG:ECs2336 KEGG:ns NR:ns ## COG: ECs2336 COG4657 # Protein_GI_number: 15831590 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 285 100.0 3e-77 MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLID TWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVA LLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLM SLAFMGFSGLVKL >gi|223713586|gb|ACDM01000012.1| GENE 4 3020 - 3460 348 146 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C1816 NR:ns ## KEGG: UTI89_C1816 # Name: ydgK # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 146 9 154 154 202 99.0 2e-51 MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGV SFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLL FTLLATALIVPYFKRSSRVKATFVNP >gi|223713586|gb|ACDM01000012.1| GENE 5 3546 - 3761 247 71 aa, chain - ## HITS:1 COG:no KEGG:G2583_2020 NR:ns ## KEGG: G2583_2020 # Name: cnu # Def: OriC-binding nucleoid-associated protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 71 1 71 71 133 100.0 3e-30 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG QVPKSVWHYVQ >gi|223713586|gb|ACDM01000012.1| GENE 6 4034 - 4189 77 51 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1792 NR:ns ## KEGG: EC55989_1792 # Name: blr # Def: beta-lactam resistance membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1 51 16 66 66 92 100.0 6e-18 MDQSREMWAVMNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK >gi|223713586|gb|ACDM01000012.1| GENE 7 4402 - 5442 972 346 aa, chain + ## HITS:1 COG:ECs2332 KEGG:ns NR:ns ## COG: ECs2332 COG0673 # Protein_GI_number: 15831586 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 346 14 359 359 681 99.0 0 MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVKADWPTVTVVSEPKHLF NDPNIDLIVIPTPNDTHLPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSV FHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH LLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYP AYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA >gi|223713586|gb|ACDM01000012.1| GENE 8 5476 - 6477 1167 333 aa, chain - ## HITS:1 COG:add KEGG:ns NR:ns ## COG: add COG1816 # Protein_GI_number: 16129581 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Escherichia coli K12 # 1 333 1 333 333 655 100.0 0 MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFL TKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVI DGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLF LSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQI GIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGL SREQIRQAQINGLEMAFLSAEEKRALREKVAAK >gi|223713586|gb|ACDM01000012.1| GENE 9 6581 - 7753 1025 390 aa, chain - ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 1 390 1 390 390 822 100.0 0 MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAPCIIEALNQRLMHGVFG YSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPA YDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPAL TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLT YIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEG RGFVRLNAGCPRSKLEKGVAGLINAIRAVR >gi|223713586|gb|ACDM01000012.1| GENE 10 7763 - 9355 1613 530 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 450 1 450 450 847 100.0 0 MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQ AIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKG ILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGT RFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLG GLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLT GLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAIT RFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK DMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA >gi|223713586|gb|ACDM01000012.1| GENE 11 9530 - 10558 784 342 aa, chain + ## HITS:1 COG:malI KEGG:ns NR:ns ## COG: malI COG1609 # Protein_GI_number: 16129578 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 342 1 342 342 645 100.0 0 MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGFVRNRQASALR GGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQG VDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHLIRN GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRH NPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV TWASTPARELGITLADRMMQKITHEETHSRNLIIPARLIAAK >gi|223713586|gb|ACDM01000012.1| GENE 12 10670 - 11437 244 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 12 248 4 238 242 98 29 7e-20 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG QAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVF SFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK NIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVS GQILTVSGGGVQELN >gi|223713586|gb|ACDM01000012.1| GENE 13 11661 - 12248 556 195 aa, chain + ## HITS:1 COG:ECs2326 KEGG:ns NR:ns ## COG: ECs2326 COG1309 # Protein_GI_number: 15831580 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 195 2 196 196 359 100.0 2e-99 MDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQA IILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVAAM LKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYGVLADIEAEDLAREASF AQGLRAMIGGILTAS >gi|223713586|gb|ACDM01000012.1| GENE 14 12639 - 13919 1164 426 aa, chain + ## HITS:1 COG:uidA KEGG:ns NR:ns ## COG: uidA COG3250 # Protein_GI_number: 16129575 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1 388 1 388 603 818 99.0 0 MLRPVETPTREIKKLDGLWAFSLNRENCGIDQRWWESALQESRAIAVPGSFNDQFADADI RNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTP YVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTP NTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPH LWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDAD LRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLS LGIGFEAGNKPKELYSEEAVNGETQQAHSCYRDDPTTTIPRPSGRGSWDCHFIDLCLPGI SDRTEH >gi|223713586|gb|ACDM01000012.1| GENE 15 13816 - 14781 922 321 aa, chain + ## HITS:1 COG:uidB KEGG:ns NR:ns ## COG: uidB COG2211 # Protein_GI_number: 16129574 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1 321 137 457 457 595 99.0 1e-170 MTQQPQSRARLGAARGIATSLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVL YFICFKSTRENVVRIVAQPSLNISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVR YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA IGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKE IVVEIDNRKKVQQQLISDITN >gi|223713586|gb|ACDM01000012.1| GENE 16 14820 - 16085 943 421 aa, chain + ## HITS:1 COG:no KEGG:JW1607 NR:ns ## KEGG: JW1607 # Name: uidC # Def: predicted outer membrane porin protein # Organism: E.coli_J # Pathway: not_defined # 1 421 1 421 421 824 100.0 0 MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRADKPSAGAGRDIYAWVQ GGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGDKSFGFALGAVKIKPSENS LLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALGYWALTPNIDLWGMWRSRVFL WTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDTSRYSLGASVQKDVSNQIQSILE KSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETALVSGQLTWNAPWGSVFGSGGYLRH AMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVNYRLTPQFTLTFAPIVTRGYESSKRDV RIEGTGILGGMNYRVSEGPLQGMNFFLAADKGREKRDGSTLGDRLNYWDVKMSIQYDFML K >gi|223713586|gb|ACDM01000012.1| GENE 17 16311 - 17819 1637 502 aa, chain - ## HITS:1 COG:ydgA KEGG:ns NR:ns ## COG: ydgA COG5339 # Protein_GI_number: 16129572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 502 1 502 502 919 99.0 0 MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNY HRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQT TLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQL NADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE KMTISVEGKELALLEGMEISCKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG QIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAP LSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQV AKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLE DFVGMFAMPALNVPAVPAIPQQ >gi|223713586|gb|ACDM01000012.1| GENE 18 17920 - 19095 1405 391 aa, chain - ## HITS:1 COG:manA KEGG:ns NR:ns ## COG: manA COG1482 # Protein_GI_number: 16129571 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Escherichia coli K12 # 1 391 1 391 391 751 100.0 0 MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKSSSRVQNAAGDIVSLRD VIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMD AAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQQPDAERL SELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIRLISEFYPEDSGLFSPLLLNVVK LNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEAKPANQ LLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETTISQQSAAILFCVEGDATLWKGSQQLQ LKPGESAFIAANESPVTVKGHGRLARVYNKL >gi|223713586|gb|ACDM01000012.1| GENE 19 19294 - 20940 486 548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 76 531 38 482 508 191 33 6e-48 MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVALEALTLLARQAFHDASF MLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQR VWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKF LCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAET NLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKELLIEAQNLGLGAQFGGKYFAHDIRV IRLPRHGASCPVGMGVSCSADRNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVR VDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIY YAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGF YLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIQL TQCTRCVK >gi|223713586|gb|ACDM01000012.1| GENE 20 21083 - 22486 1593 467 aa, chain + ## HITS:1 COG:fumC KEGG:ns NR:ns ## COG: fumC COG0114 # Protein_GI_number: 16129569 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Escherichia coli K12 # 1 467 1 467 467 902 100.0 0 MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSMKAGR >gi|223713586|gb|ACDM01000012.1| GENE 21 22483 - 23412 649 309 aa, chain - ## HITS:1 COG:no KEGG:JW1602 NR:ns ## KEGG: JW1602 # Name: tus # Def: inhibitor of replication at Ter, DNA-binding protein # Organism: E.coli_J # Pathway: not_defined # 1 309 1 309 309 586 100.0 1e-166 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII PRLHLYVAD >gi|223713586|gb|ACDM01000012.1| GENE 22 23488 - 24789 1209 433 aa, chain - ## HITS:1 COG:rstB KEGG:ns NR:ns ## COG: rstB COG0642 # Protein_GI_number: 16129567 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 433 1 433 433 874 100.0 0 MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPH DWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVL AVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLN ERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL SAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDK TVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPG IAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFS WPLWHNIPQFTSA >gi|223713586|gb|ACDM01000012.1| GENE 23 24793 - 25512 593 239 aa, chain - ## HITS:1 COG:rstA KEGG:ns NR:ns ## COG: rstA COG0745 # Protein_GI_number: 16129566 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 239 4 242 242 447 100.0 1e-125 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE >gi|223713586|gb|ACDM01000012.1| GENE 24 25641 - 25976 355 111 aa, chain + ## HITS:1 COG:ECs2313 KEGG:ns NR:ns ## COG: ECs2313 COG3136 # Protein_GI_number: 15831567 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein required for alginate biosynthesis # Organism: Escherichia coli O157:H7 # 1 111 1 111 111 165 100.0 2e-41 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH >gi|223713586|gb|ACDM01000012.1| GENE 25 25973 - 26695 768 240 aa, chain - ## HITS:1 COG:ECs2312 KEGG:ns NR:ns ## COG: ECs2312 COG1028 # Protein_GI_number: 15831566 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 1 240 1 240 240 492 100.0 1e-139 MGKTQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAIDGLINAGAQCIQADFS TNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGAPLADVLACMMQIHVNTPYLLNHAL ERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPEVKVNSIA PSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVDYLLTSCFVTGRSFPLDGGRHLR >gi|223713586|gb|ACDM01000012.1| GENE 26 26732 - 28114 1367 460 aa, chain - ## HITS:1 COG:ydgI KEGG:ns NR:ns ## COG: ydgI COG0531 # Protein_GI_number: 16129563 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 460 1 460 460 781 100.0 0 MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWGITGAGILLLAFAMLIL TRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSYLVIVFSALSFFTDTPELR LFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVATLAKLLPLGLFVVLAMMMFKL DTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAVVVSARARNKRDVGKATLLAVLS ALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEMMGPWGEIIIAAGLIVSVCGAYLSW TIMAAEVPFLAATHKAFPRIFARQNAQAAPSASLWLTNICVQICLVLIWLTGSDYNTLLT IASEMILVPYFLVGAFLLKIATRPLHKAVGVGACIYGLWLLYASGPMHLLLSVVLYAPGL LVFLYARKTHTHDNVLNRQEMVLIGMLLIASVPATWMLVG >gi|223713586|gb|ACDM01000012.1| GENE 27 28300 - 29244 1065 314 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1769 NR:ns ## KEGG: EC55989_1769 # Name: ydgH # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 314 1 314 314 520 100.0 1e-146 MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRA DKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEP FDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKR IVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTV TLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQ ERGNNLTVSADLYK >gi|223713586|gb|ACDM01000012.1| GENE 28 29768 - 31300 1532 510 aa, chain + ## HITS:1 COG:ECs2309 KEGG:ns NR:ns ## COG: ECs2309 COG3288 # Protein_GI_number: 15831563 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Escherichia coli O157:H7 # 1 510 1 510 510 972 98.0 0 MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEG NSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPR ISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAA IGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME LFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEI FTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTV IRAGEITWPAPPIQVSAQPQAAQKAAPEVKTEEKCTCSPWRKYALMALAIILFGWMASVA PKEFLGHFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSF LSFIAVLIASINIFGGFTVTQRMLKMFRKN >gi|223713586|gb|ACDM01000012.1| GENE 29 31311 - 32699 1432 462 aa, chain + ## HITS:1 COG:ECs2308 KEGG:ns NR:ns ## COG: ECs2308 COG1282 # Protein_GI_number: 15831562 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase beta subunit # Organism: Escherichia coli O157:H7 # 1 462 1 462 462 850 100.0 0 MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIALIATIFGPDTGNVGWI LLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLHHDAGMAPILVNI HLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNRHKMNLAALVVSFLLLIVFVR TDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDL LIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTGDDQEVGEHREITAEETA ELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLA EAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNV IVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKAL >gi|223713586|gb|ACDM01000012.1| GENE 30 32724 - 33758 1152 344 aa, chain - ## HITS:1 COG:ydgG KEGG:ns NR:ns ## COG: ydgG COG0628 # Protein_GI_number: 16129559 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 1 344 1 344 344 493 100.0 1e-139 MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVP RVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVS VDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPV EGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIG SVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLI FWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE >gi|223713586|gb|ACDM01000012.1| GENE 31 34170 - 34535 455 121 aa, chain + ## HITS:1 COG:ECs2306 KEGG:ns NR:ns ## COG: ECs2306 COG2076 # Protein_GI_number: 15831560 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 121 1 121 121 182 100.0 2e-46 MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIALGVA YALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPELEVNHGA V >gi|223713586|gb|ACDM01000012.1| GENE 32 34522 - 34851 453 109 aa, chain + ## HITS:1 COG:ECs2305 KEGG:ns NR:ns ## COG: ECs2305 COG2076 # Protein_GI_number: 15831559 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 109 1 109 109 144 100.0 5e-35 MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGID LSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMIMVKLA >gi|223713586|gb|ACDM01000012.1| GENE 33 34890 - 35711 519 273 aa, chain - ## HITS:1 COG:ydgD KEGG:ns NR:ns ## COG: ydgD COG3591 # Protein_GI_number: 16129556 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Escherichia coli K12 # 1 273 1 273 273 519 100.0 1e-147 MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQ LETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRV DPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGR KVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGV QSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK >gi|223713586|gb|ACDM01000012.1| GENE 34 35987 - 36295 284 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAA KKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQPAKPAAQPAA >gi|223713586|gb|ACDM01000012.1| GENE 35 36566 - 36670 58 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNPFIWVLIILMTLDALRELAGASSILGWLLTLV >gi|223713586|gb|ACDM01000012.1| GENE 36 36719 - 37972 975 417 aa, chain - ## HITS:1 COG:ynfM KEGG:ns NR:ns ## COG: ynfM COG0477 # Protein_GI_number: 16129554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 417 1 417 417 726 99.0 0 MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILP VLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTM MTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLIS GVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGL PLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTR YGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKG QASSLYLFSYYLVSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA >gi|223713586|gb|ACDM01000012.1| GENE 37 38079 - 38972 204 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3 245 1 239 305 83 26 3e-15 MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLT AAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDY PDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPESLEHAVIVHEPLMAMIPHDHPLAN NPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGL GVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR >gi|223713586|gb|ACDM01000012.1| GENE 38 39107 - 40327 274 406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 146 394 63 317 323 110 28 2e-23 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG >gi|223713586|gb|ACDM01000012.1| GENE 39 40452 - 41147 814 231 aa, chain + ## HITS:1 COG:ECs2299 KEGG:ns NR:ns ## COG: ECs2299 COG0132 # Protein_GI_number: 15831553 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Escherichia coli O157:H7 # 1 231 5 235 235 444 100.0 1e-125 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQ SVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTEKVDHVVVEGTGGWRSL MNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAH YAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAMLRSVLAVDRVTV >gi|223713586|gb|ACDM01000012.1| GENE 40 41100 - 42392 1212 430 aa, chain - ## HITS:1 COG:ynfJ KEGG:ns NR:ns ## COG: ynfJ COG0038 # Protein_GI_number: 16129550 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli K12 # 1 430 9 438 438 711 99.0 0 MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNL SPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASL LVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAYRAPLAGSL FIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTG VLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPAVWGNGYSTVQSF LTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGE EITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLHRDS IYRQHTAQHS >gi|223713586|gb|ACDM01000012.1| GENE 41 42551 - 43165 574 204 aa, chain - ## HITS:1 COG:ECs2297 KEGG:ns NR:ns ## COG: ECs2297 COG3381 # Protein_GI_number: 15831551 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli O157:H7 # 1 204 4 207 207 371 100.0 1e-103 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAF QTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMK QNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGE LARLTLAQWQSQLLIPVAVKPLFR >gi|223713586|gb|ACDM01000012.1| GENE 42 43208 - 44062 655 284 aa, chain - ## HITS:1 COG:ynfH KEGG:ns NR:ns ## COG: ynfH COG3302 # Protein_GI_number: 16129548 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Escherichia coli K12 # 1 284 1 284 284 453 100.0 1e-127 MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIA SVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLF SMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTP FAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLC PLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG >gi|223713586|gb|ACDM01000012.1| GENE 43 44064 - 44681 514 205 aa, chain - ## HITS:1 COG:ECs2295 KEGG:ns NR:ns ## COG: ECs2295 COG0437 # Protein_GI_number: 15831549 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 205 1 205 205 416 100.0 1e-116 MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGVWHQNVFA YYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEK GHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPN IVIKPNANSRPTGDTTGYLANPEEV >gi|223713586|gb|ACDM01000012.1| GENE 44 44692 - 47115 1688 807 aa, chain - ## HITS:1 COG:ynfF KEGG:ns NR:ns ## COG: ynfF COG0243 # Protein_GI_number: 16129546 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 807 2 808 808 1702 100.0 0 MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVRAAEAPVEEKAVWSSCT VNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPDRLKYPMK RVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNSNVPYRL MNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDIANTKLVVMFGNNPAETRMSGGG VTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALACAIAWVLITENMVD QPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPAEKIIQLA REIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEW FPMLENPVKTQISVFTWTDAIDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHG DINHTHEVLQDDSKCEMIVGIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVI LAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPD YEEMKTTGIFKKKCPEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKD EIIHPLPAYTPGFDGWDDPLRKTYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPI DAQARGIRHGDTVRVFNNNGEMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSI NILTSHRPSPLAKGNPSHSNLVQIEKV >gi|223713586|gb|ACDM01000012.1| GENE 45 47176 - 49602 1969 808 aa, chain - ## HITS:1 COG:ynfE KEGG:ns NR:ns ## COG: ynfE COG0243 # Protein_GI_number: 16129545 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 808 1 808 808 1681 100.0 0 MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRNAAAAVQQAREKVVWGACSVNC GSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVG KRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSASAVKR LMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTDIENSKLVVMFGNNPAETRMSGG GITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLV DQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKL AREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITIE RLPVLDNPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQH SDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYL IFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALP SYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEK DEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINP IDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGC VNTLTTLRPSPLAKGNPQHTNLVEIEKI >gi|223713586|gb|ACDM01000012.1| GENE 46 49801 - 50106 238 101 aa, chain - ## HITS:1 COG:no KEGG:ECSE_1707 NR:ns ## KEGG: ECSE_1707 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 101 2 102 102 154 98.0 9e-37 MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQP DSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ >gi|223713586|gb|ACDM01000012.1| GENE 47 50301 - 50924 562 207 aa, chain + ## HITS:1 COG:no KEGG:ECBD_2061 NR:ns ## KEGG: ECBD_2061 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 207 42 248 248 406 100.0 1e-112 MASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVA LVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDD QGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVD CQLIIVDEGVKPAVERVYTIKNTIDYY >gi|223713586|gb|ACDM01000012.1| GENE 48 50927 - 51487 484 186 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116490772|ref|YP_810316.1| acetyltransferase [Oenococcus oeni PSU-1] # 7 168 3 164 167 191 54 1e-47 MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRF VVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKL YLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAIRMCIFQHQYLAEHKTPGQTL LKPTAQ >gi|223713586|gb|ACDM01000012.1| GENE 49 51522 - 51863 305 113 aa, chain - ## HITS:1 COG:no KEGG:B21_01542 NR:ns ## KEGG: B21_01542 # Name: ynfB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 113 1 113 113 204 100.0 8e-52 MKITLSKRIGLLAILLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNL RQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP >gi|223713586|gb|ACDM01000012.1| GENE 50 51998 - 52324 261 108 aa, chain + ## HITS:1 COG:ynfA KEGG:ns NR:ns ## COG: ynfA COG1742 # Protein_GI_number: 16129540 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 108 1 108 108 164 100.0 3e-41 MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLALFVWLLTLHPAASGRVY AAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIVAGWGRT >gi|223713586|gb|ACDM01000012.1| GENE 51 52530 - 53744 1382 404 aa, chain + ## HITS:1 COG:rspA KEGG:ns NR:ns ## COG: rspA COG4948 # Protein_GI_number: 16129539 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 404 1 404 404 862 99.0 0 MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLQDHLCPQLIGRDA HRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVY CHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEE QLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDP TPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI ADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFD NGYMHPGDKPGLGIEFDEKPAAKYPYEPAYLPFARLEDGTLWNW >gi|223713586|gb|ACDM01000012.1| GENE 52 53756 - 54775 1025 339 aa, chain + ## HITS:1 COG:rspB KEGG:ns NR:ns ## COG: rspB COG1063 # Protein_GI_number: 16129538 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 339 1 339 339 682 100.0 0 MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE FFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEY AVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVL KGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPS ILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGL IKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE >gi|223713586|gb|ACDM01000012.1| GENE 53 54963 - 56243 302 426 aa, chain - ## HITS:1 COG:intQ KEGG:ns NR:ns ## COG: intQ COG0582 # Protein_GI_number: 16129537 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 31 426 2 398 398 790 97.0 0 MKYPTGVENHGGKLRIWFVYKDVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVFDYA KQFPSSRNLEKFGEARQDLTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEKNL ASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLA DNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQAKNLWCVSVYTGVRPGELCALGWE DIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDV HLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRH TYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVALLNTQLSEFAPTMPH NEAMKN Prediction of potential genes in microbial genomes Time: Mon May 16 18:42:34 2011 Seq name: gi|223713585|gb|ACDM01000013.1| Escherichia sp. 4_1_40B cont1.13, whole genome shotgun sequence Length of sequence - 66316 bp Number of predicted genes - 64, with homology - 62 Number of transcription units - 38, operones - 15 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 58 - 83 -0.5 1 1 Tu 1 . - CDS 149 - 319 60 ## - Prom 370 - 429 8.6 + Prom 377 - 436 6.6 2 2 Op 1 . + CDS 548 - 754 295 ## ECUMN_1843 putative S lysis protein; Qin prophage 3 2 Op 2 . + CDS 759 - 1070 349 ## JW1547 hypothetical protein 4 3 Op 1 . + CDS 1184 - 1600 281 ## COG3772 Phage-related lysozyme (muraminidase) 5 3 Op 2 . + CDS 1612 - 2094 278 ## ECUMN_1840 conserved hypothetical protein; Qin prophage 6 4 Tu 1 . + CDS 2457 - 2669 347 ## COG1278 Cold shock proteins + Term 2873 - 2906 2.2 + Prom 2767 - 2826 6.6 7 5 Tu 1 . + CDS 2941 - 3171 65 ## ECUMN_1838 hypothetical protein + Prom 3177 - 3236 6.6 8 6 Tu 1 . + CDS 3343 - 3516 269 ## ECS88_5024 hypothetical protein + Term 3540 - 3580 4.0 9 7 Tu 1 . - CDS 3668 - 4078 71 ## COG5562 Phage envelope protein - Prom 4104 - 4163 3.1 + Prom 4613 - 4672 5.9 10 8 Tu 1 . + CDS 4758 - 5303 343 ## COG4220 Phage DNA packaging protein, Nu1 subunit of terminase 11 9 Op 1 . + CDS 5554 - 5862 142 ## EcolC_2111 prophage tail fibre domain-containing protein 12 9 Op 2 . + CDS 5862 - 6437 346 ## COG5525 Bacteriophage tail assembly protein 13 10 Tu 1 . - CDS 6535 - 7125 289 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 14 11 Tu 1 . - CDS 7442 - 7675 242 ## ECBD_2095 uncharacterized protein YdfK - Prom 7736 - 7795 3.8 + Prom 8339 - 8398 2.1 15 12 Op 1 3/0.636 + CDS 8461 - 9744 1434 ## COG0477 Permeases of the major facilitator superfamily + Term 9753 - 9788 4.2 + Prom 9754 - 9813 3.1 16 12 Op 2 . + CDS 9833 - 11293 1267 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Term 11286 - 11321 5.2 17 13 Tu 1 . - CDS 11328 - 11531 373 ## ECIAI1_1560 putative selenium carrying protein - Prom 11573 - 11632 1.5 - Term 11664 - 11699 5.8 18 14 Op 1 5/0.273 - CDS 11708 - 12394 731 ## COG1802 Transcriptional regulators - Prom 12420 - 12479 5.5 - Term 12442 - 12478 3.0 19 14 Op 2 . - CDS 12483 - 13229 860 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 20 15 Tu 1 . + CDS 13375 - 15411 1832 ## COG0339 Zn-dependent oligopeptidases - Term 15403 - 15454 0.6 21 16 Tu 1 . - CDS 15455 - 15973 232 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 16184 - 16243 10.1 + Prom 16126 - 16185 9.6 22 17 Tu 1 . + CDS 16249 - 16641 281 ## COG3111 Uncharacterized conserved protein + Term 16653 - 16694 6.2 + Prom 16809 - 16868 6.9 23 18 Tu 1 . + CDS 16896 - 17786 525 ## COG2199 FOG: GGDEF domain + Term 17904 - 17934 2.1 - Term 17934 - 17977 10.4 24 19 Op 1 . - CDS 18005 - 18100 86 ## - Prom 18160 - 18219 3.0 25 19 Op 2 . - CDS 18227 - 19414 911 ## COG0477 Permeases of the major facilitator superfamily - Prom 19480 - 19539 3.7 + Prom 19393 - 19452 4.7 26 20 Tu 1 . + CDS 19609 - 20508 889 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 20499 - 20529 3.0 27 21 Op 1 . - CDS 20539 - 20757 128 ## B21_01502 hypothetical protein 28 21 Op 2 3/0.636 - CDS 20789 - 21172 296 ## COG2207 AraC-type DNA-binding domain-containing proteins 29 21 Op 3 . - CDS 21192 - 21626 442 ## COG1846 Transcriptional regulators - Prom 21654 - 21713 7.1 + Prom 21746 - 21805 5.2 30 22 Tu 1 . + CDS 21838 - 22503 665 ## COG2095 Multiple antibiotic transporter + Term 22508 - 22533 -0.5 - Term 22492 - 22525 3.8 31 23 Tu 1 . - CDS 22528 - 23718 900 ## COG2814 Arabinose efflux permease - Prom 23751 - 23810 6.6 32 24 Tu 1 . - CDS 23868 - 24575 282 ## JW1520 hypothetical protein - Prom 24731 - 24790 4.8 33 25 Tu 1 . - CDS 25061 - 25942 802 ## COG0583 Transcriptional regulator - Prom 25975 - 26034 3.8 + Prom 25960 - 26019 2.4 34 26 Op 1 3/0.636 + CDS 26043 - 27431 1440 ## COG1012 NAD-dependent aldehyde dehydrogenases 35 26 Op 2 . + CDS 27507 - 28421 627 ## COG2066 Glutaminase 36 26 Op 3 . + CDS 28421 - 28780 226 ## B21_01491 hypothetical protein + Prom 28803 - 28862 2.0 37 27 Tu 1 . + CDS 28949 - 29839 707 ## COG2199 FOG: GGDEF domain + Prom 29841 - 29900 3.5 38 28 Tu 1 . + CDS 30066 - 31517 1702 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 31534 - 31567 3.8 + Prom 31548 - 31607 4.1 39 29 Tu 1 . + CDS 31724 - 32638 663 ## COG3781 Predicted membrane protein 40 30 Op 1 3/0.636 - CDS 32642 - 33400 596 ## COG4106 Trans-aconitate methyltransferase 41 30 Op 2 5/0.273 - CDS 33457 - 33747 371 ## COG1359 Uncharacterized conserved protein 42 30 Op 3 6/0.273 - CDS 33771 - 34646 890 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 43 30 Op 4 16/0.000 - CDS 34673 - 35695 1102 ## COG1879 ABC-type sugar transport system, periplasmic component 44 30 Op 5 11/0.000 - CDS 35707 - 36699 1052 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 45 30 Op 6 21/0.000 - CDS 36699 - 37727 1016 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 46 30 Op 7 . - CDS 37721 - 39256 178 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 39494 - 39553 4.9 + Prom 39322 - 39381 6.2 47 31 Op 1 5/0.273 + CDS 39505 - 40458 859 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 48 31 Op 2 . + CDS 40537 - 41544 679 ## COG1070 Sugar (pentulose and hexulose) kinases 49 31 Op 3 1/0.818 + CDS 41504 - 45454 3206 ## COG3468 Type V secretory pathway, adhesin AidA + Term 45464 - 45500 7.1 + Prom 45585 - 45644 5.9 50 32 Op 1 8/0.182 + CDS 45677 - 45943 255 ## COG1396 Predicted transcriptional regulators 51 32 Op 2 . + CDS 45943 - 47265 602 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes + Prom 47940 - 47999 5.6 52 33 Op 1 6/0.273 + CDS 48118 - 49266 561 ## COG3188 P pilus assembly protein, porin PapC 53 33 Op 2 4/0.545 + CDS 49280 - 49810 331 ## COG3539 P pilus assembly protein, pilin FimA 54 33 Op 3 . + CDS 49823 - 50326 247 ## COG3539 P pilus assembly protein, pilin FimA 55 33 Op 4 . + CDS 50385 - 51299 378 ## B21_01472 hypothetical protein + Prom 51378 - 51437 9.9 56 34 Tu 1 . + CDS 51633 - 53912 1320 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing + Term 53926 - 53968 8.0 + Prom 53976 - 54035 5.2 57 35 Op 1 . + CDS 54160 - 54357 143 ## S1655 hypothetical protein 58 35 Op 2 2/0.727 + CDS 54432 - 55193 348 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 55241 - 55277 3.0 + Prom 55349 - 55408 5.0 59 36 Op 1 4/0.545 + CDS 55595 - 57277 1363 ## COG3119 Arylsulfatase A and related enzymes + Term 57290 - 57322 5.0 60 36 Op 2 1/0.818 + CDS 57329 - 58486 417 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) + Term 58539 - 58578 5.0 + Prom 58645 - 58704 7.4 61 37 Op 1 . + CDS 58870 - 60462 922 ## COG4178 ABC-type uncharacterized transport system, permease and ATPase components 62 37 Op 2 . + CDS 60500 - 62872 1940 ## JW1490 predicted porin protein + Term 62892 - 62921 -0.5 63 37 Op 3 3/0.636 + CDS 62929 - 65712 1795 ## COG0612 Predicted Zn-dependent peptidases + Term 65719 - 65755 6.3 + Prom 65867 - 65926 6.7 64 38 Tu 1 . + CDS 66074 - 66314 180 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins Predicted protein(s) >gi|223713585|gb|ACDM01000013.1| GENE 1 149 - 319 60 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSERKNSKSRRNYLVKCSCPNCTQESEHSFSRVQKGALLICPHCNKVFQTNLKAVA >gi|223713585|gb|ACDM01000013.1| GENE 2 548 - 754 295 68 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1843 NR:ns ## KEGG: ECUMN_1843 # Name: essQ # Def: putative S lysis protein; Qin prophage # Organism: E.coli_UMN026 # Pathway: not_defined # 1 68 4 71 71 125 100.0 6e-28 MDKLTTGVAYGTSAGNAGFWALQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKED RRKAARGE >gi|223713585|gb|ACDM01000013.1| GENE 3 759 - 1070 349 103 aa, chain + ## HITS:1 COG:no KEGG:JW1547 NR:ns ## KEGG: JW1547 # Name: ydfR # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 103 1 103 103 176 100.0 3e-43 MTQDYELVVKGVRNFENKVTVTVALQDKERFDGEIFDLDVAMDRVEGAALEFYEAAARRS VRQVFLEVAEKLSEKVESYLQHQYSFKIENPANKHERPHHKYL >gi|223713585|gb|ACDM01000013.1| GENE 4 1184 - 1600 281 138 aa, chain + ## HITS:1 COG:ydfQ KEGG:ns NR:ns ## COG: ydfQ COG3772 # Protein_GI_number: 16129513 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Escherichia coli K12 # 1 138 40 177 177 286 100.0 7e-78 MAYRDGSGIWTICRGATVVDGKTVFPNMKLSKEKCDQVNAIERDKALAWVERNIKVPLTE PQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYG QVIRRDQESALTCWGIEQ >gi|223713585|gb|ACDM01000013.1| GENE 5 1612 - 2094 278 160 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1840 NR:ns ## KEGG: ECUMN_1840 # Name: ydfP # Def: conserved hypothetical protein; Qin prophage # Organism: E.coli_UMN026 # Pathway: not_defined # 1 160 6 165 165 259 100.0 2e-68 MVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKD AQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAAAVRGKTTKTAEGMLTN MLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRDKKHQM >gi|223713585|gb|ACDM01000013.1| GENE 6 2457 - 2669 347 70 aa, chain + ## HITS:1 COG:cspI KEGG:ns NR:ns ## COG: cspI COG1278 # Protein_GI_number: 16129511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli K12 # 1 70 1 70 70 134 100.0 5e-32 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK GPAAVHVVAL >gi|223713585|gb|ACDM01000013.1| GENE 7 2941 - 3171 65 76 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1838 NR:ns ## KEGG: ECUMN_1838 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 76 15 90 90 142 100.0 4e-33 MKKIIVFFNSEPAVVVPAMTGVNTIMREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADR HVTSEEILEAAIRLLS >gi|223713585|gb|ACDM01000013.1| GENE 8 3343 - 3516 269 57 aa, chain + ## HITS:1 COG:no KEGG:ECS88_5024 NR:ns ## KEGG: ECS88_5024 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 57 32 88 88 78 92.0 8e-14 MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI >gi|223713585|gb|ACDM01000013.1| GENE 9 3668 - 4078 71 136 aa, chain - ## HITS:1 COG:ydfO KEGG:ns NR:ns ## COG: ydfO COG5562 # Protein_GI_number: 16129508 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1 136 6 141 141 236 100.0 8e-63 MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLK NIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS LLFTESIQKTTQILPR >gi|223713585|gb|ACDM01000013.1| GENE 10 4758 - 5303 343 181 aa, chain + ## HITS:1 COG:nohA KEGG:ns NR:ns ## COG: nohA COG4220 # Protein_GI_number: 16129507 # Func_class: L Replication, recombination and repair # Function: Phage DNA packaging protein, Nu1 subunit of terminase # Organism: Escherichia coli K12 # 1 181 1 181 189 309 95.0 1e-84 MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENE KLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSR IAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELITGRTLTVTRAA R >gi|223713585|gb|ACDM01000013.1| GENE 11 5554 - 5862 142 102 aa, chain + ## HITS:1 COG:no KEGG:EcolC_2111 NR:ns ## KEGG: EcolC_2111 # Name: not_defined # Def: prophage tail fibre domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 2 102 907 1007 1007 121 98.0 9e-27 MGTAGAHTHSMTFVSGGSSGAPGSGSPDYSKYSVNTSSAGAHTHSVSGTAASAGAHAHTV GIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA >gi|223713585|gb|ACDM01000013.1| GENE 12 5862 - 6437 346 191 aa, chain + ## HITS:1 COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 50 191 103 244 247 267 94.0 7e-72 MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNS DEASWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPGGEYQKWNGTAWVKDTEA EKLFRIREAEETKNSLMQIASEHIAPLQDAVDLEIATEEETLLLEAWKKYRVLLNRVDTS TAPDIEWPALP >gi|223713585|gb|ACDM01000013.1| GENE 13 6535 - 7125 289 196 aa, chain - ## HITS:1 COG:pinR KEGG:ns NR:ns ## COG: pinR COG1961 # Protein_GI_number: 16129335 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli K12 # 1 196 1 196 196 359 99.0 2e-99 MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARL KCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMHVISAV AEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVVFERIKSGVSISAIAREFKTS RQTILRAKAKLQTPDI >gi|223713585|gb|ACDM01000013.1| GENE 14 7442 - 7675 242 77 aa, chain - ## HITS:1 COG:no KEGG:ECBD_2095 NR:ns ## KEGG: ECBD_2095 # Name: not_defined # Def: uncharacterized protein YdfK # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 77 1 77 77 138 100.0 6e-32 MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELL QTAISVLKDNQNLNGKM >gi|223713585|gb|ACDM01000013.1| GENE 15 8461 - 9744 1434 427 aa, chain + ## HITS:1 COG:ydfJ KEGG:ns NR:ns ## COG: ydfJ COG0477 # Protein_GI_number: 16129502 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 427 1 427 427 788 100.0 0 MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKK VLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAP KGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWL RMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYL VQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSII VDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGF GPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRA AQPSRSL >gi|223713585|gb|ACDM01000013.1| GENE 16 9833 - 11293 1267 486 aa, chain + ## HITS:1 COG:ydfI KEGG:ns NR:ns ## COG: ydfI COG0246 # Protein_GI_number: 16129501 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1 486 1 486 486 987 99.0 0 MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLI GGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIV SLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVM SCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQL TGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLA YLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALR HRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISD PLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATV AKYSVK >gi|223713585|gb|ACDM01000013.1| GENE 17 11328 - 11531 373 67 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_1560 NR:ns ## KEGG: ECIAI1_1560 # Name: ydfZ # Def: putative selenium carrying protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 67 1 67 67 114 100.0 1e-24 MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLD LIRLGMN >gi|223713585|gb|ACDM01000013.1| GENE 18 11708 - 12394 731 228 aa, chain - ## HITS:1 COG:ECs2149 KEGG:ns NR:ns ## COG: ECs2149 COG1802 # Protein_GI_number: 15831403 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 228 1 228 228 414 100.0 1e-116 MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLA ENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQ RIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEML LRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE >gi|223713585|gb|ACDM01000013.1| GENE 19 12483 - 13229 860 248 aa, chain - ## HITS:1 COG:ydfG KEGG:ns NR:ns ## COG: ydfG COG4221 # Protein_GI_number: 16129498 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Escherichia coli K12 # 1 248 1 248 248 504 100.0 1e-143 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAA IEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPG MVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLV GGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSY AGLNVHRQ >gi|223713585|gb|ACDM01000013.1| GENE 20 13375 - 15411 1832 678 aa, chain + ## HITS:1 COG:dcp KEGG:ns NR:ns ## COG: dcp COG0339 # Protein_GI_number: 16129497 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Escherichia coli K12 # 1 678 4 681 681 1328 100.0 0 MNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALE QSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQRR ESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSG GLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWLIPLLNTTQQPALAEMRDRATREKLF IAGWTRAEKNDANDTRAIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMRE IVPAARQRASDELASIQAVIDKQQGGFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELN TVLNEGVFWTANQLFGIKFVERFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARDSKSG GAWMGNFVEQSTLNKTHPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQ RYATLSGTNTPRDFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFN KGYEMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHI FGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQW RGKAPKIMPMLQHRGLNI >gi|223713585|gb|ACDM01000013.1| GENE 21 15455 - 15973 232 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 18 172 747 902 904 94 36 2e-18 MNINRDKIVQLVDTDTIENLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFY GAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGPE GGEDGTPAGTVWFAWHIKGQNYTAVMHFAGDCETVLALAVRFALAQLLQLLL >gi|223713585|gb|ACDM01000013.1| GENE 22 16249 - 16641 281 130 aa, chain + ## HITS:1 COG:ydeI KEGG:ns NR:ns ## COG: ydeI COG3111 # Protein_GI_number: 16129495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 130 1 130 130 246 100.0 9e-66 MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHD GASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAP AVVRVTHLQK >gi|223713585|gb|ACDM01000013.1| GENE 23 16896 - 17786 525 296 aa, chain + ## HITS:1 COG:ydeH_2 KEGG:ns NR:ns ## COG: ydeH_2 COG2199 # Protein_GI_number: 16129494 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 121 296 1 176 176 362 100.0 1e-100 MIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYGLCQFGRWIDH LGPLDNDELPYVRLMDSAHQHMHNCGRELMLAIVENHWQDAHFDAFQEGLLSFTAALTDY KIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLI GDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITH SEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRV >gi|223713585|gb|ACDM01000013.1| GENE 24 18005 - 18100 86 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD >gi|223713585|gb|ACDM01000013.1| GENE 25 18227 - 19414 911 395 aa, chain - ## HITS:1 COG:ydeF KEGG:ns NR:ns ## COG: ydeF COG0477 # Protein_GI_number: 16129493 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 395 1 395 395 663 99.0 0 MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAW FADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQI WVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLL WGMSAAVFTVGEIIYAPGEYMLIDHIAPPEMKASYFSAQSLGWLGAAINPLVSGVVLTSL PPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC >gi|223713585|gb|ACDM01000013.1| GENE 26 19609 - 20508 889 299 aa, chain + ## HITS:1 COG:ECs2140 KEGG:ns NR:ns ## COG: ECs2140 COG0697 # Protein_GI_number: 15831394 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 297 1 297 299 459 96.0 1e-129 MSRKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNL LLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIMLGAFTFGERLHGKQLAGI ALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVIW SALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMTGLYINVFGLRWRKAVKVGS >gi|223713585|gb|ACDM01000013.1| GENE 27 20539 - 20757 128 72 aa, chain - ## HITS:1 COG:no KEGG:B21_01502 NR:ns ## KEGG: B21_01502 # Name: marB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 72 1 72 72 122 100.0 3e-27 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD ALGVPYYNQHAM >gi|223713585|gb|ACDM01000013.1| GENE 28 20789 - 21172 296 127 aa, chain - ## HITS:1 COG:ECs2138 KEGG:ns NR:ns ## COG: ECs2138 COG2207 # Protein_GI_number: 15831392 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 127 3 129 129 233 100.0 9e-62 MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS RKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLH PLNHYNS >gi|223713585|gb|ACDM01000013.1| GENE 29 21192 - 21626 442 144 aa, chain - ## HITS:1 COG:STM1520 KEGG:ns NR:ns ## COG: STM1520 COG1846 # Protein_GI_number: 16764865 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 144 1 144 144 259 92.0 8e-70 MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVEL KKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLH QELTKNLTADEVATLEYLLKKVLP >gi|223713585|gb|ACDM01000013.1| GENE 30 21838 - 22503 665 221 aa, chain + ## HITS:1 COG:marC KEGG:ns NR:ns ## COG: marC COG2095 # Protein_GI_number: 16129488 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli K12 # 1 221 1 221 221 366 100.0 1e-101 MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQSLMASVYVFAIMMVAYY AGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSPEAKSKSEELEDEPSANIA FVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAPPLIFFLVAVILWGSLRSSGA IMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIKTYH >gi|223713585|gb|ACDM01000013.1| GENE 31 22528 - 23718 900 396 aa, chain - ## HITS:1 COG:ydeA KEGG:ns NR:ns ## COG: ydeA COG2814 # Protein_GI_number: 16129487 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 396 1 396 396 572 100.0 1e-163 MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGIMLTIYAWV VALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFTVLVISRIGVAFAHAIFWS ITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIVGQYFGWRMTFFAIGIGALIT LLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA GFSANFATALLLLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPAANSEIH LGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHW SMSMIGYVGAVPAFAALIWSIIIFRRWPVTLEEQTQ >gi|223713585|gb|ACDM01000013.1| GENE 32 23868 - 24575 282 235 aa, chain - ## HITS:1 COG:no KEGG:JW1520 NR:ns ## KEGG: JW1520 # Name: yneK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 235 137 371 371 455 100.0 1e-127 MGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDL LVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGS NKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSD DKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH >gi|223713585|gb|ACDM01000013.1| GENE 33 25061 - 25942 802 293 aa, chain - ## HITS:1 COG:yneJ KEGG:ns NR:ns ## COG: yneJ COG0583 # Protein_GI_number: 16129485 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 293 1 293 293 592 100.0 1e-169 MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPA GHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQF SLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQV NGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE SMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ >gi|223713585|gb|ACDM01000013.1| GENE 34 26043 - 27431 1440 462 aa, chain + ## HITS:1 COG:yneI KEGG:ns NR:ns ## COG: yneI COG1012 # Protein_GI_number: 16129484 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 462 9 470 470 893 100.0 0 MTITPATHAISINPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAEKLRDI GKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEHGPAMLKAEPTLVENQQA VIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLKHAPNVMGCAQLIAQVFKDAG IPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDP FIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDP RDEENALGPMARFDLRDELHHQVEKTLAQGARLLLGGEKMAGAGNYYPPTVLANVTPEMT AFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFIN GYCASDARVAFGGVKKSGFGRELSHFGLHEFCNIQTVWKDRI >gi|223713585|gb|ACDM01000013.1| GENE 35 27507 - 28421 627 304 aa, chain + ## HITS:1 COG:ECs2131 KEGG:ns NR:ns ## COG: ECs2131 COG2066 # Protein_GI_number: 15831385 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Escherichia coli O157:H7 # 1 304 5 308 308 612 100.0 1e-175 MDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIAICTVDGQLFQAGDAQERFSI QSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLVQLEMEQGIPRNPFINAGALVVC DMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARSEFEHSARNAAIAWLMKSFGNFHHD VTTVLQNYFHYCALKMSCVELARTFVFLANQGKAIHIDEPVVTPMQARQINALMATSGMY QNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAIAVWSPELDDAGNSLAGIAVLEQLTKQLG RSVY >gi|223713585|gb|ACDM01000013.1| GENE 36 28421 - 28780 226 119 aa, chain + ## HITS:1 COG:no KEGG:B21_01491 NR:ns ## KEGG: B21_01491 # Name: yneG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 119 1 119 119 239 100.0 3e-62 MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAADFVAKRLAPALPANDGK QTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQRYIVAVIYHWLVVQMNQP >gi|223713585|gb|ACDM01000013.1| GENE 37 28949 - 29839 707 296 aa, chain + ## HITS:1 COG:yneF_2 KEGG:ns NR:ns ## COG: yneF_2 COG2199 # Protein_GI_number: 16129481 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 112 296 1 185 185 381 100.0 1e-105 MLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTC LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV >gi|223713585|gb|ACDM01000013.1| GENE 38 30066 - 31517 1702 483 aa, chain + ## HITS:1 COG:ECs2128 KEGG:ns NR:ns ## COG: ECs2128 COG0246 # Protein_GI_number: 15831382 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 483 1 483 483 996 100.0 0 MKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDLNSGVVVVRPIETSFPP SLSTQDGLYTTIIRGLNEKGEAVSDARLIRSVNREISVYSEYDEFLKLAHNPEMRFVFSN TTEAGISYHAGDKFDDAPAVSYPAKLTRLLFERFSHFNGALDKGWIIIPCELIDYNGDAL RELVLRYAQEWALPEAFIQWLDQANSFCSTLVDRIVTGYPRDEVAKLEEELGYHDGFLDT AEHFYLFVIQGPKSLATELRLDKYPLNVLIVDDIKPYKERKVAILNGAHTALVPVAFQAG LDTVGEAMNDAEICAFVEKAIYEEIIPVLDLPRDELESFASAVTGRFRNPYIKHQLLSIA LNGMTKFRTRILPQLLAGQKANGTLPARLTFALAALIAFYRGERNGETYPVQDDAHWLER YQQLWSQHRDRVIGTQELVAIVLAEKDHWEQDLTQVPGLVEQVANDLDAILEKGMREAVR PLC >gi|223713585|gb|ACDM01000013.1| GENE 39 31724 - 32638 663 304 aa, chain + ## HITS:1 COG:yneE KEGG:ns NR:ns ## COG: yneE COG3781 # Protein_GI_number: 16129479 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 304 18 321 321 597 100.0 1e-170 MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSIL GVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAF AHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDIL FISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI SVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKILPDRH YQLT >gi|223713585|gb|ACDM01000013.1| GENE 40 32642 - 33400 596 252 aa, chain - ## HITS:1 COG:tam KEGG:ns NR:ns ## COG: tam COG4106 # Protein_GI_number: 16129478 # Func_class: R General function prediction only # Function: Trans-aconitate methyltransferase # Organism: Escherichia coli K12 # 1 252 1 252 252 493 99.0 1e-139 MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITG IDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLL NPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWR TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLRENGQILLA FPRLFIVARRME >gi|223713585|gb|ACDM01000013.1| GENE 41 33457 - 33747 371 96 aa, chain - ## HITS:1 COG:ECs2125 KEGG:ns NR:ns ## COG: ECs2125 COG1359 # Protein_GI_number: 15831379 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 96 1 96 96 188 100.0 2e-48 MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYKDED AVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP >gi|223713585|gb|ACDM01000013.1| GENE 42 33771 - 34646 890 291 aa, chain - ## HITS:1 COG:yneB KEGG:ns NR:ns ## COG: yneB COG1830 # Protein_GI_number: 16129476 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli K12 # 1 291 1 291 291 597 100.0 1e-171 MADLDDIKDGKDFRTDQPQKNIPFTLKGCGALDWGMQSRLSRIFNPKTGKTVMLAFDHGY FQGPTTGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNRPVVLRASGANSILAELSN EAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDM VRDQRYFSLATRIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPEREALEMCW QAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSEKQ >gi|223713585|gb|ACDM01000013.1| GENE 43 34673 - 35695 1102 340 aa, chain - ## HITS:1 COG:yneA KEGG:ns NR:ns ## COG: yneA COG1879 # Protein_GI_number: 16129475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 340 1 340 340 647 100.0 0 MTLHRFKKIALLSALGIAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDV TYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTK PECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAK EHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKV AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVG QVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF >gi|223713585|gb|ACDM01000013.1| GENE 44 35707 - 36699 1052 330 aa, chain - ## HITS:1 COG:ydeZ KEGG:ns NR:ns ## COG: ydeZ COG1172 # Protein_GI_number: 16129474 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1 330 1 330 330 511 100.0 1e-145 MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGG IDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITL GTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLW LHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDL GASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGAL LIVVVVGRSVSLHRQQIKEWLARRANNPLP >gi|223713585|gb|ACDM01000013.1| GENE 45 36699 - 37727 1016 342 aa, chain - ## HITS:1 COG:ydeY KEGG:ns NR:ns ## COG: ydeY COG1172 # Protein_GI_number: 16129473 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1 342 1 342 342 541 100.0 1e-153 MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLT RNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVA TLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKT AFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAV LVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA >gi|223713585|gb|ACDM01000013.1| GENE 46 37721 - 39256 178 511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 268 481 1 217 245 73 26 4e-12 MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGI TPADSGTLEIEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQK MKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLF SRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAV REKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTGEGFRNVSLTLNAGEILGLAGLVGA GRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAW NVCALTHNLRGFWAKTAKDNATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEA SPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELMADRVYVMHQGE ITHSALTERDINVETIMRVAFGDSQRQEASC >gi|223713585|gb|ACDM01000013.1| GENE 47 39505 - 40458 859 317 aa, chain + ## HITS:1 COG:ydeW KEGG:ns NR:ns ## COG: ydeW COG2390 # Protein_GI_number: 16129471 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Escherichia coli K12 # 1 317 1 317 317 588 100.0 1e-168 MTINDSAISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRLLEKGHQSGII RVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIGAAHMLMSLLQPQQML AIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGIGQLNAACSVNIIPAPLRASS ADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDDATIIRSGYISQGEQLMIGRKGA VGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGY INALVTDQDTAAAILRS >gi|223713585|gb|ACDM01000013.1| GENE 48 40537 - 41544 679 335 aa, chain + ## HITS:1 COG:ydeV KEGG:ns NR:ns ## COG: ydeV COG1070 # Protein_GI_number: 16129470 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 329 1 329 530 670 99.0 0 MARLFTLSESKYYLMALDAGTGSIRAVIFDLEGNQIAVGQAEWRHLAVPDVPGSMEFDLN KNWQLACECMRQALHNAGIAPEYIAAVSACSMREGIVLYNNEGAPIWACANVDARAAREV SELKELHNNTFENEVYRATGQTLALSAIPRLLWLAHHRSDIYRQASTITMISDWLAYMLS GELAVDPSNAGTTGLLDLTTRDWKPALLDMAGLRADILSPVKETGTLLGVVSSQAAELCG LKAGTPVVVGGGDVQLGCLGLGVVRPAQTAVLGGTFWQQVVNLAAPVTDPEMNVRVNPHV IPGMVQAESISFFTGLTMRWFRDAFCAEDCGYQCR >gi|223713585|gb|ACDM01000013.1| GENE 49 41504 - 45454 3206 1316 aa, chain + ## HITS:1 COG:ydeU KEGG:ns NR:ns ## COG: ydeU COG3468 # Protein_GI_number: 16129468 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 851 1316 1 466 466 845 99.0 0 MLSVPKTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNISTDSLWNLKTSS TNAQLLQVGVLGTGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLLETFNMYVGTS GTGTLTLTNNGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGFITNATKVEFGLGE GVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTLVNDGLLTIAS HTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQLSSSDKMFGFT HATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSIGGLAMNGGTI IFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKPWNDPMANNPL TTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQNGTVVAEGDY GFRLTTAPGNGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGGEGDLAINTVR QVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGSTQTVETFTGQM GSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTSISPNAEVSLD NTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNSRFVGQFNIDT GSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGILTLNNDSAAY QGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDMNVMPGGALRVAKTTIG GNLENGGTVQMNSEGGKPGNVLTVNGNYTGNNGLMTFNATLGGDNSPTDKMNVKGDTQGN TRVRVDNIGGVGAQTVNGIELIEVGGNSAGNFALTTGTVEAGAYVYTLAKGKGNDEKNWY LTSKWDGVTPADTPDPINNPPVVDPEGPSVYRPEAGSYISNIAAANSLFSHRLHDRLGEP QYTDSLHSQGSASSMWMRHVGGHERSRAGDGQLNTQANRYVLQLGGDLAQWSSNAQDRWH LGVMAGYANQHSNTQSNRVGYKSDGRISGYSAGLYATWYQNDANKTGAYVDSWALYNWFD NSVSSDNRSADDYDSRGVTASVEGGYTFEAGTFSGSEGTLNTWYVQPQAQITWMGVKDSD HTRKDGTRIETEGDGNVQTRLGVKTYLNSHHQRDDGKQREFQPYIEANWINNSKVYAVKM NGQTVGREGARNLGEVRTGVEAKVNNNLSLWGNVGVQLGDKGYSDTQGMLEVKYSW >gi|223713585|gb|ACDM01000013.1| GENE 50 45677 - 45943 255 88 aa, chain + ## HITS:1 COG:hipB KEGG:ns NR:ns ## COG: hipB COG1396 # Protein_GI_number: 16129467 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 88 1 88 88 139 100.0 1e-33 MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKI LQSLELSMTLCDAKNASPESTEQQNLEW >gi|223713585|gb|ACDM01000013.1| GENE 51 45943 - 47265 602 440 aa, chain + ## HITS:1 COG:hipA KEGG:ns NR:ns ## COG: hipA COG3550 # Protein_GI_number: 16129466 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Escherichia coli K12 # 1 440 1 440 440 911 100.0 0 MPKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNF FDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKL TEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHII KLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRW NAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQV FQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASK GKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVT AVESNVLRLHGRLSREYGSK >gi|223713585|gb|ACDM01000013.1| GENE 52 48118 - 49266 561 382 aa, chain + ## HITS:1 COG:Z2203 KEGG:ns NR:ns ## COG: Z2203 COG3188 # Protein_GI_number: 15801633 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 EDL933 # 1 382 502 883 883 723 98.0 0 MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRN SNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGA YGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHSAIARATFNAQIGG KVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCI VEYKLPEVSPGTLLNQQTAICR >gi|223713585|gb|ACDM01000013.1| GENE 53 49280 - 49810 331 176 aa, chain + ## HITS:1 COG:ydeS KEGG:ns NR:ns ## COG: ydeS COG3539 # Protein_GI_number: 16129463 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 176 1 176 176 338 100.0 2e-93 MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDA NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ >gi|223713585|gb|ACDM01000013.1| GENE 54 49823 - 50326 247 167 aa, chain + ## HITS:1 COG:ydeR KEGG:ns NR:ns ## COG: ydeR COG3539 # Protein_GI_number: 16129462 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 167 1 167 167 308 100.0 3e-84 MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALK NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ >gi|223713585|gb|ACDM01000013.1| GENE 55 50385 - 51299 378 304 aa, chain + ## HITS:1 COG:no KEGG:B21_01472 NR:ns ## KEGG: B21_01472 # Name: ydeQ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 304 1 304 304 573 100.0 1e-162 MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDL SQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGD KTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLGSGNPRNFTWNIISNNNVVM PTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVT FIYE >gi|223713585|gb|ACDM01000013.1| GENE 56 51633 - 53912 1320 759 aa, chain + ## HITS:1 COG:ydeP KEGG:ns NR:ns ## COG: ydeP COG0243 # Protein_GI_number: 16129460 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 759 1 759 759 1566 100.0 0 MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKPEGFDCPGCAWPDPKHS ASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHELEAAGRLTQPLKYDAVSD CYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSN MCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKM IAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDA ASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEWKDIERISGLSQTQIAELADAYAAAER TIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNVQGDRTVGITEKP SAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPL TQLDLAVHVATKLNRSHLLTARHSYILPVLGRSEIDMQKNGAQAVTVEDSMSMIHASRGV LKPAGVMLKSECAVVAGIAQAALPQSVVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRH PGGFHLINAAAERRWMTPSGKANFITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGM DDRYRGVFGQRDVVFMSAKQAKICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMAD RSLVTYFPESNHMLTLDNHDPLSGIPGYKSIPVELEPSN >gi|223713585|gb|ACDM01000013.1| GENE 57 54160 - 54357 143 65 aa, chain + ## HITS:1 COG:no KEGG:S1655 NR:ns ## KEGG: S1655 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 64 1 64 67 87 98.0 2e-16 MHATTVKNKITQRDNYKEIMSAIVVVLLLTLTLIAIFSAIDQLSISEMGRIARDLTHFII NSLQG >gi|223713585|gb|ACDM01000013.1| GENE 58 54432 - 55193 348 253 aa, chain + ## HITS:1 COG:ydeO KEGG:ns NR:ns ## COG: ydeO COG2207 # Protein_GI_number: 16129458 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 253 1 253 253 507 99.0 1e-144 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA CKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT GMNTGNTMNALAI >gi|223713585|gb|ACDM01000013.1| GENE 59 55595 - 57277 1363 560 aa, chain + ## HITS:1 COG:ydeN KEGG:ns NR:ns ## COG: ydeN COG3119 # Protein_GI_number: 16129457 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1 560 12 571 571 1090 100.0 0 MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNI IVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGV RFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAA VGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPS LFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQ FNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQ KGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVS LLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQ FSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPP LSEVNQEKFNNIKKALSEAK >gi|223713585|gb|ACDM01000013.1| GENE 60 57329 - 58486 417 385 aa, chain + ## HITS:1 COG:ydeM KEGG:ns NR:ns ## COG: ydeM COG0641 # Protein_GI_number: 16129456 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1 385 6 390 390 799 100.0 0 MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQG GEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGP QELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGS KHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIR QFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMN SVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMN AMVELAKNRVPLYHIMDVAKQMENN >gi|223713585|gb|ACDM01000013.1| GENE 61 58870 - 60462 922 530 aa, chain + ## HITS:1 COG:yddA KEGG:ns NR:ns ## COG: yddA COG4178 # Protein_GI_number: 16129455 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease and ATPase components # Organism: Escherichia coli K12 # 13 530 44 561 561 1024 100.0 0 MLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVN KTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKT LSLSFGFIQSLSMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHK VGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRL MNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYK YDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVS PGKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKA LPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWIFLD ETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL >gi|223713585|gb|ACDM01000013.1| GENE 62 60500 - 62872 1940 790 aa, chain + ## HITS:1 COG:no KEGG:JW1490 NR:ns ## KEGG: JW1490 # Name: yddB # Def: predicted porin protein # Organism: E.coli_J # Pathway: not_defined # 1 790 1 790 790 1519 99.0 0 MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHGIWYTELSCT YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN QSESYVINAAGKKTNHTIYHKGKGRLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN HNISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK THSFSLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY KQYVDEKLDSSLTWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGR TFWLDVSMKF >gi|223713585|gb|ACDM01000013.1| GENE 63 62929 - 65712 1795 927 aa, chain + ## HITS:1 COG:pqqL KEGG:ns NR:ns ## COG: pqqL COG0612 # Protein_GI_number: 16129453 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Escherichia coli K12 # 1 927 5 931 931 1696 99.0 0 MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQI HTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMGLRFGRDVNAYTSYDETVY QVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVITEEWRAHQDAKWRTSQARRP FLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNNMTFIVVGDIDSKEALALIKD NLSKLPANKAAENRVWPTKAENHLRFNIINDKENRVNGIALYYRLPMVQVNDEQSFIEQA EWSMLVQLFNQRLQERIQSGELKTISGGTARSVKIAPDYQSLFFRVNARDDNMQDAANAL MAELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAERDLRMLTSRLASSSLNNTPFLSP EETYQLSKRLWQQITVQSLAEKWQQLRKNQDAFWEQMVNNEVAAKKALSPAAILALEKEY ANKKLAAYVFPGRNLSLTVDADPQAEISSKETLAENLTSLTLSNGARVILAKSAGEEQKL QIIAVSNKGDLSFPAQQKSLIALANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMN TLLSVSARTNNPEPGFQLINQRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMY ETRYADDRTKLLQENQIAQFTAADALAADRQLFSSPADITFVIVGNVAEDKLVALITRYL GSIKHSDSPLAAGKPLTRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLPTRMALDAF NVALAKDLRVNIREQASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMV KRLAKGISEQELNEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQM TVENVNTAVKQYLSHPVNTYTGVLLPK >gi|223713585|gb|ACDM01000013.1| GENE 64 66074 - 66314 180 80 aa, chain + ## HITS:1 COG:ECs2098 KEGG:ns NR:ns ## COG: ECs2098 COG0076 # Protein_GI_number: 15831352 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1 80 1 80 466 170 100.0 5e-43 MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNL ATFCQTWDDENVHKLMDLSI Prediction of potential genes in microbial genomes Time: Mon May 16 18:43:32 2011 Seq name: gi|223713584|gb|ACDM01000014.1| Escherichia sp. 4_1_40B cont1.14, whole genome shotgun sequence Length of sequence - 37755 bp Number of predicted genes - 32, with homology - 32 Number of transcription units - 15, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 65 - 124 1.7 1 1 Op 1 . + CDS 182 - 1717 1624 ## COG0531 Amino acid transporters + Term 1743 - 1777 5.2 + Prom 1751 - 1810 1.9 2 1 Op 2 . + CDS 2013 - 3167 819 ## COG1649 Uncharacterized protein conserved in bacteria + Term 3185 - 3233 13.1 + Prom 3318 - 3377 6.3 3 2 Op 1 5/0.000 + CDS 3531 - 4913 1216 ## COG2199 FOG: GGDEF domain 4 2 Op 2 1/1.000 + CDS 4938 - 7337 2101 ## COG2202 FOG: PAS/PAC domain + Term 7351 - 7376 -0.5 + Prom 7363 - 7422 1.6 5 3 Op 1 3/0.500 + CDS 7595 - 8176 380 ## COG2173 D-alanyl-D-alanine dipeptidase 6 3 Op 2 38/0.000 + CDS 8190 - 9740 1557 ## COG0747 ABC-type dipeptide transport system, periplasmic component 7 3 Op 3 49/0.000 + CDS 9742 - 10764 316 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 8 3 Op 4 44/0.000 + CDS 10764 - 11657 829 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 9 3 Op 5 17/0.000 + CDS 11654 - 12640 474 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 10 3 Op 6 . + CDS 12633 - 13559 618 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 13560 - 13599 6.5 11 4 Tu 1 . - CDS 13615 - 14046 526 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 14258 - 14317 7.1 + Prom 14215 - 14274 5.1 12 5 Op 1 . + CDS 14391 - 14606 302 ## B21_01451 hypothetical protein 13 5 Op 2 . + CDS 14708 - 14845 230 ## PROTEIN SUPPORTED gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22 + Term 14868 - 14919 8.4 + Prom 14860 - 14919 4.3 14 6 Tu 1 . + CDS 15002 - 16699 1918 ## COG0281 Malic enzyme + Term 16706 - 16741 6.5 + Prom 16713 - 16772 4.0 15 7 Tu 1 . + CDS 16833 - 17843 1022 ## COG1064 Zn-dependent alcohol dehydrogenases 16 8 Tu 1 . + CDS 17989 - 18273 314 ## COG3093 Plasmid maintenance system antidote protein - Term 18617 - 18660 9.3 17 9 Op 1 12/0.000 - CDS 18680 - 19333 919 ## COG2864 Cytochrome b subunit of formate dehydrogenase 18 9 Op 2 16/0.000 - CDS 19326 - 20210 995 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 19 9 Op 3 5/0.000 - CDS 20223 - 22634 2709 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 20 9 Op 4 . - CDS 22683 - 23270 541 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 23456 - 23515 6.2 + Prom 23271 - 23330 4.2 21 10 Tu 1 . + CDS 23502 - 24383 725 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 24545 - 24604 5.0 22 11 Op 1 2/0.833 + CDS 24643 - 24933 422 ## COG3203 Outer membrane protein (porin) 23 11 Op 2 2/0.833 + CDS 24993 - 25913 215 ## COG4886 Leucine-rich repeat (LRR) protein 24 12 Op 1 10/0.000 + CDS 26611 - 27999 1003 ## COG2223 Nitrate/nitrite transporter 25 12 Op 2 13/0.000 + CDS 28081 - 31821 4013 ## COG5013 Nitrate reductase alpha subunit 26 12 Op 3 12/0.000 + CDS 31818 - 33362 1454 ## COG1140 Nitrate reductase beta subunit 27 12 Op 4 12/0.000 + CDS 33362 - 34057 821 ## COG2180 Nitrate reductase delta subunit 28 12 Op 5 4/0.167 + CDS 34054 - 34734 507 ## COG2181 Nitrate reductase gamma subunit 29 12 Op 6 . + CDS 34813 - 35706 866 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 30 13 Tu 1 . - CDS 35802 - 36647 685 ## COG2162 Arylamine N-acetyltransferase - Prom 36761 - 36820 3.3 + Prom 36586 - 36645 2.7 31 14 Tu 1 . + CDS 36820 - 37389 424 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family + Term 37552 - 37578 -1.0 32 15 Tu 1 . - CDS 37386 - 37619 185 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 37642 - 37701 4.0 Predicted protein(s) >gi|223713584|gb|ACDM01000014.1| GENE 1 182 - 1717 1624 511 aa, chain + ## HITS:1 COG:xasA KEGG:ns NR:ns ## COG: xasA COG0531 # Protein_GI_number: 16129451 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 511 1 511 511 895 100.0 0 MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLC AAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW PALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH SGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLG VLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTG GGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLE PINSQNAPKGHFFLHPRARSPHYIVMNDKKH >gi|223713584|gb|ACDM01000014.1| GENE 2 2013 - 3167 819 384 aa, chain + ## HITS:1 COG:ECs2096 KEGG:ns NR:ns ## COG: ECs2096 COG1649 # Protein_GI_number: 15831350 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 384 56 439 439 759 99.0 0 MRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGT ALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPSTIR ELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFD DYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSP AGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLA KWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTIL FREDYLNKPQTQQAVSYLQSRWGS >gi|223713584|gb|ACDM01000014.1| GENE 3 3531 - 4913 1216 460 aa, chain + ## HITS:1 COG:ECs2095_2 KEGG:ns NR:ns ## COG: ECs2095_2 COG2199 # Protein_GI_number: 15831349 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli O157:H7 # 269 460 1 192 192 367 100.0 1e-101 MEMYFKRMKDEWTGLVEQADPPIRAKAAEIAVAHAHYLSIEFYRIVRIDPHAEEFLSNEQ VERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIGIPVEIVEMGFRVLKKILY PVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDSSASKEDENYRIFSLLENAEE EKERQIASILSWEIDIIYKILLDSDLGSSLPLSQADFGLWFNHKGRHYFSGIAEVGHISR LIQDFDGIFNQTMRNTRNLNNRSLRVKFLLQIRNTVSQIITLLRELFEEVSRHEVGMDVL TKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAF YDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIALSLSI GAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWKASL >gi|223713584|gb|ACDM01000014.1| GENE 4 4938 - 7337 2101 799 aa, chain + ## HITS:1 COG:ECs2094_1 KEGG:ns NR:ns ## COG: ECs2094_1 COG2202 # Protein_GI_number: 15831348 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Escherichia coli O157:H7 # 1 342 1 342 342 705 99.0 0 MKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML IPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLA LVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEASGMQ PDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQN LVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGEIICRNIESVLNESHVSLFALRNGM PIHWASSSHGAEIQNAQSWSATIRQRDGAPAGILQIKTSSGAETSAFIERVADISQHMAA LALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSPVVYLIGVDHIQDVIDS LGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVVSK PIMIDDKPFPLTLSIGISYDLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKE RLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEE IGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGID GHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKID KSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSR PLPAEEIPGWMSSVLPLKI >gi|223713584|gb|ACDM01000014.1| GENE 5 7595 - 8176 380 193 aa, chain + ## HITS:1 COG:ddpX KEGG:ns NR:ns ## COG: ddpX COG2173 # Protein_GI_number: 16129447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Escherichia coli K12 # 1 193 1 193 193 395 100.0 1e-110 MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLS GLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGTAIDLTLRDEHGNILDMGA GFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSEWWHFELPQAASYPLLADQ FSCFISPGTQHVS >gi|223713584|gb|ACDM01000014.1| GENE 6 8190 - 9740 1557 516 aa, chain + ## HITS:1 COG:ddpA KEGG:ns NR:ns ## COG: ddpA COG0747 # Protein_GI_number: 16129446 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 516 1 516 516 1014 100.0 0 MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPS YQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSF ERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHA ADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRL QLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISW STDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTF LYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADP YMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAY VYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK >gi|223713584|gb|ACDM01000014.1| GENE 7 9742 - 10764 316 340 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 70 332 46 310 320 126 29 2e-28 MTFWSILRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAGDRASDAIVENIRQQLGLD QPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGI LSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHV TGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTAR ASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQAL DFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRIGRGGGE >gi|223713584|gb|ACDM01000014.1| GENE 8 10764 - 11657 829 297 aa, chain + ## HITS:1 COG:ddpC KEGG:ns NR:ns ## COG: ddpC COG1173 # Protein_GI_number: 16129444 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1 297 2 298 298 540 100.0 1e-153 MLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAI DLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVL GGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALV VRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQ PSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS >gi|223713584|gb|ACDM01000014.1| GENE 9 11654 - 12640 474 328 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 20 316 33 324 329 187 37 1e-46 MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLP TGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIR HHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIA DEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGV TADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQC ENVPALTACGDNNQRCACWYPQQEVISV >gi|223713584|gb|ACDM01000014.1| GENE 10 12633 - 13559 618 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 291 8 310 329 242 40 2e-63 MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQ LLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRA LAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ ILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTR LLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGR ELRCWRAL >gi|223713584|gb|ACDM01000014.1| GENE 11 13615 - 14046 526 143 aa, chain - ## HITS:1 COG:osmC KEGG:ns NR:ns ## COG: osmC COG1764 # Protein_GI_number: 16129441 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli K12 # 1 143 1 143 143 270 100.0 5e-73 MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACF SMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQK AKAGCPVSQVLKAEITLDYQLKS >gi|223713584|gb|ACDM01000014.1| GENE 12 14391 - 14606 302 71 aa, chain + ## HITS:1 COG:no KEGG:B21_01451 NR:ns ## KEGG: B21_01451 # Name: bdm # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 71 1 71 71 129 100.0 4e-29 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI NYVVSGQHPTL >gi|223713584|gb|ACDM01000014.1| GENE 13 14708 - 14845 230 45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22 [Escherichia coli O157:H7 EDL933] # 1 45 1 45 45 93 100 2e-18 MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAEK >gi|223713584|gb|ACDM01000014.1| GENE 14 15002 - 16699 1918 565 aa, chain + ## HITS:1 COG:sfcA KEGG:ns NR:ns ## COG: sfcA COG0281 # Protein_GI_number: 16129438 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1 565 10 574 574 1142 100.0 0 MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERA WIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYR RSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYT ACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPD VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVF LGAGSAGCGIAEMIISQTQREGLSEEAARQKVFMVDRFGLLTDKMPNLLPFQTKLVQKRE NLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPT SRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGAS RITDEMLMSASETLAQYSPLVLNGEGMVLPELKDIQKVSRAIAFAVGKMAQQQGVAVKTS AEALQQAIDDNFWQAEYRDYRRTSI >gi|223713584|gb|ACDM01000014.1| GENE 15 16833 - 17843 1022 336 aa, chain + ## HITS:1 COG:adhP KEGG:ns NR:ns ## COG: adhP COG1064 # Protein_GI_number: 16129437 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1 336 11 346 346 609 100.0 1e-174 MKAAVVTKDHHVDVTYKTLRSLKHGEALLKMECCGVCHTDLHVKNGDFGDKTGVILGHEG IGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLCRSVKNAGYSVDGGMAEE CIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKLSKIRPGQWIAIYGLGGLGNLALQY AKNVFNAKVIAIDVNDEQLKLATEMGADLAINSHTEDAAKIVQEKTGGAHAAVVTAVAKA AFNSAVDAVRAGGRVVAVGLPPESMSLDIPRLVLDGIEVVGSLVGTRQDLTEAFQFAAEG KVVPKVALRPLADINTIFTEMEEGKIRGRMVIDFRH >gi|223713584|gb|ACDM01000014.1| GENE 16 17989 - 18273 314 94 aa, chain + ## HITS:1 COG:yddM KEGG:ns NR:ns ## COG: yddM COG3093 # Protein_GI_number: 16129436 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Escherichia coli K12 # 1 94 27 120 120 169 100.0 1e-42 MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI GSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ >gi|223713584|gb|ACDM01000014.1| GENE 17 18680 - 19333 919 217 aa, chain - ## HITS:1 COG:STM1568 KEGG:ns NR:ns ## COG: STM1568 COG2864 # Protein_GI_number: 16764912 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 217 1 217 218 408 98.0 1e-114 MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFF GIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSI MSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSI KGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI >gi|223713584|gb|ACDM01000014.1| GENE 18 19326 - 20210 995 294 aa, chain - ## HITS:1 COG:fdnH KEGG:ns NR:ns ## COG: fdnH COG0437 # Protein_GI_number: 16129434 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 294 1 294 294 612 100.0 1e-175 MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKACQVACSEWNDIRDEVG HCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQ YANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCP TGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEGVGGTHVMYVLHHADQPELYHGL PKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHYIGIGPNKEVDDDEEDHHE >gi|223713584|gb|ACDM01000014.1| GENE 19 20223 - 22634 2709 803 aa, chain - ## HITS:1 COG:fdnG KEGG:ns NR:ns ## COG: fdnG COG0243 # Protein_GI_number: 16129433 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 803 213 1015 1015 1677 99.0 0 MTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIY APIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQ YDKSSWNYQFDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCE VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ GLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSF YGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSC LSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRW LQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDE VAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMAN RDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPD FGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVV RLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIAQPEQFVEISETLAAAKGI NNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHWGFEGVARKGYIANTLT PNVGDANSQTPEYKAFLVNIEKA >gi|223713584|gb|ACDM01000014.1| GENE 20 22683 - 23270 541 195 aa, chain - ## HITS:1 COG:fdnG KEGG:ns NR:ns ## COG: fdnG COG0243 # Protein_GI_number: 16129433 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 195 1 195 1015 412 100.0 1e-115 MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAKEIRNTCTYCSVGCGLL MYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGSDK WQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKF ARSLGMLAVDNQARV >gi|223713584|gb|ACDM01000014.1| GENE 21 23502 - 24383 725 293 aa, chain + ## HITS:1 COG:yddG KEGG:ns NR:ns ## COG: yddG COG0697 # Protein_GI_number: 16129432 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 293 1 293 293 506 100.0 1e-143 MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQI PKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNW LIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYA RGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHG NVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG >gi|223713584|gb|ACDM01000014.1| GENE 22 24643 - 24933 422 96 aa, chain + ## HITS:1 COG:yddL KEGG:ns NR:ns ## COG: yddL COG3203 # Protein_GI_number: 16129431 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 96 1 96 96 173 100.0 8e-44 MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL >gi|223713584|gb|ACDM01000014.1| GENE 23 24993 - 25913 215 306 aa, chain + ## HITS:1 COG:yddK_2 KEGG:ns NR:ns ## COG: yddK_2 COG4886 # Protein_GI_number: 16129430 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Escherichia coli K12 # 81 306 1 226 226 331 99.0 1e-90 MKTITLNDHHIAHLNAKNTTKLEYLNLSNNNLLPTNDIDQLISSKHLWHVLVNGINNDPL AQMQYWTAVRNIIDDTNEVTIDLSGLNLTTQPPGLQNFTSINLDNNQLTHFDATNYDRLV KLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQLES CEWLQYLNLSHNQLTDIVAGNKNELLLLDLSHNKLTSLHNDLFPNLNTLLINNNLLSEIK IFYSNFCNVQTLNAANNQLKYINLDFLTYLPSIKSLRLDNNKITHIDTNNTSDIGTLFPI IKQSKT >gi|223713584|gb|ACDM01000014.1| GENE 24 26611 - 27999 1003 462 aa, chain + ## HITS:1 COG:narU KEGG:ns NR:ns ## COG: narU COG2223 # Protein_GI_number: 16129428 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Escherichia coli K12 # 1 462 1 462 462 781 100.0 0 MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNL NKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA VQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGA IARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAG LGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAHKEAVTETAAALGFISAIGAVGGFFIPQ AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRKFSQK >gi|223713584|gb|ACDM01000014.1| GENE 25 28081 - 31821 4013 1246 aa, chain + ## HITS:1 COG:narZ KEGG:ns NR:ns ## COG: narZ COG5013 # Protein_GI_number: 16129427 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Escherichia coli K12 # 1 1246 1 1246 1246 2613 100.0 0 MSKLLDRFRYFKQKGETFADGHGQVMHSNRDWEDSYRQRWQFDKIVRSTHGVNCTGSCSW KIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRKRLIE LWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIRSNWQELNQLIAAANVWTIKT YGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLPPASPMTWGEQTDVPE SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTIAITPDYSEVAKLCDQWLAPKQ GTDSALAMAMGHVILKEFHLDNPSDYFINYCRRYSDMPMLVMLEPRDDGSYVPGRMIRAS DLVDGLGESNNPQWKTVAVNTAGELVVPNGSIGFRWGEKGKWNLESIAAGTETELSLTLL GQHDAVAGVAFPYFGGIENPHFRSVKHNPVLVRQLPVKNLTLVDGNTCPVVSVYDLVLAN YGLDRGLEDENSAKDYAEIKPYTPAWGEQITGVPRQYIETIAREFADTAHKTHGRSMIIL GAGVNHWYHMDMNYRGMINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNR PPRQMNSTSFFYNHSSQWRYEKVSAQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQ LGRNPLGIKAEADKAGLSPTEFTAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSS GKGHEYMQKYLLGTESGIQGEELGASDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCL FSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQVCVGH LGKETDVVLQPLLHDSPAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFT SLGPLMDKLGNGGKGISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAP ETNGHVAVKAWQALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHV SYNAGYTNVHELIPWRTLSGRQQLYQDHPWMRAFGESLVAYRPPIDTRSVSEMRQIPPNG FPEKALNFLTPHQKWGIHSTYSENLLMLTLSRGGPIVWISETDARELTIVDNDWVEVFNA NGALTARAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGG YAQLAWGFNYYGTVGSNRDEFIMIRKMKNVNWLDDEGRDQVQEAKK >gi|223713584|gb|ACDM01000014.1| GENE 26 31818 - 33362 1454 514 aa, chain + ## HITS:1 COG:narY KEGG:ns NR:ns ## COG: narY COG1140 # Protein_GI_number: 16129426 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Escherichia coli K12 # 1 514 1 514 514 1100 100.0 0 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNVETKPGIGYPKNWEDQE EWQGGWVRDVNGKIRPRLGNKMGVITKIFANPVVPQIDDYYEPFTFDYEHLHSAPEGKHI PTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNFEAMQKEMYGQFENTFMMYLP RLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKS EKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDADRIEEAASTEREVDLYERQCEVFL DPHDPSVIEEALKQGIPQNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSP IQSYADAGGLPKSEGVLPAIESLRIPVQYLANMLSAGDTGPVLRALKRMMAMRHYMRSQT VEGVTDTRAIDEVGLSVAQVEEMYRYLAIANYEDRFVIPTSHREMAGDAFAERNGCGFTF GDGCHGSDSKFNLFNSSRIDAINITEVRDKAEGE >gi|223713584|gb|ACDM01000014.1| GENE 27 33362 - 34057 821 231 aa, chain + ## HITS:1 COG:narW KEGG:ns NR:ns ## COG: narW COG2180 # Protein_GI_number: 16129425 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Escherichia coli K12 # 1 231 1 231 231 443 100.0 1e-124 MQILKVIGLLMEYPDELLWECKEDALALIRRDAPMLTDFTHNLLNAPLLDKQAEWCEVFD RGRTTSLLLFEHVHAESRDRGQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDD QAKEGLLNVAPILALLGGRLKQREAPWYALFDALLQLAGSSLSSDSVTKQVNSEERDDTR QALDAVWEEEQVKFIEDNATACDSSPLNQYQRRFSQDVAPQYVDISAGGGK >gi|223713584|gb|ACDM01000014.1| GENE 28 34054 - 34734 507 226 aa, chain + ## HITS:1 COG:ECs2068 KEGG:ns NR:ns ## COG: ECs2068 COG2181 # Protein_GI_number: 15831322 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Escherichia coli O157:H7 # 1 226 1 226 226 420 100.0 1e-117 MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGI LGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVR ATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNG VAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR >gi|223713584|gb|ACDM01000014.1| GENE 29 34813 - 35706 866 297 aa, chain + ## HITS:1 COG:yddE KEGG:ns NR:ns ## COG: yddE COG0384 # Protein_GI_number: 16129423 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Escherichia coli K12 # 1 297 1 297 297 607 100.0 1e-174 MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRI RYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQ GTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPD LNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHN VLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL >gi|223713584|gb|ACDM01000014.1| GENE 30 35802 - 36647 685 281 aa, chain - ## HITS:1 COG:nhoA KEGG:ns NR:ns ## COG: nhoA COG2162 # Protein_GI_number: 16129422 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Escherichia coli K12 # 1 281 1 281 281 566 100.0 1e-161 MTPILNHYFARINWSGAAAVNIDTLRALHLKHNCTIPFENLDVLLPREIQLDNQSPEEKL VIARRGGYCFEQNGVFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELEEEKWI ADVGFGGQTLTAPIRLVSDLVQTTPHGEYRLLQEGDDWVLQFNHHQHWQSMYRFDLCEQQ QSDYVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTHYENGHAVEQRNLPDVA SLYAVMQEQFGLGVDDAKHGFTVDELALVMAAFDTHPEAGK >gi|223713584|gb|ACDM01000014.1| GENE 31 36820 - 37389 424 189 aa, chain + ## HITS:1 COG:yddH KEGG:ns NR:ns ## COG: yddH COG1853 # Protein_GI_number: 16129421 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 1 189 17 205 205 394 100.0 1e-110 MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKST WTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEK CLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFV TSGKRVTAG >gi|223713584|gb|ACDM01000014.1| GENE 32 37386 - 37619 185 77 aa, chain - ## HITS:1 COG:ZydcE KEGG:ns NR:ns ## COG: ZydcE COG1942 # Protein_GI_number: 15801678 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Escherichia coli O157:H7 EDL933 # 1 75 14 88 88 134 100.0 3e-32 MPHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWDAEI APQMEALIKKPGYSMNA Prediction of potential genes in microbial genomes Time: Mon May 16 18:43:38 2011 Seq name: gi|223713583|gb|ACDM01000015.1| Escherichia sp. 4_1_40B cont1.15, whole genome shotgun sequence Length of sequence - 2777 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 561 - 1307 413 ## COG5433 Transposase - Prom 1342 - 1401 6.2 - Term 1369 - 1410 7.6 2 2 Tu 1 . - CDS 1489 - 1722 102 ## B21_01427 hypothetical protein - Prom 1795 - 1854 7.8 3 3 Tu 1 . - CDS 1955 - 2770 238 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713583|gb|ACDM01000015.1| GENE 1 561 - 1307 413 248 aa, chain - ## HITS:1 COG:b1458 KEGG:ns NR:ns ## COG: b1458 COG5433 # Protein_GI_number: 16129417 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Escherichia coli K12 # 1 248 1 248 248 469 100.0 1e-132 MSIQSLLDYISVTPDIRQQGKVKHKLSAILFLTVCAVIAGADEWQEIEDFGHERLEWLKK YGDFDNGIPVDDTIARVVSNIDSLAFEKMFIEWMQECHEITDGEIIAIDGKTIRGSFDKG KRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLYLKKNLITIDAMGCQKDI ASKIKDKKADYLLAVKGNQGKLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIV SNVTPELL >gi|223713583|gb|ACDM01000015.1| GENE 2 1489 - 1722 102 77 aa, chain - ## HITS:1 COG:no KEGG:B21_01427 NR:ns ## KEGG: B21_01427 # Name: ydcD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 77 84 160 160 107 98.0 1e-22 MVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDY YDNNLKNEVFDWIGKWS >gi|223713583|gb|ACDM01000015.1| GENE 3 1955 - 2770 238 271 aa, chain - ## HITS:1 COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 271 412 682 682 570 99.0 1e-162 MEQLARQVEPEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHL HQPYRLPGQQHDEESGLYYNRHRHYDPLQGRYITPDPIGLRGGWNMYQYPLNPIQVIDPM GLDAIENMTSGGLIYAVSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNGAADAMRHCYL MCRMTKTFGSTIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGIACGDFSAKCSDACIE KYNTGQLFGLDGIKADNPIKAKQGSSDASNY Prediction of potential genes in microbial genomes Time: Mon May 16 18:44:36 2011 Seq name: gi|223713582|gb|ACDM01000016.1| Escherichia sp. 4_1_40B cont1.16, whole genome shotgun sequence Length of sequence - 180030 bp Number of predicted genes - 169, with homology - 168 Number of transcription units - 97, operones - 32 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.513 - CDS 2 - 389 337 ## COG3209 Rhs family protein 2 1 Op 2 . - CDS 462 - 1232 733 ## COG3501 Uncharacterized protein conserved in bacteria 3 2 Op 1 . - CDS 2052 - 2264 93 ## B21_01423 hypothetical protein 4 2 Op 2 . - CDS 2340 - 2957 459 ## COG0625 Glutathione S-transferase - Prom 2994 - 3053 4.4 + Prom 3052 - 3111 3.8 5 3 Tu 1 . + CDS 3224 - 4723 1566 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 4861 - 4905 1.0 - Term 4720 - 4754 6.8 6 4 Tu 1 . - CDS 4836 - 5897 1326 ## COG3391 Uncharacterized conserved protein - Prom 6053 - 6112 5.5 + Prom 6051 - 6110 3.9 7 5 Tu 1 . + CDS 6139 - 8241 1469 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Term 8248 - 8287 5.1 - Term 8157 - 8194 0.3 8 6 Tu 1 . - CDS 8277 - 8942 607 ## COG1802 Transcriptional regulators - Prom 9070 - 9129 5.5 - Term 9001 - 9035 0.5 9 7 Tu 1 . - CDS 9140 - 10177 995 ## COG2130 Putative NADP-dependent oxidoreductases - Prom 10332 - 10391 2.7 + Prom 10268 - 10327 2.3 10 8 Op 1 4/0.333 + CDS 10358 - 10876 497 ## COG1247 Sortase and related acyltransferases 11 8 Op 2 . + CDS 10873 - 11322 416 ## COG3238 Uncharacterized protein conserved in bacteria 12 9 Op 1 . - CDS 11323 - 11556 372 ## G2583_1807 hypothetical protein 13 9 Op 2 . - CDS 11642 - 11890 149 ## EC55989_1578 conserved hypothetical protein; putative inner membrane protein - Prom 11967 - 12026 3.1 14 10 Op 1 5/0.179 - CDS 12202 - 13626 1351 ## COG1012 NAD-dependent aldehyde dehydrogenases 15 10 Op 2 36/0.000 - CDS 13648 - 14442 728 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 16 10 Op 3 30/0.000 - CDS 14432 - 15373 1070 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 17 10 Op 4 13/0.000 - CDS 15374 - 16387 893 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 18 10 Op 5 3/0.513 - CDS 16405 - 17550 1200 ## COG0687 Spermidine/putrescine-binding periplasmic protein - Prom 17692 - 17751 4.5 19 11 Op 1 2/0.718 - CDS 17795 - 19201 1089 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 20 11 Op 2 . - CDS 19280 - 19717 375 ## COG1598 Uncharacterized conserved protein + Prom 19941 - 20000 4.2 21 12 Tu 1 . + CDS 20200 - 20370 196 ## JW1432 hypothetical protein 22 13 Op 1 3/0.513 - CDS 20462 - 22423 1700 ## COG0826 Collagenase and related proteases - Term 22435 - 22465 1.1 23 13 Op 2 . - CDS 22496 - 23032 322 ## COG1396 Predicted transcriptional regulators 24 14 Tu 1 . + CDS 23124 - 24299 851 ## COG3135 Uncharacterized protein involved in benzoate metabolism + Term 24338 - 24368 1.6 25 15 Tu 1 . - CDS 24339 - 25487 157 ## COG0675 Transposase and inactivated derivatives - Prom 25548 - 25607 5.3 + Prom 25504 - 25563 3.1 26 16 Tu 1 . + CDS 25618 - 25842 70 ## COG1943 Transposase and inactivated derivatives + Term 25871 - 25920 5.0 - Term 26039 - 26070 4.1 27 17 Tu 1 . - CDS 26079 - 26747 699 ## EC55989_1562 putative lipoprotein - Prom 26832 - 26891 4.5 - Term 26830 - 26889 9.7 28 18 Op 1 4/0.333 - CDS 27049 - 27642 612 ## COG0500 SAM-dependent methyltransferases 29 18 Op 2 . - CDS 27639 - 28631 902 ## COG1275 Tellurite resistance protein and related permeases - Prom 28653 - 28712 4.0 + Prom 28615 - 28674 6.6 30 19 Tu 1 . + CDS 28823 - 29734 554 ## JW1424 hypothetical protein 31 20 Op 1 1/0.846 - CDS 29726 - 30265 934 ## PROTEIN SUPPORTED gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase - Term 30289 - 30317 1.3 32 20 Op 2 . - CDS 30328 - 30552 240 ## COG2841 Uncharacterized protein conserved in bacteria + Prom 30375 - 30434 3.8 33 21 Tu 1 . + CDS 30568 - 30771 69 ## SSON_1717 hypothetical protein 34 22 Tu 1 . - CDS 30692 - 32311 1503 ## COG3131 Periplasmic glucans biosynthesis protein - Prom 32426 - 32485 3.9 35 23 Tu 1 . - CDS 32572 - 33915 983 ## COG5383 Uncharacterized protein conserved in bacteria - Prom 34053 - 34112 4.4 + Prom 34028 - 34087 4.5 36 24 Tu 1 . + CDS 34132 - 35055 468 ## COG0583 Transcriptional regulator - Term 34894 - 34935 -0.7 37 25 Tu 1 . - CDS 35093 - 36733 1164 ## COG0840 Methyl-accepting chemotaxis protein - Prom 36817 - 36876 5.7 - Term 37116 - 37144 -0.9 38 26 Tu 1 . - CDS 37353 - 37526 103 ## SSON_1723 hypothetical protein - Prom 37650 - 37709 8.1 39 27 Tu 1 . - CDS 37771 - 38301 317 ## COG3038 Cytochrome B561 - Prom 38326 - 38385 2.3 + Prom 38285 - 38344 5.2 40 28 Tu 1 . + CDS 38490 - 38606 118 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Prom 38740 - 38799 1.9 41 29 Op 1 . + CDS 38865 - 39242 399 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 42 29 Op 2 . + CDS 39239 - 39490 282 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 39499 - 39532 4.4 - Term 39264 - 39303 -0.0 43 30 Tu 1 . - CDS 39532 - 40971 1498 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 41080 - 41139 5.0 44 31 Tu 1 . - CDS 41168 - 41968 474 ## COG1434 Uncharacterized conserved protein - Prom 42147 - 42206 6.5 45 32 Tu 1 . - CDS 42240 - 46142 4218 ## COG1643 HrpA-like helicases - Prom 46189 - 46248 2.3 + Prom 46134 - 46193 4.0 46 33 Tu 1 . + CDS 46343 - 46948 817 ## COG1182 Acyl carrier protein phosphodiesterase 47 34 Op 1 5/0.179 - CDS 47002 - 48294 552 ## COG0671 Membrane-associated phospholipid phosphatase 48 34 Op 2 3/0.513 - CDS 48308 - 50065 942 ## COG0500 SAM-dependent methyltransferases 49 34 Op 3 4/0.333 - CDS 50081 - 50977 227 ## COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase 50 34 Op 4 . - CDS 50977 - 52683 1084 ## COG0558 Phosphatidylglycerophosphate synthase - Prom 52825 - 52884 11.4 - Term 52940 - 52982 6.4 51 35 Op 1 1/0.846 - CDS 53014 - 53604 540 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 52 35 Op 2 2/0.718 - CDS 53586 - 54536 782 ## COG3327 Phenylacetic acid-responsive transcriptional repressor - Prom 54565 - 54624 2.4 53 36 Op 1 1/0.846 - CDS 54637 - 55950 1184 ## COG1541 Coenzyme F390 synthetase 54 36 Op 2 1/0.846 - CDS 55977 - 57182 1124 ## COG0183 Acetyl-CoA acetyltransferase 55 36 Op 3 1/0.846 - CDS 57182 - 57604 383 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 56 36 Op 4 7/0.026 - CDS 57594 - 59018 1240 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 57 36 Op 5 12/0.000 - CDS 59023 - 59808 792 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 58 36 Op 6 1/0.846 - CDS 59811 - 60578 703 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 59 36 Op 7 2/0.718 - CDS 60575 - 61645 999 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 60 36 Op 8 4/0.333 - CDS 61653 - 62150 492 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 61 36 Op 9 5/0.179 - CDS 62165 - 62911 692 ## COG3396 Uncharacterized conserved protein 62 36 Op 10 5/0.179 - CDS 62920 - 63207 349 ## COG3460 Uncharacterized enzyme of phenylacetate metabolism 63 36 Op 11 . - CDS 63219 - 64148 677 ## COG3396 Uncharacterized conserved protein - Prom 64371 - 64430 7.1 + Prom 64186 - 64245 8.0 64 37 Tu 1 . + CDS 64433 - 66478 1608 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 66482 - 66537 6.7 + Prom 66504 - 66563 3.4 65 38 Tu 1 . + CDS 66726 - 68999 2440 ## COG3733 Cu2+-containing amine oxidase + Term 69018 - 69044 1.0 - Term 69006 - 69032 1.0 66 39 Tu 1 . - CDS 69057 - 70556 1133 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 70663 - 70722 4.2 + Prom 70666 - 70725 4.1 67 40 Tu 1 . + CDS 70792 - 71697 537 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 71702 - 71740 8.7 - Term 71678 - 71742 18.1 68 41 Op 1 . - CDS 71869 - 72195 199 ## COG3784 Uncharacterized protein conserved in bacteria 69 41 Op 2 . - CDS 72203 - 72388 286 ## JW1377 predicted lipoprotein 70 41 Op 3 . - CDS 72385 - 75024 2417 ## JW1376 hypothetical protein - Prom 75166 - 75225 4.4 + Prom 75132 - 75191 8.4 71 42 Op 1 . + CDS 75231 - 76220 1246 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Prom 76238 - 76297 2.2 72 42 Op 2 . + CDS 76319 - 76753 201 ## PROTEIN SUPPORTED gi|163801140|ref|ZP_02195040.1| 50S ribosomal protein L25 - Term 76467 - 76524 6.2 73 43 Tu 1 . - CDS 76750 - 77016 204 ## COG3042 Putative hemolysin - Prom 77116 - 77175 3.6 + Prom 77084 - 77143 6.2 74 44 Tu 1 . + CDS 77290 - 80814 3378 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 80852 - 80883 3.2 + Prom 80988 - 81047 9.2 75 45 Tu 1 . + CDS 81181 - 82314 1240 ## COG3203 Outer membrane protein (porin) + Term 82323 - 82353 2.5 + Prom 82374 - 82433 4.2 76 46 Tu 1 . + CDS 82455 - 82889 388 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 82897 - 82928 2.4 + Prom 82917 - 82976 4.5 77 47 Tu 1 . + CDS 83066 - 84001 962 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Term 84012 - 84049 6.9 - Term 83904 - 83947 -0.8 78 48 Tu 1 . - CDS 84130 - 85428 1126 ## COG0513 Superfamily II DNA and RNA helicases - Term 85835 - 85879 2.2 79 49 Tu 1 . - CDS 85981 - 86964 763 ## COG0598 Mg2+ and Co2+ transporters - Prom 87053 - 87112 5.1 + Prom 87086 - 87145 2.3 80 50 Tu 1 . + CDS 87219 - 88451 923 ## COG2199 FOG: GGDEF domain 81 51 Tu 1 . - CDS 88472 - 89035 660 ## COG2840 Uncharacterized protein conserved in bacteria - Prom 89132 - 89191 5.2 82 52 Tu 1 . - CDS 89365 - 90273 671 ## COG0583 Transcriptional regulator - Prom 90342 - 90401 2.0 + Prom 90326 - 90385 2.3 83 53 Op 1 3/0.513 + CDS 90449 - 91759 999 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 84 53 Op 2 4/0.333 + CDS 91759 - 93204 974 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 85 53 Op 3 2/0.718 + CDS 93241 - 94767 1165 ## COG2978 Putative p-aminobenzoyl-glutamate transporter 86 53 Op 4 4/0.333 + CDS 94778 - 95293 367 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Prom 95403 - 95462 6.2 87 54 Tu 1 7/0.026 + CDS 95488 - 96240 784 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 96262 - 96322 10.1 + Prom 96295 - 96354 3.7 88 55 Tu 1 . + CDS 96392 - 97342 1042 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 97364 - 97394 3.0 - Term 97352 - 97381 2.8 89 56 Tu 1 . - CDS 97392 - 97649 322 ## ECSP_1858 predicted inner membrane protein - Prom 97698 - 97757 1.7 + Prom 97704 - 97763 4.3 90 57 Tu 1 . + CDS 97893 - 98924 784 ## COG0668 Small-conductance mechanosensitive channel + Term 99126 - 99160 0.3 91 58 Tu 1 . - CDS 98975 - 100588 1496 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 100618 - 100677 6.2 - Term 100754 - 100784 1.1 92 59 Tu 1 . - CDS 100925 - 101824 354 ## COG0583 Transcriptional regulator - Prom 101962 - 102021 3.2 + Prom 101837 - 101896 2.4 93 60 Op 1 1/0.846 + CDS 101965 - 102663 704 ## COG1073 Hydrolases of the alpha/beta superfamily 94 60 Op 2 1/0.846 + CDS 102650 - 102907 259 ## COG1073 Hydrolases of the alpha/beta superfamily 95 60 Op 3 1/0.846 + CDS 102978 - 103160 170 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 96 60 Op 4 . + CDS 103242 - 103970 422 ## COG2866 Predicted carboxypeptidase 97 61 Tu 1 . - CDS 103945 - 104910 827 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 104973 - 105032 4.3 + Prom 104941 - 105000 2.3 98 62 Tu 1 . + CDS 105029 - 105535 685 ## COG2077 Peroxiredoxin + Term 105537 - 105590 11.2 - Term 105531 - 105569 10.2 99 63 Tu 1 . - CDS 105579 - 107120 1510 ## COG3283 Transcriptional regulator of aromatic amino acids metabolism - Prom 107149 - 107208 6.5 - Term 107173 - 107215 1.9 100 64 Op 1 9/0.000 - CDS 107268 - 108329 1247 ## COG3768 Predicted membrane protein 101 64 Op 2 . - CDS 108326 - 109723 1276 ## COG3106 Predicted ATPase - Prom 109743 - 109802 3.3 + Prom 109791 - 109850 3.8 102 65 Tu 1 . + CDS 109879 - 110877 861 ## COG1609 Transcriptional regulators 103 66 Op 1 . - CDS 110988 - 111893 1067 ## B21_01307 hypothetical protein 104 66 Op 2 3/0.513 - CDS 111938 - 113020 1239 ## COG3839 ABC-type sugar transport systems, ATPase components 105 66 Op 3 11/0.000 - CDS 113034 - 113693 525 ## COG0637 Predicted phosphatase/phosphohexomutase 106 66 Op 4 4/0.333 - CDS 113690 - 115888 1513 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 107 66 Op 5 16/0.000 - CDS 115954 - 116997 889 ## COG0673 Predicted dehydrogenases and related proteins 108 66 Op 6 3/0.513 - CDS 117019 - 117807 938 ## COG1082 Sugar phosphate isomerases/epimerases 109 66 Op 7 5/0.179 - CDS 117826 - 118878 1229 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 110 66 Op 8 38/0.000 - CDS 118909 - 119751 973 ## COG0395 ABC-type sugar transport system, permease component 111 66 Op 9 35/0.000 - CDS 119738 - 120619 947 ## COG1175 ABC-type sugar transport systems, permease components 112 66 Op 10 2/0.718 - CDS 120640 - 121932 1585 ## COG1653 ABC-type sugar transport system, periplasmic component 113 66 Op 11 1/0.846 - CDS 121946 - 123625 1051 ## COG0366 Glycosidases - Prom 123759 - 123818 3.9 - Term 123791 - 123824 3.6 114 67 Op 1 . - CDS 123838 - 124152 410 ## COG0607 Rhodanese-related sulfurtransferase 115 67 Op 2 . - CDS 124227 - 124448 242 ## ECDH10B_1424 peripheral inner membrane phage-shock protein 116 67 Op 3 . - CDS 124457 - 124816 550 ## COG1983 Putative stress-responsive transcriptional regulator 117 67 Op 4 . - CDS 124816 - 125040 311 ## ECDH10B_1422 phage shock protein B 118 67 Op 5 . - CDS 125094 - 125762 974 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription - Prom 125894 - 125953 3.8 + Prom 125767 - 125826 3.7 119 68 Tu 1 . + CDS 125929 - 126906 925 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 127154 - 127182 -1.0 - Term 126784 - 126819 3.1 120 69 Op 1 4/0.333 - CDS 127026 - 128291 1285 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 121 69 Op 2 6/0.103 - CDS 128329 - 129609 1513 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 122 69 Op 3 4/0.333 - CDS 129611 - 131098 1688 ## COG1012 NAD-dependent aldehyde dehydrogenases 123 70 Op 1 1/0.846 - CDS 131373 - 131930 509 ## COG1396 Predicted transcriptional regulators 124 70 Op 2 . - CDS 131957 - 132709 217 ## COG2071 Predicted glutamine amidotransferases - Prom 132789 - 132848 4.6 + Prom 132786 - 132845 5.4 125 71 Tu 1 . + CDS 132933 - 134351 1236 ## COG0174 Glutamine synthetase + Term 134371 - 134410 1.2 + Prom 134552 - 134611 2.2 126 72 Tu 1 . + CDS 134654 - 136039 1569 ## COG0531 Amino acid transporters + Prom 136081 - 136140 3.9 127 73 Tu 1 . + CDS 136173 - 136418 296 ## Z2493 hypothetical protein + Prom 136649 - 136708 4.0 128 74 Op 1 8/0.000 + CDS 136731 - 138374 1412 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 129 74 Op 2 8/0.000 + CDS 138371 - 139336 588 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 130 74 Op 3 8/0.000 + CDS 139323 - 140213 928 ## COG4171 ABC-type antimicrobial peptide transport system, permease component 131 74 Op 4 8/0.000 + CDS 140213 - 141205 468 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 132 74 Op 5 1/0.846 + CDS 141195 - 142013 448 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Prom 142042 - 142101 6.0 133 75 Tu 1 . + CDS 142207 - 142434 81 ## COG2852 Uncharacterized protein conserved in bacteria + Prom 142662 - 142721 3.6 134 76 Tu 1 . + CDS 142802 - 143590 1104 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 143598 - 143658 5.1 + Prom 143593 - 143652 2.5 135 77 Op 1 1/0.846 + CDS 143734 - 144861 403 ## COG4950 Uncharacterized protein conserved in bacteria 136 77 Op 2 4/0.333 + CDS 144929 - 146863 2149 ## COG4776 Exoribonuclease II + Term 146874 - 146910 6.3 + Prom 146951 - 147010 6.4 137 78 Tu 1 . + CDS 147098 - 149083 1138 ## COG2200 FOG: EAL domain + Term 149154 - 149196 3.1 + Prom 149091 - 149150 6.3 138 79 Op 1 . + CDS 149231 - 149404 233 ## EC55989_1446 hypothetical protein + Prom 149406 - 149465 6.9 139 79 Op 2 . + CDS 149494 - 150243 631 ## COG1349 Transcriptional regulators of sugar metabolism + Term 150254 - 150312 4.1 + Prom 150305 - 150364 5.9 140 80 Tu 1 . + CDS 150512 - 150730 356 ## G2583_1624 hypothetical protein + Term 150824 - 150863 8.4 - Term 150816 - 150847 4.1 141 81 Op 1 6/0.103 - CDS 150856 - 151182 511 ## COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins 142 81 Op 2 7/0.026 - CDS 151182 - 151919 660 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 151971 - 152030 7.6 143 82 Op 1 8/0.000 - CDS 152113 - 153282 1241 ## COG2956 Predicted N-acetylglucosaminyl transferase 144 82 Op 2 5/0.179 - CDS 153289 - 153597 201 ## PROTEIN SUPPORTED gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein - Prom 153661 - 153720 2.9 145 83 Tu 1 . - CDS 153746 - 154510 498 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 154531 - 154590 4.5 + Prom 154547 - 154606 1.6 146 84 Tu 1 . + CDS 154680 - 155270 710 ## COG0807 GTP cyclohydrolase II + Term 155291 - 155342 5.6 - Term 155237 - 155273 4.1 147 85 Tu 1 . - CDS 155334 - 158009 2426 ## COG1048 Aconitase A - Prom 158059 - 158118 3.5 - Term 158133 - 158168 4.0 148 86 Tu 1 . - CDS 158173 - 158268 56 ## 149 87 Op 1 . - CDS 158382 - 158549 141 ## SSON_1865 hypothetical protein 150 87 Op 2 . - CDS 158552 - 158680 63 ## EC55989_1434 hypothetical protein - Prom 158734 - 158793 4.7 - Term 158948 - 159000 9.1 151 88 Tu 1 . - CDS 159011 - 159985 888 ## COG0583 Transcriptional regulator - Prom 160052 - 160111 7.5 - Term 160133 - 160163 2.1 152 89 Tu 1 . - CDS 160195 - 162792 2871 ## COG0550 Topoisomerase IA - Prom 162954 - 163013 3.7 + Prom 162992 - 163051 4.8 153 90 Tu 1 . + CDS 163172 - 163423 417 ## ECIAI1_1292 hypothetical protein + Term 163426 - 163466 6.3 - Term 163414 - 163454 6.6 154 91 Tu 1 . - CDS 163459 - 164508 1047 ## COG0616 Periplasmic serine proteases (ClpP class) - Prom 164538 - 164597 3.6 + Prom 164617 - 164676 2.1 155 92 Op 1 5/0.179 + CDS 164728 - 165486 719 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 156 92 Op 2 . + CDS 165483 - 166073 707 ## COG2109 ATP:corrinoid adenosyltransferase + Term 166084 - 166117 2.5 - Term 166072 - 166104 1.5 157 93 Tu 1 . - CDS 166113 - 166988 1169 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 167137 - 167196 2.7 158 94 Op 1 . - CDS 167199 - 169094 750 ## JW5197 predicted inner membrane protein 159 94 Op 2 6/0.103 - CDS 169122 - 169742 778 ## COG0009 Putative translation factor (SUA5) 160 94 Op 3 . - CDS 169739 - 170620 382 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) - Prom 170699 - 170758 5.8 + Prom 170672 - 170731 6.1 161 95 Op 1 10/0.000 + CDS 170894 - 172456 1603 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 162 95 Op 2 21/0.000 + CDS 172456 - 174051 1631 ## COG0547 Anthranilate phosphoribosyltransferase 163 95 Op 3 13/0.000 + CDS 174055 - 175413 1184 ## COG0134 Indole-3-glycerol phosphate synthase 164 95 Op 4 37/0.000 + CDS 175425 - 176618 1322 ## COG0133 Tryptophan synthase beta chain 165 95 Op 5 2/0.718 + CDS 176618 - 177424 392 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc + Term 177432 - 177464 5.4 + Prom 177607 - 177666 4.8 166 96 Op 1 3/0.513 + CDS 177805 - 177984 220 ## COG3729 General stress protein + Term 178025 - 178064 6.2 167 96 Op 2 4/0.333 + CDS 178070 - 178570 616 ## COG3685 Uncharacterized protein conserved in bacteria 168 96 Op 3 . + CDS 178616 - 179122 646 ## COG3685 Uncharacterized protein conserved in bacteria + Term 179146 - 179180 6.0 169 97 Tu 1 . - CDS 179182 - 179289 56 ## COG3047 Outer membrane protein W - Prom 179378 - 179437 5.2 Predicted protein(s) >gi|223713582|gb|ACDM01000016.1| GENE 1 2 - 389 337 129 aa, chain - ## HITS:1 COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 129 17 145 682 258 99.0 2e-69 MSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRVTPDSLPPVEWLTY GSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLTSTYTPAGQLQSQHLNS LVYDRDYGW >gi|223713582|gb|ACDM01000016.1| GENE 2 462 - 1232 733 256 aa, chain - ## HITS:1 COG:ECs0607 KEGG:ns NR:ns ## COG: ECs0607 COG3501 # Protein_GI_number: 15829861 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 253 1 253 633 490 97.0 1e-139 MSTGLRFTLEVDGLPPDAFAVVSFHLNQSLSSLFSLDLSLVSQQFLSLEFAQVLDKMAYL TIWQGDEVQRRVKGVVTWFELGENDKNQMLYSMKVHPPLWRAGLRQNFRIFQNEDIKSIL GTMLQENGVTEWSPLFSEPHPSREFCVQYGETDYDFLCRMAAEEGIFFYEEHAYKSTDQS LVLCDTVRHLPESFEIPWNPNTRTEVSTLCISQFRYSAQIRPSSVVTKDYTFKRPGWAGR FEQEGQHQDYPLTATR >gi|223713582|gb|ACDM01000016.1| GENE 3 2052 - 2264 93 70 aa, chain - ## HITS:1 COG:no KEGG:B21_01423 NR:ns ## KEGG: B21_01423 # Name: yncH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 70 1 70 70 102 100.0 3e-21 MVCFLIYITLLFIQRVYFISSEKKLTIHIVQMFQLLSQAFYNLKMFLMMDMLGVGDAINI NTNKNIRQVC >gi|223713582|gb|ACDM01000016.1| GENE 4 2340 - 2957 459 205 aa, chain - ## HITS:1 COG:yncG KEGG:ns NR:ns ## COG: yncG COG0625 # Protein_GI_number: 16129413 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1 205 1 205 205 415 99.0 1e-116 MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGASRELLKTLNPLCQVPTLALEN DEIMTETAAIALMVLDRRPDLAPPVGRAERQLFQRQLVWLVANVYPTFTFADYPERWAPD APEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDCYLCTMRTWGPGHEWFQDNAT NISAIADAVCQLPKLQEVLKRNEII >gi|223713582|gb|ACDM01000016.1| GENE 5 3224 - 4723 1566 499 aa, chain + ## HITS:1 COG:ECs2057 KEGG:ns NR:ns ## COG: ECs2057 COG1113 # Protein_GI_number: 15831311 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1 499 18 516 516 918 100.0 0 MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAG PALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAM TGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLA IVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATL VVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP GAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVRKRVAEIHSTAP VVEEDEEKQEIVFKPETAS >gi|223713582|gb|ACDM01000016.1| GENE 6 4836 - 5897 1326 353 aa, chain - ## HITS:1 COG:yncE KEGG:ns NR:ns ## COG: yncE COG3391 # Protein_GI_number: 16129411 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 353 1 353 353 619 99.0 1e-177 MHLRHLFSSRLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATS QSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT ARQRAFITDSKAAEVLVVDTRNGNILTKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL >gi|223713582|gb|ACDM01000016.1| GENE 7 6139 - 8241 1469 700 aa, chain + ## HITS:1 COG:yncD KEGG:ns NR:ns ## COG: yncD COG1629 # Protein_GI_number: 16129410 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli K12 # 1 700 1 700 700 1379 100.0 0 MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFN SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMY AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS SVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS YRADGQSGMNLGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK NAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVD NLFDKEYVGSVIVNESNGRYYEPSPGRNYGVGMNIAWRFE >gi|223713582|gb|ACDM01000016.1| GENE 8 8277 - 8942 607 221 aa, chain - ## HITS:1 COG:yncC KEGG:ns NR:ns ## COG: yncC COG1802 # Protein_GI_number: 16129409 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 221 20 240 240 405 100.0 1e-113 MPGTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVS VNALSVAPAQAFTVPEVGKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQ QAQEKGDMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPAELRE HIENYHLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQYNR >gi|223713582|gb|ACDM01000016.1| GENE 9 9140 - 10177 995 345 aa, chain - ## HITS:1 COG:yncB KEGG:ns NR:ns ## COG: yncB COG2130 # Protein_GI_number: 16129408 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 345 32 376 376 709 100.0 0 MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSD EPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHP QNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGV AGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNT SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMG QWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD >gi|223713582|gb|ACDM01000016.1| GENE 10 10358 - 10876 497 172 aa, chain + ## HITS:1 COG:yncA KEGG:ns NR:ns ## COG: yncA COG1247 # Protein_GI_number: 16129407 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Escherichia coli K12 # 1 172 1 172 172 356 100.0 1e-98 MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENG VVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGI ESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG >gi|223713582|gb|ACDM01000016.1| GENE 11 10873 - 11322 416 149 aa, chain + ## HITS:1 COG:ydcZ KEGG:ns NR:ns ## COG: ydcZ COG3238 # Protein_GI_number: 16129406 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 149 1 149 149 222 100.0 2e-58 MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMA GFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSH GVPLRALFGPICGAILLVVGAWLVARRSF >gi|223713582|gb|ACDM01000016.1| GENE 12 11323 - 11556 372 77 aa, chain - ## HITS:1 COG:no KEGG:G2583_1807 NR:ns ## KEGG: G2583_1807 # Name: ydcY # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 77 1 77 77 112 100.0 5e-24 MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHK EDMEARHEQLTKGGTIL >gi|223713582|gb|ACDM01000016.1| GENE 13 11642 - 11890 149 82 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1578 NR:ns ## KEGG: EC55989_1578 # Name: ydcX # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1 82 1 82 82 133 98.0 2e-30 MKKLDARQKMTHICARFIHLVGRPYMSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFL SAFLVGATWPMSFPVALLFSLF >gi|223713582|gb|ACDM01000016.1| GENE 14 12202 - 13626 1351 474 aa, chain - ## HITS:1 COG:ydcW KEGG:ns NR:ns ## COG: ydcW COG1012 # Protein_GI_number: 16129403 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 474 1 474 474 928 99.0 0 MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTP KVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNG LAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLT ALKLAELAKDIFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSI KRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKL GAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATGHIKVITGGEKRKGNGYYY APTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHR VSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVKH >gi|223713582|gb|ACDM01000016.1| GENE 15 13648 - 14442 728 264 aa, chain - ## HITS:1 COG:ydcV KEGG:ns NR:ns ## COG: ydcV COG1177 # Protein_GI_number: 16129402 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli K12 # 1 264 1 264 264 422 100.0 1e-118 MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD ILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL LVMLVTTLPILGAWWLTREGDNGQ >gi|223713582|gb|ACDM01000016.1| GENE 16 14432 - 15373 1070 313 aa, chain - ## HITS:1 COG:ydcU KEGG:ns NR:ns ## COG: ydcU COG1176 # Protein_GI_number: 16129401 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli K12 # 1 313 1 313 313 508 100.0 1e-144 MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFD DFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKM KAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTL STSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALY LAFVKRLGAFDAL >gi|223713582|gb|ACDM01000016.1| GENE 17 15374 - 16387 893 337 aa, chain - ## HITS:1 COG:ydcT KEGG:ns NR:ns ## COG: ydcT COG3842 # Protein_GI_number: 16129400 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1 337 1 337 337 670 100.0 0 MTYAVEFDNVSRLYGDVRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGA ISIFGKPASNLPPWERDVNTVFQDYALFPHMSILDNVAYGLMVKGVNKKQRHAMAQEALE KVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELKKL QQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIEQVDSPRDLYMRPRTPFVAGFVGTSNV FDGLMAEKLCGMTGSFALRPEHIRLNTPGELQANGTIQAVQYQGAATRFELKLNGGEKLL VSQANMTGEELPATLTPGQQVMVSWSRDVMVPLVEER >gi|223713582|gb|ACDM01000016.1| GENE 18 16405 - 17550 1200 381 aa, chain - ## HITS:1 COG:ydcS KEGG:ns NR:ns ## COG: ydcS COG0687 # Protein_GI_number: 16129399 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1 381 1 381 381 770 100.0 0 MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKG RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTT VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE GGKFVPYSRWTQDYIAIMGGR >gi|223713582|gb|ACDM01000016.1| GENE 19 17795 - 19201 1089 468 aa, chain - ## HITS:1 COG:ydcR KEGG:ns NR:ns ## COG: ydcR COG1167 # Protein_GI_number: 16129398 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Escherichia coli K12 # 1 468 1 468 468 920 100.0 0 MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARP QSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPL QQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGALEAL NLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPV KACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDR HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRY DAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLAALT HHISIAPGKMFSTGENWSRFFRFNTAWQWGEREEQAVKQLGKLIQERL >gi|223713582|gb|ACDM01000016.1| GENE 20 19280 - 19717 375 145 aa, chain - ## HITS:1 COG:ECs2042 KEGG:ns NR:ns ## COG: ECs2042 COG1598 # Protein_GI_number: 15831296 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 145 1 145 145 263 100.0 9e-71 MRETVEIMRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFED NELIPLPSPLNSHDHFIEVPLSVASKVLLLNAFLQSEITQQELARRIGKPKQEITRLFNL HHATKIDAVQLAAKALGKELSLVMV >gi|223713582|gb|ACDM01000016.1| GENE 21 20200 - 20370 196 56 aa, chain + ## HITS:1 COG:no KEGG:JW1432 NR:ns ## KEGG: JW1432 # Name: yncJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 56 21 76 76 102 100.0 6e-21 MAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR >gi|223713582|gb|ACDM01000016.1| GENE 22 20462 - 22423 1700 653 aa, chain - ## HITS:1 COG:ECs2039 KEGG:ns NR:ns ## COG: ECs2039 COG0826 # Protein_GI_number: 15831293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1 653 15 667 667 1354 99.0 0 MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD IRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHGALCVAYSGQCYISH AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYF VNARKGDIGAFDSPKFIGLPVGEVVKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRAN TVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGW QEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTLYYARDVQINLPG ALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAR EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLKTLPKRKG >gi|223713582|gb|ACDM01000016.1| GENE 23 22496 - 23032 322 178 aa, chain - ## HITS:1 COG:ydcN KEGG:ns NR:ns ## COG: ydcN COG1396 # Protein_GI_number: 16129393 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 178 1 178 178 361 100.0 1e-100 MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS >gi|223713582|gb|ACDM01000016.1| GENE 24 23124 - 24299 851 391 aa, chain + ## HITS:1 COG:ydcO KEGG:ns NR:ns ## COG: ydcO COG3135 # Protein_GI_number: 16129392 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in benzoate metabolism # Organism: Escherichia coli K12 # 1 391 88 478 478 640 100.0 0 MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLT LTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRII PHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVI VIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYS APVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLL AGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGL TLVGIGSAFWGLIAGGVCYVVLNLIADRNRY >gi|223713582|gb|ACDM01000016.1| GENE 25 24339 - 25487 157 382 aa, chain - ## HITS:1 COG:ydcM KEGG:ns NR:ns ## COG: ydcM COG0675 # Protein_GI_number: 16129391 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 382 21 402 402 734 100.0 0 MRRFAGACRFVFNRALARQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQ QSLKDLERAYKNFFRKRAAFPRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNS RQVTGVVKNVTVSQSCGKWYISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTVFEP VNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTAVSKN HAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLAYKQLWRGG QVLAVPPAYTSQRCAYCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLAC GEMVQSGRPLKQEPTEMIQATA >gi|223713582|gb|ACDM01000016.1| GENE 26 25618 - 25842 70 74 aa, chain + ## HITS:1 COG:ECs5182 KEGG:ns NR:ns ## COG: ECs5182 COG1943 # Protein_GI_number: 15834436 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 74 22 95 143 153 97.0 6e-38 MHVHLLFVTRYRRQIFDHDATEKLRTYFSNVCADFEAELVEMDGEPDHVHLLINYPPKLA ISSLVNSLKGVSGR >gi|223713582|gb|ACDM01000016.1| GENE 27 26079 - 26747 699 222 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1562 NR:ns ## KEGG: EC55989_1562 # Name: ydcL # Def: putative lipoprotein # Organism: E.coli_55989 # Pathway: not_defined # 1 222 1 222 222 434 100.0 1e-120 MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSF DQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSL IFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVI KVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK >gi|223713582|gb|ACDM01000016.1| GENE 28 27049 - 27642 612 197 aa, chain - ## HITS:1 COG:tehB KEGG:ns NR:ns ## COG: tehB COG0500 # Protein_GI_number: 16129389 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 197 1 197 197 403 100.0 1e-113 MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDK NAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANM QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDA NGNRIKLRFATMLARKK >gi|223713582|gb|ACDM01000016.1| GENE 29 27639 - 28631 902 330 aa, chain - ## HITS:1 COG:tehA KEGG:ns NR:ns ## COG: tehA COG1275 # Protein_GI_number: 16129388 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Escherichia coli K12 # 1 330 1 330 330 577 99.0 1e-164 MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGLVILAMIIWGLLTSAFI ARLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFHPLAVCLFSFGVVVQLAYA AWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALGYTDAGLVFLGAGVFSWLSLE PVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSVNGGEGDTLAKMLFGYGLLQLLF MLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGSGSDNGFFHTLAVPLFIFTNFIIAI LLIRTFALLMQGKLLVRTERAVLMKAEDKE >gi|223713582|gb|ACDM01000016.1| GENE 30 28823 - 29734 554 303 aa, chain + ## HITS:1 COG:no KEGG:JW1424 NR:ns ## KEGG: JW1424 # Name: ydcK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 303 24 326 326 591 99.0 1e-167 MLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGT SVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQG LTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVW LCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPI LLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLA GLL >gi|223713582|gb|ACDM01000016.1| GENE 31 29726 - 30265 934 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase [Escherichia coli str. K-12 substr. MG1655] # 1 179 1 179 179 364 100 2e-99 MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVM LHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDESHQGQGIISQALQALIHH YAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAEFLNDAYDDVNLYARIIDSQ >gi|223713582|gb|ACDM01000016.1| GENE 32 30328 - 30552 240 74 aa, chain - ## HITS:1 COG:ydcH KEGG:ns NR:ns ## COG: ydcH COG2841 # Protein_GI_number: 16129385 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 20 74 1 55 55 82 100.0 2e-16 MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKD EMLKILQQESVKEV >gi|223713582|gb|ACDM01000016.1| GENE 33 30568 - 30771 69 67 aa, chain + ## HITS:1 COG:no KEGG:SSON_1717 NR:ns ## KEGG: SSON_1717 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 67 1 67 67 124 100.0 1e-27 MADKVYLKYTPSDYSFNLGKNASGIVFNQTAPPEEGAEEKTINSSRGRQHTDVYPALAGN TDTAMFH >gi|223713582|gb|ACDM01000016.1| GENE 34 30692 - 32311 1503 539 aa, chain - ## HITS:1 COG:ydcG KEGG:ns NR:ns ## COG: ydcG COG3131 # Protein_GI_number: 16129383 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Escherichia coli K12 # 1 539 13 551 551 1130 100.0 0 MAAVCGTSGIASLFSQAAFAADSDIADGQTQRFDFSILQSMAHDLAQTAWRGAPRPLPDT LATMTPQAYNSIQYDAEKSLWHNVENRQLDAQFFHMGMGFRRRVRMFSVDPATHLAREIH FRPELFKYNDAGVDTKQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQY GLSARGLAIDTYTDSKEEFPDFTAFWFDTVKPGATTFTVYALLDSASITGAYKFTIHCEK SQVIMDVENHLYARKDIKQLGIAPMTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGE WICRPLNNPQKLQFNAYTDNNPKGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGK GTIGLMEIPTTGETLDNIVCFWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRT GMGGFSEGWAPGEHYPEKWARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIE PIDGYRIQFDWYPTSDSTDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS >gi|223713582|gb|ACDM01000016.1| GENE 35 32572 - 33915 983 447 aa, chain - ## HITS:1 COG:ydcJ KEGG:ns NR:ns ## COG: ydcJ COG5383 # Protein_GI_number: 16129382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 447 1 447 447 873 100.0 0 MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADEL ARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLA RNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLEEYEQQGGFNETQAQEF VQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP ECGIEPKILIEGPPRREVPILLRQTSFKALEETVLFAGQKQGTHTARFGEIEQRGVALTP KGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFPDSEFLMRQQGLAWFRYRLTPSGEAHR QAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNASREAFEQ ALGCPVLDEFQLYQEAEERSKRRCGLL >gi|223713582|gb|ACDM01000016.1| GENE 36 34132 - 35055 468 307 aa, chain + ## HITS:1 COG:ydcI KEGG:ns NR:ns ## COG: ydcI COG0583 # Protein_GI_number: 16129381 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 307 48 354 354 600 100.0 1e-171 MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER GRQGAQLTLPGEQFLTHAVRVLDAINTAGRSLHRKEGLNNDVVRVGALPTAALGILPSVI GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA IRKSMPF >gi|223713582|gb|ACDM01000016.1| GENE 37 35093 - 36733 1164 546 aa, chain - ## HITS:1 COG:trg KEGG:ns NR:ns ## COG: trg COG0840 # Protein_GI_number: 16129380 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 1 546 1 546 546 899 100.0 0 MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLWQADRDQRDVTAEIEIR TGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESEIKQSQQGYRAYQNRPVKT PADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHESEQIRPLDNAYTDILNKAVK IRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKI ASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLS SRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMG AISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQ AAKEIEGLISESVRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQ VSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLHKHSVSAEPRGAGEP VSFATV >gi|223713582|gb|ACDM01000016.1| GENE 38 37353 - 37526 103 57 aa, chain - ## HITS:1 COG:no KEGG:SSON_1723 NR:ns ## KEGG: SSON_1723 # Name: ydcA # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 57 1 57 57 92 100.0 4e-18 MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCNDGSISASKKTCTN >gi|223713582|gb|ACDM01000016.1| GENE 39 37771 - 38301 317 176 aa, chain - ## HITS:1 COG:STM1639 KEGG:ns NR:ns ## COG: STM1639 COG3038 # Protein_GI_number: 16764983 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Salmonella typhimurium LT2 # 1 175 1 175 176 281 84.0 5e-76 MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRS >gi|223713582|gb|ACDM01000016.1| GENE 40 38490 - 38606 118 38 aa, chain + ## HITS:1 COG:gapC KEGG:ns NR:ns ## COG: gapC COG0057 # Protein_GI_number: 16132227 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1 38 1 38 332 78 100.0 4e-15 MSKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSP >gi|223713582|gb|ACDM01000016.1| GENE 41 38865 - 39242 399 125 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 125 126 250 333 238 99.0 2e-63 MKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSL VDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSVTELVS ILGKK >gi|223713582|gb|ACDM01000016.1| GENE 42 39239 - 39490 282 83 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 83 251 333 333 160 98.0 6e-40 MTAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTV AWYDNEYGFVTQLIRTLEKFAKL >gi|223713582|gb|ACDM01000016.1| GENE 43 39532 - 40971 1498 479 aa, chain - ## HITS:1 COG:aldA KEGG:ns NR:ns ## COG: aldA COG1012 # Protein_GI_number: 16129376 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 479 1 479 479 948 100.0 0 MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEW EALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWAR RYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEF TPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMAT AAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQ FVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEG KGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNL NVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVYLQS >gi|223713582|gb|ACDM01000016.1| GENE 44 41168 - 41968 474 266 aa, chain - ## HITS:1 COG:ydcF KEGG:ns NR:ns ## COG: ydcF COG1434 # Protein_GI_number: 16129375 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 266 1 266 266 550 100.0 1e-156 MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARD QQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIE DQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYP GFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP AEVIHAWQTLKHDAVLIEAMESRSLR >gi|223713582|gb|ACDM01000016.1| GENE 45 42240 - 46142 4218 1300 aa, chain - ## HITS:1 COG:hrpA KEGG:ns NR:ns ## COG: hrpA COG1643 # Protein_GI_number: 16129374 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli K12 # 20 1300 1 1281 1281 2546 100.0 0 MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGE REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDW HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG >gi|223713582|gb|ACDM01000016.1| GENE 46 46343 - 46948 817 201 aa, chain + ## HITS:1 COG:acpD KEGG:ns NR:ns ## COG: acpD COG1182 # Protein_GI_number: 16129373 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Escherichia coli K12 # 1 201 1 201 201 386 100.0 1e-107 MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALR PSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFR YTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYG PEMAAKAQSDAKAAIDSIVSA >gi|223713582|gb|ACDM01000016.1| GENE 47 47002 - 48294 552 430 aa, chain - ## HITS:1 COG:ynbD_1 KEGG:ns NR:ns ## COG: ynbD_1 COG0671 # Protein_GI_number: 16129372 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli K12 # 1 342 1 342 342 652 100.0 0 MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSL DLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQL ELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVI TGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWL CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVS KMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVA MLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEH KAMLRLWENR >gi|223713582|gb|ACDM01000016.1| GENE 48 48308 - 50065 942 585 aa, chain - ## HITS:1 COG:ynbC_2 KEGG:ns NR:ns ## COG: ynbC_2 COG0500 # Protein_GI_number: 16129371 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 275 585 1 311 311 645 100.0 0 MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPD TAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVL VATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDR QRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQID FYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGP SADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQ PQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGR YVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPR PTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDG KPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN >gi|223713582|gb|ACDM01000016.1| GENE 49 50081 - 50977 227 298 aa, chain - ## HITS:1 COG:ynbB KEGG:ns NR:ns ## COG: ynbB COG4589 # Protein_GI_number: 16129370 # Func_class: R General function prediction only # Function: Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase # Organism: Escherichia coli K12 # 1 298 1 298 298 522 100.0 1e-148 MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMT LTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILAT GQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESN DIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGL LIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY >gi|223713582|gb|ACDM01000016.1| GENE 50 50977 - 52683 1084 568 aa, chain - ## HITS:1 COG:ynbA KEGG:ns NR:ns ## COG: ynbA COG0558 # Protein_GI_number: 16129369 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli K12 # 467 568 102 203 203 223 100.0 7e-58 MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSEC SPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTP GGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGR KATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDST GTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIV NNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGG GHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDA TANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGALYLPFLFLPESNA SLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNN LLWSIASILLLWTAINRCRSVLLMSAEI >gi|223713582|gb|ACDM01000016.1| GENE 51 53014 - 53604 540 196 aa, chain - ## HITS:1 COG:paaY KEGG:ns NR:ns ## COG: paaY COG0663 # Protein_GI_number: 16129361 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli K12 # 1 196 1 196 196 393 100.0 1e-109 MPIYQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQD NCVMHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAF VKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIE PGRKRLVFDENLRPKQ >gi|223713582|gb|ACDM01000016.1| GENE 52 53586 - 54536 782 316 aa, chain - ## HITS:1 COG:paaX KEGG:ns NR:ns ## COG: paaX COG3327 # Protein_GI_number: 16129360 # Func_class: K Transcription # Function: Phenylacetic acid-responsive transcriptional repressor # Organism: Escherichia coli K12 # 1 316 1 316 316 627 100.0 1e-179 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR FGGLNIEQEALCQFIR >gi|223713582|gb|ACDM01000016.1| GENE 53 54637 - 55950 1184 437 aa, chain - ## HITS:1 COG:paaK KEGG:ns NR:ns ## COG: paaK COG1541 # Protein_GI_number: 16129359 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Escherichia coli K12 # 1 437 1 437 437 912 100.0 0 MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDL RKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARS LRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDM IMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGL SEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVI RYRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQL EVNRRGHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPR SEGKACRVFDLRNIVGA >gi|223713582|gb|ACDM01000016.1| GENE 54 55977 - 57182 1124 401 aa, chain - ## HITS:1 COG:paaJ KEGG:ns NR:ns ## COG: paaJ COG0183 # Protein_GI_number: 16129358 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 401 1 401 401 737 100.0 0 MREAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQA GEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESM SRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISRED QDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKA PFRANGVITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGVEPRLMGLGPV PATRRVLERAGLSIHDMDVIELNEAFAAQALGVLRELGLPDDAPHVNPNGGAIALGHPLG MSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMILERV >gi|223713582|gb|ACDM01000016.1| GENE 55 57182 - 57604 383 140 aa, chain - ## HITS:1 COG:paaI KEGG:ns NR:ns ## COG: paaI COG2050 # Protein_GI_number: 16129357 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1 140 1 140 140 255 100.0 2e-68 MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLA DTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQK TVALFRGKSHRIGGTITGEA >gi|223713582|gb|ACDM01000016.1| GENE 56 57594 - 59018 1240 474 aa, chain - ## HITS:1 COG:ydbU KEGG:ns NR:ns ## COG: ydbU COG1250 # Protein_GI_number: 16129356 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 1 474 2 475 475 920 100.0 0 MINVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKL TAETCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTS SISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPV RCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDV NFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDS FSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNP DSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASEQDIDTAMRL GVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYES >gi|223713582|gb|ACDM01000016.1| GENE 57 59023 - 59808 792 261 aa, chain - ## HITS:1 COG:paaG KEGG:ns NR:ns ## COG: paaG COG1024 # Protein_GI_number: 16129355 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1 261 2 262 262 489 100.0 1e-138 MEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFC AGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGG DIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMI WQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRS ADYREGVSAFLAKRSPQFTGK >gi|223713582|gb|ACDM01000016.1| GENE 58 59811 - 60578 703 255 aa, chain - ## HITS:1 COG:ydbS KEGG:ns NR:ns ## COG: ydbS COG1024 # Protein_GI_number: 16129354 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1 255 1 255 255 435 100.0 1e-122 MSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFA AGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAG ENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPS DLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEG ISAFLQKRTPDFKGR >gi|223713582|gb|ACDM01000016.1| GENE 59 60575 - 61645 999 356 aa, chain - ## HITS:1 COG:paaE KEGG:ns NR:ns ## COG: paaE COG1018 # Protein_GI_number: 16129353 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 356 1 356 356 715 100.0 0 MTTFHSLTVAKVESETRDAVTITFAVPQPLQEAYRFRPGQHLTLKASFDGEELRRCYSIC RSYLPGEISVAVKAIEGGRFSRYAREHIRQGMTLEVMVPQGHFGYQPQAERQGRYLAIAA GSGITPMLAIIATTLQTEPESQFTLIYGNRTSQSMMFRQALADLKDKYPQRLQLLCIFSQ ETLDSDLLHGRIDGEKLQSLGASLINFRLYDEAFICGPAAMMDDAETALKALGMPDKTIH LERFNTPGTRVKRSVNVQSDGQKVTVRQDGRDREIVLNADDESILDAALRQGADLPYACK GGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVDFDAKGMA >gi|223713582|gb|ACDM01000016.1| GENE 60 61653 - 62150 492 165 aa, chain - ## HITS:1 COG:paaD KEGG:ns NR:ns ## COG: paaD COG2151 # Protein_GI_number: 16129352 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Escherichia coli K12 # 1 165 3 167 167 327 99.0 7e-90 MQRLATIAPPQVHEIWALLSQIPDPEIPVLTITDLGMVRNVTQMGEGWVIGFTPTYSGCP ATEHLIGAIREAMTTNGFTPVQVVLQLDPAWTTDWMTPDARERLREYGISPPTGHSCHAH LPPEVRCPRCASVHTTLISEFGSTACKALYRCDSCREPFDYFKCI >gi|223713582|gb|ACDM01000016.1| GENE 61 62165 - 62911 692 248 aa, chain - ## HITS:1 COG:ydbP KEGG:ns NR:ns ## COG: ydbP COG3396 # Protein_GI_number: 16129351 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 248 1 248 248 487 100.0 1e-138 MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELA GEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLA AISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALS EEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQ RVLPGQQW >gi|223713582|gb|ACDM01000016.1| GENE 62 62920 - 63207 349 95 aa, chain - ## HITS:1 COG:ynbF KEGG:ns NR:ns ## COG: ynbF COG3460 # Protein_GI_number: 16129350 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized enzyme of phenylacetate metabolism # Organism: Escherichia coli K12 # 1 95 1 95 95 189 100.0 8e-49 MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM >gi|223713582|gb|ACDM01000016.1| GENE 63 63219 - 64148 677 309 aa, chain - ## HITS:1 COG:ydbO KEGG:ns NR:ns ## COG: ydbO COG3396 # Protein_GI_number: 16129349 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 309 1 309 309 632 100.0 0 MTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLR RKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGV IGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQML QDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTV PDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHA QKQHARKVA >gi|223713582|gb|ACDM01000016.1| GENE 64 64433 - 66478 1608 681 aa, chain + ## HITS:1 COG:maoC_1 KEGG:ns NR:ns ## COG: maoC_1 COG1012 # Protein_GI_number: 16129348 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 500 1 500 500 935 100.0 0 MQQLASFLSGTWQSGRGRSRLIHHAISGEALWEVTSEGLDMAAARQFAIEKGAPALRAMT FIERAAMLKAVAKHLLSEKERFYALSAQTGATRADSWVDIEGGIGTLFTYASLGSRELPD DTLWPEDELIPLSKEGGFAARHLLTSKSGVAVHINAFNFPCWGMLEKLAPTWLGGMPAII KPATATAQLTQAMVKSIVDSGLVPEGAISLICGSAGDLLDHLDSQDVVTFTGSAATGQML RVQPNIVAKSIPFTMEADSLNCCVLGEDVTPDQPEFALFIREVVREMTTKAGQKCTAIRR IIVPQALVNAVSDALVARLQKVVVGDPAQEGVKMGALVNAEQRADVQEKVNILLAAGCEI RLGGQADLSAAGAFFPPTLLYCPQPDETPAVHATEAFGPVATLMPAQNQRHALQLACAGG GSLAGTLVTADPQIARQFIADAARTHGRIQILNEESAKESTGHGSPLPQLVHGGPGRAGG GEELGGLRAVKHYMQRTAVQGSPTMLAAISKQWVRGAKVEEDRIHPFRKYFEELQPGDSL LTPRRTMTEADIVNFACLSGDHFYAHMDKIAAAESIFGERVVHGYFVLSAAAGLFVDAGV GPVIANYGLESLRFIEPVKPGDTIQVRLTCKRKTLKKQRSAEEKPTGVVEWAVEVFNQHQ TPVALYSILTLVARQHGDFVD >gi|223713582|gb|ACDM01000016.1| GENE 65 66726 - 68999 2440 757 aa, chain + ## HITS:1 COG:tynA KEGG:ns NR:ns ## COG: tynA COG3733 # Protein_GI_number: 16129347 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cu2+-containing amine oxidase # Organism: Escherichia coli K12 # 1 757 1 757 757 1540 100.0 0 MGSPSLYSARKTTLALAVALSFAWQAPVFAHGGEAHMVPMDKTLKEFGADVQWDDYAQLF TLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSDTFINDVFQSGLDQTFQVE KRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPR KADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVK KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL EQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDF HLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMG TLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVST ERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTR YGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNI GNEQDAAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHR LSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHV ARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKDK >gi|223713582|gb|ACDM01000016.1| GENE 66 69057 - 70556 1133 499 aa, chain - ## HITS:1 COG:feaB KEGG:ns NR:ns ## COG: feaB COG1012 # Protein_GI_number: 16129346 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 499 2 500 500 1001 100.0 0 MTEPHVAVLSQVQQFLDRQHGLYIDGRPGPAQSEKRLAIFDPATGQEIASTADANEADVD NAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKSIAISRAFE VGCTLNWMRYTAGLTTKIAGKTLDLSIPLPQGARYQAWTRKEPVGVVAGIVPWNFPLMIG MWKVMPALAAGCSIVIKPSETTPLTMLRVAELASEAGIPDGVFNVVTGSGAVCGAALTSH PHVAKISFTGSTATGKGIARTAADHLTRVTLELGGKNPAIVLKDADPQWVIEGLMTGSFL NQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQVGPGMSPVAQINPLVSRAHCDKVCSF LDDAQAQQAELIRGSNGPAGEGYYVAPTLVVNPDAKLRLTREEVFGPVVNLVRVADGEEA LQLANDTEYGLTASVWTQNLSQALEYSDRLQAGTVWVNSHTLIDANLPFGGMKQSGTGRD FGPDWLDGWCETKSVCVRY >gi|223713582|gb|ACDM01000016.1| GENE 67 70792 - 71697 537 301 aa, chain + ## HITS:1 COG:feaR KEGG:ns NR:ns ## COG: feaR COG2207 # Protein_GI_number: 16129345 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 301 1 301 301 611 99.0 1e-175 MNPAVDNEFQQWLSQINQVCGNFTGRLLTERYTGVLDTHFAKGLKLSTVTTSGVNLSRTW QEVKGSDDAWFYTVFQLSGQAIMEQDERQVQIGAGDITLLDASRPCSLYWQESSKQISLL LPRTLLEQYFPHQKPVCAERLDADLPMVQLSHRLLQESMNNPALSETESEAALQAMVCLL RPVLHQRESVQPRRERQFQKVVTLIDDNIREEILRPEWIAGETGMSVRSLYRMFADKGLV VAQYIRNRRLDFCADAIRHAADDEKLAGIGFHWGFSDQSHFSTVFKQRFGMTPGEYRRKF R >gi|223713582|gb|ACDM01000016.1| GENE 68 71869 - 72195 199 108 aa, chain - ## HITS:1 COG:ydbL KEGG:ns NR:ns ## COG: ydbL COG3784 # Protein_GI_number: 16129344 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 108 3 110 110 197 100.0 5e-51 MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAE RKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF >gi|223713582|gb|ACDM01000016.1| GENE 69 72203 - 72388 286 61 aa, chain - ## HITS:1 COG:no KEGG:JW1377 NR:ns ## KEGG: JW1377 # Name: ynbE # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1 61 1 61 61 101 100.0 1e-20 MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIIIKADKDVEELLETRSDL F >gi|223713582|gb|ACDM01000016.1| GENE 70 72385 - 75024 2417 879 aa, chain - ## HITS:1 COG:no KEGG:JW1376 NR:ns ## KEGG: JW1376 # Name: ydbH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 879 1 879 879 1696 100.0 0 MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRIALDESPRITRKGLIIP DLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKLPQTEQSPAAPKTLAQWQA MLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGEKVKFQGQLKGQQLTVSELDV VAFENQPPVKLVGEFAMPLVPDGLPVSGHATATLNLPQEPSLVDAELDWQENSGQLIVLA RDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLSGRLGVKVDNWQAGLENALVSGRLS VLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTGEAKQADLILYARLPAQLSGSLSDPTL TFEPGALLRSKGRVIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMD GLANDFLPDAGRWQWRYWGKGSFTPMNATWDVAGKGEWHDSTITLTDLSTGFDQLQYGTM TVEKPRLILDKPIVWVRDAQHPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYF LFKGDLHAGEIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQV AFSAAPEQGFRAGGHGVLKGGSAWMPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAE VINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVK DNMTAGSAINWLRYMEISRSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEEN IFTLWRSLRFGDNLQAWLEQNARLPGNDCPQGKECEEKQ >gi|223713582|gb|ACDM01000016.1| GENE 71 75231 - 76220 1246 329 aa, chain + ## HITS:1 COG:ldhA KEGG:ns NR:ns ## COG: ldhA COG1052 # Protein_GI_number: 16129341 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1 329 1 329 329 668 100.0 0 MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANGCEAVCIFVNDDGSRPV LEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRI HRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAA ALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDS QAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLT AEALTSISQTTLQNLSNLEKGETCPNELV >gi|223713582|gb|ACDM01000016.1| GENE 72 76319 - 76753 201 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801140|ref|ZP_02195040.1| 50S ribosomal protein L25 [Vibrio campbellii AND4] # 1 144 1 147 147 82 29 2e-14 MRTTMKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKPVTSDKNPPEISF GEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELDNTISEMLKEGAQVD LTANQLTLATAKQTLTYKLADLMN >gi|223713582|gb|ACDM01000016.1| GENE 73 76750 - 77016 204 88 aa, chain - ## HITS:1 COG:STM1649 KEGG:ns NR:ns ## COG: STM1649 COG3042 # Protein_GI_number: 16764993 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Salmonella typhimurium LT2 # 38 88 1 51 51 63 92.0 1e-10 MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLD GTAIGMCALPNGKRCSEQSLAAGSCGSY >gi|223713582|gb|ACDM01000016.1| GENE 74 77290 - 80814 3378 1174 aa, chain + ## HITS:1 COG:ECs2000_1 KEGG:ns NR:ns ## COG: ECs2000_1 COG0674 # Protein_GI_number: 15831254 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Escherichia coli O157:H7 # 1 411 1 411 411 832 99.0 0 MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF GDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV PLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP PDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD >gi|223713582|gb|ACDM01000016.1| GENE 75 81181 - 82314 1240 377 aa, chain + ## HITS:1 COG:ompN KEGG:ns NR:ns ## COG: ompN COG3203 # Protein_GI_number: 16129338 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 377 1 377 377 620 100.0 1e-177 MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLG FKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMY DIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAS NGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL MSKGRDLHAAGGADNPAGVDDKDLVKYADIGATYYFNKNMSTYVDYKINLLDEDDSFYAA NGISTDDIVALGLVYQF >gi|223713582|gb|ACDM01000016.1| GENE 76 82455 - 82889 388 144 aa, chain + ## HITS:1 COG:ynaF KEGG:ns NR:ns ## COG: ynaF COG0589 # Protein_GI_number: 16129337 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1 144 25 168 168 259 100.0 1e-69 MNRTILVPIDISDSELTQRVISHVEEEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPA MDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDI TTYLLGSNAAAVVRHAECSVLVVR >gi|223713582|gb|ACDM01000016.1| GENE 77 83066 - 84001 962 311 aa, chain + ## HITS:1 COG:ydaO KEGG:ns NR:ns ## COG: ydaO COG0037 # Protein_GI_number: 16129305 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Escherichia coli K12 # 1 311 1 311 311 640 98.0 0 MSQNQEISKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILR NLQQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKT TCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDG KHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIE TMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGDLAFDREEIPLQPACWQPEEDENQL DELRLNVVEVK >gi|223713582|gb|ACDM01000016.1| GENE 78 84130 - 85428 1126 432 aa, chain - ## HITS:1 COG:dbpA KEGG:ns NR:ns ## COG: dbpA COG0513 # Protein_GI_number: 16129304 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1 432 26 457 457 845 100.0 0 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELAD QVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLD ALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAI EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVG QSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH VHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATL CIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGK IKGKTCRVRLLK >gi|223713582|gb|ACDM01000016.1| GENE 79 85981 - 86964 763 327 aa, chain - ## HITS:1 COG:ECs1926 KEGG:ns NR:ns ## COG: ECs1926 COG0598 # Protein_GI_number: 15831180 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Escherichia coli O157:H7 # 1 327 1 327 327 667 100.0 0 MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLHLNYVHHDSAQWLATTP LLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPDQLVAMRVYMDGRLIVSTR QRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSEFIEQLHDKIIDLEDNLLDQQ IPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDQRRRMQDIADRLGRGLDE IDACIARTGVMADEIAQVMQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGGGWQ FGFSIFCILLVVLIGGVALWLHRSKWL >gi|223713582|gb|ACDM01000016.1| GENE 80 87219 - 88451 923 410 aa, chain + ## HITS:1 COG:ydaM_3 KEGG:ns NR:ns ## COG: ydaM_3 COG2199 # Protein_GI_number: 16129302 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 241 410 1 170 170 346 100.0 6e-95 MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPK YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRS ANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEIN MLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDIT EQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHIND LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVA KVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA >gi|223713582|gb|ACDM01000016.1| GENE 81 88472 - 89035 660 187 aa, chain - ## HITS:1 COG:ydaL KEGG:ns NR:ns ## COG: ydaL COG2840 # Protein_GI_number: 16129301 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 187 1 187 187 378 100.0 1e-105 MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQ PLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLII HGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWE RHAKRSR >gi|223713582|gb|ACDM01000016.1| GENE 82 89365 - 90273 671 302 aa, chain - ## HITS:1 COG:ECs1923 KEGG:ns NR:ns ## COG: ECs1923 COG0583 # Protein_GI_number: 15831177 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 302 1 302 302 583 100.0 1e-166 MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVT LTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQ HPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHP AIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDF LSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYL QS >gi|223713582|gb|ACDM01000016.1| GENE 83 90449 - 91759 999 436 aa, chain + ## HITS:1 COG:ydaJ KEGG:ns NR:ns ## COG: ydaJ COG1473 # Protein_GI_number: 16129299 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Escherichia coli K12 # 1 436 6 441 441 778 100.0 0 MESLNQFVNSLAPKLSHWRRDFHHYAESGWVEFRTATLVAEELHQLGYSLALGREVVNES SRMGLPDEFTLQREFERARQQGALAQWIAAFEGGFTGIVATLDTGRPGPVMAFRVDMDAL DLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGLAHTLKQFESGLHGVIKLIFQ PAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTVVCGSDNFMATTKFDAHFTGTAA HAGAKPEDGHNALLAAAQATLALHAIAPHSEGASRVNVGVMQAGSGRNVVPASALLKVET RGASDVINQYVFDRAQQAIQGAATMYGVGVETRLMGAATASSPSPQWVAWLQSQAAQVAG VNQAIERVEAPAGSEDATLMMARVQQHQGQASYVVFGTQLAAGHHNEKFDFDEQVLAIAV ETLARTALNFPWTRGI >gi|223713582|gb|ACDM01000016.1| GENE 84 91759 - 93204 974 481 aa, chain + ## HITS:1 COG:abgB KEGG:ns NR:ns ## COG: abgB COG1473 # Protein_GI_number: 16129298 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Escherichia coli K12 # 1 481 1 481 481 962 100.0 0 MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGN IPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFA AAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFN TRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSY LPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVF ALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQ GRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPL K >gi|223713582|gb|ACDM01000016.1| GENE 85 93241 - 94767 1165 508 aa, chain + ## HITS:1 COG:abgT KEGG:ns NR:ns ## COG: abgT COG2978 # Protein_GI_number: 16129297 # Func_class: H Coenzyme transport and metabolism # Function: Putative p-aminobenzoyl-glutamate transporter # Organism: Escherichia coli K12 # 13 508 15 510 510 856 100.0 0 MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTTAILSAFGVSAKNPTDG TPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAGLAERVGLLPALMVKMASH VNARYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVGRHPVAGLLAAIAGVGCGFTA NLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMASSVVVLTIVGGLITDKIIEPRL GQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPQNGILRDPINHTVMPSPF IKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMF NWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSAIWSILAPIFVPMF MLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLI FLVVWLLMLLAWYLVGLPIGPGIYPRLS >gi|223713582|gb|ACDM01000016.1| GENE 86 94778 - 95293 367 171 aa, chain + ## HITS:1 COG:ogt KEGG:ns NR:ns ## COG: ogt COG0350 # Protein_GI_number: 16129296 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Escherichia coli K12 # 1 171 1 171 171 348 100.0 2e-96 MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDIHYRKEGYERISATNPG GLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPCGQVMHYGQLAEQLGRPGA ARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKEWLLRHEGYLLL >gi|223713582|gb|ACDM01000016.1| GENE 87 95488 - 96240 784 250 aa, chain + ## HITS:1 COG:ECs1915 KEGG:ns NR:ns ## COG: ECs1915 COG0664 # Protein_GI_number: 15831169 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 1 250 1 250 250 501 100.0 1e-142 MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFK AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETSM VCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRR FAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENNDALA QLAGHTRNVA >gi|223713582|gb|ACDM01000016.1| GENE 88 96392 - 97342 1042 316 aa, chain + ## HITS:1 COG:ECs1914 KEGG:ns NR:ns ## COG: ECs1914 COG0589 # Protein_GI_number: 15831168 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 316 1 316 316 634 100.0 0 MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDFSYEMTTLLSPDERTAM RQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQEVISGGHDLVLKMAHQHD RLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAVNLASEEPYHNALNEKLVKET IELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGINE NMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIK PDQYQTPVELDDEEDD >gi|223713582|gb|ACDM01000016.1| GENE 89 97392 - 97649 322 85 aa, chain - ## HITS:1 COG:no KEGG:ECSP_1858 NR:ns ## KEGG: ECSP_1858 # Name: ynaJ # Def: predicted inner membrane protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 85 1 85 85 132 100.0 4e-30 MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMI FVYSLVFTVLLAIPLGIYFLGGEEQ >gi|223713582|gb|ACDM01000016.1| GENE 90 97893 - 98924 784 343 aa, chain + ## HITS:1 COG:ECs1912 KEGG:ns NR:ns ## COG: ECs1912 COG0668 # Protein_GI_number: 15831166 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 343 1 343 343 672 100.0 0 MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHAVQFLIYTIIISAVGSI INYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSR IIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFS IGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTT IGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLNIMVYCFTKTTVWA EWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMDNITPPEQGR >gi|223713582|gb|ACDM01000016.1| GENE 91 98975 - 100588 1496 537 aa, chain - ## HITS:1 COG:mppA KEGG:ns NR:ns ## COG: mppA COG4166 # Protein_GI_number: 16129290 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 537 8 544 544 1065 100.0 0 MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQ VIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQ RLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNL TANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQ KVTFLPINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQ KGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEEL NAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTY IDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVK ARNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH >gi|223713582|gb|ACDM01000016.1| GENE 92 100925 - 101824 354 299 aa, chain - ## HITS:1 COG:ycjZ KEGG:ns NR:ns ## COG: ycjZ COG0583 # Protein_GI_number: 16129289 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 299 1 299 299 569 100.0 1e-162 MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP TEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH PEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV >gi|223713582|gb|ACDM01000016.1| GENE 93 101965 - 102663 704 232 aa, chain + ## HITS:1 COG:ycjY KEGG:ns NR:ns ## COG: ycjY COG1073 # Protein_GI_number: 16129288 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1 224 6 229 310 431 100.0 1e-121 MNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEK GFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAG YTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEY AIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLKLRYFAQP >gi|223713582|gb|ACDM01000016.1| GENE 94 102650 - 102907 259 85 aa, chain + ## HITS:1 COG:ECs1909 KEGG:ns NR:ns ## COG: ECs1909 COG1073 # Protein_GI_number: 15831163 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1 85 226 310 310 167 98.0 4e-42 MRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANH MDLYDGKAYVAEAISVLAPFFEETL >gi|223713582|gb|ACDM01000016.1| GENE 95 102978 - 103160 170 60 aa, chain + ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 46 9 54 220 94 100.0 3e-20 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR >gi|223713582|gb|ACDM01000016.1| GENE 96 103242 - 103970 422 242 aa, chain + ## HITS:1 COG:ECs1905 KEGG:ns NR:ns ## COG: ECs1905 COG2866 # Protein_GI_number: 15831159 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Escherichia coli O157:H7 # 1 242 21 262 262 489 100.0 1e-138 MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLILAGTHGDENSSVVTLS CALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAE ERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPLACIEDPRHSELGEWLAQAFE LPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLFAMANLLRWHPKDAIR PS >gi|223713582|gb|ACDM01000016.1| GENE 97 103945 - 104910 827 321 aa, chain - ## HITS:1 COG:ycjG KEGG:ns NR:ns ## COG: ycjG COG4948 # Protein_GI_number: 16129286 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 321 15 335 335 594 100.0 1e-170 MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGECTPYPRYGESDASVMA QIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDLAARRQQQSLADLIGITLPETVI TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMVAIRTAVPDATLIVDANES WRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADESCHTRSNLKALKGR YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVSFADLDG PTWLAVDVEPALQFTTGELHL >gi|223713582|gb|ACDM01000016.1| GENE 98 105029 - 105535 685 168 aa, chain + ## HITS:1 COG:ECs1903 KEGG:ns NR:ns ## COG: ECs1903 COG2077 # Protein_GI_number: 15831157 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1 168 1 168 168 310 100.0 9e-85 MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGV CAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGV AIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAVLKA >gi|223713582|gb|ACDM01000016.1| GENE 99 105579 - 107120 1510 513 aa, chain - ## HITS:1 COG:tyrR KEGG:ns NR:ns ## COG: tyrR COG3283 # Protein_GI_number: 16129284 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of aromatic amino acids metabolism # Organism: Escherichia coli K12 # 1 513 1 513 513 1014 100.0 0 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY PSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE >gi|223713582|gb|ACDM01000016.1| GENE 100 107268 - 108329 1247 353 aa, chain - ## HITS:1 COG:ycjF KEGG:ns NR:ns ## COG: ycjF COG3768 # Protein_GI_number: 16129283 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 353 1 353 353 660 100.0 0 MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDEAQEEEGQVEAVMDAAL RPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVALGGCAAGALIIGAGVGSVV TEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHE TQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLIN RIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIG AGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRRQLIGQVKETLQKGKTPSEK >gi|223713582|gb|ACDM01000016.1| GENE 101 108326 - 109723 1276 465 aa, chain - ## HITS:1 COG:ycjX KEGG:ns NR:ns ## COG: ycjX COG3106 # Protein_GI_number: 16129282 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1 465 1 465 465 962 100.0 0 MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSAVRE ERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGVSEIRLALRFKSNDSLLRH FKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLNGQRGEWSAKWRMMSEGLDP LAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVDTWG ESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQAFN DMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHANMVSLLQQLIQD AWQNAAFEGISMDCLGLASVQATTSGIIDVNGEKIPALRGNRLSDGAPLTVYPGEVPARL PGQAFWDKQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKLR >gi|223713582|gb|ACDM01000016.1| GENE 102 109879 - 110877 861 332 aa, chain + ## HITS:1 COG:ycjW KEGG:ns NR:ns ## COG: ycjW COG1609 # Protein_GI_number: 16129281 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 332 1 332 332 638 100.0 0 MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGF DAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQK MIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIE SGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLS QSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQ ELGQQSCELLFRLISGKPSPQNITVATHMTLK >gi|223713582|gb|ACDM01000016.1| GENE 103 110988 - 111893 1067 301 aa, chain - ## HITS:1 COG:no KEGG:B21_01307 NR:ns ## KEGG: B21_01307 # Name: ompG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 301 1 301 301 596 100.0 1e-169 MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAA NGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYV DEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQY TFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSN WDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYS F >gi|223713582|gb|ACDM01000016.1| GENE 104 111938 - 113020 1239 360 aa, chain - ## HITS:1 COG:ECs1897 KEGG:ns NR:ns ## COG: ECs1897 COG3839 # Protein_GI_number: 15831151 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 360 1 360 360 710 98.0 0 MAQLSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGD LLIDGKRMNDVPAKARNIAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQ ILGLREYLKRKPEALSGGQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISKL HQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQVGAPKTVYNQPANMFVSGFIGSPAM NFIRGTIDGDKFVTETLKLTIPEEKLAVLKTQESLHKPIVMGIRPEDIHPDAQEENNISA KISVAELTGAEFMLYTTVGGHELVVRAGALNDYHAGENITIHFDMTKCHFFDAETEIAIR >gi|223713582|gb|ACDM01000016.1| GENE 105 113034 - 113693 525 219 aa, chain - ## HITS:1 COG:ycjU KEGG:ns NR:ns ## COG: ycjU COG0637 # Protein_GI_number: 16129278 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1 219 1 219 219 425 100.0 1e-119 MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHG GKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLN APTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAI NASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV >gi|223713582|gb|ACDM01000016.1| GENE 106 113690 - 115888 1513 732 aa, chain - ## HITS:1 COG:ycjT KEGG:ns NR:ns ## COG: ycjT COG1554 # Protein_GI_number: 16129277 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Escherichia coli K12 # 1 732 24 755 755 1491 100.0 0 MAQGNGYLGLRASHEEDYTRQTRGMYLAGLYHRAGKGEINELVNLPDVVGMEIAINGEVF SLSHEAWQRELDFASGELRRNVVWRTSNGSGYTIASRRFVSADQLPLIALEITITPLDAD ASVLISTGIDATQTNHGRQHLDETQVRVFGQHLMQGSYTTQDGRSDVAISCCCKVSGDVQ QCYTAKERRLLQHTSAQLHAGETMTLQKLVWIDWRDDRQAALDEWGSASLRQLEMCAQQS YDQLLAASTENWRQWWQKRRITVNGGEAHDQQALDYALYHLRIMTPAHDERSSIAAKGLT GEGYKGHVFWDTEVFLLPFHLFSDPTVARSLLRYRWHNLPGAQEKARRNGWQGALFPWES ARSGEEETPEFAAINIRTGLRQKVASAQAEHHLVADIAWAVIQYWQTTGDESFIAHEGMA LLLETAKFWISRAVRVNDRLEIHDVIGPDEYTEHVNNNAYTSYMARYNVQQALNIARQFG CSDDAFIHRAEMFLKELWMPEIQPDGVLPQDDSFMAKPAINLAKYKAAAGKQTILLDYSR AEVNEMQILKQADVVMLNYMLPEQFSAASCLANLQFYEPRTIHDSSLSKAIHGIVAARCG LLTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIWLGAIQGFAGVSVRDGELHLNPAL PEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSLRLNGQLITVAEESVFCLGDFILP FNGTATKHQEDE >gi|223713582|gb|ACDM01000016.1| GENE 107 115954 - 116997 889 347 aa, chain - ## HITS:1 COG:ycjS KEGG:ns NR:ns ## COG: ycjS COG0673 # Protein_GI_number: 16129276 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 347 5 351 351 731 99.0 0 MTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDP QAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGK VLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLI DIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFH NGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMADDNR HLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL >gi|223713582|gb|ACDM01000016.1| GENE 108 117019 - 117807 938 262 aa, chain - ## HITS:1 COG:ycjR KEGG:ns NR:ns ## COG: ycjR COG1082 # Protein_GI_number: 16129275 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Escherichia coli K12 # 1 262 4 265 265 546 100.0 1e-155 MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACG GYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDG DRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDF YHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE GRIRAEDPAQAYRDSLAWLRTC >gi|223713582|gb|ACDM01000016.1| GENE 109 117826 - 118878 1229 350 aa, chain - ## HITS:1 COG:ycjQ KEGG:ns NR:ns ## COG: ycjQ COG1063 # Protein_GI_number: 16129274 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 350 1 350 350 700 100.0 0 MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEW QMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAV NNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRA GASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADAL QSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRI EETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF >gi|223713582|gb|ACDM01000016.1| GENE 110 118909 - 119751 973 280 aa, chain - ## HITS:1 COG:ycjP KEGG:ns NR:ns ## COG: ycjP COG0395 # Protein_GI_number: 16129273 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Escherichia coli K12 # 1 280 1 280 280 459 99.0 1e-129 MATNKRTLSRIGFYCELALFLIITLFPFFVMLMTSFKGAKEAISLHPTLLPQQWTLEHYV DIFNPMIFPFVDYFRNSLVVSVVSSVVAVFLGILGAYALSRLRFKGRMTINASFYTVYMF SGILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDG LNRLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFASIFLSSASNFTLPVGLNALFSTP DYIWGRMMAASLVTALPVVIMYALSERFIKSGLTAGGVKG >gi|223713582|gb|ACDM01000016.1| GENE 111 119738 - 120619 947 293 aa, chain - ## HITS:1 COG:ECs1890 KEGG:ns NR:ns ## COG: ECs1890 COG1175 # Protein_GI_number: 15831144 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 293 1 293 293 487 99.0 1e-138 MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNY VRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPS ISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFI SFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYL LTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK >gi|223713582|gb|ACDM01000016.1| GENE 112 120640 - 121932 1585 430 aa, chain - ## HITS:1 COG:ycjN KEGG:ns NR:ns ## COG: ycjN COG1653 # Protein_GI_number: 16129271 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 430 1 430 430 818 99.0 0 MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGI TVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEG AFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLND PANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLAAN TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTS LTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKA LGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQ KKLDELIEQH >gi|223713582|gb|ACDM01000016.1| GENE 113 121946 - 123625 1051 559 aa, chain - ## HITS:1 COG:ycjM KEGG:ns NR:ns ## COG: ycjM COG0366 # Protein_GI_number: 16129270 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1 559 10 568 568 1165 99.0 0 MKQKITDYLDEIYGGTFTATHLQKLVTRLESAKRLITQRRKKHWDESDVVLITYADQFHS NDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGEWQDIQQLG ECSHLMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQ MRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGT SCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPP LVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILELVEA LQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPA IYIQSILGSRNDYAGVEKIGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLR RSHNEFHPDNNFTIDTINSSVMRIQRSNADGNCLTGLFNVSKNIQHVNITNLHGRDLISE VDILGNEITLRPWQVMWIK >gi|223713582|gb|ACDM01000016.1| GENE 114 123838 - 124152 410 104 aa, chain - ## HITS:1 COG:pspE KEGG:ns NR:ns ## COG: pspE COG0607 # Protein_GI_number: 16129269 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 104 1 104 104 206 100.0 1e-53 MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKN DTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG >gi|223713582|gb|ACDM01000016.1| GENE 115 124227 - 124448 242 73 aa, chain - ## HITS:1 COG:no KEGG:ECDH10B_1424 NR:ns ## KEGG: ECDH10B_1424 # Name: pspD # Def: peripheral inner membrane phage-shock protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 73 1 73 73 112 100.0 6e-24 MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL SRAANKLAQRYKR >gi|223713582|gb|ACDM01000016.1| GENE 116 124457 - 124816 550 119 aa, chain - ## HITS:1 COG:ECs1883 KEGG:ns NR:ns ## COG: ECs1883 COG1983 # Protein_GI_number: 15831137 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 119 1 119 119 228 100.0 3e-60 MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIIL SFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREMERYVTSDTFTLRSRFRQL >gi|223713582|gb|ACDM01000016.1| GENE 117 124816 - 125040 311 74 aa, chain - ## HITS:1 COG:no KEGG:ECDH10B_1422 NR:ns ## KEGG: ECDH10B_1422 # Name: pspB # Def: phage shock protein B # Organism: E.coli_DH10B # Pathway: not_defined # 1 74 1 74 74 127 100.0 9e-29 MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLADEAKRMRERIQAL ESILDAEHPNWRDR >gi|223713582|gb|ACDM01000016.1| GENE 118 125094 - 125762 974 222 aa, chain - ## HITS:1 COG:ECs1881 KEGG:ns NR:ns ## COG: ECs1881 COG1842 # Protein_GI_number: 15831135 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 280 100.0 2e-75 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA EAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ >gi|223713582|gb|ACDM01000016.1| GENE 119 125929 - 126906 925 325 aa, chain + ## HITS:1 COG:pspF KEGG:ns NR:ns ## COG: pspF COG1221 # Protein_GI_number: 16129264 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1 325 6 330 330 641 100.0 0 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY NQKRAAELLGLTYHQFRALLKKHQI >gi|223713582|gb|ACDM01000016.1| GENE 120 127026 - 128291 1285 421 aa, chain - ## HITS:1 COG:goaG KEGG:ns NR:ns ## COG: goaG COG0160 # Protein_GI_number: 16129263 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli K12 # 1 421 1 421 421 798 100.0 0 MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPD LVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKI ARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ DSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEV QSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGN PLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAVEFND PQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS D >gi|223713582|gb|ACDM01000016.1| GENE 121 128329 - 129609 1513 426 aa, chain - ## HITS:1 COG:ordL KEGG:ns NR:ns ## COG: ordL COG0665 # Protein_GI_number: 16129262 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1 426 1 426 426 871 100.0 0 MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASR IGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFEGGEIIRERIKRYQIDCDY RPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGH IHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGD KVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGG GVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYM QGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSL RDRLGV >gi|223713582|gb|ACDM01000016.1| GENE 122 129611 - 131098 1688 495 aa, chain - ## HITS:1 COG:aldH KEGG:ns NR:ns ## COG: aldH COG1012 # Protein_GI_number: 16129261 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 495 1 495 495 981 100.0 0 MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDID RAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDD IPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGP ALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAI AFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQ VCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREG ESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLAND SQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL EKFTELKTIWISLEA >gi|223713582|gb|ACDM01000016.1| GENE 123 131373 - 131930 509 185 aa, chain - ## HITS:1 COG:ycjC KEGG:ns NR:ns ## COG: ycjC COG1396 # Protein_GI_number: 16129260 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 185 1 185 185 344 100.0 5e-95 MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYG LSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTT GERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH TPTTF >gi|223713582|gb|ACDM01000016.1| GENE 124 131957 - 132709 217 250 aa, chain - ## HITS:1 COG:ycjL KEGG:ns NR:ns ## COG: ycjL COG2071 # Protein_GI_number: 16129259 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Escherichia coli K12 # 1 250 9 258 258 490 100.0 1e-139 MNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDG IYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMAIINAALERRIPIFAICRGLQELVVAT GGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFWVNSLHG QGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITAC QHHIAEKQRL >gi|223713582|gb|ACDM01000016.1| GENE 125 132933 - 134351 1236 472 aa, chain + ## HITS:1 COG:ycjK KEGG:ns NR:ns ## COG: ycjK COG0174 # Protein_GI_number: 16129258 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Escherichia coli K12 # 1 472 27 498 498 971 100.0 0 METNIVEVENFVQQSEERRGSAFTQEVKRYLERYPNTQYVDVLLTDLNGCFRGKRIPVSS LKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVPVLGSLTPSAADPEFIGQM LLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVELEFYLLDRQRDAEGYLQPPCA PGTDDRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIPADGAVAEASPGQFEINLYHTDN VLEACDDALALKRLVRLMAEKHKMHATFMAKPYEEHAGSGMHIHISMQNNRGENVLSDAE GEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRRFQPGMYVPTQASWGHNNRTVALRIPC GDRHNHRVEYRVAGADANPYLVMAAIFAGILHGLDNELPLQEEVEGNGLEQEGLPFPIRQ SDALGEFIENDHLRRYLGERFCHVYHACKNDELLQFERLITETEIEWMLKNA >gi|223713582|gb|ACDM01000016.1| GENE 126 134654 - 136039 1569 461 aa, chain + ## HITS:1 COG:ycjJ KEGG:ns NR:ns ## COG: ycjJ COG0531 # Protein_GI_number: 16129257 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 461 19 479 479 860 99.0 0 MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTFGIVSGISDGHVPASYL LALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMVGWSSLLDYLFLPMINVLL AKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFNTLFVLVQISIMVVFIFLVVQ ELHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSFLGFDAVTTLSEETPDAARVIPK AIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAALPEIALYVGGKLFQSIFLCTTFVN TLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTPALNVIMVGIVALSALFFDLV TATALINFGALVAFTFVNLSVFNHFWRRKGMNKSWKDHFHYLLMPLVGALTVGVLWVNLE STSLTLGLVWASLGGAYLWYLIRRYRKVPLYDGDRTPVSET >gi|223713582|gb|ACDM01000016.1| GENE 127 136173 - 136418 296 81 aa, chain + ## HITS:1 COG:no KEGG:Z2493 NR:ns ## KEGG: Z2493 # Name: ymjA # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 1 81 1 81 81 141 98.0 9e-33 MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAE AGINPVRIDEIAEFLNQWGNE >gi|223713582|gb|ACDM01000016.1| GENE 128 136731 - 138374 1412 547 aa, chain + ## HITS:1 COG:sapA KEGG:ns NR:ns ## COG: sapA COG4166 # Protein_GI_number: 16129255 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 547 1 547 547 1076 100.0 0 MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDT LAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNA DDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFL WHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG KPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAYL AFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYN PAKSREQLKSLGLENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRF QEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALS SQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVYREK QDEVKKP >gi|223713582|gb|ACDM01000016.1| GENE 129 138371 - 139336 588 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 1 318 1 317 320 231 35 2e-59 MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSS INGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRHKWQDNLINAIALLGFS IPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDAWLSDSPWRDEMIMSAI RHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVCGSLVIIVNV ISDILGAMANPLKHKEWYALR >gi|223713582|gb|ACDM01000016.1| GENE 130 139323 - 140213 928 296 aa, chain + ## HITS:1 COG:sapC KEGG:ns NR:ns ## COG: sapC COG4171 # Protein_GI_number: 16129253 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Escherichia coli K12 # 1 296 1 296 296 535 100.0 1e-152 MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLG YQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFA GATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSM VHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLG AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAIIAGVE >gi|223713582|gb|ACDM01000016.1| GENE 131 140213 - 141205 468 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 14 321 31 324 329 184 37 2e-45 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN WRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWT YKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL IADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET APSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPY AQRECIVTPRLTGAKNHLYACHFPLNMEKE >gi|223713582|gb|ACDM01000016.1| GENE 132 141195 - 142013 448 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 256 3 263 329 177 35 4e-43 RKSEMIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTL AKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLR LNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADE ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTA DVLASPLHELTKRLIAGHFGEALTADAWRKDR >gi|223713582|gb|ACDM01000016.1| GENE 133 142207 - 142434 81 75 aa, chain + ## HITS:1 COG:ycjD KEGG:ns NR:ns ## COG: ycjD COG2852 # Protein_GI_number: 16129250 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 75 43 117 117 151 98.0 3e-37 MGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETV LENILQELNRRSPSP >gi|223713582|gb|ACDM01000016.1| GENE 134 142802 - 143590 1104 262 aa, chain + ## HITS:1 COG:ECs1861 KEGG:ns NR:ns ## COG: ECs1861 COG0623 # Protein_GI_number: 15831115 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 506 100.0 1e-143 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIV LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS SYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPE GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI SGEVVHVDGGFSIAAMNELELK >gi|223713582|gb|ACDM01000016.1| GENE 135 143734 - 144861 403 375 aa, chain + ## HITS:1 COG:yciW_1 KEGG:ns NR:ns ## COG: yciW_1 COG4950 # Protein_GI_number: 16129248 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 210 27 236 236 423 100.0 1e-118 MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPA RVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRE SNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATF QAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEIL SLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMR KGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGL CGWINRLKIALGETY >gi|223713582|gb|ACDM01000016.1| GENE 136 144929 - 146863 2149 644 aa, chain + ## HITS:1 COG:ECs1859 KEGG:ns NR:ns ## COG: ECs1859 COG4776 # Protein_GI_number: 15831113 # Func_class: K Transcription # Function: Exoribonuclease II # Organism: Escherichia coli O157:H7 # 1 644 1 644 644 1281 99.0 0 MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA >gi|223713582|gb|ACDM01000016.1| GENE 137 147098 - 149083 1138 661 aa, chain + ## HITS:1 COG:yciR_3 KEGG:ns NR:ns ## COG: yciR_3 COG2200 # Protein_GI_number: 16129246 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 401 661 1 261 261 530 100.0 1e-150 MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVI TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG NAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD SITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAI LSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGI ALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALEND QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV RQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIEND ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR A >gi|223713582|gb|ACDM01000016.1| GENE 138 149231 - 149404 233 57 aa, chain + ## HITS:1 COG:no KEGG:EC55989_1446 NR:ns ## KEGG: EC55989_1446 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 57 15 71 71 105 100.0 4e-22 MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVAESTPDIPKAPWEI >gi|223713582|gb|ACDM01000016.1| GENE 139 149494 - 150243 631 249 aa, chain + ## HITS:1 COG:ECs1857 KEGG:ns NR:ns ## COG: ECs1857 COG1349 # Protein_GI_number: 15831111 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 249 1 249 249 480 100.0 1e-135 MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSD DVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSY IAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRD MMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS KLTVHVVDI >gi|223713582|gb|ACDM01000016.1| GENE 140 150512 - 150730 356 72 aa, chain + ## HITS:1 COG:no KEGG:G2583_1624 NR:ns ## KEGG: G2583_1624 # Name: osmB # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 72 1 72 72 74 100.0 1e-12 MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGA AVGGVIGHQVGK >gi|223713582|gb|ACDM01000016.1| GENE 141 150856 - 151182 511 108 aa, chain - ## HITS:1 COG:yciH KEGG:ns NR:ns ## COG: yciH COG0023 # Protein_GI_number: 16129243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 1 (eIF-1/SUI1) and related proteins # Organism: Escherichia coli K12 # 1 108 2 109 109 177 100.0 5e-45 MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAEL TKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLAGG >gi|223713582|gb|ACDM01000016.1| GENE 142 151182 - 151919 660 245 aa, chain - ## HITS:1 COG:pyrF KEGG:ns NR:ns ## COG: pyrF COG0284 # Protein_GI_number: 16129242 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Escherichia coli K12 # 1 245 1 245 245 456 100.0 1e-128 MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRE LQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKD APLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVF GQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS LQRSA >gi|223713582|gb|ACDM01000016.1| GENE 143 152113 - 153282 1241 389 aa, chain - ## HITS:1 COG:ECs1853 KEGG:ns NR:ns ## COG: ECs1853 COG2956 # Protein_GI_number: 15831107 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosaminyl transferase # Organism: Escherichia coli O157:H7 # 10 389 10 389 389 721 100.0 0 MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIA HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC GFTAYTLYWHCPSCRAWSTIKPIRGLDGL >gi|223713582|gb|ACDM01000016.1| GENE 144 153289 - 153597 201 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein [Haemophilus influenzae R2866] # 1 89 2 90 97 82 35 2e-14 MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLIC GLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE >gi|223713582|gb|ACDM01000016.1| GENE 145 153746 - 154510 498 254 aa, chain - ## HITS:1 COG:ECs1851 KEGG:ns NR:ns ## COG: ECs1851 COG0671 # Protein_GI_number: 15831105 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli O157:H7 # 1 254 1 254 254 446 100.0 1e-125 MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLIL FGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDE FYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWP RRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPP AEENREIAQREQES >gi|223713582|gb|ACDM01000016.1| GENE 146 154680 - 155270 710 196 aa, chain + ## HITS:1 COG:ECs1850 KEGG:ns NR:ns ## COG: ECs1850 COG0807 # Protein_GI_number: 15831104 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Escherichia coli O157:H7 # 1 196 1 196 196 403 100.0 1e-112 MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDAL FSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKIRAYALQDQGYDTVEANHQ LGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNE HYLDTKAEKMGHLLNK >gi|223713582|gb|ACDM01000016.1| GENE 147 155334 - 158009 2426 891 aa, chain - ## HITS:1 COG:acnA KEGG:ns NR:ns ## COG: acnA COG1048 # Protein_GI_number: 16129237 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1 891 1 891 891 1798 99.0 0 MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKVLLENLLRWQDGNSVTE EDIHALAGWLKNAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPL SPVDLVIDHSVTVDRFGDDEAFEENVRLEMERNHERYVFLKWGKQAFSRFSVVPPGTGIC HQVNLEYLGKAVWSELQDGEWIAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ PVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLRKHGVVGKFVEFYGDGLDSLPLADR ATIANMSPEYGATCGFFPIDAVTLDYMRLSGRSEDQVELVEKYAKAQGMWRNPGDEPIFT STLELDMNDVEASLAGPKRPQDRVALPDVPKAFAASNELEVNATHKDRQPVDYVMNGHQY QLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYL AKAKLTPYLDELGFNLVGYGCTTCIGNSGPLPDPIETAIKKGDLTVGAVLSGNRNFEGRI HPLVKTNWLASPPLVVAYALAGNMNINLASEPIGHDRKGDPVYLKDIWPSAQEIARAVEQ VSTEMFRKEYAEVFEGTAEWKGINVTRSDTYGWQEDSTYIRLSPFFDEMQATPAPVEDIH GARILAMLGDSVTTDHISPAGSIKPDSPAGRYLQGRGVERKDFNSYGSRRGNHEVMMRGT FANIRIRNEMVPGVEGGMTRHLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDW AAKGPRLLGIRVVIAESFERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQN LQPGATVPVTLTRADGSQEVVPCRCRIDTATELTYYQNDGILHYVIRNMLK >gi|223713582|gb|ACDM01000016.1| GENE 148 158173 - 158268 56 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINTNMKYWSWMGAFSLSMLFWAELLWIITH >gi|223713582|gb|ACDM01000016.1| GENE 149 158382 - 158549 141 55 aa, chain - ## HITS:1 COG:no KEGG:SSON_1865 NR:ns ## KEGG: SSON_1865 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 55 5 59 59 80 100.0 1e-14 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ >gi|223713582|gb|ACDM01000016.1| GENE 150 158552 - 158680 63 42 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1434 NR:ns ## KEGG: EC55989_1434 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 42 13 54 54 73 100.0 2e-12 MPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG >gi|223713582|gb|ACDM01000016.1| GENE 151 159011 - 159985 888 324 aa, chain - ## HITS:1 COG:ECs1847 KEGG:ns NR:ns ## COG: ECs1847 COG0583 # Protein_GI_number: 15831101 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 324 1 324 324 647 100.0 0 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV DAAVALRSNEEIEVMFKDIKLPEK >gi|223713582|gb|ACDM01000016.1| GENE 152 160195 - 162792 2871 865 aa, chain - ## HITS:1 COG:topA_1 KEGG:ns NR:ns ## COG: topA_1 COG0550 # Protein_GI_number: 16129235 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Escherichia coli K12 # 1 592 1 592 592 1167 100.0 0 MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA WHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN SQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF RLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEA SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY DFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKR RCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYV SSEKDGKATGWSAFYVDGKWVEGKK >gi|223713582|gb|ACDM01000016.1| GENE 153 163172 - 163423 417 83 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_1292 NR:ns ## KEGG: ECIAI1_1292 # Name: yciN # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 83 1 83 83 158 100.0 7e-38 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK STAVFNMFKHLAHVLSEKYHLVD >gi|223713582|gb|ACDM01000016.1| GENE 154 163459 - 164508 1047 349 aa, chain - ## HITS:1 COG:sohB KEGG:ns NR:ns ## COG: sohB COG0616 # Protein_GI_number: 16129233 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Escherichia coli K12 # 1 349 1 349 349 594 100.0 1e-169 MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMKEELAA ALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSL REEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGG YMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENT EEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVDEINTSDEV ILSLMEGREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQKPLM >gi|223713582|gb|ACDM01000016.1| GENE 155 164728 - 165486 719 252 aa, chain + ## HITS:1 COG:yciK KEGG:ns NR:ns ## COG: yciK COG1028 # Protein_GI_number: 16129232 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 252 1 252 252 496 100.0 1e-140 MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET GRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLA DEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTF DAQPGRKPGISQ >gi|223713582|gb|ACDM01000016.1| GENE 156 165483 - 166073 707 196 aa, chain + ## HITS:1 COG:btuR KEGG:ns NR:ns ## COG: btuR COG2109 # Protein_GI_number: 16129231 # Func_class: H Coenzyme transport and metabolism # Function: ATP:corrinoid adenosyltransferase # Organism: Escherichia coli K12 # 1 196 1 196 196 389 100.0 1e-108 MSDERYQQRQQRVKEKVDARVAQAQDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVG VVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWDTQNRESDTAACREVWQHAKRMLADSS LDMVLLDELTYMVAYDYLPLEEVVQALNERPHQQTVIITGRGCHRDILELADTVSELRPV KHAFDAGVKAQIGIDY >gi|223713582|gb|ACDM01000016.1| GENE 157 166113 - 166988 1169 291 aa, chain - ## HITS:1 COG:yciL KEGG:ns NR:ns ## COG: yciL COG1187 # Protein_GI_number: 16129230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1 291 1 291 291 541 100.0 1e-154 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG >gi|223713582|gb|ACDM01000016.1| GENE 158 167199 - 169094 750 631 aa, chain - ## HITS:1 COG:no KEGG:JW5197 NR:ns ## KEGG: JW5197 # Name: yciQ # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 615 1 615 631 1275 100.0 0 MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQA RNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQ RFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFS EIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSH LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVY DDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKG DKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGW AGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYI NVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAA THSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTH LSCGANTSLLGRSYSGGGAGGGAGGGGGGGW >gi|223713582|gb|ACDM01000016.1| GENE 159 169122 - 169742 778 206 aa, chain - ## HITS:1 COG:ECs1839 KEGG:ns NR:ns ## COG: ECs1839 COG0009 # Protein_GI_number: 15831093 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Escherichia coli O157:H7 # 1 206 13 218 218 419 100.0 1e-117 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK PTTVIDLTDDTPVVVREGVGDVKPFL >gi|223713582|gb|ACDM01000016.1| GENE 160 169739 - 170620 382 293 aa, chain - ## HITS:1 COG:yciV KEGG:ns NR:ns ## COG: yciV COG0613 # Protein_GI_number: 16129227 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Escherichia coli K12 # 1 293 1 293 293 582 100.0 1e-166 MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISR SGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEK AQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTI EQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNERTQLA ALARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPQNTTEREL >gi|223713582|gb|ACDM01000016.1| GENE 161 170894 - 172456 1603 520 aa, chain + ## HITS:1 COG:ECs1836 KEGG:ns NR:ns ## COG: ECs1836 COG0147 # Protein_GI_number: 15831090 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Escherichia coli O157:H7 # 1 520 1 520 520 1020 98.0 0 MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADIDSKDDLKSLLLVDSALR ITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRVLRFPPVSPLLDEDARLCS LSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFEDLPQLSAENNCPDFCFYLAET LMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQLTEAAPPLPVVSVPHMRCECNQ SDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDND FTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELS EHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRAC MNMGTLSGAPKVRAMQLIAEAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVENGIATV QAGAGVVLDSVPQSEADETRNKARAVLRAIATAHHAQETF >gi|223713582|gb|ACDM01000016.1| GENE 162 172456 - 174051 1631 531 aa, chain + ## HITS:1 COG:trpD_2 KEGG:ns NR:ns ## COG: trpD_2 COG0547 # Protein_GI_number: 16129224 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Escherichia coli K12 # 197 531 1 335 335 601 99.0 1e-171 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGA RLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQESHLLFSAVVRGELKPEQLAAALV SMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAAC GLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHA MPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGG MDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKG DAAHEAAVAANVAMLMRLHGHEDLQANAQTVLEVLRSGSAYDRVTALAARG >gi|223713582|gb|ACDM01000016.1| GENE 163 174055 - 175413 1184 452 aa, chain + ## HITS:1 COG:trpC_1 KEGG:ns NR:ns ## COG: trpC_1 COG0134 # Protein_GI_number: 16129223 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Escherichia coli K12 # 1 253 2 254 254 505 100.0 1e-143 MQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGARTAFILECKKASPS KGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDP YQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKV VGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALM AHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVM AAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALS VGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTG CAGLDFNSAVESQPGIKDARLLASVFQTLRAY >gi|223713582|gb|ACDM01000016.1| GENE 164 175425 - 176618 1322 397 aa, chain + ## HITS:1 COG:trpB KEGG:ns NR:ns ## COG: trpB COG0133 # Protein_GI_number: 16129222 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Escherichia coli K12 # 1 397 1 397 397 796 100.0 0 MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALT KCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASA LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS YETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIACVGGGSNAIGM FADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTEDGQIEESYSI SAGLDFPSVGPQHAYLNSTGRADYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALK MMRENPDKEQLLVVNLSGRGDKDIFTVHDILKARGEI >gi|223713582|gb|ACDM01000016.1| GENE 165 176618 - 177424 392 268 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1 249 1 248 263 155 35 1e-36 MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLAD GPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVFNKGIDEFYAQCEK VGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRA GVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKI IEQHINEPEKMLAALKVFVQPMKAATRS >gi|223713582|gb|ACDM01000016.1| GENE 166 177805 - 177984 220 59 aa, chain + ## HITS:1 COG:STM1728 KEGG:ns NR:ns ## COG: STM1728 COG3729 # Protein_GI_number: 16765072 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1 55 1 55 60 58 89.0 4e-09 MAEHRGGSGNFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGKS >gi|223713582|gb|ACDM01000016.1| GENE 167 178070 - 178570 616 166 aa, chain + ## HITS:1 COG:yciF KEGG:ns NR:ns ## COG: yciF COG3685 # Protein_GI_number: 16129219 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 166 1 166 166 234 100.0 4e-62 MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQ VVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTL ATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAENKA >gi|223713582|gb|ACDM01000016.1| GENE 168 178616 - 179122 646 168 aa, chain + ## HITS:1 COG:yciE KEGG:ns NR:ns ## COG: yciE COG3685 # Protein_GI_number: 16129218 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 168 1 168 168 309 100.0 1e-84 MNRIEHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETIL DRNDISRSVIKDSMSKMAALGQSIGGIFPSDEIVKGSISGYVFEQFEIACYTSLLAAAKN AGDTASIPTIEAILNEEKQMADWLIQNIPQTTEKFLIRSETDGVEAKK >gi|223713582|gb|ACDM01000016.1| GENE 169 179182 - 179289 56 35 aa, chain - ## HITS:1 COG:ompW KEGG:ns NR:ns ## COG: ompW COG3047 # Protein_GI_number: 16129217 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein W # Organism: Escherichia coli K12 # 1 35 178 212 212 75 100.0 2e-14 MDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF Prediction of potential genes in microbial genomes Time: Mon May 16 18:45:51 2011 Seq name: gi|223713581|gb|ACDM01000017.1| Escherichia sp. 4_1_40B cont1.17, whole genome shotgun sequence Length of sequence - 14596 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 10, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 486 236 ## COG5525 Bacteriophage tail assembly protein 2 1 Op 2 4/0.000 - CDS 486 - 1301 218 ## COG5525 Bacteriophage tail assembly protein 3 1 Op 3 . - CDS 1231 - 1779 488 ## COG4220 Phage DNA packaging protein, Nu1 subunit of terminase - Prom 1865 - 1924 7.2 + Prom 2108 - 2167 7.1 4 2 Tu 1 . + CDS 2191 - 3258 242 ## EC55989_1387 hypothetical protein 5 3 Tu 1 . - CDS 3200 - 3820 149 ## EC55989_1386 putative phage regulatory protein - Prom 3857 - 3916 6.6 + Prom 3630 - 3689 2.7 6 4 Tu 1 . + CDS 3764 - 3973 58 ## - Term 4153 - 4201 4.3 7 5 Op 1 1/0.000 - CDS 4242 - 5276 588 ## COG2801 Transposase and inactivated derivatives - TRNA 6252 - 6328 86.1 # Arg TCT 0 0 - TRNA 6426 - 6501 88.5 # Met CAT 0 0 8 5 Op 2 . - CDS 6551 - 7600 649 ## COG0863 DNA modification methylase 9 6 Tu 1 . - CDS 7751 - 7948 158 ## ECO26_1481 hypothetical protein - Prom 8085 - 8144 2.1 - Term 8093 - 8138 6.2 10 7 Op 1 . - CDS 8175 - 8996 352 ## SbBS512_E1442 antitermination protein Q 11 7 Op 2 . - CDS 8993 - 9373 289 ## COG4570 Holliday junction resolvase 12 7 Op 3 . - CDS 9374 - 10357 410 ## APECO1_1034 hypothetical protein - Term 10781 - 10806 -0.5 13 8 Tu 1 . - CDS 10876 - 11088 194 ## ECO103_2268 prophage maintenance protein 14 9 Op 1 . - CDS 11649 - 12650 235 ## ECS88_1342 conserved hypothetical protein from phage origin 15 9 Op 2 . - CDS 12666 - 13688 439 ## ECS88_1341 hypothetical protein - Prom 13780 - 13839 2.2 16 10 Tu 1 . - CDS 14290 - 14472 95 ## COG3039 Transposase and inactivated derivatives, IS5 family Predicted protein(s) >gi|223713581|gb|ACDM01000017.1| GENE 1 3 - 486 236 161 aa, chain - ## HITS:1 COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 50 161 103 214 247 214 95.0 6e-56 MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNS DEASWHLVEDHRGKTVYDVASGDELFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEA EKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEET >gi|223713581|gb|ACDM01000017.1| GENE 2 486 - 1301 218 271 aa, chain - ## HITS:1 COG:STM2608 KEGG:ns NR:ns ## COG: STM2608 COG5525 # Protein_GI_number: 16765929 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Salmonella typhimurium LT2 # 15 86 1 72 643 113 70.0 4e-25 MLQLRPVKTWAGGSMISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKESSY TPGRWETLPFQVGIMNCMGNDLIRTVMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASAS STDLGTKTTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYT AISNLSAGIMSTTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAI GSHGHTITVNAAGNAENTVKNIAFNYIVRLA >gi|223713581|gb|ACDM01000017.1| GENE 3 1231 - 1779 488 182 aa, chain - ## HITS:1 COG:STM2609 KEGG:ns NR:ns ## COG: STM2609 COG4220 # Protein_GI_number: 16765930 # Func_class: L Replication, recombination and repair # Function: Phage DNA packaging protein, Nu1 subunit of terminase # Organism: Salmonella typhimurium LT2 # 1 164 1 164 164 236 75.0 2e-62 MKVNKKRLAEIFNVDPRTIERWQSQGLPCASKGSKGIESVFDTAMAIQWYAQRETDIENE KLRKELDDLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRAE GS >gi|223713581|gb|ACDM01000017.1| GENE 4 2191 - 3258 242 355 aa, chain + ## HITS:1 COG:no KEGG:EC55989_1387 NR:ns ## KEGG: EC55989_1387 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 355 1 355 355 703 99.0 0 MSQHQYYPQLKWKPAEYESLMLLDQTTLSGFTPIITIPDIDWDYENECYKKSLSSYLSDF GINLAASWKANRPVLLDVKYLDKHGSSRHHPLDMCIQDARVNGKEIIPVVSPAYSTNYIH AVQRNLINGLAISITPQTWHQFTSLVNHLNIHPSLIDVIIDFGDIQNATDSLKQQALSMV NTLSGQAPWRNLILSSTAYPASQAGIPQHQVHHIPRHEYDLWMYVVQNFSNGRTPSFSDY PTASSTITSVDPRFMSQYVSVRYSNDTSWIFVKGTAVKGNGWGQTKNLCTTLVSSPEYQV FGSKFSWGDDYIYQRSLGANKSGGSKEWRKVAHTHHITLVVRQLYWLAQTQPAKP >gi|223713581|gb|ACDM01000017.1| GENE 5 3200 - 3820 149 206 aa, chain - ## HITS:1 COG:no KEGG:EC55989_1386 NR:ns ## KEGG: EC55989_1386 # Name: not_defined # Def: putative phage regulatory protein # Organism: E.coli_55989 # Pathway: not_defined # 1 206 1 206 206 401 99.0 1e-111 MKDQDVRFAVHHKLLKESHLDPDCLVVDEFSISLGASRADIAVINGVIHGYELKSEYDSL ERLPLQIKHYSSVMDKVTLVVAEKHLEGALKLIPGWWGVKTVSVGPKGAILIKHMRGEKL NRNHDTLMLAQLLWKDECIDVLERWGYSKGIKSKPRFELWNIIAENIPIANLRLEVRTAL KKRVGWKVKAWQAESAPTNKAVSRLT >gi|223713581|gb|ACDM01000017.1| GENE 6 3764 - 3973 58 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRFFQKLMMHREPNILIFHDFSLLPPLLNYSALHFTAFERFDHFNHKMLICSNKIHSHTT MVITFCLEN >gi|223713581|gb|ACDM01000017.1| GENE 7 4242 - 5276 588 344 aa, chain - ## HITS:1 COG:ECs2262 KEGG:ns NR:ns ## COG: ECs2262 COG2801 # Protein_GI_number: 15831516 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 334 1 334 616 598 85.0 1e-171 MAFKHYDVVRAASPSDLAKRLTQKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATE PEWYYVIVLAGQSNAMAYGEGLPLPDSYDAPHPRIKQLARRNTVTPGGEVCVFNDIIPAD HCLHDVQDMSTINHPRADLSKGQYGCVGQGLHIAKKLLPYIPNNAGILLVPCCRGGSAFT QGTEGTFSESTGASQDSARWGVGKPLYQDLLFRTKAALQKNPKNVLLAICWMQGEFDMTN ASYAQQPAAFLAMVQQFRADLAGLAAQCHGGSPASVPWICGDTTYAWKQEHGTQYEVVYG AYKGKESQQIYFVPFMTDGSGVNTPTNNPSEDPDTCRSTSGRSA >gi|223713581|gb|ACDM01000017.1| GENE 8 6551 - 7600 649 349 aa, chain - ## HITS:1 COG:ECs1780 KEGG:ns NR:ns ## COG: ECs1780 COG0863 # Protein_GI_number: 15831034 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli O157:H7 # 1 349 1 349 352 698 93.0 0 MLNTVKISSCELINADCLEFIRSLPENSVDLIVTDPPYFKVKPEGWDNQWKGDDDYLKWL DQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNHIIWAKPSGRWNGCNKESL RAYFPATERILFAEHYQGPYRPKDAGYAAKGSALKQHVMAPLISYFRDARAALGITAKQI ADATGKKNMVSHWFSASQWQLPNESDYLKLQSLFARVAEEKHQRGELEKPHHQLVDTYTS LNRQYVELQSEYKHLRRYFGVTAQVPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASS RPGDLVADFFMGSGSTVKAALALGRRAIGVELETGRFEQTVREVQDLIV >gi|223713581|gb|ACDM01000017.1| GENE 9 7751 - 7948 158 65 aa, chain - ## HITS:1 COG:no KEGG:ECO26_1481 NR:ns ## KEGG: ECO26_1481 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 65 42 106 106 123 100.0 2e-27 MLKQQDMTETARVVFNELSVTEPATVGEIAQNTYLSRERCQLILTQLVMAGLADYQFGCY RRLPQ >gi|223713581|gb|ACDM01000017.1| GENE 10 8175 - 8996 352 273 aa, chain - ## HITS:1 COG:no KEGG:SbBS512_E1442 NR:ns ## KEGG: SbBS512_E1442 # Name: not_defined # Def: antitermination protein Q # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1 273 1 273 273 531 100.0 1e-150 MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISM NDRERATELLTEYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCC YGEKFIESVVFTNKVQYPDGKPPVWAKCTKGVYPSYWEEWKKVREVVKVACPECGGKGEV STACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGCERLPSTEAFNAICKVTSAITLD TWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR >gi|223713581|gb|ACDM01000017.1| GENE 11 8993 - 9373 289 126 aa, chain - ## HITS:1 COG:ECs1523 KEGG:ns NR:ns ## COG: ECs1523 COG4570 # Protein_GI_number: 15830777 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 4 126 2 124 124 227 99.0 4e-60 MTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKI IAEPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPVSGGRLGVKIYPIML EGQVKK >gi|223713581|gb|ACDM01000017.1| GENE 12 9374 - 10357 410 327 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1034 NR:ns ## KEGG: APECO1_1034 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 327 25 351 351 662 99.0 0 MPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSD WLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAW MIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDI VPGEQTATSILKQRTKNLAPLPHAHQQNPPQEKTVVSIAVDPESPAQYLQRQKSQREEMP VYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHSELHAGVKDFE EKHGSQLLLLIRFLMHARNSGVLKWKA >gi|223713581|gb|ACDM01000017.1| GENE 13 10876 - 11088 194 70 aa, chain - ## HITS:1 COG:no KEGG:ECO103_2268 NR:ns ## KEGG: ECO103_2268 # Name: not_defined # Def: prophage maintenance protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 70 1 70 70 114 98.0 1e-24 MNGKSRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIMTALVTRKDLCEVRIRTGQTEV AVFTAYEPEE >gi|223713581|gb|ACDM01000017.1| GENE 14 11649 - 12650 235 333 aa, chain - ## HITS:1 COG:no KEGG:ECS88_1342 NR:ns ## KEGG: ECS88_1342 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_S88 # Pathway: not_defined # 1 333 1 333 333 696 99.0 0 MDIRTRKTKFLESLDSTEVIRKAVSLAIDCIIDNHNSNEDTPLVITSYDDLCRIQVLNYV QEFCEAAFPDMDEYYFSPNILRINGKTSEEACINLIKLLRSTKGMLFWSDAPSWFASLPD GLFHVVNIDQKIVTRGLNKKNSKPTIINKDYSVDTLLSELFLNGAHMEQPNVHNVSEGNM KFYDECHAGLIRPIPAPIGASYDEEITINSPDWQKLACVALRRYQSKECHDGMQWDTTDH GWTDVIAYPFVEEIQSMDNSGYRQCLVGLVTINNSNANSPYLSTVWIHLFYRRRGLLSKL WPKLQELYGSNFEIERPNENMKAFLKSAKHADY >gi|223713581|gb|ACDM01000017.1| GENE 15 12666 - 13688 439 340 aa, chain - ## HITS:1 COG:no KEGG:ECS88_1341 NR:ns ## KEGG: ECS88_1341 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 340 31 370 370 650 100.0 0 MPCISLWYNSCAIDTRERYIVKIVFEVNGKKVPLKSLKYISKKDQLEVMKNWFFENFEDP ANACPYESREGGYAYIYGGPYDASEELQSIFGQYVKSEYIEELVDELQTQCFDWSGNSNN IDDWYDDDIYDAVTSSGNPYLKFIDNIDKIKKLAKDKTEQQQKNHLLSLLYTNVITALET LYVELFINSIEKDDVYIANCIEKGKTEFKVSKDIAALPFKGEPIEKIRGELIRSIKEHLI SASWHSTKKVIDRYEATFDIKVQKDCPIEAIELATLNRNHLVHRGGKDKEGNLVVITDQD LETLIENASNLAIMLYNSLNVATNKTTILQPDDKPFIHEF >gi|223713581|gb|ACDM01000017.1| GENE 16 14290 - 14472 95 60 aa, chain - ## HITS:1 COG:yi52_g5 KEGG:ns NR:ns ## COG: yi52_g5 COG3039 # Protein_GI_number: 16129331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Escherichia coli K12 # 1 60 267 326 326 117 98.0 7e-27 MKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ Prediction of potential genes in microbial genomes Time: Mon May 16 18:46:33 2011 Seq name: gi|223713580|gb|ACDM01000018.1| Escherichia sp. 4_1_40B cont1.18, whole genome shotgun sequence Length of sequence - 35023 bp Number of predicted genes - 41, with homology - 41 Number of transcription units - 24, operones - 9 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 337 - 468 57 ## ECBD_2079 protein of unknown function DUF977 3 1 Op 3 . - CDS 509 - 1393 372 ## E2348C_1395 predicted replication protein - Term 1402 - 1446 2.1 4 2 Op 1 . - CDS 1491 - 1916 442 ## ECH74115_2277 hypothetical protein 5 2 Op 2 . - CDS 1900 - 2181 154 ## E2348C_1393 hypothetical protein - Prom 2201 - 2260 5.2 + Prom 2117 - 2176 2.5 6 3 Tu 1 . + CDS 2282 - 2701 250 ## COG1396 Predicted transcriptional regulators + Term 2744 - 2794 13.1 + Prom 2732 - 2791 5.1 7 4 Op 1 . + CDS 2886 - 3119 150 ## E2348C_1391 hypothetical protein 8 4 Op 2 . + CDS 3131 - 3532 309 ## E2348C_1390 hypothetical protein + Term 3544 - 3579 -0.7 - Term 3386 - 3440 9.6 9 5 Tu 1 . - CDS 3492 - 3770 186 ## ECSE_1695 hypothetical protein - Prom 3853 - 3912 3.2 + Prom 4112 - 4171 3.1 10 6 Op 1 . + CDS 4329 - 4517 181 ## ECSP_2138 putative inhibitor of cell division encoded by cryptic prophage CP-933P 11 6 Op 2 . + CDS 4514 - 4705 171 ## ECO111_1046 hypothetical protein 12 6 Op 3 . + CDS 4798 - 7269 1385 ## EcE24377A_1416 exonuclease family protein 13 6 Op 4 . + CDS 7334 - 7582 69 ## ECS88_1328 phage excisionase 14 6 Op 5 . + CDS 7560 - 8690 371 ## COG0582 Integrase + Term 8699 - 8732 1.2 - Term 8666 - 8697 3.1 15 7 Tu 1 . - CDS 8736 - 9305 674 ## COG3047 Outer membrane protein W - Prom 9418 - 9477 7.0 16 8 Op 1 . + CDS 9746 - 10489 559 ## JW1247 predicted inner membrane protein 17 8 Op 2 9/0.000 + CDS 10519 - 11058 554 ## COG2917 Intracellular septation protein A + Term 11060 - 11101 5.5 + Prom 11075 - 11134 2.1 18 8 Op 3 . + CDS 11163 - 11561 361 ## COG1607 Acyl-CoA hydrolase + Term 11564 - 11605 11.3 - Term 11552 - 11593 11.3 19 9 Tu 1 . - CDS 11601 - 12320 590 ## COG0810 Periplasmic protein TonB, links inner and outer membranes - Prom 12352 - 12411 5.6 + Prom 12280 - 12339 2.3 20 10 Tu 1 . + CDS 12448 - 12840 271 ## COG2350 Uncharacterized protein conserved in bacteria + Term 12849 - 12905 5.1 + Prom 13055 - 13114 4.8 21 11 Tu 1 . + CDS 13260 - 14393 739 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 14418 - 14458 8.1 - Term 14406 - 14444 3.1 22 12 Tu 1 . - CDS 14448 - 14732 57 ## ECUMN_1547 hypothetical protein + Prom 14677 - 14736 7.8 23 13 Op 1 1/0.889 + CDS 14764 - 16224 1234 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 24 13 Op 2 . + CDS 16259 - 16588 519 ## COG3099 Uncharacterized protein conserved in bacteria + Term 16612 - 16643 4.1 - Term 16600 - 16631 4.1 25 14 Op 1 44/0.000 - CDS 16641 - 17645 853 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 26 14 Op 2 44/0.000 - CDS 17642 - 18655 582 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 27 14 Op 3 49/0.000 - CDS 18667 - 19575 925 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 28 14 Op 4 21/0.000 - CDS 19590 - 20510 772 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 20540 - 20592 11.1 29 14 Op 5 . - CDS 20596 - 22227 1706 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 22358 - 22417 4.2 + Prom 22514 - 22573 2.4 30 15 Tu 1 . + CDS 22646 - 22807 144 ## ECS88_1310 hypothetical protein + Term 22931 - 22960 0.4 - Term 22914 - 22952 4.6 31 16 Tu 1 . - CDS 22965 - 23612 535 ## COG2095 Multiple antibiotic transporter - Prom 23800 - 23859 6.9 32 17 Tu 1 . + CDS 24089 - 26764 2858 ## COG1454 Alcohol dehydrogenase, class IV + Prom 26794 - 26853 2.6 33 18 Tu 1 . + CDS 26888 - 27073 136 ## ROD_08131 ISCro3 transposase 34 19 Tu 1 . + CDS 27194 - 27784 45 ## COG3385 FOG: Transposase and inactivated derivatives - Term 28003 - 28051 8.1 35 20 Tu 1 . - CDS 28066 - 28683 350 ## COG1435 Thymidine kinase - Prom 28717 - 28776 5.6 + Prom 29193 - 29252 4.5 36 21 Tu 1 . + CDS 29288 - 29701 512 ## COG2916 DNA-binding protein H-NS + Term 29729 - 29757 3.0 - Term 29781 - 29822 8.8 37 22 Tu 1 . - CDS 29845 - 30753 1001 ## COG1210 UDP-glucose pyrophosphorylase - Prom 30890 - 30949 4.9 - Term 30877 - 30911 -0.4 38 23 Op 1 4/0.556 - CDS 30955 - 31968 667 ## COG0784 FOG: CheY-like receiver - Term 31987 - 32016 -0.3 39 23 Op 2 . - CDS 32060 - 33004 379 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily - Prom 33215 - 33274 3.2 + Prom 32974 - 33033 3.8 40 24 Op 1 4/0.556 + CDS 33078 - 33536 200 ## PROTEIN SUPPORTED gi|90021194|ref|YP_527021.1| ribosomal protein L20 41 24 Op 2 . + CDS 33586 - 34428 895 ## COG0788 Formyltetrahydrofolate hydrolase + TRNA 34588 - 34672 66.9 # Tyr GTA 0 0 + TRNA 34882 - 34966 66.9 # Tyr GTA 0 0 Predicted protein(s) >gi|223713580|gb|ACDM01000018.1| GENE 1 2 - 296 205 98 aa, chain - ## HITS:1 COG:yi52_g5 KEGG:ns NR:ns ## COG: yi52_g5 COG3039 # Protein_GI_number: 16129331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Escherichia coli K12 # 1 98 1 98 326 201 100.0 3e-52 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETM LRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSA >gi|223713580|gb|ACDM01000018.1| GENE 2 337 - 468 57 43 aa, chain - ## HITS:1 COG:no KEGG:ECBD_2079 NR:ns ## KEGG: ECBD_2079 # Name: not_defined # Def: protein of unknown function DUF977 # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 43 1 43 119 67 86.0 1e-10 MAKVFTQEEREKIKGQVVELVRQSGRETLRQLETKEGANKFLI >gi|223713580|gb|ACDM01000018.1| GENE 3 509 - 1393 372 294 aa, chain - ## HITS:1 COG:no KEGG:E2348C_1395 NR:ns ## KEGG: E2348C_1395 # Name: not_defined # Def: predicted replication protein # Organism: E.coli_0127 # Pathway: not_defined # 1 294 26 320 320 545 98.0 1e-153 MARLADYSNDEGVSWPAIETIRRQIGARSESTVKSAIAELAKEGWLTKEERKVGGRNVSN IYRLNVEKLEAAAAARESYKPKRKISPAKNDPLTVDPSNIAPSTVDPSNFDGSTVDKKLP IRGPMIDPDPSVLKPDPSDKRSSCPDASQPDPQTAEQDFLTRHPDAVVFSAKKRQWGSQE DLVCAQWIWGRIVSLYEQAASYDGEITRPKEPNWTAWANDVRTMRMLDGRTHRQICEMFG RLQRDSFWVKNIMSPAKLREKWDELVIRLGRSPAQRCVNHISEPDTEIPPGFRG >gi|223713580|gb|ACDM01000018.1| GENE 4 1491 - 1916 442 141 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_2277 NR:ns ## KEGG: ECH74115_2277 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 141 1 141 141 271 100.0 6e-72 MKIKHEHIRMAMNVWAHPDGEKVPAAKITKAYFELGMTFPELYDDSHPEALARNTQKIFR WLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYYREIVERRDRLVKDVDDFVAS AVVLYDQMNRGGPAGNAVVMH >gi|223713580|gb|ACDM01000018.1| GENE 5 1900 - 2181 154 93 aa, chain - ## HITS:1 COG:no KEGG:E2348C_1393 NR:ns ## KEGG: E2348C_1393 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 93 1 93 93 181 100.0 1e-44 MEELRIFLNSLSSDEQRMFACECGTSIGYLRKALSKGQVLGASLCVLIERASNGEVTRQQ LRPFDWMNIWPELEDTKTLTQPLSRSLIHENQA >gi|223713580|gb|ACDM01000018.1| GENE 6 2282 - 2701 250 139 aa, chain + ## HITS:1 COG:ECs1941 KEGG:ns NR:ns ## COG: ECs1941 COG1396 # Protein_GI_number: 15831195 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 90 139 54 103 103 65 72.0 2e-11 MDKYEFRRQQLIKIRDEKCDGKAVNVARKIGREPSYVSRMLYPEGKKGKKRIADDMVEII EESFGLPRGWMDGIVSSSTNTASSYETRVLTPRQRIFLDLLDELPESEADKLLKTLEEKK QYYNMIYEEIRKKKAQNAS >gi|223713580|gb|ACDM01000018.1| GENE 7 2886 - 3119 150 77 aa, chain + ## HITS:1 COG:no KEGG:E2348C_1391 NR:ns ## KEGG: E2348C_1391 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 77 1 77 77 132 100.0 3e-30 MTAGFNFNNYAAGFCSATPALRGNEVNMDMLNLGNNESLVCGVFPNQDGTFTAMTYTRSK TFKTEAGARRWLTRNTD >gi|223713580|gb|ACDM01000018.1| GENE 8 3131 - 3532 309 133 aa, chain + ## HITS:1 COG:no KEGG:E2348C_1390 NR:ns ## KEGG: E2348C_1390 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 133 1 133 133 242 99.0 3e-63 MEFKDLPVPFLEMASNVVRSQLATLDLSTVEKETIDTISGNVRRAFIGLYEEKRLFGGQN SPENKNQANDEKLKHIIALLLEDAKRLQQLEPNAGTEARIWIAMKSLKCESSDYFKTTIK TTQLSGELLKKLP >gi|223713580|gb|ACDM01000018.1| GENE 9 3492 - 3770 186 92 aa, chain - ## HITS:1 COG:no KEGG:ECSE_1695 NR:ns ## KEGG: ECSE_1695 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 92 27 118 118 155 100.0 4e-37 MDKKQIEALQSIIEKQDEAIRILSYRTDMILNMLSALTAALGGTKTNVYREVVIQQIDKF EKTIPGINAHLAEQEKDHALMAISSVALPKVE >gi|223713580|gb|ACDM01000018.1| GENE 10 4329 - 4517 181 62 aa, chain + ## HITS:1 COG:no KEGG:ECSP_2138 NR:ns ## KEGG: ECSP_2138 # Name: not_defined # Def: putative inhibitor of cell division encoded by cryptic prophage CP-933P # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 62 36 97 97 126 98.0 3e-28 METLLPNVNTSEGCFEIGVTISNPVFTEDAINKRKHERELLNKICILSMLARLRPIQKGC AQ >gi|223713580|gb|ACDM01000018.1| GENE 11 4514 - 4705 171 63 aa, chain + ## HITS:1 COG:no KEGG:ECO111_1046 NR:ns ## KEGG: ECO111_1046 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 63 4 66 66 120 100.0 2e-26 MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGNCYPVDKVIHQDNNEIP AGL >gi|223713580|gb|ACDM01000018.1| GENE 12 4798 - 7269 1385 823 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_1416 NR:ns ## KEGG: EcE24377A_1416 # Name: not_defined # Def: exonuclease family protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 823 1 823 823 1559 96.0 0 MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFLV CEDKPGIPRPALDSWDAEYMQENRWDEASASFVPVETESDPMNVTFDKLAPEVQNAVMVK FDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCK PGAKWPEIQAEMRIWKKRREGERKEAGKYTSVVDLARARANQQHTENSTGKINPVIAAIH REYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWAKNEVIDNDREDWKRISASMRKQPD ALRYDRQTIFGLVRERPIDIHKDPVALNKYITEYLTTKGVFEDEGTNQSATDTLSSPVPE TDAVETAIPDNEKTECKVEVEPSVEREGPFYFLFTDKDGEKYGRANKLSGLDKALSAGAT EITKEEYFARKNGTYSGSQQNTGASDTTAQPGSVKVTADEVNKIMQAANISQPDADELLA VSRGEFVEGISDPNDPKWVKGNQTRDSVNQNQQETEQNDQKAEQNSPNALQNEPETKQPE SVAQQEVEKVCTACGQTGGGNCPDCGAVMGDATYQETFDEEYQPEVQEDDPEEMEGAEHP HKENTGGNQHHDSDNETGETADHSIKVNGHQEITSTSRTCDHLMIDLETMGKNPDAPIIS IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDDAL LQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKA IDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLIPNQADF >gi|223713580|gb|ACDM01000018.1| GENE 13 7334 - 7582 69 82 aa, chain + ## HITS:1 COG:no KEGG:ECS88_1328 NR:ns ## KEGG: ECS88_1328 # Name: not_defined # Def: phage excisionase # Organism: E.coli_S88 # Pathway: not_defined # 1 82 1 82 82 145 100.0 6e-34 MARLILLTEWAKEEFSEPVPTPSTLSKYAKAGMIFPLPKKVGRRWRVDPQARFVGMVNKP EVIATDHPALKRILEDGAPAKI >gi|223713580|gb|ACDM01000018.1| GENE 14 7560 - 8690 371 376 aa, chain + ## HITS:1 COG:ECs1757 KEGG:ns NR:ns ## COG: ECs1757 COG0582 # Protein_GI_number: 15831011 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1 376 1 376 376 762 99.0 0 MARPRKYKTDVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLA RQQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFD ERFGTRPLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAE SAKKPQVRISRQRLTFDEWMMIYNAAEKNGYFLQRGMLLALMTGQRLSDICKMQFSDIRD GYLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAKRGGM VKPATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKILLGHSNQKMT DIYNDVRGKEWKKLVI >gi|223713580|gb|ACDM01000018.1| GENE 15 8736 - 9305 674 189 aa, chain - ## HITS:1 COG:ECs1756 KEGG:ns NR:ns ## COG: ECs1756 COG3047 # Protein_GI_number: 15831010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein W # Organism: Escherichia coli O157:H7 # 1 189 29 212 212 337 93.0 6e-93 MRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGT RATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLS LKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTAKYKSDGRKLAKGSYSDNVRLDPWV FMFSAGYRF >gi|223713580|gb|ACDM01000018.1| GENE 16 9746 - 10489 559 247 aa, chain + ## HITS:1 COG:no KEGG:JW1247 NR:ns ## KEGG: JW1247 # Name: yciC # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 247 1 247 247 352 100.0 5e-96 MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGS SGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIG ASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSM RLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR LYMLIRQ >gi|223713580|gb|ACDM01000018.1| GENE 17 10519 - 11058 554 179 aa, chain + ## HITS:1 COG:ECs1754 KEGG:ns NR:ns ## COG: ECs1754 COG2917 # Protein_GI_number: 15831008 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Intracellular septation protein A # Organism: Escherichia coli O157:H7 # 1 179 1 179 179 291 100.0 6e-79 MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVV FGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN LAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS >gi|223713580|gb|ACDM01000018.1| GENE 18 11163 - 11561 361 132 aa, chain + ## HITS:1 COG:yciA KEGG:ns NR:ns ## COG: yciA COG1607 # Protein_GI_number: 16129214 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Escherichia coli K12 # 1 132 1 132 132 264 100.0 3e-71 MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVE GMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASEPIGQRYKATEALFKYVAV DPEGKPRALPVE >gi|223713580|gb|ACDM01000018.1| GENE 19 11601 - 12320 590 239 aa, chain - ## HITS:1 COG:tonB KEGG:ns NR:ns ## COG: tonB COG0810 # Protein_GI_number: 16129213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Escherichia coli K12 # 1 239 1 239 239 286 100.0 2e-77 MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQA VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ >gi|223713580|gb|ACDM01000018.1| GENE 20 12448 - 12840 271 130 aa, chain + ## HITS:1 COG:ECs1751 KEGG:ns NR:ns ## COG: ECs1751 COG2350 # Protein_GI_number: 15831005 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 130 1 130 130 253 100.0 4e-68 MHGLNKDIIFPLQIFALSNNVLYNFPEQGVVPVLYVIYAQDKADSLEKRLSVRPAHLARL QLLHDEGRLLTAGPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEH VSVKPFKKVF >gi|223713580|gb|ACDM01000018.1| GENE 21 13260 - 14393 739 377 aa, chain + ## HITS:1 COG:kch KEGG:ns NR:ns ## COG: kch COG1226 # Protein_GI_number: 16129211 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Escherichia coli K12 # 1 377 41 417 417 682 100.0 0 MSVNLLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIAL IYTLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMTSI FGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDI KQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVK TVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLLNSGHGIFS DNDELETKADSKESAQK >gi|223713580|gb|ACDM01000018.1| GENE 22 14448 - 14732 57 94 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_1547 NR:ns ## KEGG: ECUMN_1547 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 94 1 94 94 144 100.0 1e-33 MSLRIWIHLANKNAGKALVSVGGGGIMTILLLHRVVNMKRSRTEVGRWRMQRQASRRKSR WLEGQSRRNMRIHSIRKCILNKQRNSLLFAIYNI >gi|223713580|gb|ACDM01000018.1| GENE 23 14764 - 16224 1234 486 aa, chain + ## HITS:1 COG:cls KEGG:ns NR:ns ## COG: cls COG1502 # Protein_GI_number: 16129210 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli K12 # 1 486 1 486 486 978 100.0 0 MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLAVGE LHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAPLFKLCERRQGIAGVKGNQ LQLMTESDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQVAESLMAAARRGIHCRLMLD SAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRRMDLRQHRKMIMIDNYIAYTGSM NMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIYSCDWEIETGKRILPPPPDVNIMPF EQASGHTIHTIASGPGFPEDLIHQALLTAAYSAREYLIMTTPYFVPSDDLLHAICTAAQR GVDVSIILPRKNDSMLVGWASRAFFTELLAAGVKIYQFEGGLLHTKSVLVDGELSLVGTV NLDMRSLWLNFEITLAIDDKGFGADLAAVQDDYISRSRLLDARLWLKRPLWQRVAERLFY FFSPLL >gi|223713580|gb|ACDM01000018.1| GENE 24 16259 - 16588 519 109 aa, chain + ## HITS:1 COG:yciU KEGG:ns NR:ns ## COG: yciU COG3099 # Protein_GI_number: 16129209 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 109 27 135 135 201 100.0 2e-52 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEH VDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE >gi|223713580|gb|ACDM01000018.1| GENE 25 16641 - 17645 853 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 329 1 325 329 333 51 1e-90 MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESG CGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTI GEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL GHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVF RTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL >gi|223713580|gb|ACDM01000018.1| GENE 26 17642 - 18655 582 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 12 317 4 311 329 228 40 3e-59 MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGS GKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPY MRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL VMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCP FQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVEELL >gi|223713580|gb|ACDM01000018.1| GENE 27 18667 - 19575 925 302 aa, chain - ## HITS:1 COG:STM1744 KEGG:ns NR:ns ## COG: STM1744 COG1173 # Protein_GI_number: 16765088 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 302 1 302 302 509 96.0 1e-144 MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLS QFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGT LYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMA RIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFL SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK DR >gi|223713580|gb|ACDM01000018.1| GENE 28 19590 - 20510 772 306 aa, chain - ## HITS:1 COG:ECs1744 KEGG:ns NR:ns ## COG: ECs1744 COG0601 # Protein_GI_number: 15830998 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 549 100.0 1e-156 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIM TQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAA LKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMVA LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI DPKIRY >gi|223713580|gb|ACDM01000018.1| GENE 29 20596 - 22227 1706 543 aa, chain - ## HITS:1 COG:ECs1743 KEGG:ns NR:ns ## COG: ECs1743 COG4166 # Protein_GI_number: 15830997 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 543 1 543 543 1082 100.0 0 MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGV PESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQDFV YSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPY FYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYY YEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFG WSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVN QEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYI VKH >gi|223713580|gb|ACDM01000018.1| GENE 30 22646 - 22807 144 53 aa, chain + ## HITS:1 COG:no KEGG:ECS88_1310 NR:ns ## KEGG: ECS88_1310 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 12 53 63 104 104 76 100.0 2e-13 MSIFSDYSSSSEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT >gi|223713580|gb|ACDM01000018.1| GENE 31 22965 - 23612 535 215 aa, chain - ## HITS:1 COG:ychE KEGG:ns NR:ns ## COG: ychE COG2095 # Protein_GI_number: 16129203 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli K12 # 1 215 1 215 215 377 100.0 1e-105 MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWI SLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGV VPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQ TGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN >gi|223713580|gb|ACDM01000018.1| GENE 32 24089 - 26764 2858 891 aa, chain + ## HITS:1 COG:ECs1741_2 KEGG:ns NR:ns ## COG: ECs1741_2 COG1454 # Protein_GI_number: 15830995 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 448 872 1 425 444 860 100.0 0 MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMG IVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTA IFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNA LMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTF DNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQGKELKAVQDVILKNGALNAAIVGQP AYKIAELAGFSVPENTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEDAVEKAEKLV AMGGIGHTSCLYTDQDNQPARVSYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLG CGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHK RALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSIVRKGAELANSFKPDVI IALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSG TGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAME AYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLG VCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIAD HLGLSAPGDRTAAKIEKLLAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQ CTGANPRYPLISELKQILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA >gi|223713580|gb|ACDM01000018.1| GENE 33 26888 - 27073 136 61 aa, chain + ## HITS:1 COG:no KEGG:ROD_08131 NR:ns ## KEGG: ROD_08131 # Name: not_defined # Def: ISCro3 transposase # Organism: C.rodentium # Pathway: not_defined # 1 60 1 60 445 126 96.0 2e-28 MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVV Q >gi|223713580|gb|ACDM01000018.1| GENE 34 27194 - 27784 45 196 aa, chain + ## HITS:1 COG:yi41 KEGG:ns NR:ns ## COG: yi41 COG3385 # Protein_GI_number: 16132099 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 20 140 124 243 442 76 38.0 3e-14 MALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPV MRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQ KGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVK ISKTRYPVKHSAAPLK >gi|223713580|gb|ACDM01000018.1| GENE 35 28066 - 28683 350 205 aa, chain - ## HITS:1 COG:tdk KEGG:ns NR:ns ## COG: tdk COG1435 # Protein_GI_number: 16129199 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Escherichia coli K12 # 1 205 1 205 205 407 100.0 1e-114 MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAK LFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSEVVDQLDIPVLCYGLRTDF RGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQAGRPYNEGEQVVIGGNERYVS VCRKHYKEALQVDSLTAIQERHRHD >gi|223713580|gb|ACDM01000018.1| GENE 36 29288 - 29701 512 137 aa, chain + ## HITS:1 COG:ECs1739 KEGG:ns NR:ns ## COG: ECs1739 COG2916 # Protein_GI_number: 15830993 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 197 100.0 4e-51 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK KAMDEQGKSLDDFLIKQ >gi|223713580|gb|ACDM01000018.1| GENE 37 29845 - 30753 1001 302 aa, chain - ## HITS:1 COG:ECs1738 KEGG:ns NR:ns ## COG: ECs1738 COG1210 # Protein_GI_number: 15830992 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 302 1 302 302 589 100.0 1e-168 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLV THSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVL CAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGV VDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQ LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGI KK >gi|223713580|gb|ACDM01000018.1| GENE 38 30955 - 31968 667 337 aa, chain - ## HITS:1 COG:STM1753_1 KEGG:ns NR:ns ## COG: STM1753_1 COG0784 # Protein_GI_number: 16765097 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Salmonella typhimurium LT2 # 1 134 1 134 134 248 91.0 2e-65 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE >gi|223713580|gb|ACDM01000018.1| GENE 39 32060 - 33004 379 314 aa, chain - ## HITS:1 COG:rssA KEGG:ns NR:ns ## COG: rssA COG1752 # Protein_GI_number: 16129195 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli K12 # 1 314 1 314 314 632 100.0 0 MATIAFQGNLAGIMRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVG AAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSR RFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVNPIPISLT RALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVT APTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVE RKMDELLPLVRTNI >gi|223713580|gb|ACDM01000018.1| GENE 40 33078 - 33536 200 152 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90021194|ref|YP_527021.1| ribosomal protein L20 [Saccharophagus degradans 2-40] # 4 127 3 131 134 81 37 6e-15 MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAA ALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENG QWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ >gi|223713580|gb|ACDM01000018.1| GENE 41 33586 - 34428 895 280 aa, chain + ## HITS:1 COG:purU KEGG:ns NR:ns ## COG: purU COG0788 # Protein_GI_number: 16129193 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Escherichia coli K12 # 1 280 1 280 280 564 100.0 1e-161 MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFND STLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGN HDTLRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVAR FPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHT YTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNRTIIL Prediction of potential genes in microbial genomes Time: Mon May 16 18:47:17 2011 Seq name: gi|223713579|gb|ACDM01000019.1| Escherichia sp. 4_1_40B cont1.19, whole genome shotgun sequence Length of sequence - 16248 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 7, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 254 - 285 1.6 1 1 Op 1 12/0.000 - CDS 305 - 982 925 ## COG2181 Nitrate reductase gamma subunit 2 1 Op 2 12/0.000 - CDS 982 - 1692 917 ## COG2180 Nitrate reductase delta subunit 3 1 Op 3 13/0.000 - CDS 1689 - 3227 1839 ## COG1140 Nitrate reductase beta subunit 4 1 Op 4 10/0.000 - CDS 3224 - 6967 4513 ## COG5013 Nitrate reductase alpha subunit - Prom 7157 - 7216 5.7 - Term 7306 - 7336 3.4 5 1 Op 5 . - CDS 7483 - 8874 1153 ## COG2223 Nitrate/nitrite transporter - Prom 8900 - 8959 1.8 6 1 Op 6 . - CDS 8969 - 9187 135 ## SSON_1954 hypothetical protein - Prom 9425 - 9484 3.1 + Prom 8994 - 9053 7.5 7 2 Op 1 8/0.000 + CDS 9213 - 11009 1532 ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific 8 2 Op 2 . + CDS 11002 - 11652 851 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 9 3 Tu 1 . - CDS 11653 - 13047 845 ## ECDH10B_1279 hypothetical protein - Prom 13071 - 13130 3.3 + Prom 13139 - 13198 2.7 10 4 Tu 1 . + CDS 13232 - 13585 369 ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction + Term 13588 - 13633 1.9 11 5 Tu 1 2/1.000 - CDS 13629 - 14303 528 ## COG3703 Uncharacterized protein involved in cation transport - Prom 14387 - 14446 2.9 12 6 Tu 1 . - CDS 14482 - 14712 276 ## COG4572 Putative cation transport regulator - Prom 14932 - 14991 5.0 + Prom 14876 - 14935 4.8 13 7 Tu 1 . + CDS 14982 - 16082 1174 ## COG0387 Ca2+/H+ antiporter + Term 16086 - 16140 7.8 Predicted protein(s) >gi|223713579|gb|ACDM01000019.1| GENE 1 305 - 982 925 225 aa, chain - ## HITS:1 COG:ECs1732 KEGG:ns NR:ns ## COG: ECs1732 COG2181 # Protein_GI_number: 15830986 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Escherichia coli O157:H7 # 1 225 1 225 225 422 100.0 1e-118 MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL GIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRA TTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGV AFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQLVRARH >gi|223713579|gb|ACDM01000019.1| GENE 2 982 - 1692 917 236 aa, chain - ## HITS:1 COG:ECs1731 KEGG:ns NR:ns ## COG: ECs1731 COG2180 # Protein_GI_number: 15830985 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Escherichia coli O157:H7 # 1 236 1 236 236 432 100.0 1e-121 MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLPKEDAHALGIFLRDLTTMDPLDAQA QYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHGLQLNSRELPDHLPLYLEY LAQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDLLLKLANTAIDSDKVAEKIAD EARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRRFAGAVAPQYLNITTGGQH >gi|223713579|gb|ACDM01000019.1| GENE 3 1689 - 3227 1839 512 aa, chain - ## HITS:1 COG:narH KEGG:ns NR:ns ## COG: narH COG1140 # Protein_GI_number: 16129188 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Escherichia coli K12 # 1 512 1 512 512 1093 100.0 0 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQE KYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKS QPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMYSQFENTFMMYL PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGK SEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVF LDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLS PIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTKPVLRALKRMLAMRHYKRAET VDGKVDTRALEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTF GDGCHGSDTKFNLFNSRRIDAIDVTSKTEPHP >gi|223713579|gb|ACDM01000019.1| GENE 4 3224 - 6967 4513 1247 aa, chain - ## HITS:1 COG:narG KEGG:ns NR:ns ## COG: narG COG5013 # Protein_GI_number: 16129187 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Escherichia coli K12 # 1 1247 1 1247 1247 2600 100.0 0 MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSW KIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMK MWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKN YGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPE SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQ GTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAAD LVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSL LGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLA NYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMII VGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQ RPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAP QLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGS SGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTC LYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVG HLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERF TSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLA PETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEH VSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSN GNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFN SNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIG GYAHLAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQESVK >gi|223713579|gb|ACDM01000019.1| GENE 5 7483 - 8874 1153 463 aa, chain - ## HITS:1 COG:narK KEGG:ns NR:ns ## COG: narK COG2223 # Protein_GI_number: 16129186 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Escherichia coli K12 # 1 463 1 463 463 801 100.0 0 MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAV NLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLG FAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSV MQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATS KASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFI GALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFL TAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFF IPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK >gi|223713579|gb|ACDM01000019.1| GENE 6 8969 - 9187 135 72 aa, chain - ## HITS:1 COG:no KEGG:SSON_1954 NR:ns ## KEGG: SSON_1954 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 72 1 72 72 140 98.0 1e-32 MSNNLNECDDTFWNGSILGYWLKYTHTRKELLLICRVVSRFTSVRVGILQHREKSHNFYE VTVLTMGNDKYQ >gi|223713579|gb|ACDM01000019.1| GENE 7 9213 - 11009 1532 598 aa, chain + ## HITS:1 COG:ECs1727 KEGG:ns NR:ns ## COG: ECs1727 COG3850 # Protein_GI_number: 15830981 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Escherichia coli O157:H7 # 1 598 1 598 598 1133 100.0 0 MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRL LAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNR ETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQ PWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAG LEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEF TCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQ LVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQG DALPESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPV KLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVTVAQNDNQVKLTVQDNGCG VPENAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE >gi|223713579|gb|ACDM01000019.1| GENE 8 11002 - 11652 851 216 aa, chain + ## HITS:1 COG:ECs1726 KEGG:ns NR:ns ## COG: ECs1726 COG2197 # Protein_GI_number: 15830980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 346 100.0 2e-95 MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDL NMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKAL HQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRL DITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF >gi|223713579|gb|ACDM01000019.1| GENE 9 11653 - 13047 845 464 aa, chain - ## HITS:1 COG:no KEGG:ECDH10B_1279 NR:ns ## KEGG: ECDH10B_1279 # Name: ychO, ychP # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 464 1 464 464 896 100.0 0 MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYD NLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQN NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEG ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP >gi|223713579|gb|ACDM01000019.1| GENE 10 13232 - 13585 369 117 aa, chain + ## HITS:1 COG:ECs1724 KEGG:ns NR:ns ## COG: ECs1724 COG1553 # Protein_GI_number: 15830978 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Escherichia coli O157:H7 # 1 117 1 117 117 224 100.0 2e-59 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEGYN IQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVLTF >gi|223713579|gb|ACDM01000019.1| GENE 11 13629 - 14303 528 224 aa, chain - ## HITS:1 COG:chaC KEGG:ns NR:ns ## COG: chaC COG3703 # Protein_GI_number: 16129181 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in cation transport # Organism: Escherichia coli K12 # 1 224 15 238 238 459 100.0 1e-129 MNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDEGPVWIFGYGSLMWNPALEFTESC TGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTTGVAYRLPEETLEQELTLLWKRE MITGCYLPTWCQLDLDDGRTVNAIVFIMDPRHPEYESDTRAQVIAPLIAAASGPLGTNAQ YLFSLEQELIKLGMQDDGLNDLLVSVKKLLAENFPDGVLRPGFA >gi|223713579|gb|ACDM01000019.1| GENE 12 14482 - 14712 276 76 aa, chain - ## HITS:1 COG:ECs1722 KEGG:ns NR:ns ## COG: ECs1722 COG4572 # Protein_GI_number: 15830976 # Func_class: R General function prediction only # Function: Putative cation transport regulator # Organism: Escherichia coli O157:H7 # 1 76 1 76 76 99 100.0 1e-21 MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV KHEYAKGDDDKWHKKS >gi|223713579|gb|ACDM01000019.1| GENE 13 14982 - 16082 1174 366 aa, chain + ## HITS:1 COG:ECs1721 KEGG:ns NR:ns ## COG: ECs1721 COG0387 # Protein_GI_number: 15830975 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1 366 1 366 366 573 99.0 1e-163 MSNAQEAVKTRHKETSLIFPVLALVVLFLWGSSQTLPVVIAINLLALIGILSSAFSVVRH ADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVG FSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMALPAANFSTGQALLVALISAA MYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAHSSLWHAIWLIIHLIAVIAVTKM NASSLETLLDSMNAPVAFTGFLVALLILSPEGLGALKAVLNNQVQRAMNLFFGSVLATIS LTVPVVTLIAFMTGNELQFALGAPEMVVMVASLVLCHISFSTGRTNVLNGAAHLALFAAY LMTIFA Prediction of potential genes in microbial genomes Time: Mon May 16 18:47:54 2011 Seq name: gi|223713578|gb|ACDM01000020.1| Escherichia sp. 4_1_40B cont1.20, whole genome shotgun sequence Length of sequence - 93099 bp Number of predicted genes - 93, with homology - 93 Number of transcription units - 53, operones - 18 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 6/0.111 - CDS 964 - 1773 787 ## COG2912 Uncharacterized conserved protein 3 1 Op 3 6/0.111 - CDS 1777 - 2169 432 ## COG3094 Uncharacterized protein conserved in bacteria 4 1 Op 4 32/0.000 - CDS 2166 - 2999 482 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 5 1 Op 5 9/0.000 - CDS 2999 - 4081 1177 ## COG0216 Protein chain release factor A 6 1 Op 6 . - CDS 4123 - 5379 1278 ## COG0373 Glutamyl-tRNA reductase - Prom 5418 - 5477 4.0 + Prom 5393 - 5452 6.0 7 2 Op 1 13/0.000 + CDS 5593 - 6216 576 ## COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis 8 2 Op 2 13/0.000 + CDS 6216 - 7067 521 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Term 7087 - 7113 0.3 9 2 Op 3 3/0.444 + CDS 7152 - 8165 1009 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 8178 - 8217 4.1 10 3 Tu 1 . + CDS 8317 - 9969 1736 ## COG0659 Sulfate permease and related transporters (MFS superfamily) 11 4 Tu 1 . - CDS 10024 - 10302 269 ## LF82_2742 uncharacterized protein YchH - Prom 10355 - 10414 3.7 + Prom 10491 - 10550 4.2 12 5 Op 1 14/0.000 + CDS 10580 - 11164 513 ## COG0193 Peptidyl-tRNA hydrolase + Term 11176 - 11208 0.7 + Prom 11189 - 11248 2.4 13 5 Op 2 1/0.778 + CDS 11281 - 12372 1276 ## COG0012 Predicted GTPase, probable translation factor + Term 12433 - 12462 2.1 14 6 Tu 1 . + CDS 13141 - 16008 1624 ## COG3468 Type V secretory pathway, adhesin AidA 15 7 Tu 1 . - CDS 16108 - 18027 1534 ## COG3284 Transcriptional activator of acetoin/glycerol metabolism - Prom 18060 - 18119 6.2 + Prom 18102 - 18161 4.9 16 8 Op 1 10/0.000 + CDS 18255 - 19325 1105 ## COG2376 Dihydroxyacetone kinase 17 8 Op 2 2/0.667 + CDS 19336 - 19968 640 ## COG2376 Dihydroxyacetone kinase 18 8 Op 3 1/0.778 + CDS 19979 - 21397 1180 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 21407 - 21447 8.1 + Prom 21571 - 21630 5.5 19 9 Tu 1 . + CDS 21717 - 23414 1656 ## COG1626 Neutral trehalase 20 10 Tu 1 . - CDS 23493 - 23789 111 ## B21_01181 hypothetical protein - Prom 23922 - 23981 4.7 - Term 24057 - 24098 6.2 21 11 Tu 1 . - CDS 24111 - 24365 259 ## COG2261 Predicted membrane protein - Prom 24480 - 24539 3.6 + Prom 24271 - 24330 2.3 22 12 Tu 1 . + CDS 24566 - 25300 664 ## COG5581 Predicted glycosyltransferase - Term 25139 - 25182 1.7 23 13 Op 1 . - CDS 25302 - 25913 594 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 24 13 Op 2 . - CDS 25852 - 26040 85 ## gi|293409572|ref|ZP_06653148.1| predicted protein + Prom 25926 - 25985 2.6 25 14 Op 1 1/0.778 + CDS 26013 - 26927 769 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF + Term 26962 - 26995 -0.4 + Prom 26941 - 27000 1.7 26 14 Op 2 . + CDS 27022 - 28758 1783 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain - Term 29002 - 29033 -0.2 27 15 Op 1 7/0.056 - CDS 29144 - 30214 896 ## COG0787 Alanine racemase 28 15 Op 2 . - CDS 30224 - 31522 1405 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Prom 31568 - 31627 4.7 + Prom 31548 - 31607 4.4 29 16 Tu 1 . + CDS 31852 - 33384 1523 ## COG2719 Uncharacterized conserved protein + Term 33398 - 33426 1.0 - Term 33382 - 33418 2.3 30 17 Tu 1 . - CDS 33436 - 34155 772 ## COG2186 Transcriptional regulators - Prom 34188 - 34247 5.0 + Prom 34269 - 34328 5.5 31 18 Tu 1 . + CDS 34376 - 35917 1750 ## COG3067 Na+/H+ antiporter + Term 35928 - 35959 4.1 + Prom 35924 - 35983 4.2 32 19 Tu 1 . + CDS 36063 - 36593 572 ## COG1495 Disulfide bond formation protein DsbB + Term 36602 - 36632 3.0 33 20 Op 1 4/0.389 - CDS 36639 - 37907 522 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 34 20 Op 2 . - CDS 37907 - 38326 318 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Prom 38620 - 38679 4.8 35 21 Tu 1 . + CDS 38699 - 39610 807 ## ECH74115_1668 hemolysin E 36 22 Op 1 1/0.778 - CDS 39817 - 40263 490 ## COG2983 Uncharacterized conserved protein - Prom 40287 - 40346 3.9 37 22 Op 2 2/0.667 - CDS 40355 - 41014 664 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 38 22 Op 3 . - CDS 41086 - 41379 318 ## COG3100 Uncharacterized protein conserved in bacteria - Prom 41571 - 41630 6.6 + Prom 41528 - 41587 4.5 39 23 Tu 1 . + CDS 41621 - 42022 258 ## ECO111_1505 hypothetical protein - Term 42014 - 42054 2.1 40 24 Tu 1 . - CDS 42125 - 42487 60 ## JW1166 hypothetical protein - Prom 42711 - 42770 4.6 + Prom 42806 - 42865 4.5 41 25 Op 1 22/0.000 + CDS 43013 - 43708 438 ## COG0850 Septum formation inhibitor 42 25 Op 2 22/0.000 + CDS 43732 - 44544 914 ## COG2894 Septum formation inhibitor-activating ATPase 43 25 Op 3 . + CDS 44548 - 44814 465 ## COG0851 Septum formation topological specificity factor + Term 44840 - 44877 8.0 - Term 45142 - 45170 1.0 44 26 Op 1 . - CDS 45186 - 45398 69 ## COG3468 Type V secretory pathway, adhesin AidA 45 26 Op 2 . - CDS 45407 - 45595 99 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 45730 - 45789 7.1 + Prom 45779 - 45838 6.9 46 27 Op 1 . + CDS 45930 - 46103 101 ## ECDH10B_1224 hypothetical protein 47 27 Op 2 . + CDS 46105 - 46449 345 ## EcSMS35_1978 hypothetical protein 48 27 Op 3 . + CDS 46459 - 46788 496 ## ECO111_1498 hypothetical protein + Term 46802 - 46838 5.2 49 28 Tu 1 . - CDS 46871 - 47764 882 ## COG3468 Type V secretory pathway, adhesin AidA 50 29 Tu 1 . - CDS 47972 - 49492 630 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 49545 - 49604 6.0 - Term 49761 - 49795 -0.1 51 30 Tu 1 . - CDS 49892 - 50110 111 ## c1611 hypothetical protein - Prom 50139 - 50198 6.7 52 31 Tu 1 . - CDS 50242 - 51765 625 ## COG2200 FOG: EAL domain - Prom 52003 - 52062 4.4 - Term 51954 - 51985 1.8 53 32 Tu 1 . - CDS 52097 - 52273 240 ## B21_01150 hypothetical protein - Prom 52370 - 52429 4.9 54 33 Tu 1 . - CDS 52458 - 52724 207 ## B21_01149 hypothetical protein - Prom 52744 - 52803 3.7 - Term 52920 - 52962 3.3 55 34 Tu 1 . - CDS 53068 - 53304 215 ## B21_01147 hypothetical protein - Prom 53427 - 53486 6.5 56 35 Tu 1 . + CDS 53711 - 54829 524 ## COG2200 FOG: EAL domain + Term 54948 - 54995 4.6 + Prom 54908 - 54967 7.3 57 36 Tu 1 . + CDS 55034 - 55765 370 ## COG0789 Predicted transcriptional regulators + Prom 55797 - 55856 2.6 58 37 Tu 1 . + CDS 55986 - 56390 128 ## COG5562 Phage envelope protein + Term 56565 - 56604 1.2 - Term 57457 - 57496 4.1 59 38 Tu 1 . - CDS 57518 - 58768 1647 ## COG0538 Isocitrate dehydrogenases - Prom 58883 - 58942 4.4 + Prom 58889 - 58948 6.5 60 39 Op 1 3/0.444 + CDS 58970 - 59593 497 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 61 39 Op 2 6/0.111 + CDS 59603 - 60064 431 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 62 39 Op 3 4/0.389 + CDS 60118 - 61224 1286 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 63 39 Op 4 9/0.000 + CDS 61260 - 61901 760 ## COG2915 Uncharacterized protein involved in purine metabolism 64 39 Op 5 4/0.389 + CDS 61905 - 63275 1612 ## COG0015 Adenylosuccinate lyase + Term 63285 - 63328 9.1 + Prom 63326 - 63385 7.4 65 40 Op 1 40/0.000 + CDS 63444 - 64115 885 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 66 40 Op 2 2/0.667 + CDS 64115 - 65575 1196 ## COG0642 Signal transduction histidine kinase 67 40 Op 3 . + CDS 65651 - 66772 1231 ## COG2850 Uncharacterized conserved protein + Term 66788 - 66825 9.1 68 41 Tu 1 . - CDS 66821 - 68047 1485 ## COG2195 Di- and tripeptidases - Prom 68154 - 68213 5.9 + Prom 68171 - 68230 4.0 69 42 Op 1 30/0.000 + CDS 68315 - 69433 1202 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 70 42 Op 2 36/0.000 + CDS 69417 - 70274 1028 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 71 42 Op 3 25/0.000 + CDS 70271 - 71065 899 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 72 42 Op 4 . + CDS 71062 - 72108 1494 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 72113 - 72155 7.7 73 43 Op 1 . + CDS 72166 - 72627 307 ## JW5164 predicted inner membrane protein 74 43 Op 2 . + CDS 72624 - 73412 310 ## JW1107 predicted inner membrane protein 75 44 Op 1 5/0.167 - CDS 73532 - 74371 742 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 76 44 Op 2 5/0.167 - CDS 74387 - 75298 842 ## COG1940 Transcriptional regulator/sugar kinase 77 44 Op 3 23/0.000 - CDS 75327 - 76565 1303 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 78 44 Op 4 23/0.000 - CDS 76571 - 77272 226 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 79 44 Op 5 . - CDS 77265 - 78464 1312 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component - Prom 78490 - 78549 4.4 + Prom 78538 - 78597 2.5 80 45 Tu 1 . + CDS 78726 - 79799 1082 ## COG4763 Predicted membrane protein + Prom 79803 - 79862 2.7 81 46 Tu 1 . + CDS 79927 - 83373 3852 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) + Prom 83438 - 83497 4.9 82 47 Tu 1 . + CDS 83520 - 84479 865 ## COG1376 Uncharacterized protein conserved in bacteria + Term 84540 - 84573 0.8 - Term 84483 - 84522 10.2 83 48 Tu 1 . - CDS 84561 - 84818 276 ## ECO103_1157 hypothetical protein - Prom 84927 - 84986 9.8 + Prom 84863 - 84922 10.0 84 49 Tu 1 . + CDS 85059 - 85691 469 ## COG1309 Transcriptional regulator + Term 85738 - 85774 -0.4 - Term 85691 - 85730 3.1 85 50 Tu 1 . - CDS 85753 - 86292 571 ## COG3134 Predicted outer membrane lipoprotein - Prom 86353 - 86412 2.1 86 51 Tu 1 . - CDS 86502 - 87806 1372 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 87846 - 87905 5.2 - Term 88146 - 88200 -0.8 87 52 Op 1 2/0.667 - CDS 88206 - 88748 562 ## COG3150 Predicted esterase 88 52 Op 2 5/0.167 - CDS 88771 - 89796 1034 ## COG1472 Beta-glucosidase-related glycosidases 89 52 Op 3 6/0.111 - CDS 89807 - 90631 287 ## COG0510 Predicted choline kinase involved in LPS biosynthesis 90 52 Op 4 6/0.111 - CDS 90612 - 91253 585 ## COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family) 91 52 Op 5 4/0.389 - CDS 91267 - 91644 197 ## COG5633 Predicted periplasmic lipoprotein 92 52 Op 6 . - CDS 91647 - 92006 470 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Prom 92184 - 92243 4.2 93 53 Tu 1 . + CDS 92340 - 93099 663 ## COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Predicted protein(s) >gi|223713578|gb|ACDM01000020.1| GENE 1 74 - 928 1086 284 aa, chain - ## HITS:1 COG:ECs1720 KEGG:ns NR:ns ## COG: ECs1720 COG2877 # Protein_GI_number: 15830974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 284 1 284 284 567 99.0 1e-162 MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK ANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLAR QTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVD MLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK >gi|223713578|gb|ACDM01000020.1| GENE 2 964 - 1773 787 269 aa, chain - ## HITS:1 COG:ECs1719 KEGG:ns NR:ns ## COG: ECs1719 COG2912 # Protein_GI_number: 15830973 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 269 1 269 269 521 100.0 1e-148 MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSLAKEEISQLLPLEEQLE KLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLGAVLLWVANRLDLPLLPVI FPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNISPSAELFYEDLDEADNIEVI RKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEIRDRGLIYAQLDCEHVALNDLSY FVEQCPEDPISEMIRAQINNIAHKHIVLH >gi|223713578|gb|ACDM01000020.1| GENE 3 1777 - 2169 432 130 aa, chain - ## HITS:1 COG:ychQ KEGG:ns NR:ns ## COG: ychQ COG3094 # Protein_GI_number: 16129176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 130 1 130 130 207 100.0 5e-54 MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIVPPVVDTLLLLSGIALM AKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQARIIAFPLALVVLYIIIK LATTKVPLLG >gi|223713578|gb|ACDM01000020.1| GENE 4 2166 - 2999 482 277 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 7 274 23 289 294 190 40 3e-47 MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLT RRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGT GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMI VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYYQ >gi|223713578|gb|ACDM01000020.1| GENE 5 2999 - 4081 1177 360 aa, chain - ## HITS:1 COG:ECs1716 KEGG:ns NR:ns ## COG: ECs1716 COG0216 # Protein_GI_number: 15830970 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Escherichia coli O157:H7 # 1 360 1 360 360 630 99.0 0 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE DIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG GDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESG GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTT DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS GDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIREHQADQLAALSEQE >gi|223713578|gb|ACDM01000020.1| GENE 6 4123 - 5379 1278 418 aa, chain - ## HITS:1 COG:ECs1715 KEGG:ns NR:ns ## COG: ECs1715 COG0373 # Protein_GI_number: 15830969 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Escherichia coli O157:H7 # 1 418 1 418 418 732 100.0 0 MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVE EQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQ VKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESL STVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEVGAEVIALSDIDERL READIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSV DDLQSIISHNLAQRKAAAVEAETIVAQETSEFMAWLRAQSASETIREYRSQAEQVRDELT AKALAALEQGGDAQAIMQDLAWKLTNRLIHAPTKSLQQAARDGDNERLNILRDSLGLE >gi|223713578|gb|ACDM01000020.1| GENE 7 5593 - 6216 576 207 aa, chain + ## HITS:1 COG:ECs1714 KEGG:ns NR:ns ## COG: ECs1714 COG3017 # Protein_GI_number: 15830968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein involved in outer membrane biogenesis # Organism: Escherichia coli O157:H7 # 1 207 1 207 207 405 100.0 1e-113 MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQDVRNLNQYQTRGAFAY ISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEE MIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKT QPAMPANMELTDGGQRIKLKMDNWIVK >gi|223713578|gb|ACDM01000020.1| GENE 8 6216 - 7067 521 283 aa, chain + ## HITS:1 COG:ECs1713 KEGG:ns NR:ns ## COG: ECs1713 COG1947 # Protein_GI_number: 15830967 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 283 1 283 283 563 100.0 1e-161 MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGV EHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNH LWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIP TPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGT GACVFAEFDTESEARQVLEQAPEWLNGFVAKGANLSPLHRAML >gi|223713578|gb|ACDM01000020.1| GENE 9 7152 - 8165 1009 337 aa, chain + ## HITS:1 COG:ECs1712 KEGG:ns NR:ns ## COG: ECs1712 COG0462 # Protein_GI_number: 15830966 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Escherichia coli O157:H7 # 23 337 1 315 315 595 99.0 1e-170 MPGPHSFRQILSTNGRMPEVLLVPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDG EVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQD RRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQ LNLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLS DEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH >gi|223713578|gb|ACDM01000020.1| GENE 10 8317 - 9969 1736 550 aa, chain + ## HITS:1 COG:ECs1711 KEGG:ns NR:ns ## COG: ECs1711 COG0659 # Protein_GI_number: 15830965 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Escherichia coli O157:H7 # 1 550 1 550 550 919 100.0 0 MPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAG IVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIE YIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIG IVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNG IPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHK ANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAP LLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISV GIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRI VILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFF PNRRAAMADL >gi|223713578|gb|ACDM01000020.1| GENE 11 10024 - 10302 269 92 aa, chain - ## HITS:1 COG:no KEGG:LF82_2742 NR:ns ## KEGG: LF82_2742 # Name: ychH # Def: uncharacterized protein YchH # Organism: E.coli_LF82 # Pathway: not_defined # 1 92 1 92 92 152 100.0 3e-36 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS >gi|223713578|gb|ACDM01000020.1| GENE 12 10580 - 11164 513 194 aa, chain + ## HITS:1 COG:ECs1709 KEGG:ns NR:ns ## COG: ECs1709 COG0193 # Protein_GI_number: 15830963 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Escherichia coli O157:H7 # 1 194 1 194 194 370 100.0 1e-103 MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVR LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG LTKATNRLHAFKAQ >gi|223713578|gb|ACDM01000020.1| GENE 13 11281 - 12372 1276 363 aa, chain + ## HITS:1 COG:ECs1708 KEGG:ns NR:ns ## COG: ECs1708 COG0012 # Protein_GI_number: 15830962 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Escherichia coli O157:H7 # 1 363 1 363 363 721 100.0 0 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL FNV >gi|223713578|gb|ACDM01000020.1| GENE 14 13141 - 16008 1624 955 aa, chain + ## HITS:1 COG:ycgV_2 KEGG:ns NR:ns ## COG: ycgV_2 COG3468 # Protein_GI_number: 16129165 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 543 955 1 413 413 676 100.0 0 MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLLIAADTGSQYGTNITIN DGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVNDASGYAKGIIIQGKNSSLT ANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSN GIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNNANGAARFTATDLTIDVQGYSAM GINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSANALTVDVTGAAANGVEVRGGTTTI GADSHISSAQGGGLVTSGSDAIINFTGTAAQRNSIFSGGSYGASAQTATAVVNMQNTDIT VDRNGSLALGLWALSGGRITGDSLAITGAAGARGIYAMTNSQIDLTSDLVIDMSTPDQMA IATQHDDGYAASRINASGRMLINGSVLSKGGLINLDMHPGSVWTGSSLSDNVNGGKLDVA MNNSVWNVTSNSNLDTLALSHSTVDFASHGSTAGTFATLNVENLSGNSTFIMRADVVGEG NGVNNKGDLLNISGSSAGNHVLAIRNQGSEATTGNEVLTVVKTTDGAASFSASSQVELGG YLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAG GNYLNVGYLLNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSG IQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVI KASRQKNSFHVLDSQNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQ NEMTMKASNGLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLL NNSREKYSFKGNGWNNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF >gi|223713578|gb|ACDM01000020.1| GENE 15 16108 - 18027 1534 639 aa, chain - ## HITS:1 COG:ycgU KEGG:ns NR:ns ## COG: ycgU COG3284 # Protein_GI_number: 16129164 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; K Transcription # Function: Transcriptional activator of acetoin/glycerol metabolism # Organism: Escherichia coli K12 # 1 639 4 642 642 1269 100.0 0 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV >gi|223713578|gb|ACDM01000020.1| GENE 16 18255 - 19325 1105 356 aa, chain + ## HITS:1 COG:ycgT KEGG:ns NR:ns ## COG: ycgT COG2376 # Protein_GI_number: 16129163 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli K12 # 1 356 11 366 366 729 99.0 0 MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVEGKVALLSGGGSGHEPMH CGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELL HDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKL NNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFD TLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRL TTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK >gi|223713578|gb|ACDM01000020.1| GENE 17 19336 - 19968 640 210 aa, chain + ## HITS:1 COG:ECs1704 KEGG:ns NR:ns ## COG: ECs1704 COG2376 # Protein_GI_number: 15830958 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli O157:H7 # 1 210 1 210 210 394 98.0 1e-110 MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNRGFSKVVEKLPAIADKD IGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLTLEELYQMFRDGADGVISR GKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASSIAESAAQSTITMQARKGRAS YLGERSIGHQDPGATSVMFMMQMLALAAKE >gi|223713578|gb|ACDM01000020.1| GENE 18 19979 - 21397 1180 472 aa, chain + ## HITS:1 COG:ycgC_3 KEGG:ns NR:ns ## COG: ycgC_3 COG1080 # Protein_GI_number: 16129161 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 258 472 1 215 215 416 100.0 1e-116 MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNPIGTDAVKVMEAIESVA DADHVLVMMDMGSALLSAETALELLAPEIAAKVRLCAAPLVEGTLAATVSAASGADIDKV IFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAVVIKNRNGLHVRPASRLVYTL STFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLIAKGPEAEEALIAFRQLAEDNFG ETEEVAPPTLRPVPPVSGKAFYYQPVLCTVQAKSTLTVEEEQDRLRQAIDFTLLDLMTLT AKAEASGLDDIAAIFSGHHTLLDDPELLAAASELLQHEHCTAEYAWQQVLKELSQQYQQL DDEYLQARYIDVDDLLHRTLVHLTQTKEELPQFNSPTILLAENIYPSTVLQLDPAVVKGI CLSAGSPVSHSALIARELGIGWICQQGEKLYAIQPEETLTLDVKTQRFNRQG >gi|223713578|gb|ACDM01000020.1| GENE 19 21717 - 23414 1656 565 aa, chain + ## HITS:1 COG:treA KEGG:ns NR:ns ## COG: treA COG1626 # Protein_GI_number: 16129160 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli K12 # 1 565 1 565 565 1102 99.0 0 MKSPAPSRPQKMALIPACIFLCFAALSVQAEETPVTPQPPDILLGPLFNDVQNAKLFPDQ KTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPKEGEKYVPPEGQSLREHID GLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVANM VANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAY WMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIY RDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAM ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRAN KMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHF LTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQPCD NVPATRPTVKSATTQPSTKEAQPTP >gi|223713578|gb|ACDM01000020.1| GENE 20 23493 - 23789 111 98 aa, chain - ## HITS:1 COG:no KEGG:B21_01181 NR:ns ## KEGG: B21_01181 # Name: ycgY # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 98 49 146 146 200 100.0 1e-50 MLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALYSQRRRK SPGDESETLTRRNDAIFGNHVWQTFAQYFPPGLEKPSV >gi|223713578|gb|ACDM01000020.1| GENE 21 24111 - 24365 259 84 aa, chain - ## HITS:1 COG:ymgE KEGG:ns NR:ns ## COG: ymgE COG2261 # Protein_GI_number: 16129158 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 84 1 84 84 109 100.0 1e-24 MGIIAWIIFDLIAGIIAKLIMPGRDGGGFFLTCILGIVGAVVGGWLATMFGIGGSISGFN LHSFLVAVVGAILVLGIFRLLRRE >gi|223713578|gb|ACDM01000020.1| GENE 22 24566 - 25300 664 244 aa, chain + ## HITS:1 COG:ycgR KEGG:ns NR:ns ## COG: ycgR COG5581 # Protein_GI_number: 16129157 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase # Organism: Escherichia coli K12 # 1 244 1 244 244 482 100.0 1e-136 MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAE DNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRIS APLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWG VFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKAD KVRD >gi|223713578|gb|ACDM01000020.1| GENE 23 25302 - 25913 594 203 aa, chain - ## HITS:1 COG:mltE KEGG:ns NR:ns ## COG: mltE COG0741 # Protein_GI_number: 16129156 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1 203 39 241 241 405 99.0 1e-113 MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAI IAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAY LNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHV ARNHPAPQAPRYIYKLEQALDAM >gi|223713578|gb|ACDM01000020.1| GENE 24 25852 - 26040 85 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293409572|ref|ZP_06653148.1| ## NR: gi|293409572|ref|ZP_06653148.1| predicted protein [Escherichia coli B354] # 1 62 1 62 62 127 100.0 2e-28 MGQLSETETWQFLADNRNEMYIMPLRCAVVTSTAIPGYKDRRSEIEMVCLFDCVISGLFI KA >gi|223713578|gb|ACDM01000020.1| GENE 25 26013 - 26927 769 304 aa, chain + ## HITS:1 COG:ldcA KEGG:ns NR:ns ## COG: ldcA COG1619 # Protein_GI_number: 16129155 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Escherichia coli K12 # 1 304 1 304 304 628 100.0 1e-180 MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSL ARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGN VITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAML ISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPND YDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHP VLKM >gi|223713578|gb|ACDM01000020.1| GENE 26 27022 - 28758 1783 578 aa, chain + ## HITS:1 COG:STM1801 KEGG:ns NR:ns ## COG: STM1801 COG3263 # Protein_GI_number: 16765142 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Salmonella typhimurium LT2 # 1 577 1 577 577 960 92.0 0 MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF AYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLI EGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHE SNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIFSLTTA LEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAI PALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLEN ARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWEQFVYQ LSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERDLPALG KLFSQSPPVALDQRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEIVQQLLGAA PVVGDQVEFAGMIWTVAEKEDNEVLKIGVRVAEEEAES >gi|223713578|gb|ACDM01000020.1| GENE 27 29144 - 30214 896 356 aa, chain - ## HITS:1 COG:dadX KEGG:ns NR:ns ## COG: dadX COG0787 # Protein_GI_number: 16129153 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli K12 # 1 356 1 356 356 714 100.0 0 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVTV >gi|223713578|gb|ACDM01000020.1| GENE 28 30224 - 31522 1405 432 aa, chain - ## HITS:1 COG:ECs1684 KEGG:ns NR:ns ## COG: ECs1684 COG0665 # Protein_GI_number: 15830938 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 893 100.0 0 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCG DEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIA ITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPD GTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARYSRGFT PSRPGHLHGAHS >gi|223713578|gb|ACDM01000020.1| GENE 29 31852 - 33384 1523 510 aa, chain + ## HITS:1 COG:ycgB KEGG:ns NR:ns ## COG: ycgB COG2719 # Protein_GI_number: 16129151 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 510 1 510 510 1038 100.0 0 MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAY SSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM AHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALM NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF PDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEE GYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR LWGFDVMLEQQNEDGSIELLERCPPRMGNL >gi|223713578|gb|ACDM01000020.1| GENE 30 33436 - 34155 772 239 aa, chain - ## HITS:1 COG:ECs1682 KEGG:ns NR:ns ## COG: ECs1682 COG2186 # Protein_GI_number: 15830936 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 492 100.0 1e-139 MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGW LTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQH PDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYF ANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR >gi|223713578|gb|ACDM01000020.1| GENE 31 34376 - 35917 1750 513 aa, chain + ## HITS:1 COG:ECs1681 KEGG:ns NR:ns ## COG: ECs1681 COG3067 # Protein_GI_number: 15830935 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1 513 1 513 513 897 100.0 0 MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAGWLLVAEFIFTLAMALK CYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRL LLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRTEDTDLQD DSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFL RMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKVREVLQQFDDQSRHQRTRQDKIRLI VQAIIGVWLVTALALHLAEVGLIGLSVIILATSLTGVTDEHAIGKAFTESLPFTALLTVF FSVVAVIIDQQLFSPIIQFVLQASEHAQLSLFYIFNGLLSSISDNVFVGTIYINEAKAAM ESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALP YTLVLTLVGLLCVEFTLAPVTEWFMQMGWIATL >gi|223713578|gb|ACDM01000020.1| GENE 32 36063 - 36593 572 176 aa, chain + ## HITS:1 COG:ECs1680 KEGG:ns NR:ns ## COG: ECs1680 COG1495 # Protein_GI_number: 15830934 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 330 100.0 1e-90 MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLCIYERCALFGVLGAALI GAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWV PQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKAKKRDLFGR >gi|223713578|gb|ACDM01000020.1| GENE 33 36639 - 37907 522 422 aa, chain - ## HITS:1 COG:umuC KEGG:ns NR:ns ## COG: umuC COG0389 # Protein_GI_number: 16129147 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1 422 1 422 422 876 100.0 0 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR VK >gi|223713578|gb|ACDM01000020.1| GENE 34 37907 - 38326 318 139 aa, chain - ## HITS:1 COG:ECs1678 KEGG:ns NR:ns ## COG: ECs1678 COG1974 # Protein_GI_number: 15830932 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 139 1 139 139 257 100.0 5e-69 MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDS MIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITIS SEDTLDVFGVVIHVVKAMR >gi|223713578|gb|ACDM01000020.1| GENE 35 38699 - 39610 807 303 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_1668 NR:ns ## KEGG: ECH74115_1668 # Name: hlyE # Def: hemolysin E # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 303 49 351 351 511 99.0 1e-143 MTEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASV LVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVL DDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAG AAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAK LKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMINTCNEYQKRHGKKTLFEV PEV >gi|223713578|gb|ACDM01000020.1| GENE 36 39817 - 40263 490 148 aa, chain - ## HITS:1 COG:ECs1676 KEGG:ns NR:ns ## COG: ECs1676 COG2983 # Protein_GI_number: 15830930 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 148 11 158 158 300 99.0 7e-82 MSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQC RNYERRFEFEPDCIKLTRENLPTFEWLPMICAYRLLAEGKDLPAWHPLLTGSKAAMHGER ISVRHIAVKESEVIDWQDHILNKPDWAQ >gi|223713578|gb|ACDM01000020.1| GENE 37 40355 - 41014 664 219 aa, chain - ## HITS:1 COG:ycgM KEGG:ns NR:ns ## COG: ycgM COG0179 # Protein_GI_number: 16129143 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Escherichia coli K12 # 1 219 1 219 219 447 100.0 1e-125 MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAI PSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEK AKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFF TLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL >gi|223713578|gb|ACDM01000020.1| GENE 38 41086 - 41379 318 97 aa, chain - ## HITS:1 COG:ECs1674 KEGG:ns NR:ns ## COG: ECs1674 COG3100 # Protein_GI_number: 15830928 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 97 12 108 108 176 100.0 1e-44 MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMILPLDGRKKLVNADIEKV KQALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK >gi|223713578|gb|ACDM01000020.1| GENE 39 41621 - 42022 258 133 aa, chain + ## HITS:1 COG:no KEGG:ECO111_1505 NR:ns ## KEGG: ECO111_1505 # Name: ycgK # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 133 1 133 133 236 98.0 3e-61 MKIKSIRKAVLLLALLTSTSFAAGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTFYAKKGQ KVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVLQTRNDARK NKTKKYNVDIQIK >gi|223713578|gb|ACDM01000020.1| GENE 40 42125 - 42487 60 120 aa, chain - ## HITS:1 COG:no KEGG:JW1166 NR:ns ## KEGG: JW1166 # Name: ycgJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 120 3 122 122 240 100.0 9e-63 MMRIFYIGLSGVGMMFSSMASGNDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEK AAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMCRE >gi|223713578|gb|ACDM01000020.1| GENE 41 43013 - 43708 438 231 aa, chain + ## HITS:1 COG:minC KEGG:ns NR:ns ## COG: minC COG0850 # Protein_GI_number: 16129139 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Escherichia coli K12 # 1 231 1 231 231 442 100.0 1e-124 MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLKHAPVVLNVSALEDPVN WSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGKEKAPRPAPTPQAPAQNTT PVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGD RETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARLQLVENALTVQPLN >gi|223713578|gb|ACDM01000020.1| GENE 42 43732 - 44544 914 270 aa, chain + ## HITS:1 COG:ECs1669 KEGG:ns NR:ns ## COG: ECs1669 COG2894 # Protein_GI_number: 15830923 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Escherichia coli O157:H7 # 1 270 1 270 270 506 100.0 1e-143 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA DTVERLLGEERPFRFIEEEKKGFLKRLFGG >gi|223713578|gb|ACDM01000020.1| GENE 43 44548 - 44814 465 88 aa, chain + ## HITS:1 COG:ECs1668 KEGG:ns NR:ns ## COG: ECs1668 COG0851 # Protein_GI_number: 15830922 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation topological specificity factor # Organism: Escherichia coli O157:H7 # 1 88 1 88 88 148 100.0 2e-36 MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEM VTVQLEQKDGDISILELNVTLPEAEELK >gi|223713578|gb|ACDM01000020.1| GENE 44 45186 - 45398 69 70 aa, chain - ## HITS:1 COG:ECs3515 KEGG:ns NR:ns ## COG: ECs3515 COG3468 # Protein_GI_number: 15832769 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 1 70 1502 1571 1571 129 95.0 2e-30 MRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAAIKASFSSTFSGHLGVGYSHGAGVESPW NAVAGVNWSF >gi|223713578|gb|ACDM01000020.1| GENE 45 45407 - 45595 99 62 aa, chain - ## HITS:1 COG:ZypjA KEGG:ns NR:ns ## COG: ZypjA COG3468 # Protein_GI_number: 15803170 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 EDL933 # 23 61 1415 1453 1528 80 94.0 8e-16 MNPLVWCLRADVAAELRSLRRYYHLSNGMESKSVDTRSIYRELGATLSYNMRLGNGMEMN PG >gi|223713578|gb|ACDM01000020.1| GENE 46 45930 - 46103 101 57 aa, chain + ## HITS:1 COG:no KEGG:ECDH10B_1224 NR:ns ## KEGG: ECDH10B_1224 # Name: ymgI, ECK4403 # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 57 1 57 57 74 100.0 1e-12 MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIEDEIIVCATYLIPDI >gi|223713578|gb|ACDM01000020.1| GENE 47 46105 - 46449 345 114 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_1978 NR:ns ## KEGG: EcSMS35_1978 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 114 1 114 114 110 100.0 1e-23 MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGA VTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK >gi|223713578|gb|ACDM01000020.1| GENE 48 46459 - 46788 496 109 aa, chain + ## HITS:1 COG:no KEGG:ECO111_1498 NR:ns ## KEGG: ECO111_1498 # Name: ymgD # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 109 1 109 109 195 100.0 3e-49 MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNA SVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK >gi|223713578|gb|ACDM01000020.1| GENE 49 46871 - 47764 882 297 aa, chain - ## HITS:1 COG:b1170 KEGG:ns NR:ns ## COG: b1170 COG3468 # Protein_GI_number: 16129133 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 297 42 338 338 570 100.0 1e-163 MRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGGDLLT GGFTDSDSWRLGVMAGYARDYNLTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYI DSWAQYSWFKNSVKGDELAYESYSAKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQ AIWMGVDHNAHTEANGSRIENDANNNIQTRLGFRTFIRTQEKNSGPHGDDFEPFVEMNWI HNSKDFAVSMNGVKVEQDGASNLGEIKLGVNGNLNPAASVWGMWACSWVIMATMTPQ >gi|223713578|gb|ACDM01000020.1| GENE 50 47972 - 49492 630 506 aa, chain - ## HITS:1 COG:b1169 KEGG:ns NR:ns ## COG: b1169 COG3468 # Protein_GI_number: 16129132 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 506 1 506 506 780 99.0 0 MKLKKLPGFSLGLIALAVGNAYATQLLDDYSIISYMTDEESPIEIKDNNPISNGEYLTTE DESHAVKVDDGVTGYINNASVMTSGDGSYGISVDSQNKVLYISDSDIKTSGSVSDKENGG ITASAVVSEFGGTIFMNGDNSVESGGAYSAGLLSQVNDSEKMVNNTRLETTDKTNIVTSG ENAVGVLACSSPGESRTCVDAVDDEVSDSNSYEVISRADLKMNGGSITTNGINSYGAYAN GKKAYINLDYVALETVADGSYAVAIRQGNIDIKNSSITTTGTKAPIAKIYNGGELFFSNV TAVSKQDKGISIDASNIDSQAKIALLSVELSSALDSIDVNKTTTDVSILNRSIITPGNNI LVNNTGGDLNIISSDSILNGATKLVSGTTTLKLSENTIWNMKDDSVVTHLTNSDSIINLS YDDGQTFTQGKTLTVKGNYVGNNGQLNIRTVLGDDKSATDRLIVEGNTSGSTTVYVKNAG GSGAATLNGIELITVNGDESPADAFR >gi|223713578|gb|ACDM01000020.1| GENE 51 49892 - 50110 111 72 aa, chain - ## HITS:1 COG:no KEGG:c1611 NR:ns ## KEGG: c1611 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 72 13 84 84 108 97.0 5e-23 MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTINLLNALVWLAINLVNR LRERLVNHRDQQ >gi|223713578|gb|ACDM01000020.1| GENE 52 50242 - 51765 625 507 aa, chain - ## HITS:1 COG:ycgG_2 KEGG:ns NR:ns ## COG: ycgG_2 COG2200 # Protein_GI_number: 16129131 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 237 507 1 271 271 551 99.0 1e-156 MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAV NIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLL LAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTG DVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLD RYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFI PLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRD SFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHID YIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNNITFQQG YYFYKPVTYIDLVKIILSKPKVKVVVE >gi|223713578|gb|ACDM01000020.1| GENE 53 52097 - 52273 240 58 aa, chain - ## HITS:1 COG:no KEGG:B21_01150 NR:ns ## KEGG: B21_01150 # Name: ymgC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 58 25 82 82 96 100.0 3e-19 MTHGYVDSHIIDQALRLRLKDETSVILSDLYLQILQYIEMHKTTLTDIIINDRESVLS >gi|223713578|gb|ACDM01000020.1| GENE 54 52458 - 52724 207 88 aa, chain - ## HITS:1 COG:no KEGG:B21_01149 NR:ns ## KEGG: B21_01149 # Name: ymgB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 88 1 88 88 135 100.0 4e-31 MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMLSGDNVNNKNIILSLIHS LETTSDILKADVIRKTLEIVLRYTADDM >gi|223713578|gb|ACDM01000020.1| GENE 55 53068 - 53304 215 78 aa, chain - ## HITS:1 COG:no KEGG:B21_01147 NR:ns ## KEGG: B21_01147 # Name: ycgZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 78 1 78 78 140 100.0 2e-32 MHQNSVTLDSAGAITRYFAKANLHTQQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEHA TGEEEQKHYNALIGLLFE >gi|223713578|gb|ACDM01000020.1| GENE 56 53711 - 54829 524 372 aa, chain + ## HITS:1 COG:ycgF_2 KEGG:ns NR:ns ## COG: ycgF_2 COG2200 # Protein_GI_number: 16129126 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 130 372 1 243 243 480 100.0 1e-135 MQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAG MELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWL FIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKD GEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQ IIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQEL ITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKL NGIPSIAWPEKK >gi|223713578|gb|ACDM01000020.1| GENE 57 55034 - 55765 370 243 aa, chain + ## HITS:1 COG:ycgE KEGG:ns NR:ns ## COG: ycgE COG0789 # Protein_GI_number: 16129125 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 243 1 243 243 475 100.0 1e-134 MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDEEDIQRIEEIKRWISNG VPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRARIISLGREYPVDQLINHV YLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRKPGKEAILMAWNVEERARLWL EAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGMAPTRRQNELLQHWGEQGYKVIF HAP >gi|223713578|gb|ACDM01000020.1| GENE 58 55986 - 56390 128 134 aa, chain + ## HITS:1 COG:ycgX KEGG:ns NR:ns ## COG: ycgX COG5562 # Protein_GI_number: 16129124 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1 134 1 134 134 265 100.0 1e-71 MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTR NLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNT LLYIEDVENNKPLI >gi|223713578|gb|ACDM01000020.1| GENE 59 57518 - 58768 1647 416 aa, chain - ## HITS:1 COG:icd KEGG:ns NR:ns ## COG: icd COG0538 # Protein_GI_number: 16129099 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Escherichia coli K12 # 1 416 1 416 416 840 99.0 0 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGE RKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQ ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMEGAKLLKCSEFGEAIIENM >gi|223713578|gb|ACDM01000020.1| GENE 60 58970 - 59593 497 207 aa, chain + ## HITS:1 COG:ymfC KEGG:ns NR:ns ## COG: ymfC COG1187 # Protein_GI_number: 16129098 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1 207 1 207 207 400 100.0 1e-112 MQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP TLRLIRYAMGDYSLDNLANGEWREVTD >gi|223713578|gb|ACDM01000020.1| GENE 61 59603 - 60064 431 153 aa, chain + ## HITS:1 COG:ECs1606 KEGG:ns NR:ns ## COG: ECs1606 COG0494 # Protein_GI_number: 15830860 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 153 1 153 153 314 100.0 3e-86 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISA QPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRS PLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI >gi|223713578|gb|ACDM01000020.1| GENE 62 60118 - 61224 1286 368 aa, chain + ## HITS:1 COG:trmU KEGG:ns NR:ns ## COG: trmU COG0482 # Protein_GI_number: 16129096 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Escherichia coli K12 # 1 368 16 383 383 748 100.0 0 MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQA VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG ADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRK IAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTL GQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPF TGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGII EQRLPLPV >gi|223713578|gb|ACDM01000020.1| GENE 63 61260 - 61901 760 213 aa, chain + ## HITS:1 COG:ycfC KEGG:ns NR:ns ## COG: ycfC COG2915 # Protein_GI_number: 16129095 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in purine metabolism # Organism: Escherichia coli K12 # 1 213 1 213 213 380 100.0 1e-105 MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEA NLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQL EHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVL WHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL >gi|223713578|gb|ACDM01000020.1| GENE 64 61905 - 63275 1612 456 aa, chain + ## HITS:1 COG:purB KEGG:ns NR:ns ## COG: purB COG0015 # Protein_GI_number: 16129094 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Escherichia coli K12 # 1 456 1 456 456 931 100.0 0 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFA ADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFA CTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTI GKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPH KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQST LKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMK QFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK >gi|223713578|gb|ACDM01000020.1| GENE 65 63444 - 64115 885 223 aa, chain + ## HITS:1 COG:phoP KEGG:ns NR:ns ## COG: phoP COG0745 # Protein_GI_number: 16129093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 223 1 223 223 417 100.0 1e-117 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR >gi|223713578|gb|ACDM01000020.1| GENE 66 64115 - 65575 1196 486 aa, chain + ## HITS:1 COG:phoQ KEGG:ns NR:ns ## COG: phoQ COG0642 # Protein_GI_number: 16129092 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 486 1 486 486 956 100.0 0 MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFY TLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFH EIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDT IPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLN PATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSV SDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGV NISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGI PLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH SAPKDE >gi|223713578|gb|ACDM01000020.1| GENE 67 65651 - 66772 1231 373 aa, chain + ## HITS:1 COG:ycfD KEGG:ns NR:ns ## COG: ycfD COG2850 # Protein_GI_number: 16129091 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 373 4 376 376 749 100.0 0 MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGK WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG GVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILY IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPA DVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQG EVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAML AALVNSGYWFFEG >gi|223713578|gb|ACDM01000020.1| GENE 68 66821 - 68047 1485 408 aa, chain - ## HITS:1 COG:pepT KEGG:ns NR:ns ## COG: pepT COG2195 # Protein_GI_number: 16129090 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli K12 # 1 408 1 408 408 835 100.0 0 MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMA TLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVL HQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAK HFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAAR IHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKK VGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQ LSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK >gi|223713578|gb|ACDM01000020.1| GENE 69 68315 - 69433 1202 372 aa, chain + ## HITS:1 COG:ECs1571 KEGG:ns NR:ns ## COG: ECs1571 COG3842 # Protein_GI_number: 15830825 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 372 7 378 378 733 99.0 0 MNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL ETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP RVMEALRMVQLETFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQM QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVAG FIGEINMFNATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEIND DNHAEGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAINWVE SWEVVLADEEHK >gi|223713578|gb|ACDM01000020.1| GENE 70 69417 - 70274 1028 285 aa, chain + ## HITS:1 COG:ECs1570 KEGG:ns NR:ns ## COG: ECs1570 COG1176 # Protein_GI_number: 15830824 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli O157:H7 # 1 281 1 281 287 467 99.0 1e-131 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPL YFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGL KIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPL LEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE >gi|223713578|gb|ACDM01000020.1| GENE 71 70271 - 71065 899 264 aa, chain + ## HITS:1 COG:ECs1500 KEGG:ns NR:ns ## COG: ECs1500 COG1177 # Protein_GI_number: 15830754 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli O157:H7 # 1 264 1 264 264 431 100.0 1e-121 MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYSLLMNNDSLLQAA QHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFM LLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPL AMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVL SLVMVIASQLIARDKTKGNTGDVK >gi|223713578|gb|ACDM01000020.1| GENE 72 71062 - 72108 1494 348 aa, chain + ## HITS:1 COG:potD KEGG:ns NR:ns ## COG: potD COG0687 # Protein_GI_number: 16129086 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1 348 1 348 348 652 100.0 0 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYE SNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFD PNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKL GYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAG TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAA RKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKAGR >gi|223713578|gb|ACDM01000020.1| GENE 73 72166 - 72627 307 153 aa, chain + ## HITS:1 COG:no KEGG:JW5164 NR:ns ## KEGG: JW5164 # Name: ymfA # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 140 1 140 153 276 99.0 2e-73 MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD GSWYPVIAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP >gi|223713578|gb|ACDM01000020.1| GENE 74 72624 - 73412 310 262 aa, chain + ## HITS:1 COG:no KEGG:JW1107 NR:ns ## KEGG: JW1107 # Name: ycfZ # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 262 1 262 262 484 100.0 1e-135 MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEIAHKAELFRQQTGIAPF IVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTREPRLIMITNGQVESGLDD KHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQSTPPLTYYPHPGQQHENAPPGS TNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTIANMGYQALCLYIDNSFAITRIS PLWAGLIGVCTFIAALLLTSKR >gi|223713578|gb|ACDM01000020.1| GENE 75 73532 - 74371 742 279 aa, chain - ## HITS:1 COG:ycfY KEGG:ns NR:ns ## COG: ycfY COG0846 # Protein_GI_number: 16129083 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Escherichia coli K12 # 1 279 1 279 279 555 100.0 1e-158 MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAGISAESGIRTF RAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDAL GDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFP APLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELN LEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA >gi|223713578|gb|ACDM01000020.1| GENE 76 74387 - 75298 842 303 aa, chain - ## HITS:1 COG:ycfX KEGG:ns NR:ns ## COG: ycfX COG1940 # Protein_GI_number: 16129082 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1 303 1 303 303 625 100.0 1e-179 MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEADQRFGCKGSV GIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFT QYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRLPVDALTMMGLDFPLRRCGCG QHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNI LTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH LTD >gi|223713578|gb|ACDM01000020.1| GENE 77 75327 - 76565 1303 412 aa, chain - ## HITS:1 COG:lolE KEGG:ns NR:ns ## COG: lolE COG4591 # Protein_GI_number: 16129081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Escherichia coli K12 # 1 412 3 414 414 759 100.0 0 MPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAV VPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQ EQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQP KRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAG EVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDI AVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLS SDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ >gi|223713578|gb|ACDM01000020.1| GENE 78 76571 - 77272 226 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 216 9 210 309 91 29 1e-17 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA EINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE >gi|223713578|gb|ACDM01000020.1| GENE 79 77265 - 78464 1312 399 aa, chain - ## HITS:1 COG:ECs1494 KEGG:ns NR:ns ## COG: ECs1494 COG4591 # Protein_GI_number: 15830748 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Escherichia coli O157:H7 # 1 399 1 399 399 703 99.0 0 MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNIL GLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPA QKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPS QRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL PEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAIL QTQGLTPRQIMMVFMVQGASAGIIGAILGVALGALLASQLNNLMPIIGVLLDGAALPVAI EPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE >gi|223713578|gb|ACDM01000020.1| GENE 80 78726 - 79799 1082 357 aa, chain + ## HITS:1 COG:ycfT KEGG:ns NR:ns ## COG: ycfT COG4763 # Protein_GI_number: 16129078 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 357 1 357 357 630 100.0 0 MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMP VFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSN ASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNF VPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTIS LLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMN AARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR >gi|223713578|gb|ACDM01000020.1| GENE 81 79927 - 83373 3852 1148 aa, chain + ## HITS:1 COG:mfd KEGG:ns NR:ns ## COG: mfd COG1197 # Protein_GI_number: 16129077 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Escherichia coli K12 # 1 1148 1 1148 1148 2282 100.0 0 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR ELEENAIA >gi|223713578|gb|ACDM01000020.1| GENE 82 83520 - 84479 865 319 aa, chain + ## HITS:1 COG:ECs1491 KEGG:ns NR:ns ## COG: ECs1491 COG1376 # Protein_GI_number: 15830745 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 319 2 320 320 598 100.0 1e-171 MIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAK KYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKN SVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPD NPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNII NTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMD VRSGMPVDVRRHQVSPQTL >gi|223713578|gb|ACDM01000020.1| GENE 83 84561 - 84818 276 85 aa, chain - ## HITS:1 COG:no KEGG:ECO103_1157 NR:ns ## KEGG: ECO103_1157 # Name: ycfR # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 85 1 85 85 127 100.0 9e-29 MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADE MGAKSFRITSVTGPNTLHGTAVIYK >gi|223713578|gb|ACDM01000020.1| GENE 84 85059 - 85691 469 210 aa, chain + ## HITS:1 COG:ycfQ KEGG:ns NR:ns ## COG: ycfQ COG1309 # Protein_GI_number: 16129074 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 210 27 236 236 430 100.0 1e-120 MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEF TNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMI NNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCIIQG MSISAREGASLEKLMQIAGTTLRLWPELVK >gi|223713578|gb|ACDM01000020.1| GENE 85 85753 - 86292 571 179 aa, chain - ## HITS:1 COG:ycfJ KEGG:ns NR:ns ## COG: ycfJ COG3134 # Protein_GI_number: 16129073 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Escherichia coli K12 # 1 179 1 179 179 300 100.0 1e-81 MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIKETVKTPRQECRNVTVT HRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQESD TYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRDPGTQIPLDSNGQLILNNKV >gi|223713578|gb|ACDM01000020.1| GENE 86 86502 - 87806 1372 434 aa, chain - ## HITS:1 COG:ndh KEGG:ns NR:ns ## COG: ndh COG1252 # Protein_GI_number: 16129072 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Escherichia coli K12 # 1 434 1 434 434 863 100.0 0 MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLD EGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVM ALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGA TGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLG VRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEP TLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKNYQYK DHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLV GSINRVIRPRLKLH >gi|223713578|gb|ACDM01000020.1| GENE 87 88206 - 88748 562 180 aa, chain - ## HITS:1 COG:ECs1486 KEGG:ns NR:ns ## COG: ECs1486 COG3150 # Protein_GI_number: 15830740 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1 180 20 199 199 375 100.0 1e-104 MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDE RPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFR EKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG >gi|223713578|gb|ACDM01000020.1| GENE 88 88771 - 89796 1034 341 aa, chain - ## HITS:1 COG:ycfO KEGG:ns NR:ns ## COG: ycfO COG1472 # Protein_GI_number: 16129070 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Escherichia coli K12 # 1 341 1 341 341 679 100.0 0 MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRELVRQIRAASRNRLVVA VDQEGGRVQRFREGFTRLPAAQSFAALSGMEEGGKLAQEAGWLMASEMIAMDIDISFAPV LDVGHISAAIGERSYHADPQKALAIASRFIDGMHEAGMKTTGKHFPGHGAVTADSHKETP CDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSDVDPRPASGSPYWLKTVLRQELG FDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPIKAERV TRLYHKGSFSRQELMDSARWKAISTRLNQLHERWQEEKAGH >gi|223713578|gb|ACDM01000020.1| GENE 89 89807 - 90631 287 274 aa, chain - ## HITS:1 COG:ycfN KEGG:ns NR:ns ## COG: ycfN COG0510 # Protein_GI_number: 16129069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Escherichia coli K12 # 1 274 1 274 274 528 100.0 1e-150 MPFRSNNPITRDELLSRFFPQYHPVTTFNSGLSGGSFLIEHQGQRFVVRQPHDPDAPQSA FLRQYRALSQLPACIAPKPHLYLRDWMVVDYLPGAVKTYLPDTNELAGLLYYLHQQPRFG WRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRPLRLSPLHMDVHAGNLVHSAS GLKLIDWEYAGDGDIALELAAVWVENTEQHRQLVNDYATRAKIYPAQLWRQVRRWFPWLL MLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ >gi|223713578|gb|ACDM01000020.1| GENE 90 90612 - 91253 585 213 aa, chain - ## HITS:1 COG:ECs1483 KEGG:ns NR:ns ## COG: ECs1483 COG3417 # Protein_GI_number: 15830737 # Func_class: R General function prediction only # Function: Collagen-binding surface adhesin SpaP (antigen I/II family) # Organism: Escherichia coli O157:H7 # 1 213 1 213 213 367 100.0 1e-102 MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG PIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ >gi|223713578|gb|ACDM01000020.1| GENE 91 91267 - 91644 197 125 aa, chain - ## HITS:1 COG:ycfL KEGG:ns NR:ns ## COG: ycfL COG5633 # Protein_GI_number: 16129067 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli K12 # 1 125 1 125 125 227 100.0 4e-60 MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPFLSTSDIQPSA SSTLYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKVR LYLYL >gi|223713578|gb|ACDM01000020.1| GENE 92 91647 - 92006 470 119 aa, chain - ## HITS:1 COG:ECs1481 KEGG:ns NR:ns ## COG: ECs1481 COG0537 # Protein_GI_number: 15830735 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Escherichia coli O157:H7 # 1 119 1 119 119 205 100.0 2e-53 MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQ ALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKGL >gi|223713578|gb|ACDM01000020.1| GENE 93 92340 - 93099 663 253 aa, chain + ## HITS:1 COG:ECs1480 KEGG:ns NR:ns ## COG: ECs1480 COG4773 # Protein_GI_number: 15830734 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid # Organism: Escherichia coli O157:H7 # 1 253 1 253 729 490 100.0 1e-138 MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETVIVEGSATAPDDGENDY SVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALY YSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEVVRGATGLMTGTGNPSAAINM VRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDGKIRARIVGGYQNNDSWLDRYNS EKTFFSGIVDADL Prediction of potential genes in microbial genomes Time: Mon May 16 18:48:56 2011 Seq name: gi|223713577|gb|ACDM01000021.1| Escherichia sp. 4_1_40B cont1.21, whole genome shotgun sequence Length of sequence - 63218 bp Number of predicted genes - 70, with homology - 68 Number of transcription units - 33, operones - 16 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 178 - 1434 189 ## PROTEIN SUPPORTED gi|145633184|ref|ZP_01788915.1| putative hydroxamate-type ferrisiderophore receptor + Term 1452 - 1481 2.8 - Term 1439 - 1469 3.0 2 2 Tu 1 . - CDS 1494 - 2927 1707 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 3022 - 3081 5.6 3 3 Op 1 10/0.000 - CDS 3222 - 4019 834 ## COG0084 Mg-dependent DNase 4 3 Op 2 22/0.000 - CDS 4030 - 5034 730 ## COG0470 ATPase involved in DNA replication 5 3 Op 3 10/0.000 - CDS 5031 - 5672 744 ## COG0125 Thymidylate kinase 6 3 Op 4 6/0.300 - CDS 5662 - 6684 1112 ## COG1559 Predicted periplasmic solute-binding protein 7 3 Op 5 5/0.400 - CDS 6687 - 7496 508 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 7516 - 7575 2.9 - Term 7563 - 7590 -0.1 8 4 Op 1 27/0.000 - CDS 7616 - 8857 1246 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase - Prom 8878 - 8937 1.9 - Term 8896 - 8936 9.2 9 4 Op 2 22/0.000 - CDS 8945 - 9181 417 ## COG0236 Acyl carrier protein - Prom 9220 - 9279 4.9 - Term 9337 - 9363 -0.6 10 4 Op 3 26/0.000 - CDS 9392 - 10126 252 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 11 4 Op 4 14/0.000 - CDS 10139 - 11068 1025 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 12 4 Op 5 16/0.000 - CDS 11084 - 12037 917 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 13 4 Op 6 14/0.000 - CDS 12105 - 13145 577 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 14 4 Op 7 20/0.000 - CDS 13256 - 13429 292 ## PROTEIN SUPPORTED gi|15801206|ref|NP_287223.1| 50S ribosomal protein L32 15 4 Op 8 . - CDS 13481 - 14002 468 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 14147 - 14206 5.4 + Prom 13977 - 14036 3.1 16 5 Tu 1 . + CDS 14162 - 14785 458 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 17 6 Tu 1 . - CDS 14897 - 15856 190 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 15957 - 16016 3.6 18 7 Tu 1 . + CDS 16429 - 19614 3141 ## COG1530 Ribonucleases G and E + Term 19636 - 19667 3.2 - Term 19728 - 19768 7.1 19 8 Op 1 21/0.000 - CDS 19810 - 20763 1032 ## COG1344 Flagellin and related hook-associated proteins 20 8 Op 2 9/0.000 - CDS 20775 - 22418 1524 ## COG1256 Flagellar hook-associated protein 21 8 Op 3 7/0.300 - CDS 22484 - 23425 978 ## COG3951 Rod binding protein 22 8 Op 4 9/0.000 - CDS 23425 - 24522 938 ## COG1706 Flagellar basal-body P-ring protein 23 8 Op 5 9/0.000 - CDS 24534 - 25232 793 ## COG2063 Flagellar basal body L-ring protein - Term 25241 - 25280 2.5 24 8 Op 6 8/0.100 - CDS 25285 - 26067 987 ## COG4786 Flagellar basal body rod protein - Prom 26115 - 26174 1.7 25 9 Op 1 8/0.100 - CDS 26239 - 26994 645 ## COG4787 Flagellar basal body rod protein 26 9 Op 2 16/0.000 - CDS 27014 - 28222 1319 ## COG1749 Flagellar hook protein FlgE 27 9 Op 3 9/0.000 - CDS 28247 - 28942 787 ## COG1843 Flagellar hook capping protein 28 9 Op 4 24/0.000 - CDS 28954 - 29358 314 ## COG1558 Flagellar basal body rod protein 29 9 Op 5 . - CDS 29362 - 29778 481 ## COG1815 Flagellar basal body protein - Prom 29932 - 29991 2.3 + Prom 29851 - 29910 3.9 30 10 Op 1 8/0.100 + CDS 29954 - 30592 281 ## COG1261 Flagellar basal body P-ring biosynthesis protein 31 10 Op 2 7/0.300 + CDS 30668 - 30961 345 ## COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor) 32 10 Op 3 . + CDS 30966 - 31382 418 ## COG3418 Flagellar biosynthesis/type III secretory pathway chaperone + Term 31387 - 31430 10.2 - Term 31374 - 31414 2.7 33 11 Tu 1 5/0.400 - CDS 31422 - 32957 1012 ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 - Term 32976 - 33004 3.0 34 12 Op 1 4/0.900 - CDS 33067 - 33990 714 ## COG0673 Predicted dehydrogenases and related proteins 35 12 Op 2 5/0.400 - CDS 33992 - 34639 803 ## COG3132 Uncharacterized protein conserved in bacteria 36 12 Op 3 . - CDS 34650 - 35234 1067 ## PROTEIN SUPPORTED gi|15801183|ref|NP_287200.1| ribosomal-protein-S5-alanine N-acetyltransferase - Prom 35330 - 35389 5.5 + Prom 35382 - 35441 2.1 37 13 Op 1 1/1.000 + CDS 35470 - 36678 1190 ## COG0477 Permeases of the major facilitator superfamily 38 13 Op 2 . + CDS 36742 - 37389 685 ## COG2999 Glutaredoxin 2 + Term 37402 - 37441 8.0 39 14 Tu 1 . + CDS 37523 - 38083 650 ## APECO1_145 hypothetical protein + Term 38088 - 38119 3.2 + Prom 38093 - 38152 2.1 40 15 Op 1 . + CDS 38315 - 39235 727 ## COG0418 Dihydroorotase 41 15 Op 2 . + CDS 39309 - 39554 234 ## UTI89_C1186 DNA damage-inducible protein I + Term 39574 - 39601 1.5 + Prom 39591 - 39650 6.8 42 16 Tu 1 . + CDS 39842 - 40096 198 ## APECO1_142 biofilm formation regulatory protein BssS + Term 40121 - 40149 0.6 + Prom 40129 - 40188 2.2 43 17 Op 1 . + CDS 40211 - 41329 820 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 41339 - 41370 2.4 44 17 Op 2 . + CDS 41377 - 41490 128 ## + Term 41531 - 41571 -0.5 + Prom 41633 - 41692 8.1 45 18 Op 1 12/0.000 + CDS 41751 - 42317 299 ## COG3038 Cytochrome B561 46 18 Op 2 . + CDS 42321 - 42896 597 ## COG2353 Uncharacterized conserved protein + Term 42900 - 42952 8.2 - Term 42893 - 42931 6.9 47 19 Tu 1 . - CDS 42938 - 43990 895 ## COG1054 Predicted sulfurtransferase - Prom 44061 - 44120 5.9 + Prom 44030 - 44089 4.8 48 20 Tu 1 . + CDS 44215 - 45135 918 ## COG1560 Lauroyl/myristoyl acyltransferase + Term 45218 - 45257 0.3 + Prom 45194 - 45253 2.5 49 21 Op 1 . + CDS 45307 - 46533 782 ## COG0477 Permeases of the major facilitator superfamily 50 21 Op 2 . + CDS 46616 - 46990 495 ## G2583_1310 acidic protein MsyB + Term 47232 - 47286 4.2 51 22 Tu 1 . - CDS 46991 - 47218 285 ## COG5645 Predicted periplasmic lipoprotein - Prom 47239 - 47298 3.2 - Term 47228 - 47260 3.1 52 23 Op 1 7/0.300 - CDS 47391 - 49904 2374 ## COG2943 Membrane glycosyltransferase 53 23 Op 2 . - CDS 49927 - 51480 1604 ## COG3131 Periplasmic glucans biosynthesis protein - Prom 51520 - 51579 4.5 + Prom 51681 - 51740 1.8 54 24 Tu 1 . + CDS 51856 - 53013 745 ## B21_01051 hypothetical protein + Term 53068 - 53104 4.0 55 25 Op 1 2/0.900 - CDS 53021 - 54442 718 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 56 25 Op 2 . - CDS 54444 - 54977 342 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 55000 - 55059 1.5 57 26 Tu 1 . - CDS 55072 - 55383 265 ## JW1031 hypothetical protein 58 27 Tu 1 . - CDS 55504 - 55836 186 ## ECUMN_1217 putative autoagglutination protein - Term 55844 - 55872 1.0 59 28 Op 1 . - CDS 55895 - 56350 415 ## B21_01046 hypothetical protein 60 28 Op 2 . - CDS 56391 - 56873 292 ## ECH74115_1421 curlin minor subunit - Prom 57063 - 57122 4.0 61 29 Tu 1 . - CDS 57487 - 57633 67 ## UTI89_C1162 hypothetical protein - Prom 57808 - 57867 3.6 62 30 Op 1 . + CDS 57601 - 58251 274 ## COG2771 DNA-binding HTH domain-containing proteins 63 30 Op 2 . + CDS 58256 - 58645 171 ## APECO1_124 curli assembly protein CsgE 64 30 Op 3 . + CDS 58670 - 59086 360 ## ECDH10B_1110 curli assembly protein CsgF 65 30 Op 4 . + CDS 59113 - 59946 716 ## COG1462 Uncharacterized protein involved in formation of curli polymers + Term 59958 - 59988 0.2 - Term 59946 - 59976 0.2 66 31 Tu 1 . - CDS 60010 - 60531 529 ## SSON_1045 hypothetical protein 67 32 Tu 1 . + CDS 60500 - 60586 56 ## 68 33 Op 1 5/0.400 - CDS 60603 - 61157 717 ## COG3381 Uncharacterized component of anaerobic dehydrogenases 69 33 Op 2 3/0.900 - CDS 61181 - 61918 754 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family 70 33 Op 3 . - CDS 61973 - 62911 571 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 62971 - 63030 5.6 Predicted protein(s) >gi|223713577|gb|ACDM01000021.1| GENE 1 178 - 1434 189 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145633184|ref|ZP_01788915.1| putative hydroxamate-type ferrisiderophore receptor [Haemophilus influenzae 3655] # 186 401 494 713 737 77 27 2e-13 MTLKQQFADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTG WNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFN GNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNH TTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLT TTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGAT RYIAEDNEGNAVNPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRA EQGSYALVDLFTRYQVTKNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF >gi|223713577|gb|ACDM01000021.1| GENE 2 1494 - 2927 1707 477 aa, chain - ## HITS:1 COG:ptsG_1 KEGG:ns NR:ns ## COG: ptsG_1 COG1263 # Protein_GI_number: 16129064 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 397 1 397 397 739 100.0 0 MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMP LIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLG GIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQ TFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY MAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPI EFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIV GIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDA CITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH >gi|223713577|gb|ACDM01000021.1| GENE 3 3222 - 4019 834 265 aa, chain - ## HITS:1 COG:ECs1478 KEGG:ns NR:ns ## COG: ECs1478 COG0084 # Protein_GI_number: 15830732 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli O157:H7 # 1 265 1 265 265 528 100.0 1e-150 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERDNV VFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIG RELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIV TFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVE ELAQVTTDNFARLFHIDASRLQSIR >gi|223713577|gb|ACDM01000021.1| GENE 4 4030 - 5034 730 334 aa, chain - ## HITS:1 COG:ECs1477 KEGG:ns NR:ns ## COG: ECs1477 COG0470 # Protein_GI_number: 15830731 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 608 99.0 1e-174 MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG HCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL >gi|223713577|gb|ACDM01000021.1| GENE 5 5031 - 5672 744 213 aa, chain - ## HITS:1 COG:tmk KEGG:ns NR:ns ## COG: tmk COG0125 # Protein_GI_number: 16129061 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Escherichia coli K12 # 1 213 1 213 213 399 100.0 1e-111 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLVLDIKSV GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHML ATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQ DKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA >gi|223713577|gb|ACDM01000021.1| GENE 6 5662 - 6684 1112 340 aa, chain - ## HITS:1 COG:yceG KEGG:ns NR:ns ## COG: yceG COG1559 # Protein_GI_number: 16129060 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Escherichia coli K12 # 1 340 1 340 340 653 100.0 0 MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYAD KIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRL SDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKR AHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGM RLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAK TPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ >gi|223713577|gb|ACDM01000021.1| GENE 7 6687 - 7496 508 269 aa, chain - ## HITS:1 COG:pabC KEGG:ns NR:ns ## COG: pabC COG0115 # Protein_GI_number: 16129059 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Escherichia coli K12 # 1 269 1 269 269 551 100.0 1e-157 MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFW PQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEG ITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLF WRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMP VMPVCACGDVSFSSATLYEYLAPLCERPN >gi|223713577|gb|ACDM01000021.1| GENE 8 7616 - 8857 1246 413 aa, chain - ## HITS:1 COG:ECs1473 KEGG:ns NR:ns ## COG: ECs1473 COG0304 # Protein_GI_number: 15830727 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli O157:H7 # 1 413 1 413 413 729 100.0 0 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHT SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGY VNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRD QAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKKI >gi|223713577|gb|ACDM01000021.1| GENE 9 8945 - 9181 417 78 aa, chain - ## HITS:1 COG:ECs1472 KEGG:ns NR:ns ## COG: ECs1472 COG0236 # Protein_GI_number: 15830726 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Escherichia coli O157:H7 # 1 78 1 78 78 108 100.0 2e-24 MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA EKITTVQAAIDYINGHQA >gi|223713577|gb|ACDM01000021.1| GENE 10 9392 - 10126 252 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 243 4 242 242 101 29 9e-21 MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNV TDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKA VMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVA PGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG MYMV >gi|223713577|gb|ACDM01000021.1| GENE 11 10139 - 11068 1025 309 aa, chain - ## HITS:1 COG:fabD KEGG:ns NR:ns ## COG: fabD COG0331 # Protein_GI_number: 16129055 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Escherichia coli K12 # 1 309 1 309 309 532 100.0 1e-151 MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTW QTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF MQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAG AACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNG DAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEP SAMAAALEL >gi|223713577|gb|ACDM01000021.1| GENE 12 11084 - 12037 917 317 aa, chain - ## HITS:1 COG:ECs1469 KEGG:ns NR:ns ## COG: ECs1469 COG0332 # Protein_GI_number: 15830723 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Escherichia coli O157:H7 # 1 317 1 317 317 612 100.0 1e-175 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAAT RAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALS VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASEEPGIISTHLH ADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL LEAFGGGFTWGSALVRF >gi|223713577|gb|ACDM01000021.1| GENE 13 12105 - 13145 577 346 aa, chain - ## HITS:1 COG:ZplsX KEGG:ns NR:ns ## COG: ZplsX COG0416 # Protein_GI_number: 15801207 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Escherichia coli O157:H7 EDL933 # 1 346 1 346 346 633 99.0 0 MGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDAITPLLAKADFEQRSRLQIIPAQSVIA SDARPSQAIRASRGSSMRVALELVKEGRAQACVSAGNTGALMGLAKLLLKPLEGIERPAL VTVLPHQQKGKTVVLDLGANVDCDSTMLVQFAIMGSVLAEEVVEIPNPRVALLNIGEEEV KGLDSIRDASAVLKTIPSINYIGYLEANELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFL SLLKSQGEGKKRSWWLLLLKRWLQKSLTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQ RAFAVAIEQAVQAVQRQVPQRIAARLESVYPAGFELLDGGKSGTLR >gi|223713577|gb|ACDM01000021.1| GENE 14 13256 - 13429 292 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15801206|ref|NP_287223.1| 50S ribosomal protein L32 [Escherichia coli O157:H7 EDL933] # 1 57 1 57 57 117 100 2e-25 MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK >gi|223713577|gb|ACDM01000021.1| GENE 15 13481 - 14002 468 173 aa, chain - ## HITS:1 COG:ECs1466 KEGG:ns NR:ns ## COG: ECs1466 COG1399 # Protein_GI_number: 15830720 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Escherichia coli O157:H7 # 1 173 1 173 173 320 100.0 7e-88 MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK >gi|223713577|gb|ACDM01000021.1| GENE 16 14162 - 14785 458 207 aa, chain + ## HITS:1 COG:yceF KEGG:ns NR:ns ## COG: yceF COG0424 # Protein_GI_number: 16129050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli K12 # 1 207 1 207 207 418 100.0 1e-117 MAIINTLYLMEKNMPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQLVLR LAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTFYTGLA LFNSANGHLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHCAGSFKSEGFGITLFERLEGR DPNTLVGLPLIALCQMLRREGKNPLMG >gi|223713577|gb|ACDM01000021.1| GENE 17 14897 - 15856 190 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 95 309 83 284 285 77 29 1e-13 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI EAPMDEGLKRCLQKLRNAR >gi|223713577|gb|ACDM01000021.1| GENE 18 16429 - 19614 3141 1061 aa, chain + ## HITS:1 COG:rne KEGG:ns NR:ns ## COG: rne COG1530 # Protein_GI_number: 16129047 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Escherichia coli K12 # 1 1061 1 1061 1061 1487 100.0 0 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE >gi|223713577|gb|ACDM01000021.1| GENE 19 19810 - 20763 1032 317 aa, chain - ## HITS:1 COG:flgL KEGG:ns NR:ns ## COG: flgL COG1344 # Protein_GI_number: 16129046 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Escherichia coli K12 # 1 317 1 317 317 514 100.0 1e-146 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQ LLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGHTGDKIF DSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS YKAFTDMQGLSLFQLSK >gi|223713577|gb|ACDM01000021.1| GENE 20 20775 - 22418 1524 547 aa, chain - ## HITS:1 COG:flgK KEGG:ns NR:ns ## COG: flgK COG1256 # Protein_GI_number: 16129045 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Escherichia coli K12 # 1 547 1 547 547 884 100.0 0 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI VNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF DALINIR >gi|223713577|gb|ACDM01000021.1| GENE 21 22484 - 23425 978 313 aa, chain - ## HITS:1 COG:flgJ_1 KEGG:ns NR:ns ## COG: flgJ_1 COG3951 # Protein_GI_number: 16129044 # Func_class: M Cell wall/membrane/envelope biogenesis; N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Rod binding protein # Organism: Escherichia coli K12 # 1 167 1 167 167 291 100.0 1e-78 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK VSKTYSMNIDNLF >gi|223713577|gb|ACDM01000021.1| GENE 22 23425 - 24522 938 365 aa, chain - ## HITS:1 COG:flgI KEGG:ns NR:ns ## COG: flgI COG1706 # Protein_GI_number: 16129043 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Escherichia coli K12 # 1 365 1 365 365 556 100.0 1e-158 MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQ TLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGT LLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFG VGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDARTIQVRVPSGNSSQVRFLADIQ NMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPDTPFGGG QTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLRA KLEII >gi|223713577|gb|ACDM01000021.1| GENE 23 24534 - 25232 793 232 aa, chain - ## HITS:1 COG:ECs1457 KEGG:ns NR:ns ## COG: ECs1457 COG2063 # Protein_GI_number: 15830711 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Escherichia coli O157:H7 # 1 232 1 232 232 412 100.0 1e-115 MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM >gi|223713577|gb|ACDM01000021.1| GENE 24 25285 - 26067 987 260 aa, chain - ## HITS:1 COG:ECs1456 KEGG:ns NR:ns ## COG: ECs1456 COG4786 # Protein_GI_number: 15830710 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli O157:H7 # 1 260 1 260 260 434 100.0 1e-122 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY EINSKAVSTTDQMLQKLTQL >gi|223713577|gb|ACDM01000021.1| GENE 25 26239 - 26994 645 251 aa, chain - ## HITS:1 COG:flgF KEGG:ns NR:ns ## COG: flgF COG4787 # Protein_GI_number: 16129040 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli K12 # 1 251 1 251 251 418 100.0 1e-117 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTAS TPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPV IGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFR LSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN AGRANQLLSMS >gi|223713577|gb|ACDM01000021.1| GENE 26 27014 - 28222 1319 402 aa, chain - ## HITS:1 COG:flgE KEGG:ns NR:ns ## COG: flgE COG1749 # Protein_GI_number: 16129039 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Escherichia coli K12 # 1 402 1 402 402 620 100.0 1e-177 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQD FTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYP ATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNADSYNK KGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGTLVDGA MANNIATGAINGAEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVSYQINDDGTVV GNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGAL EASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR >gi|223713577|gb|ACDM01000021.1| GENE 27 28247 - 28942 787 231 aa, chain - ## HITS:1 COG:ECs1453 KEGG:ns NR:ns ## COG: ECs1453 COG1843 # Protein_GI_number: 15830707 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Escherichia coli O157:H7 # 1 231 1 231 231 312 99.0 3e-85 MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN VAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII >gi|223713577|gb|ACDM01000021.1| GENE 28 28954 - 29358 314 134 aa, chain - ## HITS:1 COG:ECs1452 KEGG:ns NR:ns ## COG: ECs1452 COG1558 # Protein_GI_number: 15830706 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli O157:H7 # 1 134 1 134 134 223 100.0 8e-59 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN TVKSMMLKTLTLGQ >gi|223713577|gb|ACDM01000021.1| GENE 29 29362 - 29778 481 138 aa, chain - ## HITS:1 COG:flgB KEGG:ns NR:ns ## COG: flgB COG1815 # Protein_GI_number: 16129036 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Escherichia coli K12 # 1 138 1 138 138 228 100.0 2e-60 MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDIDFASELKKVMQRGRDAT SVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDMDRERTQFADNSLQYQMSL SALSGQIKGMMNVLQSGN >gi|223713577|gb|ACDM01000021.1| GENE 30 29954 - 30592 281 212 aa, chain + ## HITS:1 COG:flgA KEGG:ns NR:ns ## COG: flgA COG1261 # Protein_GI_number: 16129035 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Escherichia coli K12 # 1 212 8 219 219 366 99.0 1e-101 MAIIAILFSPLSTASNLTSQLHNFFSAQLAGVSDEVRVSIRTAPNLLPPCEQPLLSMSNN SRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAMPIARGGKLEAGNVKLKRGRLDTLPP RTVLDINQLVDAISLRDLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALN NAAVAQNARVRMVSGQVVSGVVDADGNILINL >gi|223713577|gb|ACDM01000021.1| GENE 31 30668 - 30961 345 97 aa, chain + ## HITS:1 COG:flgM KEGG:ns NR:ns ## COG: flgM COG2747 # Protein_GI_number: 16129034 # Func_class: K Transcription; N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Negative regulator of flagellin synthesis (anti-sigma28 factor) # Organism: Escherichia coli K12 # 1 97 1 97 97 123 100.0 8e-29 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN >gi|223713577|gb|ACDM01000021.1| GENE 32 30966 - 31382 418 138 aa, chain + ## HITS:1 COG:flgN KEGG:ns NR:ns ## COG: flgN COG3418 # Protein_GI_number: 16129033 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis/type III secretory pathway chaperone # Organism: Escherichia coli K12 # 1 138 1 138 138 209 99.0 1e-54 MTRLAGILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITEQKSSLLATLDYLEQLR RKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIERNQQALEMLKPHQEPTLY GANGQTSTTHRGGKKISI >gi|223713577|gb|ACDM01000021.1| GENE 33 31422 - 32957 1012 511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 3 502 5 516 524 394 40 1e-109 MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAF SQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADT ADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAP YFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMRVVKQMGPAILGV SVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNH DEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALMTQRALIAYSVG LIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACL NASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEWSLGTMPWRLLR LMAVVLAGIAAYFAALAVLGFKVKEFARRTV >gi|223713577|gb|ACDM01000021.1| GENE 34 33067 - 33990 714 307 aa, chain - ## HITS:1 COG:mviM KEGG:ns NR:ns ## COG: mviM COG0673 # Protein_GI_number: 16129031 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 307 1 307 307 622 100.0 1e-178 MKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL AASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG FNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKA SLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMRE WREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKI WRDAMSE >gi|223713577|gb|ACDM01000021.1| GENE 35 33992 - 34639 803 215 aa, chain - ## HITS:1 COG:yceH KEGG:ns NR:ns ## COG: yceH COG3132 # Protein_GI_number: 16129030 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 215 1 215 215 397 100.0 1e-111 MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLD NLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSR AARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRENRYMHLFSGEVEDQPAVTDM SNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD >gi|223713577|gb|ACDM01000021.1| GENE 36 34650 - 35234 1067 194 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15801183|ref|NP_287200.1| ribosomal-protein-S5-alanine N-acetyltransferase [Escherichia coli O157:H7 EDL933] # 1 194 1 194 194 415 100 1e-115 MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQ ARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSFHACYLGYSIGQKWQGKGL MFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDH VLTALTTPDWTPGR >gi|223713577|gb|ACDM01000021.1| GENE 37 35470 - 36678 1190 402 aa, chain + ## HITS:1 COG:yceL KEGG:ns NR:ns ## COG: yceL COG0477 # Protein_GI_number: 16129028 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 402 11 412 412 701 100.0 0 MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWAAVMVGIALGLRQFIQQ GLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLLWFSCLLSGLGGTLFDPPR SALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLCAAF NAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDVAG APSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLMAGLLIMSLSMMPVGMVSGLQQL FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAIGGAIGYIGGGWLFDLG KSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAARRLLERDA >gi|223713577|gb|ACDM01000021.1| GENE 38 36742 - 37389 685 215 aa, chain + ## HITS:1 COG:ECs1442 KEGG:ns NR:ns ## COG: ECs1442 COG2999 # Protein_GI_number: 15830696 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin 2 # Organism: Escherichia coli O157:H7 # 1 215 1 215 215 426 99.0 1e-119 MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMP ESMDIVHYVDKLNGKPLLTGKRSPAIEEWLRKVNGYANKLLLPRFAKSAFDEFSTPAARK YFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLR NLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI >gi|223713577|gb|ACDM01000021.1| GENE 39 37523 - 38083 650 186 aa, chain + ## HITS:1 COG:no KEGG:APECO1_145 NR:ns ## KEGG: APECO1_145 # Name: yceB # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 186 20 205 205 353 100.0 2e-96 MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTN LTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVD ATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEI VIPFTD >gi|223713577|gb|ACDM01000021.1| GENE 40 38315 - 39235 727 306 aa, chain + ## HITS:1 COG:pyrC KEGG:ns NR:ns ## COG: pyrC COG0418 # Protein_GI_number: 16129025 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase # Organism: Escherichia coli K12 # 1 306 43 348 348 630 100.0 1e-180 MPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAA KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVM EPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLYC LPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYATV FEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLVPFLAGETV RWSVKQ >gi|223713577|gb|ACDM01000021.1| GENE 41 39309 - 39554 234 81 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C1186 NR:ns ## KEGG: UTI89_C1186 # Name: not_defined # Def: DNA damage-inducible protein I # Organism: E.coli_UTI89 # Pathway: not_defined # 1 81 20 100 100 156 100.0 2e-37 MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDK QRISEILQETWESADDWFVSE >gi|223713577|gb|ACDM01000021.1| GENE 42 39842 - 40096 198 84 aa, chain + ## HITS:1 COG:no KEGG:APECO1_142 NR:ns ## KEGG: APECO1_142 # Name: bssS, yceP # Def: biofilm formation regulatory protein BssS # Organism: E.coli_APEC # Pathway: not_defined # 1 84 2 85 85 164 100.0 1e-39 MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGTEVGQTLWLTTDVARQF ISILEAGIAKIESGDFQVNEYRRH >gi|223713577|gb|ACDM01000021.1| GENE 43 40211 - 41329 820 372 aa, chain + ## HITS:1 COG:solA KEGG:ns NR:ns ## COG: solA COG0665 # Protein_GI_number: 16129022 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1 372 1 372 372 786 100.0 0 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKY VPLVLRAQTLWDELSRHNEEDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQ GIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD GVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTG ELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVASDGSEAFPFLRNVLPGIG CCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSD FDLTPFRLSRFQ >gi|223713577|gb|ACDM01000021.1| GENE 44 41377 - 41490 128 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF >gi|223713577|gb|ACDM01000021.1| GENE 45 41751 - 42317 299 188 aa, chain + ## HITS:1 COG:yceJ KEGG:ns NR:ns ## COG: yceJ COG3038 # Protein_GI_number: 16129020 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli K12 # 1 188 1 188 188 346 100.0 2e-95 MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLM MGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPIS VFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLG KSSSDYGV >gi|223713577|gb|ACDM01000021.1| GENE 46 42321 - 42896 597 191 aa, chain + ## HITS:1 COG:ECs1434 KEGG:ns NR:ns ## COG: ECs1434 COG2353 # Protein_GI_number: 15830688 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 360 100.0 1e-99 MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFT FDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELD ITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLGPASQEVD LIISVEGVQQK >gi|223713577|gb|ACDM01000021.1| GENE 47 42938 - 43990 895 350 aa, chain - ## HITS:1 COG:yceA KEGG:ns NR:ns ## COG: yceA COG1054 # Protein_GI_number: 16129018 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Escherichia coli K12 # 1 350 1 350 350 742 100.0 0 MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYL AHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVAD GIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQ LPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYK GCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE >gi|223713577|gb|ACDM01000021.1| GENE 48 44215 - 45135 918 306 aa, chain + ## HITS:1 COG:ECs1432 KEGG:ns NR:ns ## COG: ECs1432 COG1560 # Protein_GI_number: 15830686 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 618 100.0 1e-177 MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGLGKLALRFMKRRAKIVH RNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDRRIARWTEVIGMEHIRDVQ AQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPLIDWLQTWGRLRSNKSMLDRK DLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQAATTTGTWMLARMSGACLVPFV PRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKVVEKCIMMAPEQYMWLHRRFKTRPE GVPSRY >gi|223713577|gb|ACDM01000021.1| GENE 49 45307 - 46533 782 408 aa, chain + ## HITS:1 COG:yceE KEGG:ns NR:ns ## COG: yceE COG0477 # Protein_GI_number: 16129016 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 408 1 408 408 715 100.0 0 MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVF SITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITAS VLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAP ILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL LLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVSN >gi|223713577|gb|ACDM01000021.1| GENE 50 46616 - 46990 495 124 aa, chain + ## HITS:1 COG:no KEGG:G2583_1310 NR:ns ## KEGG: G2583_1310 # Name: msyB # Def: acidic protein MsyB # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 124 2 125 125 183 100.0 1e-45 MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQDGDIMWQVEFFADEGEE GECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEGRAAADE WDER >gi|223713577|gb|ACDM01000021.1| GENE 51 46991 - 47218 285 75 aa, chain - ## HITS:1 COG:ECs1428 KEGG:ns NR:ns ## COG: ECs1428 COG5645 # Protein_GI_number: 15830682 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 1 75 1 75 75 147 100.0 3e-36 MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYVTILDLPFSLVF DTLLLPIDIHHGPYE >gi|223713577|gb|ACDM01000021.1| GENE 52 47391 - 49904 2374 837 aa, chain - ## HITS:1 COG:ECs1427 KEGG:ns NR:ns ## COG: ECs1427 COG2943 # Protein_GI_number: 15830681 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane glycosyltransferase # Organism: Escherichia coli O157:H7 # 1 837 21 857 857 1678 100.0 0 MPIAASEKAALPKTDIRAVHQALDAEHRTWAREDDSPQGSVKARLEQAWPDSLADGQLIK DDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRFWDRLRGRDVTPRYLARLTKEEQESEQKW RTVGTIRRYILLILTLAQTVVATWYMKTILPYQGWALINPMDMVGQDLWVSFMQLLPYML QTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNPEHRTALIMPI CNEDVNRVFAGLRATWESVKATGNAKHFDVYILSDSYNPDICVAEQKAWMELIAEVGGEG QIFYRRRRRRVKRKSGNIDDFCRRWGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAG IIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHC ALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRW CHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFL QPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLE VLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWA VGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVD TDRFLEMNRQRSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETP EKLNRDRRLVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ >gi|223713577|gb|ACDM01000021.1| GENE 53 49927 - 51480 1604 517 aa, chain - ## HITS:1 COG:mdoG KEGG:ns NR:ns ## COG: mdoG COG3131 # Protein_GI_number: 16129011 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Escherichia coli K12 # 7 517 1 511 511 1032 100.0 0 MKHKLQMMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYETPKSNLPSVFRDM KYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFT FGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLA IDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQS KIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIWRPLNNP KHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGEWGKGSVELVEIP TNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHAPDNAWVQQTRRSTGDVKQ SNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTSIGDNGEIVESTVRYNPVTKGWRLV MRVKVKDAKKTTEMRAALVNADQTLSETWSYQLPANE >gi|223713577|gb|ACDM01000021.1| GENE 54 51856 - 53013 745 385 aa, chain + ## HITS:1 COG:no KEGG:B21_01051 NR:ns ## KEGG: B21_01051 # Name: mdoC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 385 1 385 385 704 100.0 0 MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAESSLWLTLFNDFIHSFRM QVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLPQFIMLQYVKGKAESW PGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRIRNNLENSDKTNKKFSMVKLS VIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTLFYLPFFILGALAFIFPHLKALF TTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETESVITMVLGLWMVNVVFSFGHRLLNF QSARVTYFVNASLFIYLVHHPLTLFFGAYITPHITSNWLGFLCGLIFVVGIAIILYEIHL RIPLLKFLFSGKPVVKRENDKAPAR >gi|223713577|gb|ACDM01000021.1| GENE 55 53021 - 54442 718 473 aa, chain - ## HITS:1 COG:ymdC KEGG:ns NR:ns ## COG: ymdC COG1502 # Protein_GI_number: 16129009 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli K12 # 1 473 21 493 493 948 99.0 0 MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRL LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY DAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL >gi|223713577|gb|ACDM01000021.1| GENE 56 54444 - 54977 342 177 aa, chain - ## HITS:1 COG:ECs1423 KEGG:ns NR:ns ## COG: ECs1423 COG2110 # Protein_GI_number: 15830677 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Escherichia coli O157:H7 # 1 177 1 177 177 347 100.0 5e-96 MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE >gi|223713577|gb|ACDM01000021.1| GENE 57 55072 - 55383 265 103 aa, chain - ## HITS:1 COG:no KEGG:JW1031 NR:ns ## KEGG: JW1031 # Name: ymdA # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 103 1 103 103 196 100.0 2e-49 MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS IPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN >gi|223713577|gb|ACDM01000021.1| GENE 58 55504 - 55836 186 110 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_1217 NR:ns ## KEGG: ECUMN_1217 # Name: csgC # Def: putative autoagglutination protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 110 54 163 163 159 98.0 2e-38 MNTLLLLAALSSQITFNTTQQGDVYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEK TLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPPSSEKS >gi|223713577|gb|ACDM01000021.1| GENE 59 55895 - 56350 415 151 aa, chain - ## HITS:1 COG:no KEGG:B21_01046 NR:ns ## KEGG: B21_01046 # Name: csgA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 151 1 151 151 187 100.0 1e-46 MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSELNIYQYGGGNSALALQ TDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSATLDQWNGKNSEMTVKQFGG GNGAAVDQTASNSSVNVTQVGFGNNATAHQY >gi|223713577|gb|ACDM01000021.1| GENE 60 56391 - 56873 292 160 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_1421 NR:ns ## KEGG: ECH74115_1421 # Name: csgB # Def: curlin minor subunit # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 160 1 160 160 223 100.0 1e-57 MYDQVQGDNMKNKLLFMMLTILGAPGIAAAAGYDLANSEYNFAVNELSKSSFNQAAIIGQ AGTNNSAQLRQGGSKLLAVVAQEGSSNRAKIDQTGDYNLAYIDQAGSANDASISQGAYGN TAMIIQKGSGNKANITQYGTQKTAIVVQRQSQMAIRVTQR >gi|223713577|gb|ACDM01000021.1| GENE 61 57487 - 57633 67 48 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C1162 NR:ns ## KEGG: UTI89_C1162 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 3 48 1 46 46 75 100.0 7e-13 MTMNTMDFIKHDETPLFLLIAHLTAASKIEAPEVLTDVALLCVVINQP >gi|223713577|gb|ACDM01000021.1| GENE 62 57601 - 58251 274 216 aa, chain + ## HITS:1 COG:ECs1417 KEGG:ns NR:ns ## COG: ECs1417 COG2771 # Protein_GI_number: 15830671 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 402 99.0 1e-112 MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNG LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR >gi|223713577|gb|ACDM01000021.1| GENE 63 58256 - 58645 171 129 aa, chain + ## HITS:1 COG:no KEGG:APECO1_124 NR:ns ## KEGG: APECO1_124 # Name: csgE # Def: curli assembly protein CsgE # Organism: E.coli_APEC # Pathway: not_defined # 1 129 1 129 129 256 100.0 2e-67 MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESDYTGNLT INERPSARWGSWITITVNQDVIFQTFLFPLKRDFEKTVVFALIQTEEALNRRQINQALLS TGDLAHDEF >gi|223713577|gb|ACDM01000021.1| GENE 64 58670 - 59086 360 138 aa, chain + ## HITS:1 COG:no KEGG:ECDH10B_1110 NR:ns ## KEGG: ECDH10B_1110 # Name: csgF # Def: curli assembly protein CsgF # Organism: E.coli_DH10B # Pathway: not_defined # 1 138 1 138 138 225 100.0 3e-58 MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQAQNSYKDPSYNDDF GIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNDYIVDIANRDGQLQLNVTDRKT GQTSTIQVSGLQNNSTDF >gi|223713577|gb|ACDM01000021.1| GENE 65 59113 - 59946 716 277 aa, chain + ## HITS:1 COG:ECs1414 KEGG:ns NR:ns ## COG: ECs1414 COG1462 # Protein_GI_number: 15830668 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in formation of curli polymers # Organism: Escherichia coli O157:H7 # 1 277 1 277 277 550 100.0 1e-156 MQRLFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDET GQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQNLLNERKIIRAAQENGTV AINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFGIGADTQYQLDQIAVNLRVVN VSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEVGYTSNEPVMLCLMSAIETGVI FLINDGIDRGLWDLQNKAERQNDILVKYRHMSVPPES >gi|223713577|gb|ACDM01000021.1| GENE 66 60010 - 60531 529 173 aa, chain - ## HITS:1 COG:no KEGG:SSON_1045 NR:ns ## KEGG: SSON_1045 # Name: ycdZ # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 173 7 179 179 280 99.0 1e-74 MAAFSAIMRGMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGL AISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIG ACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA >gi|223713577|gb|ACDM01000021.1| GENE 67 60500 - 60586 56 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRMIAENAAMNEIEHTFYATTNYPLQL >gi|223713577|gb|ACDM01000021.1| GENE 68 60603 - 61157 717 184 aa, chain - ## HITS:1 COG:ycdY KEGG:ns NR:ns ## COG: ycdY COG3381 # Protein_GI_number: 16128998 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli K12 # 1 184 1 184 184 349 100.0 2e-96 MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQV SADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWL EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE DSEE >gi|223713577|gb|ACDM01000021.1| GENE 69 61181 - 61918 754 245 aa, chain - ## HITS:1 COG:ycdX KEGG:ns NR:ns ## COG: ycdX COG1387 # Protein_GI_number: 16128997 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Escherichia coli K12 # 1 245 1 245 245 479 100.0 1e-135 MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWP RVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIAT IASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAV RDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSPRRLLNFLESRGMAPIA EFADL >gi|223713577|gb|ACDM01000021.1| GENE 70 61973 - 62911 571 312 aa, chain - ## HITS:1 COG:ycdW KEGG:ns NR:ns ## COG: ycdW COG0111 # Protein_GI_number: 16128996 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1 312 14 325 325 640 100.0 0 MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALVWHPPVEMLAGRDLKAV FALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYRIQ QNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAG REELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAAL DSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKGE RVCGQVDRARGY Prediction of potential genes in microbial genomes Time: Mon May 16 18:49:38 2011 Seq name: gi|223713576|gb|ACDM01000022.1| Escherichia sp. 4_1_40B cont1.22, whole genome shotgun sequence Length of sequence - 1458 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 132 - 1118 359 ## JW1015 predicted inner membrane protein 2 1 Op 2 . - CDS 1115 - 1438 252 ## ECH74115_1296 malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39) Predicted protein(s) >gi|223713576|gb|ACDM01000022.1| GENE 1 132 - 1118 359 328 aa, chain - ## HITS:1 COG:no KEGG:JW1015 NR:ns ## KEGG: JW1015 # Name: ycdU # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 328 1 328 328 546 100.0 1e-154 MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSL YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT ISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLF FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY YFFYCRFLWHNDFMMACDMYFRWGHFNK >gi|223713576|gb|ACDM01000022.1| GENE 2 1115 - 1438 252 107 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_1296 NR:ns ## KEGG: ECH74115_1296 # Name: fabD # Def: malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39) # Organism: E.coli_O157_EC4115 # Pathway: Fatty acid biosynthesis [PATH:ecf00061]; Metabolic pathways [PATH:ecf01100] # 1 107 208 314 314 220 98.0 1e-56 MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTF LNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK Prediction of potential genes in microbial genomes Time: Mon May 16 18:50:40 2011 Seq name: gi|223713575|gb|ACDM01000023.1| Escherichia sp. 4_1_40B cont1.23, whole genome shotgun sequence Length of sequence - 175284 bp Number of predicted genes - 157, with homology - 154 Number of transcription units - 85, operones - 30 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 8 - 424 220 ## COG2199 FOG: GGDEF domain - Prom 488 - 547 6.1 + Prom 1857 - 1916 2.9 2 2 Op 1 . + CDS 1953 - 4376 1385 ## B21_01033 hypothetical protein 3 2 Op 2 6/0.125 + CDS 4385 - 6403 1117 ## COG0726 Predicted xylanase/chitin deacetylase + Term 6437 - 6474 3.2 + Prom 6415 - 6474 3.3 4 3 Tu 1 . + CDS 6516 - 7721 839 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis + Term 7753 - 7787 1.2 + Prom 7755 - 7814 3.6 5 4 Tu 1 . + CDS 7834 - 8136 152 ## ECB_01023 predicted inner membrane protein + Term 8201 - 8248 1.5 - Term 8135 - 8171 6.3 6 5 Tu 1 . - CDS 8186 - 9250 705 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - Prom 9350 - 9409 6.1 7 6 Op 1 9/0.000 - CDS 9595 - 10866 1130 ## COG2837 Predicted iron-dependent peroxidase 8 6 Op 2 7/0.094 - CDS 10872 - 11999 1599 ## COG2822 Predicted periplasmic lipoprotein involved in iron transport 9 6 Op 3 1/0.938 - CDS 12057 - 12887 922 ## COG0672 High-affinity Fe2+/Pb2+ permease - Prom 12983 - 13042 4.5 10 7 Tu 1 . - CDS 13430 - 14938 1723 ## COG0591 Na+/proline symporter - Prom 15032 - 15091 2.9 11 8 Tu 1 . - CDS 15097 - 15306 84 ## EcSMS35_2110 hypothetical protein - Prom 15462 - 15521 2.3 + Prom 15188 - 15247 7.9 12 9 Tu 1 . + CDS 15361 - 19323 4589 ## COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase + Term 19331 - 19371 6.2 - Term 19316 - 19359 2.0 13 10 Tu 1 . - CDS 19363 - 20001 681 ## COG1309 Transcriptional regulator - Prom 20145 - 20204 5.1 + Prom 20089 - 20148 3.6 14 11 Op 1 4/0.469 + CDS 20289 - 21380 1012 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 15 11 Op 2 2/0.812 + CDS 21380 - 22072 658 ## COG1335 Amidases related to nicotinamidase 16 11 Op 3 5/0.312 + CDS 22084 - 22470 414 ## COG0251 Putative translation initiation inhibitor, yjgF family 17 11 Op 4 4/0.469 + CDS 22478 - 23278 709 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 18 11 Op 5 5/0.312 + CDS 23288 - 23878 483 ## COG0778 Nitroreductase 19 11 Op 6 1/0.938 + CDS 23889 - 24383 329 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 20 11 Op 7 . + CDS 24404 - 25732 723 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 25756 - 25795 -0.9 - Term 25904 - 25933 1.9 21 12 Tu 1 . - CDS 25989 - 26162 91 ## COG3729 General stress protein - Prom 26327 - 26386 4.7 + Prom 26306 - 26365 3.7 22 13 Op 1 . + CDS 26535 - 27131 679 ## COG0655 Multimeric flavodoxin WrbA 23 13 Op 2 . + CDS 27152 - 27379 363 ## LF82_2690 uncharacterized protein YccJ + Term 27385 - 27423 8.3 24 14 Tu 1 . - CDS 27417 - 28658 1559 ## JW0987 glucose-1-phosphatase/inositol phosphatase - Prom 28851 - 28910 5.5 - Term 28765 - 28807 1.8 25 15 Tu 1 . - CDS 28951 - 30207 376 ## EcolC_2594 hypothetical protein - Prom 30244 - 30303 4.8 26 16 Op 1 . + CDS 30468 - 31388 1069 ## COG2214 DnaJ-class molecular chaperone 27 16 Op 2 . + CDS 31388 - 31693 344 ## ECB_01002 modulator of CbpA co-chaperone - Term 31756 - 31816 4.4 28 17 Op 1 5/0.312 - CDS 31845 - 32444 611 ## COG3381 Uncharacterized component of anaerobic dehydrogenases 29 17 Op 2 7/0.094 - CDS 32441 - 34987 2584 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 30 17 Op 3 . - CDS 34987 - 36159 1119 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit - Prom 36222 - 36281 4.5 + Prom 36124 - 36183 3.3 31 18 Tu 1 . + CDS 36289 - 36981 801 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 32 19 Tu 1 . - CDS 36954 - 37982 711 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 38061 - 38120 2.1 + Prom 37961 - 38020 3.3 33 20 Op 1 1/0.938 + CDS 38095 - 40809 2532 ## COG0642 Signal transduction histidine kinase 34 20 Op 2 . + CDS 40881 - 41954 648 ## COG0348 Polyferredoxin + Term 41984 - 42027 -0.5 - Term 41955 - 41996 5.6 35 21 Tu 1 . - CDS 42003 - 42176 271 ## ECB_00994 predicted regulator of phosphatidylethanolamine synthesis - Prom 42298 - 42357 4.2 - Term 42335 - 42365 1.0 36 22 Tu 1 . - CDS 42570 - 42782 290 ## COG1278 Cold shock proteins - Prom 42971 - 43030 6.0 + Prom 42952 - 43011 6.8 37 23 Tu 1 . + CDS 43068 - 43280 206 ## COG1278 Cold shock proteins + Term 43512 - 43556 -0.2 + Prom 43464 - 43523 5.9 38 24 Tu 1 . + CDS 43723 - 44028 176 ## + Term 44066 - 44102 4.1 + Prom 44099 - 44158 7.8 39 25 Op 1 . + CDS 44201 - 44779 396 ## B21_00996 hypothetical protein 40 25 Op 2 . + CDS 44776 - 45522 500 ## JW0968 conserved hypothetical protein 41 25 Op 3 . + CDS 45522 - 47618 1869 ## JW0967 conserved hypothetical protein 42 25 Op 4 6/0.125 + CDS 47664 - 48803 880 ## COG1596 Periplasmic protein involved in polysaccharide export 43 25 Op 5 3/0.719 + CDS 48791 - 49237 497 ## COG0394 Protein-tyrosine-phosphatase 44 25 Op 6 . + CDS 49257 - 51437 2133 ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis + Term 51517 - 51552 6.0 45 26 Op 1 . - CDS 51552 - 52850 747 ## EcolC_2616 phosphoanhydride phosphorylase 46 26 Op 2 . - CDS 52930 - 53022 69 ## 47 26 Op 3 31/0.000 - CDS 53035 - 54171 1167 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 48 26 Op 4 . - CDS 54183 - 55727 1657 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 55760 - 55819 2.2 49 27 Op 1 . - CDS 55861 - 56718 689 ## B21_00987 hypothetical protein 50 27 Op 2 . - CDS 56715 - 57113 503 ## LF82_1053 hydrogenase-1 operon protein HyaE 51 27 Op 3 7/0.094 - CDS 57110 - 57697 735 ## COG0680 Ni,Fe-hydrogenase maturation factor 52 27 Op 4 8/0.031 - CDS 57694 - 58401 769 ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit 53 27 Op 5 11/0.000 - CDS 58420 - 60213 1946 ## COG0374 Ni,Fe-hydrogenase I large subunit 54 27 Op 6 . - CDS 60210 - 61328 819 ## COG1740 Ni,Fe-hydrogenase I small subunit - Prom 61484 - 61543 2.7 + TRNA 61755 - 61842 76.9 # Ser TGA 0 0 + Prom 61767 - 61826 80.4 55 28 Op 1 2/0.812 + CDS 62049 - 62708 880 ## COG0670 Integral membrane protein, interacts with FtsH + Term 62728 - 62767 3.1 + Prom 62716 - 62775 4.8 56 28 Op 2 . + CDS 62799 - 63128 604 ## COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit - Term 63021 - 63064 1.6 57 29 Tu 1 . - CDS 63125 - 63403 363 ## COG1254 Acylphosphatases - Prom 63487 - 63546 2.4 + Prom 63369 - 63428 2.0 58 30 Op 1 3/0.719 + CDS 63498 - 64688 580 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative 59 30 Op 2 . + CDS 64746 - 65063 428 ## COG3785 Uncharacterized conserved protein + Term 65076 - 65117 10.2 - Term 65064 - 65103 9.0 60 31 Tu 1 . - CDS 65108 - 65521 613 ## COG1832 Predicted CoA-binding protein - Prom 65641 - 65700 3.7 61 32 Op 1 . + CDS 65496 - 65654 70 ## EcSMS35_2154 hypothetical protein 62 32 Op 2 3/0.719 + CDS 65694 - 66356 618 ## COG3110 Uncharacterized protein conserved in bacteria + Term 66366 - 66392 -1.0 63 32 Op 3 . + CDS 66443 - 66910 390 ## COG1803 Methylglyoxal synthase + Term 66918 - 66949 4.1 - Term 66819 - 66857 1.2 64 33 Tu 1 . - CDS 66942 - 69014 1683 ## COG0210 Superfamily I DNA and RNA helicases - Prom 69063 - 69122 4.7 + Prom 69027 - 69086 3.6 65 34 Op 1 5/0.312 + CDS 69119 - 69565 486 ## COG3304 Predicted membrane protein 66 34 Op 2 . + CDS 69575 - 71737 1947 ## COG1289 Predicted membrane protein + Term 71753 - 71801 3.9 67 35 Tu 1 . - CDS 71700 - 72329 537 ## COG3070 Regulator of competence-specific genes - Prom 72361 - 72420 4.5 + Prom 72296 - 72355 5.7 68 36 Tu 1 . + CDS 72548 - 73057 262 ## COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation + Term 73128 - 73171 3.1 + Prom 73202 - 73261 12.2 69 37 Tu 1 . + CDS 73414 - 74454 1149 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins + Term 74465 - 74513 11.3 - Term 74463 - 74490 1.5 70 38 Tu 1 . - CDS 74530 - 74982 488 ## COG3120 Uncharacterized protein conserved in bacteria - Prom 75008 - 75067 4.0 + Prom 75081 - 75140 3.7 71 39 Op 1 8/0.031 + CDS 75168 - 76928 1463 ## COG1067 Predicted ATP-dependent protease 72 39 Op 2 . + CDS 76997 - 77515 754 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 77543 - 77578 4.5 - Term 77530 - 77567 9.1 73 40 Tu 1 . - CDS 77585 - 77752 92 ## COG3130 Ribosome modulation factor - Prom 77829 - 77888 3.3 - Term 77945 - 77985 4.1 74 41 Op 1 8/0.031 - CDS 78008 - 78571 680 ## COG3009 Uncharacterized protein conserved in bacteria 75 41 Op 2 11/0.000 - CDS 78568 - 80208 1516 ## COG3008 Paraquat-inducible protein B 76 41 Op 3 5/0.312 - CDS 80213 - 81466 779 ## COG2995 Uncharacterized paraquat-inducible protein A - Prom 81530 - 81589 1.6 77 42 Op 1 6/0.125 - CDS 81596 - 83503 2438 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 78 42 Op 2 . - CDS 83515 - 85623 178 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative - Prom 85796 - 85855 5.8 + Prom 85742 - 85801 3.4 79 43 Tu 1 . + CDS 85909 - 86976 659 ## COG3217 Uncharacterized Fe-S protein - Term 86668 - 86729 0.5 80 44 Tu 1 . - CDS 86973 - 87515 471 ## SSON_0950 hypothetical protein - Prom 87615 - 87674 6.7 - Term 87612 - 87667 12.9 81 45 Tu 1 . - CDS 87689 - 88699 962 ## COG0167 Dihydroorotate dehydrogenase - Prom 88731 - 88790 4.0 82 46 Tu 1 . + CDS 88643 - 88852 157 ## gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729 83 47 Tu 1 . - CDS 88810 - 89202 167 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 89348 - 89407 1.6 - Term 89340 - 89366 -0.6 84 48 Op 1 4/0.469 - CDS 89513 - 90028 250 ## COG3539 P pilus assembly protein, pilin FimA 85 48 Op 2 4/0.469 - CDS 90036 - 90578 291 ## COG3539 P pilus assembly protein, pilin FimA 86 48 Op 3 6/0.125 - CDS 90590 - 91633 465 ## COG3539 P pilus assembly protein, pilin FimA 87 48 Op 4 10/0.000 - CDS 91651 - 94101 1692 ## COG3188 P pilus assembly protein, porin PapC - Prom 94205 - 94264 2.3 88 48 Op 5 7/0.094 - CDS 94273 - 94974 246 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 94994 - 95053 4.0 - Term 94992 - 95025 6.1 89 49 Tu 1 . - CDS 95057 - 95596 340 ## COG3539 P pilus assembly protein, pilin FimA + Prom 95788 - 95847 6.5 90 50 Op 1 4/0.469 + CDS 95952 - 96527 587 ## COG0431 Predicted flavoprotein 91 50 Op 2 5/0.312 + CDS 96520 - 97479 1031 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 92 50 Op 3 8/0.031 + CDS 97476 - 98621 1228 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 93 50 Op 4 24/0.000 + CDS 98632 - 99423 750 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 94 50 Op 5 . + CDS 99420 - 100187 218 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 + Term 100193 - 100236 12.2 - Term 100177 - 100225 5.7 95 51 Tu 1 . - CDS 100230 - 102842 3020 ## COG0308 Aminopeptidase N - Prom 102949 - 103008 4.3 + Prom 102806 - 102865 3.5 96 52 Tu 1 . + CDS 103060 - 104310 1192 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 104319 - 104348 1.2 97 53 Tu 1 . - CDS 104316 - 104585 85 ## + Prom 104361 - 104420 6.4 98 54 Tu 1 . + CDS 104479 - 105879 1695 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 105894 - 105925 4.1 + Prom 106268 - 106327 7.8 99 55 Tu 1 . + CDS 106481 - 107569 1370 ## COG3203 Outer membrane protein (porin) + Term 107594 - 107634 4.2 + Prom 107660 - 107719 5.0 100 56 Tu 1 . + CDS 107754 - 108944 1492 ## COG1448 Aspartate/tyrosine/aromatic aminotransferase + Term 109134 - 109165 1.1 - Term 108992 - 109029 2.2 101 57 Op 1 7/0.094 - CDS 109166 - 109813 569 ## COG0491 Zn-dependent hydrolases, including glyoxylases 102 57 Op 2 9/0.000 - CDS 109840 - 110388 424 ## COG3108 Uncharacterized protein conserved in bacteria - Prom 110441 - 110500 2.4 - Term 110434 - 110480 5.5 103 57 Op 3 4/0.469 - CDS 110569 - 112416 1329 ## COG2989 Uncharacterized protein conserved in bacteria - Prom 112532 - 112591 6.5 - Term 112640 - 112670 3.0 104 58 Op 1 8/0.031 - CDS 112677 - 117137 6044 ## COG3096 Uncharacterized protein involved in chromosome partitioning 105 58 Op 2 7/0.094 - CDS 117137 - 117841 805 ## COG3095 Uncharacterized protein involved in chromosome partitioning 106 58 Op 3 6/0.125 - CDS 117822 - 119144 1608 ## COG3006 Uncharacterized protein involved in chromosome partitioning 107 58 Op 4 . - CDS 119141 - 119926 700 ## COG0500 SAM-dependent methyltransferases - Prom 120059 - 120118 5.2 108 59 Tu 1 . + CDS 120062 - 120841 656 ## COG1434 Uncharacterized conserved protein + Term 121063 - 121100 -0.9 - Term 120555 - 120611 -0.8 109 60 Tu 1 . - CDS 120818 - 121711 716 ## JW0902 conserved hypothetical protein - Prom 121748 - 121807 4.8 - Term 121792 - 121833 3.4 110 61 Op 1 11/0.000 - CDS 121865 - 122611 788 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase 111 61 Op 2 4/0.469 - CDS 122608 - 122790 184 ## COG2835 Uncharacterized conserved protein 112 61 Op 3 4/0.469 - CDS 122842 - 124074 742 ## COG3214 Uncharacterized protein conserved in bacteria 113 61 Op 4 9/0.000 - CDS 124111 - 125097 658 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase 114 61 Op 5 5/0.312 - CDS 125094 - 126842 242 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 115 61 Op 6 2/0.812 - CDS 126879 - 129143 673 ## COG0658 Predicted membrane metal-binding protein - Prom 129224 - 129283 3.6 - Term 129284 - 129329 9.2 116 62 Tu 1 . - CDS 129351 - 129635 353 ## COG0776 Bacterial nucleoid DNA-binding protein - Term 129680 - 129709 3.5 117 63 Op 1 . - CDS 129755 - 129853 150 ## PROTEIN SUPPORTED gi|238903721|ref|ZP_04649193.1| ribosomal protein S1 118 63 Op 2 21/0.000 - CDS 129795 - 131468 2807 ## PROTEIN SUPPORTED gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 - Term 131522 - 131558 1.3 119 63 Op 3 3/0.719 - CDS 131579 - 132262 267 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 - Prom 132300 - 132359 5.0 - Term 132287 - 132320 2.3 120 64 Tu 1 . - CDS 132435 - 133199 869 ## COG0501 Zn-dependent protease with chaperone function - Prom 133306 - 133365 3.2 - Term 133293 - 133324 2.0 121 65 Op 1 6/0.125 - CDS 133368 - 134651 1359 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase - Term 134669 - 134702 4.1 122 65 Op 2 4/0.469 - CDS 134722 - 135810 1066 ## COG1932 Phosphoserine aminotransferase - Prom 135867 - 135926 3.3 123 66 Tu 1 . - CDS 136009 - 136701 675 ## COG2323 Predicted membrane protein - Prom 136787 - 136846 1.9 + Prom 136658 - 136717 2.9 124 67 Tu 1 . + CDS 136831 - 138591 1946 ## COG1944 Uncharacterized conserved protein + Term 138601 - 138629 0.7 125 68 Op 1 7/0.094 + CDS 138997 - 139854 673 ## COG2116 Formate/nitrite family of transporters 126 68 Op 2 11/0.000 + CDS 139909 - 142191 2558 ## COG1882 Pyruvate-formate lyase + Term 142234 - 142265 3.2 + Prom 142241 - 142300 2.9 127 68 Op 3 . + CDS 142383 - 143123 698 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 143131 - 143175 7.3 - Term 143025 - 143059 1.1 128 69 Tu 1 . - CDS 143205 - 143795 424 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 143820 - 143879 3.2 + Prom 143795 - 143854 2.6 129 70 Tu 1 . + CDS 143895 - 144803 404 ## COG0583 Transcriptional regulator - Term 144659 - 144690 -0.1 130 71 Tu 1 . - CDS 144804 - 146234 1394 ## COG0531 Amino acid transporters - Prom 146318 - 146377 9.1 - Term 146390 - 146433 8.5 131 72 Tu 1 . - CDS 146444 - 147592 1052 ## COG0477 Permeases of the major facilitator superfamily - Prom 147622 - 147681 3.8 + Prom 147641 - 147700 4.3 132 73 Tu 1 . + CDS 147906 - 148532 619 ## COG1335 Amidases related to nicotinamidase + Term 148540 - 148569 1.1 - Term 148527 - 148557 2.1 133 74 Op 1 9/0.000 - CDS 148567 - 149430 888 ## COG3302 DMSO reductase anchor subunit 134 74 Op 2 16/0.000 - CDS 149432 - 150049 647 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 135 74 Op 3 2/0.812 - CDS 150060 - 152504 2581 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 152553 - 152612 4.6 - Term 152692 - 152717 -0.5 136 75 Op 1 8/0.031 - CDS 152743 - 154035 1501 ## COG0172 Seryl-tRNA synthetase - Term 154094 - 154125 -1.0 137 75 Op 2 8/0.031 - CDS 154126 - 155469 1085 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 138 75 Op 3 10/0.000 - CDS 155480 - 156091 669 ## COG2834 Outer membrane lipoprotein-sorting protein 139 75 Op 4 7/0.094 - CDS 156250 - 160239 3874 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 160291 - 160350 2.6 - Term 160274 - 160317 9.2 140 76 Tu 1 . - CDS 160374 - 160868 584 ## COG1522 Transcriptional regulators + Prom 161325 - 161384 5.8 141 77 Tu 1 . + CDS 161413 - 162378 733 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 162405 - 162449 8.0 + Prom 162406 - 162465 6.1 142 78 Op 1 14/0.000 + CDS 162501 - 164267 170 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 143 78 Op 2 5/0.312 + CDS 164268 - 165989 1630 ## COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components 144 78 Op 3 5/0.312 + CDS 166031 - 166735 400 ## COG2360 Leu/Phe-tRNA-protein transferase + Term 166924 - 166960 -1.0 + Prom 166925 - 166984 3.7 145 79 Tu 1 . + CDS 167020 - 167238 257 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 + Term 167275 - 167314 5.5 + TRNA 167492 - 167579 68.6 # Ser GGA 0 0 - Term 167478 - 167547 31.4 146 80 Op 1 . - CDS 167730 - 168575 426 ## ECUMN_3414 hypothetical protein - Term 168591 - 168629 5.9 147 80 Op 2 . - CDS 168657 - 168854 199 ## EC55989_4897 hypothetical protein 148 80 Op 3 . - CDS 168871 - 169122 181 ## EcSMS35_2241 hypothetical protein 149 80 Op 4 . - CDS 169141 - 169362 317 ## EcSMS35_2245 hypothetical protein 150 80 Op 5 . - CDS 169425 - 169901 427 ## COG2003 DNA repair proteins 151 80 Op 6 . - CDS 169917 - 170390 518 ## UTI89_C2275 hypothetical protein - Prom 170574 - 170633 1.9 152 81 Tu 1 . - CDS 170732 - 171550 648 ## EcE24377A_4894 hypothetical protein - Term 171759 - 171800 -0.7 153 82 Tu 1 . - CDS 171988 - 172470 340 ## ECO103_3759 hypothetical protein 154 83 Tu 1 . - CDS 172913 - 173455 388 ## SDY_1017 hypothetical protein - Prom 173483 - 173542 5.2 - Term 173527 - 173585 10.2 155 84 Op 1 . - CDS 173590 - 174063 184 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily 156 84 Op 2 2/0.812 - CDS 174017 - 174538 411 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 174754 - 174813 3.1 - Term 174756 - 174792 3.4 157 85 Tu 1 . - CDS 174910 - 175284 244 ## COG3596 Predicted GTPase Predicted protein(s) >gi|223713575|gb|ACDM01000023.1| GENE 1 8 - 424 220 138 aa, chain - ## HITS:1 COG:ycdT_2 KEGG:ns NR:ns ## COG: ycdT_2 COG2199 # Protein_GI_number: 16128989 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 1 138 65 202 202 271 100.0 2e-73 MIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTER AKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKE TGRNKVVVRDVVNFCESP >gi|223713575|gb|ACDM01000023.1| GENE 2 1953 - 4376 1385 807 aa, chain + ## HITS:1 COG:no KEGG:B21_01033 NR:ns ## KEGG: B21_01033 # Name: ycdS # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 807 1 807 807 1563 100.0 0 MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIEARKGNTQPALSWFALK SALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYAAVAVAYRNLQQWQNSLTL WQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGR HQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSF MPTRSESERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISH YQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFY SHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQA EMTARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTAL TLQEWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDV DLTTIVYSPPLKDNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVF NHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRK YGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTF DIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGA TLRWEKRPYDGDREHNLYVEFDMTFRF >gi|223713575|gb|ACDM01000023.1| GENE 3 4385 - 6403 1117 672 aa, chain + ## HITS:1 COG:ycdR KEGG:ns NR:ns ## COG: ycdR COG0726 # Protein_GI_number: 16128987 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1 672 1 672 672 1344 100.0 0 MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF YTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVE LASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK VEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE FAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPD GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT GEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPA ITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIF ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQA KDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIR PEFSTAWYPKND >gi|223713575|gb|ACDM01000023.1| GENE 4 6516 - 7721 839 401 aa, chain + ## HITS:1 COG:ycdQ KEGG:ns NR:ns ## COG: ycdQ COG1215 # Protein_GI_number: 16128986 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 401 41 441 441 806 100.0 0 MSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQ RYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLV CIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRT QRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWI LMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGF IIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIW FPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG >gi|223713575|gb|ACDM01000023.1| GENE 5 7834 - 8136 152 100 aa, chain + ## HITS:1 COG:no KEGG:ECB_01023 NR:ns ## KEGG: ECB_01023 # Name: pgaD # Def: predicted inner membrane protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 100 38 137 137 171 100.0 7e-42 MDLLTGYYWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAE SLAIPDELYQQLQKSHRMSVHFTSQGQIKMVVSEKALVRA >gi|223713575|gb|ACDM01000023.1| GENE 6 8186 - 9250 705 354 aa, chain - ## HITS:1 COG:ECs1266 KEGG:ns NR:ns ## COG: ECs1266 COG1702 # Protein_GI_number: 15830520 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Escherichia coli O157:H7 # 1 354 1 354 354 716 100.0 0 MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDAVNGARSRFSAFYPKAN YGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVIKARREAKRVLRRDSRSHKQR EEESVTSLVQMGGVEAIGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKT WISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIV NGDITQCDLPRGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS >gi|223713575|gb|ACDM01000023.1| GENE 7 9595 - 10866 1130 423 aa, chain - ## HITS:1 COG:ycdB KEGG:ns NR:ns ## COG: ycdB COG2837 # Protein_GI_number: 16128983 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Escherichia coli K12 # 1 423 1 423 423 866 100.0 0 MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGTLSPDARNEKQPFYGEH QAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS GILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT GAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSG QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYFGSAL LRV >gi|223713575|gb|ACDM01000023.1| GENE 8 10872 - 11999 1599 375 aa, chain - ## HITS:1 COG:ycdO KEGG:ns NR:ns ## COG: ycdO COG2822 # Protein_GI_number: 16128982 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted periplasmic lipoprotein involved in iron transport # Organism: Escherichia coli K12 # 1 375 1 375 375 706 100.0 0 MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNH SQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEAT ADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHY ERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLY TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQK IVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITA LAEDLAQLRGVLGLD >gi|223713575|gb|ACDM01000023.1| GENE 9 12057 - 12887 922 276 aa, chain - ## HITS:1 COG:ECs1263 KEGG:ns NR:ns ## COG: ECs1263 COG0672 # Protein_GI_number: 15830517 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Escherichia coli O157:H7 # 1 276 1 276 276 455 100.0 1e-128 MFVPFLIMLREGLEAALIVSLIASYLKRTQRGRWIGVMWIGVLLAAALCLGLGIFINETT GEFPQKEQELFEGIVAVIAVVILTWMVFWMRKVSRNVKVQLEQAVDSALQRGNHHGWALV MMVFFAVAREGLESVFFLLAAFQQDVGIWPPLGAMLGLATAVVLGFLLYWGGIRLNLGAF FKWTSLFILFVAAGLAAGAIRAFHEAGLWNHFQEIAFDMSAVLSTHSLFGTLMEGIFGYQ EAPSVSEVAVWFIYLIPALVAFALPPRAGATASRSA >gi|223713575|gb|ACDM01000023.1| GENE 10 13430 - 14938 1723 502 aa, chain - ## HITS:1 COG:putP KEGG:ns NR:ns ## COG: putP COG0591 # Protein_GI_number: 16128981 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Escherichia coli K12 # 1 502 1 502 502 891 100.0 0 MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWL LMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFED KSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGF LAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIIS LMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNDHP ALAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKA FLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSV MWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAM QKRFAEADAHYHSAPPSRLQES >gi|223713575|gb|ACDM01000023.1| GENE 11 15097 - 15306 84 69 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_2110 NR:ns ## KEGG: EcSMS35_2110 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 69 1 69 69 101 100.0 1e-20 MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECN LMKNSVAEH >gi|223713575|gb|ACDM01000023.1| GENE 12 15361 - 19323 4589 1320 aa, chain + ## HITS:1 COG:putA_2 KEGG:ns NR:ns ## COG: putA_2 COG4230 # Protein_GI_number: 16128980 # Func_class: C Energy production and conversion # Function: Delta 1-pyrroline-5-carboxylate dehydrogenase # Organism: Escherichia coli K12 # 526 1320 1 795 795 1538 99.0 0 MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGA ANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPV AEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKAT RDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSG EPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY MVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLA RQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDL ATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLI YPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIY APVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGL PHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEM SPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQ MQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNF PLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGA QLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQ VVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRIGNPGRLTTDIGPVI DSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVF GPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVG AVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALT QPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDE QDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHG DSDQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG >gi|223713575|gb|ACDM01000023.1| GENE 13 19363 - 20001 681 212 aa, chain - ## HITS:1 COG:ycdC KEGG:ns NR:ns ## COG: ycdC COG1309 # Protein_GI_number: 16128979 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 212 1 212 212 412 100.0 1e-115 MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP SKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEML AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQV EAVTGATLRDEVFFNQTVENVQRIIIEGIRPR >gi|223713575|gb|ACDM01000023.1| GENE 14 20289 - 21380 1012 363 aa, chain + ## HITS:1 COG:ycdM KEGG:ns NR:ns ## COG: ycdM COG2141 # Protein_GI_number: 16128978 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 363 20 382 382 745 100.0 0 MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEF WDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGW QKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSV PMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVL FMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNIN MGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQ EVA >gi|223713575|gb|ACDM01000023.1| GENE 15 21380 - 22072 658 230 aa, chain + ## HITS:1 COG:ycdL KEGG:ns NR:ns ## COG: ycdL COG1335 # Protein_GI_number: 16128977 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1 230 15 244 244 469 100.0 1e-132 MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAA RAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVD ELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYF GVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA >gi|223713575|gb|ACDM01000023.1| GENE 16 22084 - 22470 414 128 aa, chain + ## HITS:1 COG:ycdK KEGG:ns NR:ns ## COG: ycdK COG0251 # Protein_GI_number: 16128976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1 128 1 128 128 250 100.0 4e-67 MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIR KVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEI ATIAHIAK >gi|223713575|gb|ACDM01000023.1| GENE 17 22478 - 23278 709 266 aa, chain + ## HITS:1 COG:ycdJ KEGG:ns NR:ns ## COG: ycdJ COG0596 # Protein_GI_number: 16128975 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 266 1 266 266 503 100.0 1e-142 MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAED YSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAH TRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLR RLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACN VTDPETFNALLLNGLASLLHHREAAL >gi|223713575|gb|ACDM01000023.1| GENE 18 23288 - 23878 483 196 aa, chain + ## HITS:1 COG:ycdI KEGG:ns NR:ns ## COG: ycdI COG0778 # Protein_GI_number: 16128974 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1 196 1 196 196 387 100.0 1e-108 MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTA EGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEET AFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKL YARLPRLSFEEACGLL >gi|223713575|gb|ACDM01000023.1| GENE 19 23889 - 24383 329 164 aa, chain + ## HITS:1 COG:ycdH KEGG:ns NR:ns ## COG: ycdH COG1853 # Protein_GI_number: 16128973 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 13 164 1 152 152 308 100.0 2e-84 MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVW PAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCR ISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC >gi|223713575|gb|ACDM01000023.1| GENE 20 24404 - 25732 723 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 24 428 8 421 447 283 37 5e-75 MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNL SILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACG LVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTV LCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFS TPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVG GSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVV FGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAIL LNALLSRKLVDVPPPEVVHQEP >gi|223713575|gb|ACDM01000023.1| GENE 21 25989 - 26162 91 57 aa, chain - ## HITS:1 COG:STM1121 KEGG:ns NR:ns ## COG: STM1121 COG3729 # Protein_GI_number: 16764478 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1 55 1 55 55 59 92.0 1e-09 MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN >gi|223713575|gb|ACDM01000023.1| GENE 22 26535 - 27131 679 198 aa, chain + ## HITS:1 COG:wrbA KEGG:ns NR:ns ## COG: wrbA COG0655 # Protein_GI_number: 16128970 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Escherichia coli K12 # 1 198 1 198 198 349 100.0 2e-96 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPV ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQ EQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELS IARYQGEYVAGLAVKLNG >gi|223713575|gb|ACDM01000023.1| GENE 23 27152 - 27379 363 75 aa, chain + ## HITS:1 COG:no KEGG:LF82_2690 NR:ns ## KEGG: LF82_2690 # Name: yccJ # Def: uncharacterized protein YccJ # Organism: E.coli_LF82 # Pathway: not_defined # 1 75 1 75 75 125 100.0 6e-28 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDK DSLFWGEQTIERKNV >gi|223713575|gb|ACDM01000023.1| GENE 24 27417 - 28658 1559 413 aa, chain - ## HITS:1 COG:no KEGG:JW0987 NR:ns ## KEGG: JW0987 # Name: agp # Def: glucose-1-phosphatase/inositol phosphatase # Organism: E.coli_J # Pathway: Glycolysis / Gluconeogenesis [PATH:ecj00010] # 1 413 1 413 413 834 100.0 0 MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNK WPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVAT AQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDS YQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYY EGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRT SAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIE YVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK >gi|223713575|gb|ACDM01000023.1| GENE 25 28951 - 30207 376 418 aa, chain - ## HITS:1 COG:no KEGG:EcolC_2594 NR:ns ## KEGG: EcolC_2594 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 418 1 418 418 806 99.0 0 MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEED TPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVRDIDIVRVS LPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLD SDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYN EFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFID SCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLAVLSDSICSLFIVNSNVAS ISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI >gi|223713575|gb|ACDM01000023.1| GENE 26 30468 - 31388 1069 306 aa, chain + ## HITS:1 COG:cbpA KEGG:ns NR:ns ## COG: cbpA COG2214 # Protein_GI_number: 16128966 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Escherichia coli K12 # 1 306 1 306 306 612 100.0 1e-175 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ RRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDI EIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQG TPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLT IPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPR KDWGKA >gi|223713575|gb|ACDM01000023.1| GENE 27 31388 - 31693 344 101 aa, chain + ## HITS:1 COG:no KEGG:ECB_01002 NR:ns ## KEGG: ECB_01002 # Name: yccD # Def: modulator of CbpA co-chaperone # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 101 1 101 101 189 100.0 2e-47 MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLR HELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP >gi|223713575|gb|ACDM01000023.1| GENE 28 31845 - 32444 611 199 aa, chain - ## HITS:1 COG:torD KEGG:ns NR:ns ## COG: torD COG3381 # Protein_GI_number: 16128964 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli K12 # 1 199 1 199 199 375 100.0 1e-104 MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENR IATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFN EPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCRQYDSFGF YAALSQLLLVLVECDHQNR >gi|223713575|gb|ACDM01000023.1| GENE 29 32441 - 34987 2584 848 aa, chain - ## HITS:1 COG:torA KEGG:ns NR:ns ## COG: torA COG0243 # Protein_GI_number: 16128963 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 848 1 848 848 1751 100.0 0 MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWG AIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQ RGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALH GNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANW WCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLA LAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLAR QMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRK GVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMC IFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYG NHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQ GKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIAD MNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGK EPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGE PGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEY VPASQVKS >gi|223713575|gb|ACDM01000023.1| GENE 30 34987 - 36159 1119 390 aa, chain - ## HITS:1 COG:torC KEGG:ns NR:ns ## COG: torC COG3005 # Protein_GI_number: 16128962 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli K12 # 1 390 1 390 390 801 100.0 0 MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEE YKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRA ELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQ LPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDG DWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQ ATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLD KREERTLLKYLQMNASDTAGKAHGDKKEEK >gi|223713575|gb|ACDM01000023.1| GENE 31 36289 - 36981 801 230 aa, chain + ## HITS:1 COG:torR KEGG:ns NR:ns ## COG: torR COG0745 # Protein_GI_number: 16128961 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 230 1 230 230 439 100.0 1e-123 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC >gi|223713575|gb|ACDM01000023.1| GENE 32 36954 - 37982 711 342 aa, chain - ## HITS:1 COG:torT KEGG:ns NR:ns ## COG: torT COG1879 # Protein_GI_number: 16128960 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 342 1 342 342 638 100.0 0 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK >gi|223713575|gb|ACDM01000023.1| GENE 33 38095 - 40809 2532 904 aa, chain + ## HITS:1 COG:torS_1 KEGG:ns NR:ns ## COG: torS_1 COG0642 # Protein_GI_number: 16128959 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 650 1 650 650 1130 100.0 0 MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQR LQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALD RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI EDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL LDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEH RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD MPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLA EIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP KTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAA LVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL GQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQ DSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKD LNAI >gi|223713575|gb|ACDM01000023.1| GENE 34 40881 - 41954 648 357 aa, chain + ## HITS:1 COG:yccM KEGG:ns NR:ns ## COG: yccM COG0348 # Protein_GI_number: 16128958 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Escherichia coli K12 # 1 357 1 357 357 702 100.0 0 MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETA SSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCS WLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYF MLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQK PAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH >gi|223713575|gb|ACDM01000023.1| GENE 35 42003 - 42176 271 57 aa, chain - ## HITS:1 COG:no KEGG:ECB_00994 NR:ns ## KEGG: ECB_00994 # Name: gnsA # Def: predicted regulator of phosphatidylethanolamine synthesis # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 57 1 57 57 75 100.0 4e-13 MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM >gi|223713575|gb|ACDM01000023.1| GENE 36 42570 - 42782 290 70 aa, chain - ## HITS:1 COG:ECs1145 KEGG:ns NR:ns ## COG: ECs1145 COG1278 # Protein_GI_number: 15830399 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 70 1 70 70 133 100.0 9e-32 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR GPAAANVVTL >gi|223713575|gb|ACDM01000023.1| GENE 37 43068 - 43280 206 70 aa, chain + ## HITS:1 COG:ECs1144 KEGG:ns NR:ns ## COG: ECs1144 COG1278 # Protein_GI_number: 15830398 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 70 1 70 70 137 100.0 5e-33 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR GPTAANVYLS >gi|223713575|gb|ACDM01000023.1| GENE 38 43723 - 44028 176 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTGATTTATTTGGVAAGAV GTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR >gi|223713575|gb|ACDM01000023.1| GENE 39 44201 - 44779 396 192 aa, chain + ## HITS:1 COG:no KEGG:B21_00996 NR:ns ## KEGG: B21_00996 # Name: ymcC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 192 23 214 214 375 100.0 1e-103 MVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNA MLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLS STFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGV IPVEMTFLKPAP >gi|223713575|gb|ACDM01000023.1| GENE 40 44776 - 45522 500 248 aa, chain + ## HITS:1 COG:no KEGG:JW0968 NR:ns ## KEGG: JW0968 # Name: ymcB # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 248 1 248 248 472 100.0 1e-132 MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWW PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS VLTQRVPD >gi|223713575|gb|ACDM01000023.1| GENE 41 45522 - 47618 1869 698 aa, chain + ## HITS:1 COG:no KEGG:JW0967 NR:ns ## KEGG: JW0967 # Name: ymcA # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 698 1 698 698 1422 100.0 0 MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDK YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEG LQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRI REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS ELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG QYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN RNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ >gi|223713575|gb|ACDM01000023.1| GENE 42 47664 - 48803 880 379 aa, chain + ## HITS:1 COG:ECs1139 KEGG:ns NR:ns ## COG: ECs1139 COG1596 # Protein_GI_number: 15830393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Escherichia coli O157:H7 # 1 379 1 379 379 743 99.0 0 MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLI DQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWV NADGAIFYPYIGRLKMAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVS KSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFV IRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPT ISGVHDLTETSRWIQTWPN >gi|223713575|gb|ACDM01000023.1| GENE 43 48791 - 49237 497 148 aa, chain + ## HITS:1 COG:ECs1138 KEGG:ns NR:ns ## COG: ECs1138 COG0394 # Protein_GI_number: 15830392 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Escherichia coli O157:H7 # 1 148 5 152 152 276 100.0 1e-74 MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANH GVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDP YRKSQDAFEHVYGMLERASQEWAKRLSR >gi|223713575|gb|ACDM01000023.1| GENE 44 49257 - 51437 2133 726 aa, chain + ## HITS:1 COG:yccC_1 KEGG:ns NR:ns ## COG: yccC_1 COG3206 # Protein_GI_number: 16128947 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Escherichia coli K12 # 1 480 1 480 480 889 99.0 0 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADT LVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPI VGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRL EKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQ LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSERDQAEEKLNVYRQQRDSV DLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNK RVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPV KPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRT RLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGAT PDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKV IQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVV GRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGY SYSEKE >gi|223713575|gb|ACDM01000023.1| GENE 45 51552 - 52850 747 432 aa, chain - ## HITS:1 COG:no KEGG:EcolC_2616 NR:ns ## KEGG: EcolC_2616 # Name: not_defined # Def: phosphoanhydride phosphorylase # Organism: E.coli_ATCC8739 # Pathway: gamma-Hexachlorocyclohexane degradation [PATH:ecl00361]; Inositol phosphate metabolism [PATH:ecl00562]; Riboflavin metabolism [PATH:ecl00740] # 1 432 11 442 442 844 99.0 0 MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWP TWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGE AFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGH RQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLT EIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTA LTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERW RRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQ IVNEARIPACSL >gi|223713575|gb|ACDM01000023.1| GENE 46 52930 - 53022 69 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWYLLWFVGILLMCSLSTLVLVWLDPRLKS >gi|223713575|gb|ACDM01000023.1| GENE 47 53035 - 54171 1167 378 aa, chain - ## HITS:1 COG:appB KEGG:ns NR:ns ## COG: appB COG1294 # Protein_GI_number: 16128945 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Escherichia coli K12 # 1 378 1 378 378 666 100.0 0 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK MWGRMTTETLRRNENELY >gi|223713575|gb|ACDM01000023.1| GENE 48 54183 - 55727 1657 514 aa, chain - ## HITS:1 COG:appC KEGG:ns NR:ns ## COG: appC COG1271 # Protein_GI_number: 16128944 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Escherichia coli K12 # 1 514 1 514 514 964 99.0 0 MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFG INFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQR LNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVS QVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALRSFAIGSVFGTLAIIGTLQLGDS SAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSL DKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRY APDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHR WVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVG LYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG >gi|223713575|gb|ACDM01000023.1| GENE 49 55861 - 56718 689 285 aa, chain - ## HITS:1 COG:no KEGG:B21_00987 NR:ns ## KEGG: B21_00987 # Name: hyaF # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 285 1 285 285 556 100.0 1e-157 MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQL SERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRV RRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRN PDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDT LKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT >gi|223713575|gb|ACDM01000023.1| GENE 50 56715 - 57113 503 132 aa, chain - ## HITS:1 COG:no KEGG:LF82_1053 NR:ns ## KEGG: LF82_1053 # Name: hyaE # Def: hydrogenase-1 operon protein HyaE # Organism: E.coli_LF82 # Pathway: not_defined # 1 132 1 132 132 260 99.0 1e-68 MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGE LLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM RGLVEPQQERAS >gi|223713575|gb|ACDM01000023.1| GENE 51 57110 - 57697 735 195 aa, chain - ## HITS:1 COG:hyaD KEGG:ns NR:ns ## COG: hyaD COG0680 # Protein_GI_number: 16128941 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli K12 # 1 195 1 195 195 360 100.0 1e-99 MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNLLGYVESASH LLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALADIRGHLPAHIALV GLQPAMLDDYGGSLSELAREQLPAAEQAALAQLAAWGIVPQPANESRCLNYDCLSMENYE GVRLRQYRMTQEEQG >gi|223713575|gb|ACDM01000023.1| GENE 52 57694 - 58401 769 235 aa, chain - ## HITS:1 COG:ECs1130 KEGG:ns NR:ns ## COG: ECs1130 COG1969 # Protein_GI_number: 15830384 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Escherichia coli O157:H7 # 1 235 1 235 235 433 100.0 1e-121 MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIR LIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPS ADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDI HSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERS >gi|223713575|gb|ACDM01000023.1| GENE 53 58420 - 60213 1946 597 aa, chain - ## HITS:1 COG:hyaB KEGG:ns NR:ns ## COG: hyaB COG0374 # Protein_GI_number: 16128939 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Escherichia coli K12 # 1 597 1 597 597 1273 99.0 0 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAADKLQYFFDKLMTNLKNG NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR >gi|223713575|gb|ACDM01000023.1| GENE 54 60210 - 61328 819 372 aa, chain - ## HITS:1 COG:hyaA KEGG:ns NR:ns ## COG: hyaA COG1740 # Protein_GI_number: 16128938 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Escherichia coli K12 # 1 372 1 372 372 738 100.0 0 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTE TEHQPGNEDKQA >gi|223713575|gb|ACDM01000023.1| GENE 55 62049 - 62708 880 219 aa, chain + ## HITS:1 COG:yccA KEGG:ns NR:ns ## COG: yccA COG0670 # Protein_GI_number: 16128937 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1 219 1 219 219 330 100.0 8e-91 MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY GLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCC SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFET SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD >gi|223713575|gb|ACDM01000023.1| GENE 56 62799 - 63128 604 109 aa, chain + ## HITS:1 COG:ECs1053 KEGG:ns NR:ns ## COG: ECs1053 COG2920 # Protein_GI_number: 15830307 # Func_class: P Inorganic ion transport and metabolism # Function: Dissimilatory sulfite reductase (desulfoviridin), gamma subunit # Organism: Escherichia coli O157:H7 # 1 109 20 128 128 219 100.0 1e-57 MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHWEVVRFVRDFYLEFNTS PAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI >gi|223713575|gb|ACDM01000023.1| GENE 57 63125 - 63403 363 92 aa, chain - ## HITS:1 COG:ECs1052 KEGG:ns NR:ns ## COG: ECs1052 COG1254 # Protein_GI_number: 15830306 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Escherichia coli O157:H7 # 1 92 1 92 92 184 100.0 4e-47 MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQ WLKSGGPRSARVERVLSEPHHPSGELTDFRIR >gi|223713575|gb|ACDM01000023.1| GENE 58 63498 - 64688 580 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 22 389 21 386 396 228 32 2e-58 MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQ IRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITIDRF GNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVAVRKKEGMELTQGPVTGELPP ALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALM GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDA GRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRVM >gi|223713575|gb|ACDM01000023.1| GENE 59 64746 - 65063 428 105 aa, chain + ## HITS:1 COG:ECs1050 KEGG:ns NR:ns ## COG: ECs1050 COG3785 # Protein_GI_number: 15830304 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 105 18 122 122 200 100.0 6e-52 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDN GLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPRLRN >gi|223713575|gb|ACDM01000023.1| GENE 60 65108 - 65521 613 137 aa, chain - ## HITS:1 COG:yccU KEGG:ns NR:ns ## COG: yccU COG1832 # Protein_GI_number: 16128932 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Escherichia coli K12 # 1 137 28 164 164 269 100.0 1e-72 MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV VMDRCPAIEIPRLGLAK >gi|223713575|gb|ACDM01000023.1| GENE 61 65496 - 65654 70 52 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_2154 NR:ns ## KEGG: EcSMS35_2154 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 52 5 56 56 79 100.0 3e-14 MPAISVSFIISSRLFNKVYDKADMPTMQLIRMNESKSGKYVYMLVSMIKEKF >gi|223713575|gb|ACDM01000023.1| GENE 62 65694 - 66356 618 220 aa, chain + ## HITS:1 COG:ECs1048 KEGG:ns NR:ns ## COG: ECs1048 COG3110 # Protein_GI_number: 15830302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 220 1 220 220 409 100.0 1e-114 MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLV FRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLD GDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSEL DAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS >gi|223713575|gb|ACDM01000023.1| GENE 63 66443 - 66910 390 155 aa, chain + ## HITS:1 COG:ECs1047 KEGG:ns NR:ns ## COG: ECs1047 COG1803 # Protein_GI_number: 15830301 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Escherichia coli O157:H7 # 1 155 1 155 155 313 100.0 9e-86 MYIMELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATG MNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA TNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK >gi|223713575|gb|ACDM01000023.1| GENE 64 66942 - 69014 1683 690 aa, chain - ## HITS:1 COG:helD KEGG:ns NR:ns ## COG: helD COG0210 # Protein_GI_number: 16128929 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 7 690 1 684 684 1342 100.0 0 MWIYRVMELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLLAIHCKRGLVW GELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGVLRQQLDLIATRT GENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQAWLKDIESARLQHN QAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLL ARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQQGSKKVPIVS KLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLAS RLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGL IHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYR FSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGD KKAVTLLDESQLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTI HASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRLMYVALTRAR HRVWALFNKENPSPFVEILKNLDVPVARKP >gi|223713575|gb|ACDM01000023.1| GENE 65 69119 - 69565 486 148 aa, chain + ## HITS:1 COG:yccF KEGG:ns NR:ns ## COG: yccF COG3304 # Protein_GI_number: 16128928 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 134 1 134 148 239 100.0 2e-63 MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVD ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI ALWPVGRRVVSVETAQAAREANARRRFE >gi|223713575|gb|ACDM01000023.1| GENE 66 69575 - 71737 1947 720 aa, chain + ## HITS:1 COG:yccS KEGG:ns NR:ns ## COG: yccS COG1289 # Protein_GI_number: 16128927 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 720 1 720 720 1426 99.0 0 MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLD DRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAF GALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQL ARYLELKSRMFDPDIEDQSHAPLYDLALANGLLMATLNQTKLSLLTRLRGDRGQRGTRRT LHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQP YQHDPHFERAFTHIDAALERMRDNGAPADLLKTLGFLLNNLRAIDAQLATIESEQAQALP HNNDENELADDSPHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGY WILLTSLFVCQPNYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFF AFRNVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFR NLPRMLERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPN VTPQIREAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADE ERVNEALASLKQRMQQLEPRADSKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA >gi|223713575|gb|ACDM01000023.1| GENE 67 71700 - 72329 537 209 aa, chain - ## HITS:1 COG:yccR KEGG:ns NR:ns ## COG: yccR COG3070 # Protein_GI_number: 16128926 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Escherichia coli K12 # 1 209 1 209 209 407 100.0 1e-114 MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYC VKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLK DLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHE AALPVARRQELAEWADSLTPKQEFPAELE >gi|223713575|gb|ACDM01000023.1| GENE 68 72548 - 73057 262 169 aa, chain + ## HITS:1 COG:ECs1042 KEGG:ns NR:ns ## COG: ECs1042 COG5404 # Protein_GI_number: 15830296 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: SOS-response cell division inhibitor, blocks FtsZ ring formation # Organism: Escherichia coli O157:H7 # 1 169 1 169 169 269 100.0 2e-72 MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPMMTQLLLLPLLQQLGQQ SRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVESMVRALRTGNYSVVIGWLA DDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSGLKIHSNLYH >gi|223713575|gb|ACDM01000023.1| GENE 69 73414 - 74454 1149 346 aa, chain + ## HITS:1 COG:ECs1041 KEGG:ns NR:ns ## COG: ECs1041 COG2885 # Protein_GI_number: 15830295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 1 346 1 346 346 658 100.0 0 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA FGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGG MVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDN GMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQ LYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGM GESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA >gi|223713575|gb|ACDM01000023.1| GENE 70 74530 - 74982 488 150 aa, chain - ## HITS:1 COG:ECs1040 KEGG:ns NR:ns ## COG: ECs1040 COG3120 # Protein_GI_number: 15830294 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 150 1 150 150 253 100.0 9e-68 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDK HMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIV QLIEDAENKEKYANKMSSLKQDLQALLGKE >gi|223713575|gb|ACDM01000023.1| GENE 71 75168 - 76928 1463 586 aa, chain + ## HITS:1 COG:ycbZ KEGG:ns NR:ns ## COG: ycbZ COG1067 # Protein_GI_number: 16128922 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent protease # Organism: Escherichia coli K12 # 1 586 1 586 586 1167 100.0 0 MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFML AKAPEESEYLNLIANAARTLQSDAGQLVGGHYEVSGHSIRLRHAVSADDNFATLTQVVAA DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTLLAQPLLWMRLKNIVNRERF DWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD AESVTQWCRWVTFTARHNHLPAPGADAWPILIREAARYTGEQETLPLSPQWILRQCKEVA SLCDGDTFSGEQLNLMLQQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEF PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLL LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN >gi|223713575|gb|ACDM01000023.1| GENE 72 76997 - 77515 754 172 aa, chain + ## HITS:1 COG:ECs1038 KEGG:ns NR:ns ## COG: ECs1038 COG0764 # Protein_GI_number: 15830292 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 # 1 172 1 172 172 344 100.0 4e-95 MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF >gi|223713575|gb|ACDM01000023.1| GENE 73 77585 - 77752 92 55 aa, chain - ## HITS:1 COG:ECs1037 KEGG:ns NR:ns ## COG: ECs1037 COG3130 # Protein_GI_number: 15830291 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome modulation factor # Organism: Escherichia coli O157:H7 # 1 55 1 55 55 80 100.0 5e-16 MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA >gi|223713575|gb|ACDM01000023.1| GENE 74 78008 - 78571 680 187 aa, chain - ## HITS:1 COG:ymbA KEGG:ns NR:ns ## COG: ymbA COG3009 # Protein_GI_number: 16128919 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6 187 1 182 182 338 99.0 3e-93 MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA QEIKRLP >gi|223713575|gb|ACDM01000023.1| GENE 75 78568 - 80208 1516 546 aa, chain - ## HITS:1 COG:pqiB KEGG:ns NR:ns ## COG: pqiB COG3008 # Protein_GI_number: 16128918 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Escherichia coli K12 # 1 546 1 546 546 1082 100.0 0 MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEVTLITANAEGIEGGKT TIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDTVFWVVKPQIGREGISGLG TLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRVILDSKKAGQLSPGDPVLFRG YRVGSVETSTFDTQKRNISYQLFINAPYDRLVTNNVRFWKDSGIAVDLTSAGMRVEMGSL TTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKSIQDSLYTDHIDYLMFFKDSVRGLQ PGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYRIPVLIRIEPERLKMQLGENADVVEHL GELLKRGLRGSLKTGNLVTGALYVDLDFYPNTPAITGIREFNGYQIIPTVSGGLAQIQQR LMEALDKINKLPLNPMIEQATSTLSESQRTMKNLQTTLDSMNKILASQSMQQLPTDMQST LRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEAKDKKDPE PKRAKQ >gi|223713575|gb|ACDM01000023.1| GENE 76 80213 - 81466 779 417 aa, chain - ## HITS:1 COG:pqiA KEGG:ns NR:ns ## COG: pqiA COG2995 # Protein_GI_number: 16128917 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli K12 # 1 417 1 417 417 790 100.0 0 MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAWDAPRQRPTAYALAALF MLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTFFLLFVQLVPAFCLITILL LVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGSIGVGSSFLPWCLF CVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIRQGLRSCSCCTAILPADEPVCPR CSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIMVTDLLGSKMPSTILAGVILLWSEG SYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVF VIAVLSALVRMGGLMSIYPAMGALMFALVVIMTMFSAMTFDPRLSWDRQPESEHEES >gi|223713575|gb|ACDM01000023.1| GENE 77 81596 - 83503 2438 635 aa, chain - ## HITS:1 COG:ECs1033 KEGG:ns NR:ns ## COG: ECs1033 COG0488 # Protein_GI_number: 15830287 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 635 1 635 635 1186 99.0 0 MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNEL AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERRE VMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTT LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA VKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG >gi|223713575|gb|ACDM01000023.1| GENE 78 83515 - 85623 178 702 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 487 667 174 328 396 73 29 7e-12 MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLP LGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAF TRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAA IVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVK AEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPK GPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRAD KQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLKKFEKWARQEGIECYRL YDADLPEYNVAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLK TRERQKGKNQYQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGK DFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA WLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG FRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNCWLITAA >gi|223713575|gb|ACDM01000023.1| GENE 79 85909 - 86976 659 355 aa, chain + ## HITS:1 COG:ycbX_1 KEGG:ns NR:ns ## COG: ycbX_1 COG3217 # Protein_GI_number: 16128914 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1 259 15 273 273 543 100.0 1e-154 MRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGS SAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRH NTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIG DVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGV IRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLEN QGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR >gi|223713575|gb|ACDM01000023.1| GENE 80 86973 - 87515 471 180 aa, chain - ## HITS:1 COG:no KEGG:SSON_0950 NR:ns ## KEGG: SSON_0950 # Name: ycbW # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 180 13 192 192 374 100.0 1e-102 MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFSPAGFCVDDAALYFSF EEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHGEMWVPMPGDAACVWLSDT HEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKIMNDRLKPQVNVDSFSLEQAV >gi|223713575|gb|ACDM01000023.1| GENE 81 87689 - 88699 962 336 aa, chain - ## HITS:1 COG:ECs1029 KEGG:ns NR:ns ## COG: ECs1029 COG0167 # Protein_GI_number: 15830283 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 336 1 336 336 679 100.0 0 MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGL AAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV DNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPG LRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNID GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS VIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI >gi|223713575|gb|ACDM01000023.1| GENE 82 88643 - 88852 157 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|213615837|ref|ZP_03371663.1| ## NR: gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] # 1 44 1 44 45 81 88.0 2e-14 MSALWIELEKGFTNEGVVHELSWIPGVQTGGVLCASSDQKGIDLRQKKRKRFPNLFQGRF CSFFALNPP >gi|223713575|gb|ACDM01000023.1| GENE 83 88810 - 89202 167 130 aa, chain - ## HITS:1 COG:ycbF KEGG:ns NR:ns ## COG: ycbF COG3121 # Protein_GI_number: 16128911 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 130 116 245 245 260 99.0 4e-70 MPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNS QGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGG LSAKKEQNLP >gi|223713575|gb|ACDM01000023.1| GENE 84 89513 - 90028 250 171 aa, chain - ## HITS:1 COG:ycbV KEGG:ns NR:ns ## COG: ycbV COG3539 # Protein_GI_number: 16128910 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 171 17 187 187 345 100.0 2e-95 MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFS HGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDA KILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD >gi|223713575|gb|ACDM01000023.1| GENE 85 90036 - 90578 291 180 aa, chain - ## HITS:1 COG:ycbU KEGG:ns NR:ns ## COG: ycbU COG3539 # Protein_GI_number: 16128909 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 180 1 180 180 334 100.0 6e-92 MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ >gi|223713575|gb|ACDM01000023.1| GENE 86 90590 - 91633 465 347 aa, chain - ## HITS:1 COG:ycbT KEGG:ns NR:ns ## COG: ycbT COG3539 # Protein_GI_number: 16128908 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 347 10 356 356 693 99.0 0 MSLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYIGVNFGVKTLEEEANTAGVVKDKFYQ WNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTA VPFENVGTGGDTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIPPMALARLYE CYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAANFRVVGHKPL GARTAELAIPVRCNTGNAGLVNVNLSLTATTDPSYPQAIKTSRPGVGVVVTDSQNNIISP AGGTLPLSIPDDADSIARMNVYPVSTTGVPPETGRFEATATVRINFD >gi|223713575|gb|ACDM01000023.1| GENE 87 91651 - 94101 1692 816 aa, chain - ## HITS:1 COG:ycbS KEGG:ns NR:ns ## COG: ycbS COG3188 # Protein_GI_number: 16128907 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 816 50 866 866 1575 99.0 0 MVADLSRFEKGRKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGV NTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWD EGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAE WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVR GIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPF SSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRA AMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYS TSGFYTLSDTMYKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFY LSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGISWNYSKSRGQPDADQVFALNFSLPLNL LLPRSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKT ANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIA APGAENTRVANSTGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTK GALVLAEFNAHAGARVLMKTSKQGIPLRFGAIATLDGVQANSGIIDDGSLYMAGLPAKGT ISVRWGEAPDQICHINYELTEQQINSAITRMDAICR >gi|223713575|gb|ACDM01000023.1| GENE 88 94273 - 94974 246 233 aa, chain - ## HITS:1 COG:ycbR KEGG:ns NR:ns ## COG: ycbR COG3121 # Protein_GI_number: 16128906 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 233 1 233 233 447 100.0 1e-126 MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVP YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP STTKRKEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL TDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS >gi|223713575|gb|ACDM01000023.1| GENE 89 95057 - 95596 340 179 aa, chain - ## HITS:1 COG:ycbQ KEGG:ns NR:ns ## COG: ycbQ COG3539 # Protein_GI_number: 16128905 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 179 4 182 182 251 100.0 4e-67 MKKSVLTAFITVVCATSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPDVS ATKLQTNGQVSGVQIDVPIELKDCDTTVTKNATFTFNGTADTTQITAFANQASSDAATNV ALQMYMNDGTTAITPDTETGNILLQDGDQTLTFKVDYIATGKATSGNVNAVTNFHINYY >gi|223713575|gb|ACDM01000023.1| GENE 90 95952 - 96527 587 191 aa, chain + ## HITS:1 COG:ZycbP KEGG:ns NR:ns ## COG: ZycbP COG0431 # Protein_GI_number: 15800798 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Escherichia coli O157:H7 EDL933 # 1 191 1 191 191 353 97.0 8e-98 MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTF TEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYA LKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTRLDTALETFWQALHRRDVQVP DLLSLRGNAHA >gi|223713575|gb|ACDM01000023.1| GENE 91 96520 - 97479 1031 319 aa, chain + ## HITS:1 COG:ssuA KEGG:ns NR:ns ## COG: ssuA COG0715 # Protein_GI_number: 16128903 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Escherichia coli K12 # 1 319 15 333 333 608 100.0 1e-174 MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISW VEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSP IKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAW AIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPK KVDIRQRIWQPTQLEGKQL >gi|223713575|gb|ACDM01000023.1| GENE 92 97476 - 98621 1228 381 aa, chain + ## HITS:1 COG:ycbN KEGG:ns NR:ns ## COG: ycbN COG2141 # Protein_GI_number: 16128902 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 381 1 381 381 757 100.0 0 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWL VAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDG VFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSS DVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGG AGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQ PLNPQGEAVANDFIPRKVAQS >gi|223713575|gb|ACDM01000023.1| GENE 93 98632 - 99423 750 263 aa, chain + ## HITS:1 COG:ssuC KEGG:ns NR:ns ## COG: ssuC COG0600 # Protein_GI_number: 16128901 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1 263 16 278 278 422 100.0 1e-118 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQ HLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWF GIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPS IMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV SAQLLERLWLRWNPAYHLKEATV >gi|223713575|gb|ACDM01000023.1| GENE 94 99420 - 100187 218 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 12 255 9 284 309 88 26 2e-16 MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL ETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGLKGQWRDAARRALAAV GLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ EHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPRPRRLGSVRLAELEAEVLQR VMQRGESETRLRKQG >gi|223713575|gb|ACDM01000023.1| GENE 95 100230 - 102842 3020 870 aa, chain - ## HITS:1 COG:pepN KEGG:ns NR:ns ## COG: pepN COG0308 # Protein_GI_number: 16128899 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Escherichia coli K12 # 1 870 1 870 870 1759 100.0 0 MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLK LVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQC EAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPF PKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEER FGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYF HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPM AHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDD FVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQP LHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPV KLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFR AVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIY NANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAA VAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPN RIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKR QEKMRAALEQLKGLENLSGDLYEKITKALA >gi|223713575|gb|ACDM01000023.1| GENE 96 103060 - 104310 1192 416 aa, chain + ## HITS:1 COG:pncB KEGG:ns NR:ns ## COG: pncB COG1488 # Protein_GI_number: 16128898 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Escherichia coli K12 # 17 416 1 400 400 823 100.0 0 MFIVLNAPVRGRYCAPMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD DLLGIYADAIREQVQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSNDN GKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSALTAGL DMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQAHEWFQ AHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASRYQGLRHDS GDPVEWGEKAIAHYEKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQLSFGIGTRLTC DIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPHIKKAS >gi|223713575|gb|ACDM01000023.1| GENE 97 104316 - 104585 85 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPAFESRRVRTHPRTVTSLSTATRPWSTSATGTTLIIFSLLIVGKNKHLSTRKWGDTYVT WHLQSDKQNSQMQRKISELKVKKGSRLAP >gi|223713575|gb|ACDM01000023.1| GENE 98 104479 - 105879 1695 466 aa, chain + ## HITS:1 COG:asnS KEGG:ns NR:ns ## COG: asnS COG0017 # Protein_GI_number: 16128897 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 466 1 466 466 959 100.0 0 MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPN YNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEY LREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVS TLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNT SRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRL ERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYP KDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWY RDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF >gi|223713575|gb|ACDM01000023.1| GENE 99 106481 - 107569 1370 362 aa, chain + ## HITS:1 COG:ompF KEGG:ns NR:ns ## COG: ompF COG3203 # Protein_GI_number: 16128896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 362 1 362 362 628 100.0 1e-180 MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDM TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDY GRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYL GKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGL KYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKS KAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVY QF >gi|223713575|gb|ACDM01000023.1| GENE 100 107754 - 108944 1492 396 aa, chain + ## HITS:1 COG:aspC KEGG:ns NR:ns ## COG: aspC COG1448 # Protein_GI_number: 16128895 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 396 1 396 396 812 100.0 0 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL >gi|223713575|gb|ACDM01000023.1| GENE 101 109166 - 109813 569 215 aa, chain - ## HITS:1 COG:ycbL KEGG:ns NR:ns ## COG: ycbL COG0491 # Protein_GI_number: 16128894 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Escherichia coli K12 # 1 215 1 215 215 448 100.0 1e-126 MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDDSGLTLMQILLTHGHLD HVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGDTISIG NVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQLISSIKDKLL PLGDDVIFIPGHGPLSTLGYERLHNPFLQDEMPVW >gi|223713575|gb|ACDM01000023.1| GENE 102 109840 - 110388 424 182 aa, chain - ## HITS:1 COG:ECs1009 KEGG:ns NR:ns ## COG: ECs1009 COG3108 # Protein_GI_number: 15830263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 182 1 182 182 361 100.0 1e-100 MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRG YIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNEL RARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPAR HW >gi|223713575|gb|ACDM01000023.1| GENE 103 110569 - 112416 1329 615 aa, chain - ## HITS:1 COG:ycbB KEGG:ns NR:ns ## COG: ycbB COG2989 # Protein_GI_number: 16128892 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 615 1 615 615 1194 99.0 0 MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM AGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQL AEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKP YALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGK ATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMD KQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA LNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVV VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLP FRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANM LLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA RSSSQIVSKAEQLIR >gi|223713575|gb|ACDM01000023.1| GENE 104 112677 - 117137 6044 1486 aa, chain - ## HITS:1 COG:mukB KEGG:ns NR:ns ## COG: mukB COG3096 # Protein_GI_number: 16128891 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1 1486 1 1486 1486 2526 99.0 0 MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP FAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFD LGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQ QLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDEL QIRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAI AALNRAKELCHLPDLTADCAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQ LVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLA DFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR APVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEI ERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQV TEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGR AARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQ LNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRE RLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFAL TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQV LASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEK ALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAY LSADDLRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQ GLQNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM VVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS >gi|223713575|gb|ACDM01000023.1| GENE 105 117137 - 117841 805 234 aa, chain - ## HITS:1 COG:ECs1006 KEGG:ns NR:ns ## COG: ECs1006 COG3095 # Protein_GI_number: 15830260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 444 99.0 1e-124 MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNHAFLMDFQEYLEEFYAR YNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPERLANEGIFTQQEL YDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRI TESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQLNDETEENQPDSGEEE >gi|223713575|gb|ACDM01000023.1| GENE 106 117822 - 119144 1608 440 aa, chain - ## HITS:1 COG:mukF KEGG:ns NR:ns ## COG: mukF COG3006 # Protein_GI_number: 16128889 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1 440 1 440 440 832 100.0 0 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDE QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT MTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQR LRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLAA IIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPA KWQPINDYGAKVQAHVIDKY >gi|223713575|gb|ACDM01000023.1| GENE 107 119141 - 119926 700 261 aa, chain - ## HITS:1 COG:smtA KEGG:ns NR:ns ## COG: smtA COG0500 # Protein_GI_number: 16128888 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 261 1 261 261 539 100.0 1e-153 MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAI KMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTL SPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEP YITLGRYIHVTARKPQSKDKV >gi|223713575|gb|ACDM01000023.1| GENE 108 120062 - 120841 656 259 aa, chain + ## HITS:1 COG:ECs1003 KEGG:ns NR:ns ## COG: ECs1003 COG1434 # Protein_GI_number: 15830257 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 259 1 259 259 452 100.0 1e-127 MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVAD RLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENP GSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAP FLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE TLGRIWQWLKGSSGEPRQE >gi|223713575|gb|ACDM01000023.1| GENE 109 120818 - 121711 716 297 aa, chain - ## HITS:1 COG:no KEGG:JW0902 NR:ns ## KEGG: JW0902 # Name: ycbJ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 297 1 297 297 588 100.0 1e-166 MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWK TTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEA LLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRE CLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSL AEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA >gi|223713575|gb|ACDM01000023.1| GENE 110 121865 - 122611 788 248 aa, chain - ## HITS:1 COG:kdsB KEGG:ns NR:ns ## COG: kdsB COG1212 # Protein_GI_number: 16128885 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Escherichia coli K12 # 1 248 1 248 248 488 100.0 1e-138 MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEA AGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ VGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLR HLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL ERVRAEMR >gi|223713575|gb|ACDM01000023.1| GENE 111 122608 - 122790 184 60 aa, chain - ## HITS:1 COG:ECs1000 KEGG:ns NR:ns ## COG: ECs1000 COG2835 # Protein_GI_number: 15830254 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 60 1 60 60 119 100.0 2e-27 MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEARVLTADESKS >gi|223713575|gb|ACDM01000023.1| GENE 112 122842 - 124074 742 410 aa, chain - ## HITS:1 COG:ycaQ KEGG:ns NR:ns ## COG: ycaQ COG3214 # Protein_GI_number: 16128883 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 410 1 410 410 822 100.0 0 MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVL FSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQ EHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRN FQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAA WREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKR AEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEG IKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA >gi|223713575|gb|ACDM01000023.1| GENE 113 124111 - 125097 658 328 aa, chain - ## HITS:1 COG:lpxK KEGG:ns NR:ns ## COG: lpxK COG1663 # Protein_GI_number: 16128882 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Escherichia coli K12 # 1 328 1 328 328 649 100.0 0 MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNG KTPVVVWLVEQLQQRGIRVGVVSRGYGGKAESYPLLLSADTTTAQAGDEPVLIYQRTDAP VAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVEIVVIDGVRRFGNGWWLPAGP MRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNLRTGTRCDVAQLEHVVAMAGIGH PPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALVSAGQTLVMTEKDAVKCRAFAEENW WYLPVDAQLSGDEPAKLLTQLTLLASGN >gi|223713575|gb|ACDM01000023.1| GENE 114 125094 - 126842 242 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 359 568 17 229 245 97 32 3e-19 MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTD RSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSI AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQ GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKS LTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALR NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVA LVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS TIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQFGQ >gi|223713575|gb|ACDM01000023.1| GENE 115 126879 - 129143 673 754 aa, chain - ## HITS:1 COG:ycaI_1 KEGG:ns NR:ns ## COG: ycaI_1 COG0658 # Protein_GI_number: 16128880 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Escherichia coli K12 # 1 428 27 454 454 785 100.0 0 MKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLFACVLAFIPVKTVRYIALTLLFFVWG ILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQGRRIFPASGLVMYGEYLP QAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPLTGRFLQASVIEPNCSLRAQY LASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIMRDTGTAHLMAISGLHIAFAALLAA GLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTGMQPPALRTMVALATWGMLKLSGRQ WSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAALIFWYQWFPCPEWQLPPVLRAVVS LIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLIL EQGLWFLADRSLALLFWGLKSLPEGWINIAECWQWLSFSPWFLLVVWRLNAWRTLPAMCV AGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLII PWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQG LRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQ VPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQGQT TVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG >gi|223713575|gb|ACDM01000023.1| GENE 116 129351 - 129635 353 94 aa, chain - ## HITS:1 COG:ECs0995 KEGG:ns NR:ns ## COG: ECs0995 COG0776 # Protein_GI_number: 15830249 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Escherichia coli O157:H7 # 1 94 1 94 94 174 100.0 4e-44 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG >gi|223713575|gb|ACDM01000023.1| GENE 117 129755 - 129853 150 32 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238903721|ref|ZP_04649193.1| ribosomal protein S1 [Escherichia coli BL21(DE3)] # 4 32 542 570 570 62 100 0.0 MQTSPTTQWLKLSKQLKASNSLTLRDFYSEVC >gi|223713575|gb|ACDM01000023.1| GENE 118 129795 - 131468 2807 557 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 EDL933] # 1 557 1 557 557 1085 100 0.0 MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGEL EIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGF TVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSA ERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE ITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGV EGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAET HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL QVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRA SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDA NFSNNAMAEAFKAAKGE >gi|223713575|gb|ACDM01000023.1| GENE 119 131579 - 132262 267 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 7 223 36 286 863 107 30 4e-22 MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDAL VPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAF RELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKE RDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKLALA >gi|223713575|gb|ACDM01000023.1| GENE 120 132435 - 133199 869 254 aa, chain - ## HITS:1 COG:ECs0992 KEGG:ns NR:ns ## COG: ECs0992 COG0501 # Protein_GI_number: 15830246 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli O157:H7 # 1 254 9 262 262 441 99.0 1e-124 MKNTKLLLAIATSAALLTGCQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEM DSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYMTSDVNAWAMANGCVRVYSGLM DMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDIA EGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFEKLASLDGGRTQSMFDSHPPST ERAQHIRDRISSGK >gi|223713575|gb|ACDM01000023.1| GENE 121 133368 - 134651 1359 427 aa, chain - ## HITS:1 COG:ECs0991 KEGG:ns NR:ns ## COG: ECs0991 COG0128 # Protein_GI_number: 15830245 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 427 1 427 427 846 100.0 0 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTAL GVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPR MKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTA PLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE GDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGE LNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVE EGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQL ARISQAA >gi|223713575|gb|ACDM01000023.1| GENE 122 134722 - 135810 1066 362 aa, chain - ## HITS:1 COG:serC KEGG:ns NR:ns ## COG: serC COG1932 # Protein_GI_number: 16128874 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Escherichia coli K12 # 1 362 1 362 362 750 100.0 0 MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR HG >gi|223713575|gb|ACDM01000023.1| GENE 123 136009 - 136701 675 230 aa, chain - ## HITS:1 COG:ycaP KEGG:ns NR:ns ## COG: ycaP COG2323 # Protein_GI_number: 16128873 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 230 1 230 230 463 100.0 1e-130 MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLG SAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAW SKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDC TQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT >gi|223713575|gb|ACDM01000023.1| GENE 124 136831 - 138591 1946 586 aa, chain + ## HITS:1 COG:ycaO KEGG:ns NR:ns ## COG: ycaO COG1944 # Protein_GI_number: 16128872 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 586 4 589 589 1187 100.0 0 MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNG KGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEG LLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVS NGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAE GFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDL DVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLM AIFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGS EWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLEQ ALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEAA SAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKAAFWAK >gi|223713575|gb|ACDM01000023.1| GENE 125 138997 - 139854 673 285 aa, chain + ## HITS:1 COG:ECs0987 KEGG:ns NR:ns ## COG: ECs0987 COG2116 # Protein_GI_number: 15830241 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli O157:H7 # 1 285 1 285 285 535 100.0 1e-152 MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTG TMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFG NLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVW MSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPE NFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRENDHH >gi|223713575|gb|ACDM01000023.1| GENE 126 139909 - 142191 2558 760 aa, chain + ## HITS:1 COG:pflB KEGG:ns NR:ns ## COG: pflB COG1882 # Protein_GI_number: 16128870 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1 760 1 760 760 1565 100.0 0 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVME GVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIE GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIG DYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK YGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQ EAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNT LYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERM DHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI KYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIP TQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYA KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM ENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM >gi|223713575|gb|ACDM01000023.1| GENE 127 142383 - 143123 698 246 aa, chain + ## HITS:1 COG:ECs0985 KEGG:ns NR:ns ## COG: ECs0985 COG1180 # Protein_GI_number: 15830239 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 519 100.0 1e-147 MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEV VTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDEL LEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDS AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY GHKVMF >gi|223713575|gb|ACDM01000023.1| GENE 128 143205 - 143795 424 196 aa, chain - ## HITS:1 COG:ycaK KEGG:ns NR:ns ## COG: ycaK COG2249 # Protein_GI_number: 16128868 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli K12 # 1 196 1 196 196 402 100.0 1e-112 MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWK NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS YYQSLLSQVRDMVDAL >gi|223713575|gb|ACDM01000023.1| GENE 129 143895 - 144803 404 302 aa, chain + ## HITS:1 COG:ycaN KEGG:ns NR:ns ## COG: ycaN COG0583 # Protein_GI_number: 16128867 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 302 1 302 302 632 100.0 0 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYP DIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKP RHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL YEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQICQSQRHR PQ >gi|223713575|gb|ACDM01000023.1| GENE 130 144804 - 146234 1394 476 aa, chain - ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 476 65 540 540 887 100.0 0 MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVG QLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDG SLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPA ITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGML CLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIAN TLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPT LGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGI WCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK >gi|223713575|gb|ACDM01000023.1| GENE 131 146444 - 147592 1052 382 aa, chain - ## HITS:1 COG:ycaD KEGG:ns NR:ns ## COG: ycaD COG0477 # Protein_GI_number: 16128865 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 382 1 382 382 639 100.0 0 MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLL TGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALM CSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRV LNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFW MAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGF TLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASV SFIYLLMLLRNAGHTPKPVAHV >gi|223713575|gb|ACDM01000023.1| GENE 132 147906 - 148532 619 208 aa, chain + ## HITS:1 COG:ycaC KEGG:ns NR:ns ## COG: ycaC COG1335 # Protein_GI_number: 16128864 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli K12 # 1 208 1 208 208 429 100.0 1e-120 MTKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTSF ETGPNGPLVPELKAQFPDTPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVA FPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRLSQAGAQLMTWFGVACELHRDWRNDI EGLATLFSNHIPDYRNLMTSYDTLTKQK >gi|223713575|gb|ACDM01000023.1| GENE 133 148567 - 149430 888 287 aa, chain - ## HITS:1 COG:dmsC KEGG:ns NR:ns ## COG: dmsC COG3302 # Protein_GI_number: 16128863 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Escherichia coli K12 # 1 287 1 287 287 436 99.0 1e-122 MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFI ASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLI VTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWA MRLLPAISVLALVVTGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCL WIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS >gi|223713575|gb|ACDM01000023.1| GENE 134 149432 - 150049 647 205 aa, chain - ## HITS:1 COG:dmsB KEGG:ns NR:ns ## COG: dmsB COG0437 # Protein_GI_number: 16128862 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 205 1 205 205 414 100.0 1e-116 MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFA YYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETK GHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKHGDLAAVAPLPRAHFTKPN IVIKPNANSRPTGDTTGYLANPKEV >gi|223713575|gb|ACDM01000023.1| GENE 135 150060 - 152504 2581 814 aa, chain - ## HITS:1 COG:dmsA KEGG:ns NR:ns ## COG: dmsA COG0243 # Protein_GI_number: 16128861 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 30 814 1 785 785 1635 100.0 0 MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIW SACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRL KYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSW PPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGN NPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGL AYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQIT GVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGA REGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWN YAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFAL DASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQS REAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADI AATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAAC RQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKR VDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV >gi|223713575|gb|ACDM01000023.1| GENE 136 152743 - 154035 1501 430 aa, chain - ## HITS:1 COG:ECs0978 KEGG:ns NR:ns ## COG: ECs0978 COG0172 # Protein_GI_number: 15830232 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 430 1 430 430 865 100.0 0 MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQ AKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDN VEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFM LDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEV PLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED SMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCS NVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLR PYMNGLEYIG >gi|223713575|gb|ACDM01000023.1| GENE 137 154126 - 155469 1085 447 aa, chain - ## HITS:1 COG:ECs0977 KEGG:ns NR:ns ## COG: ECs0977 COG2256 # Protein_GI_number: 15830231 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 872 100.0 0 MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG TGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED KTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEI AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTN RGLEGKIGEKLAWLAEQDQNSPIKRYR >gi|223713575|gb|ACDM01000023.1| GENE 138 155480 - 156091 669 203 aa, chain - ## HITS:1 COG:ECs0976 KEGG:ns NR:ns ## COG: ECs0976 COG2834 # Protein_GI_number: 15830230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Escherichia coli O157:H7 # 1 203 2 204 204 378 100.0 1e-105 MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDL WVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSS DWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQN GAVDAAKFTFTPPQGVTVDDQRK >gi|223713575|gb|ACDM01000023.1| GENE 139 156250 - 160239 3874 1329 aa, chain - ## HITS:1 COG:ftsK KEGG:ns NR:ns ## COG: ftsK COG1674 # Protein_GI_number: 16128857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Escherichia coli K12 # 1 1329 1 1329 1329 2115 99.0 0 MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPI HNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVL ALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTG WSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARIL RGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRAT QPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAW QPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPY YAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE PVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVP PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIR VPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQ QRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMK ALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQ PQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL PSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPG VKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDN PSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFI MIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNE KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIAR LAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLG MGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFD GAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNR EVLAPPPFD >gi|223713575|gb|ACDM01000023.1| GENE 140 160374 - 160868 584 164 aa, chain - ## HITS:1 COG:ECs0974 KEGG:ns NR:ns ## COG: ECs0974 COG1522 # Protein_GI_number: 15830228 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 164 1 164 164 312 100.0 2e-85 MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG YTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTR VPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR >gi|223713575|gb|ACDM01000023.1| GENE 141 161413 - 162378 733 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 10 317 5 306 306 286 49 3e-76 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL TGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYL GLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL FVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSA GTGCMAALDAERYLDGLADAK >gi|223713575|gb|ACDM01000023.1| GENE 142 162501 - 164267 170 588 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 369 570 150 351 398 70 29 6e-11 MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPRE ALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAG SWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFM ALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTM EVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEF FQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEELFITSP EGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPES WRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVG DQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMV THQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI >gi|223713575|gb|ACDM01000023.1| GENE 143 164268 - 165989 1630 573 aa, chain + ## HITS:1 COG:cydC KEGG:ns NR:ns ## COG: cydC COG4987 # Protein_GI_number: 16128853 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components # Organism: Escherichia coli K12 # 1 573 1 573 573 1050 99.0 0 MHALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYM LPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELL NRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPL FYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQ SELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGA FQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIS LQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVP QRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGEL RRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQ QIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL >gi|223713575|gb|ACDM01000023.1| GENE 144 166031 - 166735 400 234 aa, chain + ## HITS:1 COG:aat KEGG:ns NR:ns ## COG: aat COG2360 # Protein_GI_number: 16128852 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Leu/Phe-tRNA-protein transferase # Organism: Escherichia coli K12 # 1 234 1 234 234 493 100.0 1e-139 MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWS PDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAY HRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGH GGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE >gi|223713575|gb|ACDM01000023.1| GENE 145 167020 - 167238 257 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 70 1 70 72 103 65 5e-21 MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY DLSKGRIVFRSR >gi|223713575|gb|ACDM01000023.1| GENE 146 167730 - 168575 426 281 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_3414 NR:ns ## KEGG: ECUMN_3414 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 280 1 280 282 542 94.0 1e-153 MMSDITISRPELVNGHTDVICSTSIRHILAVRKSALLQIDTLIRQLAEISVLTESIGGKT ARDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDAQARDTWYRS LEYDNFPEISEANIWSTFEQLHQNKDDVFERGVINVFRVLSWNYKTNSPCKFGSKIIVNN LVRWDRWGIHLNSGQQTDRLADLERMLHLFSGKPVPDNRENIIIHLDDHIRSVQGKACYE DEMFSIRYFKKGSAHITFRKPELVDRLNDIIARHYPGMLAV >gi|223713575|gb|ACDM01000023.1| GENE 147 168657 - 168854 199 65 aa, chain - ## HITS:1 COG:no KEGG:EC55989_4897 NR:ns ## KEGG: EC55989_4897 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 65 125 189 189 121 90.0 1e-26 MKSLTTETALDILIAWMQDNIDCESGIIFDTDEDKTDSAALLPCIEQAREDIRTLRQQQL LQQNR >gi|223713575|gb|ACDM01000023.1| GENE 148 168871 - 169122 181 83 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_2241 NR:ns ## KEGG: EcSMS35_2241 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 27 83 106 162 162 118 100.0 5e-26 MSRIITTTVYTLHELSSTVREKARDWYLLRTDAWSYPVLRLKRLGLSRTFRRLVVTLTRR YGVSLIHLDAGAECLPGFPTFDW >gi|223713575|gb|ACDM01000023.1| GENE 149 169141 - 169362 317 73 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_2245 NR:ns ## KEGG: EcSMS35_2245 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 73 1 73 73 148 97.0 6e-35 MKIITRGEAMRIHQQHPAPRLFPFCTGKYRWHGSAETYTGREVQDIPGVLAVFAERRKDS FGPYVRLMNVTLN >gi|223713575|gb|ACDM01000023.1| GENE 150 169425 - 169901 427 158 aa, chain - ## HITS:1 COG:ECs2803 KEGG:ns NR:ns ## COG: ECs2803 COG2003 # Protein_GI_number: 15832057 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1 158 1 158 158 302 99.0 2e-82 MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD RLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL >gi|223713575|gb|ACDM01000023.1| GENE 151 169917 - 170390 518 157 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C2275 NR:ns ## KEGG: UTI89_C2275 # Name: yafX2 # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 157 25 181 181 322 94.0 2e-87 MKTLSQNTTSSACAPETDLQQLVATLVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRL CEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNVMNGNRAEMSPEAAGIAACLMAY SHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID >gi|223713575|gb|ACDM01000023.1| GENE 152 170732 - 171550 648 272 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_4894 NR:ns ## KEGG: EcE24377A_4894 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 272 1 272 272 520 97.0 1e-146 MRLASRFGYTNQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRYAYIPTITVLESLQQEG FQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSHDGTSSYQMLPGYFR FVCQNGCVCGQSLGEVRVPHRGNVVDRVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPERQ ELAQAALTYRYGDEHRPVTTADILTPRRREDYGKDLWSTYQTIQENMLKGGISGRSAKGK RIHTRAIHNIDTDIKLNRALWVMAEMLLESLR >gi|223713575|gb|ACDM01000023.1| GENE 153 171988 - 172470 340 160 aa, chain - ## HITS:1 COG:no KEGG:ECO103_3759 NR:ns ## KEGG: ECO103_3759 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 160 66 225 225 272 80.0 3e-72 MKRLHTLMFFLVFLFIGVSPDTNAATVNQTLKCDSKAWSGQPGACPTTYELYEGDATYRV AIDKTLNPVGLDGMFGKDGYMDGPGGGAYPVNINGTTWVEGGGCKAHACGWNFIITLYNP KTHKVVGYYYNIDPGYLIWFGEIGVHEFAYLVKDYVNKTN >gi|223713575|gb|ACDM01000023.1| GENE 154 172913 - 173455 388 180 aa, chain - ## HITS:1 COG:no KEGG:SDY_1017 NR:ns ## KEGG: SDY_1017 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 155 1 155 155 287 87.0 1e-76 MKFIVKALICLAIMLSFTANAAEYKEYPQGEIAYYKYLPKNGWKLPEGYTVEDFTAAIYK GRIRNNFPWTEQFIVRGNGVFLLANKVNKTWHILPVDYQNLNFGRLTTHYQHVNKGDGCY FYILNGLEEDAKPILRIEEKCIDMKMYKKMVAEQKEREQKANQWLQQQILAEHCRRYGNC >gi|223713575|gb|ACDM01000023.1| GENE 155 173590 - 174063 184 157 aa, chain - ## HITS:1 COG:ECs1399 KEGG:ns NR:ns ## COG: ECs1399 COG1752 # Protein_GI_number: 15830653 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 12 157 211 356 356 275 92.0 2e-74 MKAGLQRVPLLFRPREVQGTMYGDGGMGGWRNRQGNTPVTPLVDAGCNMVIVTHLSDGSL WDRRAFPDTTILEIRPRKRLKETGDEGKSGGLLSFTSAHTDAWRQQGYEDTMLTMEHIRK PLAARQALTRSEAVLQKSLEITEGADSALRNAMARIK >gi|223713575|gb|ACDM01000023.1| GENE 156 174017 - 174538 411 173 aa, chain - ## HITS:1 COG:flu KEGG:ns NR:ns ## COG: flu COG3468 # Protein_GI_number: 16129941 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 169 53 221 1091 231 82.0 5e-61 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAIALSLAAVTSVPVVAADTVVQAG ETVSGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQWIQNGGIANNTTVTGGGL QRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGKQWVHEGGIATGAPVVPSP >gi|223713575|gb|ACDM01000023.1| GENE 157 174910 - 175284 244 124 aa, chain - ## HITS:1 COG:yeeP KEGG:ns NR:ns ## COG: yeeP COG3596 # Protein_GI_number: 16129940 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 124 113 236 236 227 98.0 4e-60 GIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLM TRLQDELRTESVRAQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWN WIFF Prediction of potential genes in microbial genomes Time: Mon May 16 18:52:41 2011 Seq name: gi|223713574|gb|ACDM01000024.1| Escherichia sp. 4_1_40B cont1.24, whole genome shotgun sequence Length of sequence - 38025 bp Number of predicted genes - 31, with homology - 31 Number of transcription units - 17, operones - 5 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 2 Tu 1 . - CDS 1345 - 2079 109 ## EcE24377A_2238 hypothetical protein 3 3 Op 1 . + CDS 3319 - 3495 174 ## E2348C_1096 hypothetical protein 4 3 Op 2 27/0.000 + CDS 3535 - 5973 2545 ## COG0286 Type I restriction-modification system methyltransferase subunit 5 3 Op 3 . + CDS 5973 - 7313 568 ## COG0732 Restriction endonuclease S subunits 6 3 Op 4 . + CDS 7325 - 7981 488 ## E2348C_1093 hypothetical protein 7 3 Op 5 . + CDS 7978 - 9045 963 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 8 3 Op 6 8/0.000 + CDS 9064 - 12159 2993 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 9 3 Op 7 . + CDS 12159 - 12875 258 ## COG1451 Predicted metal-dependent hydrolase + Term 13010 - 13055 4.9 10 4 Tu 1 . - CDS 13450 - 15378 296 ## COG4584 Transposase and inactivated derivatives - Term 15707 - 15738 0.1 11 5 Op 1 1/0.667 - CDS 15776 - 17971 1689 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 12 5 Op 2 3/0.333 - CDS 17977 - 19314 746 ## COG3486 Lysine/ornithine N-monooxygenase 13 5 Op 3 5/0.000 - CDS 19311 - 21053 1499 ## COG4264 Siderophore synthetase component 14 5 Op 4 5/0.000 - CDS 21053 - 22000 242 ## PROTEIN SUPPORTED gi|229250525|ref|ZP_04374554.1| acetyltransferase, ribosomal protein N-acetylase 15 5 Op 5 . - CDS 22001 - 23725 1364 ## COG4264 Siderophore synthetase component - Prom 23809 - 23868 6.9 + Prom 23752 - 23811 7.1 16 6 Tu 1 . + CDS 23861 - 25054 596 ## COG0477 Permeases of the major facilitator superfamily + Prom 25404 - 25463 2.3 17 7 Tu 1 . + CDS 25543 - 26430 513 ## COG2801 Transposase and inactivated derivatives + Term 26517 - 26558 -1.0 - Term 26432 - 26467 -0.9 18 8 Tu 1 . - CDS 26470 - 26769 95 ## COG2801 Transposase and inactivated derivatives - Prom 26897 - 26956 5.6 19 9 Op 1 . - CDS 27128 - 27769 385 ## ECSP_1312 hypothetical protein 20 9 Op 2 . - CDS 27793 - 27996 115 ## ECH74115_1387 LdaB 21 10 Op 1 8/0.000 - CDS 28141 - 28779 476 ## COG1475 Predicted transcriptional regulators 22 10 Op 2 . - CDS 28764 - 29996 573 ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase - Prom 30067 - 30126 4.7 + Prom 29982 - 30041 4.0 23 11 Tu 1 . + CDS 30224 - 30352 76 ## ECH74115_1384 hypothetical protein - Term 30266 - 30318 0.9 24 12 Tu 1 . - CDS 30497 - 33178 840 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits - Prom 33226 - 33285 3.1 25 13 Tu 1 . - CDS 33419 - 34153 422 ## COG2831 Hemolysin activation/secretion protein 26 14 Tu 1 . - CDS 34568 - 34717 81 ## gi|300946335|ref|ZP_07160618.1| conserved hypothetical protein - Prom 34812 - 34871 4.3 + Prom 34983 - 35042 2.4 27 15 Tu 1 . + CDS 35139 - 35330 214 ## ECH74115_1377 hypothetical protein + Term 35520 - 35556 -0.9 - Term 35175 - 35213 -0.2 28 16 Op 1 . - CDS 35383 - 35616 245 ## EC55989_3343 hypothetical protein - Prom 35649 - 35708 4.4 29 16 Op 2 . - CDS 35712 - 36335 529 ## EC55989_3344 hypothetical protein - Prom 36356 - 36415 2.3 30 16 Op 3 . - CDS 36424 - 36933 54 ## ECSP_1300 hypothetical protein - Prom 37007 - 37066 3.1 + Prom 37550 - 37609 3.0 31 17 Tu 1 . + CDS 37664 - 37849 103 ## ECH74115_1372 hypothetical protein Predicted protein(s) >gi|223713574|gb|ACDM01000024.1| GENE 1 277 - 795 180 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256023430|ref|ZP_05437295.1| ## NR: gi|256023430|ref|ZP_05437295.1| hypothetical protein E4_08653 [Escherichia sp. 4_1_40B] # 1 172 1 172 172 295 100.0 5e-79 MTILEEMEAEAWHILTTIYTYQRLMEGLTNSSTRYELANQLVALNALLEMLVIRLARLAD KRKDVRSVSMFLKRGSYSASPEAVKLAAEKFLALAEPVLKIRHEQIAHMKPGTLSSFEPR ELPNEALRATEALIDLIDIARDHPQSYTYRVGSQEPAINLRASVETSELVKI >gi|223713574|gb|ACDM01000024.1| GENE 2 1345 - 2079 109 244 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_2238 NR:ns ## KEGG: EcE24377A_2238 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 178 78 255 459 304 87.0 2e-81 MDRVILDDVLYSLSLRYRVNLSENVVEKFIESDSKEKVEHLRKEIARFIRFAKENFDLIR GEFIVFVRRESSIKDSERANGILEDNSDTNFLFRYLPPNIARLYENRLSVQNIERLGNTN KIRLLNRNVLTNEIMLKIKDCESTYTNGYMYQYINNAIDNDDGTISMEIVMGKHSGKKVM NGGCREQKIVQFSFIIKTLLLILTKRIHAERPWAHIAHFMEKFFVNWIKGMKFRGLNSLL TFHF >gi|223713574|gb|ACDM01000024.1| GENE 3 3319 - 3495 174 58 aa, chain + ## HITS:1 COG:no KEGG:E2348C_1096 NR:ns ## KEGG: E2348C_1096 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 3 57 1 55 79 94 87.0 9e-19 MNMNEDEINRHIRQALSSAPRNQYTVELHLQMIKYADELEHITAKAFCEGIGLNTDLL >gi|223713574|gb|ACDM01000024.1| GENE 4 3535 - 5973 2545 812 aa, chain + ## HITS:1 COG:HP1403_1 KEGG:ns NR:ns ## COG: HP1403_1 COG0286 # Protein_GI_number: 15646013 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori 26695 # 1 463 1 476 479 587 62.0 1e-167 MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMIVIPKGAS FDDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADFNDEDKLGKGKEMIDRLSKLVG IFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVIGITPDT PQDATVYDPTCGSGSLLLKVNDEARRGLSIFGQEMDNATSALARMNMILHNNATAKIWQG NTLSDPQWKEANGKLKAFDFAVANPPFSNKNWTNGLTPKKDPFERFGWGIPPEKNGDYAF LLHIIKSLKSTGKGAVILPHGVLFRGNAEANIRENLIKQGYIKGVIGLPANLFYGTGIPA CIIVIDKEHAHSRKGIFMIDASRGFIKDGNKNRLRSRDIHRIVDVFNHQRTVPGYSRMVP SSEIAGNDYNLNIPRYIESGEPEDLHDLTAHLQGGIPARDVDALQDYWRVFPALRNVLFA DDRPGYCRAQVNAQQVKPTILAHQEFKDFATRSLLPFKAWVKEASLEEIRKGDKPKALIH DISEMLLAQYANSELLNKYSVYQILMDYWTDVMQDDVYAIMQDGWQAAAQIRELQPVKGK DGKNIWKETHDFEFTKRRYKADVLPRSLVEIRCFPELLDALNRAQERSEEASRQLVEFIE EQAGEEDLLAEAKNDKDKVTQKLVNARLAQLKKTTAGPDELAVLNRCLALIKAEASAKKA LKAAQEALDRAVFKHYPTLDEAAIKTLVVQDKWLATLQAGIKAEIERITQQLASRVKELE ERYAEPLLALEASVEALSEKVAEHLRAMGLEW >gi|223713574|gb|ACDM01000024.1| GENE 5 5973 - 7313 568 446 aa, chain + ## HITS:1 COG:MJ0130m KEGG:ns NR:ns ## COG: MJ0130m COG0732 # Protein_GI_number: 15669898 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 22 445 8 423 425 137 29.0 4e-32 MVDLMVNEQRSSTAGKDVPAGYKLTEVGVIPEDWDCVPFGNLFKTNTKKKKVSDYELVSF IGMQDVSEDAQLKNNTQLPFKEVKSGFTYFEKGDVLLAKITPCFENGKGCHTADLPTNVG FGSTEFHVLRENEDSDSRFIYFWTTDKKFRASLESEMVGSAGHRRVPLVAIEKYLIPCPP NLQEQSAIADSLSDINNFILALEKLIVKKQAIKTATMQRLLTGKTRLPQFALRKDGSAKG YKKSELGEIPEDWVVTSIGQFTDCCAGGTPSTKISAYWGGTHPWMSSGELHLKQVYAVAD YITDEGLVNSSTKYVPKNSVLVGLAGQGKTRGTVAINRIELCTNQSIAAIFPSKHHSTEF LFYNLDSRYEELRSLSTGDGGRGGLNLTIIRKLHLAFPPKEEQTAIATILSDMDKEIQTL QQRLDKTRQLKQGMMQELLTGKTRLI >gi|223713574|gb|ACDM01000024.1| GENE 6 7325 - 7981 488 218 aa, chain + ## HITS:1 COG:no KEGG:E2348C_1093 NR:ns ## KEGG: E2348C_1093 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 218 1 218 218 456 99.0 1e-127 MAYDYSASLNPQKALIWRIVHRDNIPWILDNGLHCGNSLVQAENWINIGNPELIGKRAGH PVPVGTGGTLHDYVPFYFTPFSPMLMNIHSGRGGIKRRPNEEIVILVSNLRNVAAHDVPF VFTDSHAYYNWTNYYTSLNSLDQIDWPILQARDFRRDPDDPAKFERYQAEALIWQHCPIS LLDGIICYSEEVRLQLEQWLFQRNLTMSVHTRAGWYFS >gi|223713574|gb|ACDM01000024.1| GENE 7 7978 - 9045 963 355 aa, chain + ## HITS:1 COG:MT0066 KEGG:ns NR:ns ## COG: MT0066 COG2110 # Protein_GI_number: 15839437 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Mycobacterium tuberculosis CDC1551 # 1 351 1 349 352 257 40.0 3e-68 MITYTQGNLLDAPVEALVNTVNTVGVMGKGIALMFKERFPENMKVYALACKQKQVITGKM FITETGELMGPRWIVNFPTKQHWRADSRMEWIEDGLQDLRRFLIEENVQSIAIPPLGAGN GGLNWPDVRAQIESALGDLQDVDILIYQPTEKYQNVAKSTGVKKLTPARAAIAELVRRYW VLGMECSLLEIQKLAWLLQRAIEQHQQDDILKLRFEAHYYGPYAPNLNHLLNALDGTYLK AEKRIPDSQPLDAIWFNDQKKEHVNAYLNNEAREWLPALEQVSQLIDGFESPFGLELLAT VDWLLSRGECQPTLDSVKEGLHQWPAGERWASRKLRLFDNNNLQFAINRVMEFHC >gi|223713574|gb|ACDM01000024.1| GENE 8 9064 - 12159 2993 1031 aa, chain + ## HITS:1 COG:jhp1424 KEGG:ns NR:ns ## COG: jhp1424 COG0610 # Protein_GI_number: 15612489 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Helicobacter pylori J99 # 6 1031 2 991 991 903 47.0 0 MSTVGQRERATQQRLIQFFVEDLGYRHLSHRTGYTGNSNIDTNILSAWLKRRGVNDTLIT RALRQLDSAAALGEGKKLYYANKEVYRLLRYGVKDKEGAGEQNQTVWLIDWANPQANDFA IADEVTVKGEYCKRPDLVLYVNGIALGVIELKRSSVHVSEGIRQNLDNQKKTFIRDFFTT MQLVMAGNDTQGLRYGTIETPEKYYLEWKEDNPGDYTHKLDFHLSRLCSKSRLLDIVHNY IAFDVGVKKLCRHNQFFGVEAAKQHIARREGGIIWHTQGSGKSLTMVWLAKWIRENVPNS RVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIATLNHPNPWLICSLVHKFGRRSEA EDNAATDAFITELQQSLTKTFRAKGDLFVFVDECHRTQSGKLHNAMTAILPDALFIGFTG TPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVLDLRYEARDIDQYLTSEKKVDDWFEAK TRGLSNLARTQLKQKWGSMQKLLSSKSRLEQIVNDILLDMDTRPRLMDGRGNAMLVCSSI YQACKVYEMFSQTELAGKVAIVTSYRPDAASIKGEETGEGLTEKLSKHATYRKMLADYFE QSEEKAAARITEFEREVKQRFIEEPGQMRLLIVVDKLLTGFDAPSATYLYIDKTMTDHTL FQAICRVNRLDGEDKEYGYIIDYKDLFRSLDKAITDYTTGAFDDYDRDDVAGLLKDRLEQ AQLDLDSALEMVRSLCEPVKTPRSLQDYQHYFCGESGENQTSLNEKEALRLTFYQCVARL LRAYASIANEMPEAGYTAEEVESIRAEVAEFEKLRYEIKLTSGDLLDMKRFEPAMRHLLD MYVRADDSEVLMDFEELSLIELIVEKGLAATVALPDDIRNNQDAMAETIENNVRKTIVDE NPVNPKYYGRMSQLLDELITLRRQNALNYQQYLERIRDLCKQVIRPEQTAGACYPATMDT QAKRAFYDNFGHDEVLATRIDTTIRYTKRAEWIGDRFKEREIANALREETASYNIDIDEV IALARQQKEYH >gi|223713574|gb|ACDM01000024.1| GENE 9 12159 - 12875 258 238 aa, chain + ## HITS:1 COG:jhp1425 KEGG:ns NR:ns ## COG: jhp1425 COG1451 # Protein_GI_number: 15612490 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 4 223 6 224 235 161 37.0 8e-40 MPIMQIGSLHLLVNRKAIKNLHISVLPPDGKVRVSAPEHMTETAIRMAVASRFRWIRKQQ QDFARQPRQSEREMVSGECHYLWGRRYRLLVIERHGRHEVKVAGNNKLQLYVQPGTRDEN KALALNEFYRHELKQQVAKLLPEWQDRIGVPLTFWGIKKMKTFWGTCNTTTKRIWLNLEL IKKPPECLEYILVHELVHLLERHHNARFRLHMDRFIPDWRERRDLLNNMPLAFEAWEY >gi|223713574|gb|ACDM01000024.1| GENE 10 13450 - 15378 296 642 aa, chain - ## HITS:1 COG:AGl6 KEGG:ns NR:ns ## COG: AGl6 COG4584 # Protein_GI_number: 15890093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 325 165 490 530 267 40.0 4e-71 MRQEHRAGEKLFIDFCGPTVPVINPDTGEIRRVAIFVAVMGASNYTYVEACEGQDMMSWL NAHSRCLTFLGGVPKLLIPDNLRSAVKKADRYEPVINDSYQALAEHYGTVIIPARPRKPK DKPKAENGVLIVERWLLARIRNETFHTLRALNARLRELLTDMNNRPMKGYGNQTRAERFR MLDAPALSPLPLEPYEYTEYKAVKVGPDYHVEYARHWYSVPHELVGQRLSLKVGQSVVQL WHKGQCVAQHPRSTHEYKHTTNPLHMPERHRRHGTWTPERLIEQGNRTGPSTGRVVESML KAKPHPELAYRAVLGLRHFRKNTARNGWKRPVTLPCTITPRTDALSTICCVIIGITLSFR YPARANNIRHMLQSMKTCVVLATTTDRRNNRMSDNLLNKLTQLKLPAMAGSLIRQRETPQ TYDELSFEERLTLLVDDELLSRENSRVARLRKNACLKYQATPEGLRYPASRGLRAEQMRE LLNGHYIIHRKNLLITGPTGCGKSWIANALGEQACRQKYSVRYCRTGRLLEQLAQGRVDG SWLKYLKQLQKIQVLILDDLGLEQLSNAQCNDLLEITEDRYGQSSTIVVSQFPVDKWHGL MENPTTADAILDRLVHNSHRVVLQGESLRKNPPTVESSEKTS >gi|223713574|gb|ACDM01000024.1| GENE 11 15776 - 17971 1689 731 aa, chain - ## HITS:1 COG:YPO0994 KEGG:ns NR:ns ## COG: YPO0994 COG1629 # Protein_GI_number: 16121296 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 1 731 1 726 726 951 65.0 0 MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAEMAQTTWVIENAELEQQ IQGGKELKDALVQLIPGLDVSSQSRTNYGMNMRGRPLVVLIDGVRLNSSRSDSRQLDSVD PFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMMEFEAGTKSGFNSSKDHDERIA GAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQTGLQHSNRLDIMGTGTLNIDES RQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPYVSKGLNSDRIPGTERHLISLQYSD SDFLRQELVGQVYYRDESLRFYPFPTVNANKQATAFSSSQQDTDQYGMKLTLNSQLMDGW QITWGLDAEHERFTSNQMFFDLAQASASGGLNNHKIYTTGRYPSYDITNLAAFLQSSYDI NDIFTVSGGVRYQYTENRVDDFIDYTQQQKIAAGKAISADAIPGGSVDYDNFLFNAGLLM HITERQQAWFNFSQGVALPDPGKYYGRGIYGAAVNGHLPLTKSVNVSDSKLEGVKVDSYE LGWRFTGDNLRTQIAAYYSLSNKSVERNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWST GVNFNVLKTESKVNGQWQKYDVKESSPSKATAYISWAPEPWSLRVQSTTSFDVSDAEGND INGYTTVDFISSWLLPVGTLSFSVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRG RTFGLNYSVLF >gi|223713574|gb|ACDM01000024.1| GENE 12 17977 - 19314 746 445 aa, chain - ## HITS:1 COG:YPO0993 KEGG:ns NR:ns ## COG: YPO0993 COG3486 # Protein_GI_number: 16121295 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Lysine/ornithine N-monooxygenase # Organism: Yersinia pestis # 1 436 1 437 442 558 59.0 1e-159 MKKSVDFIGVGAGPFNLSIAALSHQIEELNCLFFDEHPHFSWHPGMLVPDCHMQTVFLKD LVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDYLRWAAEDMNNLYFSHTVE NIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVKHVTQSCFHASEMNLRRPDLS GKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRNNFNALDEAAFADEYFTPEYISG FSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELYHRFEVLRKPRNIRLLPSRSVTTLE SSGPGWKLLMEHHLDRGRESLESDVVIFATGYRSALPQILPSLMPLITMHDKNTFKVRDD FTLEWSGPKENNIFAVNASMQTHGIAEPQLSLMAWRSARILNRVLGRDLFDLSMPPALIQ WRSGSRKKPQPEAAALTHYTTNIQE >gi|223713574|gb|ACDM01000024.1| GENE 13 19311 - 21053 1499 580 aa, chain - ## HITS:1 COG:YPO0992 KEGG:ns NR:ns ## COG: YPO0992 COG4264 # Protein_GI_number: 16121294 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Yersinia pestis # 2 577 5 579 582 777 65.0 0 MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES >gi|223713574|gb|ACDM01000024.1| GENE 14 21053 - 22000 242 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229250525|ref|ZP_04374554.1| acetyltransferase, ribosomal protein N-acetylase [Catenulispora acidiphila DSM 44928] # 150 306 29 184 194 97 32 9e-20 MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGWLCDALDQIFIAAPQLS AVALPWAEWCEEPQALTLFGQVKSDIIHRTAFWQLPLWLSSPANRASGEMVFDAEREIYF PQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRWMNDPRVEYFWEQSGSLEVQT AYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIGRHYSWQPFDRGLHLLVGEQQWR GAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQRLFRHLEPAGYRTIKEFDFPHKRSR MVMADRHHFFTEVGL >gi|223713574|gb|ACDM01000024.1| GENE 15 22001 - 23725 1364 574 aa, chain - ## HITS:1 COG:SMa2404 KEGG:ns NR:ns ## COG: SMa2404 COG4264 # Protein_GI_number: 16263713 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Sinorhizobium meliloti # 9 573 6 579 585 212 28.0 2e-54 MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELIIPLDEQKSLHFRVAYFSPTQH HRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLCETFHQRVLESHAHTQQAI DARHDWTALREKALNFGEAEQALLTGHAFHPAPKSHEPFNRREAERYLPDMAPHFPLRWF SVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDNQWLFPLHPWQGEYLLQQGWCQA LVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIKFSLSVRLTNSIRTLSVKEVKRGMR LARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDLNGNIMQESLFALRENLLVDQPKSQTN VLVSLTQAAPDGGDSLLVSAVKRLSDRLGITVQQAAHAWVDAYCQQVLKPLFTAEADYGL VLLAHQQNILVQMLGDLPVGFIYRDCQGSAFMPHATDWLDSIGEAQAENIFTHEQLLRYF PYYLLVNSTFAVTAALGAAGLDSESNLMARVRASLAEVRDQVTHKTCLNYVLESPYWNVK GNFFCYLNDHNENTIVDPSVIYFDFANPLQAQEV >gi|223713574|gb|ACDM01000024.1| GENE 16 23861 - 25054 596 397 aa, chain + ## HITS:1 COG:YPO0988 KEGG:ns NR:ns ## COG: YPO0988 COG0477 # Protein_GI_number: 16121292 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 16 391 20 395 407 306 58.0 3e-83 MSPGIEDTPQKPLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTNLSLSVWAALLMLGSML FLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLMATSAITTAVGLGILIIAR IAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSCGRLFGPLCAAAMLAIHPLAP LGLLMAAPVLALLMLLRLPGTPPQPTPERKSVSLKRDCLPYLLCAILLAAAVSMMQLGLS PALTRQFATDTTAISQQVAWLLGLSAVAALIAQFGVLRPQRLTPVALLLSAGVLMSGGLA IMLSEQLWLFYPGCAVLSFGAALATPAYQLLLNDKLADGAGAGWLATSHTLGYGLCALLV PLVSKTGVAIALIMAALFATILFTIVSVFIWHYRAIK >gi|223713574|gb|ACDM01000024.1| GENE 17 25543 - 26430 513 295 aa, chain + ## HITS:1 COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 295 2 296 296 577 98.0 1e-164 MPLLDKLREQYGVRPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKKEIQRVYDE NHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVN RQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQA LWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA >gi|223713574|gb|ACDM01000024.1| GENE 18 26470 - 26769 95 99 aa, chain - ## HITS:1 COG:VC0817 KEGG:ns NR:ns ## COG: VC0817 COG2801 # Protein_GI_number: 15640835 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 19 99 35 115 327 86 58.0 1e-17 MKRPVMRDLYAVAVAFLGPHCVKWWRRYLAQGIAGLESHSRRPKRSPSTKTGTCEVALIL ELRSQRNLGARRIQSELKRLHSISLAIATIHKVLFQNQV >gi|223713574|gb|ACDM01000024.1| GENE 19 27128 - 27769 385 213 aa, chain - ## HITS:1 COG:no KEGG:ECSP_1312 NR:ns ## KEGG: ECSP_1312 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 213 2 214 214 400 100.0 1e-110 MKQGMANSISMTWQLLCDEHGFTREHYNQLKKFSPETLREIIAEIASCHPSTSVLLRNKW LTPPEDILEQITREYERRIQNCPPFRSEKEAESWLNELSFAVIAPLYRVAPEQTEQVESF VLQLIAEQERVWELILTNDGYSWHCALYDILFHLVLRNMEDQPEHQKQRITKIFYEPDAR LVAEEIKFRIQSLYDDEQKRALSELVNDFTSKE >gi|223713574|gb|ACDM01000024.1| GENE 20 27793 - 27996 115 67 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_1387 NR:ns ## KEGG: ECH74115_1387 # Name: not_defined # Def: LdaB # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 67 23 89 89 129 98.0 4e-29 MGNVECTEAQREWLLLRRNYCLAQISSPPLPEKLDISEVAKAADATLRRMGIATPSGEVF RKGTPVC >gi|223713574|gb|ACDM01000024.1| GENE 21 28141 - 28779 476 212 aa, chain - ## HITS:1 COG:ECs1387 KEGG:ns NR:ns ## COG: ECs1387 COG1475 # Protein_GI_number: 15830641 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 212 1 212 212 427 100.0 1e-120 MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEV VANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKR LKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTNERIGTEL GMDQDEVLRLKQISGLTELFQEEDFSPAWTVR >gi|223713574|gb|ACDM01000024.1| GENE 22 28764 - 29996 573 410 aa, chain - ## HITS:1 COG:ECs1386 KEGG:ns NR:ns ## COG: ECs1386 COG3969 # Protein_GI_number: 15830640 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli O157:H7 # 1 410 1 410 410 830 99.0 0 MSDTLLTEKILTGENVLRAAIARIEWIFETFPSVCLSFSGGKDSTVLFHLVAEVARRRKR HFSVLFIDWEAQYRCTIEHIQKMREMYHDVTETFYWVALPLTTVNGVSQFQPEWICWEPG VTWVRQPPEEAITDMTYFPFFRYAMTFEEFVPAFSSWFAGNRCGVAVLTGVRADESLNRF MGLVSQRKLRYADDKPWTTASPEGFYYTMYPLYDWKARDIWIYNARACAIYNPLYDLMYR ADVPLRNMRVCEPFGPEQRKGLWLYHVLEPETWARMCERVSGAASGALYANESGAYFALR KRISKPAHHTWRSYAMFLLDVMPERTAEHYRNKIAVYLRWYQTRGFPDDIPDEQENDLGS RDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLQRMKERRKEWGIL >gi|223713574|gb|ACDM01000024.1| GENE 23 30224 - 30352 76 42 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_1384 NR:ns ## KEGG: ECH74115_1384 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 42 1 42 42 66 100.0 4e-10 MQMVNNSNIILQEVFTVIELPPDKVYSLRNYSTETFPVSFEQ >gi|223713574|gb|ACDM01000024.1| GENE 24 30497 - 33178 840 893 aa, chain - ## HITS:1 COG:Z1202 KEGG:ns NR:ns ## COG: Z1202 COG1112 # Protein_GI_number: 15800723 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Escherichia coli O157:H7 EDL933 # 183 893 1 711 711 1428 99.0 0 MVTICVDGENKTHKITDWTLWAGNDDREVMLTCHFRSGRKYTRPLSVCQITPTVNLRNVF LERKGNAVTSRAELVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR VANERIFYARGNNRNIDENILRQIKKIVPHPDTALHAYCSGQSKKRDSPWGLIFPFGLNE SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM DKQQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN RIDLLLNFMILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEVFKKSDFKIL LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGA LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPNSPSPPAEYYNCEKY SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITA KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG >gi|223713574|gb|ACDM01000024.1| GENE 25 33419 - 34153 422 244 aa, chain - ## HITS:1 COG:Z1200 KEGG:ns NR:ns ## COG: Z1200 COG2831 # Protein_GI_number: 15800721 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Hemolysin activation/secretion protein # Organism: Escherichia coli O157:H7 EDL933 # 1 244 105 348 348 460 100.0 1e-129 MSTLQNRLVDHGYVTTRVLAPSQDLKSGILRLVIIPGVVRHVRLTPDSDDYIQLYSSFPA HEGSLLDLRDIEQGLDLGNSRIQGQHTELNATSGNLSTQNAQLSADTLSARTAGQFSSNG GTINADTLQISAQSLSNRKGSLIQTGTGDFSLSLPGSVDNREGLLAANGAVRLDALSLDN RKGKVQAEQSPSLQKSPPTFLKPFVAGVCAALLAVSVAIPGWQFLTQPSPEEQHFTWGNG CKKQ >gi|223713574|gb|ACDM01000024.1| GENE 26 34568 - 34717 81 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300946335|ref|ZP_07160618.1| ## NR: gi|300946335|ref|ZP_07160618.1| conserved hypothetical protein [Escherichia coli MS 116-1] # 1 49 1 49 49 68 100.0 2e-10 MIKIKSILAGLLLSILVPVDAGKYRKGGSVPSQNMVGGIVRRLVIVGMT >gi|223713574|gb|ACDM01000024.1| GENE 27 35139 - 35330 214 63 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_1377 NR:ns ## KEGG: ECH74115_1377 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 63 1 63 63 114 98.0 1e-24 MSEDVPLPKVNQRYKDDHGALVTLTSVEETRVVFMQDGYPHPCMRPMYNFLGKFKPEPRE EKE >gi|223713574|gb|ACDM01000024.1| GENE 28 35383 - 35616 245 77 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3343 NR:ns ## KEGG: EC55989_3343 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 77 26 102 102 146 98.0 2e-34 MARSDYDIINLSLEHELNEWLAERGYAGLVDNRNRLAEVVTRKLQDSFYINVSRDALNTA YSEHPEWFSGLVSGDEN >gi|223713574|gb|ACDM01000024.1| GENE 29 35712 - 36335 529 207 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3344 NR:ns ## KEGG: EC55989_3344 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 207 13 219 219 407 98.0 1e-112 MRTRIDYLADKYCFTERNESPRLRRQWQDVLEECRQTEAGPEERLRIALLNVDYVTSFEL PFRLLLTRTPQLIAALREEWGISQKNVVFNDKRFGCVYSLKASLSGVPDTYRYHLSHRIR RVVGNENTSLPYQQVAREVKAPRERLKYALEAGLLVTALDGLFWFGSQRIAADVLRLRKA GMPVVTTTVEVHDNLTGTTRKVPAYHL >gi|223713574|gb|ACDM01000024.1| GENE 30 36424 - 36933 54 169 aa, chain - ## HITS:1 COG:no KEGG:ECSP_1300 NR:ns ## KEGG: ECSP_1300 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 169 1 169 169 324 100.0 8e-88 MQITEALISEPGEIRRFVQQAVDHWPNLLAFHFTLYSAEGIYGQQIQTFCSSFHRRVHER ITEHNHTVSPSAPVVLRWLREQHEGAQIRCLLLLSQTSICHPRVGVMADEECAQLVDLLQ QTWSVISAGGQCRVERCFRVARPGSSGQYVALKTAVQSFMSQVIATIIR >gi|223713574|gb|ACDM01000024.1| GENE 31 37664 - 37849 103 61 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_1372 NR:ns ## KEGG: ECH74115_1372 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 61 92 152 152 115 100.0 7e-25 MRKYYRHILVRGKETETISERLIREADTREYELWRPVRRFFSIVFLIVLLGCIHSLITTI K Prediction of potential genes in microbial genomes Time: Mon May 16 18:53:21 2011 Seq name: gi|223713573|gb|ACDM01000025.1| Escherichia sp. 4_1_40B cont1.25, whole genome shotgun sequence Length of sequence - 10229 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 9, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 404 - 1528 243 ## COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - Prom 1581 - 1640 4.8 - Term 2141 - 2184 2.0 2 2 Tu 1 . - CDS 2258 - 2455 216 ## COG3311 Predicted transcriptional regulator - Prom 2571 - 2630 3.2 - Term 2928 - 2969 3.2 3 3 Tu 1 . - CDS 3020 - 3292 84 ## ECSP_1291 hypothetical protein 4 4 Op 1 . + CDS 3380 - 3559 140 ## ECED1_5037 hypothetical protein 5 4 Op 2 . + CDS 3611 - 3805 150 ## ECH74115_1362 hypothetical protein + Prom 3874 - 3933 3.6 6 5 Tu 1 . + CDS 4166 - 4294 106 ## gi|217328106|ref|ZP_03444188.1| transposase OrfB - Term 5470 - 5514 -0.8 7 6 Tu 1 . - CDS 5574 - 5792 93 ## ECO111_1264 hypothetical protein - Prom 5812 - 5871 3.2 + Prom 6559 - 6618 6.5 8 7 Tu 1 . + CDS 6640 - 6852 61 ## + Term 7100 - 7139 2.1 + Prom 7115 - 7174 7.5 9 8 Tu 1 . + CDS 7244 - 9334 1447 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins + Term 9368 - 9416 -0.1 + Prom 9437 - 9496 2.7 10 9 Tu 1 . + CDS 9595 - 9792 123 ## ECO111_1262 hypothetical protein Predicted protein(s) >gi|223713573|gb|ACDM01000025.1| GENE 1 404 - 1528 243 374 aa, chain - ## HITS:1 COG:ECs1370 KEGG:ns NR:ns ## COG: ECs1370 COG1819 # Protein_GI_number: 15830624 # Func_class: G Carbohydrate transport and metabolism; C Energy production and conversion # Function: Glycosyl transferases, related to UDP-glucuronosyltransferase # Organism: Escherichia coli O157:H7 # 1 374 1 374 374 763 100.0 0 MRKRILFIGPPLYGLLYPLISLAQAFRVIGHDVVISSAGKFANKAAEAGLVVFDAVPGLD SEAGYRHQEELRKKSNIIGHFSFFSDEMADNLIDFAGKWRPDLIVYPPLDPAGPLVAAKY RIPSVMLAVGFAHTSAHIQMLNRSLSNAYRRHGVSGPLCDLAWIDVAPPSMSILKNAGEP VISMRYIPYNGGAVKETWWDRDSDRKRLLISLGTVKPMVDGLELISWVMDSANEVDADII LQLAINARTGLRKLPSNVRLVDWIPMGVFLNGADGFIHHGGAGNTLTALYSGIPQIVFGE GADRSVNAEIVAKRGCGIIPDKHGLTSDLVNRLLYDDSLRFCSDQVAAEMAEQPSPAEIA EVLMRKLKNNGKQL >gi|223713573|gb|ACDM01000025.1| GENE 2 2258 - 2455 216 65 aa, chain - ## HITS:1 COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 1 65 1 65 65 121 100.0 3e-28 MLTTTSHDSVFLRADNSLIDMNYITSFTGMTDKWFYKLISEGHFPKPIKLGRSSRWYKSE VEQWK >gi|223713573|gb|ACDM01000025.1| GENE 3 3020 - 3292 84 90 aa, chain - ## HITS:1 COG:no KEGG:ECSP_1291 NR:ns ## KEGG: ECSP_1291 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 90 1 90 90 164 98.0 1e-39 MSYQPGGLVLPDLSRRGYLSKNASSSNRFGLVNGDGLSKDSRCWCTFSRWRSSMDNAIAC SSSLVIVCTWKAIYRSTSHYGKNVLLLQLA >gi|223713573|gb|ACDM01000025.1| GENE 4 3380 - 3559 140 59 aa, chain + ## HITS:1 COG:no KEGG:ECED1_5037 NR:ns ## KEGG: ECED1_5037 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 59 1 59 59 97 100.0 2e-19 MDLSPEDAKFLRELQHRMLREAIIEQQTGMSAIDPLRYKRASSPLVDDNSNADKTRPPH >gi|223713573|gb|ACDM01000025.1| GENE 5 3611 - 3805 150 64 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_1362 NR:ns ## KEGG: ECH74115_1362 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 64 1 64 64 105 100.0 5e-22 MNENKIKRLEQLLQARQREFATKWGRAALPHERLTYFPLEDLIKNNGKKIRSDKKHFLEC NEDK >gi|223713573|gb|ACDM01000025.1| GENE 6 4166 - 4294 106 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|217328106|ref|ZP_03444188.1| ## NR: gi|217328106|ref|ZP_03444188.1| transposase OrfB [Escherichia coli O157:H7 str. TW14588] # 1 42 1 42 42 73 100.0 3e-12 MGADVTEFSVQGKSGTCRQFSDLFNREIISYSLSERSVMEHR >gi|223713573|gb|ACDM01000025.1| GENE 7 5574 - 5792 93 72 aa, chain - ## HITS:1 COG:no KEGG:ECO111_1264 NR:ns ## KEGG: ECO111_1264 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 72 19 90 90 132 98.0 5e-30 MFKYAEMLMAEEDDKVCELIFKQQDNLILKINDRFPRIIIKKYRTLQGKVVWLWILPFVI EWLIVCTLGVNS >gi|223713573|gb|ACDM01000025.1| GENE 8 6640 - 6852 61 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPYHDYEYQQDTTDIRKDTTFFTPENNAKKLLPHRLSLVLSAPTMWADMIKLSRKLFASS ADNPNGDCLC >gi|223713573|gb|ACDM01000025.1| GENE 9 7244 - 9334 1447 696 aa, chain + ## HITS:1 COG:ECs1360 KEGG:ns NR:ns ## COG: ECs1360 COG4771 # Protein_GI_number: 15830614 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli O157:H7 # 1 696 1 696 696 1312 100.0 0 MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAASVSVISQEELQSSQYH DLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDGVRQGGSSDVTPNGFSAMN TGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLNLQESNKW GNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSLSDTAATRIPYPTESQNYNLGAR LDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGYDRTLRYERNKISAGYDHTFTFGTW KSYLNWNETENKGRELVRSVLKRDKWGLAGQPRELKESNLILNSLLLTPLGESHLVTVGG EFQSSSMKDGVVLASTGETFRQKSWSVFAEDEWHLTDALALTAGSRYEHHEQFGGHFSPR AYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLLGNPDLKPEESVSYEA GVYYDNPAGLNANVTGFMTDFSNKIVSYSINDNTNSYVNSGKARLHGVEFAGTLPLWSED VTLSLNYTWTRSEQRDGDNKGAPLSYTPEHMVNAKLNWQITEEVASWLGARYRGKTPRFT QNYSSLSAVQKKVYDEKGEYLKAWTVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYS AGKSTLYAGDYFQTGSSTTGYVIPERNYWMSLNYQF >gi|223713573|gb|ACDM01000025.1| GENE 10 9595 - 9792 123 65 aa, chain + ## HITS:1 COG:no KEGG:ECO111_1262 NR:ns ## KEGG: ECO111_1262 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 65 10 74 74 114 100.0 1e-24 MRLAGQVLITLITWRSHVSGSIPLSFAATDQAVHHCRTIARHLKVRSRQQEGIILSRHFS RGPVR Prediction of potential genes in microbial genomes Time: Mon May 16 18:53:39 2011 Seq name: gi|223713572|gb|ACDM01000026.1| Escherichia sp. 4_1_40B cont1.26, whole genome shotgun sequence Length of sequence - 1612 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 39 - 98 3.2 1 1 Op 1 6/0.000 + CDS 164 - 589 242 ## COG2963 Transposase and inactivated derivatives 2 1 Op 2 5/0.000 + CDS 586 - 936 326 ## COG3436 Transposase and inactivated derivatives 3 1 Op 3 . + CDS 967 - 1612 477 ## COG3436 Transposase and inactivated derivatives Predicted protein(s) >gi|223713572|gb|ACDM01000026.1| GENE 1 164 - 589 242 141 aa, chain + ## HITS:1 COG:ECs1393 KEGG:ns NR:ns ## COG: ECs1393 COG2963 # Protein_GI_number: 15830647 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 241 90.0 3e-64 MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRV SRRLPVTTSSDTGVELLPVEITPDEQKKPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMT LENPSPELLTVLIRELSGRGR >gi|223713572|gb|ACDM01000026.1| GENE 2 586 - 936 326 116 aa, chain + ## HITS:1 COG:ECs3868 KEGG:ns NR:ns ## COG: ECs3868 COG3436 # Protein_GI_number: 15833122 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 116 1 116 116 225 96.0 1e-59 MISLPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLNDNPFSGHLFIFRGRRGDTVKILWAD ADGLCLFTKRLKEGQFIWPAVRDGKVSITRSQLVMLLDKLDWRQPKTSRLNSLTML >gi|223713572|gb|ACDM01000026.1| GENE 3 967 - 1612 477 215 aa, chain + ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 215 1 215 537 332 93.0 4e-91 MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSVLARAEEKIEEDEREIEH LRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSRHR RPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALKVIRTERVKKACTK CDCIVEAPAPSRPIERGIAGPELLARVLTGKYCEH Prediction of potential genes in microbial genomes Time: Mon May 16 18:53:57 2011 Seq name: gi|223713571|gb|ACDM01000027.1| Escherichia sp. 4_1_40B cont1.27, whole genome shotgun sequence Length of sequence - 59828 bp Number of predicted genes - 62, with homology - 58 Number of transcription units - 34, operones - 17 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.222 + CDS 1 - 150 60 ## COG3436 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 202 - 549 225 ## COG3436 Transposase and inactivated derivatives - Term 824 - 849 -0.5 3 2 Tu 1 . - CDS 866 - 4957 2090 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 5034 - 5093 5.1 4 3 Op 1 23/0.000 + CDS 5554 - 5919 161 ## COG2963 Transposase and inactivated derivatives 5 3 Op 2 . + CDS 5943 - 6680 123 ## COG2801 Transposase and inactivated derivatives + Term 6894 - 6933 4.1 - Term 6489 - 6534 -0.7 6 4 Op 1 7/0.000 - CDS 6775 - 6990 201 ## COG1662 Transposase and inactivated derivatives, IS1 family 7 4 Op 2 . - CDS 7197 - 7469 102 ## COG3677 Transposase and inactivated derivatives - Prom 7663 - 7722 2.7 - Term 8178 - 8208 5.0 8 5 Tu 1 . - CDS 8290 - 8535 106 ## COG1943 Transposase and inactivated derivatives 9 6 Op 1 23/0.000 - CDS 9224 - 9421 90 ## COG2963 Transposase and inactivated derivatives 10 6 Op 2 11/0.000 - CDS 9469 - 9681 98 ## COG2801 Transposase and inactivated derivatives 11 6 Op 3 . - CDS 9709 - 10065 120 ## COG2801 Transposase and inactivated derivatives 12 7 Tu 1 . - CDS 10167 - 10331 57 ## - Prom 10460 - 10519 6.3 13 8 Op 1 6/0.000 + CDS 10881 - 11285 200 ## COG2963 Transposase and inactivated derivatives 14 8 Op 2 . + CDS 11282 - 11545 161 ## COG3436 Transposase and inactivated derivatives + Term 11631 - 11660 -0.8 15 9 Tu 1 . - CDS 11596 - 11757 86 ## 16 10 Op 1 . + CDS 11710 - 11922 166 ## COG3436 Transposase and inactivated derivatives 17 10 Op 2 . + CDS 11989 - 12177 125 ## ECED1_0286 hypothetical protein 18 11 Tu 1 . - CDS 12195 - 14555 608 ## COG4951 Uncharacterized protein conserved in bacteria 19 12 Op 1 . - CDS 14710 - 15273 317 ## E2348C_1075 hypothetical protein - Term 15329 - 15353 -1.0 20 12 Op 2 . - CDS 15355 - 15525 67 ## - Prom 15686 - 15745 2.2 - Term 16552 - 16615 24.2 21 13 Tu 1 . - CDS 16649 - 18484 592 ## E2348C_1074 hypothetical protein 22 14 Op 1 . + CDS 18585 - 18872 152 ## COG3311 Predicted transcriptional regulator 23 14 Op 2 . + CDS 18847 - 20373 226 ## E2348C_1073 hypothetical protein + Term 20441 - 20496 11.0 - Term 20489 - 20521 -1.0 24 15 Tu 1 . - CDS 20543 - 21760 321 ## COG0582 Integrase - Prom 21845 - 21904 5.4 - Term 22213 - 22252 8.4 25 16 Op 1 19/0.000 - CDS 22278 - 24554 1361 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 26 16 Op 2 . - CDS 24585 - 24905 325 ## COG2127 Uncharacterized conserved protein - Prom 24971 - 25030 1.8 27 17 Tu 1 . - CDS 25075 - 25317 64 ## - Prom 25366 - 25425 2.2 + Prom 25081 - 25140 4.6 28 18 Tu 1 . + CDS 25228 - 25452 208 ## COG1278 Cold shock proteins + Term 25489 - 25522 4.1 - Term 25470 - 25515 7.1 29 19 Op 1 13/0.000 - CDS 25525 - 27471 368 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 30 19 Op 2 . - CDS 27468 - 28583 1233 ## COG0845 Membrane-fusion protein + Prom 28536 - 28595 3.9 31 20 Tu 1 . + CDS 28740 - 29690 658 ## COG2990 Uncharacterized protein conserved in bacteria + Term 29807 - 29848 0.2 - Term 29658 - 29686 -0.6 32 21 Tu 1 . - CDS 29687 - 31345 1026 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family - Prom 31516 - 31575 7.5 + Prom 31469 - 31528 8.2 33 22 Tu 1 . + CDS 31771 - 32466 783 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 32467 - 32520 9.6 + Prom 32758 - 32817 3.4 34 23 Tu 1 . + CDS 32961 - 33860 898 ## COG2431 Predicted membrane protein + Prom 33912 - 33971 4.8 35 24 Op 1 2/0.556 + CDS 34004 - 35656 1950 ## COG1151 6Fe-6S prismane cluster-containing protein 36 24 Op 2 5/0.222 + CDS 35668 - 36636 938 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 + Term 36646 - 36685 5.0 + Prom 36682 - 36741 5.3 37 25 Op 1 5/0.222 + CDS 36769 - 38487 1752 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 38 25 Op 2 4/0.222 + CDS 38524 - 39525 1183 ## COG2008 Threonine aldolase 39 25 Op 3 4/0.222 + CDS 39536 - 40966 1217 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Prom 40978 - 41037 3.0 40 25 Op 4 . + CDS 41065 - 42078 936 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Term 41901 - 41942 1.0 41 26 Op 1 4/0.222 - CDS 42075 - 42905 784 ## COG3023 Negative regulator of beta-lactamase expression 42 26 Op 2 . - CDS 42902 - 43225 522 ## COG0393 Uncharacterized conserved protein - Prom 43301 - 43360 6.2 + Prom 43251 - 43310 4.1 43 27 Tu 1 . + CDS 43351 - 43866 323 ## B21_00876 hypothetical protein + Term 43897 - 43937 5.6 + Prom 43882 - 43941 2.0 44 28 Op 1 7/0.000 + CDS 44012 - 44812 246 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 45 28 Op 2 12/0.000 + CDS 44830 - 45561 1116 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 46 28 Op 3 12/0.000 + CDS 45568 - 46284 847 ## COG4215 ABC-type arginine transport system, permease component 47 28 Op 4 4/0.222 + CDS 46284 - 46952 941 ## COG4160 ABC-type arginine/histidine transport system, permease component + Term 47092 - 47136 9.1 + Prom 47117 - 47176 7.3 48 29 Tu 1 . + CDS 47243 - 47974 913 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 48152 - 48183 2.5 - Term 48013 - 48049 2.4 49 30 Op 1 . - CDS 48173 - 49300 1076 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 50 30 Op 2 . - CDS 49341 - 49829 376 ## LF82_2664 inner membrane protein YbjO 51 30 Op 3 36/0.000 - CDS 49889 - 50734 755 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 52 30 Op 4 30/0.000 - CDS 50731 - 51684 964 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 53 30 Op 5 13/0.000 - CDS 51694 - 52827 1472 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 54 30 Op 6 . - CDS 52922 - 54034 1175 ## COG0687 Spermidine/putrescine-binding periplasmic protein - Prom 54202 - 54261 6.9 - Term 54323 - 54377 6.1 55 31 Op 1 . - CDS 54385 - 54861 445 ## EcE24377A_0925 TPR repeat-containing protein - Prom 54888 - 54947 1.6 56 31 Op 2 4/0.222 - CDS 54949 - 55851 1507 ## PROTEIN SUPPORTED gi|15830186|ref|NP_308959.1| ribosomal protein S6 modification protein 57 31 Op 3 . - CDS 55912 - 56634 719 ## COG0778 Nitroreductase 58 31 Op 4 . - CDS 56618 - 56905 249 ## SSON_0835 hypothetical protein - Prom 57012 - 57071 4.8 + Prom 56982 - 57041 2.2 59 32 Tu 1 . + CDS 57065 - 57322 483 ## COG0695 Glutaredoxin and related proteins + Term 57334 - 57362 1.4 60 33 Tu 1 . - CDS 57352 - 57648 103 ## ECIAI39_0827 conserved hypothetical protein; putative inner membrane protein + Prom 57822 - 57881 5.5 61 34 Op 1 . + CDS 57999 - 58277 276 ## COG2985 Predicted permease 62 34 Op 2 . + CDS 58277 - 59683 1533 ## COG2985 Predicted permease Predicted protein(s) >gi|223713571|gb|ACDM01000027.1| GENE 1 1 - 150 60 49 aa, chain + ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 49 489 537 537 108 97.0 3e-24 ALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVGELLPWNVVLTNK >gi|223713571|gb|ACDM01000027.1| GENE 2 202 - 549 225 115 aa, chain + ## HITS:1 COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 115 398 512 512 223 89.0 5e-59 MKTLSRHSELAKAFAYALNQWPALTYYANDGWAEADNNIAENALRMVSLGRKNYLFFGSD HGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE >gi|223713571|gb|ACDM01000027.1| GENE 3 866 - 4957 2090 1363 aa, chain - ## HITS:1 COG:NMB0700 KEGG:ns NR:ns ## COG: NMB0700 COG3468 # Protein_GI_number: 15676598 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 29 760 2 806 1815 267 32.0 1e-70 MNKIYALKYSSLTGGLIAVSELSKKVTGKTGRRLMTVSLVLSVTLSALPGKASTVSAEIP YQTFRDFAENKGVFTPGVTGIEINDNNGNKVGVLDVPMLDFSSLSRDGHTTLIHPGYVVS AKHSGLQSVSSATFGYDQIYKIVDNNLAGIDFSAPRLNKLVTEVIPADIQGKDKFNNNRY TAFYRAGVGSQYIRYANGTDKLLQAYTPDKAYLTGGTVGKPYYTHYNGMKMISANPGNTF DKNQGPLASYGQIGDSGSPLYAWDNIDKKWVLTGVTLHNYGVKGARNDWLLIPHDFISQK LQDDLKPIIVASPEENILRWEFDRSRGTGTLSQGEKIFSMTGSVNGNANTGNNLVFSGNE GKIELVSSVEQGAGYLQFDKDYTVLTNNNSTWTGAGIIVGDEANVKWGVNGIAGDYLHKV GSGTLTVNGHGENKGGLKVGDGVVVLEQQPDANQKQQAFSHINIASGRATVKLNGANQVD ADNISWGYRGGKLDLNGYDFTFSRLQAADYGAEISNDNQTDKSIVTLSLSPLKAEEINVV VNNINIMGGAGKPGDLYYTTFDGNYYLLKSNRYGSALFGALNNQSEWQRLGKNKEKAIGL YTQMKMQESDLLSYIYHGKITGNTSVEIPKLAGNDILTLDGSVSISGDMSKQDGALIFQG HPVIHAGQTVSASQSDWENREFSLNNLNLNNADFSLSRNAFMNGNIRAVNQSTVIIGGDT VFTDKNDGTGNDVISVEGKSAAAGTSSYTGHITLEQKSALDIRDNFRGGVTSEDSHINVS SSSVLFSDASSFINSSLNIHKGGALTAQGGLFTSGSIDIGDASLLLTGTPVNSDDAAFLP TINMADGGFKLMSDSSVLKARDQASVVGDIISDKQATISFGTESGKEGILSEKASRGLAV GLLSGFNTAYRGAIHAPSASATMNNTWWQLTGDSSLRSLKNTGSMTYFTGSAANKAFHTL TVDELTTNGTAYAMRTDLKNADKLVVNQKLSGKDNILLVDFLNKPTGEKLDIELVSAPGN SSKDVFKGSEQAIGFSNVTPVITAIDAGDKTTWNLTGYRMAENPAATQSASGLASVGYKS FLSEVNNLNKRMGDLRDINGEAGAWARIMSGTGSAGGGFSDNHTHVQVGVDKKHELDGLD LFTGFTVTHTDSSASADAFKGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFA GLGTRNYSTHSWYAGAEAGYRCHVTEDTWIEPQAELVYGAVSGKQFAWKDQGMHLSMKDR DYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSR MLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF >gi|223713571|gb|ACDM01000027.1| GENE 4 5554 - 5919 161 121 aa, chain + ## HITS:1 COG:yi21_g3 KEGG:ns NR:ns ## COG: yi21_g3 COG2963 # Protein_GI_number: 16129938 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 121 16 136 136 207 98.0 4e-54 MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTA VAAGEQVVPASELAAAMKQIKELQRLLGKKTMENEILKEAVEYGRAKKWIAHAPLLPGDG E >gi|223713571|gb|ACDM01000027.1| GENE 5 5943 - 6680 123 245 aa, chain + ## HITS:1 COG:yi22 KEGG:ns NR:ns ## COG: yi22 COG2801 # Protein_GI_number: 16132094 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 243 23 265 301 468 94.0 1e-132 MSRAQLHVILRRTDDWKDGRRSRHSDDTDVLLRIYHVIGELPTYGYRRVWALLRRQAELD GMPAINAKRVYRIMRQNALLLERKTAVPPSKRAHTGKVAVKESNQRWCSDGFEFRCDNGE KLRVTFALDCCDREALHWAVTTGGFDSETVQDVMLGAVERRFRNELPASPVEWLTDNGSC YRANETRQFARMLGLEPKNTAVRSPESNGITESFVKTIKRDYISIMPKPDGLTAAKNLTE AFELL >gi|223713571|gb|ACDM01000027.1| GENE 6 6775 - 6990 201 71 aa, chain - ## HITS:1 COG:ECs1301 KEGG:ns NR:ns ## COG: ECs1301 COG1662 # Protein_GI_number: 15830555 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS1 family # Organism: Escherichia coli O157:H7 # 1 70 61 130 145 86 62.0 9e-18 MLTSDDWGSYGWVVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHEKV IGAFIEKHMFY >gi|223713571|gb|ACDM01000027.1| GENE 7 7197 - 7469 102 90 aa, chain - ## HITS:1 COG:YPO0981 KEGG:ns NR:ns ## COG: YPO0981 COG3677 # Protein_GI_number: 16121285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 86 1 86 87 131 75.0 3e-31 MASVNIHCPRCQSAQVYRHGQSPKGHDRFRCRDCHRVFQLTYTYQARKPGMKELITEMAF NGAGVRDTARTLKIGINTVIRTLKNSRQSE >gi|223713571|gb|ACDM01000027.1| GENE 8 8290 - 8535 106 81 aa, chain - ## HITS:1 COG:YPO2985 KEGG:ns NR:ns ## COG: YPO2985 COG1943 # Protein_GI_number: 16123166 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 81 72 152 152 159 93.0 9e-40 MSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNRAFWCRGDYVDTVDKNTAKIQDYIKHQLE EDKMGEQLSIPYPGSPFTGRK >gi|223713571|gb|ACDM01000027.1| GENE 9 9224 - 9421 90 65 aa, chain - ## HITS:1 COG:ECs1337 KEGG:ns NR:ns ## COG: ECs1337 COG2963 # Protein_GI_number: 15830591 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 62 1 62 141 105 87.0 1e-23 MKQKTLSAEPRRSFSNNFKLQMVKLALQPGASVARIAREHDINVNLLFKWLRLWQNEGRV SRGSG >gi|223713571|gb|ACDM01000027.1| GENE 10 9469 - 9681 98 70 aa, chain - ## HITS:1 COG:RSc2265 KEGG:ns NR:ns ## COG: RSc2265 COG2801 # Protein_GI_number: 17546984 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 67 199 265 269 91 62.0 3e-19 MSRRGNCLDNAAMESFFSTLKSECYYLNKNNNLHHLKQDIIDYIEYYNHHCIKEKLDGMS PVQYRLKHFS >gi|223713571|gb|ACDM01000027.1| GENE 11 9709 - 10065 120 118 aa, chain - ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 117 83 199 283 155 60.0 2e-38 MKELGISSLIRVKKYRSYKGEQGRICDNLLKRNFDAKRPNEKWVTDVTEFKVNGKKLYLS PIMDLYNGEIISYNLATRPQPSMVQTMLTDALKQLSKDEHPILHSDQGWQYQMSRWQR >gi|223713571|gb|ACDM01000027.1| GENE 12 10167 - 10331 57 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLNVQEKVSIVNELRQEWSLSRLLIVSGLSGVHFTIMSDGLLLLTGISLPERLC >gi|223713571|gb|ACDM01000027.1| GENE 13 10881 - 11285 200 134 aa, chain + ## HITS:1 COG:ECs0328 KEGG:ns NR:ns ## COG: ECs0328 COG2963 # Protein_GI_number: 15829582 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 8 134 17 133 133 122 55.0 1e-28 MKSLTTVRKKSPNYPVEFKIKMVELSHRPDISVAQLAREHEINDNLLFKWCQYWREGKLR PPSTTENSVPELLPITLDTEDVVPTTSSRSQPVAAAAPESLNISCEVTFRHGSLRLNGTI SENILNLLIRELKR >gi|223713571|gb|ACDM01000027.1| GENE 14 11282 - 11545 161 87 aa, chain + ## HITS:1 COG:Z2127 KEGG:ns NR:ns ## COG: Z2127 COG3436 # Protein_GI_number: 15801566 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 85 72 156 186 167 96.0 5e-42 MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVFIFRGRNGSQVKLLWST GDGLCLLTKRLERGRFAWPSARDDKGD >gi|223713571|gb|ACDM01000027.1| GENE 15 11596 - 11757 86 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRTEEQVIFAAQTDHPQRILSYVVISLGPAVVSIVSQRWPLVQYVRERFRQF >gi|223713571|gb|ACDM01000027.1| GENE 16 11710 - 11922 166 70 aa, chain + ## HITS:1 COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 2 70 444 512 512 136 86.0 9e-33 MVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGEL LPWRVALPTE >gi|223713571|gb|ACDM01000027.1| GENE 17 11989 - 12177 125 62 aa, chain + ## HITS:1 COG:no KEGG:ECED1_0286 NR:ns ## KEGG: ECED1_0286 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 62 65 126 126 131 98.0 9e-30 MANYQLNEQLLEGCRPWIVIFDDVLTAGSHFKAMKSLILQHIPEACILGLFVARTTRGAQ II >gi|223713571|gb|ACDM01000027.1| GENE 18 12195 - 14555 608 786 aa, chain - ## HITS:1 COG:ECs1305_1 KEGG:ns NR:ns ## COG: ECs1305_1 COG4951 # Protein_GI_number: 15830559 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 392 1 392 392 802 96.0 0 MVHKSDSDELAALRAENARLVSLLEAHGIEWRRKPPISVQRVSVLSTNEKVALFRRLFRG RDDVWALRWESKTSGKSGYSPACANEWQARICGKPRIKCGDCAHRQLIPVSDLVIYYHLA GTHTAGMYPLLEDDSCYFLAVDFDEAEWQKDASAFMRSCDELGVPAALEISRSRQGAHVW IFFASRVSAREARRLGTAIISYTCNRTRQLRLGSYDRLFPNQDTMPKGGFGNLIALPLQK RPRESGGSVFVDMNFQPYSDQWAFLASVIPMNVQNIEPTILRATGSIHPLDVNFINEEDL GTPWEGKKSSGNRLNISIAEPLKITLANQIYFEKAQLPQVLINRLIRLAAFPNPEFYKAQ AMRMSVWNKPRVIGCAENYPQHIALPQGCLDSVLSFLRDNNIAAELIDKRFVGTECNAVF MGNLRAEQEEAVSALLRYDTGVLCAPTAFGKTVTAAAVIARRKVNTLILVHRTELLKQWQ ERLEVFLQVGDNIGIIGGGKHKPCGNIDIAVVQSISRHGEVEPLVRNYGQIIVDECHHIG AVSFSAILKETNARYLLGLTATPIRRDGLHPIIFMYCGAIRHTAVRPKESPHNLEVLTRS RFTSGHLPSDARIQDIFREIALDHDRTVAIAEEAMKAFGQGRKVLVLTERTDHLDEIASV MNSLKLSPFILHGRLSKKKRAMLISGLNALPPDSPRILLSTGRLIGEGFDHPPLDTLILA MPVSWKGTLQQYAGRLHREHTGKSDVRIIDFVDTAYPVLLRMWDKRQRGYKAMGYRIVAD GEGLSF >gi|223713571|gb|ACDM01000027.1| GENE 19 14710 - 15273 317 187 aa, chain - ## HITS:1 COG:no KEGG:E2348C_1075 NR:ns ## KEGG: E2348C_1075 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 187 1 187 187 374 98.0 1e-103 MYNANPNYKMDFMILKDVNEHMDGMFQRFSKLLPFRIDFAYRKDTPSFGHSCKHSMCMEI YRLLCETQTMLAGYYWVMEYTPDKGLHIHFVGYLDGQRHKNSYQISRQLGDIWRRITEGE GYFHLCRAKDKYPVRIDHVMHYSDKSAVDNLRYALSYLAKQDQKEHGIILGRSRLPEKSN RGRPRHN >gi|223713571|gb|ACDM01000027.1| GENE 20 15355 - 15525 67 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPETQFYEVCFSIVIRTGSQFKRVSLYSEVLPHHSNAVIQNSFIRLSVLLVYFVY >gi|223713571|gb|ACDM01000027.1| GENE 21 16649 - 18484 592 611 aa, chain - ## HITS:1 COG:no KEGG:E2348C_1074 NR:ns ## KEGG: E2348C_1074 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 611 1 611 611 1178 99.0 0 MRTFTNLLYDICTVLGLFREGENPAHKRKSTNFEMHQKFWDQRYNAISRIIDAEGVYSQE QRRIIYARYEHFYYMMNSYPVHSTLKSEFLRSYCLRTFGVIFLVVDIYNTYRPENDSAFY YHIYNFLQKSYCPCLDHSDTESDEAAVKRYLREYLAELGFNKEDFHENGKLYALGKYTGT IRRDNGKSKSLMKQYIMSIKNEYKKDYREKKLDKDELEKLLRNIDKFYNAFYSLSVLLDI QRKTKILQSLAYYLRVLVRKGLWTHGLYGYAEQYLYDFTSLDTTPYAKKLLEMFYKFENS AEGTLARYNVSLDDKSQEYIARLKDLVFNINEKNGCDDAYLKMIISHFGQLQNEAVHVTS CYGTLAVYICLIRKNKINDVLHHYDDMERKGLFAELPSGYIRGALSLLRTALEVKVNRKN IKYGSLFYWLDHVKAHQDAFIESIPLIDPVYKEGEIQYDANNFTLMRVIKMYNCMLEKIS TKPYIAPPYITGLLDDVEKVLDKINILIDKEYVYDGKTLAEVIIENKVLSSRERKDTMIG LFTGSKKYTLLQCVEKLGVLVHYVKSPVDEIKNVMMLYGDKAENRNRRRMIYDALTIICE DDNRAKHPDLS >gi|223713571|gb|ACDM01000027.1| GENE 22 18585 - 18872 152 95 aa, chain + ## HITS:1 COG:ECs1302 KEGG:ns NR:ns ## COG: ECs1302 COG3311 # Protein_GI_number: 15830556 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 77 1 77 98 113 74.0 9e-26 MSNQTGQLDTPSRILRMAELTRLLGISRSTIYVKINPASKYHDPTFPKPIRLGSASVGWR ASAIDEWLTLHTAPAWSEPENKQKELNDDDKTITP >gi|223713571|gb|ACDM01000027.1| GENE 23 18847 - 20373 226 508 aa, chain + ## HITS:1 COG:no KEGG:E2348C_1073 NR:ns ## KEGG: E2348C_1073 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 508 2 509 509 943 98.0 0 MTTKLSLPELDITKLPDRSQALLNEMHEETGISREILLSVMLTVKAASVQDTHEVELSGG QRTSLQIFMCLSSASGSGKTSACAKLIAPVHETEEELHQAYIDDKKNYDRMMEMWTTDKK ILERRYKKEMERSPENAAAARAALEKCIANKPVPPTQQVLIVNDATPEGIALKLSQSPSL LLLSDEGGTILDKRFERKSALYNTLWSGQPVNVERASRPGFRLNDVRLTILILTQPVIFN KFFTLTGDQIRGNGFLARLLFCEPGAIKIMTTEPHTAIPVVTQQCASCFRKKSFGSQIRD SLRASRERRAKSKERICMTLSNAASRALERFHKENMDTVRQNPHMGTFEDIIVRKREQVV RIAALLELEKDPDSTVITLESTNSAIYLIEFYFKHLIYKLESLREISPAEKLDKWLQKRI ITTAGYIFQKSYILQYAPYALRKKCVLDEALDILAEQRKIRIDDNLVVYIGNTITPSELA KKLNIPAFDAGVFICDHQNILKYHRNRL >gi|223713571|gb|ACDM01000027.1| GENE 24 20543 - 21760 321 405 aa, chain - ## HITS:1 COG:ECs1299 KEGG:ns NR:ns ## COG: ECs1299 COG0582 # Protein_GI_number: 15830553 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1 397 1 397 400 766 97.0 0 MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY PEVSIAEAARAARIMREQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW AHGFCVANPVDVVGHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHILENIRGLHDEL VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA >gi|223713571|gb|ACDM01000027.1| GENE 25 22278 - 24554 1361 758 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 10 741 14 806 815 528 38 1e-149 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEA FIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQA AYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLA RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING LKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKT VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAG LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGY VGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL LFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH >gi|223713571|gb|ACDM01000027.1| GENE 26 24585 - 24905 325 106 aa, chain - ## HITS:1 COG:ECs0967 KEGG:ns NR:ns ## COG: ECs0967 COG2127 # Protein_GI_number: 15830221 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 106 1 106 106 209 100.0 8e-55 MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA >gi|223713571|gb|ACDM01000027.1| GENE 27 25075 - 25317 64 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSENIFAAAFRADETKPFGIVEPLNSTLFHASTSFANLIQVRWNKPGSERGLFKTSPTLE IQFRELGRAVKHLTGDKGQV >gi|223713571|gb|ACDM01000027.1| GENE 28 25228 - 25452 208 74 aa, chain + ## HITS:1 COG:ECs0966 KEGG:ns NR:ns ## COG: ECs0966 COG1278 # Protein_GI_number: 15830220 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 74 1 74 74 145 100.0 2e-35 MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH ASVIVPVEVEAAVA >gi|223713571|gb|ACDM01000027.1| GENE 29 25525 - 27471 368 648 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 256 648 7 413 413 146 27 3e-34 MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKA TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQ RLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVTGGTEPV VNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMV LADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRY NNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVV GEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGF DSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGV MNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQL FLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE >gi|223713571|gb|ACDM01000027.1| GENE 30 27468 - 28583 1233 371 aa, chain - ## HITS:1 COG:ybjY KEGG:ns NR:ns ## COG: ybjY COG0845 # Protein_GI_number: 16128846 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 371 10 380 380 643 99.0 0 MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA ELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPG QKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV VIGEAKPGAAQ >gi|223713571|gb|ACDM01000027.1| GENE 31 28740 - 29690 658 316 aa, chain + ## HITS:1 COG:ybjX KEGG:ns NR:ns ## COG: ybjX COG2990 # Protein_GI_number: 16128845 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 316 15 330 330 605 100.0 1e-173 MSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMN ELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYL NTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKR TMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHI YRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRY EMLDAIQPQMATMFRG >gi|223713571|gb|ACDM01000027.1| GENE 32 29687 - 31345 1026 552 aa, chain - ## HITS:1 COG:ybjD KEGG:ns NR:ns ## COG: ybjD COG3593 # Protein_GI_number: 16128844 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Escherichia coli K12 # 1 552 1 552 552 1072 100.0 0 MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDF WFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAE DGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE VTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNE QRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLH PIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTED SRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQ GFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMF SRVLWLARGRAD >gi|223713571|gb|ACDM01000027.1| GENE 33 31771 - 32466 783 231 aa, chain + ## HITS:1 COG:aqpZ KEGG:ns NR:ns ## COG: aqpZ COG0580 # Protein_GI_number: 16128843 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Escherichia coli K12 # 1 231 1 231 231 353 100.0 1e-97 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG YGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPV TNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD >gi|223713571|gb|ACDM01000027.1| GENE 34 32961 - 33860 898 299 aa, chain + ## HITS:1 COG:ybjE KEGG:ns NR:ns ## COG: ybjE COG2431 # Protein_GI_number: 16128842 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 299 17 315 315 479 100.0 1e-135 MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLA ILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFA IGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLI GGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLI PGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA >gi|223713571|gb|ACDM01000027.1| GENE 35 34004 - 35656 1950 550 aa, chain + ## HITS:1 COG:ybjW KEGG:ns NR:ns ## COG: ybjW COG1151 # Protein_GI_number: 16128841 # Func_class: C Energy production and conversion # Function: 6Fe-6S prismane cluster-containing protein # Organism: Escherichia coli K12 # 1 550 3 552 552 1160 100.0 0 MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINH DVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQL VSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIY AQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATA GKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQ QVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMA GFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFAT SVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVN DLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTV EEDMKQLLSA >gi|223713571|gb|ACDM01000027.1| GENE 36 35668 - 36636 938 322 aa, chain + ## HITS:1 COG:ybjV KEGG:ns NR:ns ## COG: ybjV COG1018 # Protein_GI_number: 16128840 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 322 1 322 322 663 100.0 0 MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYALVSVRNSAETLRAYTIS STPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKFLLLAAG CGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEWRNYPVTLVAENNVTEGFIAG RLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALGVTRFFKEKFFTPVAEAATSGLK FTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTD AEIAEGYVLACSCHPQGDLVLA >gi|223713571|gb|ACDM01000027.1| GENE 37 36769 - 38487 1752 572 aa, chain + ## HITS:1 COG:poxB KEGG:ns NR:ns ## COG: poxB COG0028 # Protein_GI_number: 16128839 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1 572 1 572 572 1149 100.0 0 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAE AQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL FRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAP QPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKEHV EYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGA HSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQ YLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQA TEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGT ELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKL EQAKGFSLYMLRAIISGRGDEVIELAKTNWLR >gi|223713571|gb|ACDM01000027.1| GENE 38 38524 - 39525 1183 333 aa, chain + ## HITS:1 COG:ybjU KEGG:ns NR:ns ## COG: ybjU COG2008 # Protein_GI_number: 16128838 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Escherichia coli K12 # 1 333 1 333 333 664 100.0 0 MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQ ANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKI KPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVVAYGCE LKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIY ALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTNMLFVRVGEENAAALGEYMKARNVL INASPIVRLVTHLDVSREQLAEVAAHWRAFLAR >gi|223713571|gb|ACDM01000027.1| GENE 39 39536 - 40966 1217 476 aa, chain + ## HITS:1 COG:ybjT KEGG:ns NR:ns ## COG: ybjT COG0702 # Protein_GI_number: 16128837 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 476 11 486 486 958 99.0 0 MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQLANVSCHKVDLSWPDNL PALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVPVKQLIFLSSLQAPPHEQS DHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTT PIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQFEHFMAVSGKRRWLIPIPLPTR WISVWFLNVITSVPPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKEEEK LVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKTSASLAALWQVVNQIGGKERYFFGNIL WQTRALMDRAIGHKLAKGRPEREYLQTGDAVDSWKVIVVEPEKQLTLLFGMKAPGLGRLC FSLEDKGDYRTIDVRAFWHPHGMPGLFYWLLMIPAHLFIFRGMAKQIARLAEQSTD >gi|223713571|gb|ACDM01000027.1| GENE 40 41065 - 42078 936 337 aa, chain + ## HITS:1 COG:ybjS KEGG:ns NR:ns ## COG: ybjS COG0451 # Protein_GI_number: 16128836 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 337 13 349 349 707 100.0 0 MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQA KVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFD YHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFI PRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHR TLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFT LDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR >gi|223713571|gb|ACDM01000027.1| GENE 41 42075 - 42905 784 276 aa, chain - ## HITS:1 COG:ECs0953 KEGG:ns NR:ns ## COG: ECs0953 COG3023 # Protein_GI_number: 15830207 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Escherichia coli O157:H7 # 1 276 1 276 276 538 98.0 1e-153 MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPL FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD >gi|223713571|gb|ACDM01000027.1| GENE 42 42902 - 43225 522 107 aa, chain - ## HITS:1 COG:ECs0952 KEGG:ns NR:ns ## COG: ECs0952 COG0393 # Protein_GI_number: 15830206 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 107 1 107 107 187 100.0 4e-48 MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREI AFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR >gi|223713571|gb|ACDM01000027.1| GENE 43 43351 - 43866 323 171 aa, chain + ## HITS:1 COG:no KEGG:B21_00876 NR:ns ## KEGG: B21_00876 # Name: ybjP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 171 1 171 171 342 100.0 4e-93 MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDI TALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIP LRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR >gi|223713571|gb|ACDM01000027.1| GENE 44 44012 - 44812 246 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 23 244 1 215 305 99 29 4e-20 MHNYSVKGTIFDLNSYQTASIRVSMSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGP SGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPH LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARAL MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMEN GHIVEQGDASCFTEPQTEAFKNYLSH >gi|223713571|gb|ACDM01000027.1| GENE 45 44830 - 45561 1116 243 aa, chain + ## HITS:1 COG:artI KEGG:ns NR:ns ## COG: artI COG0834 # Protein_GI_number: 16128831 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1 243 1 243 243 475 100.0 1e-134 MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIVGFDVDLAQALCKEIDA TCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTS VDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQNGRIDGVFGDTAVVTE WLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQKLNTALEKVKKDGTYETIYNKW FQK >gi|223713571|gb|ACDM01000027.1| GENE 46 45568 - 46284 847 238 aa, chain + ## HITS:1 COG:artQ KEGG:ns NR:ns ## COG: artQ COG4215 # Protein_GI_number: 16128830 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Escherichia coli K12 # 1 238 1 238 238 426 100.0 1e-119 MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWAGSALVTILRGLPEI LVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVSPFLCGVIALSLLYAAYAS QTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVS LISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLLSQYILKRIDLRATRFERRPS >gi|223713571|gb|ACDM01000027.1| GENE 47 46284 - 46952 941 222 aa, chain + ## HITS:1 COG:ECs0944 KEGG:ns NR:ns ## COG: ECs0944 COG4160 # Protein_GI_number: 15830198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 372 100.0 1e-103 MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVLVWLVRGYITLFTGTPL LVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNSAAYTTQLFYGAIRAIPEG QWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFKSTSLAYTITLMEVMGYSQLL YGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAFERRN >gi|223713571|gb|ACDM01000027.1| GENE 48 47243 - 47974 913 243 aa, chain + ## HITS:1 COG:artJ KEGG:ns NR:ns ## COG: artJ COG0834 # Protein_GI_number: 16128828 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 1 243 1 243 243 482 100.0 1e-136 MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDLAKALCKQMQA ECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTTPYYENSAVVIAKKDTYKT FADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAFIDLKNGRIDGVFGDTAVVNE WLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQW FPQ >gi|223713571|gb|ACDM01000027.1| GENE 49 48173 - 49300 1076 375 aa, chain - ## HITS:1 COG:ybjF KEGG:ns NR:ns ## COG: ybjF COG2265 # Protein_GI_number: 16128827 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1 375 1 375 375 767 100.0 0 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF PHTAHYEVLTLLVKQ >gi|223713571|gb|ACDM01000027.1| GENE 50 49341 - 49829 376 162 aa, chain - ## HITS:1 COG:no KEGG:LF82_2664 NR:ns ## KEGG: LF82_2664 # Name: ybjO # Def: inner membrane protein YbjO # Organism: E.coli_LF82 # Pathway: not_defined # 1 162 1 162 162 290 100.0 1e-77 MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIFNTLGVRGIGEFIHRSV QTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQITAASYLWAASLGYGYPEL FSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQLQ >gi|223713571|gb|ACDM01000027.1| GENE 51 49889 - 50734 755 281 aa, chain - ## HITS:1 COG:STM0880 KEGG:ns NR:ns ## COG: STM0880 COG1177 # Protein_GI_number: 16764242 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Salmonella typhimurium LT2 # 1 281 1 281 281 452 94.0 1e-127 MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELLRDDA MMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGFAFMITAPLVMPDVITGLS LLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGAT PLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP EINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQRARRG >gi|223713571|gb|ACDM01000027.1| GENE 52 50731 - 51684 964 317 aa, chain - ## HITS:1 COG:potH KEGG:ns NR:ns ## COG: potH COG1176 # Protein_GI_number: 16128824 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli K12 # 1 317 1 317 317 553 100.0 1e-157 MSTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLFLLPFLIVFKISLAEMA RAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTFCCLLIGYPL AWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTI LHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAALDLGARPLKTFFTVIVPLTKGG IIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIV PIMWFHKHQQKSVGEHG >gi|223713571|gb|ACDM01000027.1| GENE 53 51694 - 52827 1472 377 aa, chain - ## HITS:1 COG:potG KEGG:ns NR:ns ## COG: potG COG3842 # Protein_GI_number: 16128823 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1 377 28 404 404 762 99.0 0 MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKST LLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDK LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL DKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH PTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPE KIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWG DEVRLCWEVDSCVVLTV >gi|223713571|gb|ACDM01000027.1| GENE 54 52922 - 54034 1175 370 aa, chain - ## HITS:1 COG:potF KEGG:ns NR:ns ## COG: potF COG0687 # Protein_GI_number: 16128822 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli K12 # 1 370 1 370 370 734 100.0 0 MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYD VFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLV AKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFL DAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICV AIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL RPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRT RAWTKVKSGK >gi|223713571|gb|ACDM01000027.1| GENE 55 54385 - 54861 445 158 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_0925 NR:ns ## KEGG: EcE24377A_0925 # Name: not_defined # Def: TPR repeat-containing protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 158 17 174 174 310 100.0 1e-83 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH >gi|223713571|gb|ACDM01000027.1| GENE 56 54949 - 55851 1507 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15830186|ref|NP_308959.1| ribosomal protein S6 modification protein [Escherichia coli O157:H7 str. Sakai] # 1 300 1 300 300 585 99 1e-166 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDA VIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIA HSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYI KEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTM ALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG >gi|223713571|gb|ACDM01000027.1| GENE 57 55912 - 56634 719 240 aa, chain - ## HITS:1 COG:mdaA KEGG:ns NR:ns ## COG: mdaA COG0778 # Protein_GI_number: 16128819 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1 240 1 240 240 477 100.0 1e-135 MTPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREEL VTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAE SLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENS YQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWATR >gi|223713571|gb|ACDM01000027.1| GENE 58 56618 - 56905 249 95 aa, chain - ## HITS:1 COG:no KEGG:SSON_0835 NR:ns ## KEGG: SSON_0835 # Name: ybjC # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 95 1 95 95 137 100.0 2e-31 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAA VVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH >gi|223713571|gb|ACDM01000027.1| GENE 59 57065 - 57322 483 85 aa, chain + ## HITS:1 COG:grxA KEGG:ns NR:ns ## COG: grxA COG0695 # Protein_GI_number: 16128817 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli K12 # 1 85 1 85 85 168 100.0 2e-42 MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVP QIFVDQQHIGGYTDFAAWVKENLDA >gi|223713571|gb|ACDM01000027.1| GENE 60 57352 - 57648 103 98 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_0827 NR:ns ## KEGG: ECIAI39_0827 # Name: ybjM # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 98 28 125 125 170 100.0 1e-41 MKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTR SFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ >gi|223713571|gb|ACDM01000027.1| GENE 61 57999 - 58277 276 92 aa, chain + ## HITS:1 COG:ECs0927 KEGG:ns NR:ns ## COG: ECs0927 COG2985 # Protein_GI_number: 15830181 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 90 1 90 561 153 95.0 9e-38 MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTD ALNLGFMLFIFCVGVEAGPNFFPFFFAMGKIT >gi|223713571|gb|ACDM01000027.1| GENE 62 58277 - 59683 1533 468 aa, chain + ## HITS:1 COG:ECs0927 KEGG:ns NR:ns ## COG: ECs0927 COG2985 # Protein_GI_number: 15830181 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 468 94 561 561 883 100.0 0 MLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLS LALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLP VIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALV GYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNR VIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIG LMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFM AGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGAR TCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG Prediction of potential genes in microbial genomes Time: Mon May 16 18:54:46 2011 Seq name: gi|223713570|gb|ACDM01000028.1| Escherichia sp. 4_1_40B cont1.28, whole genome shotgun sequence Length of sequence - 3710 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 81 - 299 158 ## B21_00857 hypothetical protein - Prom 329 - 388 4.1 2 1 Op 2 2/0.000 - CDS 390 - 1490 753 ## COG3500 Phage protein D 3 1 Op 3 2/0.000 - CDS 1487 - 1972 460 ## COG3499 Phage protein U 4 1 Op 4 . - CDS 1969 - 3381 1083 ## COG5283 Phage-related tail protein 5 1 Op 5 . - CDS 3404 - 3658 251 ## COG3497 Phage tail sheath protein FI Predicted protein(s) >gi|223713570|gb|ACDM01000028.1| GENE 1 81 - 299 158 72 aa, chain - ## HITS:1 COG:no KEGG:B21_00857 NR:ns ## KEGG: B21_00857 # Name: ybl53 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 72 12 83 83 127 100.0 1e-28 MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHETFVRSIATPKESNPVQP HPMKSGQVALSL >gi|223713570|gb|ACDM01000028.1| GENE 2 390 - 1490 753 366 aa, chain - ## HITS:1 COG:STM2695 KEGG:ns NR:ns ## COG: STM2695 COG3500 # Protein_GI_number: 16766008 # Func_class: R General function prediction only # Function: Phage protein D # Organism: Salmonella typhimurium LT2 # 1 366 1 366 366 629 87.0 1e-180 MNFSSELLNKGNKTPAFSISIEGKDITTVLDNRLMGLTLTDNRGFEADQLDLELDDADGK IVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLTIRARSADFRETLNTRREK SWHKTTVGEVVKEIAARHKLKMALGKDLSDKPVEHIDQTNESDGSFLMRLARQYGAIASV KNGNLLFIRQGQGKSASGKPLPVITIIRKDGDSHRFTLADRGAYTGVIASWLHTREPAKK ESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVLNRTYANRSNAERAAKMQWERLQRG VASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTLTHTVSPDNGFTTSLELEVKI DDFEME >gi|223713570|gb|ACDM01000028.1| GENE 3 1487 - 1972 460 161 aa, chain - ## HITS:1 COG:STM2696 KEGG:ns NR:ns ## COG: STM2696 COG3499 # Protein_GI_number: 16766009 # Func_class: R General function prediction only # Function: Phage protein U # Organism: Salmonella typhimurium LT2 # 1 160 1 160 161 267 86.0 5e-72 MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDMLTLSGVLMPEI TGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTKTEFFRDGMPRRIEFTLSL KRVDESLSDMFGDLSAQLNNLQDTATSALSDISKTVGGLLS >gi|223713570|gb|ACDM01000028.1| GENE 4 1969 - 3381 1083 470 aa, chain - ## HITS:1 COG:STM2697 KEGG:ns NR:ns ## COG: STM2697 COG5283 # Protein_GI_number: 16766010 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Salmonella typhimurium LT2 # 107 470 582 935 935 457 73.0 1e-128 MKVAAVVAAVTVGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSSALSWL AGAPLALLRRGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRA VAVMFMNPLAALRGGLAAAGAVLRVLASGPLAMLRIALYAVSGLLGALLSPIGLVVTALA GVALVVWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLL TPVKSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAK LPESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPYGQFGIVGENGPEIVN GPANVTSRRNTAALAAVVAGMMGVAAAPAELPPLHPLALPAKGGEAMVSRAATVPPVQRI EAPTQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA >gi|223713570|gb|ACDM01000028.1| GENE 5 3404 - 3658 251 84 aa, chain - ## HITS:1 COG:STM2701 KEGG:ns NR:ns ## COG: STM2701 COG3497 # Protein_GI_number: 16766014 # Func_class: R General function prediction only # Function: Phage tail sheath protein FI # Organism: Salmonella typhimurium LT2 # 1 76 49 124 390 115 81.0 2e-26 MLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEDETTTNIIGAVTAEG KKTGMKALLHGEKHYGGVAPLGGS Prediction of potential genes in microbial genomes Time: Mon May 16 18:54:53 2011 Seq name: gi|223713569|gb|ACDM01000029.1| Escherichia sp. 4_1_40B cont1.29, whole genome shotgun sequence Length of sequence - 18445 bp Number of predicted genes - 28, with homology - 28 Number of transcription units - 11, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 2 - 1412 950 ## COG5301 Phage-related tail fibre protein 2 1 Op 2 4/0.000 - CDS 1409 - 2014 484 ## COG4385 Bacteriophage P2-related tail formation protein 3 1 Op 3 4/0.000 - CDS 2007 - 2915 931 ## COG3948 Phage-related baseplate assembly protein 4 1 Op 4 4/0.000 - CDS 2902 - 3261 381 ## COG3628 Phage baseplate assembly protein W 5 1 Op 5 . - CDS 3258 - 3836 447 ## COG4540 Phage P2 baseplate assembly protein gpV - Prom 3904 - 3963 4.9 + Prom 4084 - 4143 5.5 6 2 Tu 1 . + CDS 4330 - 4746 191 ## B21_00846 hypothetical protein + Term 4856 - 4900 4.0 7 3 Tu 1 . - CDS 4688 - 5005 266 ## B21_00845 hypothetical protein 8 4 Tu 1 . - CDS 5127 - 5585 353 ## E2348C_0827 predicted tail protein 9 5 Tu 1 . + CDS 5463 - 5993 305 ## COG5518 Bacteriophage capsid portal protein 10 6 Op 1 . - CDS 6015 - 6872 181 ## SARI_03986 hypothetical protein 11 6 Op 2 . - CDS 6882 - 7127 153 ## gi|256023542|ref|ZP_05437407.1| hypothetical protein E4_09223 + Prom 7280 - 7339 3.2 12 7 Op 1 . + CDS 7433 - 8434 232 ## t4325 hypothetical protein 13 7 Op 2 . + CDS 8434 - 9513 380 ## SPA2585 hypothetical protein 14 7 Op 3 . + CDS 9500 - 10183 92 ## Bcen2424_0192 hypothetical protein + Term 10240 - 10283 12.1 15 8 Op 1 . - CDS 10279 - 10512 294 ## LF82_p406 hypothetical protein 16 8 Op 2 . - CDS 10523 - 10711 128 ## ECS88_2839 hypothetical protein - Prom 10755 - 10814 3.9 - Term 10771 - 10814 -0.9 17 9 Op 1 . - CDS 10863 - 13277 1470 ## LF82_p407 replication protein for prophage 18 9 Op 2 1/0.000 - CDS 13274 - 14131 437 ## COG0338 Site-specific DNA methylase 19 9 Op 3 . - CDS 14128 - 14355 273 ## COG1734 DnaK suppressor protein 20 9 Op 4 . - CDS 14355 - 14588 341 ## t3407 hypothetical protein 21 9 Op 5 . - CDS 14656 - 14997 152 ## ECS88_2845 hypothetical protein 22 9 Op 6 . - CDS 15020 - 15244 129 ## ECS88_2846 hypothetical protein 23 9 Op 7 . - CDS 15115 - 15411 78 ## ECS88_2847 conserved hypothetical protein fil of phage origin 24 9 Op 8 . - CDS 15419 - 15928 439 ## c0936 hypothetical protein 25 9 Op 9 . - CDS 15993 - 16196 227 ## c0935 putative regulator for prophage - Prom 16279 - 16338 3.9 + Prom 16154 - 16213 3.5 26 10 Op 1 . + CDS 16450 - 16911 58 ## COG2932 Predicted transcriptional regulator 27 10 Op 2 . + CDS 16927 - 17118 106 ## ECBD_2774 hypothetical protein + Prom 17227 - 17286 3.7 28 11 Tu 1 . + CDS 17307 - 18383 674 ## COG0582 Integrase Predicted protein(s) >gi|223713569|gb|ACDM01000029.1| GENE 1 2 - 1412 950 470 aa, chain - ## HITS:1 COG:STM2706 KEGG:ns NR:ns ## COG: STM2706 COG5301 # Protein_GI_number: 16766019 # Func_class: R General function prediction only # Function: Phage-related tail fibre protein # Organism: Salmonella typhimurium LT2 # 1 259 1 259 524 385 83.0 1e-106 MSTKFYTLLTDIGAAKLASAAALGVPLKITHMAVGDGGGTLPTPDAKQTALVNEKRRAAL NMLYIDPQNSSQIIAEQVIPENEGGWWIREVGLFDESGALIAVGNCPESYKPQLAEGSGR TQTVRMVLITSSTGNIILKIDPAVVLATRKYVDDKALELKVYVDDLIAKHLAALDPHSQY APKESPTFTGTPKAPTPAAGNNTTQLATTAFVQAALTALINGAPATLDTLKEIAAAINND PKFSTTINNALALKAPLSNPALTGTPTAPTAAQSVNNTQIATTAFVKSAIAAMVGSAPAA LDTLNELAAALGNDPNFATTMLNALAGKQPLDNTLTNLSGKDVAGLLTYLGLGEGSALPV GVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKVYPTNKLPDLRGEFIRGWDDGRGVDAG RQLLSSQGDAIRNIEGFADGGIGMSFDAIRGAFYDAGTRSARMPNNTTTI >gi|223713569|gb|ACDM01000029.1| GENE 2 1409 - 2014 484 201 aa, chain - ## HITS:1 COG:STM2707 KEGG:ns NR:ns ## COG: STM2707 COG4385 # Protein_GI_number: 16766020 # Func_class: R General function prediction only # Function: Bacteriophage P2-related tail formation protein # Organism: Salmonella typhimurium LT2 # 1 201 1 201 201 389 92.0 1e-108 MNSLLPPGSTSLERRLAQTCSGISDLQVPLRDLWNPTTCPVSFLPYLAWAFSVDRWDEDW TESVKRQVVKDAFYIHQHKGTTSAVRRVVEPFGFLIRIIEWWQTGETPGTFRLDIGVQDQ GITEDTYLELERLISDAKPCSRHMIGMSINLQTSGPHWVGAASYLGEEITIYPYINETII SGGTAHEGGAVHVIDTMRVNP >gi|223713569|gb|ACDM01000029.1| GENE 3 2007 - 2915 931 302 aa, chain - ## HITS:1 COG:STM2708 KEGG:ns NR:ns ## COG: STM2708 COG3948 # Protein_GI_number: 16766021 # Func_class: R General function prediction only # Function: Phage-related baseplate assembly protein # Organism: Salmonella typhimurium LT2 # 1 302 1 302 302 462 89.0 1e-130 MAVIDLSQLPAPQIVDVPDFETLLAERKAEFVALHPKDEQEAVIRTLELESEPVTKLLQE NAYRELLLRQRINEAAQAVMVAYAMGGDLDQLAANYNVKRLTVTPADDDAVPPVAAVMES DEALRLRVPAAFEGLSVAGPTAAYEFHARSADGRVADASATSPAPAEVVLTVLSREGDGT AEKDLLDVVEKALNSENVRPVADRLTVRSAEIIPYRVEATIFLYPGPEAEPVMAAAKASL QKYIASQTRLGRDIRRSAIFAALHVEGVQRVELASPLADVVLNKTQAASCTQWSVTNGGT DE >gi|223713569|gb|ACDM01000029.1| GENE 4 2902 - 3261 381 119 aa, chain - ## HITS:1 COG:STM2709 KEGG:ns NR:ns ## COG: STM2709 COG3628 # Protein_GI_number: 16766022 # Func_class: R General function prediction only # Function: Phage baseplate assembly protein W # Organism: Salmonella typhimurium LT2 # 1 118 1 118 119 188 83.0 3e-48 MTLYSGMNNTSGKAITDIDHLRQSVRDILLTPQGSRIARREYGSLLSALIDQPQNPALRL QVMSAVYVALSRWEPRLTLDSITINSDFDGSMVVELTGRRNNGVPVSLSVSTGAENGSD >gi|223713569|gb|ACDM01000029.1| GENE 5 3258 - 3836 447 192 aa, chain - ## HITS:1 COG:STM2710 KEGG:ns NR:ns ## COG: STM2710 COG4540 # Protein_GI_number: 16766023 # Func_class: R General function prediction only # Function: Phage P2 baseplate assembly protein gpV # Organism: Salmonella typhimurium LT2 # 1 192 1 192 192 325 85.0 4e-89 MNAQLTEIMRLITNLIRIGVVTEVDRENWLCRVKTGDLETNWINWLTLRAGNARTWWRPS EGEQVVLLSLGGNLETAFALPAIYSNQFAPPSTSADACVTEHPDGGWFEYEPATGRWYVR GIKSMVIEAADNITLKTSEFMLEADRTRINSEVVINGGVTQGGGAMSSNGIVVDAHQHTG VLKGGDTTGGPV >gi|223713569|gb|ACDM01000029.1| GENE 6 4330 - 4746 191 138 aa, chain + ## HITS:1 COG:no KEGG:B21_00846 NR:ns ## KEGG: B21_00846 # Name: ybl42 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 138 131 268 268 258 98.0 4e-68 MSKKLATAATILTTPDWEISKDDCEESSSASTEKYKSLTIEHKEILCKLLTTDEGNAYID EEVKNFVKDKFFIYSFAPTTIFILLWISLGFILTIHYSKKVRKYILTEQKNAIHWAYGEF KTEGIYSIYQELERKTHH >gi|223713569|gb|ACDM01000029.1| GENE 7 4688 - 5005 266 105 aa, chain - ## HITS:1 COG:no KEGG:B21_00845 NR:ns ## KEGG: B21_00845 # Name: ybl41 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 105 44 148 148 169 98.0 2e-41 MQRNPDGSSYEPRKVTARSKKGRIKRQMFAKLRTTKYLKTAASADSASVQFEGKVQRIAR VHHYGLRDRVSRKGPEVRYAERRLLGLNGESYVLTLDILNRFLLS >gi|223713569|gb|ACDM01000029.1| GENE 8 5127 - 5585 353 152 aa, chain - ## HITS:1 COG:no KEGG:E2348C_0827 NR:ns ## KEGG: E2348C_0827 # Name: not_defined # Def: predicted tail protein # Organism: E.coli_0127 # Pathway: not_defined # 57 152 48 143 143 192 100.0 3e-48 MTAIDVVFTPEQRSGLVQQGGRNGGQIFRQAVNFLVQVRLHQVKDTAFSELVGLRGYTLN VVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVCDISLNLQLT ERVLVSTDGSVSSVEAVAEPDEPEEMWTVKRG >gi|223713569|gb|ACDM01000029.1| GENE 9 5463 - 5993 305 176 aa, chain + ## HITS:1 COG:STM2723 KEGG:ns NR:ns ## COG: STM2723 COG5518 # Protein_GI_number: 16766036 # Func_class: R General function prediction only # Function: Bacteriophage capsid portal protein # Organism: Salmonella typhimurium LT2 # 1 176 168 343 346 335 92.0 4e-92 MEPDLNQEIYGLPEYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNN IRQAMKSAKGPGNFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRV PPQMMGIMPSNVGGFGDVEKASKVFVRNELIPLQKRIKEINEWLSDEIISFQPYEL >gi|223713569|gb|ACDM01000029.1| GENE 10 6015 - 6872 181 285 aa, chain - ## HITS:1 COG:no KEGG:SARI_03986 NR:ns ## KEGG: SARI_03986 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 6 273 13 268 280 110 27.0 4e-23 MFSDKQKQQIGNNSYAIQAGNNVNVSGMSFSEVRELFNILFENQFPKLKDVAYAAAQENA KDFEERVVSDLTKNVDRLIIDKFCDPDVQATLTEALKSSARKGKKANMDVLSQLLVERVS NNNDDFRDIVLTEAVTVVPKLTQQQISLITIVFLLKNVEIKDPVNGVRLDLLEHNFRNFE SMYTNGFNLSQAQIYHIQYAGACSWNTFLGMDVEDYFMSKYPTDIKDKSAYISNLKLVAP HVSAFLEKFSKSNYQGIELTSVGQAIALAVFSRYVGRLDYNIWLK >gi|223713569|gb|ACDM01000029.1| GENE 11 6882 - 7127 153 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256023542|ref|ZP_05437407.1| ## NR: gi|256023542|ref|ZP_05437407.1| hypothetical protein E4_09223 [Escherichia sp. 4_1_40B] # 1 81 1 81 81 144 100.0 3e-33 MKIFAIVITCMLASIAGLWLYMDPGFDSIVAFLAAVSALAGLLITTKNKYNSMSQSVGDN STAVQARGDIKIDCINTGDKK >gi|223713569|gb|ACDM01000029.1| GENE 12 7433 - 8434 232 333 aa, chain + ## HITS:1 COG:no KEGG:t4325 NR:ns ## KEGG: t4325 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 3 306 2 326 354 207 37.0 4e-52 MGGETSAIQRVAGKISDDIFSVFKWDRAARADMNWDCCQEAHSKKTHPSDVVFFYIDPYE EEMVYLNTDLKSYAEGTIGKKIVEGALTSLALATECANVSEEWRLKYVHDDSLGYNVRGL LFLYNHDNLYDKDFYENITKKLDHSSINCPPNIKLHLLDPYKISDLINISSDITKLIGSG KLPQPDKFTYYYPDLSLTRIKHPINQTTPATIELLTSPYIIIKHEAFSWLRDKNPEGYVV YYNQPGDSVDEFVYFFDMLSTYQILTEGKPIVLRHCHIHPNENAIHHFERAKKKYSTDWL LGEDERLFLKIDFDKTDKIVVEYNLEQIGMEQR >gi|223713569|gb|ACDM01000029.1| GENE 13 8434 - 9513 380 359 aa, chain + ## HITS:1 COG:no KEGG:SPA2585 NR:ns ## KEGG: SPA2585 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi # Pathway: not_defined # 3 349 2 351 354 130 28.0 9e-29 MAKKLYFATDKNIYDALHHKRITAAKLHELLLNRGVFLSPELDKEILIEEISKLPHGFNE LEHIKKLVKTYDPRESTTSVSFQTSTNQAELKSAAEALKKTCSPSKGQSLNIVAKKDGSL TVEYKYEEIDLSKTALRQIDKRNVIIELRPGADKVEVRMPQNPEAKKVIESLQNELSKIK SEPIERFEISLLAITDPTLRSQFFQELMNGLRGYETDDVTKVELNRSTDASEDEDKEETI DTGFVKKAVLNGEGVNSSAIFSQLHEKGYYIGRIAWSSKPTSGIGDRINVEAFFKDSEKC CDFAYQIKGINNQKEDGFNVTIRAATAQEKKHISELIESAAENAYNIIIGSEVNEDEKG >gi|223713569|gb|ACDM01000029.1| GENE 14 9500 - 10183 92 227 aa, chain + ## HITS:1 COG:no KEGG:Bcen2424_0192 NR:ns ## KEGG: Bcen2424_0192 # Name: not_defined # Def: hypothetical protein # Organism: B.cenocepacia_HI2424 # Pathway: not_defined # 2 206 3 206 222 88 25.0 2e-16 MKKVKWLKLNIRLEFETAVRRLSLDSFTEDKGKGFIFDKIRHDFANGRFVERIVYHDKIL SFDGSETTVERIEYRTTNFSVALDSLPVMQITNPPRTLKPFSQALVKNLGLGVSLEEIDI NPIDWLNEISSSVNINLTQLDISRVRVSDYATAKMQIIGSNDLRKYYKEELEGKKIRIDR LVCSVNSLEYSGKLKITNSGLAYIDVRNENEFTKIVFDTLKKVTLQS >gi|223713569|gb|ACDM01000029.1| GENE 15 10279 - 10512 294 77 aa, chain - ## HITS:1 COG:no KEGG:LF82_p406 NR:ns ## KEGG: LF82_p406 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_LF82 # Pathway: not_defined # 1 77 25 101 101 133 97.0 2e-30 MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTAIRIRKGSANGVELSGLKLDEDKK RVMEIMQQVWEDDSWLH >gi|223713569|gb|ACDM01000029.1| GENE 16 10523 - 10711 128 62 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2839 NR:ns ## KEGG: ECS88_2839 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 62 35 96 96 120 100.0 2e-26 MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDELMAKIRTHEYNRSMDV IS >gi|223713569|gb|ACDM01000029.1| GENE 17 10863 - 13277 1470 804 aa, chain - ## HITS:1 COG:no KEGG:LF82_p407 NR:ns ## KEGG: LF82_p407 # Name: not_defined # Def: replication protein for prophage # Organism: E.coli_LF82 # Pathway: not_defined # 1 804 1 804 804 1585 98.0 0 MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALSNLIALYAADNEQEHLR REALSDQVWERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHI SKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHVGLDGLL ILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVI PPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKK ASPYVSYEAVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMAC VKGLELIAEMRSDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRK AMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTG PRFKSELINPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRV QQFRFFGIPGRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIM KQGGVLVPRKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAV DVQEAAADQGACAPWTRGNNCPLAENLNQQDKDKSADGDTRTDITRMDDKELHDYLHSMS KKERRELAARLRLVKLKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIP SGAGLRIFYRNQRLQEDDKWRNLY >gi|223713569|gb|ACDM01000029.1| GENE 18 13274 - 14131 437 285 aa, chain - ## HITS:1 COG:STM2730 KEGG:ns NR:ns ## COG: STM2730 COG0338 # Protein_GI_number: 16766042 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Salmonella typhimurium LT2 # 1 285 1 283 285 422 72.0 1e-118 MSTILKWAGNKTAIMSELKKHLPAGPRLVEPFAGSCAVMMETEYPSYLVADINPDLINLY KKVAADCESFISRARVLFEIANRGGAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYRGL CRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVVYCDP PYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFTHHYIKV KRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA >gi|223713569|gb|ACDM01000029.1| GENE 19 14128 - 14355 273 75 aa, chain - ## HITS:1 COG:STM2731 KEGG:ns NR:ns ## COG: STM2731 COG1734 # Protein_GI_number: 16766043 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Salmonella typhimurium LT2 # 1 75 1 75 75 124 90.0 5e-29 MADAMDLVQQRVEEERQRHIRAARAKTPGVSRVLCIECEAPIPPARRRAIPGVQLCITCQ EIAELKGKHYNGGAV >gi|223713569|gb|ACDM01000029.1| GENE 20 14355 - 14588 341 77 aa, chain - ## HITS:1 COG:no KEGG:t3407 NR:ns ## KEGG: t3407 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 1 77 1 77 77 104 96.0 8e-22 MRNIETLSTKTGPDDAGLNILLTEARLEERRARAEAMAARLDSLACHITSRQLNHVEAAE LLRVAAEAIQNEAQEIH >gi|223713569|gb|ACDM01000029.1| GENE 21 14656 - 14997 152 113 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2845 NR:ns ## KEGG: ECS88_2845 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 113 1 113 113 191 94.0 5e-48 MAINGAAATVPLSPGERLNGLNHIAELRAKVFGLNIESELERFIKDMRDPRDINYERNKR ALAAIFFIAKIPAERHSISINELTTDEKRELIKVMNHLRAVVSLFPRRLAMPN >gi|223713569|gb|ACDM01000029.1| GENE 22 15020 - 15244 129 74 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2846 NR:ns ## KEGG: ECS88_2846 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 74 1 74 74 134 98.0 7e-31 MYAAESEVVYQFRYRGESYSVPEDDLLCCYPSLSGDGSYFFTLKDGTFLRGEQVKETIRK NVSPLERYRKNKER >gi|223713569|gb|ACDM01000029.1| GENE 23 15115 - 15411 78 98 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2847 NR:ns ## KEGG: ECS88_2847 # Name: fil # Def: conserved hypothetical protein fil of phage origin # Organism: E.coli_S88 # Pathway: not_defined # 1 98 11 108 108 181 94.0 8e-45 MLTKEPSFASLLVKQSPAMHYGHGWITGEDGKRWHPCHSQDELLSELTTRKRRKSKCMRQ KVKWFISFVTEGRVIQYLKMICSVAIRHCRAMAVTFSR >gi|223713569|gb|ACDM01000029.1| GENE 24 15419 - 15928 439 169 aa, chain - ## HITS:1 COG:no KEGG:c0936 NR:ns ## KEGG: c0936 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 169 19 187 187 327 100.0 1e-88 MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLNPAQPHLLTAPEIWLLT DLTEDSTLVDGFLAQIHCLPCVPINEVAKEKLPHYVMSATAEIGRVAAGAVSGDVKTSAG RRDAISSINSVTRLMALAAVSLQARLQANPAMASAVDTVTGLGASFGLL >gi|223713569|gb|ACDM01000029.1| GENE 25 15993 - 16196 227 67 aa, chain - ## HITS:1 COG:no KEGG:c0935 NR:ns ## KEGG: c0935 # Name: coxT # Def: putative regulator for prophage # Organism: E.coli_CFT073 # Pathway: not_defined # 1 66 1 66 73 113 96.0 2e-24 MTPNISITLNTPHVTIERYSELTGLSIDTINDMLADGRLPRHRLRKDKKREKVMINLAAL TVDALSA >gi|223713569|gb|ACDM01000029.1| GENE 26 16450 - 16911 58 153 aa, chain + ## HITS:1 COG:STM2738 KEGG:ns NR:ns ## COG: STM2738 COG2932 # Protein_GI_number: 16766050 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 147 42 206 210 104 33.0 6e-23 MATRYMRDIFPADWVIQCALETGTSLNWLTTGHGSKQASANTNTIEVEKYLLSDGALQKD GFYIFDKGFLPSTFKKPFVITDNNSEFICDKEFDDIRDGKWVISIDGEITIRDITRLPGG RIFVEGGNRAFECKIEDIEIIGKIISLTVKYVK >gi|223713569|gb|ACDM01000029.1| GENE 27 16927 - 17118 106 63 aa, chain + ## HITS:1 COG:no KEGG:ECBD_2774 NR:ns ## KEGG: ECBD_2774 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 63 1 63 63 107 98.0 1e-22 MLGKVFFVVLSCSLLLNPLTTYARNYPCSGKKGGVSHCTSDGKFVCNDGTISKSKKICTK NSR >gi|223713569|gb|ACDM01000029.1| GENE 28 17307 - 18383 674 358 aa, chain + ## HITS:1 COG:STM2739 KEGG:ns NR:ns ## COG: STM2739 COG0582 # Protein_GI_number: 16766051 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1 336 1 337 341 369 53.0 1e-102 MAVRKLTTGKWLCECYPAGRSGRRVRKQFVTKGEALAFERHTMEETEAKPWLGESVDRRT LKDVVELWFKLHGKSLTAGQHVYDKLLLMVDALGNPLATDLTSKMFAHYRDKRLTGEIYF SEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQI VELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPIS KELYEEIMALDGFNFFTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILA LQKILGHHDIKMTMRYAHLAPDHLETALRFNPLATLPSGDKVATKWRQRLALPRNNHH Prediction of potential genes in microbial genomes Time: Mon May 16 18:56:12 2011 Seq name: gi|223713568|gb|ACDM01000030.1| Escherichia sp. 4_1_40B cont1.30, whole genome shotgun sequence Length of sequence - 86364 bp Number of predicted genes - 79, with homology - 78 Number of transcription units - 46, operones - 17 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 20 - 556 479 ## COG3226 Uncharacterized protein conserved in bacteria - Prom 618 - 677 2.0 2 2 Op 1 2/0.682 + CDS 640 - 1848 1062 ## COG0477 Permeases of the major facilitator superfamily 3 2 Op 2 . + CDS 1848 - 2663 838 ## COG0561 Predicted hydrolases of the HAD superfamily 4 2 Op 3 . + CDS 2755 - 3033 216 ## ECO103_0887 hypothetical protein + Term 3039 - 3083 5.2 - Term 3030 - 3068 2.2 5 3 Tu 1 . - CDS 3074 - 4306 1299 ## COG0477 Permeases of the major facilitator superfamily - Prom 4409 - 4468 7.1 6 4 Op 1 4/0.455 + CDS 4591 - 5187 522 ## COG0671 Membrane-associated phospholipid phosphatase 7 4 Op 2 . + CDS 5245 - 6003 671 ## COG1349 Transcriptional regulators of sugar metabolism - Term 6002 - 6038 6.3 8 5 Tu 1 . - CDS 6050 - 7273 1265 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 7293 - 7352 5.1 + Prom 7252 - 7311 3.8 9 6 Tu 1 . + CDS 7499 - 8125 660 ## COG0625 Glutathione S-transferase 10 7 Tu 1 . - CDS 8122 - 9093 867 ## COG2133 Glucose/sorbosone dehydrogenases - Prom 9258 - 9317 4.4 - Term 9304 - 9343 5.0 11 8 Tu 1 . - CDS 9348 - 9731 224 ## EcE24377A_0907 biofilm formation regulatory protein BssR - Prom 9796 - 9855 4.5 + Prom 9850 - 9909 4.9 12 9 Tu 1 . + CDS 9944 - 11269 1844 ## PROTEIN SUPPORTED gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein - Term 11262 - 11305 7.7 13 10 Op 1 6/0.182 - CDS 11316 - 12644 1035 ## COG2199 FOG: GGDEF domain 14 10 Op 2 3/0.636 - CDS 12652 - 15000 1584 ## COG2200 FOG: EAL domain - Prom 15080 - 15139 5.6 - Term 15069 - 15103 -1.0 15 11 Op 1 49/0.000 - CDS 15178 - 16089 810 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 16 11 Op 2 38/0.000 - CDS 16092 - 17012 983 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 17 11 Op 3 11/0.000 - CDS 17030 - 18568 1653 ## COG0747 ABC-type dipeptide transport system, periplasmic component 18 11 Op 4 3/0.636 - CDS 18588 - 20459 841 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 19 11 Op 5 . - CDS 20446 - 21411 1047 ## COG1446 Asparaginase - Prom 21479 - 21538 7.5 + Prom 21419 - 21478 2.9 20 12 Op 1 9/0.000 + CDS 21615 - 22850 1259 ## COG0303 Molybdopterin biosynthesis enzyme 21 12 Op 2 . + CDS 22850 - 23599 863 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 + Term 23760 - 23799 0.1 - Term 23612 - 23640 0.5 22 13 Tu 1 . - CDS 23675 - 24343 842 ## COG0176 Transaldolase - Prom 24428 - 24487 3.0 + Prom 24324 - 24383 3.6 23 14 Op 1 11/0.000 + CDS 24468 - 25367 1009 ## COG1180 Pyruvate-formate lyase-activating enzyme 24 14 Op 2 2/0.682 + CDS 25373 - 27805 2915 ## COG1882 Pyruvate-formate lyase + Prom 27834 - 27893 3.8 25 15 Tu 1 . + CDS 27951 - 28766 922 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 28775 - 28805 2.6 + Prom 28815 - 28874 3.9 26 16 Tu 1 . + CDS 28918 - 30183 1057 ## B21_00805 hypothetical protein + Term 30339 - 30375 2.4 - Term 30293 - 30328 -0.7 27 17 Tu 1 . - CDS 30424 - 31992 2057 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 32135 - 32194 4.1 + Prom 32120 - 32179 4.9 28 18 Tu 1 . + CDS 32235 - 33155 1097 ## COG1376 Uncharacterized protein conserved in bacteria + Term 33171 - 33212 3.0 - Term 33163 - 33195 3.1 29 19 Op 1 4/0.455 - CDS 33214 - 34332 1044 ## COG0471 Di- and tricarboxylate transporters 30 19 Op 2 . - CDS 34329 - 34796 550 ## COG1321 Mn-dependent transcriptional regulator - Prom 34842 - 34901 4.1 + Prom 34855 - 34914 3.9 31 20 Tu 1 . + CDS 34982 - 35110 71 ## SbBS512_E2532 hypothetical protein + Prom 35207 - 35266 2.2 32 21 Tu 1 . + CDS 35382 - 36965 1522 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase + Term 36976 - 37003 -0.9 - Term 36948 - 37010 10.7 33 22 Tu 1 . - CDS 37014 - 37529 561 ## COG3637 Opacity protein and related surface antigens - Prom 37555 - 37614 4.6 34 23 Tu 1 . + CDS 37882 - 38769 953 ## COG5006 Predicted permease, DMT superfamily + Term 38778 - 38820 10.1 + Prom 38969 - 39028 4.8 35 24 Tu 1 . + CDS 39068 - 39571 641 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 39607 - 39650 9.5 + Prom 39869 - 39928 4.1 36 25 Op 1 31/0.000 + CDS 39975 - 40721 1005 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 37 25 Op 2 34/0.000 + CDS 40860 - 41519 944 ## COG0765 ABC-type amino acid transport system, permease component 38 25 Op 3 3/0.636 + CDS 41516 - 42238 595 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 42412 - 42471 5.6 39 26 Tu 1 . + CDS 42499 - 44724 2041 ## COG0668 Small-conductance mechanosensitive channel 40 27 Tu 1 . - CDS 44721 - 45647 779 ## COG3129 Predicted SAM-dependent methyltransferase - Prom 45754 - 45813 5.3 + Prom 45762 - 45821 8.7 41 28 Tu 1 . + CDS 45923 - 46183 241 ## ECIAI1_0844 hypothetical protein + Term 46198 - 46231 2.2 + Prom 46272 - 46331 3.7 42 29 Op 1 2/0.682 + CDS 46448 - 48730 2038 ## COG4774 Outer membrane receptor for monomeric catechols + Term 48740 - 48765 -0.5 43 29 Op 2 1/0.864 + CDS 48772 - 49449 688 ## COG3128 Uncharacterized iron-regulated protein 44 29 Op 3 . + CDS 49523 - 49789 323 ## COG1734 DnaK suppressor protein + Prom 49828 - 49887 2.5 45 30 Tu 1 . + CDS 50054 - 50314 280 ## EC55989_0846 hypothetical protein + Term 50515 - 50548 5.2 - Term 50320 - 50378 9.1 46 31 Tu 1 . - CDS 50543 - 51628 1335 ## COG2055 Malate/L-lactate dehydrogenases - Prom 51655 - 51714 3.6 - Term 51723 - 51756 3.0 47 32 Op 1 4/0.455 - CDS 51769 - 52731 968 ## COG0547 Anthranilate phosphoribosyltransferase 48 32 Op 2 . - CDS 52759 - 54909 2075 ## COG1199 Rad3-related DNA helicases - Prom 54936 - 54995 2.5 + Prom 54882 - 54941 2.6 49 33 Tu 1 . + CDS 55062 - 55511 434 ## COG3236 Uncharacterized protein conserved in bacteria + Term 55666 - 55702 2.4 50 34 Tu 1 . - CDS 55743 - 57107 1433 ## COG0513 Superfamily II DNA and RNA helicases - Prom 57226 - 57285 2.9 + Prom 57209 - 57268 3.5 51 35 Op 1 15/0.000 + CDS 57336 - 58007 734 ## COG1309 Transcriptional regulator 52 35 Op 2 10/0.000 + CDS 58010 - 59005 1289 ## COG0845 Membrane-fusion protein 53 35 Op 3 45/0.000 + CDS 58998 - 60734 343 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 54 35 Op 4 22/0.000 + CDS 60727 - 61860 1442 ## COG0842 ABC-type multidrug transport system, permease component 55 35 Op 5 . + CDS 61871 - 62977 1190 ## COG0842 ABC-type multidrug transport system, permease component 56 36 Tu 1 . - CDS 62939 - 63349 485 ## G2583_1019 inner membrane protein YbhQ - Prom 63440 - 63499 3.0 + Prom 63316 - 63375 1.5 57 37 Op 1 8/0.000 + CDS 63482 - 64243 616 ## COG3568 Metal-dependent hydrolase 58 37 Op 2 5/0.273 + CDS 64240 - 65481 1174 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 59 37 Op 3 . + CDS 65481 - 66437 1161 ## COG0392 Predicted integral membrane protein 60 38 Op 1 . - CDS 66473 - 67186 298 ## COG0670 Integral membrane protein, interacts with FtsH 61 38 Op 2 . - CDS 67213 - 67305 63 ## - Term 67341 - 67371 1.0 62 38 Op 3 5/0.273 - CDS 67391 - 68095 737 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 68121 - 68180 1.9 63 39 Op 1 21/0.000 - CDS 68232 - 68684 631 ## COG0314 Molybdopterin converting factor, large subunit 64 39 Op 2 11/0.000 - CDS 68686 - 68931 310 ## COG1977 Molybdopterin converting factor, small subunit 65 39 Op 3 11/0.000 - CDS 68924 - 69409 682 ## COG0315 Molybdenum cofactor biosynthesis enzyme 66 39 Op 4 6/0.182 - CDS 69412 - 69924 586 ## COG0521 Molybdopterin biosynthesis enzymes 67 39 Op 5 . - CDS 69946 - 70935 709 ## COG2896 Molybdenum cofactor biosynthesis enzyme - Prom 71085 - 71144 5.0 + Prom 71120 - 71179 3.7 68 40 Tu 1 . + CDS 71332 - 72240 912 ## COG0391 Uncharacterized conserved protein + Term 72370 - 72406 2.4 69 41 Tu 1 . - CDS 72432 - 74453 2265 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 74504 - 74563 6.9 - Term 74833 - 74875 1.1 70 42 Op 1 9/0.000 - CDS 75032 - 75709 413 ## COG0132 Dethiobiotin synthetase 71 42 Op 2 6/0.182 - CDS 75702 - 76457 529 ## COG0500 SAM-dependent methyltransferases 72 42 Op 3 12/0.000 - CDS 76444 - 77598 978 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 73 42 Op 4 . - CDS 77595 - 78635 1216 ## COG0502 Biotin synthase and related enzymes - Prom 78679 - 78738 3.2 + Prom 78629 - 78688 3.9 74 43 Op 1 4/0.455 + CDS 78779 - 80011 1243 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 75 43 Op 2 1/0.864 + CDS 80070 - 80546 479 ## COG1881 Phospholipid-binding protein + Prom 80591 - 80650 3.5 76 44 Tu 1 . + CDS 80698 - 81981 1239 ## COG4677 Pectin methylesterase - Term 82144 - 82198 7.3 77 45 Tu 1 . - CDS 82215 - 84476 2278 ## COG1048 Aconitase A - Prom 84512 - 84571 4.7 78 46 Op 1 3/0.636 - CDS 84659 - 86092 1750 ## COG0471 Di- and tricarboxylate transporters 79 46 Op 2 . - CDS 86168 - 86362 128 ## COG2828 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|223713568|gb|ACDM01000030.1| GENE 1 20 - 556 479 178 aa, chain - ## HITS:1 COG:ybjK KEGG:ns NR:ns ## COG: ybjK COG3226 # Protein_GI_number: 16128814 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 178 1 178 178 344 100.0 6e-95 MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAF SSFTEIMSRQYQAFFSDVSDAPGACQAITDMIYSSQVATPDNMELMYQLYALASRKPLLK TVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTDRKPLSREEILRMVERVAG >gi|223713568|gb|ACDM01000030.1| GENE 2 640 - 1848 1062 402 aa, chain + ## HITS:1 COG:ybjJ KEGG:ns NR:ns ## COG: ybjJ COG0477 # Protein_GI_number: 16128813 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 402 1 402 402 663 99.0 0 MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSVSIAEMGGVLFGLSIGS MSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTSPLLFAVGLGVFGASFGSA EVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMALTAFGVPATVHILLAALVGI APIYIAIQAIPDGTGKNAADGTQHGEKGVPFYRDIQLLLIGVVVLAIAFAEGSANDWLPL LMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFIDRYSRVAVVRASALMGALGIGLIIF VDSAWVAGVSVVLWGLGASLGFPLTISAASDTGPDAPTRVSVVATTGYLAFLVGPPLLGY LGEHYGLRSAMLVVLALVILAAIVAKAVAKPDTKTQTAMENS >gi|223713568|gb|ACDM01000030.1| GENE 3 1848 - 2663 838 271 aa, chain + ## HITS:1 COG:ybjI KEGG:ns NR:ns ## COG: ybjI COG0561 # Protein_GI_number: 16128812 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 10 271 1 262 262 520 100.0 1e-147 MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIAN EIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDD AMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGN GSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVV AAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ >gi|223713568|gb|ACDM01000030.1| GENE 4 2755 - 3033 216 92 aa, chain + ## HITS:1 COG:no KEGG:ECO103_0887 NR:ns ## KEGG: ECO103_0887 # Name: ybjH # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 92 3 94 94 127 100.0 9e-29 MKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSVPQAVSVATVPQTVYVAPA PAPAYRPHPYVRHLASVGEGMVIEHQIDDHHH >gi|223713568|gb|ACDM01000030.1| GENE 5 3074 - 4306 1299 410 aa, chain - ## HITS:1 COG:ECs0922 KEGG:ns NR:ns ## COG: ECs0922 COG0477 # Protein_GI_number: 15830176 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 410 1 410 410 721 100.0 0 MQNKLASGARLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTA YLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLC FIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAAL AAISFFGLQRAMPETATRIGEKLSLKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIA QSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLL VAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGMLQMLI FTVGIEISKHAWLNGGNGLFNLFNLVNGILWLSLMVIFLKDKQMGNSHEG >gi|223713568|gb|ACDM01000030.1| GENE 6 4591 - 5187 522 198 aa, chain + ## HITS:1 COG:ybjG KEGG:ns NR:ns ## COG: ybjG COG0671 # Protein_GI_number: 16128809 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli K12 # 1 198 1 198 198 356 100.0 2e-98 MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAVVLWLWGLTAQRQLVIKI AIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFPSDHGTVIFTFALAFLCWH RLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIGCLSAQIIWQAMGHKLYQRLQ SWYRVCFALPIRKGWVRD >gi|223713568|gb|ACDM01000030.1| GENE 7 5245 - 6003 671 252 aa, chain + ## HITS:1 COG:ECs0920 KEGG:ns NR:ns ## COG: ECs0920 COG1349 # Protein_GI_number: 15830174 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 528 100.0 1e-150 METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEP RSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAV CYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSK GATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV KYAQTQRIKLMY >gi|223713568|gb|ACDM01000030.1| GENE 8 6050 - 7273 1265 407 aa, chain - ## HITS:1 COG:dacC KEGG:ns NR:ns ## COG: dacC COG1686 # Protein_GI_number: 16128807 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli K12 # 8 407 1 400 400 795 100.0 0 MDTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVL AEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFL KPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH GLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDG MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKP DATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGT IDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFHQWFGSWFS >gi|223713568|gb|ACDM01000030.1| GENE 9 7499 - 8125 660 208 aa, chain + ## HITS:1 COG:ECs0918 KEGG:ns NR:ns ## COG: ECs0918 COG0625 # Protein_GI_number: 15830172 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1 208 3 210 210 400 100.0 1e-112 MITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDE SDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRT PPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFGVGDIAIAPFIYNLFNVGLTW TPRPNLQRWYQQLTERPAVRKVVMIPVS >gi|223713568|gb|ACDM01000030.1| GENE 10 8122 - 9093 867 323 aa, chain - ## HITS:1 COG:ECs0917 KEGG:ns NR:ns ## COG: ECs0917 COG2133 # Protein_GI_number: 15830171 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose/sorbosone dehydrogenases # Organism: Escherichia coli O157:H7 # 1 323 49 371 371 650 100.0 0 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENN QRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNAL WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSP AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG PDGYLYVLTDESSGELLKVSPRN >gi|223713568|gb|ACDM01000030.1| GENE 11 9348 - 9731 224 127 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_0907 NR:ns ## KEGG: EcE24377A_0907 # Name: bssR # Def: biofilm formation regulatory protein BssR # Organism: E.coli_E24377A # Pathway: not_defined # 1 127 12 138 138 226 100.0 2e-58 MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRL NLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQK HAMLEKA >gi|223713568|gb|ACDM01000030.1| GENE 12 9944 - 11269 1844 441 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|183179613|ref|ZP_02957824.1| conserved hypothetical protein [Vibrio cholerae MZO-3] # 9 439 34 464 470 714 77 0.0 MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAV QESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKP KHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKR LVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYP YPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTL RSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERW NRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKP GDILRVKVEHADEYDLWGSRV >gi|223713568|gb|ACDM01000030.1| GENE 13 11316 - 12644 1035 442 aa, chain - ## HITS:1 COG:yliF_2 KEGG:ns NR:ns ## COG: yliF_2 COG2199 # Protein_GI_number: 16128802 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 261 442 1 182 182 370 100.0 1e-102 MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVA IDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQ VVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSL FKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVA VISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDL TKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPV DKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERL KMLADERLYKSKKNGRAQISWQ >gi|223713568|gb|ACDM01000030.1| GENE 14 12652 - 15000 1584 782 aa, chain - ## HITS:1 COG:yliE_2 KEGG:ns NR:ns ## COG: yliE_2 COG2200 # Protein_GI_number: 16128801 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 526 782 1 257 257 531 100.0 1e-150 MLSLYEKIKIRLIILFLLAALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKD IERSALTLKDSLYLLKNTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVV YHQEQVNGPLVDESGRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLH INGKDHDLLAVDKIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYN SEGNYNIIDSVDTEYIEKTSAVPNNALFEIYFYYPGGNLLNASDKLFYLPFAFIIIVLLV VYLMTTRVFRRQFSEMTELVNTLAFLPDSTDQIEALKIREGDAKEIISIKNSIAEMKDAE IERSNKLLSLISYDQESGFIKNMAIIESNNNQYLAVGIIKLCGLEAVEAVFGVDERNKIV RKLCQRIAEKYAQCCDIVTFNADLYLLLCRENVQTFTRKIAMVNDFDSSFGYRNLRIHKS AICEPLQGENAWSYAEKLKLAISSIRDHMFSEFIFCDDAKLNEIEENIWIARNIRHAMEI GELFLVYQPIVDINTRAILGAEALCRWVSAERGIISPLKFITIAEDIGFINELGYQIIKT AMGEFRHFSQRASLKDDFLLHINVSPWQLNEPHFHERFTTIMKENGLKANSLCVEITETV IERINEHFYLNIEQLRKQGVRISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAG KIVRIIFDLARYNRIPVIAEGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLV KE >gi|223713568|gb|ACDM01000030.1| GENE 15 15178 - 16089 810 303 aa, chain - ## HITS:1 COG:yliD KEGG:ns NR:ns ## COG: yliD COG1173 # Protein_GI_number: 16128800 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1 303 1 303 303 563 99.0 1e-160 MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWI APYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGT LLGLLTGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFA RLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASL SFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK IKG >gi|223713568|gb|ACDM01000030.1| GENE 16 16092 - 17012 983 306 aa, chain - ## HITS:1 COG:yliC KEGG:ns NR:ns ## COG: yliC COG0601 # Protein_GI_number: 16128799 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli K12 # 1 306 1 306 306 563 100.0 1e-160 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTL GAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAIN PAIRYK >gi|223713568|gb|ACDM01000030.1| GENE 17 17030 - 18568 1653 512 aa, chain - ## HITS:1 COG:yliB KEGG:ns NR:ns ## COG: yliB COG0747 # Protein_GI_number: 16128798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 512 1 512 512 992 100.0 0 MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQ GLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPA NHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGF YPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQF AFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVK VAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTA QKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWAL SPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPL VVEKLVSAHSKNLTGFWIMPDTGFSFEDADLQ >gi|223713568|gb|ACDM01000030.1| GENE 18 18588 - 20459 841 623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 12 572 8 528 563 328 35 6e-89 MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTAL ALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPV FTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA MALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL VMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQAP PIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESG SGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTI GDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG QIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAV SLQCVGPGHYVAQPQSEYAFMRR >gi|223713568|gb|ACDM01000030.1| GENE 19 20446 - 21411 1047 321 aa, chain - ## HITS:1 COG:ybiK KEGG:ns NR:ns ## COG: ybiK COG1446 # Protein_GI_number: 16128796 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Escherichia coli K12 # 1 321 1 321 321 581 99.0 1e-166 MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLL EECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHV MMIGEGAENFAFARGMERVSPEIFSTPLRYEQLLAARKEGATVLDHSGAPLDEKQKMGTV GAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRAL AAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWG YAGDTPTTGIYREKGDTVATQ >gi|223713568|gb|ACDM01000030.1| GENE 20 21615 - 22850 1259 411 aa, chain + ## HITS:1 COG:moeA KEGG:ns NR:ns ## COG: moeA COG0303 # Protein_GI_number: 16128795 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Escherichia coli K12 # 1 411 1 411 411 795 100.0 0 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL >gi|223713568|gb|ACDM01000030.1| GENE 21 22850 - 23599 863 249 aa, chain + ## HITS:1 COG:moeB KEGG:ns NR:ns ## COG: moeB COG0476 # Protein_GI_number: 16128794 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Escherichia coli K12 # 1 249 1 249 249 490 100.0 1e-138 MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTL LDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLF GENALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMR NPGCEVCGQ >gi|223713568|gb|ACDM01000030.1| GENE 22 23675 - 24343 842 222 aa, chain - ## HITS:1 COG:mipB KEGG:ns NR:ns ## COG: mipB COG0176 # Protein_GI_number: 16128793 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli K12 # 1 222 23 244 244 401 100.0 1e-112 MVMELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFA QVMATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGL LSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLL AGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFGRTSI >gi|223713568|gb|ACDM01000030.1| GENE 23 24468 - 25367 1009 299 aa, chain + ## HITS:1 COG:ybiY KEGG:ns NR:ns ## COG: ybiY COG1180 # Protein_GI_number: 16128792 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1 299 10 308 308 600 100.0 1e-171 MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDLLYDARLCLEGCELCAK AAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGEVKSVEEIMTTVLRDKPFY DRSGGGLTLSGGEPFMQPEMAMALLQASHEAGIHTAVETCLHVPWKYIAPSLPYIDLFLA DLKHVADAPFKQWTDGNAARVLDNLKKLAAAGKKIIIRVPLIQGFNADETSVKAITDFAA DELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLDAPELLDFAQQYACQKGLTATLRG >gi|223713568|gb|ACDM01000030.1| GENE 24 25373 - 27805 2915 810 aa, chain + ## HITS:1 COG:ybiW KEGG:ns NR:ns ## COG: ybiW COG1882 # Protein_GI_number: 16128791 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1 810 1 810 810 1700 99.0 0 MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHLDKPIPVRRALALAHHL ANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFAVSEENKRVL HEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMTSGDAHLAVNFPLLLEKGLDG LREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSEHIERFAALAREMAATETRESRR DELLAMAENCDLIAHQPPQTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRD VELNQTLDREHAIEMLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPM DAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVI PEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAALEGGHDATSGK VFLPQEKALSAGNFNNFDEVMDAWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVD DCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFD GLTHEQLRQRLINGAPKYGNDDDTVDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAG TSSISANVPFGAQTMATPDGRKAHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGG VLLNQKLNPATLENESDKQKLMILLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDL VVRVAGYSAFFTALSPDAQDDIIARTEHML >gi|223713568|gb|ACDM01000030.1| GENE 25 27951 - 28766 922 271 aa, chain + ## HITS:1 COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1 271 1 271 271 546 100.0 1e-155 MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKD EISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPE AFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGF GFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIK QIARYATDDNNHEGALNVIQAVLDNTSPFNS >gi|223713568|gb|ACDM01000030.1| GENE 26 28918 - 30183 1057 421 aa, chain + ## HITS:1 COG:no KEGG:B21_00805 NR:ns ## KEGG: B21_00805 # Name: ybiU # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 421 1 421 421 872 100.0 0 MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAV WPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYK GPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDV SVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPED ELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVM YIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGMD V >gi|223713568|gb|ACDM01000030.1| GENE 27 30424 - 31992 2057 522 aa, chain - ## HITS:1 COG:ECs0897 KEGG:ns NR:ns ## COG: ECs0897 COG0488 # Protein_GI_number: 15830151 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 522 9 530 530 1039 100.0 0 MQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGK LRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDG YSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDI DTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQAR ERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIR FEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGD LQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFS QDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTL IFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE >gi|223713568|gb|ACDM01000030.1| GENE 28 32235 - 33155 1097 306 aa, chain + ## HITS:1 COG:ECs0896 KEGG:ns NR:ns ## COG: ECs0896 COG1376 # Protein_GI_number: 15830150 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 599 100.0 1e-171 MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEY QMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTV IVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPM GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSG MPVRLN >gi|223713568|gb|ACDM01000030.1| GENE 29 33214 - 34332 1044 372 aa, chain - ## HITS:1 COG:ybiR KEGG:ns NR:ns ## COG: ybiR COG0471 # Protein_GI_number: 16128786 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1 372 1 372 372 618 100.0 1e-177 MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVEL SGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWC CFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRV VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPST ILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL VGYVLLVILPAN >gi|223713568|gb|ACDM01000030.1| GENE 30 34329 - 34796 550 155 aa, chain - ## HITS:1 COG:ybiQ KEGG:ns NR:ns ## COG: ybiQ COG1321 # Protein_GI_number: 16128785 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Escherichia coli K12 # 1 155 1 155 155 268 100.0 2e-72 MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDM AARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLG VSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK >gi|223713568|gb|ACDM01000030.1| GENE 31 34982 - 35110 71 42 aa, chain + ## HITS:1 COG:no KEGG:SbBS512_E2532 NR:ns ## KEGG: SbBS512_E2532 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1 42 1 42 42 69 97.0 3e-11 MNEFKRCMRVFSHSPFKVRLMLLSMLCDMVNNKPQQDKPSDK >gi|223713568|gb|ACDM01000030.1| GENE 32 35382 - 36965 1522 527 aa, chain + ## HITS:1 COG:ybiP KEGG:ns NR:ns ## COG: ybiP COG2194 # Protein_GI_number: 16128783 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 527 1 527 527 1073 100.0 0 MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRV QKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIF ALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFA KDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWD NTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFS NQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIV LHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYF SDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQW TGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP >gi|223713568|gb|ACDM01000030.1| GENE 33 37014 - 37529 561 171 aa, chain - ## HITS:1 COG:ECs0892 KEGG:ns NR:ns ## COG: ECs0892 COG3637 # Protein_GI_number: 15830146 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Opacity protein and related surface antigens # Organism: Escherichia coli O157:H7 # 1 171 1 171 171 301 100.0 4e-82 MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPL GVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPT YKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF >gi|223713568|gb|ACDM01000030.1| GENE 34 37882 - 38769 953 295 aa, chain + ## HITS:1 COG:ECs0891 KEGG:ns NR:ns ## COG: ECs0891 COG5006 # Protein_GI_number: 15830145 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Escherichia coli O157:H7 # 1 295 1 295 295 481 100.0 1e-135 MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK PWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV DFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVA IGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGT LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN >gi|223713568|gb|ACDM01000030.1| GENE 35 39068 - 39571 641 167 aa, chain + ## HITS:1 COG:ECs0890 KEGG:ns NR:ns ## COG: ECs0890 COG0783 # Protein_GI_number: 15830144 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 305 100.0 3e-83 MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFI AVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKE LADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE >gi|223713568|gb|ACDM01000030.1| GENE 36 39975 - 40721 1005 248 aa, chain + ## HITS:1 COG:ECs0889 KEGG:ns NR:ns ## COG: ECs0889 COG0834 # Protein_GI_number: 15830143 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 462 100.0 1e-130 MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKE LKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANN NDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDT PNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYK KWFGTEPK >gi|223713568|gb|ACDM01000030.1| GENE 37 40860 - 41519 944 219 aa, chain + ## HITS:1 COG:ECs0888 KEGG:ns NR:ns ## COG: ECs0888 COG0765 # Protein_GI_number: 15830142 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 373 100.0 1e-103 MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIE VIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGF REAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKIL >gi|223713568|gb|ACDM01000030.1| GENE 38 41516 - 42238 595 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 233 47 2e-60 MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLAREL LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQRLQEFLQHVS >gi|223713568|gb|ACDM01000030.1| GENE 39 42499 - 44724 2041 741 aa, chain + ## HITS:1 COG:ECs0886_2 KEGG:ns NR:ns ## COG: ECs0886_2 COG0668 # Protein_GI_number: 15830140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 431 741 1 311 311 582 100.0 1e-166 MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQKKAAYGALADVLDNDT SRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEVSRHYGEALSARFGQLYRN ITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCALPLYRKMGQWARQKNRERSNW LQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRTIAFQQSLFLNAFALIEFFKAVL RLIFCPNVAELRPFTIQDESARYWSRRLSWLSSLIGYGLIVAVPIISNQVNVQIGALANV IIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLAFFSLFIRAFALVWHWLASAYFIVLFF FSLFDPGNSLKFMMGATVRSLAIIGIAAFVSGMFSRWLAKTITLSPHTQRNYPELQKRLN GWLSAALKTARILTVCVAVMLLLSAWGLFDFWNWLQNGAGQKTVDILIRIALILFFSAVG WTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPL LAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVR QDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR GLIIGEPNFAGIVGLSNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTY QVLPAPGATPAEPLPPGEPTL >gi|223713568|gb|ACDM01000030.1| GENE 40 44721 - 45647 779 308 aa, chain - ## HITS:1 COG:ybiN KEGG:ns NR:ns ## COG: ybiN COG3129 # Protein_GI_number: 16128775 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Escherichia coli K12 # 1 308 28 335 335 639 100.0 0 MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALL AHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPL IGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRRQKESGAIFNGIIHKNEQYD ATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEES KGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFMNDEQR RRFVNRQR >gi|223713568|gb|ACDM01000030.1| GENE 41 45923 - 46183 241 86 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_0844 NR:ns ## KEGG: ECIAI1_0844 # Name: ybiM # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 86 49 134 134 163 100.0 1e-39 MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAR EQGAKGYVINSAGGNDQMFGTATIYK >gi|223713568|gb|ACDM01000030.1| GENE 42 46448 - 48730 2038 760 aa, chain + ## HITS:1 COG:fiu KEGG:ns NR:ns ## COG: fiu COG4774 # Protein_GI_number: 16128773 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for monomeric catechols # Organism: Escherichia coli K12 # 1 760 1 760 760 1392 99.0 0 MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTLVVEASTPSLYAPQQSA DPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDAIYM RGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRND SGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVA FGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDS DYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWT WSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNI YHPDSSIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATA CGGSGRGAITCPTGVAKGSPVTTVDTAKSGNLMNWKAGALNHLTENGNVYINYAVSQQPP GGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQN DDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPE HAFTLWSQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLD FQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF >gi|223713568|gb|ACDM01000030.1| GENE 43 48772 - 49449 688 225 aa, chain + ## HITS:1 COG:ybiX KEGG:ns NR:ns ## COG: ybiX COG3128 # Protein_GI_number: 16128772 # Func_class: S Function unknown # Function: Uncharacterized iron-regulated protein # Organism: Escherichia coli K12 # 1 225 13 237 237 459 100.0 1e-129 MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEV LNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFL SDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIR DDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI >gi|223713568|gb|ACDM01000030.1| GENE 44 49523 - 49789 323 88 aa, chain + ## HITS:1 COG:ybiI KEGG:ns NR:ns ## COG: ybiI COG1734 # Protein_GI_number: 16128771 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Escherichia coli K12 # 1 88 1 88 88 158 100.0 3e-39 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC IHCQQEKDLQKPAYTGYNRRGSKDSQLR >gi|223713568|gb|ACDM01000030.1| GENE 45 50054 - 50314 280 86 aa, chain + ## HITS:1 COG:no KEGG:EC55989_0846 NR:ns ## KEGG: EC55989_0846 # Name: ybiJ # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 86 1 86 86 82 100.0 3e-15 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAA AAGASGYSITSATNNNKLSGTAVIYK >gi|223713568|gb|ACDM01000030.1| GENE 46 50543 - 51628 1335 361 aa, chain - ## HITS:1 COG:ybiC KEGG:ns NR:ns ## COG: ybiC COG2055 # Protein_GI_number: 16128769 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1 361 1 361 361 729 100.0 0 MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSW SQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHH IGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLD YATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKA SPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLA S >gi|223713568|gb|ACDM01000030.1| GENE 47 51769 - 52731 968 320 aa, chain - ## HITS:1 COG:ybiB KEGG:ns NR:ns ## COG: ybiB COG0547 # Protein_GI_number: 16128768 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Escherichia coli K12 # 1 320 1 320 320 644 100.0 0 MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEML GFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSED PTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNS AHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCP QINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCL VATGEAATISDGLARVNQAF >gi|223713568|gb|ACDM01000030.1| GENE 48 52759 - 54909 2075 716 aa, chain - ## HITS:1 COG:dinG KEGG:ns NR:ns ## COG: dinG COG1199 # Protein_GI_number: 16128767 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Escherichia coli K12 # 1 716 1 716 716 1437 100.0 0 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGK TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVC PRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAID DDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDP KNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLR GLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWA TREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEK AGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVL FASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRS HGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR >gi|223713568|gb|ACDM01000030.1| GENE 49 55062 - 55511 434 149 aa, chain + ## HITS:1 COG:ybiA KEGG:ns NR:ns ## COG: ybiA COG3236 # Protein_GI_number: 16128766 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 149 12 160 160 290 100.0 8e-79 MQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTWPTSEHYFQAQKFLDEKYREEIRRVSSP MVAARMGRDRSKPLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDA YWGDGGHGKGKNRLGYLLMELREQLAIEK >gi|223713568|gb|ACDM01000030.1| GENE 50 55743 - 57107 1433 454 aa, chain - ## HITS:1 COG:rhlE KEGG:ns NR:ns ## COG: rhlE COG0513 # Protein_GI_number: 16128765 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1 442 1 442 454 778 100.0 0 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ >gi|223713568|gb|ACDM01000030.1| GENE 51 57336 - 58007 734 223 aa, chain + ## HITS:1 COG:ECs0874 KEGG:ns NR:ns ## COG: ECs0874 COG1309 # Protein_GI_number: 15830128 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 223 5 227 227 437 100.0 1e-123 MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYL ACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK FISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFR LGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL >gi|223713568|gb|ACDM01000030.1| GENE 52 58010 - 59005 1289 331 aa, chain + ## HITS:1 COG:Z1015 KEGG:ns NR:ns ## COG: Z1015 COG0845 # Protein_GI_number: 15800546 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 EDL933 # 1 331 2 332 332 552 99.0 1e-157 MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVD EGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQ AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDI AQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLV YRLRIVVTDADDALRQGMPVTVQFGDEAGHE >gi|223713568|gb|ACDM01000030.1| GENE 53 58998 - 60734 343 578 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 330 549 12 233 318 136 34 3e-31 MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPD SGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFA RLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQM VHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHE GNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAF IDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGL LGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVE QNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPD ILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIAS GTPDGLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE >gi|223713568|gb|ACDM01000030.1| GENE 54 60727 - 61860 1442 377 aa, chain + ## HITS:1 COG:ECs0871 KEGG:ns NR:ns ## COG: ECs0871 COG0842 # Protein_GI_number: 15830125 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1 377 1 377 377 682 100.0 0 MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILL EQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRGLVVIPVDFAEQMERANAT APIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQ HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGML AMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAA FLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIAS AVMFIGLTWLKTKRRLD >gi|223713568|gb|ACDM01000030.1| GENE 55 61871 - 62977 1190 368 aa, chain + ## HITS:1 COG:ECs0870 KEGG:ns NR:ns ## COG: ECs0870 COG0842 # Protein_GI_number: 15830124 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1 368 1 368 368 686 100.0 0 MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEH SVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLI LDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAY AMFRRKVM >gi|223713568|gb|ACDM01000030.1| GENE 56 62939 - 63349 485 136 aa, chain - ## HITS:1 COG:no KEGG:G2583_1019 NR:ns ## KEGG: G2583_1019 # Name: ybhQ # Def: inner membrane protein YbhQ # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 136 1 136 136 215 100.0 4e-55 MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQR HPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLA KDKKLHHLTSKHRVRR >gi|223713568|gb|ACDM01000030.1| GENE 57 63482 - 64243 616 253 aa, chain + ## HITS:1 COG:ECs0868 KEGG:ns NR:ns ## COG: ECs0868 COG3568 # Protein_GI_number: 15830122 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Escherichia coli O157:H7 # 1 253 1 253 253 520 100.0 1e-147 MPDQTQQFSFKVLTINIHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLH VENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVDGAEKR GVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVLVAGDFNDWR QKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLRTWRH LSDHAPLSAEIHL >gi|223713568|gb|ACDM01000030.1| GENE 58 64240 - 65481 1174 413 aa, chain + ## HITS:1 COG:ECs0867 KEGG:ns NR:ns ## COG: ECs0867 COG1502 # Protein_GI_number: 15830121 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Escherichia coli O157:H7 # 1 413 1 413 413 835 100.0 0 MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQ RGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVID ARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRH HKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHAL RKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHW ATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNL TKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP >gi|223713568|gb|ACDM01000030.1| GENE 59 65481 - 66437 1161 318 aa, chain + ## HITS:1 COG:ybhN KEGG:ns NR:ns ## COG: ybhN COG0392 # Protein_GI_number: 16128756 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1 318 1 318 318 530 100.0 1e-150 MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVV SYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPG STITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLW FCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVL LVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICY LLLESQAKKLRAKNEAAM >gi|223713568|gb|ACDM01000030.1| GENE 60 66473 - 67186 298 237 aa, chain - ## HITS:1 COG:ybhM KEGG:ns NR:ns ## COG: ybhM COG0670 # Protein_GI_number: 16128755 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1 237 1 237 237 417 99.0 1e-116 MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYLEITATKYDSPPMYVAI GLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLIS MLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWVISCLMIVLWSGIISHGR NKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH >gi|223713568|gb|ACDM01000030.1| GENE 61 67213 - 67305 63 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPYGRAEAFSVSINAKVFCMRGFKFIDGEY >gi|223713568|gb|ACDM01000030.1| GENE 62 67391 - 68095 737 234 aa, chain - ## HITS:1 COG:ybhL KEGG:ns NR:ns ## COG: ybhL COG0670 # Protein_GI_number: 16128754 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1 234 1 234 234 368 100.0 1e-102 MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNRVFLI GLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSSIFIVYTAASIASTFVVTA GMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVG LTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR >gi|223713568|gb|ACDM01000030.1| GENE 63 68232 - 68684 631 150 aa, chain - ## HITS:1 COG:moaE KEGG:ns NR:ns ## COG: moaE COG0314 # Protein_GI_number: 16128753 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Escherichia coli K12 # 1 150 1 150 150 291 100.0 3e-79 MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTE KALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKT RAPFWKREATPEGDRWVEARESDQQAAKRW >gi|223713568|gb|ACDM01000030.1| GENE 64 68686 - 68931 310 81 aa, chain - ## HITS:1 COG:moaD KEGG:ns NR:ns ## COG: moaD COG1977 # Protein_GI_number: 16128752 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Escherichia coli K12 # 1 81 1 81 81 149 100.0 1e-36 MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLV SFDHPLTDGDEVAFFPPVTGG >gi|223713568|gb|ACDM01000030.1| GENE 65 68924 - 69409 682 161 aa, chain - ## HITS:1 COG:ECs0861 KEGG:ns NR:ns ## COG: ECs0861 COG0315 # Protein_GI_number: 15830115 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Escherichia coli O157:H7 # 1 161 1 161 161 296 100.0 9e-81 MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARI AGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAAS VAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEADD >gi|223713568|gb|ACDM01000030.1| GENE 66 69412 - 69924 586 170 aa, chain - ## HITS:1 COG:ECs0860 KEGG:ns NR:ns ## COG: ECs0860 COG0521 # Protein_GI_number: 15830114 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Escherichia coli O157:H7 # 1 170 1 170 170 341 100.0 4e-94 MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQ VSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQ SRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK >gi|223713568|gb|ACDM01000030.1| GENE 67 69946 - 70935 709 329 aa, chain - ## HITS:1 COG:ECs0859 KEGG:ns NR:ns ## COG: ECs0859 COG2896 # Protein_GI_number: 15830113 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Escherichia coli O157:H7 # 1 329 1 329 329 680 99.0 0 MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFA SLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVASWRDAGLTGI NVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNW IQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHP DYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARI SAALREKKQTHFLHQNNTGITQNLSYIGG >gi|223713568|gb|ACDM01000030.1| GENE 68 71332 - 72240 912 302 aa, chain + ## HITS:1 COG:ybhK KEGG:ns NR:ns ## COG: ybhK COG0391 # Protein_GI_number: 16128748 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 302 1 302 302 548 100.0 1e-156 MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAW GDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRN LLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAI NEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKL AIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQA LG >gi|223713568|gb|ACDM01000030.1| GENE 69 72432 - 74453 2265 673 aa, chain - ## HITS:1 COG:ECs0857 KEGG:ns NR:ns ## COG: ECs0857 COG0556 # Protein_GI_number: 15830111 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Escherichia coli O157:H7 # 1 673 1 673 673 1265 100.0 0 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD QLHQLRELFIAAS >gi|223713568|gb|ACDM01000030.1| GENE 70 75032 - 75709 413 225 aa, chain - ## HITS:1 COG:bioD KEGG:ns NR:ns ## COG: bioD COG0132 # Protein_GI_number: 16128746 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Escherichia coli K12 # 1 225 1 225 225 433 100.0 1e-121 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP PGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL >gi|223713568|gb|ACDM01000030.1| GENE 71 75702 - 76457 529 251 aa, chain - ## HITS:1 COG:bioC KEGG:ns NR:ns ## COG: bioC COG0500 # Protein_GI_number: 16128745 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 251 1 251 251 460 100.0 1e-130 MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHW RERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLS TALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHY QHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLT YHLFLGVIARE >gi|223713568|gb|ACDM01000030.1| GENE 72 76444 - 77598 978 384 aa, chain - ## HITS:1 COG:bioF KEGG:ns NR:ns ## COG: bioF COG0156 # Protein_GI_number: 16128744 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Escherichia coli K12 # 1 384 1 384 384 679 100.0 0 MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIR AWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMM AKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSM DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALIT RFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARL RLTLTAAHEMQDIDRLLEVLHGNG >gi|223713568|gb|ACDM01000030.1| GENE 73 77595 - 78635 1216 346 aa, chain - ## HITS:1 COG:bioB KEGG:ns NR:ns ## COG: bioB COG0502 # Protein_GI_number: 16128743 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Escherichia coli K12 # 1 346 1 346 346 694 100.0 0 MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK DLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL >gi|223713568|gb|ACDM01000030.1| GENE 74 78779 - 80011 1243 410 aa, chain + ## HITS:1 COG:bioA KEGG:ns NR:ns ## COG: bioA COG0161 # Protein_GI_number: 16128742 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Escherichia coli K12 # 1 410 20 429 429 830 100.0 0 MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLT FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA ANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL QKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ >gi|223713568|gb|ACDM01000030.1| GENE 75 80070 - 80546 479 158 aa, chain + ## HITS:1 COG:ybhB KEGG:ns NR:ns ## COG: ybhB COG1881 # Protein_GI_number: 16128741 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Escherichia coli K12 # 1 158 1 158 158 314 100.0 4e-86 MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSG WWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTV HALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS >gi|223713568|gb|ACDM01000030.1| GENE 76 80698 - 81981 1239 427 aa, chain + ## HITS:1 COG:ybhC KEGG:ns NR:ns ## COG: ybhC COG4677 # Protein_GI_number: 16128740 # Func_class: G Carbohydrate transport and metabolism # Function: Pectin methylesterase # Organism: Escherichia coli K12 # 1 427 1 427 427 823 100.0 0 MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFA SLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPG EYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWY MYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEF RVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIR DSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK VVAEAKK >gi|223713568|gb|ACDM01000030.1| GENE 77 82215 - 84476 2278 753 aa, chain - ## HITS:1 COG:ybhJ KEGG:ns NR:ns ## COG: ybhJ COG1048 # Protein_GI_number: 16128739 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1 753 9 761 761 1553 100.0 0 MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDS LASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGG IFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDI DYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSV DVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIA LPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGC SGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAF CGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT SASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLK VCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAG NVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIA EEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAP VTEITLYMESLTAEEREIIKAGSLINFNKNRQM >gi|223713568|gb|ACDM01000030.1| GENE 78 84659 - 86092 1750 477 aa, chain - ## HITS:1 COG:ybhI KEGG:ns NR:ns ## COG: ybhI COG0471 # Protein_GI_number: 16128738 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1 477 1 477 477 798 100.0 0 MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIA VAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKI GNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLM MSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVI YTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAI VVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFD GHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYG GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML >gi|223713568|gb|ACDM01000030.1| GENE 79 86168 - 86362 128 64 aa, chain - ## HITS:1 COG:ybhH KEGG:ns NR:ns ## COG: ybhH COG2828 # Protein_GI_number: 16128737 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 64 287 350 350 128 100.0 3e-30 SSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGE VYLP Prediction of potential genes in microbial genomes Time: Mon May 16 18:56:43 2011 Seq name: gi|223713567|gb|ACDM01000031.1| Escherichia sp. 4_1_40B cont1.31, whole genome shotgun sequence Length of sequence - 18713 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 104 - 937 516 ## COG0583 Transcriptional regulator + Term 1053 - 1099 5.0 - Term 930 - 965 6.4 2 2 Tu 1 . - CDS 978 - 1973 1008 ## COG2706 3-carboxymuconate cyclase + Prom 1964 - 2023 6.0 3 3 Tu 1 . + CDS 2128 - 2946 934 ## COG0561 Predicted hydrolases of the HAD superfamily 4 4 Op 1 13/0.000 - CDS 2947 - 4005 1179 ## COG4148 ABC-type molybdate transport system, ATPase component 5 4 Op 2 23/0.000 - CDS 4008 - 4697 653 ## COG4149 ABC-type molybdate transport system, permease component 6 4 Op 3 . - CDS 4697 - 5470 875 ## COG0725 ABC-type molybdate transport system, periplasmic component - Prom 5562 - 5621 4.3 - Term 5595 - 5630 4.5 7 5 Tu 1 . - CDS 5637 - 5786 112 ## ECSE_0815 hypothetical protein - Prom 5808 - 5867 6.1 + Prom 5734 - 5793 3.0 8 6 Op 1 4/0.600 + CDS 5915 - 6703 840 ## COG2005 N-terminal domain of molybdenum-binding protein 9 6 Op 2 . + CDS 6771 - 8243 177 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Prom 8323 - 8382 6.9 10 7 Op 1 3/0.800 + CDS 8504 - 9520 1103 ## COG1087 UDP-glucose 4-epimerase 11 7 Op 2 8/0.000 + CDS 9530 - 10576 829 ## COG1085 Galactose-1-phosphate uridylyltransferase 12 7 Op 3 6/0.000 + CDS 10580 - 11728 1100 ## COG0153 Galactokinase 13 7 Op 4 4/0.600 + CDS 11722 - 12762 1117 ## COG2017 Galactose mutarotase and related enzymes + Term 12769 - 12797 1.4 + Prom 12870 - 12929 4.1 14 8 Tu 1 . + CDS 12964 - 13716 1067 ## COG0588 Phosphoglycerate mutase 1 + Term 13737 - 13777 7.1 - Term 13729 - 13761 2.8 15 9 Tu 1 . - CDS 13874 - 14926 1014 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 14967 - 15026 6.1 16 10 Tu 1 . + CDS 15242 - 15622 355 ## B21_00695 hypothetical protein + Term 15644 - 15677 2.1 + Prom 15653 - 15712 6.0 17 11 Tu 1 . + CDS 15736 - 16677 749 ## COG1230 Co/Zn/Cd efflux system component + Term 16686 - 16722 4.7 18 12 Op 1 5/0.600 - CDS 16674 - 17378 635 ## COG3201 Nicotinamide mononucleotide transporter 19 12 Op 2 . - CDS 17431 - 18465 719 ## COG0379 Quinolinate synthase - Prom 18557 - 18616 4.5 Predicted protein(s) >gi|223713567|gb|ACDM01000031.1| GENE 1 104 - 937 516 277 aa, chain + ## HITS:1 COG:ybhD KEGG:ns NR:ns ## COG: ybhD COG0583 # Protein_GI_number: 16128736 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 277 62 338 338 575 99.0 1e-164 MEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACI PTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFT PLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWF YEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLS PAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG >gi|223713567|gb|ACDM01000031.1| GENE 2 978 - 1973 1008 331 aa, chain - ## HITS:1 COG:ybhE KEGG:ns NR:ns ## COG: ybhE COG2706 # Protein_GI_number: 16128735 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Escherichia coli K12 # 1 331 1 331 331 679 100.0 0 MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV LAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS VYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH >gi|223713567|gb|ACDM01000031.1| GENE 3 2128 - 2946 934 272 aa, chain + ## HITS:1 COG:ybhA KEGG:ns NR:ns ## COG: ybhA COG0561 # Protein_GI_number: 16128734 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1 272 1 272 272 555 100.0 1e-158 MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALD TPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGH VIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELG LECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAM GNADDAVKARANIVIGDNTTDSIAQFIYSHLI >gi|223713567|gb|ACDM01000031.1| GENE 4 2947 - 4005 1179 352 aa, chain - ## HITS:1 COG:modC KEGG:ns NR:ns ## COG: modC COG4148 # Protein_GI_number: 16128733 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, ATPase component # Organism: Escherichia coli K12 # 1 352 1 352 352 669 100.0 0 MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGR VLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEP LLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINI PMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVL EHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKV VNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA >gi|223713567|gb|ACDM01000031.1| GENE 5 4008 - 4697 653 229 aa, chain - ## HITS:1 COG:ECs0792 KEGG:ns NR:ns ## COG: ECs0792 COG4149 # Protein_GI_number: 15830046 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 370 100.0 1e-102 MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPV VVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDV KLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRT IPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR >gi|223713567|gb|ACDM01000031.1| GENE 6 4697 - 5470 875 257 aa, chain - ## HITS:1 COG:modA KEGG:ns NR:ns ## COG: modA COG0725 # Protein_GI_number: 16128731 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 257 1 257 257 465 100.0 1e-131 MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSF ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQK DFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGAL ALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYL KGPQAAEIFKRYGFTIK >gi|223713567|gb|ACDM01000031.1| GENE 7 5637 - 5786 112 49 aa, chain - ## HITS:1 COG:no KEGG:ECSE_0815 NR:ns ## KEGG: ECSE_0815 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 49 3 51 51 77 100.0 1e-13 MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH >gi|223713567|gb|ACDM01000031.1| GENE 8 5915 - 6703 840 262 aa, chain + ## HITS:1 COG:ECs0789 KEGG:ns NR:ns ## COG: ECs0789 COG2005 # Protein_GI_number: 15830043 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 451 100.0 1e-127 MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSE HILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISR FSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLI LLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATS LQQGQNVTAYFNADSVIIATLC >gi|223713567|gb|ACDM01000031.1| GENE 9 6771 - 8243 177 490 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 276 465 21 199 311 72 28 2e-12 MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGER QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLA QQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLAS LHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGV QLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNNLSWQVNPGEHWQIVGPNGAGKS TLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVIL SGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP TLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGG LYRYVLTKIY >gi|223713567|gb|ACDM01000031.1| GENE 10 8504 - 9520 1103 338 aa, chain + ## HITS:1 COG:galE KEGG:ns NR:ns ## COG: galE COG1087 # Protein_GI_number: 16128727 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Escherichia coli K12 # 1 338 1 338 338 706 100.0 0 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYW ADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD >gi|223713567|gb|ACDM01000031.1| GENE 11 9530 - 10576 829 348 aa, chain + ## HITS:1 COG:galT KEGG:ns NR:ns ## COG: galT COG1085 # Protein_GI_number: 16128726 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Escherichia coli K12 # 1 348 1 348 348 707 100.0 0 MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVR VTGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLP ELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAE REDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAH VLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY PPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRESGV >gi|223713567|gb|ACDM01000031.1| GENE 12 10580 - 11728 1100 382 aa, chain + ## HITS:1 COG:ECs0785 KEGG:ns NR:ns ## COG: ECs0785 COG0153 # Protein_GI_number: 15830039 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Escherichia coli O157:H7 # 1 382 1 382 382 775 100.0 0 MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRD DRKVRVMAADYENQLDEFSLDAPIVAHENYQWANYVRGVVKHLQLRNNSFGGVDMVISGN VPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISAL GKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQP ALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTVEAASALEQGDLKRMGELMAESHAS MRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGGGFGGCIVALIPEELVPAVQQAVAEQY EAKTGIKETFYVCKPSQGAGQC >gi|223713567|gb|ACDM01000031.1| GENE 13 11722 - 12762 1117 346 aa, chain + ## HITS:1 COG:galM KEGG:ns NR:ns ## COG: galM COG2017 # Protein_GI_number: 16128724 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1 346 1 346 346 711 100.0 0 MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPE CYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVDKPCPVNMTNHVYFNL DGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRK VKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPY ADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE >gi|223713567|gb|ACDM01000031.1| GENE 14 12964 - 13716 1067 250 aa, chain + ## HITS:1 COG:ECs0783 KEGG:ns NR:ns ## COG: ECs0783 COG0588 # Protein_GI_number: 15830037 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Escherichia coli O157:H7 # 1 250 1 250 250 470 100.0 1e-133 MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVL KRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFA VTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVI IAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLKRYYLGNADEIAAKA AAVANQGKAK >gi|223713567|gb|ACDM01000031.1| GENE 15 13874 - 14926 1014 350 aa, chain - ## HITS:1 COG:ECs0782 KEGG:ns NR:ns ## COG: ECs0782 COG0722 # Protein_GI_number: 15830036 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli O157:H7 # 1 350 1 350 350 717 100.0 0 MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGP CSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQIN DGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLS CPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPN YSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVM VESHLVEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKARRG >gi|223713567|gb|ACDM01000031.1| GENE 16 15242 - 15622 355 126 aa, chain + ## HITS:1 COG:no KEGG:B21_00695 NR:ns ## KEGG: B21_00695 # Name: ybgS # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 126 1 126 126 146 100.0 2e-34 MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDN NGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTK TDGTTQ >gi|223713567|gb|ACDM01000031.1| GENE 17 15736 - 16677 749 313 aa, chain + ## HITS:1 COG:ZybgR KEGG:ns NR:ns ## COG: ZybgR COG1230 # Protein_GI_number: 15800461 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Escherichia coli O157:H7 EDL933 # 4 307 2 305 311 529 99.0 1e-150 MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAA LLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVE GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWT GWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVH HVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCH LNEGVSGHSHHHH >gi|223713567|gb|ACDM01000031.1| GENE 18 16674 - 17378 635 234 aa, chain - ## HITS:1 COG:pnuC KEGG:ns NR:ns ## COG: pnuC COG3201 # Protein_GI_number: 16128719 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Escherichia coli K12 # 1 234 6 239 239 391 99.0 1e-109 MQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGIIFFQI QLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSIGLMTV FINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRKYVENW LLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALSH >gi|223713567|gb|ACDM01000031.1| GENE 19 17431 - 18465 719 344 aa, chain - ## HITS:1 COG:nadA KEGG:ns NR:ns ## COG: nadA COG0379 # Protein_GI_number: 16128718 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Escherichia coli K12 # 1 344 4 347 347 693 100.0 0 MFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGG CISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEE FNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGR YVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGST SQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMN GLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG Prediction of potential genes in microbial genomes Time: Mon May 16 18:57:02 2011 Seq name: gi|223713566|gb|ACDM01000032.1| Escherichia sp. 4_1_40B cont1.32, whole genome shotgun sequence Length of sequence - 42014 bp Number of predicted genes - 38, with homology - 38 Number of transcription units - 11, operones - 6 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 3 - 78 94.3 # Val TAC 0 0 - TRNA 214 - 289 99.5 # Lys TTT 0 0 2 1 Op 2 20/0.000 - CDS 1255 - 1776 668 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 3 1 Op 3 8/0.000 - CDS 1811 - 3103 1281 ## COG0823 Periplasmic component of the Tol biopolymer transport system - Prom 3155 - 3214 4.0 4 1 Op 4 8/0.000 - CDS 3236 - 4303 1249 ## COG3064 Membrane protein involved in colicin uptake - Term 4395 - 4451 2.2 5 1 Op 5 30/0.000 - CDS 4566 - 4994 483 ## COG0848 Biopolymer transport protein 6 1 Op 6 13/0.000 - CDS 4998 - 5690 677 ## COG0811 Biopolymer transport proteins 7 1 Op 7 7/0.000 - CDS 5687 - 5977 208 ## COG0824 Predicted thioesterase - Prom 6132 - 6191 3.2 - Term 6184 - 6219 4.3 8 1 Op 8 2/0.600 - CDS 6241 - 6534 252 ## COG3790 Predicted membrane protein 9 1 Op 9 3/0.600 - CDS 6534 - 6647 138 ## COG4890 Predicted outer membrane lipoprotein 10 1 Op 10 31/0.000 - CDS 6662 - 7801 1447 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 11 1 Op 11 . - CDS 7817 - 9385 1742 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 9513 - 9572 7.7 12 2 Op 1 . - CDS 9980 - 10207 74 ## SSON_0684 hypothetical protein 13 2 Op 2 2/0.600 - CDS 10232 - 12865 1977 ## COG0383 Alpha-mannosidase 14 2 Op 3 . - CDS 12883 - 14799 1760 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 14843 - 14902 4.5 + Prom 14858 - 14917 6.8 15 3 Tu 1 . + CDS 14968 - 15690 640 ## COG2188 Transcriptional regulators + Term 15752 - 15801 1.2 - Term 15689 - 15718 2.1 16 4 Op 1 39/0.000 - CDS 15794 - 16663 1000 ## COG0074 Succinyl-CoA synthetase, alpha subunit 17 4 Op 2 6/0.000 - CDS 16663 - 17829 1526 ## COG0045 Succinyl-CoA synthetase, beta subunit 18 4 Op 3 21/0.000 - CDS 18104 - 19321 1731 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 19 4 Op 4 5/0.000 - CDS 19336 - 22137 2823 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes - Prom 22306 - 22365 4.5 20 4 Op 5 36/0.000 - CDS 22438 - 23154 652 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 21 4 Op 6 22/0.000 - CDS 23170 - 24936 2105 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 22 4 Op 7 24/0.000 - CDS 24936 - 25283 506 ## COG2142 Succinate dehydrogenase, hydrophobic anchor subunit 23 4 Op 8 . - CDS 25277 - 25681 235 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 25888 - 25947 5.5 24 5 Tu 1 . - CDS 26202 - 26387 60 ## ECP_0732 hypothetical protein - Prom 26606 - 26665 2.9 + Prom 26283 - 26342 3.9 25 6 Tu 1 3/0.600 + CDS 26375 - 27658 1497 ## COG0372 Citrate synthase + Term 27685 - 27724 7.5 26 7 Op 1 6/0.000 + CDS 28048 - 28614 453 ## COG3539 P pilus assembly protein, pilin FimA + Term 28625 - 28654 1.1 27 7 Op 2 10/0.000 + CDS 28665 - 31121 1480 ## COG3188 P pilus assembly protein, porin PapC 28 7 Op 3 . + CDS 31136 - 31864 611 ## COG3121 P pilus assembly protein, chaperone PapD 29 7 Op 4 . + CDS 31924 - 32922 774 ## JW5098 predicted fimbrial-like adhesin protein + Term 32931 - 32970 9.4 + Prom 32956 - 33015 5.2 30 8 Tu 1 . + CDS 33074 - 34120 958 ## COG3180 Putative ammonia monooxygenase + Term 34308 - 34353 1.7 31 9 Op 1 3/0.600 - CDS 34117 - 34908 683 ## COG0266 Formamidopyrimidine-DNA glycosylase 32 9 Op 2 8/0.000 - CDS 34944 - 35678 671 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 33 9 Op 3 21/0.000 - CDS 35668 - 36600 950 ## COG1984 Allophanate hydrolase subunit 2 34 9 Op 4 4/0.400 - CDS 36594 - 37250 593 ## COG2049 Allophanate hydrolase subunit 1 35 9 Op 5 . - CDS 37273 - 38016 824 ## COG0327 Uncharacterized conserved protein - Prom 38134 - 38193 3.0 + Prom 38115 - 38174 3.0 36 10 Tu 1 . + CDS 38287 - 39768 1837 ## COG3104 Dipeptide/tripeptide permease - Term 39733 - 39781 -0.9 37 11 Op 1 5/0.000 - CDS 39918 - 41336 941 ## COG0415 Deoxyribodipyrimidine photolyase 38 11 Op 2 . - CDS 41333 - 41842 354 ## COG3272 Uncharacterized conserved protein - Prom 41864 - 41923 4.0 Predicted protein(s) >gi|223713566|gb|ACDM01000032.1| GENE 1 454 - 1245 653 263 aa, chain - ## HITS:1 COG:ybgF KEGG:ns NR:ns ## COG: ybgF COG1729 # Protein_GI_number: 16128717 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 263 1 263 263 395 100.0 1e-110 MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQSTSGDQSGAAA STTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQDDAMVAFQNFIKNYPDSTYLP NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY QQVISKYPGTDGAKQAQKRLNAM >gi|223713566|gb|ACDM01000032.1| GENE 2 1255 - 1776 668 173 aa, chain - ## HITS:1 COG:ECs0776 KEGG:ns NR:ns ## COG: ECs0776 COG2885 # Protein_GI_number: 15830030 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 1 173 1 173 173 296 100.0 2e-80 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARL QMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIS LGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY >gi|223713566|gb|ACDM01000032.1| GENE 3 1811 - 3103 1281 430 aa, chain - ## HITS:1 COG:ECs0775 KEGG:ns NR:ns ## COG: ECs0775 COG0823 # Protein_GI_number: 15830029 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Escherichia coli O157:H7 # 1 430 1 430 430 820 100.0 0 MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAA DLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVD TGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK QDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ VKFPAWSPYL >gi|223713566|gb|ACDM01000032.1| GENE 4 3236 - 4303 1249 355 aa, chain - ## HITS:1 COG:tolA KEGG:ns NR:ns ## COG: tolA COG3064 # Protein_GI_number: 16128714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane protein involved in colicin uptake # Organism: Escherichia coli K12 # 1 355 67 421 421 199 100.0 7e-51 MQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ AELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKA EAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAAD KKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGKN APKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLR IKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP >gi|223713566|gb|ACDM01000032.1| GENE 5 4566 - 4994 483 142 aa, chain - ## HITS:1 COG:ECs0773 KEGG:ns NR:ns ## COG: ECs0773 COG0848 # Protein_GI_number: 15830027 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Escherichia coli O157:H7 # 11 142 11 142 142 207 100.0 4e-54 MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSND NPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKANPKTVFLIGGAKDVPYDEI IKALNLLHSAGVKSVGLMTQPI >gi|223713566|gb|ACDM01000032.1| GENE 6 4998 - 5690 677 230 aa, chain - ## HITS:1 COG:ECs0772 KEGG:ns NR:ns ## COG: ECs0772 COG0811 # Protein_GI_number: 15830026 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Escherichia coli O157:H7 # 1 230 1 230 230 419 100.0 1e-117 MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGI ELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNREL ENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAI GLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTVSESNKG >gi|223713566|gb|ACDM01000032.1| GENE 7 5687 - 5977 208 96 aa, chain - ## HITS:1 COG:ECs0771 KEGG:ns NR:ns ## COG: ECs0771 COG0824 # Protein_GI_number: 15830025 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Escherichia coli O157:H7 # 1 96 39 134 134 177 100.0 3e-45 MLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN AENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ >gi|223713566|gb|ACDM01000032.1| GENE 8 6241 - 6534 252 97 aa, chain - ## HITS:1 COG:ECs0770 KEGG:ns NR:ns ## COG: ECs0770 COG3790 # Protein_GI_number: 15830024 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 97 1 97 97 169 100.0 1e-42 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCA GVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF >gi|223713566|gb|ACDM01000032.1| GENE 9 6534 - 6647 138 37 aa, chain - ## HITS:1 COG:STM0742 KEGG:ns NR:ns ## COG: STM0742 COG4890 # Protein_GI_number: 16764112 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Salmonella typhimurium LT2 # 1 36 1 36 37 57 86.0 5e-09 MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI >gi|223713566|gb|ACDM01000032.1| GENE 10 6662 - 7801 1447 379 aa, chain - ## HITS:1 COG:ECs0769 KEGG:ns NR:ns ## COG: ECs0769 COG1294 # Protein_GI_number: 15830023 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Escherichia coli O157:H7 # 1 379 1 379 379 699 100.0 0 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW KMFGRITKEDIERNTHSLY >gi|223713566|gb|ACDM01000032.1| GENE 11 7817 - 9385 1742 522 aa, chain - ## HITS:1 COG:ECs0768 KEGG:ns NR:ns ## COG: ECs0768 COG1271 # Protein_GI_number: 15830022 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Escherichia coli O157:H7 # 1 522 2 523 523 1011 100.0 0 MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR LGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVA QVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE SGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSV DTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRY TPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKK WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICG LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR >gi|223713566|gb|ACDM01000032.1| GENE 12 9980 - 10207 74 75 aa, chain - ## HITS:1 COG:no KEGG:SSON_0684 NR:ns ## KEGG: SSON_0684 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 75 1 75 75 144 100.0 7e-34 MRGQIVDKGRFVHAGYGMNALFGLQKQANSIYCRDDVDTGKRSASGNFAFIFTLKPRICG FIFNKIITLGELIII >gi|223713566|gb|ACDM01000032.1| GENE 13 10232 - 12865 1977 877 aa, chain - ## HITS:1 COG:ybgG KEGG:ns NR:ns ## COG: ybgG COG0383 # Protein_GI_number: 16128707 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Escherichia coli K12 # 1 877 1 877 877 1824 100.0 0 MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILE DYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMK IGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPL GYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDKLREI YPQRKFVMSRFEEVFEKIEAQRDNLATLKGEFIDGKYMRVHRTIGSTRMDIKIAHARIEN KIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELA EDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRASQFNLRDDRGQ PVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQINQIVPSMGYRTLYIEANQPGNVI AAKSDAEGILENAFWQIALNEDGSLQLVDKDSGVRYDRVLQIEESSDDGDEYDYSPAKEE WVITAANAKPQCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSR RIDVDINLDNQADDHRLRVLVPTPFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAP VPVWNMLNYVALQEGRNGMAVFSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPG RPSGIKMPVPDSQLRGLLSCRLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKL NKAGFNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVIS CSETMMDEHITTEENQGSNLSGPFLPGQSRTFSYRLA >gi|223713566|gb|ACDM01000032.1| GENE 14 12883 - 14799 1760 638 aa, chain - ## HITS:1 COG:hrsA_3 KEGG:ns NR:ns ## COG: hrsA_3 COG1299 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 279 638 1 360 360 640 100.0 0 MNLTTLTHRDALCLNARFTSREEAIHALTQRLAALGKISSTEQFLEEVYRRESLGPTALG EGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMQLLT ALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTY MAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIP ALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPL IVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLAD KPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVL GTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKAAY AFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGIT EGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAA IGWFGAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP >gi|223713566|gb|ACDM01000032.1| GENE 15 14968 - 15690 640 240 aa, chain + ## HITS:1 COG:farR KEGG:ns NR:ns ## COG: farR COG2188 # Protein_GI_number: 16128705 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 240 1 240 240 442 100.0 1e-124 MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILE SIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQITPQ DRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEI IPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR >gi|223713566|gb|ACDM01000032.1| GENE 16 15794 - 16663 1000 289 aa, chain - ## HITS:1 COG:ECs0754 KEGG:ns NR:ns ## COG: ECs0754 COG0074 # Protein_GI_number: 15830008 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 289 1 289 289 508 100.0 1e-144 MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREA VAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK >gi|223713566|gb|ACDM01000032.1| GENE 17 16663 - 17829 1526 388 aa, chain - ## HITS:1 COG:ECs0753 KEGG:ns NR:ns ## COG: ECs0753 COG0045 # Protein_GI_number: 15830007 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Escherichia coli O157:H7 # 1 388 1 388 388 728 100.0 0 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDP REAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTE AFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKK LADSGLNIIAAKGLTDAAQQVVAAVEGK >gi|223713566|gb|ACDM01000032.1| GENE 18 18104 - 19321 1731 405 aa, chain - ## HITS:1 COG:STM0737 KEGG:ns NR:ns ## COG: STM0737 COG0508 # Protein_GI_number: 16764107 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Salmonella typhimurium LT2 # 1 405 1 402 402 717 96.0 0 MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAV LEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRR LLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVP MTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVK AVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIK ELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNG QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV >gi|223713566|gb|ACDM01000032.1| GENE 19 19336 - 22137 2823 933 aa, chain - ## HITS:1 COG:ECs0751 KEGG:ns NR:ns ## COG: ECs0751 COG0567 # Protein_GI_number: 15830005 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Escherichia coli O157:H7 # 1 933 1 933 933 1944 100.0 0 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS QTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKV ADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEE KRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLK EMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMG FSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAV TGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIF HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKH PTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHE WDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLA YATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLS EEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH GYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKS LLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDV AIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLR YAGRPASASPAVGYMSVHQKQQQDLVNDALNVE >gi|223713566|gb|ACDM01000032.1| GENE 20 22438 - 23154 652 238 aa, chain - ## HITS:1 COG:sdhB KEGG:ns NR:ns ## COG: sdhB COG0479 # Protein_GI_number: 16128699 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Escherichia coli K12 # 1 238 1 238 238 494 100.0 1e-140 MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVC GSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPY LLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYR FLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA >gi|223713566|gb|ACDM01000032.1| GENE 21 23170 - 24936 2105 588 aa, chain - ## HITS:1 COG:ECs0748 KEGG:ns NR:ns ## COG: ECs0748 COG1053 # Protein_GI_number: 15830002 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Escherichia coli O157:H7 # 1 588 1 588 588 1153 100.0 0 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNT HEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFG GQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGC TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ FHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREG RGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGI PTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ ESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAM AKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAH SRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY >gi|223713566|gb|ACDM01000032.1| GENE 22 24936 - 25283 506 115 aa, chain - ## HITS:1 COG:ECs0747 KEGG:ns NR:ns ## COG: ECs0747 COG2142 # Protein_GI_number: 15830001 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase, hydrophobic anchor subunit # Organism: Escherichia coli O157:H7 # 1 115 1 115 115 148 99.0 3e-36 MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVF TLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV >gi|223713566|gb|ACDM01000032.1| GENE 23 25277 - 25681 235 134 aa, chain - ## HITS:1 COG:ECs0746 KEGG:ns NR:ns ## COG: ECs0746 COG2009 # Protein_GI_number: 15830000 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Escherichia coli O157:H7 # 6 134 1 129 129 220 100.0 4e-58 MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSP EGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFV ITVVLSLLAGVLVW >gi|223713566|gb|ACDM01000032.1| GENE 24 26202 - 26387 60 61 aa, chain - ## HITS:1 COG:no KEGG:ECP_0732 NR:ns ## KEGG: ECP_0732 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 61 3 63 63 121 96.0 7e-27 MYQPFKVSLAPYCVRLPELKFAFAHQPGFTRFLFGSPLCERGENLGTELWALAGKGSIDD E >gi|223713566|gb|ACDM01000032.1| GENE 25 26375 - 27658 1497 427 aa, chain + ## HITS:1 COG:gltA KEGG:ns NR:ns ## COG: gltA COG0372 # Protein_GI_number: 16128695 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Escherichia coli K12 # 1 427 1 427 427 901 100.0 0 MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFI DGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITR LFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYS IGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVR TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFR LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYP NVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRD FKSDIKR >gi|223713566|gb|ACDM01000032.1| GENE 26 28048 - 28614 453 188 aa, chain + ## HITS:1 COG:ybgD KEGG:ns NR:ns ## COG: ybgD COG3539 # Protein_GI_number: 16128694 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 188 1 188 188 352 100.0 3e-97 MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTT THINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAG EATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTAN ATYVLDYK >gi|223713566|gb|ACDM01000032.1| GENE 27 28665 - 31121 1480 818 aa, chain + ## HITS:1 COG:ybgQ KEGG:ns NR:ns ## COG: ybgQ COG3188 # Protein_GI_number: 16128693 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 818 1 818 818 1579 100.0 0 MDTVNIYRLSFVSCLVMAMPCAMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSV AVNNNKISNGQKINWQKKGDKTIPCINDSLVDKFGLKPDIRQSLPQIDRCIDFSSRPEML FNFDQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTN LNAYGTAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTYLFRPLPQLGSKLTLGETDF SSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPG PFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSH QTENETFFSNEVSWGMLSNTSLYGGLLISDDDYHSAAMGIGQNMLWLGALSFDVTWASSH FDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTT HYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTIHRMSWNDTLDERNSWGMSAGLQS DRPDNGAQVSGNYQHLSSAGEWDISGTYAASDYSSVSSSWSGSFTATQYGAAFHRRSSTN EPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWL SGVAENQLFTVVWGEQSCIIHLPERLEDTTKRLILPCH >gi|223713566|gb|ACDM01000032.1| GENE 28 31136 - 31864 611 242 aa, chain + ## HITS:1 COG:ybgP KEGG:ns NR:ns ## COG: ybgP COG3121 # Protein_GI_number: 16128692 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 242 1 242 242 478 100.0 1e-135 MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENE KGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSS DHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGR NEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVE AK >gi|223713566|gb|ACDM01000032.1| GENE 29 31924 - 32922 774 332 aa, chain + ## HITS:1 COG:no KEGG:JW5098 NR:ns ## KEGG: JW5098 # Name: ybgO # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1 332 22 353 353 679 100.0 0 MALNCYFGTSGGAVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHV YAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQ NKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQ NLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQ CTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVY EKTYTAELSSIPGTPIEAGPFDTVVLFKINYN >gi|223713566|gb|ACDM01000032.1| GENE 30 33074 - 34120 958 348 aa, chain + ## HITS:1 COG:abrB KEGG:ns NR:ns ## COG: abrB COG3180 # Protein_GI_number: 16128690 # Func_class: R General function prediction only # Function: Putative ammonia monooxygenase # Organism: Escherichia coli K12 # 1 348 16 363 363 533 100.0 1e-151 MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRGITLQLPRSAFLAAQAI LGCMIAQNLTGSILTTLAVNWPIVLAILLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPG GAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRMMLGDNAEAVNQHIVWFPPVS INLLLTILLAVVAGTVGCLLRLPSGTMLIPMLAGAVLQSGQLITIELPEWLLAMAYMAIG WRIGLGFDKQILLRALRPLPQILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPGGL DTVAVIAAGSNADMALIMAMQTLRLFSILLTGPAIARFISTYAPKRSA >gi|223713566|gb|ACDM01000032.1| GENE 31 34117 - 34908 683 263 aa, chain - ## HITS:1 COG:nei KEGG:ns NR:ns ## COG: nei COG0266 # Protein_GI_number: 16128689 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Escherichia coli K12 # 1 263 1 263 263 545 99.0 1e-155 MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFS NDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTH PFLQRVGPDVLDPNLTPEVVKERLLSPRFRNCQFAGLLLDQAFLAGLGNYLRVEILWQVG LTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCER CGSIIEKTTLSSRPFYWCPGCQH >gi|223713566|gb|ACDM01000032.1| GENE 32 34944 - 35678 671 244 aa, chain - ## HITS:1 COG:ybgL KEGG:ns NR:ns ## COG: ybgL COG1540 # Protein_GI_number: 16128688 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Escherichia coli K12 # 1 244 1 244 244 442 100.0 1e-124 MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSF PDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLA DAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGAL IENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGI VVAA >gi|223713566|gb|ACDM01000032.1| GENE 33 35668 - 36600 950 310 aa, chain - ## HITS:1 COG:ybgK KEGG:ns NR:ns ## COG: ybgK COG1984 # Protein_GI_number: 16128687 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Escherichia coli K12 # 1 310 1 310 310 634 100.0 0 MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGP EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFE QLAWRLHNEN >gi|223713566|gb|ACDM01000032.1| GENE 34 36594 - 37250 593 218 aa, chain - ## HITS:1 COG:ECs0736 KEGG:ns NR:ns ## COG: ECs0736 COG2049 # Protein_GI_number: 15829990 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Escherichia coli O157:H7 # 1 218 1 218 218 417 100.0 1e-117 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC >gi|223713566|gb|ACDM01000032.1| GENE 35 37273 - 38016 824 247 aa, chain - ## HITS:1 COG:ECs0735 KEGG:ns NR:ns ## COG: ECs0735 COG0327 # Protein_GI_number: 15829989 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 247 1 247 247 499 100.0 1e-141 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAV IVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFID SAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTF IDIPNPA >gi|223713566|gb|ACDM01000032.1| GENE 36 38287 - 39768 1837 493 aa, chain + ## HITS:1 COG:ybgH KEGG:ns NR:ns ## COG: ybgH COG3104 # Protein_GI_number: 16128684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1 493 1 493 493 921 100.0 0 MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYV TPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA GLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYAL IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVN RDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFC ILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML LSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQ ALKFRNRALALES >gi|223713566|gb|ACDM01000032.1| GENE 37 39918 - 41336 941 472 aa, chain - ## HITS:1 COG:phrB KEGG:ns NR:ns ## COG: phrB COG0415 # Protein_GI_number: 16128683 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Escherichia coli K12 # 1 472 1 472 472 972 100.0 0 MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA LRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS IEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSA SLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIA WTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDW REGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWL PELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKGK >gi|223713566|gb|ACDM01000032.1| GENE 38 41333 - 41842 354 169 aa, chain - ## HITS:1 COG:ybgA KEGG:ns NR:ns ## COG: ybgA COG3272 # Protein_GI_number: 16128682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 169 1 169 169 315 100.0 2e-86 MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVFLAHSQPEYRKLGPFVA DIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGYFRPHIDSTERQQLAALID SYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRVINLRHSGVL Prediction of potential genes in microbial genomes Time: Mon May 16 18:57:12 2011 Seq name: gi|223713565|gb|ACDM01000033.1| Escherichia sp. 4_1_40B cont1.33, whole genome shotgun sequence Length of sequence - 1743 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 445 - 1014 74 ## JW0693 hypothetical protein + Prom 823 - 882 3.9 2 2 Tu 1 . + CDS 931 - 1125 109 ## + Term 1179 - 1210 -0.7 3 3 Tu 1 . - CDS 1011 - 1742 102 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713565|gb|ACDM01000033.1| GENE 1 445 - 1014 74 189 aa, chain - ## HITS:1 COG:no KEGG:JW0693 NR:ns ## KEGG: JW0693 # Name: ybfC # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 189 1 189 189 394 100.0 1e-109 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ HELIRSEEK >gi|223713565|gb|ACDM01000033.1| GENE 2 931 - 1125 109 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIFSLYFAISYNTKTNKYHQQKEQNSFHFLIPLDVLCFILAKISPKSSIPAVAGPSGLLM SGNK >gi|223713565|gb|ACDM01000033.1| GENE 3 1011 - 1742 102 243 aa, chain - ## HITS:1 COG:ECs0729 KEGG:ns NR:ns ## COG: ECs0729 COG3209 # Protein_GI_number: 15829983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 1 243 1157 1399 1399 496 98.0 1e-140 LVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGR YITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPD IAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDT KTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRG IRK Prediction of potential genes in microbial genomes Time: Mon May 16 18:57:20 2011 Seq name: gi|223713564|gb|ACDM01000034.1| Escherichia sp. 4_1_40B cont1.34, whole genome shotgun sequence Length of sequence - 1414 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 255 74 ## COG3209 Rhs family protein 2 2 Op 1 . - CDS 373 - 630 120 ## B21_00650 hypothetical protein 3 2 Op 2 . - CDS 699 - 1412 190 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713564|gb|ACDM01000034.1| GENE 1 3 - 255 74 84 aa, chain - ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 84 923 1006 1397 172 100.0 2e-43 MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQ YAEPLVESRYLYDPLGRRVAKRVW >gi|223713564|gb|ACDM01000034.1| GENE 2 373 - 630 120 85 aa, chain - ## HITS:1 COG:no KEGG:B21_00650 NR:ns ## KEGG: B21_00650 # Name: ybfB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 85 24 108 108 124 100.0 7e-28 MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMA IIIWLYFLSGGYIQWFVLSKRIINK >gi|223713564|gb|ACDM01000034.1| GENE 3 699 - 1412 190 237 aa, chain - ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 237 1161 1397 1397 518 100.0 1e-147 EGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQ DPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMGGTGERSGPDIWGNPFYHQYL CVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAGRCDLVETDNSCVENCLKGKF KEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKMKCSGNNIGRFIRFVFTGVM Prediction of potential genes in microbial genomes Time: Mon May 16 18:57:23 2011 Seq name: gi|223713563|gb|ACDM01000035.1| Escherichia sp. 4_1_40B cont1.35, whole genome shotgun sequence Length of sequence - 1384 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1302 712 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713563|gb|ACDM01000035.1| GENE 1 3 - 1302 712 433 aa, chain - ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 433 346 778 1397 852 100.0 0 MVAHRHTGRPEICYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEG GLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASA FYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDAT GSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVK DTQGHETRYEYNAAGDLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIR LTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRL THRTVNGETAERWQYDERGWLTDISHISEGHRVTVHYGYDSKGRLASEHLTVHHPQTNEL LWQHETRHAYNAQ Prediction of potential genes in microbial genomes Time: Mon May 16 18:57:46 2011 Seq name: gi|223713562|gb|ACDM01000036.1| Escherichia sp. 4_1_40B cont1.36, whole genome shotgun sequence Length of sequence - 77386 bp Number of predicted genes - 71, with homology - 71 Number of transcription units - 36, operones - 16 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 332 - 374 8.3 1 1 Tu 1 . - CDS 396 - 602 253 ## ECO103_0695 hypothetical protein - Prom 773 - 832 9.8 + Prom 641 - 700 5.2 2 2 Op 1 . + CDS 801 - 1004 106 ## EcE24377A_0725 K+-transporting ATPase, F subunit (EC:3.6.3.12) 3 2 Op 2 20/0.000 + CDS 1004 - 2677 1901 ## COG2060 K+-transporting ATPase, A chain 4 2 Op 3 18/0.000 + CDS 2700 - 4748 2538 ## COG2216 High-affinity K+ transport system, ATPase chain B 5 2 Op 4 15/0.000 + CDS 4757 - 5329 462 ## COG2156 K+-transporting ATPase, c chain 6 2 Op 5 16/0.000 + CDS 5322 - 8006 2355 ## COG2205 Osmosensitive K+ channel histidine kinase 7 2 Op 6 . + CDS 8078 - 8680 642 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 8719 - 8750 -0.7 - Term 8707 - 8738 -0.7 8 3 Tu 1 . - CDS 8896 - 9153 74 ## ECB_00650 hypothetical protein - Prom 9242 - 9301 4.0 + Prom 9071 - 9130 3.0 9 4 Op 1 10/0.000 + CDS 9276 - 11474 2016 ## COG1982 Arginine/lysine/ornithine decarboxylases 10 4 Op 2 . + CDS 11471 - 12790 1607 ## COG0531 Amino acid transporters + Term 12808 - 12839 2.5 + Prom 12989 - 13048 5.3 11 5 Tu 1 . + CDS 13139 - 13789 319 ## ECB_00647 hypothetical protein + Term 13800 - 13836 0.0 12 6 Tu 1 . - CDS 13830 - 14324 89 ## B21_00637 hypothetical protein - Prom 14418 - 14477 4.3 - Term 14488 - 14519 3.2 13 7 Op 1 6/0.333 - CDS 14538 - 16178 1953 ## COG0033 Phosphoglucomutase 14 7 Op 2 . - CDS 16204 - 16749 416 ## COG3057 Negative regulator of replication initiationR - Prom 16886 - 16945 4.4 + Prom 16842 - 16901 2.4 15 8 Op 1 . + CDS 16934 - 17698 691 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 16 8 Op 2 . + CDS 17769 - 18131 421 ## LF82_2603 uncharacterized protein YbfE + Prom 18155 - 18214 2.9 17 9 Tu 1 . + CDS 18271 - 18801 807 ## COG0716 Flavodoxins + Term 18807 - 18846 9.1 + Prom 18960 - 19019 7.0 18 10 Tu 1 . + CDS 19090 - 19536 492 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 19556 - 19585 2.1 - Term 19588 - 19619 0.1 19 11 Op 1 . - CDS 19620 - 19946 367 ## ECIAI39_0639 putative lipoprotein 20 11 Op 2 . - CDS 19996 - 21402 1503 ## JW0667 predicted outer membrane porin - Term 21750 - 21778 1.3 21 12 Tu 1 . - CDS 21979 - 23643 2032 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 23726 - 23785 7.7 - Term 23757 - 23800 6.6 22 13 Tu 1 . - CDS 23846 - 25792 2276 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 25826 - 25885 5.4 23 14 Op 1 12/0.000 + CDS 26125 - 26925 926 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 26936 - 26973 2.1 24 14 Op 2 7/0.111 + CDS 26985 - 28133 1290 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 25 14 Op 3 5/0.556 + CDS 28142 - 29362 261 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 26 14 Op 4 5/0.556 + CDS 29410 - 30162 812 ## COG0647 Predicted sugar phosphatases of the HAD superfamily + Prom 30409 - 30468 8.9 27 15 Tu 1 . + CDS 30559 - 32223 2042 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Term 32231 - 32275 12.5 + TRNA 32603 - 32679 96.2 # Met CAT 0 0 + TRNA 32689 - 32773 78.3 # Leu TAG 0 0 + TRNA 32797 - 32871 74.3 # Gln TTG 0 0 + TRNA 32906 - 32980 74.3 # Gln TTG 0 0 + TRNA 32996 - 33072 96.2 # Met CAT 0 0 + TRNA 33120 - 33194 75.8 # Gln CTG 0 0 + TRNA 33232 - 33306 75.8 # Gln CTG 0 0 - Term 33304 - 33332 1.0 28 16 Tu 1 . - CDS 33460 - 34635 1115 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - Prom 34686 - 34745 3.1 + Prom 34685 - 34744 2.5 29 17 Op 1 10/0.000 + CDS 34781 - 36205 438 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase + Term 36212 - 36244 4.5 + Prom 36248 - 36307 2.1 30 17 Op 2 17/0.000 + CDS 36358 - 37398 1257 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 31 17 Op 3 11/0.000 + CDS 37395 - 37862 725 ## COG0319 Predicted metal-dependent hydrolase + Term 37893 - 37928 2.4 32 17 Op 4 9/0.000 + CDS 37952 - 38830 995 ## COG4535 Putative Mg2+ and Co2+ transporter CorC 33 17 Op 5 4/0.667 + CDS 38855 - 40393 1966 ## COG0815 Apolipoprotein N-acyltransferase 34 18 Op 1 31/0.000 + CDS 40790 - 41698 1173 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 41821 - 41860 9.1 + Prom 41764 - 41823 2.0 35 18 Op 2 17/0.000 + CDS 41868 - 42608 859 ## COG0765 ABC-type amino acid transport system, permease component 36 18 Op 3 34/0.000 + CDS 42608 - 43282 672 ## COG0765 ABC-type amino acid transport system, permease component 37 18 Op 4 4/0.667 + CDS 43282 - 44007 552 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 19 Op 1 3/0.778 + CDS 44125 - 45060 1021 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 45072 - 45122 8.0 + Prom 45065 - 45124 2.3 39 19 Op 2 . + CDS 45144 - 46814 1241 ## COG0443 Molecular chaperone + Term 46913 - 46968 0.2 - Term 46806 - 46855 9.0 40 20 Op 1 . - CDS 46874 - 48325 911 ## JW0644 Hsc56 co-chaperone of HscC 41 20 Op 2 . - CDS 48322 - 49029 478 ## JW0643 predicted tRNA ligase - Prom 49113 - 49172 10.2 + Prom 49038 - 49097 9.9 42 21 Tu 1 . + CDS 49146 - 49685 393 ## COG0790 FOG: TPR repeat, SEL1 subfamily 43 22 Op 1 . - CDS 49695 - 51122 811 ## JW0641 predicted chaperone 44 22 Op 2 . - CDS 51119 - 51826 275 ## JW0640 hypothetical protein - Prom 51899 - 51958 7.4 + Prom 51841 - 51900 4.9 45 23 Tu 1 . + CDS 51990 - 52967 857 ## COG0790 FOG: TPR repeat, SEL1 subfamily + Term 52980 - 53015 4.3 - Term 52852 - 52884 3.1 46 24 Tu 1 . - CDS 53037 - 53519 488 ## APECO1_1413 hypothetical protein - Prom 53601 - 53660 3.1 + Prom 53501 - 53560 3.9 47 25 Op 1 9/0.000 + CDS 53613 - 56336 3241 ## COG0495 Leucyl-tRNA synthetase 48 25 Op 2 12/0.000 + CDS 56447 - 56932 495 ## COG2980 Rare lipoprotein B 49 25 Op 3 7/0.111 + CDS 56932 - 57963 863 ## COG1466 DNA polymerase III, delta subunit 50 25 Op 4 3/0.778 + CDS 57965 - 58606 461 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 51 25 Op 5 6/0.333 + CDS 58630 - 59241 409 ## COG0406 Fructose-2,6-bisphosphatase + Prom 59406 - 59465 4.7 52 26 Op 1 14/0.000 + CDS 59501 - 59818 310 ## COG0799 Uncharacterized homolog of plant Iojap protein 53 26 Op 2 9/0.000 + CDS 59822 - 60289 491 ## COG1576 Uncharacterized conserved protein 54 26 Op 3 19/0.000 + CDS 60320 - 62221 1978 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 55 26 Op 4 8/0.000 + CDS 62224 - 63336 1105 ## COG0772 Bacterial cell division membrane protein 56 26 Op 5 12/0.000 + CDS 63347 - 64435 915 ## COG0797 Lipoproteins 57 26 Op 6 9/0.000 + CDS 64502 - 65785 1439 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 65843 - 65874 4.8 + Prom 65789 - 65848 2.3 58 26 Op 7 6/0.333 + CDS 65895 - 66158 331 ## COG2921 Uncharacterized conserved protein + Prom 66167 - 66226 3.9 59 27 Tu 1 . + CDS 66259 - 66900 528 ## COG0321 Lipoate-protein ligase B + Term 66914 - 66947 -0.3 + Prom 66933 - 66992 5.5 60 28 Tu 1 . + CDS 67159 - 68112 682 ## COG0583 Transcriptional regulator + Prom 68176 - 68235 4.7 61 29 Tu 1 . + CDS 68321 - 69286 927 ## COG0320 Lipoate synthase + Term 69323 - 69352 2.1 - Term 69311 - 69340 2.1 62 30 Tu 1 . - CDS 69387 - 69596 178 ## PROTEIN SUPPORTED gi|90022866|ref|YP_528693.1| ribosomal protein L25 - Prom 69637 - 69696 3.7 63 31 Op 1 . - CDS 69719 - 70282 611 ## COG0388 Predicted amidohydrolase 64 31 Op 2 . - CDS 70279 - 70506 290 ## COG0388 Predicted amidohydrolase - Prom 70584 - 70643 2.7 + Prom 70481 - 70540 5.2 65 32 Tu 1 . + CDS 70599 - 70982 223 ## COG0239 Integral membrane protein possibly involved in chromosome condensation + Term 70996 - 71024 0.6 - Term 70982 - 71012 1.0 66 33 Op 1 . - CDS 71036 - 71245 317 ## COG1278 Cold shock proteins - Prom 71359 - 71418 6.5 - Term 71259 - 71287 -0.0 67 33 Op 2 . - CDS 71420 - 71980 491 ## B21_00581 hypothetical protein - Prom 72213 - 72272 8.9 + Prom 72486 - 72545 6.9 68 34 Tu 1 . + CDS 72569 - 73954 1463 ## COG3069 C4-dicarboxylate transporter + Term 73963 - 73997 5.2 - Term 73945 - 73989 5.1 69 35 Op 1 9/0.000 - CDS 73995 - 74675 263 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 70 35 Op 2 . - CDS 74644 - 76302 1501 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 76354 - 76413 5.3 + Prom 76418 - 76477 9.5 71 36 Tu 1 . + CDS 76681 - 77386 543 ## COG3053 Citrate lyase synthetase Predicted protein(s) >gi|223713562|gb|ACDM01000036.1| GENE 1 396 - 602 253 68 aa, chain - ## HITS:1 COG:no KEGG:ECO103_0695 NR:ns ## KEGG: ECO103_0695 # Name: ybfA # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 68 1 68 68 117 100.0 1e-25 MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQA EKATGDFY >gi|223713562|gb|ACDM01000036.1| GENE 2 801 - 1004 106 67 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_0725 NR:ns ## KEGG: EcE24377A_0725 # Name: kdpF # Def: K+-transporting ATPase, F subunit (EC:3.6.3.12) # Organism: E.coli_E24377A # Pathway: Two-component system [PATH:ecw02020] # 1 67 1 67 67 93 100.0 2e-18 MAFAIFILFLHPARRFLRNLCSQNSTLPVSLLGHWRCTVSAGVITGVLLVFLLLGYLVYA LINAEAF >gi|223713562|gb|ACDM01000036.1| GENE 3 1004 - 2677 1901 557 aa, chain + ## HITS:1 COG:kdpA KEGG:ns NR:ns ## COG: kdpA COG2060 # Protein_GI_number: 16128674 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, A chain # Organism: Escherichia coli K12 # 1 557 1 557 557 982 99.0 0 MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVERVLFRALGVSDREMNWK QYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSG ETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVP VALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANS SHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGDRRQGRMLLWAMSVIFVICVGVVMW AEVQGNPHLLALGTDSSINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGM VPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKLTALA ILVTPTLVLMGAALAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPF WNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTLPTHGPLFVGLLIGTVLLVGA LTFIPALALGPVAEYLS >gi|223713562|gb|ACDM01000036.1| GENE 4 2700 - 4748 2538 682 aa, chain + ## HITS:1 COG:ECs0725 KEGG:ns NR:ns ## COG: ECs0725 COG2216 # Protein_GI_number: 15829979 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity K+ transport system, ATPase chain B # Organism: Escherichia coli O157:H7 # 1 682 1 682 682 1246 99.0 0 MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTCISIAMASGAMPG NALFSAAISGWLWITVLFANFAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADK VPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGT RILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLLATATLW PFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGD VDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLADAAQLASLADETPEGRSIVILAKQRF NLRERDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKV DQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAA IAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQ AAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYP QLNALNIMCLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLG GLLVPFIGIKVIDLLLTVCGLV >gi|223713562|gb|ACDM01000036.1| GENE 5 4757 - 5329 462 190 aa, chain + ## HITS:1 COG:kdpC KEGG:ns NR:ns ## COG: kdpC COG2156 # Protein_GI_number: 16128672 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, c chain # Organism: Escherichia coli K12 # 1 190 1 190 190 337 100.0 6e-93 MSGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGSLIREGDTVRGSALIGQNFT GNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVEL VTASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYIGQPVVNIVE LNLALDKLDE >gi|223713562|gb|ACDM01000036.1| GENE 6 5322 - 8006 2355 894 aa, chain + ## HITS:1 COG:kdpD KEGG:ns NR:ns ## COG: kdpD COG2205 # Protein_GI_number: 16128671 # Func_class: T Signal transduction mechanisms # Function: Osmosensitive K+ channel histidine kinase # Organism: Escherichia coli K12 # 1 894 1 894 894 1768 100.0 0 MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVV ETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALILMDELAHSNAPGSR HPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLV DLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIALRELALRRTADRVDEQMRAWRGH PGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASRLGSVWHAVYVETPALHRLPEKKRR AILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIILGRPASRRWWRRETFADRL ARIAPDLDQVLVALDEPPARTINNAPDNRSFKDKWRVQIQGCVVAAALCAVITLIAMQWL MAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFFIAPRGTLAVSDVQYLLT FAVMLTVGLVIGNLTAGVRYQARVARYREQRTRHLYEMSKALAVGRSPQDIAATSEQFIA STFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQIL PLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTASEEQARMASER EQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNN LLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFER VLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKES AVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM >gi|223713562|gb|ACDM01000036.1| GENE 7 8078 - 8680 642 200 aa, chain + ## HITS:1 COG:kdpE KEGG:ns NR:ns ## COG: kdpE COG0745 # Protein_GI_number: 16128670 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 200 26 225 225 389 100.0 1e-108 MRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEES DKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHR GEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ DPARPRHFITETGIGYRFML >gi|223713562|gb|ACDM01000036.1| GENE 8 8896 - 9153 74 85 aa, chain - ## HITS:1 COG:no KEGG:ECB_00650 NR:ns ## KEGG: ECB_00650 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 85 1 85 85 169 100.0 3e-41 MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVGRLTGIEEVKVEAIAMS KLHNMSCPPYMGHSAAVIFHLIYLS >gi|223713562|gb|ACDM01000036.1| GENE 9 9276 - 11474 2016 732 aa, chain + ## HITS:1 COG:speF KEGG:ns NR:ns ## COG: speF COG1982 # Protein_GI_number: 16128669 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1 732 1 732 732 1551 99.0 0 MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPV FIATENQERVPAEYLPRISGVFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVN QGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQ QHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNA RQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGF SQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYPLFAALDINAKMHEGVSGRNM WMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHS FEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSIL FLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMH DLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALPY PPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPR DAQSTLLKGEKL >gi|223713562|gb|ACDM01000036.1| GENE 10 11471 - 12790 1607 439 aa, chain + ## HITS:1 COG:potE KEGG:ns NR:ns ## COG: potE COG0531 # Protein_GI_number: 16128668 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 439 1 439 439 770 100.0 0 MSQAKSNKMGVVQLTILTMVNMMGSGIIMLPTKLAEVGTISIISWLVTAVGSMALAWAFA KCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELLGASLS PVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIPVVGLCIIGWFWFSPTLYVDS WNPHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVENPERNVPIAVLGGTLGAAVIYIV STNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKVIMALMVMSCCGSLLGWQFTIAQVF KSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQSGLALMTISPSLNSQFNVLVNLAVVTN IIPYILSMAALVIIQKVANVPPSKAKVANFVAFVGAMYSFYALYSSGEEAMLYGSIVTFL GWTLYGLVSPRFELKNKHG >gi|223713562|gb|ACDM01000036.1| GENE 11 13139 - 13789 319 216 aa, chain + ## HITS:1 COG:no KEGG:ECB_00647 NR:ns ## KEGG: ECB_00647 # Name: ybfGH # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 216 1 216 216 426 100.0 1e-118 MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAETALYQLQVTTKSPMGALVYG SGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPIADDVAGGIFALNGGDLGE DTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFT FYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ >gi|223713562|gb|ACDM01000036.1| GENE 12 13830 - 14324 89 164 aa, chain - ## HITS:1 COG:no KEGG:B21_00637 NR:ns ## KEGG: B21_00637 # Name: ybfP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 164 1 164 164 340 100.0 9e-93 MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTRGLTGSIAVNIAPFRCK TNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPGWQCYTSFFMRVCQGKPGT RPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKAINTH >gi|223713562|gb|ACDM01000036.1| GENE 13 14538 - 16178 1953 546 aa, chain - ## HITS:1 COG:pgm KEGG:ns NR:ns ## COG: pgm COG0033 # Protein_GI_number: 16128664 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Escherichia coli K12 # 1 546 1 546 546 1081 100.0 0 MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAARHSFNEPH ILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPT PAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANAL LADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSG IEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLA FANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPQWGKDVAVGKTLVSSAMIDRVVN DLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAE ITAVTGKNPQEHYNELAKRFGAPSYNRLQAAATSAQKAALSKLSPEMVSASTLAGDPITA RLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVS EVLKNA >gi|223713562|gb|ACDM01000036.1| GENE 14 16204 - 16749 416 181 aa, chain - ## HITS:1 COG:seqA KEGG:ns NR:ns ## COG: seqA COG3057 # Protein_GI_number: 16128663 # Func_class: L Replication, recombination and repair # Function: Negative regulator of replication initiationR # Organism: Escherichia coli K12 # 1 181 1 181 181 344 100.0 5e-95 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT I >gi|223713562|gb|ACDM01000036.1| GENE 15 16934 - 17698 691 254 aa, chain + ## HITS:1 COG:ybfF KEGG:ns NR:ns ## COG: ybfF COG0596 # Protein_GI_number: 16128662 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 254 1 254 254 500 100.0 1e-141 MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDMRNHGLSPRDP VMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALASDRIDKLVAIDIAPVDYH VRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWD QYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEK PDAVLRAIRRYLND >gi|223713562|gb|ACDM01000036.1| GENE 16 17769 - 18131 421 120 aa, chain + ## HITS:1 COG:no KEGG:LF82_2603 NR:ns ## KEGG: LF82_2603 # Name: ybfE # Def: uncharacterized protein YbfE # Organism: E.coli_LF82 # Pathway: not_defined # 1 120 1 120 120 190 99.0 1e-47 MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRIN KRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV >gi|223713562|gb|ACDM01000036.1| GENE 17 18271 - 18801 807 176 aa, chain + ## HITS:1 COG:ECs0715 KEGG:ns NR:ns ## COG: ECs0715 COG0716 # Protein_GI_number: 15829969 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 348 100.0 3e-96 MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYG EAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEILNA >gi|223713562|gb|ACDM01000036.1| GENE 18 19090 - 19536 492 148 aa, chain + ## HITS:1 COG:ECs0714 KEGG:ns NR:ns ## COG: ECs0714 COG0735 # Protein_GI_number: 15829968 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Escherichia coli O157:H7 # 1 148 1 148 148 279 100.0 1e-75 MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN QFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSDDSIEARQREIAAKHGI RLTNHSLYLYGHCAEGDCREDEHAHEGK >gi|223713562|gb|ACDM01000036.1| GENE 19 19620 - 19946 367 108 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_0639 NR:ns ## KEGG: ECIAI39_0639 # Name: ybfN # Def: putative lipoprotein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 108 1 108 108 172 99.0 3e-42 MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE KQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK >gi|223713562|gb|ACDM01000036.1| GENE 20 19996 - 21402 1503 468 aa, chain - ## HITS:1 COG:no KEGG:JW0667 NR:ns ## KEGG: JW0667 # Name: ybfM # Def: predicted outer membrane porin # Organism: E.coli_J # Pathway: not_defined # 1 468 1 468 468 874 99.0 0 MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDG DKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAY DEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF DYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAF GQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGY WAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG AMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDG RAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF >gi|223713562|gb|ACDM01000036.1| GENE 21 21979 - 23643 2032 554 aa, chain - ## HITS:1 COG:glnS KEGG:ns NR:ns ## COG: glnS COG0008 # Protein_GI_number: 16128656 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 554 1 554 554 1169 100.0 0 MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKG QCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLA YVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMA SPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGE GEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKA ERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVP NPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFN RTVGLRDTWAKVGE >gi|223713562|gb|ACDM01000036.1| GENE 22 23846 - 25792 2276 648 aa, chain - ## HITS:1 COG:ECs0709_1 KEGG:ns NR:ns ## COG: ECs0709_1 COG1263 # Protein_GI_number: 15829963 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 1 389 1 389 390 687 99.0 0 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGV ASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKL PDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFI NRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTG ISLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLVMGVIFFAIYFVVFSLVIR MFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAVGGTDNLKAIDACITRLRLTV ADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATP ATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVS PAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILE MDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIKK >gi|223713562|gb|ACDM01000036.1| GENE 23 26125 - 26925 926 266 aa, chain + ## HITS:1 COG:ECs0708 KEGG:ns NR:ns ## COG: ECs0708 COG0363 # Protein_GI_number: 15829962 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli O157:H7 # 1 266 1 266 266 557 99.0 1e-159 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD EPSTMELKVKTLRYFNELEAENIKDL >gi|223713562|gb|ACDM01000036.1| GENE 24 26985 - 28133 1290 382 aa, chain + ## HITS:1 COG:ECs0707 KEGG:ns NR:ns ## COG: ECs0707 COG1820 # Protein_GI_number: 15829961 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Escherichia coli O157:H7 # 1 382 1 382 382 769 100.0 0 MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQL NGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAK HPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITKVTLAPEMVPAEV ISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEAD IYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV DENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANL TAFTPDFKITKTIVNGNEVVTQ >gi|223713562|gb|ACDM01000036.1| GENE 25 28142 - 29362 261 406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 129 390 47 317 319 105 27 1e-21 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN >gi|223713562|gb|ACDM01000036.1| GENE 26 29410 - 30162 812 250 aa, chain + ## HITS:1 COG:ECs0705 KEGG:ns NR:ns ## COG: ECs0705 COG0647 # Protein_GI_number: 15829959 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Escherichia coli O157:H7 # 1 250 1 250 250 517 100.0 1e-147 MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAG VDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETR SYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPW IIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWI YPSVAEIDVI >gi|223713562|gb|ACDM01000036.1| GENE 27 30559 - 32223 2042 554 aa, chain + ## HITS:1 COG:asnB KEGG:ns NR:ns ## COG: asnB COG0367 # Protein_GI_number: 16128650 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Escherichia coli K12 # 1 554 1 554 554 1145 100.0 0 MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGA QPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQG MFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSY LWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDS SIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHF TVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY FHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQD KMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLET ARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDD PSGRAVGVHQSAYK >gi|223713562|gb|ACDM01000036.1| GENE 28 33460 - 34635 1115 391 aa, chain - ## HITS:1 COG:ubiF KEGG:ns NR:ns ## COG: ubiF COG0654 # Protein_GI_number: 16128645 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 391 1 391 391 780 100.0 0 MTNQPTEIAIVGGGMVGGALALGLAQHGFAVTVIEHAEPAPFVADSQPDVRISAISAASV SLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKLPLLGYMVENTVLQQALWQ ALEAHPKVTLRVPGSLIALHRHDDLQELELKGGEVIRAKLVIGADGANSQVRQMAGIGVH AWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPLFDNWASLVWYDSPARIRQLQNM NMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQG VNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSNNL PPLRFMRNLGLMAAERAGVLKRQALKYALGL >gi|223713562|gb|ACDM01000036.1| GENE 29 34781 - 36205 438 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1 390 1 389 449 173 29 3e-42 MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF HQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRG DRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDD ILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSH PIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDI QISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQ RLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIG KFVDVEITDVYPNSLRGKVVRTEDEMGLRVAETPESVIARTRKENDLGVGYYQP >gi|223713562|gb|ACDM01000036.1| GENE 30 36358 - 37398 1257 346 aa, chain + ## HITS:1 COG:ECs0698 KEGG:ns NR:ns ## COG: ECs0698 COG1702 # Protein_GI_number: 15829952 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Escherichia coli O157:H7 # 1 346 14 359 359 644 99.0 0 MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRDNHFKLTGRPICVTAAA DILRSLYVDTAPMRGQIQDIEPEQIHLAIKEARVLEQSAESVPEYGKAVNIKTKRGVIKP RTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFII LDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFN FFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAALAAERKREEQEQK >gi|223713562|gb|ACDM01000036.1| GENE 31 37395 - 37862 725 155 aa, chain + ## HITS:1 COG:ybeY KEGG:ns NR:ns ## COG: ybeY COG0319 # Protein_GI_number: 16128642 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 155 1 155 155 271 100.0 2e-73 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIRVVDTAESHSLNLTYRG KDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL GYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE >gi|223713562|gb|ACDM01000036.1| GENE 32 37952 - 38830 995 292 aa, chain + ## HITS:1 COG:ECs0696 KEGG:ns NR:ns ## COG: ECs0696 COG4535 # Protein_GI_number: 15829950 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorC # Organism: Escherichia coli O157:H7 # 1 292 1 292 292 508 100.0 1e-144 MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDSGQNDLIDEDTRDMLEG VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK DLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVT IEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIG GLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVKIPDDSPQPKLDE >gi|223713562|gb|ACDM01000036.1| GENE 33 38855 - 40393 1966 512 aa, chain + ## HITS:1 COG:lnt KEGG:ns NR:ns ## COG: lnt COG0815 # Protein_GI_number: 16128640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Escherichia coli K12 # 1 512 1 512 512 996 100.0 0 MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK >gi|223713562|gb|ACDM01000036.1| GENE 34 40790 - 41698 1173 302 aa, chain + ## HITS:1 COG:STM0665 KEGG:ns NR:ns ## COG: STM0665 COG0834 # Protein_GI_number: 16764042 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 1 302 7 308 308 547 93.0 1e-156 MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVER QKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMR IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK DDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA LN >gi|223713562|gb|ACDM01000036.1| GENE 35 41868 - 42608 859 246 aa, chain + ## HITS:1 COG:gltJ KEGG:ns NR:ns ## COG: gltJ COG0765 # Protein_GI_number: 16128637 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 246 1 246 246 465 100.0 1e-131 MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRF LSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGL FTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLV KNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAFIMLVMTLVERKVRLP GNMGGK >gi|223713562|gb|ACDM01000036.1| GENE 36 42608 - 43282 672 224 aa, chain + ## HITS:1 COG:ECs0692 KEGG:ns NR:ns ## COG: ECs0692 COG0765 # Protein_GI_number: 15829946 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1 224 1 224 224 370 100.0 1e-102 MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYV NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMVAFSMFEAAYYSEIIRAGI QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRRTA >gi|223713562|gb|ACDM01000036.1| GENE 37 43282 - 44007 552 241 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 217 45 2e-55 MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV DGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKL LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV ELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSDRAKDFLAKIL H >gi|223713562|gb|ACDM01000036.1| GENE 38 44125 - 45060 1021 311 aa, chain + ## HITS:1 COG:ybeK KEGG:ns NR:ns ## COG: ybeK COG1957 # Protein_GI_number: 16128634 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1 311 1 311 311 625 100.0 1e-179 MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTD IPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVT IVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQS GIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLH DPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFV DLLADRLKFYA >gi|223713562|gb|ACDM01000036.1| GENE 39 45144 - 46814 1241 556 aa, chain + ## HITS:1 COG:ybeW KEGG:ns NR:ns ## COG: ybeW COG0443 # Protein_GI_number: 16128633 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli K12 # 1 556 1 556 556 1100 99.0 0 MDNAELAIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSR RTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSLKEDAEEFLQRPIKDVVIS VPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQQNTRSLVFDLGGGTFDV TVLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRADVARTMLNESELAALYACVEAA KCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLLNRLRVPIEQALRDARLKPSQIDSL VLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIVALGAAIQAACRLRSEDIEEVILTDIC PYSLGVEVNRQGVSGIFSPIIERNTTVPVSRVETYSTMHPEQDSITVNVYQGENHKVKNN ILVESFDVPLKKTGAYQSIDIRFSYDINGLLEVDVLLEDGSVKSRVINHSPVTLSAQQIE ESRTRLSALKIYPRDMLINRTFKAKLEELWARALGDEREEIGRVITDFDAALQSNDMARV DEVRRRASDYLAIEIP >gi|223713562|gb|ACDM01000036.1| GENE 40 46874 - 48325 911 483 aa, chain - ## HITS:1 COG:no KEGG:JW0644 NR:ns ## KEGG: JW0644 # Name: djlC # Def: Hsc56 co-chaperone of HscC # Organism: E.coli_J # Pathway: not_defined # 1 483 1 483 483 947 100.0 0 MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQAYEEALRLAVNPVEEA DDEEKDAAAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNTWNMEDVDQLRWPLCAIAI EARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAIQAGDCFDFLSLLEYPIALQN QTVEYYFALERCCRYHPDYVTAFLAMEGPWLIPDDAKLHRKLLRWYSSVQTGMAELIPVA QQWQTEEPESEDARYYLCAQRLYCGEGESLLADLCAYWESYPSTQADNLLLQWSKRHCPD YFALLVMVIEARSMVDAQGQPLKYVPGESARTRLLWAEILHSGKLSPLGQSFIESLFFKR KAWAWWKSRVGSETEQDSPFLDLYRVAEQVVLEAFPKQEMLARLNTRLEGGDAHPLEAIV TRMLLTKVKLEPEDEDVDEPTPENHEEKNDEGEKPQSITSIIKISLTVLVIGYALGKIAM LFS >gi|223713562|gb|ACDM01000036.1| GENE 41 48322 - 49029 478 235 aa, chain - ## HITS:1 COG:no KEGG:JW0643 NR:ns ## KEGG: JW0643 # Name: ybeU # Def: predicted tRNA ligase # Organism: E.coli_J # Pathway: not_defined # 1 235 1 235 235 473 100.0 1e-132 MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFELSSSWGINNRDDLIQTIYQM TDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYV RMGFLSRVGVLNKWLTEEESLWLQSRVYVRAHHYYHSWMHYFSAYSLGRLYWQSSQCEDN TSLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQSECPVTLKDVSDL >gi|223713562|gb|ACDM01000036.1| GENE 42 49146 - 49685 393 179 aa, chain + ## HITS:1 COG:ECs0685 KEGG:ns NR:ns ## COG: ECs0685 COG0790 # Protein_GI_number: 15829939 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli O157:H7 # 1 179 6 184 184 343 99.0 1e-94 MYIFAIFIVAAITCISQPKKTTLRDKAMVNYAFDYLSSPGSLPFTTAATELSAIHGHSTS QYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAIL WYKEAAEQGYAHAQYTLGLIYRNGSGINVNHYESQKWLKLAAKQHYKNAERLLAGLPAH >gi|223713562|gb|ACDM01000036.1| GENE 43 49695 - 51122 811 475 aa, chain - ## HITS:1 COG:no KEGG:JW0641 NR:ns ## KEGG: JW0641 # Name: djlB # Def: predicted chaperone # Organism: E.coli_J # Pathway: not_defined # 1 475 1 475 475 907 100.0 0 MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQAYEEALRIAQSPAKSV WQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNYCSMEEIDELRWSLCTIAM NTAHLSFECVVLLAERLRWLQEENTGEIDEEELESFLYAIAKGNVFNFQTILHLPVAVQN DTIDFYQMFARIWSSHPQWLTLYLAQHRAVIIPDDAKLHRNLLRWYSAGRLDIPELLDYA QSWRETEPDNEDAPYYEYAQRVYCGEGESLLAELCDYWREYPSTQADALMLQWCRQHRVD YYPLLVMMIEARDLVNDQGKPLLYVPGDSARTRFHLYEILSDEKLSALGRSLVEMVLHKG RKPRISLTRDTEHTLWPLYLVAKQLVQACQPTEESLMPIVSRLDAENRCPLEALIIRRLL IQAANFTEKQTVEPEPQPQPMPVDDGGPGCLGIIKIIFYIFIFAGLIGKILHLFG >gi|223713562|gb|ACDM01000036.1| GENE 44 51119 - 51826 275 235 aa, chain - ## HITS:1 COG:no KEGG:JW0640 NR:ns ## KEGG: JW0640 # Name: ybeR # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 235 1 235 235 471 100.0 1e-132 MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRM IDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYV RMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHL PLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL >gi|223713562|gb|ACDM01000036.1| GENE 45 51990 - 52967 857 325 aa, chain + ## HITS:1 COG:ybeQ KEGG:ns NR:ns ## COG: ybeQ COG0790 # Protein_GI_number: 16128627 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli K12 # 1 325 3 327 327 597 100.0 1e-170 MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQG HCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEAPNYKEAV VWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYED GKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSV GAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQAL DLYRKVQSSGTRDVSQEIRETEDLL >gi|223713562|gb|ACDM01000036.1| GENE 46 53037 - 53519 488 160 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1413 NR:ns ## KEGG: APECO1_1413 # Name: ybeL # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 160 1 160 160 305 100.0 2e-82 MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELTRTEVDELTRAVRRDLE EFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVV GLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP >gi|223713562|gb|ACDM01000036.1| GENE 47 53613 - 56336 3241 907 aa, chain + ## HITS:1 COG:leuS KEGG:ns NR:ns ## COG: leuS COG0495 # Protein_GI_number: 16128625 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Escherichia coli K12 # 48 907 1 860 860 1795 100.0 0 MNNPGIISTSSARKAVLTRTFGLCYADLKNHLNATFVAVLKTGPLAAMQEQYRPEEIESK VQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNV LQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYY RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFI KITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTF MGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPL TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQ ALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIP MVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTF MESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELV YTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRV WKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM NKLAKAPTDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEK AMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGK LLNLVVG >gi|223713562|gb|ACDM01000036.1| GENE 48 56447 - 56932 495 161 aa, chain + ## HITS:1 COG:rlpB KEGG:ns NR:ns ## COG: rlpB COG2980 # Protein_GI_number: 16128624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rare lipoprotein B # Organism: Escherichia coli K12 # 1 161 33 193 193 273 100.0 8e-74 MKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRN GQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAA EQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN >gi|223713562|gb|ACDM01000036.1| GENE 49 56932 - 57963 863 343 aa, chain + ## HITS:1 COG:holA KEGG:ns NR:ns ## COG: holA COG1466 # Protein_GI_number: 16128623 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Escherichia coli K12 # 1 343 1 343 343 605 100.0 1e-173 MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTD WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKA QENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLA LAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEG SEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQ AVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLADVFIDG >gi|223713562|gb|ACDM01000036.1| GENE 50 57965 - 58606 461 213 aa, chain + ## HITS:1 COG:nadD KEGG:ns NR:ns ## COG: nadD COG1057 # Protein_GI_number: 16128622 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Escherichia coli K12 # 1 213 1 213 213 415 100.0 1e-116 MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHML ELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEY ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNIS ATIIRERLQNGESCEDLLPEPVLTYINQQGLYR >gi|223713562|gb|ACDM01000036.1| GENE 51 58630 - 59241 409 203 aa, chain + ## HITS:1 COG:phpB KEGG:ns NR:ns ## COG: phpB COG0406 # Protein_GI_number: 16128621 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Escherichia coli K12 # 1 203 1 203 203 409 100.0 1e-114 MRLWLIRHGETQANIDGLYSGHAPTPLTARGIEQAQNLHTLLHGVSFDLVLCSELERAQH TARLVLSDRQLPVQIIPELNEMFFGDWEMRHHRDLMQEDAENYSAWCNDWQHAIPTNGEG FQAFSQRVERFIARLSEFQHYQNILVVSHQGVLSLLIARLIGMPAEAMWHFRVDQGCWSA IDINQKFATLRVLNSRAIGVENA >gi|223713562|gb|ACDM01000036.1| GENE 52 59501 - 59818 310 105 aa, chain + ## HITS:1 COG:STM0642 KEGG:ns NR:ns ## COG: STM0642 COG0799 # Protein_GI_number: 16764019 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Salmonella typhimurium LT2 # 1 105 1 105 105 187 97.0 3e-48 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS >gi|223713562|gb|ACDM01000036.1| GENE 53 59822 - 60289 491 155 aa, chain + ## HITS:1 COG:ECs0674 KEGG:ns NR:ns ## COG: ECs0674 COG1576 # Protein_GI_number: 15829928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 155 1 155 155 304 100.0 4e-83 MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQM LAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE >gi|223713562|gb|ACDM01000036.1| GENE 54 60320 - 62221 1978 633 aa, chain + ## HITS:1 COG:ECs0673 KEGG:ns NR:ns ## COG: ECs0673 COG0768 # Protein_GI_number: 15829927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Escherichia coli O157:H7 # 1 633 1 633 633 1294 99.0 0 MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIK LVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFR KERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVS KINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLK EVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDG ISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQL PGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGID LAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKV PHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYK IAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMIMENGGAGPAV GTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH >gi|223713562|gb|ACDM01000036.1| GENE 55 62224 - 63336 1105 370 aa, chain + ## HITS:1 COG:ECs0672 KEGG:ns NR:ns ## COG: ECs0672 COG0772 # Protein_GI_number: 15829926 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Escherichia coli O157:H7 # 1 370 1 370 370 618 100.0 1e-177 MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIM VVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAV PLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS WRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGL RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQT TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIH THRKMLSKSV >gi|223713562|gb|ACDM01000036.1| GENE 56 63347 - 64435 915 362 aa, chain + ## HITS:1 COG:rlpA KEGG:ns NR:ns ## COG: rlpA COG0797 # Protein_GI_number: 16128616 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipoproteins # Organism: Escherichia coli K12 # 1 362 1 362 362 572 100.0 1e-163 MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD YQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYAR ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSD QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITT AQ >gi|223713562|gb|ACDM01000036.1| GENE 57 64502 - 65785 1439 427 aa, chain + ## HITS:1 COG:ZdacA KEGG:ns NR:ns ## COG: ZdacA COG1686 # Protein_GI_number: 15800346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli O157:H7 EDL933 # 25 427 1 403 403 825 100.0 0 MPAGSAFAIVGHFFNSITDVVVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKT MIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETD LVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQD AFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKE FTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKD LKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKL MFHHWFG >gi|223713562|gb|ACDM01000036.1| GENE 58 65895 - 66158 331 87 aa, chain + ## HITS:1 COG:ECs0669 KEGG:ns NR:ns ## COG: ECs0669 COG2921 # Protein_GI_number: 15829923 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 87 1 87 87 157 100.0 5e-39 MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSI TINATHIEQVETLYEELGKIDIVRMVL >gi|223713562|gb|ACDM01000036.1| GENE 59 66259 - 66900 528 213 aa, chain + ## HITS:1 COG:ECs0668 KEGG:ns NR:ns ## COG: ECs0668 COG0321 # Protein_GI_number: 15829922 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Escherichia coli O157:H7 # 23 213 1 191 191 401 100.0 1e-112 MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHYPVFTQGQAGKAEHILM PGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELVTLLEQTVVNTLAELGIEA HPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGMEMAKIS QWKPEATTNNIAPRLLENILALLNNPDFEYITA >gi|223713562|gb|ACDM01000036.1| GENE 60 67159 - 68112 682 317 aa, chain + ## HITS:1 COG:ybeF KEGG:ns NR:ns ## COG: ybeF COG0583 # Protein_GI_number: 16128612 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 52 317 1 266 266 525 99.0 1e-149 MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAI SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTIT IATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQ HHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQI NFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFS LRDPILHGVIDVIRNAF >gi|223713562|gb|ACDM01000036.1| GENE 61 68321 - 69286 927 321 aa, chain + ## HITS:1 COG:ECs0666 KEGG:ns NR:ns ## COG: ECs0666 COG0320 # Protein_GI_number: 15829920 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 657 100.0 0 MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMR KNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLA QTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRAL DILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGE TNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAA CGPFVRSSYHADLQAKGMEVK >gi|223713562|gb|ACDM01000036.1| GENE 62 69387 - 69596 178 69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022866|ref|YP_528693.1| ribosomal protein L25 [Saccharophagus degradans 2-40] # 1 59 1 59 83 73 57 4e-12 VSMGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAAAKKGADVDL QAEKLSHKE >gi|223713562|gb|ACDM01000036.1| GENE 63 69719 - 70282 611 187 aa, chain - ## HITS:1 COG:ECs0664 KEGG:ns NR:ns ## COG: ECs0664 COG0388 # Protein_GI_number: 15829918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli O157:H7 # 1 187 76 262 262 363 100.0 1e-101 MMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQESRRVDAGNEIAPLL EVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTT CYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRR FAPPQLL >gi|223713562|gb|ACDM01000036.1| GENE 64 70279 - 70506 290 75 aa, chain - ## HITS:1 COG:ECs0664 KEGG:ns NR:ns ## COG: ECs0664 COG0388 # Protein_GI_number: 15829918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli O157:H7 # 1 66 1 66 262 126 100.0 8e-30 MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLARDDHDADLSVKSAQLL EGEFLGLYGEKVNVT >gi|223713562|gb|ACDM01000036.1| GENE 65 70599 - 70982 223 127 aa, chain + ## HITS:1 COG:crcB KEGG:ns NR:ns ## COG: crcB COG0239 # Protein_GI_number: 16128607 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Escherichia coli K12 # 1 127 1 127 127 200 99.0 5e-52 MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIGAFIIGIGFAWFSRMTN IDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWL FLASTAH >gi|223713562|gb|ACDM01000036.1| GENE 66 71036 - 71245 317 69 aa, chain - ## HITS:1 COG:ECs0662 KEGG:ns NR:ns ## COG: ECs0662 COG1278 # Protein_GI_number: 15829916 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 124 100.0 4e-29 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG PSAANVIAL >gi|223713562|gb|ACDM01000036.1| GENE 67 71420 - 71980 491 186 aa, chain - ## HITS:1 COG:no KEGG:B21_00581 NR:ns ## KEGG: B21_00581 # Name: crcA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 186 1 186 186 351 100.0 6e-96 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA WMRFQF >gi|223713562|gb|ACDM01000036.1| GENE 68 72569 - 73954 1463 461 aa, chain + ## HITS:1 COG:ECs0660 KEGG:ns NR:ns ## COG: ECs0660 COG3069 # Protein_GI_number: 15829914 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 461 1 461 461 633 100.0 0 MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAIMGHKVLPSSQASTGYS ATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLM IAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILAPTSGD VVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKEHISHEMLDVSEITT TAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLIASILEFLRSFNTQKVFSGLE VAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVILTML AAVTTGSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVVVAVAGM AKISPFEVVKRTSVPVLVGLVIVIVATELMVPGTAAAVTGK >gi|223713562|gb|ACDM01000036.1| GENE 69 73995 - 74675 263 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 5 223 1 221 226 105 28 6e-22 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG >gi|223713562|gb|ACDM01000036.1| GENE 70 74644 - 76302 1501 552 aa, chain - ## HITS:1 COG:citA KEGG:ns NR:ns ## COG: citA COG3290 # Protein_GI_number: 16128602 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Escherichia coli K12 # 1 552 1 552 552 1111 100.0 0 MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTASFEDYLTLHVRDMAMNQ AKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGDRHSIRLYHPNPEKIGYPM QFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVVSIGYLVSKIDSWRAEFL LPMAGVFVVLLGILMLLSWFLAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDP HGYITAINRNARKMLGLSSPGRQWLGKPIVEVVRPADFFTEQIDEKRQDVVANFNGLSVI ANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLL QMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPGSQ LSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGV PESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKV KPNDSSINPIDR >gi|223713562|gb|ACDM01000036.1| GENE 71 76681 - 77386 543 235 aa, chain + ## HITS:1 COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1 235 30 264 381 489 100.0 1e-138 MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTRDEKLIACGGIAGNIIK CVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYEALFRQCGFSTLTSVPGVM VLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNGHRYLIQQAAAQCDWLHLFLV KEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISRATFPCYFIKEQSVINHC Prediction of potential genes in microbial genomes Time: Mon May 16 18:58:36 2011 Seq name: gi|223713561|gb|ACDM01000037.1| Escherichia sp. 4_1_40B cont1.37, whole genome shotgun sequence Length of sequence - 1341 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1246 1379 ## COG3051 Citrate lyase, alpha subunit Predicted protein(s) >gi|223713561|gb|ACDM01000037.1| GENE 1 2 - 1246 1379 414 aa, chain + ## HITS:1 COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1 414 97 510 510 815 99.0 0 SSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSG ELNIDVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPA SIEQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQS LARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRGASGG HCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAER LQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQVKE Prediction of potential genes in microbial genomes Time: Mon May 16 18:58:49 2011 Seq name: gi|223713560|gb|ACDM01000038.1| Escherichia sp. 4_1_40B cont1.38, whole genome shotgun sequence Length of sequence - 38344 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 21, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.091 + CDS 3 - 212 82 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 2 1 Op 2 5/0.091 + CDS 187 - 1065 610 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 3 1 Op 3 4/0.636 + CDS 1116 - 2579 1676 ## COG0471 Di- and tricarboxylate transporters + Term 2611 - 2652 10.1 + Prom 2596 - 2655 2.6 4 2 Tu 1 4/0.636 + CDS 2675 - 3499 468 ## COG3719 Ribonuclease I + Term 3649 - 3683 5.0 + Prom 3583 - 3642 3.7 5 3 Tu 1 . + CDS 3729 - 4139 432 ## COG0782 Transcription elongation factor + Term 4176 - 4203 0.1 6 4 Tu 1 . - CDS 4370 - 5608 851 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 5633 - 5692 2.0 7 5 Tu 1 . - CDS 5727 - 5933 117 ## EcE24377A_0629 hypothetical protein + Prom 5734 - 5793 3.4 8 6 Tu 1 . + CDS 5829 - 6257 497 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 6277 - 6318 6.2 - Term 6312 - 6347 5.5 9 7 Op 1 11/0.000 - CDS 6378 - 7943 411 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Term 8019 - 8050 4.1 10 7 Op 2 . - CDS 8188 - 8751 623 ## COG0450 Peroxiredoxin - Prom 8815 - 8874 3.9 11 8 Tu 1 . + CDS 9123 - 9869 717 ## COG1651 Protein-disulfide isomerase + Prom 9997 - 10056 6.2 12 9 Tu 1 . + CDS 10077 - 10979 469 ## COG0583 Transcriptional regulator + Prom 11022 - 11081 6.4 13 10 Op 1 8/0.000 + CDS 11126 - 12346 693 ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase 14 10 Op 2 . + CDS 12331 - 12948 542 ## COG1475 Predicted transcriptional regulators + Term 12963 - 13002 0.6 - Term 12874 - 12921 5.0 15 11 Tu 1 . - CDS 12949 - 14109 1001 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 14139 - 14198 5.2 + Prom 14113 - 14172 3.6 16 12 Tu 1 . + CDS 14218 - 15306 1125 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 15391 - 15431 -0.4 17 13 Op 1 9/0.000 - CDS 15316 - 15513 264 ## COG2879 Uncharacterized small protein - Prom 15576 - 15635 3.9 - Term 15534 - 15576 3.5 18 13 Op 2 4/0.636 - CDS 15696 - 17801 2794 ## COG1966 Carbon starvation protein, predicted membrane protein - Prom 17857 - 17916 7.0 - Term 17880 - 17940 0.3 19 14 Op 1 5/0.091 - CDS 17982 - 18395 304 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 20 14 Op 2 5/0.091 - CDS 18398 - 19144 185 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 21 14 Op 3 5/0.091 - CDS 19144 - 20001 1224 ## COG1535 Isochorismate hydrolase 22 14 Op 4 6/0.000 - CDS 20015 - 21625 1611 ## COG1021 Peptide arylation enzymes 23 14 Op 5 . - CDS 21635 - 22810 1181 ## COG1169 Isochorismate synthase - Prom 22865 - 22924 6.3 + Prom 23106 - 23165 2.2 24 15 Tu 1 . + CDS 23185 - 24141 1082 ## COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component 25 16 Tu 1 . - CDS 24145 - 25395 1229 ## COG0477 Permeases of the major facilitator superfamily - Prom 25438 - 25497 3.9 + Prom 25382 - 25441 4.5 26 17 Op 1 8/0.000 + CDS 25494 - 26510 1244 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 27 17 Op 2 7/0.000 + CDS 26507 - 27499 936 ## COG4779 ABC-type enterobactin transport system, permease component 28 17 Op 3 . + CDS 27496 - 28311 197 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 29 18 Tu 1 . - CDS 28308 - 29441 926 ## COG3765 Chain length determinant protein - Prom 29568 - 29627 7.0 30 19 Op 1 2/0.818 - CDS 29657 - 33538 3632 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 31 19 Op 2 2/0.818 - CDS 33535 - 33753 228 ## COG3251 Uncharacterized protein conserved in bacteria 32 19 Op 3 . - CDS 33756 - 34958 787 ## COG2382 Enterochelin esterase and related enzymes - Prom 35005 - 35064 4.8 + Prom 34966 - 35025 4.5 33 20 Tu 1 . + CDS 35201 - 37441 2652 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins + Term 37554 - 37590 2.4 + Prom 37497 - 37556 9.7 34 21 Tu 1 . + CDS 37607 - 38236 418 ## COG2977 Phosphopantetheinyl transferase component of siderophore synthetase Predicted protein(s) >gi|223713560|gb|ACDM01000038.1| GENE 1 3 - 212 82 69 aa, chain + ## HITS:1 COG:ECs0653 KEGG:ns NR:ns ## COG: ECs0653 COG3697 # Protein_GI_number: 15829907 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Escherichia coli O157:H7 # 1 69 115 183 183 143 100.0 7e-35 HPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKTHQLTDLLNRMEALL NDVDACNVN >gi|223713560|gb|ACDM01000038.1| GENE 2 187 - 1065 610 292 aa, chain + ## HITS:1 COG:citG KEGG:ns NR:ns ## COG: citG COG1767 # Protein_GI_number: 16128596 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Escherichia coli K12 # 1 292 1 292 292 560 100.0 1e-160 MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDRINCGAHKDMALEDFHR SALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDMFRATAGVNTHKGSIFSLG LLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTNNSQLTAGQRLYQQLGLTGAR GEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLLLMAINGDTNVASRGGEGGLRWL QREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSPGGSADLLILTWFLAQI >gi|223713560|gb|ACDM01000038.1| GENE 3 1116 - 2579 1676 487 aa, chain + ## HITS:1 COG:ECs0651 KEGG:ns NR:ns ## COG: ECs0651 COG0471 # Protein_GI_number: 15829905 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli O157:H7 # 1 487 1 487 487 867 100.0 0 MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISF IAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVS GLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKS FPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCF LPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGL WVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGF IDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVP MEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGW PILAMWN >gi|223713560|gb|ACDM01000038.1| GENE 4 2675 - 3499 468 274 aa, chain + ## HITS:1 COG:rna KEGG:ns NR:ns ## COG: rna COG3719 # Protein_GI_number: 16128594 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease I # Organism: Escherichia coli K12 # 7 274 1 268 268 551 100.0 1e-157 MSSTPIMKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDR NRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEA RASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRL NQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISI KADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY >gi|223713560|gb|ACDM01000038.1| GENE 5 3729 - 4139 432 136 aa, chain + ## HITS:1 COG:ECs0649 KEGG:ns NR:ns ## COG: ECs0649 COG0782 # Protein_GI_number: 15829903 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1 136 1 136 136 259 100.0 7e-70 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE VLELEYQPEAAGDYLL >gi|223713560|gb|ACDM01000038.1| GENE 6 4370 - 5608 851 412 aa, chain - ## HITS:1 COG:ybdR KEGG:ns NR:ns ## COG: ybdR COG1063 # Protein_GI_number: 16128591 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 412 1 412 412 832 100.0 0 MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHLYRGKIPQVKHGDIFGH EFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYAACENTNAGKGAALNKKQI PAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAK NAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVDHHPYRLHFAADRYGAIPINFDE DSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRR GGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTH YMPFEEAARGYEIFEKREEECRKVILVPGAQSAEAAQKAVSGLVNAMPGGTI >gi|223713560|gb|ACDM01000038.1| GENE 7 5727 - 5933 117 68 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_0629 NR:ns ## KEGG: EcE24377A_0629 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 13 68 1 56 56 89 96.0 3e-17 MNNSVILGEEFSVANSFVAQFHFKYINWHNDCLIHNPFSLLIMNKSFAMIIIFIPDICLV LFPYELFL >gi|223713560|gb|ACDM01000038.1| GENE 8 5829 - 6257 497 142 aa, chain + ## HITS:1 COG:ybdQ KEGG:ns NR:ns ## COG: ybdQ COG0589 # Protein_GI_number: 16128590 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1 142 1 142 142 253 100.0 8e-68 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEE HLQHEAQERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSIST HLLGSNASSVIRHANLPVLVVR >gi|223713560|gb|ACDM01000038.1| GENE 9 6378 - 7943 411 521 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 213 515 2 303 306 162 31 2e-39 MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNSLPV RKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRHIDGDFE FETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQNEITDRNVMGVPAVFVNGKE FGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAIYSARKGIRTGL MGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEG GLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNV KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKTA >gi|223713560|gb|ACDM01000038.1| GENE 10 8188 - 8751 623 187 aa, chain - ## HITS:1 COG:ECs0644 KEGG:ns NR:ns ## COG: ECs0644 COG0450 # Protein_GI_number: 15829898 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Escherichia coli O157:H7 # 1 187 1 187 187 381 100.0 1e-106 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEE LQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADR ATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPS LDLVGKI >gi|223713560|gb|ACDM01000038.1| GENE 11 9123 - 9869 717 248 aa, chain + ## HITS:1 COG:dsbG KEGG:ns NR:ns ## COG: dsbG COG1651 # Protein_GI_number: 16128587 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Escherichia coli K12 # 12 248 32 268 268 474 100.0 1e-134 MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYL TPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYV FADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKT LNIIMGNK >gi|223713560|gb|ACDM01000038.1| GENE 12 10077 - 10979 469 300 aa, chain + ## HITS:1 COG:ybdO KEGG:ns NR:ns ## COG: ybdO COG0583 # Protein_GI_number: 16128586 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 300 1 300 300 563 99.0 1e-160 MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRS GKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCL RQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNR HPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAV TDLLGIVPYELYNFYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF >gi|223713560|gb|ACDM01000038.1| GENE 13 11126 - 12346 693 406 aa, chain + ## HITS:1 COG:ybdN KEGG:ns NR:ns ## COG: ybdN COG3969 # Protein_GI_number: 16128585 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Escherichia coli K12 # 1 406 1 406 406 834 99.0 0 MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICV LFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWV RQPPQDAITDPDFFSFYQPGMTFEQFVREFAEWFSQKRPAAMMIGIRADESYNRFVAIAS LNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTWYANHQSLCNPLYNLMYQAGVPL RHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKP EHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRR ICKVLLNNDYWCRALSFSPTKSKNYQRYNERIKGKRQEWGILCNND >gi|223713560|gb|ACDM01000038.1| GENE 14 12331 - 12948 542 205 aa, chain + ## HITS:1 COG:ybdM KEGG:ns NR:ns ## COG: ybdM COG1475 # Protein_GI_number: 16128584 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 205 5 209 209 408 100.0 1e-114 MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN PNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGY LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV LRLKQINGLQELFADRQYSRAWTVK >gi|223713560|gb|ACDM01000038.1| GENE 15 12949 - 14109 1001 386 aa, chain - ## HITS:1 COG:ybdL KEGG:ns NR:ns ## COG: ybdL COG0436 # Protein_GI_number: 16128583 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 386 1 386 386 770 100.0 0 MTNNPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVIC FDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVW QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD ILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPF PHKLIRLCFAKKESTLLAAAERLRQL >gi|223713560|gb|ACDM01000038.1| GENE 16 14218 - 15306 1125 362 aa, chain + ## HITS:1 COG:ybdH KEGG:ns NR:ns ## COG: ybdH COG0371 # Protein_GI_number: 16128582 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 362 1 362 362 698 100.0 0 MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLP GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYE AVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGG GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESF KA >gi|223713560|gb|ACDM01000038.1| GENE 17 15316 - 15513 264 65 aa, chain - ## HITS:1 COG:ybdD KEGG:ns NR:ns ## COG: ybdD COG2879 # Protein_GI_number: 16132239 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli K12 # 1 65 1 65 65 129 100.0 1e-30 MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG GARCC >gi|223713560|gb|ACDM01000038.1| GENE 18 15696 - 17801 2794 701 aa, chain - ## HITS:1 COG:cstA KEGG:ns NR:ns ## COG: cstA COG1966 # Protein_GI_number: 16128581 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Escherichia coli K12 # 1 701 1 701 701 1283 100.0 0 MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCIYLIAYRFYGLYIAKNV LAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWL LAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAM IVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVA ESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI MRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQA CFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGTADVVASAAQVVSSWG FSITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEA LFILTAVDAGTRAARFMLQDLLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDP LGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQK AFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLA LFSIKTALAALKDPKPTAKETPYEPMPENVEEIVAQAKGAH >gi|223713560|gb|ACDM01000038.1| GENE 19 17982 - 18395 304 137 aa, chain - ## HITS:1 COG:ybdB KEGG:ns NR:ns ## COG: ybdB COG2050 # Protein_GI_number: 16128580 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1 137 1 137 137 273 99.0 6e-74 MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGDASAA LAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFD EQGRRCCTCRLGTAVLG >gi|223713560|gb|ACDM01000038.1| GENE 20 18398 - 19144 185 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 242 4 238 242 75 27 4e-13 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVA QVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR QRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTD MQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVV DGGSTLGA >gi|223713560|gb|ACDM01000038.1| GENE 21 19144 - 20001 1224 285 aa, chain - ## HITS:1 COG:entB_1 KEGG:ns NR:ns ## COG: entB_1 COG1535 # Protein_GI_number: 16128578 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate hydrolase # Organism: Escherichia coli K12 # 1 215 1 215 215 437 100.0 1e-123 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD FSRDEHLMSLKYVAGRSGRVVMTEELLPAPIPASKAALREVILPLLDESDEPFDDDNLID YGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLSREVK >gi|223713560|gb|ACDM01000038.1| GENE 22 20015 - 21625 1611 536 aa, chain - ## HITS:1 COG:entE KEGG:ns NR:ns ## COG: entE COG1021 # Protein_GI_number: 16128577 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Escherichia coli K12 # 1 536 1 536 536 1093 100.0 0 MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADN LACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIE PALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSP ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSS PGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLA SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMC PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID PEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVV KEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA >gi|223713560|gb|ACDM01000038.1| GENE 23 21635 - 22810 1181 391 aa, chain - ## HITS:1 COG:ECs0632 KEGG:ns NR:ns ## COG: ECs0632 COG1169 # Protein_GI_number: 15829886 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Escherichia coli O157:H7 # 1 391 1 391 391 758 100.0 0 MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAVNGDSPDSPFQQKLAAL FADAKAQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEKQASARRFTRSQSLNVVER QAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDAAIDSGVLLERLIAQNPVSYN FHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGNRLLASEKDRH EHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWHLATPFEGKANSQENALTLACLLHP TPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCAKLRENQVRLFA GAGIVPASSPLGEWRETGVKLSTMLNVFGLH >gi|223713560|gb|ACDM01000038.1| GENE 24 23185 - 24141 1082 318 aa, chain + ## HITS:1 COG:ECs0631 KEGG:ns NR:ns ## COG: ECs0631 COG4592 # Protein_GI_number: 15829885 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe2+-enterobactin transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 318 1 318 318 572 98.0 1e-163 MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLESQPQRIVSTSVTLTGSL LAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPDLIL ISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQL AAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQG KRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIYANPLLAHLPAVQNKQVYALGTETF RLDYYSAMQVLDRLKALF >gi|223713560|gb|ACDM01000038.1| GENE 25 24145 - 25395 1229 416 aa, chain - ## HITS:1 COG:ybdA KEGG:ns NR:ns ## COG: ybdA COG0477 # Protein_GI_number: 16128574 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 416 1 416 416 577 100.0 1e-164 MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTL TGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWD GFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYG LAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFRFLLASPLVGGIALLGGLLTMAS AVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLAHSARPGLLMLLSTLGSFL AIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGD AIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLVELRHFRQTPPQVTASDS >gi|223713560|gb|ACDM01000038.1| GENE 26 25494 - 26510 1244 338 aa, chain + ## HITS:1 COG:fepD KEGG:ns NR:ns ## COG: fepD COG0609 # Protein_GI_number: 16128573 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 5 338 1 334 334 452 100.0 1e-127 MEVRMSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIV LDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSS AQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDV YDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVAR TQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFA DIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA >gi|223713560|gb|ACDM01000038.1| GENE 27 26507 - 27499 936 330 aa, chain + ## HITS:1 COG:fepG KEGG:ns NR:ns ## COG: fepG COG4779 # Protein_GI_number: 16128572 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterobactin transport system, permease component # Organism: Escherichia coli K12 # 1 330 1 330 330 468 100.0 1e-132 MIYVSRRLLITCLLLVSACVVAGIWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRL PRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIAL SAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLW NAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLMML VAVVLTAAATALAGPISFIALVAPHIARRISGTARWGLTQAALCGALLLLAADLCAQQLF MPYQLPVGVVTVSLGGIYLIVLLIQESRKK >gi|223713560|gb|ACDM01000038.1| GENE 28 27496 - 28311 197 271 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 8 232 9 228 309 80 25 1e-14 MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERI YGLRCMIIDDPVAGTPLVVPLGRTAPSTANS >gi|223713560|gb|ACDM01000038.1| GENE 29 28308 - 29441 926 377 aa, chain - ## HITS:1 COG:fepE KEGG:ns NR:ns ## COG: fepE COG3765 # Protein_GI_number: 16128570 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli K12 # 1 377 1 377 377 721 100.0 0 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR YAMASRKQDAMMADHLV >gi|223713560|gb|ACDM01000038.1| GENE 30 29657 - 33538 3632 1293 aa, chain - ## HITS:1 COG:entF_1 KEGG:ns NR:ns ## COG: entF_1 COG1020 # Protein_GI_number: 16128569 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Escherichia coli K12 # 1 1060 1 1060 1060 2004 100.0 0 MSQHLPLVAAQPGIWMAEKLSELPSAWSVAHYVELTGEVDSPLLARAVVAGLAQADTLRM RFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQADLQQDLRVDSGKPLVFH QLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTWLRGEPTPASPFTPFADVVEE YQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGRSASADILRLKLEFTDGEFRQLA TQLSGVQRTDLALALAALWLGRLCNRMDYAAGFIFMRRLGSAALTATGPVLNVLPLGIHI AAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAAGDEPLFGPVLNIKVFDYQLDI PDVQAQTHTLATGPVNDLELALFPDVHGDLSIEILANKQRYDEPTLIQHAERLKMLIAQF AADPALLCGDVDIMLPGEYAQLAQLNATQVEIPETTLSALVAEQAAKTPDAPALADARYL FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP DDRLKMMLEDARPSLLITTDDQLPRFSDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYI IFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIA GAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVF CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVW NTGLRILDAMMHPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD VARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGG DARQLVGYLVSQSGLPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPL PELKAQAPGRAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQV ARQVTPGQVMVASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQ FSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLG GTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAA QQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIA ELDIYRQDCAHVDIISPGTFEKIGPIIRATLNR >gi|223713560|gb|ACDM01000038.1| GENE 31 33535 - 33753 228 72 aa, chain - ## HITS:1 COG:Z0726 KEGG:ns NR:ns ## COG: Z0726 COG3251 # Protein_GI_number: 15800300 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 72 1 72 72 115 93.0 2e-26 MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTL TPTNFTQLQEAQ >gi|223713560|gb|ACDM01000038.1| GENE 32 33756 - 34958 787 400 aa, chain - ## HITS:1 COG:fes KEGG:ns NR:ns ## COG: fes COG2382 # Protein_GI_number: 16128568 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Escherichia coli K12 # 27 400 1 374 374 727 100.0 0 MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHH QNSQPQSMQRIAGTNVWQWTTQLNANWRGSYCFIPTERDDIFSVPSPDRLELREGWRKLL PQAIADPLNLQSWKGGRGHAVSALEMPQAPLQPGWDCPQAPEIPAKEIIWKSERLKKSRR VWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHR AHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGC VLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIMRANQALYAQLH PIKESIFWRQVDGGHDALCWRGGLMQGLIDLWQPLFHDRS >gi|223713560|gb|ACDM01000038.1| GENE 33 35201 - 37441 2652 746 aa, chain + ## HITS:1 COG:fepA KEGG:ns NR:ns ## COG: fepA COG4771 # Protein_GI_number: 16128567 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli K12 # 1 746 1 746 746 1444 99.0 0 MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQNLQAPGVSTITADEIRK NPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVR QGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWD AYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYA TTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTNSDSYTRSKYG DETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFNEKATQDFV DIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVST TDRSPYSKAEIFSLFAENNMELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTL KMGIARAYKAPSLYQTNPNYILYSKGQGCYASAGGCYLQGNDDLKAETSINKEIGLEFKR DGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETV MWTNNITYMLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNY KGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGA NYIAGAGAYTYNEPGRTWYMSVNTHF >gi|223713560|gb|ACDM01000038.1| GENE 34 37607 - 38236 418 209 aa, chain + ## HITS:1 COG:entD KEGG:ns NR:ns ## COG: entD COG2977 # Protein_GI_number: 16128566 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phosphopantetheinyl transferase component of siderophore synthetase # Organism: Escherichia coli K12 # 1 209 1 209 209 428 100.0 1e-120 MVDMKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGRKRKTEHLAGRIAA VYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGTTALAVVSRQPIGIDIEEIFSVQTA RELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEIQTDAGFLDYQIISWNKQ QVIIHRENEMFAVHWQIKEKIVITLCQHD Prediction of potential genes in microbial genomes Time: Mon May 16 18:58:58 2011 Seq name: gi|223713559|gb|ACDM01000039.1| Escherichia sp. 4_1_40B cont1.39, whole genome shotgun sequence Length of sequence - 17821 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 20 - 172 158 ## EcHS_A0629 Hok/Gef family protein - Prom 319 - 378 4.0 + Prom 468 - 527 2.5 2 2 Op 1 . + CDS 625 - 1743 922 ## COG2170 Uncharacterized conserved protein 3 2 Op 2 . + CDS 1809 - 2057 344 ## S0495 hypothetical protein + Term 2066 - 2100 -1.0 4 2 Op 3 4/1.000 + CDS 2122 - 2490 322 ## COG2315 Uncharacterized protein conserved in bacteria + Prom 2496 - 2555 3.5 5 2 Op 4 3/1.000 + CDS 2584 - 3237 814 ## COG0778 Nitroreductase + Term 3247 - 3276 3.5 + Prom 3265 - 3324 4.2 6 3 Tu 1 . + CDS 3345 - 4592 1339 ## COG0668 Small-conductance mechanosensitive channel + Term 4602 - 4640 8.5 - Term 4586 - 4632 12.8 7 4 Tu 1 . - CDS 4673 - 6049 1802 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 6079 - 6138 3.5 8 5 Op 1 11/0.000 - CDS 6151 - 9294 3401 ## COG3696 Putative silver efflux pump 9 5 Op 2 3/1.000 - CDS 9306 - 10529 1309 ## COG0845 Membrane-fusion protein 10 5 Op 3 3/1.000 - CDS 10545 - 10877 530 ## COG5569 Uncharacterized conserved protein 11 5 Op 4 . - CDS 10904 - 12283 478 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 - Prom 12363 - 12422 3.9 + Prom 12242 - 12301 2.7 12 6 Op 1 40/0.000 + CDS 12440 - 13123 747 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 13 6 Op 2 . + CDS 13113 - 14555 984 ## COG0642 Signal transduction histidine kinase + Prom 14580 - 14639 5.9 14 7 Op 1 . + CDS 14705 - 16942 1846 ## EcSMS35_0586 bacteriophage N4 adsorption protein B 15 7 Op 2 . + CDS 16929 - 17820 747 ## COG0457 FOG: TPR repeat Predicted protein(s) >gi|223713559|gb|ACDM01000039.1| GENE 1 20 - 172 158 50 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A0629 NR:ns ## KEGG: EcHS_A0629 # Name: not_defined # Def: Hok/Gef family protein # Organism: E.coli_HS # Pathway: not_defined # 1 50 34 83 83 92 100.0 5e-18 MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK >gi|223713559|gb|ACDM01000039.1| GENE 2 625 - 1743 922 372 aa, chain + ## HITS:1 COG:ybdK KEGG:ns NR:ns ## COG: ybdK COG2170 # Protein_GI_number: 16128564 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 372 1 372 372 789 100.0 0 MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLE LATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTL ENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFAS SRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRV MDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPH TGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIG LVKKHCEIWAGD >gi|223713559|gb|ACDM01000039.1| GENE 3 1809 - 2057 344 82 aa, chain + ## HITS:1 COG:no KEGG:S0495 NR:ns ## KEGG: S0495 # Name: ybdJ # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 82 1 82 82 100 98.0 2e-20 MKHPLETLTTAAGILLMAFLSCLLLPAPALGLALAQKLVTMFHLMDLSQLYTLLFCLWFL VLGAIEYFVLRFIWRRWFSLAD >gi|223713559|gb|ACDM01000039.1| GENE 4 2122 - 2490 322 122 aa, chain + ## HITS:1 COG:ECs0617 KEGG:ns NR:ns ## COG: ECs0617 COG2315 # Protein_GI_number: 15829871 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 122 1 122 122 248 100.0 2e-66 MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR PG >gi|223713559|gb|ACDM01000039.1| GENE 5 2584 - 3237 814 217 aa, chain + ## HITS:1 COG:nfnB KEGG:ns NR:ns ## COG: nfnB COG0778 # Protein_GI_number: 16128561 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli K12 # 1 217 1 217 217 425 100.0 1e-119 MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARV AKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKG RKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKE KGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV >gi|223713559|gb|ACDM01000039.1| GENE 6 3345 - 4592 1339 415 aa, chain + ## HITS:1 COG:ybdG KEGG:ns NR:ns ## COG: ybdG COG0668 # Protein_GI_number: 16128560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1 415 1 415 415 801 100.0 0 MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWL QIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLD VILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLM LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQ EINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLP LEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ >gi|223713559|gb|ACDM01000039.1| GENE 7 4673 - 6049 1802 458 aa, chain - ## HITS:1 COG:pheP KEGG:ns NR:ns ## COG: pheP COG1113 # Protein_GI_number: 16128559 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1 458 1 458 458 839 100.0 0 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY GVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELT AAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGL WLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVI LVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINY LLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAF LGMILLLMCTMDDMRLSAILLPVWIVFLFMAFKTLRRK >gi|223713559|gb|ACDM01000039.1| GENE 8 6151 - 9294 3401 1047 aa, chain - ## HITS:1 COG:ybdE KEGG:ns NR:ns ## COG: ybdE COG3696 # Protein_GI_number: 16128558 # Func_class: P Inorganic ion transport and metabolism # Function: Putative silver efflux pump # Organism: Escherichia coli K12 # 1 1047 1 1047 1047 2029 99.0 0 MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI VENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGK LPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVASV GGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTL DDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREV IAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV RSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEE WQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAF TKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTL LVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVP EVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLAN LWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEG GRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSP QALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDL QKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLI ISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAEPSLNN PQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGM ITAPLLSLFIIPAAYKLMWLHRHRVRK >gi|223713559|gb|ACDM01000039.1| GENE 9 9306 - 10529 1309 407 aa, chain - ## HITS:1 COG:ECs0612 KEGG:ns NR:ns ## COG: ECs0612 COG0845 # Protein_GI_number: 15829866 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1 407 1 407 407 771 99.0 0 MKKIALIIGSMIAGGIISAAGFNWFAKAEPPAEKTSTAERKVLFWYDPMYPNTRFDKPGK SPFMDMDLVPKYADEESSASGVRIDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQ YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEG ILERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG MDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEV DNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGNEQRVITVDADGRFVPKRVAVFQA SQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRSESATHAH >gi|223713559|gb|ACDM01000039.1| GENE 10 10545 - 10877 530 110 aa, chain - ## HITS:1 COG:ylcC KEGG:ns NR:ns ## COG: ylcC COG5569 # Protein_GI_number: 16128556 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 110 1 110 110 196 98.0 1e-50 MKKALQVAMFSLFTVIGFNAQANEHHHETMSEVQPQVISATGVVKGVDLESKKITIHHDP IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ >gi|223713559|gb|ACDM01000039.1| GENE 11 10904 - 12283 478 459 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 12 459 11 457 460 188 28 2e-47 MSPCKLLPFCVALALTGCSLAPDYQRPAMPVPQQFSLSQNGLVNAADNYQNAGWRTFFVD NQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGNLKGNTAT TREFSTGLNASLDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQSYFNQQLAY AQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKRQGELAQANN ALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPDIMEAEHALMAANANIGAA RAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDIAEIRQQ QSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYL EVLDAERSLFATRQTLLDLNYARQVNEISLYTALGGGWQ >gi|223713559|gb|ACDM01000039.1| GENE 12 12440 - 13123 747 227 aa, chain + ## HITS:1 COG:ECs0609 KEGG:ns NR:ns ## COG: ECs0609 COG0745 # Protein_GI_number: 15829863 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 227 1 227 227 432 100.0 1e-121 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ >gi|223713559|gb|ACDM01000039.1| GENE 13 13113 - 14555 984 480 aa, chain + ## HITS:1 COG:ybcZ KEGG:ns NR:ns ## COG: ybcZ COG0642 # Protein_GI_number: 16128553 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 480 1 480 480 932 99.0 0 MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIMIHSVKVHFAEQDINDLKEISATLER VLNHPDETQARRLMTLEDIVSGYSNVLISLADSQGKTVYHSPGAPDIREFTRDAIPDKDA RGGEVYLLSGPTIMMPGHGHGHMEHSNWRMINLPVGPLVDGKPIYTLYIALSIDFHLHYI NDLMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSRQIQNITSKDLDVRLDPQTVPIE LEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDV LYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVEL RFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPIA PEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDARGTRFVITLPA >gi|223713559|gb|ACDM01000039.1| GENE 14 14705 - 16942 1846 745 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_0586 NR:ns ## KEGG: EcSMS35_0586 # Name: nfrB # Def: bacteriophage N4 adsorption protein B # Organism: E.coli_SECEC # Pathway: not_defined # 1 745 1 745 745 1509 99.0 0 MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRRIKRKLSVYRRYPRMSY RELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNAPDTQRDVDEV CARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR LFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSELHGKDVPVREALAGQVPSAGVGT CFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKEKGMTEIFVRFPVVDEAKEREQRKF LQHARTSNMICVREYFPDTFSTAVRQKSRWIIGIVFQGFKTHKWTSSLTLNYFLWRDRKG AISNFVSFLAMLVMIQLLLLLAYESLWPDVWHFLSIFSGSAWLMTLLWLNFGLMVNRIVQ RVIFVTGYYGLTQGLLSVLRLFWGNLINFMANWRALKQVLQHGDPRRVAWDKTTHDFPSV TGDTRSLRPLGQILLENQVITEEQLDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQ NGVAWESIDAWQIPSSLIAEMPASVALHYAVLPLRLENDELIVGSEDGIDPVSLAALTRK VGRKVRYVIVLRGQIVTGLRHWYARRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQ FLFAEILTTLGHINRSAINVLLLRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVS MQSLLLKAGLNTEQVAQLESENEGE >gi|223713559|gb|ACDM01000039.1| GENE 15 16929 - 17820 747 297 aa, chain + ## HITS:1 COG:nfrA KEGG:ns NR:ns ## COG: nfrA COG0457 # Protein_GI_number: 16128551 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 1 297 1 297 990 542 100.0 1e-154 MKENNLNRVIGWSGLLLTSLLSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKN NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS LAAIPVEVKSVTTVEELLAQQKACDAAPTLRCRSEVGQNALRLAQLPVARAQLNDATFAA SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRILA LQSQGIFTDPQSYITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS Prediction of potential genes in microbial genomes Time: Mon May 16 18:59:12 2011 Seq name: gi|223713558|gb|ACDM01000040.1| Escherichia sp. 4_1_40B cont1.40, whole genome shotgun sequence Length of sequence - 7400 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 2081 1699 ## COG0457 FOG: TPR repeat 2 1 Op 2 . + CDS 2082 - 2972 575 ## JW0556 hypothetical protein + Term 2983 - 3023 8.1 3 2 Tu 1 . + CDS 3155 - 3916 457 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 4083 - 4126 3.1 - Term 4141 - 4179 0.2 4 3 Tu 1 . - CDS 4212 - 4535 138 ## gi|300897442|ref|ZP_07115865.1| conserved hypothetical protein + Prom 4216 - 4275 3.9 5 4 Op 1 2/0.000 + CDS 4429 - 5382 604 ## COG4571 Outer membrane protease + Term 5402 - 5442 4.5 + Prom 5518 - 5577 5.1 6 4 Op 2 . + CDS 5659 - 7053 291 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 7074 - 7121 10.2 Predicted protein(s) >gi|223713558|gb|ACDM01000040.1| GENE 1 3 - 2081 1699 692 aa, chain + ## HITS:1 COG:nfrA KEGG:ns NR:ns ## COG: nfrA COG0457 # Protein_GI_number: 16128551 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 1 692 299 990 990 1323 100.0 0 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNEQSREAADLLLQRYPFQGDARVSQTL MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPSAWQHRAVAYQAYQVEDYATALAAWQKI SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEKRGLGSNALYWWLHAQRYIPGQPELA LNDLTRSINIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNTQAALGYALWD SGDIAQSREMLEPAHKGLPDDPALIRQLAYVNQRLDDMPATQHYARLVIDDIDNQALITP LTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGAAPGKSYRSYGQL EAEYRIGRNMLLEGDLLSVYSRVFADTGENGVMMPVKNPMSGTGLRWKPLRDQIFFIAVE QQLPLNGQNGASDTMLRASASFFNGGKYSDEWHPNGSGWFAQNLYLDAAQYIRQDIQAWT ADYRVSWHQKVANGQTIEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYDAWPHK VSLGVEYQHTFKAINQRNGERNNAFLTIGVHW >gi|223713558|gb|ACDM01000040.1| GENE 2 2082 - 2972 575 296 aa, chain + ## HITS:1 COG:no KEGG:JW0556 NR:ns ## KEGG: JW0556 # Name: ybcH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 296 1 296 296 580 100.0 1e-164 MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLMSQLRLQGFDTLVLQWT RYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAALESYLNRLLAA DLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAKPVYI SSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKLTAEQRERYLQASADCQSPAPAS GVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCGKDTLYFSLRYLPVAHGILEY >gi|223713558|gb|ACDM01000040.1| GENE 3 3155 - 3916 457 253 aa, chain + ## HITS:1 COG:envY KEGG:ns NR:ns ## COG: envY COG2207 # Protein_GI_number: 16128549 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 253 1 253 253 454 100.0 1e-128 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP LNYLAKQRQKVMW >gi|223713558|gb|ACDM01000040.1| GENE 4 4212 - 4535 138 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300897442|ref|ZP_07115865.1| ## NR: gi|300897442|ref|ZP_07115865.1| conserved hypothetical protein [Escherichia coli MS 198-1] # 1 101 1 101 119 146 95.0 5e-34 MSAFMLSGVNDIVSVEAKELIAIGVVRTIPRSFARIKVLHSIVLMIEYVFFISNLMSQLH IAPLFIFCLVLNDYHNALSVFGLIICYCFMLRFYCVVFYAFVVFLSI >gi|223713558|gb|ACDM01000040.1| GENE 5 4429 - 5382 604 317 aa, chain + ## HITS:1 COG:ECs1663 KEGG:ns NR:ns ## COG: ECs1663 COG4571 # Protein_GI_number: 15830917 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protease # Organism: Escherichia coli O157:H7 # 1 317 1 317 317 597 98.0 1e-170 MRAKLLGIVLTTPIAISSFASTETISFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS QLDWKFNNTAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVEASDNDEHYDPGKRIT YRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNDNTSDYSKNGA GIENYNFITTAGLKYTF >gi|223713558|gb|ACDM01000040.1| GENE 6 5659 - 7053 291 464 aa, chain + ## HITS:1 COG:ECs1662 KEGG:ns NR:ns ## COG: ECs1662 COG0596 # Protein_GI_number: 15830916 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli O157:H7 # 1 464 31 494 494 951 99.0 0 MASQFNHWFGEEKPSPDLLCGYLSVPLKYTDTGGDASYEKKSQVKLALTKLPAKSKHKGS ILIISGGPGLPGINPYINFDWPVTNLRESWDIIGFDPRGVGQSTPTINCRQSDTETQENI TEKQQVLNKINACIHNTGAEVIRHIGSNEAVYDIDRIRQALGDKQLTAVAYSYGTQIAAL YAERFPYNVRSIVLDGVVDIDDLEDNFTWQLKQAQSYQETFDRFASWCARTKSCPLSSDR DKAITQFHELLSKLHHKPLLDSKGENISSDELISLTTDLLLWRSSWPTLATAIRQFSQGI VSNEIETALSAQIASEESSDASGVILCVDQGDEQLTPEERKSRKDALANAFPAINFDNGR SDSPDFCELWPIHSDLNKTRLKNTVLPSGLLFVAHKYDPTTPWINARKMAEKFSSPLLTI NGDGHTLALTGVNLCVDKAVVHHLITPQKIENIYCPGNSEAEIQ Prediction of potential genes in microbial genomes Time: Mon May 16 18:59:26 2011 Seq name: gi|223713557|gb|ACDM01000041.1| Escherichia sp. 4_1_40B cont1.41, whole genome shotgun sequence Length of sequence - 13554 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 8, operones - 5 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 41 - 334 286 ## c3147 hypothetical protein 2 1 Op 2 . - CDS 345 - 1049 85 ## ECIAI39_0534 hypothetical protein 3 1 Op 3 . - CDS 1059 - 1340 318 ## UTI89_C5137 hypothetical protein 4 1 Op 4 . - CDS 1337 - 3286 461 ## UTI89_C5135 hypothetical protein 5 1 Op 5 6/0.000 - CDS 3286 - 3615 202 ## COG4718 Phage-related protein 6 1 Op 6 . - CDS 3612 - 3806 133 ## COG5281 Phage-related minor tail protein - Prom 3975 - 4034 5.9 + Prom 4484 - 4543 3.0 7 2 Tu 1 . + CDS 4569 - 4979 132 ## COG5562 Phage envelope protein + Term 5038 - 5074 1.7 - Term 5215 - 5265 4.8 8 3 Op 1 . - CDS 5266 - 5448 155 ## ECED1_1711 conserved hypothetical protein from phage origin 9 3 Op 2 . - CDS 5520 - 6017 378 ## ECED1_1712 conserved hypothetical protein from phage origin, putative KilA, N-terminal domain - Prom 6181 - 6240 5.5 - Term 6156 - 6188 3.8 10 4 Tu 1 . - CDS 6272 - 6457 138 ## ECO26_0865 putative lipoprotein Rz1 precursor 11 5 Op 1 . - CDS 6653 - 7150 249 ## COG3772 Phage-related lysozyme (muraminidase) 12 5 Op 2 . - CDS 7150 - 7365 201 ## APECO1_513 phage lysis protein - Prom 7398 - 7457 2.6 + Prom 7722 - 7781 5.3 13 6 Tu 1 . + CDS 7955 - 9037 1056 ## COG3203 Outer membrane protein (porin) + Term 9176 - 9206 3.0 - Term 9042 - 9087 11.1 14 7 Op 1 . - CDS 9226 - 9609 315 ## ECS88_1182 putative antitermination protein Q homolog; DLP12 prophage 15 7 Op 2 . - CDS 9627 - 10544 490 ## G2583_5194 hypothetical protein 16 7 Op 3 . - CDS 10624 - 11439 541 ## G2583_5193 KilA-N domain family - Prom 11496 - 11555 3.7 17 8 Op 1 . - CDS 11602 - 11997 258 ## COG4570 Holliday junction resolvase 18 8 Op 2 . - CDS 11994 - 12320 217 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 19 8 Op 3 . - CDS 12317 - 12970 596 ## ECS88_0548 putative phage AdoMet-dependent methyltransferase 20 8 Op 4 . - CDS 12970 - 13458 149 ## ECS88_2902 conserved hypothetical protein; CPS-53 (KpLE1) prophage Predicted protein(s) >gi|223713557|gb|ACDM01000041.1| GENE 1 41 - 334 286 97 aa, chain - ## HITS:1 COG:no KEGG:c3147 NR:ns ## KEGG: c3147 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 97 1 97 97 179 93.0 3e-44 MDITPFLHALCAVAAQVMIGLFAGNWVYGAIAGCTFFIAREHTQAEYRWIEMFGHGKRIN MPWWGGFDPRVWDVASLIDFAVPVVACLLVWLLVNRG >gi|223713557|gb|ACDM01000041.1| GENE 2 345 - 1049 85 234 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_0534 NR:ns ## KEGG: ECIAI39_0534 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 234 1 234 234 450 97.0 1e-125 MATSTVIPGDITTLKGDVSKAKEDISSINGKVSTLQTDMASAQQDISTRYTKTEVDNKLK NKLEVNALESGNYGGDFYPLTGREAFYLWNLGTTTAAANLYLNPDPAISSVLRSTSSIRY KHSVETIDSEHADLIFRMRPVWYRSQCENDRRDWGFYGLIAEEVGEIAPQFVHWRPANEN DAPEAISSNGLVAEGVMYERLVVPLIHHIQKLTERVDELESELKLLSTSQSDIG >gi|223713557|gb|ACDM01000041.1| GENE 3 1059 - 1340 318 93 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C5137 NR:ns ## KEGG: UTI89_C5137 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 93 1 93 93 166 94.0 2e-40 MKDLTLKFADRADFSAFMGSIGYYNDESMQDDILIDVIGNVYKETGELTEDGEPVCVKED GYFVNVRIINDVKTPSIFDEYVVAVEHQLRGWM >gi|223713557|gb|ACDM01000041.1| GENE 4 1337 - 3286 461 649 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C5135 NR:ns ## KEGG: UTI89_C5135 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 24 648 171 791 791 769 84.0 0 MQDNSAQAAAASQTASANSATAAKKSETNAKNSETAAKTSETNAKSSQTAAKTSETNAKA SETAAKNSQVAAAQSESAAAGSATSAAGSATAAANSQKAAKTSETNAKSSQTAAKTSETN AKASETAAKSSQDAAAQSESAAAGSASAAAASATASANSQKAAKTSETNAKTSETAAANS AKASAASQTAAKASEDAAREYASQAAEPYEYVLQPLPDVWIPFNDSLDMITGFSPSYKKI VIGDDEITMPGDKIVKFKRASKATYINKSGVLTEAAIDEPRFERDGLLIEGQRTNYMLNS ESPASWGRSSNMDVPETGTDSFGFTYGKFVCNDSLIGQTSAINMASIAATKSVDVSGDNK YVTTSCRFKTELQVRLRIRFDKYDGSATTFLGDAYIDTQTLETNMTGGAASRITARVRKD EATGWIFAEATIQAIDGELKIGSQIQYSPKQGGATVSGDYIYLATPQVENGPCVSSFIIS GTTAATRASDMVTIPARNNIYKQPISVLIEVNKNWDIVPNGAPRIFDLNATSSFAEESFI FAFRGPTSTVLPGSAYVSVGSPSRGTGNNEVVNTGIYGVKIDKDGGLAASLNGNISSKVS TSWGGAIKSTAIRIGGQTTAGTRHLFGHIRNFRIWHKELTDAQMGESIK >gi|223713557|gb|ACDM01000041.1| GENE 5 3286 - 3615 202 109 aa, chain - ## HITS:1 COG:ECs1644 KEGG:ns NR:ns ## COG: ECs1644 COG4718 # Protein_GI_number: 15830898 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Escherichia coli O157:H7 # 1 109 1 109 109 192 93.0 1e-49 MKTFRWKVKPGMDVASVPSVRKVRFGDGHSQRAPAGLNANLKTYSVTLSVPREEATVLES FLEEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSAEFEQVVN >gi|223713557|gb|ACDM01000041.1| GENE 6 3612 - 3806 133 64 aa, chain - ## HITS:1 COG:ECs1643 KEGG:ns NR:ns ## COG: ECs1643 COG5281 # Protein_GI_number: 15830897 # Func_class: S Function unknown # Function: Phage-related minor tail protein # Organism: Escherichia coli O157:H7 # 1 64 786 849 849 102 85.0 2e-22 MADSRSQASGKFEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARDEIQTQMRDGGLFS GGGR >gi|223713557|gb|ACDM01000041.1| GENE 7 4569 - 4979 132 136 aa, chain + ## HITS:1 COG:ybcV KEGG:ns NR:ns ## COG: ybcV COG5562 # Protein_GI_number: 16128541 # Func_class: R General function prediction only # Function: Phage envelope protein # Organism: Escherichia coli K12 # 1 135 15 149 150 193 77.0 8e-50 MAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVLIKGQG KVVNVRFSKNKCLIEATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYYTFDNS LLFTENIQNTTQIFPH >gi|223713557|gb|ACDM01000041.1| GENE 8 5266 - 5448 155 60 aa, chain - ## HITS:1 COG:no KEGG:ECED1_1711 NR:ns ## KEGG: ECED1_1711 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_ED1a # Pathway: not_defined # 1 60 26 85 85 87 93.0 1e-16 MMEALASVDEFGEQLRLNGCVNHHFVSYMMRNSIMQAFMDMAKAERKEERRRKRAEAKAK >gi|223713557|gb|ACDM01000041.1| GENE 9 5520 - 6017 378 165 aa, chain - ## HITS:1 COG:no KEGG:ECED1_1712 NR:ns ## KEGG: ECED1_1712 # Name: not_defined # Def: conserved hypothetical protein from phage origin, putative KilA, N-terminal domain # Organism: E.coli_ED1a # Pathway: not_defined # 1 165 24 188 188 340 97.0 1e-92 MKSLTLFNQPIRIGEDGMICLTDMWKASGKSESESPYHYLRNKQTKEFLAELEKNHESVV FTERGVHGGTYGGKFVAYDYAAWLNPGFKYAAYKVLDDYFTGELQHRNSLSAQLNMKCHE FDQKKDMASFCGQGLAAWRYTKPVLVAEINSLANQLQITIPGLPG >gi|223713557|gb|ACDM01000041.1| GENE 10 6272 - 6457 138 61 aa, chain - ## HITS:1 COG:no KEGG:ECO26_0865 NR:ns ## KEGG: ECO26_0865 # Name: not_defined # Def: putative lipoprotein Rz1 precursor # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 61 1 61 61 92 96.0 5e-18 MLTRLSKVSVLMFLLGVSACKSPPPVQSQRPEPAAWAMEKAQDLQQMLNSIITVSEVEST R >gi|223713557|gb|ACDM01000041.1| GENE 11 6653 - 7150 249 165 aa, chain - ## HITS:1 COG:ybcS KEGG:ns NR:ns ## COG: ybcS COG3772 # Protein_GI_number: 16128538 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Escherichia coli K12 # 1 165 1 165 165 297 95.0 7e-81 MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVRHNPYKDIVGVWTVCYGHTGKDI IPGKTYTEAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLL RKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ >gi|223713557|gb|ACDM01000041.1| GENE 12 7150 - 7365 201 71 aa, chain - ## HITS:1 COG:no KEGG:APECO1_513 NR:ns ## KEGG: APECO1_513 # Name: not_defined # Def: phage lysis protein # Organism: E.coli_APEC # Pathway: not_defined # 1 70 30 99 100 130 100.0 1e-29 MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKI KEDKRKAARGG >gi|223713557|gb|ACDM01000041.1| GENE 13 7955 - 9037 1056 360 aa, chain + ## HITS:1 COG:nmpC KEGG:ns NR:ns ## COG: nmpC COG3203 # Protein_GI_number: 16128536 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 342 21 367 375 549 91.0 1e-156 MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYAR LGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYG VAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKND RTDVTEANGDGFGFSTTYEYEGFGVGATYAKSDRTDGQVAYGKSKFNASGKNAEVWAAGL KYDANNIYLATTYSETQNMTVFGNNHIANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDL GVHGDRDLVKYVDVGATYYFNKNMSTFVDYKINLIDDSKFTKTAGIDTDDIVAVGLVYQF >gi|223713557|gb|ACDM01000041.1| GENE 14 9226 - 9609 315 127 aa, chain - ## HITS:1 COG:no KEGG:ECS88_1182 NR:ns ## KEGG: ECS88_1182 # Name: ybcQ # Def: putative antitermination protein Q homolog; DLP12 prophage # Organism: E.coli_S88 # Pathway: not_defined # 1 127 1 127 127 251 100.0 5e-66 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARL KKNNSDLHDLLVDYYVCGMTFMSLASKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLDMD IVANNSN >gi|223713557|gb|ACDM01000041.1| GENE 15 9627 - 10544 490 305 aa, chain - ## HITS:1 COG:no KEGG:G2583_5194 NR:ns ## KEGG: G2583_5194 # Name: ydfU # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 305 1 305 305 622 100.0 1e-177 MPLFMQGRVLLEPEPERYSSFASGAVPAASQPLADDPAVRAVFRNEAVIRRAGGVECLES WLLREKGCQWPHSDWHSENMTTMRHAPGAIRLCWHCDNQLRDQFTERLESMATDNCARWV LSVVRRDLGFDDSHVVTMPELCWWLIRNDLADALPESAARKALRLPKPVVPSVTRESDLV PSVPATSIIQDKAKKVLALKVDPESPESFMLRPKRHRWVNEKYTRWVKTQPCACCGKPAD DPHHLIGHGQGGMGTKAHDLFVLPLCRKHHDELHADTVAFEEKYGSQLELIFRFIDRALA IGVLA >gi|223713557|gb|ACDM01000041.1| GENE 16 10624 - 11439 541 271 aa, chain - ## HITS:1 COG:no KEGG:G2583_5193 NR:ns ## KEGG: G2583_5193 # Name: kilA # Def: KilA-N domain family # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 271 1 271 271 535 100.0 1e-151 MNQLLVIDGVSVRQYFESNYCLNDLQKAALLAAGENRSSRSLEVHEFMRRPETKALVELL EEETTGDSRSIPVITIQGRNGGTYVCKELVYAYAMWISPAFSLKVIRTFDALHNSSPEET TSDKIKSGVILLESAAKTLNLSNSSKLGAYQKLSKVAGLPELMPIYAIDAPADAPDGSSR PTLSLSALLKQYGIRLTANQAYHQMAKLGIVEQRERYSRTAINNIKKFWSLTAKGCMFGK NITSPANPRETQPHFFESRFPELLKLLDTVH >gi|223713557|gb|ACDM01000041.1| GENE 17 11602 - 11997 258 131 aa, chain - ## HITS:1 COG:ECs2751 KEGG:ns NR:ns ## COG: ECs2751 COG4570 # Protein_GI_number: 15832005 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1 124 3 119 119 87 41.0 8e-18 MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAIVEQLRRLPKPTSAPAS VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK YEKASCKLATR >gi|223713557|gb|ACDM01000041.1| GENE 18 11994 - 12320 217 108 aa, chain - ## HITS:1 COG:HI0749 KEGG:ns NR:ns ## COG: HI0749 COG1974 # Protein_GI_number: 16272690 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Haemophilus influenzae # 1 90 3 92 209 70 41.0 7e-13 MTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGVITIKR GVARGITLHTVVKDDDSEAVGIIRSLLAGEENARLRAAHWLHERGLKV >gi|223713557|gb|ACDM01000041.1| GENE 19 12317 - 12970 596 217 aa, chain - ## HITS:1 COG:no KEGG:ECS88_0548 NR:ns ## KEGG: ECS88_0548 # Name: not_defined # Def: putative phage AdoMet-dependent methyltransferase # Organism: E.coli_S88 # Pathway: not_defined # 1 217 12 228 228 446 99.0 1e-124 MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNTKCAAY YTAEDNALAHDWSERLAELKGAAFGNPPYSRASQHEGQYITGMRYIMKHASAMRDKGGRY VFLIKAATSEVWWPEDADHIAFIRGRIGFELPAWFIPKDEKQVPTGAFFAGAIAVFDKTW KGPAISYIGRDELEACGEAFLAQVRQQAEKLVREMAA >gi|223713557|gb|ACDM01000041.1| GENE 20 12970 - 13458 149 162 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2902 NR:ns ## KEGG: ECS88_2902 # Name: yfdN # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.coli_S88 # Pathway: not_defined # 1 162 3 164 164 289 98.0 3e-77 MSLLNEVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFP RLTERAQEPEPQPVRETRPARNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAF RESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA Prediction of potential genes in microbial genomes Time: Mon May 16 19:00:19 2011 Seq name: gi|223713556|gb|ACDM01000042.1| Escherichia sp. 4_1_40B cont1.42, whole genome shotgun sequence Length of sequence - 39518 bp Number of predicted genes - 37, with homology - 37 Number of transcription units - 19, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 91 - 150 1.8 1 1 Tu 1 1/1.000 + CDS 185 - 1348 262 ## COG0582 Integrase - TRNA 1364 - 1440 89.4 # Arg TCT 0 0 + Prom 1416 - 1475 1.7 2 2 Tu 1 . + CDS 1683 - 2315 292 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 2475 - 2517 0.6 - Term 2102 - 2144 -0.3 3 3 Op 1 4/0.750 - CDS 2318 - 2833 164 ## COG3539 P pilus assembly protein, pilin FimA 4 3 Op 2 6/0.125 - CDS 2844 - 3851 714 ## COG3539 P pilus assembly protein, pilin FimA 5 3 Op 3 10/0.000 - CDS 3864 - 6473 1614 ## COG3188 P pilus assembly protein, porin PapC 6 3 Op 4 7/0.125 - CDS 6504 - 7172 209 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 7230 - 7289 6.0 - Term 7233 - 7281 0.1 7 4 Tu 1 . - CDS 7416 - 7958 213 ## COG3539 P pilus assembly protein, pilin FimA - Prom 8078 - 8137 7.1 + Prom 8142 - 8201 5.5 8 5 Op 1 2/0.875 + CDS 8438 - 9304 888 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 9 5 Op 2 1/1.000 + CDS 9306 - 9518 308 ## COG2501 Uncharacterized conserved protein + Term 9527 - 9560 6.1 10 6 Tu 1 . + CDS 9626 - 10147 340 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Term 10136 - 10171 7.4 11 7 Tu 1 . - CDS 10183 - 11568 1795 ## COG0215 Cysteinyl-tRNA synthetase - Prom 11603 - 11662 3.6 + Prom 11562 - 11621 4.3 12 8 Op 1 8/0.125 + CDS 11742 - 12236 570 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 13 8 Op 2 5/0.125 + CDS 12239 - 12961 605 ## COG2908 Uncharacterized protein conserved in bacteria + Prom 12977 - 13036 3.4 14 9 Op 1 29/0.000 + CDS 13079 - 13588 538 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 15 9 Op 2 . + CDS 13585 - 14652 1326 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 16 10 Op 1 . - CDS 14847 - 15740 1035 ## COG0549 Carbamate kinase 17 10 Op 2 . - CDS 15737 - 16552 500 ## EcolC_3102 putative carboxylase 18 10 Op 3 . - CDS 16563 - 17822 1220 ## EC55989_0533 hypothetical protein 19 10 Op 4 . - CDS 17832 - 19499 1731 ## COG0074 Succinyl-CoA synthetase, alpha subunit - Prom 19677 - 19736 4.2 + Prom 19604 - 19663 4.4 20 11 Op 1 4/0.750 + CDS 19816 - 20865 910 ## COG2055 Malate/L-lactate dehydrogenases 21 11 Op 2 4/0.750 + CDS 20887 - 22122 1110 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 22 11 Op 3 . + CDS 22133 - 22918 969 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization + Term 22961 - 22992 4.1 23 12 Op 1 2/0.875 - CDS 23146 - 24291 1079 ## COG1929 Glycerate kinase 24 12 Op 2 2/0.875 - CDS 24313 - 25614 1047 ## COG2233 Xanthine/uracil permeases - Term 25624 - 25656 3.0 25 13 Op 1 2/0.875 - CDS 25671 - 27032 1564 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 26 13 Op 2 . - CDS 27092 - 28546 1431 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases - Prom 28601 - 28660 8.1 27 14 Op 1 8/0.125 - CDS 28715 - 29593 1063 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 28 14 Op 2 8/0.125 - CDS 29693 - 30469 846 ## COG3622 Hydroxypyruvate isomerase 29 14 Op 3 4/0.750 - CDS 30482 - 32263 2197 ## COG3960 Glyoxylate carboligase - Prom 32284 - 32343 4.4 - Term 32310 - 32340 3.0 30 15 Tu 1 4/0.750 - CDS 32353 - 33123 658 ## COG1414 Transcriptional regulator - Prom 33166 - 33225 3.1 31 16 Tu 1 . - CDS 33246 - 33728 505 ## COG3194 Ureidoglycolate hydrolase - Prom 33790 - 33849 5.0 + Prom 33835 - 33894 5.6 32 17 Op 1 4/0.750 + CDS 33958 - 34884 614 ## COG0583 Transcriptional regulator + Term 34895 - 34944 2.7 33 17 Op 2 . + CDS 34953 - 36047 1150 ## COG2603 Predicted ATPase + Prom 36070 - 36129 3.0 34 18 Tu 1 . + CDS 36163 - 36534 316 ## SDY_0400 hypothetical protein + Term 36641 - 36682 5.1 - Term 37449 - 37517 -0.1 35 19 Op 1 . - CDS 37520 - 38230 138 ## COG3209 Rhs family protein 36 19 Op 2 . - CDS 38230 - 38574 147 ## B21_00454 hypothetical protein 37 19 Op 3 . - CDS 38638 - 39510 227 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713556|gb|ACDM01000042.1| GENE 1 185 - 1348 262 387 aa, chain + ## HITS:1 COG:intD KEGG:ns NR:ns ## COG: intD COG0582 # Protein_GI_number: 16128520 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 1 387 1 387 387 709 99.0 0 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH ARKIDDIFGDNVPNMSHCGIMEDIKKA >gi|223713556|gb|ACDM01000042.1| GENE 2 1683 - 2315 292 210 aa, chain + ## HITS:1 COG:ZfimZ KEGG:ns NR:ns ## COG: ZfimZ COG2197 # Protein_GI_number: 15800272 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 EDL933 # 1 210 22 231 231 393 99.0 1e-109 MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLP GTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI LSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKT VSAHKSNIYGKLGLHSIVELIDYAKLYELI >gi|223713556|gb|ACDM01000042.1| GENE 3 2318 - 2833 164 171 aa, chain - ## HITS:1 COG:sfmF KEGG:ns NR:ns ## COG: sfmF COG3539 # Protein_GI_number: 16128518 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 171 1 171 171 331 100.0 4e-91 MRRVLFSCFCGLLWSSSGWAVDPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQ LLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTVAIELRNSDR SRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN >gi|223713556|gb|ACDM01000042.1| GENE 4 2844 - 3851 714 335 aa, chain - ## HITS:1 COG:ECs0595 KEGG:ns NR:ns ## COG: ECs0595 COG3539 # Protein_GI_number: 15829849 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 11 335 1 325 325 645 99.0 0 MKIICRLLLAMACLCLANISWATVCANSTGVAEDEHYDLSNIFNSTNNQPGQIVVLPEKS GWVGVSAICPPGTLVNYTYRSYVTNFIVQETIDNYKYMQLNDYLLGAMSLVDSVMDIQFP PQNYIRMGTDPNVSQNLPFGVMDSRLIFRLKVIRPFINMVEIPRQVMFTVYVTSTPYDPL VTPVYTISFGGRVEVPQNCELNAGQIVEFDFGDIGASLFSAAGPGNRPAGVMPQTKSIAV KCTNVAAQAYLTMRLEASAVSGQAMVSDNQDLGFIVADQNDTPITPNDLNSVIPFRLDAA AAANVTLRAWPISITGQKPTEGPFSALGYLRVDYQ >gi|223713556|gb|ACDM01000042.1| GENE 5 3864 - 6473 1614 869 aa, chain - ## HITS:1 COG:ECs0594 KEGG:ns NR:ns ## COG: ECs0594 COG3188 # Protein_GI_number: 15829848 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 1 869 1 869 869 1727 99.0 0 MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG RFKFDLTAGDFRSGNSQQSSPFFFQGTVLGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG NWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS RCIAHYVLPKQSLQQAVTVISAVCTHPGS >gi|223713556|gb|ACDM01000042.1| GENE 6 6504 - 7172 209 222 aa, chain - ## HITS:1 COG:sfmC KEGG:ns NR:ns ## COG: sfmC COG3121 # Protein_GI_number: 16128515 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 222 9 230 230 424 100.0 1e-119 MLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGV KEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVL QLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLG NAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN >gi|223713556|gb|ACDM01000042.1| GENE 7 7416 - 7958 213 180 aa, chain - ## HITS:1 COG:ECs0592 KEGG:ns NR:ns ## COG: ECs0592 COG3539 # Protein_GI_number: 15829846 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1 180 12 191 191 264 100.0 8e-71 MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTD IFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVG IEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE >gi|223713556|gb|ACDM01000042.1| GENE 8 8438 - 9304 888 288 aa, chain + ## HITS:1 COG:ECs0591 KEGG:ns NR:ns ## COG: ECs0591 COG0190 # Protein_GI_number: 15829845 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Escherichia coli O157:H7 # 1 288 1 288 288 569 100.0 1e-162 MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEE VGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDV DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKV VGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQGE >gi|223713556|gb|ACDM01000042.1| GENE 9 9306 - 9518 308 70 aa, chain + ## HITS:1 COG:ybcJ KEGG:ns NR:ns ## COG: ybcJ COG2501 # Protein_GI_number: 16128512 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 70 8 77 77 127 100.0 7e-30 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS FAGHSVQVVA >gi|223713556|gb|ACDM01000042.1| GENE 10 9626 - 10147 340 173 aa, chain + ## HITS:1 COG:ybcI KEGG:ns NR:ns ## COG: ybcI COG1988 # Protein_GI_number: 16128511 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 173 1 173 173 285 97.0 3e-77 MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGIAYGNVFGHRGF THSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWS DERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGILLMGMLWWHRR >gi|223713556|gb|ACDM01000042.1| GENE 11 10183 - 11568 1795 461 aa, chain - ## HITS:1 COG:ECs0588 KEGG:ns NR:ns ## COG: ECs0588 COG0215 # Protein_GI_number: 15829842 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 461 1 461 461 918 99.0 0 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK LKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAE IIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMD FVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIA QSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRS QLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLF DMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADGSEVAEIEALI QQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK >gi|223713556|gb|ACDM01000042.1| GENE 12 11742 - 12236 570 164 aa, chain + ## HITS:1 COG:ECs0587 KEGG:ns NR:ns ## COG: ECs0587 COG0652 # Protein_GI_number: 15829841 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Escherichia coli O157:H7 # 1 164 1 164 164 328 100.0 2e-90 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMK QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY CVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE >gi|223713556|gb|ACDM01000042.1| GENE 13 12239 - 12961 605 240 aa, chain + ## HITS:1 COG:ECs0586 KEGG:ns NR:ns ## COG: ECs0586 COG2908 # Protein_GI_number: 15829840 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 240 1 240 240 491 99.0 1e-139 MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMA AAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCT DDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVV SAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF >gi|223713556|gb|ACDM01000042.1| GENE 14 13079 - 13588 538 169 aa, chain + ## HITS:1 COG:ECs0585 KEGG:ns NR:ns ## COG: ECs0585 COG0041 # Protein_GI_number: 15829839 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Escherichia coli O157:H7 # 1 169 1 169 169 280 100.0 1e-75 MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEE NGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLA IGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA >gi|223713556|gb|ACDM01000042.1| GENE 15 13585 - 14652 1326 355 aa, chain + ## HITS:1 COG:purK KEGG:ns NR:ns ## COG: purK COG0026 # Protein_GI_number: 16128506 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Escherichia coli K12 # 1 355 1 355 355 696 99.0 0 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTR ELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVK RRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLT HNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELA PRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLV HLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG >gi|223713556|gb|ACDM01000042.1| GENE 16 14847 - 15740 1035 297 aa, chain - ## HITS:1 COG:arcC KEGG:ns NR:ns ## COG: arcC COG0549 # Protein_GI_number: 16128505 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 297 1 297 297 551 99.0 1e-157 MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLAL QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP EKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI CSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL >gi|223713556|gb|ACDM01000042.1| GENE 17 15737 - 16552 500 271 aa, chain - ## HITS:1 COG:no KEGG:EcolC_3102 NR:ns ## KEGG: EcolC_3102 # Name: not_defined # Def: putative carboxylase # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 271 1 271 271 526 98.0 1e-148 MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRKGSGFGPGGWVLRRAQ FDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETG LFGPLAMAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAA WYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAV AIDSLLALGHTSGADTLLGFWLGQQLLQGTP >gi|223713556|gb|ACDM01000042.1| GENE 18 16563 - 17822 1220 419 aa, chain - ## HITS:1 COG:no KEGG:EC55989_0533 NR:ns ## KEGG: EC55989_0533 # Name: ylbE # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 419 1 419 419 814 99.0 0 MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNQGKTLLHAGPPMRWQEMTGPMKG ACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDG NRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMEHGIDLTAMMAQGI TMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAA MDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMG DSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQG ACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG >gi|223713556|gb|ACDM01000042.1| GENE 19 17832 - 19499 1731 555 aa, chain - ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 555 1 555 555 1023 98.0 0 MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNAT PNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDASL ALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKSRAREKGLLVMGPDCGTSMI AGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISA LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVW FASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADD THHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIG FGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVS SLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPV AGGNKKLARLLERLQ >gi|223713556|gb|ACDM01000042.1| GENE 20 19816 - 20865 910 349 aa, chain + ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1 349 1 349 349 708 100.0 0 MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGG TNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAI SYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQ AWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLL GLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFN QVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ >gi|223713556|gb|ACDM01000042.1| GENE 21 20887 - 22122 1110 411 aa, chain + ## HITS:1 COG:ylbB KEGG:ns NR:ns ## COG: ylbB COG0624 # Protein_GI_number: 16128500 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1 411 1 411 411 876 100.0 0 MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVG NLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEV VAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPR QDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVY AFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQ QLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDA QIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK >gi|223713556|gb|ACDM01000042.1| GENE 22 22133 - 22918 969 261 aa, chain + ## HITS:1 COG:ylbA KEGG:ns NR:ns ## COG: ylbA COG3257 # Protein_GI_number: 16128499 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Escherichia coli K12 # 1 261 1 261 261 495 99.0 1e-140 MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFV DYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFV NAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILPDFLPKELGFDMN MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYG VGRGEAFSYIYSKDCNRDVEI >gi|223713556|gb|ACDM01000042.1| GENE 23 23146 - 24291 1079 381 aa, chain - ## HITS:1 COG:ybbZ KEGG:ns NR:ns ## COG: ybbZ COG1929 # Protein_GI_number: 16128498 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Escherichia coli K12 # 1 381 1 381 381 651 100.0 0 MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNI VTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRH ALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECD PRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEIN VCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTA GGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGET NLFNSARNIACAIKIGQGIKN >gi|223713556|gb|ACDM01000042.1| GENE 24 24313 - 25614 1047 433 aa, chain - ## HITS:1 COG:ECs0575 KEGG:ns NR:ns ## COG: ECs0575 COG2233 # Protein_GI_number: 15829829 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Escherichia coli O157:H7 # 1 433 3 435 435 748 100.0 0 MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFA QAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFS GLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVM CLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPG IILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFS PFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLL FSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLA VLMDNLIPWERIE >gi|223713556|gb|ACDM01000042.1| GENE 25 25671 - 27032 1564 453 aa, chain - ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 453 1 453 453 946 100.0 0 MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHT HISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA AQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELG QPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHV CHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM WEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMF GKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGA RITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ >gi|223713556|gb|ACDM01000042.1| GENE 26 27092 - 28546 1431 484 aa, chain - ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 806 98.0 0 MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTF SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWF GLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVL NKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVW AAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDI VQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLL ICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDN GFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQ KTIG >gi|223713556|gb|ACDM01000042.1| GENE 27 28715 - 29593 1063 292 aa, chain - ## HITS:1 COG:ybbQ KEGG:ns NR:ns ## COG: ybbQ COG2084 # Protein_GI_number: 16128493 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1 292 1 292 292 551 100.0 1e-157 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIF IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA >gi|223713556|gb|ACDM01000042.1| GENE 28 29693 - 30469 846 258 aa, chain - ## HITS:1 COG:gip KEGG:ns NR:ns ## COG: gip COG3622 # Protein_GI_number: 16128492 # Func_class: G Carbohydrate transport and metabolism # Function: Hydroxypyruvate isomerase # Organism: Escherichia coli K12 # 1 258 1 258 258 556 100.0 1e-158 MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVEFMFPYDYDIEELKHVLASNKLEHTLHN LPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA TLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIY HMQRMEGELTNTMTQWADKIGHLQIADNPHRGEPGTGEINYDYLFKVIENSDYNGWVGCE YKPQTTTEAGLRWMDPYR >gi|223713556|gb|ACDM01000042.1| GENE 29 30482 - 32263 2197 593 aa, chain - ## HITS:1 COG:ECs0568 KEGG:ns NR:ns ## COG: ECs0568 COG3960 # Protein_GI_number: 15829822 # Func_class: R General function prediction only # Function: Glyoxylate carboligase # Organism: Escherichia coli O157:H7 # 1 593 1 593 593 1206 100.0 0 MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEG YTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIE AIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEP LPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMG WGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVH IDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLL RKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGP LGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIR QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKA LMAQYRVPVVVEVILERVTNISMGSELDNVMEFEDIADNAADAPTETCFMHYE >gi|223713556|gb|ACDM01000042.1| GENE 30 32353 - 33123 658 256 aa, chain - ## HITS:1 COG:ECs0567 KEGG:ns NR:ns ## COG: ECs0567 COG1414 # Protein_GI_number: 15829821 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 256 16 271 271 496 99.0 1e-140 MAQKGAQALERGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ LGWWHIGLGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLEC KSMVRMCAPLGSRLPLHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKD LEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVR DTARDISTALGLKAHP >gi|223713556|gb|ACDM01000042.1| GENE 31 33246 - 33728 505 160 aa, chain - ## HITS:1 COG:ECs0566 KEGG:ns NR:ns ## COG: ECs0566 COG3194 # Protein_GI_number: 15829820 # Func_class: F Nucleotide transport and metabolism # Function: Ureidoglycolate hydrolase # Organism: Escherichia coli O157:H7 # 1 160 1 160 160 331 100.0 3e-91 MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDRTLISINRAQ PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDLSTLRAFITNGEQGVNYHR NVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA >gi|223713556|gb|ACDM01000042.1| GENE 32 33958 - 34884 614 308 aa, chain + ## HITS:1 COG:ECs0565 KEGG:ns NR:ns ## COG: ECs0565 COG0583 # Protein_GI_number: 15829819 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 308 1 308 308 612 100.0 1e-175 MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTA AGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINNLLYNPQAVAQLLAWLNERYP FTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSLDPLGSVQWRFVMAADHPLA NVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF LPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL EIFGNPRS >gi|223713556|gb|ACDM01000042.1| GENE 33 34953 - 36047 1150 364 aa, chain + ## HITS:1 COG:ybbB KEGG:ns NR:ns ## COG: ybbB COG2603 # Protein_GI_number: 16128487 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1 364 1 364 364 724 100.0 0 MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGS DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPL VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG RTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIA VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE LAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW VKAR >gi|223713556|gb|ACDM01000042.1| GENE 34 36163 - 36534 316 123 aa, chain + ## HITS:1 COG:no KEGG:SDY_0400 NR:ns ## KEGG: SDY_0400 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 123 13 135 135 238 100.0 4e-62 MLHTANPVIKHKAGLLNLAEELSNVSKACKIMGVSRDTFYRYRELVAEGGVDAQINRSRR APNLKNRTDEATEQAVVDYAVAFPTHGQHRASNELRKQGVFISDSGVRSVWLLHNLENLK RRY >gi|223713556|gb|ACDM01000042.1| GENE 35 37520 - 38230 138 236 aa, chain - ## HITS:1 COG:ECs0560 KEGG:ns NR:ns ## COG: ECs0560 COG3209 # Protein_GI_number: 15829814 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 2 236 1164 1398 1398 486 97.0 1e-137 MLALMDADGNIAWSGEYDEWGNQLNEENPHHLHQPYRLPGQQYDKESGLYYNRNRYYDPL QGRYITQDPIGLEGGWSLYAYPLNPVNGIDPLGLSPADVALIRRKDQLNHQRAWDILSDT YEDMKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRDYGLNLFGMYGRKV KLSHSEMIEDNKKDLAVNDHGLTCPSTTDCSDRCSDYINPEHKKTIKALQDAGYLK >gi|223713556|gb|ACDM01000042.1| GENE 36 38230 - 38574 147 114 aa, chain - ## HITS:1 COG:no KEGG:B21_00454 NR:ns ## KEGG: B21_00454 # Name: ybbC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 114 9 122 122 221 100.0 9e-57 MLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKYSVKNTVKTETMAIQLAEIYVRYRY GERIAEEEKPYLITELPDSWVVEGAKLPYEVAGGVFIIEINKKNGCVLNFLHSK >gi|223713556|gb|ACDM01000042.1| GENE 37 38638 - 39510 227 290 aa, chain - ## HITS:1 COG:rhsD KEGG:ns NR:ns ## COG: rhsD COG3209 # Protein_GI_number: 16128481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 290 1137 1426 1426 604 99.0 1e-173 MEQLARQVEPEYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHV YQPYRLPGQQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPM GLLQTWDDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIV CKDTNGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDK NLVRSKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD Prediction of potential genes in microbial genomes Time: Mon May 16 19:01:21 2011 Seq name: gi|223713555|gb|ACDM01000043.1| Escherichia sp. 4_1_40B cont1.43, whole genome shotgun sequence Length of sequence - 147848 bp Number of predicted genes - 141, with homology - 140 Number of transcription units - 86, operones - 32 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2612 1354 ## COG3209 Rhs family protein - Prom 2656 - 2715 11.2 - Term 2983 - 3036 5.5 2 2 Op 1 11/0.056 - CDS 3043 - 5457 2586 ## COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 3 2 Op 2 . - CDS 5454 - 6140 313 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Prom 5797 - 5856 1.9 4 3 Op 1 5/0.222 + CDS 6078 - 6734 554 ## COG2755 Lysophospholipase L1 and related esterases 5 3 Op 2 3/0.611 + CDS 6724 - 7533 229 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 6 3 Op 3 . + CDS 7594 - 8448 1340 ## COG3118 Thioredoxin domain-containing protein + Term 8483 - 8526 9.1 - Term 8460 - 8510 12.8 7 4 Op 1 4/0.500 - CDS 8511 - 9290 834 ## COG0390 ABC-type uncharacterized transport system, permease component 8 4 Op 2 . - CDS 9277 - 9954 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 9981 - 10040 3.8 + Prom 9945 - 10004 4.0 9 5 Op 1 26/0.000 + CDS 10100 - 11017 1383 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 10 5 Op 2 . + CDS 11014 - 11472 412 ## COG1585 Membrane protein implicated in regulation of membrane protease activity 11 6 Tu 1 . - CDS 11473 - 11880 433 ## COG0789 Predicted transcriptional regulators - Prom 11920 - 11979 3.8 12 7 Op 1 4/0.500 - CDS 12005 - 13294 1498 ## COG0531 Amino acid transporters 13 7 Op 2 . - CDS 13300 - 14232 925 ## COG2066 Glutaminase - Prom 14314 - 14373 3.4 + Prom 14192 - 14251 7.1 14 8 Tu 1 . + CDS 14494 - 16998 2802 ## COG2217 Cation transport ATPase + Term 17015 - 17046 0.7 15 9 Tu 1 . - CDS 17314 - 17655 345 ## COG3093 Plasmid maintenance system antidote protein - Prom 17698 - 17757 4.9 + Prom 17650 - 17709 2.7 16 10 Tu 1 5/0.222 + CDS 17793 - 18587 759 ## COG3735 Uncharacterized protein conserved in bacteria + Term 18640 - 18688 -0.1 + Prom 18591 - 18650 7.6 17 11 Tu 1 . + CDS 18791 - 19270 738 ## COG2606 Uncharacterized conserved protein + Term 19276 - 19311 7.4 18 12 Tu 1 . - CDS 19307 - 20959 1789 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 21004 - 21063 2.6 19 13 Tu 1 . + CDS 21177 - 22397 1218 ## COG0477 Permeases of the major facilitator superfamily + Term 22404 - 22443 8.0 + Prom 22474 - 22533 5.2 20 14 Tu 1 . + CDS 22635 - 24311 501 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Term 24363 - 24428 3.1 - Term 24349 - 24414 3.1 21 15 Tu 1 . - CDS 24444 - 25748 1391 ## COG0524 Sugar kinases, ribokinase family - Prom 25841 - 25900 1.7 + Prom 25720 - 25779 2.7 22 16 Tu 1 . + CDS 25900 - 26859 692 ## COG0657 Esterase/lipase + Term 26894 - 26939 8.0 - Term 26795 - 26831 2.0 23 17 Tu 1 . - CDS 26856 - 27818 931 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Prom 27843 - 27902 3.9 - Term 27927 - 27958 2.5 24 18 Tu 1 . - CDS 28054 - 28698 937 ## COG0563 Adenylate kinase and related kinases - Prom 28739 - 28798 3.9 - Term 28834 - 28873 8.3 25 19 Tu 1 . - CDS 28879 - 30753 2714 ## COG0326 Molecular chaperone, HSP90 family - Prom 30775 - 30834 3.8 - Term 30816 - 30861 9.0 26 20 Op 1 23/0.000 - CDS 30863 - 31468 519 ## COG0353 Recombinational DNA repair protein (RecF pathway) 27 20 Op 2 30/0.000 - CDS 31468 - 31797 227 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 - Term 31820 - 31848 1.6 28 20 Op 3 8/0.056 - CDS 31850 - 33781 1987 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 33818 - 33877 2.5 - Term 33822 - 33858 2.2 29 21 Tu 1 . - CDS 33910 - 34461 830 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 30 22 Tu 1 . - CDS 34614 - 34991 351 ## COG2832 Uncharacterized protein conserved in bacteria - Prom 35019 - 35078 4.0 + Prom 34978 - 35037 6.3 31 23 Op 1 . + CDS 35061 - 35588 523 ## COG3923 Primosomal replication protein N'' 32 23 Op 2 . + CDS 35602 - 35763 201 ## B21_00422 hypothetical protein + Term 35945 - 35978 4.1 - Term 35805 - 35841 2.4 33 24 Tu 1 . - CDS 35975 - 39337 3734 ## COG3264 Small-conductance mechanosensitive channel - Prom 39383 - 39442 3.6 34 25 Tu 1 . + CDS 39343 - 39534 58 ## gi|300919868|ref|ZP_07136335.1| conserved domain protein + Term 39721 - 39755 0.6 - Term 39422 - 39451 1.4 35 26 Tu 1 . - CDS 39465 - 40112 476 ## COG1309 Transcriptional regulator - Prom 40173 - 40232 5.0 + Prom 40116 - 40175 3.6 36 27 Op 1 27/0.000 + CDS 40254 - 41447 1197 ## COG0845 Membrane-fusion protein 37 27 Op 2 . + CDS 41470 - 44619 3445 ## COG0841 Cation/multidrug efflux pump + Term 44639 - 44666 1.5 38 28 Op 1 . + CDS 45165 - 45539 253 ## ECDH10B_0417 hypothetical protein 39 28 Op 2 . + CDS 45565 - 45783 178 ## UTI89_C0487 hemolysin expression-modulating protein + Term 45877 - 45917 -0.5 + Prom 45785 - 45844 5.8 40 29 Tu 1 . + CDS 45955 - 46506 435 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Prom 46527 - 46586 3.3 41 30 Tu 1 . + CDS 46622 - 47092 443 ## G2583_0570 hypothetical protein + Prom 47162 - 47221 3.2 42 31 Tu 1 . + CDS 47250 - 48806 1231 ## COG4943 Predicted signal transduction protein containing sensor and EAL domains + Term 48813 - 48860 -0.9 43 32 Tu 1 . - CDS 48848 - 49201 485 ## COG5507 Uncharacterized conserved protein - 5S_RRNA 49312 - 49425 100.0 # ECU82664 [D:55896..56009] # 4.5S ribosomal RNA # Escherichia coli # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. 44 33 Tu 1 . + CDS 49580 - 49891 288 ## COG3695 Predicted methylated DNA-protein cysteine methyltransferase + Term 50004 - 50040 2.7 - Term 49880 - 49911 4.1 45 34 Tu 1 . - CDS 49922 - 50494 443 ## COG3126 Uncharacterized protein conserved in bacteria - Prom 50553 - 50612 2.6 + Prom 50613 - 50672 2.9 46 35 Tu 1 . + CDS 50712 - 51572 731 ## COG1946 Acyl-CoA thioesterase + Term 51578 - 51617 5.2 - Term 51568 - 51602 3.3 47 36 Op 1 24/0.000 - CDS 51621 - 52907 1537 ## COG0004 Ammonia permease 48 36 Op 2 4/0.500 - CDS 52937 - 53275 449 ## COG0347 Nitrogen regulatory protein PII - Prom 53373 - 53432 5.6 - Term 53384 - 53419 4.5 49 37 Op 1 35/0.000 - CDS 53456 - 55237 225 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 50 37 Op 2 3/0.611 - CDS 55230 - 57002 1658 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 51 37 Op 3 1/0.917 - CDS 57032 - 57490 387 ## COG1522 Transcriptional regulators - Prom 57521 - 57580 7.5 - Term 57598 - 57625 1.5 52 38 Tu 1 . - CDS 57643 - 58461 700 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 58492 - 58551 2.6 + Prom 58477 - 58536 3.0 53 39 Op 1 5/0.222 + CDS 58561 - 60261 995 ## COG4533 ABC-type uncharacterized transport system, periplasmic component + Term 60285 - 60313 -0.0 54 39 Op 2 . + CDS 60326 - 61021 694 ## COG0603 Predicted PP-loop superfamily ATPase 55 40 Op 1 5/0.222 - CDS 61073 - 61471 371 ## COG0824 Predicted thioesterase - Prom 61502 - 61561 2.7 56 40 Op 2 6/0.056 - CDS 61565 - 61936 561 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 61983 - 62042 2.3 - Term 62006 - 62043 7.1 57 41 Tu 1 . - CDS 62087 - 63958 2299 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 64080 - 64139 3.5 - Term 64083 - 64114 2.5 58 42 Op 1 16/0.000 - CDS 64150 - 64422 443 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 64478 - 64537 3.4 - Term 64557 - 64598 8.5 59 42 Op 2 18/0.000 - CDS 64631 - 66985 3077 ## COG0466 ATP-dependent Lon protease, bacterial type - Prom 67095 - 67154 4.5 - Term 67109 - 67139 2.7 60 42 Op 3 24/0.000 - CDS 67173 - 68447 238 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 61 42 Op 4 29/0.000 - CDS 68573 - 69196 643 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 69230 - 69289 5.2 - Term 69371 - 69408 6.0 62 42 Op 5 2/0.778 - CDS 69442 - 70740 1769 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 70879 - 70938 6.0 - Term 70993 - 71031 6.2 63 43 Tu 1 . - CDS 71084 - 71401 273 ## COG0271 Stress-induced morphogen (activity unknown) - Prom 71568 - 71627 5.4 + Prom 71605 - 71664 3.4 64 44 Op 1 1/0.917 + CDS 71706 - 72284 680 ## COG3056 Uncharacterized lipoprotein 65 44 Op 2 5/0.222 + CDS 72328 - 73803 1373 ## COG0477 Permeases of the major facilitator superfamily + Prom 73967 - 74026 9.7 66 45 Op 1 25/0.000 + CDS 74263 - 75210 868 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 67 45 Op 2 20/0.000 + CDS 75232 - 77223 2113 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 68 45 Op 3 16/0.000 + CDS 77213 - 77827 683 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 69 45 Op 4 7/0.056 + CDS 77827 - 78156 293 ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 70 45 Op 5 2/0.778 + CDS 78171 - 79058 878 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) + Term 79079 - 79105 -1.0 + Prom 79127 - 79186 3.2 71 46 Tu 1 . + CDS 79207 - 80571 1544 ## COG0477 Permeases of the major facilitator superfamily + Term 80694 - 80721 -0.8 - Term 80539 - 80591 5.4 72 47 Tu 1 . - CDS 80699 - 81190 707 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 81216 - 81275 2.8 + Prom 81176 - 81235 2.5 73 48 Op 1 4/0.500 + CDS 81358 - 82269 792 ## COG1893 Ketopantoate reductase 74 48 Op 2 . + CDS 82232 - 82822 801 ## COG0693 Putative intracellular protease/amidase - Term 82675 - 82713 3.1 75 49 Tu 1 . - CDS 82876 - 84324 1710 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase - Prom 84519 - 84578 3.5 + Prom 84268 - 84327 3.1 76 50 Op 1 22/0.000 + CDS 84530 - 84772 349 ## COG1722 Exonuclease VII small subunit 77 50 Op 2 13/0.028 + CDS 84772 - 85671 899 ## COG0142 Geranylgeranyl pyrophosphate synthase 78 50 Op 3 3/0.611 + CDS 85696 - 87558 2039 ## COG1154 Deoxyxylulose-5-phosphate synthase + Prom 87593 - 87652 3.8 79 51 Tu 1 . + CDS 87738 - 88712 969 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Term 88704 - 88757 3.4 80 52 Op 1 12/0.028 - CDS 88766 - 89284 612 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 81 52 Op 2 11/0.056 - CDS 89262 - 90239 1087 ## COG0611 Thiamine monophosphate kinase 82 52 Op 3 17/0.000 - CDS 90317 - 90736 535 ## COG0781 Transcription termination factor 83 52 Op 4 6/0.056 - CDS 90756 - 91226 617 ## COG0054 Riboflavin synthase beta-chain 84 52 Op 5 14/0.028 - CDS 91315 - 92418 939 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 85 52 Op 6 . - CDS 92422 - 92871 447 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 92898 - 92957 4.6 + Prom 92938 - 92997 3.1 86 53 Tu 1 . + CDS 93022 - 93561 398 ## ECs0465 hypothetical protein + Term 93567 - 93607 1.4 + Prom 93723 - 93782 7.7 87 54 Tu 1 . + CDS 93860 - 94744 1201 ## COG3248 Nucleoside-binding outer membrane protein + Term 94749 - 94792 7.4 - Term 94741 - 94774 4.1 88 55 Tu 1 . - CDS 94921 - 95268 471 ## c0520 hypothetical protein - Prom 95297 - 95356 4.5 - Term 95336 - 95377 8.1 89 56 Op 1 31/0.000 - CDS 95397 - 96368 1100 ## COG0341 Preprotein translocase subunit SecF 90 56 Op 2 25/0.000 - CDS 96379 - 98193 2041 ## COG0342 Preprotein translocase subunit SecD 91 56 Op 3 15/0.000 - CDS 98254 - 98586 517 ## COG1862 Preprotein translocase subunit YajC 92 56 Op 4 17/0.000 - CDS 98609 - 99736 1048 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 93 56 Op 5 . - CDS 99792 - 100862 1171 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - Prom 100888 - 100947 4.0 + Prom 100831 - 100890 1.9 94 57 Tu 1 . + CDS 100955 - 101536 478 ## COG3124 Uncharacterized protein conserved in bacteria - Term 101375 - 101417 -1.0 95 58 Tu 1 . - CDS 101541 - 103355 1669 ## COG0366 Glycosidases 96 59 Op 1 5/0.222 - CDS 103514 - 104887 1577 ## COG1113 Gamma-aminobutyrate permease and related permeases - Term 104906 - 104941 6.4 97 59 Op 2 4/0.500 - CDS 104963 - 106282 1499 ## COG1114 Branched-chain amino acid permeases - Prom 106431 - 106490 5.3 - Term 106629 - 106662 3.1 98 60 Op 1 40/0.000 - CDS 106689 - 107984 1104 ## COG0642 Signal transduction histidine kinase - Term 108001 - 108040 3.3 99 60 Op 2 . - CDS 108042 - 108731 657 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 108755 - 108814 5.2 + Prom 108731 - 108790 3.8 100 61 Op 1 28/0.000 + CDS 108921 - 110123 967 ## COG0420 DNA repair exonuclease 101 61 Op 2 2/0.778 + CDS 110120 - 113266 2982 ## COG0419 ATPase involved in DNA repair 102 61 Op 3 . + CDS 113308 - 114576 958 ## COG2814 Arabinose efflux permease + Term 114675 - 114724 2.2 - Term 114661 - 114710 6.0 103 62 Tu 1 . - CDS 114719 - 115627 292 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 115716 - 115775 4.3 + Prom 115662 - 115721 4.1 104 63 Tu 1 . + CDS 115752 - 116663 1187 ## COG2974 DNA recombination-dependent growth factor C 105 64 Tu 1 . - CDS 116821 - 117024 131 ## ECH74115_0466 hypothetical protein - Prom 117198 - 117257 7.2 - Term 117267 - 117303 3.0 106 65 Op 1 . - CDS 117310 - 117594 287 ## COG3123 Uncharacterized protein conserved in bacteria 107 65 Op 2 . - CDS 117666 - 118343 646 ## S0334 hypothetical protein - Prom 118502 - 118561 11.1 108 66 Op 1 . - CDS 118601 - 118792 229 ## LF82_2523 uncharacterized protein YaiA 109 66 Op 2 1/0.917 - CDS 118842 - 119366 339 ## COG0703 Shikimate kinase - Prom 119417 - 119476 5.2 - Term 119451 - 119488 -0.4 110 67 Tu 1 . - CDS 119549 - 120007 397 ## COG1671 Uncharacterized protein conserved in bacteria - Prom 120098 - 120157 3.5 + Prom 120026 - 120085 4.3 111 68 Tu 1 . + CDS 120127 - 120936 903 ## COG0345 Pyrroline-5-carboxylate reductase + Term 120945 - 120997 11.3 112 69 Tu 1 . - CDS 120953 - 122053 674 ## COG2199 FOG: GGDEF domain - Prom 122081 - 122140 3.2 113 70 Tu 1 . - CDS 122170 - 122490 239 ## APECO1_1624 hypothetical protein - Term 122561 - 122603 11.1 114 71 Op 1 . - CDS 122609 - 124024 1301 ## COG1785 Alkaline phosphatase - Prom 124064 - 124123 5.8 115 71 Op 2 . - CDS 124125 - 124385 266 ## SSON_0357 hypothetical protein - Prom 124569 - 124628 8.0 116 72 Tu 1 . + CDS 124848 - 125942 1103 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Term 125951 - 125988 5.1 117 73 Tu 1 . - CDS 125966 - 126178 358 ## UTI89_C0397 hypothetical protein - Prom 126258 - 126317 5.7 + Prom 126328 - 126387 3.8 118 74 Tu 1 . + CDS 126438 - 126746 318 ## APECO1_1629 hypothetical protein 119 75 Op 1 . - CDS 126805 - 127899 1048 ## JW0369 predicted DNA-binding transcriptional regulator 120 75 Op 2 . - CDS 127912 - 129132 1310 ## COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components 121 75 Op 3 . - CDS 129152 - 129346 103 ## ECIAI1_0372 hypothetical protein - Prom 129390 - 129449 3.1 + Prom 129349 - 129408 3.9 122 76 Tu 1 . + CDS 129484 - 130641 1058 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 130651 - 130699 10.6 123 77 Op 1 . - CDS 130642 - 131265 347 ## SSON_0350 putative DNA-binding transcriptional regulator - Prom 131289 - 131348 1.7 124 77 Op 2 . - CDS 131353 - 134259 2731 ## COG3468 Type V secretory pathway, adhesin AidA + Prom 134120 - 134179 2.8 125 78 Op 1 . + CDS 134217 - 134408 110 ## 126 78 Op 2 . + CDS 134458 - 134613 59 ## ECDH10B_0326 hypothetical protein + Prom 134697 - 134756 3.2 127 79 Tu 1 . + CDS 134783 - 135757 1129 ## COG0113 Delta-aminolevulinic acid dehydratase 128 80 Op 1 5/0.222 - CDS 135864 - 136715 845 ## COG2175 Probable taurine catabolism dioxygenase 129 80 Op 2 7/0.056 - CDS 136712 - 137539 1102 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 130 80 Op 3 6/0.056 - CDS 137536 - 138303 267 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 131 80 Op 4 . - CDS 138316 - 139278 1168 ## COG4521 ABC-type taurine transport system, periplasmic component - Prom 139358 - 139417 4.1 132 81 Tu 1 . + CDS 139232 - 139456 131 ## EcE24377A_0388 hypothetical protein + Prom 139622 - 139681 7.9 133 82 Op 1 1/0.917 + CDS 139894 - 140565 400 ## COG2120 Uncharacterized proteins, LmbE homologs 134 82 Op 2 . + CDS 140575 - 141771 708 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 135 82 Op 3 . + CDS 141620 - 142330 412 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 136 82 Op 4 . + CDS 142332 - 143105 858 ## JW0349 hypothetical protein + Term 143219 - 143277 8.1 + Prom 143212 - 143271 5.8 137 83 Op 1 2/0.778 + CDS 143293 - 143568 282 ## COG1937 Uncharacterized protein conserved in bacteria 138 83 Op 2 12/0.028 + CDS 143603 - 144712 1227 ## COG1062 Zn-dependent alcohol dehydrogenases, class III + Term 144728 - 144760 1.3 139 84 Tu 1 . + CDS 144806 - 145639 603 ## COG0627 Predicted esterase 140 85 Tu 1 . - CDS 145863 - 146402 652 ## COG3122 Uncharacterized protein conserved in bacteria - Prom 146430 - 146489 3.1 141 86 Tu 1 . - CDS 146504 - 147715 1063 ## COG0477 Permeases of the major facilitator superfamily - Prom 147767 - 147826 4.0 Predicted protein(s) >gi|223713555|gb|ACDM01000043.1| GENE 1 2 - 2612 1354 870 aa, chain - ## HITS:1 COG:rhsD KEGG:ns NR:ns ## COG: rhsD COG3209 # Protein_GI_number: 16128481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 870 1 870 1426 1666 100.0 0 MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPG ETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDIRLQLRDDGLILNDNGGRS IHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQ GPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGRTLTYRREAAGDLAGEITGVTDG AGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASAFPDTLPGTEYGPDRGIRLSAVWL MHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPE MRYRYDDTGRVVEQLNPAGLSYRYLYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELA DGSVTRSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTA VVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRY GQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLTSVKDAQGRETRYEY NAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVF SYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAE QWQYDGHGWLTDISHLSEGHRVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYN EQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNA AYELTSTYTPAGQLQSQHLNSLVYDRDYGW >gi|223713555|gb|ACDM01000043.1| GENE 2 3043 - 5457 2586 804 aa, chain - ## HITS:1 COG:ybbP KEGG:ns NR:ns ## COG: ybbP COG3127 # Protein_GI_number: 16128480 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component # Organism: Escherichia coli K12 # 1 804 1 804 804 1432 100.0 0 MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSS REVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLK PQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNLAD VDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSMERS QQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLMVLT LSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLL ATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGV LGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR WQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIVPESFYPVVRARLTAINDKPTEGNED EALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEF RAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISL LDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAG KKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALL LSLFGGWLGARLVKGKALFRQFAG >gi|223713555|gb|ACDM01000043.1| GENE 3 5454 - 6140 313 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 25 228 20 223 223 125 36 1e-27 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGKSTLLAILAGLD DGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS AESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ TGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLRLVNGQLQEEA >gi|223713555|gb|ACDM01000043.1| GENE 4 6078 - 6734 554 218 aa, chain + ## HITS:1 COG:tesA KEGG:ns NR:ns ## COG: tesA COG2755 # Protein_GI_number: 16128478 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Escherichia coli K12 # 11 218 1 208 208 404 100.0 1e-113 MLPLTDGLLKMMNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSASAAWP ALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQT EQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEV YLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS >gi|223713555|gb|ACDM01000043.1| GENE 5 6724 - 7533 229 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 14 268 3 249 259 92 32 8e-18 MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGF TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM RYPVTLVTWAVMVLKRLLPGRVMDKILQG >gi|223713555|gb|ACDM01000043.1| GENE 6 7594 - 8448 1340 284 aa, chain + ## HITS:1 COG:ybbN KEGG:ns NR:ns ## COG: ybbN COG3118 # Protein_GI_number: 16128476 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Escherichia coli K12 # 1 284 13 296 296 481 100.0 1e-136 MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAK LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQ AMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLKTIPLQDQD TRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF GHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY >gi|223713555|gb|ACDM01000043.1| GENE 7 8511 - 9290 834 259 aa, chain - ## HITS:1 COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 259 10 268 268 443 100.0 1e-124 MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSV DDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIP MQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRA ALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT YRKFYNSRHQLVVTQLKKK >gi|223713555|gb|ACDM01000043.1| GENE 8 9277 - 9954 173 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7 208 1 210 245 71 30 2e-11 MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT SGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDF LERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMI HRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA >gi|223713555|gb|ACDM01000043.1| GENE 9 10100 - 11017 1383 305 aa, chain + ## HITS:1 COG:ECs0552 KEGG:ns NR:ns ## COG: ECs0552 COG0330 # Protein_GI_number: 15829806 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 536 100.0 1e-152 MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN MMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVL GSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAER TKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSAN KRTQP >gi|223713555|gb|ACDM01000043.1| GENE 10 11014 - 11472 412 152 aa, chain + ## HITS:1 COG:ybbJ KEGG:ns NR:ns ## COG: ybbJ COG1585 # Protein_GI_number: 16128472 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Escherichia coli K12 # 2 152 1 151 151 241 100.0 3e-64 MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMF AILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSS WPVSASEDLGAGTHVEVIAIEGITLHIRAVSS >gi|223713555|gb|ACDM01000043.1| GENE 11 11473 - 11880 433 135 aa, chain - ## HITS:1 COG:ybbI KEGG:ns NR:ns ## COG: ybbI COG0789 # Protein_GI_number: 16128471 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 135 1 135 135 266 100.0 8e-72 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADC PIIENLSGCCHHRAG >gi|223713555|gb|ACDM01000043.1| GENE 12 12005 - 13294 1498 429 aa, chain - ## HITS:1 COG:ybaT KEGG:ns NR:ns ## COG: ybaT COG0531 # Protein_GI_number: 16128470 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 429 2 430 430 668 100.0 0 MNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSG YAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQFL HEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQP AHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLLY ISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAVF NIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYL AVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIVA MVMKRNKTV >gi|223713555|gb|ACDM01000043.1| GENE 13 13300 - 14232 925 310 aa, chain - ## HITS:1 COG:ybaS KEGG:ns NR:ns ## COG: ybaS COG2066 # Protein_GI_number: 16128469 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Escherichia coli K12 # 1 310 1 310 310 609 100.0 1e-174 MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDY RFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGA IATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGY LYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMM EGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVA KQLGYNVFKG >gi|223713555|gb|ACDM01000043.1| GENE 14 14494 - 16998 2802 834 aa, chain + ## HITS:1 COG:ybaR KEGG:ns NR:ns ## COG: ybaR COG2217 # Protein_GI_number: 16128468 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli K12 # 1 834 1 834 834 1477 100.0 0 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVTGTASAEQLIETIKQAG YDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNA LQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIEDDAKRRERQQETAVA TMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSLWLVIGLITLAVMVFAGGHFYRS AWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGH MLEARARQRSSKALEKLLDLTPPTARLVTDEGEKSVPLAEVQPGMLLRLTTGDRVPVDGE ITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVR QAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTVLIIACP CALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGKPQVVAVKT FADVDEAQALRLAAALEQGSSHPLARAILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHAL LLGNQALLNEQQVGTKAIEAEITAQASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQ RLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKHLQSEGRQVAMVGD GINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLHNMKQNLLG AFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE >gi|223713555|gb|ACDM01000043.1| GENE 15 17314 - 17655 345 113 aa, chain - ## HITS:1 COG:ECs0536 KEGG:ns NR:ns ## COG: ECs0536 COG3093 # Protein_GI_number: 15829790 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Escherichia coli O157:H7 # 1 113 19 131 131 202 100.0 2e-52 MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLA KVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYLARREERAKKVA >gi|223713555|gb|ACDM01000043.1| GENE 16 17793 - 18587 759 264 aa, chain + ## HITS:1 COG:ybaP KEGG:ns NR:ns ## COG: ybaP COG3735 # Protein_GI_number: 16128466 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 264 1 264 264 506 100.0 1e-143 MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMAPLPTRLLKKLKN ADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHISQEMGISPSLFSTQPLWQI AMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQIAMLLQLPDKGLALLD DTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP PGRYVVAVGALHLYGEGNLPQMLR >gi|223713555|gb|ACDM01000043.1| GENE 17 18791 - 19270 738 159 aa, chain + ## HITS:1 COG:ybaK KEGG:ns NR:ns ## COG: ybaK COG2606 # Protein_GI_number: 16128465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 159 1 159 159 292 100.0 2e-79 MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLA VAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPA QEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD >gi|223713555|gb|ACDM01000043.1| GENE 18 19307 - 20959 1789 550 aa, chain - ## HITS:1 COG:ushA KEGG:ns NR:ns ## COG: ushA COG0737 # Protein_GI_number: 16128464 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Escherichia coli K12 # 1 550 1 550 550 1117 100.0 0 MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQK TLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFD NPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGN PEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARAL PAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADF EFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQL EVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISY KNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKI KGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSV YEPKGEVSWQ >gi|223713555|gb|ACDM01000043.1| GENE 19 21177 - 22397 1218 406 aa, chain + ## HITS:1 COG:fsr KEGG:ns NR:ns ## COG: fsr COG0477 # Protein_GI_number: 16128463 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 406 1 406 406 676 100.0 0 MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFM QIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLALAGSFGAVLLAA ALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNV AWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIINPLPRNKVVLAVSILLILIFSKY FYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSI LGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAF GMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD >gi|223713555|gb|ACDM01000043.1| GENE 20 22635 - 24311 501 558 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 4 543 5 535 618 197 25 2e-49 MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPEL AELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVF GLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDV GFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGVAF GAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQ QPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNL LPQAGQNLVLAGAILSIMLNPVLFALLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHA LLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLE CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIA RTMLELLETPPAGEVVTG >gi|223713555|gb|ACDM01000043.1| GENE 21 24444 - 25748 1391 434 aa, chain - ## HITS:1 COG:ECs0530 KEGG:ns NR:ns ## COG: ECs0530 COG0524 # Protein_GI_number: 15829784 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 1 434 1 434 434 914 100.0 0 MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLVDIEAKVDDEFIERYGL SAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNI EIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESGERTFAISPGHMNQLRAESIP EDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKKYNVPVVLTLGTKFVIAENPQWW QQFLKDHVSILAMNEDEAEALTGESDPLLASDKALDWVDLVLCTAGPIGLYMAGFTEDEA KRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGA LAALLHDITANSYHRSNVPNSSKHKFTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGL PEREDSLEESYWDR >gi|223713555|gb|ACDM01000043.1| GENE 22 25900 - 26859 692 319 aa, chain + ## HITS:1 COG:aes KEGG:ns NR:ns ## COG: aes COG0657 # Protein_GI_number: 16128460 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Escherichia coli K12 # 1 319 1 319 319 664 100.0 0 MKPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMAT RAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIG IDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDSAGAMLALASALWLRD KQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYY CLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRM MKTADEALRDGAQFFTAQL >gi|223713555|gb|ACDM01000043.1| GENE 23 26856 - 27818 931 320 aa, chain - ## HITS:1 COG:hemH KEGG:ns NR:ns ## COG: hemH COG0276 # Protein_GI_number: 16128459 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Escherichia coli K12 # 1 320 1 320 320 625 100.0 1e-179 MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLLWWPLLRGVILPLRSPR VAKLYASVWMEGGSPLMVYSRQQQQALAQRLPEMPVALGMSYGSPSLESAVDELLAEHVD HIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIRDYADNHDYINALANSVRASF AKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTRELASALGMAPEKVMMTFQSRFGRE PWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLETLEEIAEQNREVFLGAGGKKYEYIP ALNATPEHIEMMANLVAAYR >gi|223713555|gb|ACDM01000043.1| GENE 24 28054 - 28698 937 214 aa, chain - ## HITS:1 COG:ECs0527 KEGG:ns NR:ns ## COG: ECs0527 COG0563 # Protein_GI_number: 15829781 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Escherichia coli O157:H7 # 1 214 1 214 214 404 100.0 1e-113 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG YYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG >gi|223713555|gb|ACDM01000043.1| GENE 25 28879 - 30753 2714 624 aa, chain - ## HITS:1 COG:ECs0526 KEGG:ns NR:ns ## COG: ECs0526 COG0326 # Protein_GI_number: 15829780 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Escherichia coli O157:H7 # 1 624 1 624 624 1183 100.0 0 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGD GELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLI GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHL REGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSE ITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLY VQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYV SRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPF QSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVS TDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQA LLAERGTLEDPNLFIRRMNQLLVS >gi|223713555|gb|ACDM01000043.1| GENE 26 30863 - 31468 519 201 aa, chain - ## HITS:1 COG:ECs0525 KEGG:ns NR:ns ## COG: ECs0525 COG0353 # Protein_GI_number: 15829779 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Escherichia coli O157:H7 # 1 201 1 201 201 399 100.0 1e-111 MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADC RTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGP DDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAELCAQYDVEASRIAHGVPVGGE LEMVDGTTLSHSLAGRHKIRF >gi|223713555|gb|ACDM01000043.1| GENE 27 31468 - 31797 227 109 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5 109 9 114 114 92 41 1e-17 MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPS LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF >gi|223713555|gb|ACDM01000043.1| GENE 28 31850 - 33781 1987 643 aa, chain - ## HITS:1 COG:dnaX KEGG:ns NR:ns ## COG: dnaX COG2812 # Protein_GI_number: 16128454 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Escherichia coli K12 # 1 643 1 643 643 1118 100.0 0 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI >gi|223713555|gb|ACDM01000043.1| GENE 29 33910 - 34461 830 183 aa, chain - ## HITS:1 COG:apt KEGG:ns NR:ns ## COG: apt COG0503 # Protein_GI_number: 16128453 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Escherichia coli K12 # 1 183 1 183 183 349 100.0 1e-96 MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKV VGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGD KVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPF PGH >gi|223713555|gb|ACDM01000043.1| GENE 30 34614 - 34991 351 125 aa, chain - ## HITS:1 COG:ECs0521 KEGG:ns NR:ns ## COG: ECs0521 COG2832 # Protein_GI_number: 15829775 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 125 1 125 125 199 100.0 1e-51 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE KQEKH >gi|223713555|gb|ACDM01000043.1| GENE 31 35061 - 35588 523 175 aa, chain + ## HITS:1 COG:priC KEGG:ns NR:ns ## COG: priC COG3923 # Protein_GI_number: 16128451 # Func_class: L Replication, recombination and repair # Function: Primosomal replication protein N'' # Organism: Escherichia coli K12 # 1 175 1 175 175 245 100.0 3e-65 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR >gi|223713555|gb|ACDM01000043.1| GENE 32 35602 - 35763 201 53 aa, chain + ## HITS:1 COG:no KEGG:B21_00422 NR:ns ## KEGG: B21_00422 # Name: ybaM # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 53 1 53 53 72 100.0 3e-12 MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKKLTRDDEAEK >gi|223713555|gb|ACDM01000043.1| GENE 33 35975 - 39337 3734 1120 aa, chain - ## HITS:1 COG:aefA KEGG:ns NR:ns ## COG: aefA COG3264 # Protein_GI_number: 16128449 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1 1120 1 1120 1120 2077 100.0 0 MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTKADLQAQLDSLNKQKDL SAQDKLVQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKMRQATAALTALSDVDNDEE TRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVSLQTQPERVQNAMYNASQQLQ QIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQRKSLEGNTVLQDTLQKQRDYVT ANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPDEAARIQANPLVKQELEINQQLSQR LITATENGNQLMQQNIKVKNWLERALQSERNIKEQIAVLKGSLLLSRILYQQQQTLPSAD ELENMTNRIADLRLEQFEVNQQRDALFQSDAFVNKLEEGHTNEVNSEVHDALLQVVDMRR ELLDQLNKQLGNQLMMAINLQINQQQLMSVSKNLKSILTQQIFWVNSNRPMDWDWIKAFP QSLKDEFKSMKITVNWQKAWPAVFIAFLAGLPLLLIAGLIHWRLGWLKAYQQKLASAVGS LRNDSQLNTPKAILIDLIRALPVCLIILAVGLILLTMQLNISELLWSFSKKLAIFWLVFG LCWKVLEKNGVAVRHFGMPEQQTSHWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLG QAMIFFNLLLIAFLVWPMCRESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLR LAGRWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPT IALEQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKN VTMGSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMT VFGSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGT VSKIRIRATTITDFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRK VLLKAATEHPRVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCR ENDINIAFNQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG >gi|223713555|gb|ACDM01000043.1| GENE 34 39343 - 39534 58 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300919868|ref|ZP_07136335.1| ## NR: gi|300919868|ref|ZP_07136335.1| conserved domain protein [Escherichia coli MS 115-1] # 1 61 1 61 71 103 98.0 4e-21 MKVSEPEERPEKVKPQEYHDAVNQNSNDENVQEKSWSQIQGYSLVAGLRSVGHRRYISSK MAT >gi|223713555|gb|ACDM01000043.1| GENE 35 39465 - 40112 476 215 aa, chain - ## HITS:1 COG:acrR KEGG:ns NR:ns ## COG: acrR COG1309 # Protein_GI_number: 16128448 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 215 1 215 215 418 100.0 1e-117 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE >gi|223713555|gb|ACDM01000043.1| GENE 36 40254 - 41447 1197 397 aa, chain + ## HITS:1 COG:ECs0516 KEGG:ns NR:ns ## COG: ECs0516 COG0845 # Protein_GI_number: 15829770 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1 397 1 397 397 660 100.0 0 MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV ISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS >gi|223713555|gb|ACDM01000043.1| GENE 37 41470 - 44619 3445 1049 aa, chain + ## HITS:1 COG:acrB KEGG:ns NR:ns ## COG: acrB COG0841 # Protein_GI_number: 16128446 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1049 1 1049 1049 2000 100.0 0 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF FVPVFFVVVRRRFSRKNEDIEHSHTVDHH >gi|223713555|gb|ACDM01000043.1| GENE 38 45165 - 45539 253 124 aa, chain + ## HITS:1 COG:no KEGG:ECDH10B_0417 NR:ns ## KEGG: ECDH10B_0417 # Name: ybaJ # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 124 1 124 124 239 99.0 3e-62 MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDSTSAINLQLNELIEHIATFAL NYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPA SLSC >gi|223713555|gb|ACDM01000043.1| GENE 39 45565 - 45783 178 72 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C0487 NR:ns ## KEGG: UTI89_C0487 # Name: hha # Def: hemolysin expression-modulating protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 72 5 76 76 130 100.0 1e-29 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY DKIPSSVWKFIR >gi|223713555|gb|ACDM01000043.1| GENE 40 45955 - 46506 435 183 aa, chain + ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1 183 1 183 183 381 100.0 1e-106 MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEA YIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVAR NSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARII KKL >gi|223713555|gb|ACDM01000043.1| GENE 41 46622 - 47092 443 156 aa, chain + ## HITS:1 COG:no KEGG:G2583_0570 NR:ns ## KEGG: G2583_0570 # Name: ylaC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 156 14 169 169 304 100.0 8e-82 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS >gi|223713555|gb|ACDM01000043.1| GENE 42 47250 - 48806 1231 518 aa, chain + ## HITS:1 COG:ylaB KEGG:ns NR:ns ## COG: ylaB COG4943 # Protein_GI_number: 16128441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Escherichia coli K12 # 1 518 1 518 518 1044 100.0 0 MLVRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQ GKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFP EPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIG NAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKG WHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGK IVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHI SINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHE IYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIE TSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL >gi|223713555|gb|ACDM01000043.1| GENE 43 48848 - 49201 485 117 aa, chain - ## HITS:1 COG:ECs0509 KEGG:ns NR:ns ## COG: ECs0509 COG5507 # Protein_GI_number: 15829763 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 117 1 117 117 213 100.0 9e-56 MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE >gi|223713555|gb|ACDM01000043.1| GENE 44 49580 - 49891 288 103 aa, chain + ## HITS:1 COG:ECs0508 KEGG:ns NR:ns ## COG: ECs0508 COG3695 # Protein_GI_number: 15829762 # Func_class: L Replication, recombination and repair # Function: Predicted methylated DNA-protein cysteine methyltransferase # Organism: Escherichia coli O157:H7 # 1 103 27 129 129 202 100.0 8e-53 MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRV VNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWNY >gi|223713555|gb|ACDM01000043.1| GENE 45 49922 - 50494 443 190 aa, chain - ## HITS:1 COG:ECs0507 KEGG:ns NR:ns ## COG: ECs0507 COG3126 # Protein_GI_number: 15829761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 190 1 190 190 233 99.0 2e-61 MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPAIQQPNVSGTVWIRQKV ALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFVLPFNPADVQPNARILLSA AITVNDKQVFITDTVQPVINQGGTKADLTLVPVQQTAVPVQASGGATTTVPSTSPTQVNP SSAVPAPTQY >gi|223713555|gb|ACDM01000043.1| GENE 46 50712 - 51572 731 286 aa, chain + ## HITS:1 COG:ECs0506 KEGG:ns NR:ns ## COG: ECs0506 COG1946 # Protein_GI_number: 15829760 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA thioesterase # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 557 100.0 1e-159 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN >gi|223713555|gb|ACDM01000043.1| GENE 47 51621 - 52907 1537 428 aa, chain - ## HITS:1 COG:ECs0505 KEGG:ns NR:ns ## COG: ECs0505 COG0004 # Protein_GI_number: 15829759 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Escherichia coli O157:H7 # 1 428 1 428 428 727 100.0 0 MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRG KNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNIELTAVMGSIYQY IHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGA LDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAG SAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGY IGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG GVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNS HGENAYNA >gi|223713555|gb|ACDM01000043.1| GENE 48 52937 - 53275 449 112 aa, chain - ## HITS:1 COG:ECs0504 KEGG:ns NR:ns ## COG: ECs0504 COG0347 # Protein_GI_number: 15829758 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 196 100.0 1e-50 MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVK IDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL >gi|223713555|gb|ACDM01000043.1| GENE 49 53456 - 55237 225 593 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 346 565 135 355 398 91 35 2e-17 MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPLLISYFIDNMVAKNNLP LKVVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSEFDTQP VGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAMFSLDWRMALVAIMIFPVVLV VMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQQFRQQARFGERMGEASRSHYMA RMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIE LTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGTIEVDNVSFAYRDDNLVLKNI NLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMV QQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVG QKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVD ADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAGEELAASVREEESLSA >gi|223713555|gb|ACDM01000043.1| GENE 50 55230 - 57002 1658 590 aa, chain - ## HITS:1 COG:mdlA KEGG:ns NR:ns ## COG: mdlA COG1132 # Protein_GI_number: 16128433 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Escherichia coli K12 # 1 590 1 590 590 1174 100.0 0 MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVDGVTEQHFTTGQILMWI ATMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSRQHPEFYLRHRTGDLMARA TNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQLTLFSLLPMPVMAIMIKRNGD ALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARI DARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQLTSFMMYLGLMIWPMLALAWMFNI VERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGELDVNIHQFTYPQTDHPALENVNFALK PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF LFSDTVANNIALGCPNATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR ISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRLSALTEASEI IVMQHGHIAQRGNHDVLAQQSGWYRDMYRYQQLEAALDDAPENREEAVDA >gi|223713555|gb|ACDM01000043.1| GENE 51 57032 - 57490 387 152 aa, chain - ## HITS:1 COG:ybaO KEGG:ns NR:ns ## COG: ybaO COG1522 # Protein_GI_number: 16128432 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 152 30 181 181 308 100.0 2e-84 MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKI GLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEF YKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE >gi|223713555|gb|ACDM01000043.1| GENE 52 57643 - 58461 700 272 aa, chain - ## HITS:1 COG:cof KEGG:ns NR:ns ## COG: cof COG0561 # Protein_GI_number: 16128431 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1 272 5 276 276 560 100.0 1e-159 MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHALEMQHILGALSLDA YLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASMHIFNDDGWFTGKEIPALL QAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQIQLYEALGERAHLCFSATDCL EVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDREMLVSVGSGFIMGNAMPQLRAEL PHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE >gi|223713555|gb|ACDM01000043.1| GENE 53 58561 - 60261 995 566 aa, chain + ## HITS:1 COG:ybaE KEGG:ns NR:ns ## COG: ybaE COG4533 # Protein_GI_number: 16128430 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli K12 # 1 566 1 566 566 1107 100.0 0 MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSG RGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDT PTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGL RWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHR PDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYW ITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARK VISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHT MAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDP LWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAP PGVNGVRLTPRGWFEFTEAWLPAPSQ >gi|223713555|gb|ACDM01000043.1| GENE 54 60326 - 61021 694 231 aa, chain + ## HITS:1 COG:ybaX KEGG:ns NR:ns ## COG: ybaX COG0603 # Protein_GI_number: 16128429 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Escherichia coli K12 # 1 231 1 231 231 485 100.0 1e-137 MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKV LDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNILFLTLAAIYAYQVKAEAVI TGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWALADYYGKLDL VRNETLTCYNGFKGDGCGHCAACNLRANGLNHYLADKPTVMAAMKQKTGLR >gi|223713555|gb|ACDM01000043.1| GENE 55 61073 - 61471 371 132 aa, chain - ## HITS:1 COG:ybaW KEGG:ns NR:ns ## COG: ybaW COG0824 # Protein_GI_number: 16128428 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Escherichia coli K12 # 1 132 1 132 132 251 100.0 3e-67 MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMTAHNIAFVVVNININY RRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALALE GELREKLEQMVK >gi|223713555|gb|ACDM01000043.1| GENE 56 61565 - 61936 561 123 aa, chain - ## HITS:1 COG:ybaV KEGG:ns NR:ns ## COG: ybaV COG1555 # Protein_GI_number: 16128427 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Escherichia coli K12 # 1 123 1 123 123 179 100.0 7e-46 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV LTL >gi|223713555|gb|ACDM01000043.1| GENE 57 62087 - 63958 2299 623 aa, chain - ## HITS:1 COG:ybaU KEGG:ns NR:ns ## COG: ybaU COG0760 # Protein_GI_number: 16128426 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli K12 # 1 623 1 623 623 1106 100.0 0 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFN SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA IFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGET DELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDA ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK EKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAK VKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA DVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPI SQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIV FEALMSNLRKEAKIKIGDALEQQ >gi|223713555|gb|ACDM01000043.1| GENE 58 64150 - 64422 443 90 aa, chain - ## HITS:1 COG:YPO3154 KEGG:ns NR:ns ## COG: YPO3154 COG0776 # Protein_GI_number: 16123316 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Yersinia pestis # 1 90 1 90 90 126 92.0 1e-29 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG RNPQTGKEITIAAAKVPSFRAGKALKDAVN >gi|223713555|gb|ACDM01000043.1| GENE 59 64631 - 66985 3077 784 aa, chain - ## HITS:1 COG:lon KEGG:ns NR:ns ## COG: lon COG0466 # Protein_GI_number: 16128424 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Escherichia coli K12 # 1 784 1 784 784 1482 100.0 0 MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEAST DEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESP TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADK QSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE LGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQ VPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV GKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLF LLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP LLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG VRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTG LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYE KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLK EKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQV VTAK >gi|223713555|gb|ACDM01000043.1| GENE 60 67173 - 68447 238 424 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 159 386 250 432 466 96 31 7e-19 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ ASGE >gi|223713555|gb|ACDM01000043.1| GENE 61 68573 - 69196 643 207 aa, chain - ## HITS:1 COG:ECs0491 KEGG:ns NR:ns ## COG: ECs0491 COG0740 # Protein_GI_number: 15829745 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Escherichia coli O157:H7 # 1 207 1 207 207 417 100.0 1e-117 MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQ MLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER DTERDRFLSAPEAVEYGLVDSILTHRN >gi|223713555|gb|ACDM01000043.1| GENE 62 69442 - 70740 1769 432 aa, chain - ## HITS:1 COG:ECs0490 KEGG:ns NR:ns ## COG: ECs0490 COG0544 # Protein_GI_number: 15829744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 738 100.0 0 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGL EAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGG KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKV EERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDI DVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNEL KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEK ETTFNELMNQQA >gi|223713555|gb|ACDM01000043.1| GENE 63 71084 - 71401 273 105 aa, chain - ## HITS:1 COG:ECs0489 KEGG:ns NR:ns ## COG: ECs0489 COG0271 # Protein_GI_number: 15829743 # Func_class: T Signal transduction mechanisms # Function: Stress-induced morphogen (activity unknown) # Organism: Escherichia coli O157:H7 # 1 105 12 116 116 204 100.0 3e-53 MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMI YSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAGSIA >gi|223713555|gb|ACDM01000043.1| GENE 64 71706 - 72284 680 192 aa, chain + ## HITS:1 COG:yajG KEGG:ns NR:ns ## COG: yajG COG3056 # Protein_GI_number: 16128419 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1 192 35 226 226 355 100.0 2e-98 MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAK VTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVR YNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQD TSIHEFIKQNAR >gi|223713555|gb|ACDM01000043.1| GENE 65 72328 - 73803 1373 491 aa, chain + ## HITS:1 COG:ECs0487 KEGG:ns NR:ns ## COG: ECs0487 COG0477 # Protein_GI_number: 15829741 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 491 1 491 491 843 100.0 0 MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYV FKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFC SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLM AALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF AMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGILQG ASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLSAL SAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAAVPGLILLLVCRQTLEYTRVNDNFISRTA YPAGYAFAMWTLAAGVSLLAVWLLLLTMDALDLTHFSFLPALLEVGVLVALSGVVLGGLL DYLALRKTHLT >gi|223713555|gb|ACDM01000043.1| GENE 66 74263 - 75210 868 315 aa, chain + ## HITS:1 COG:cyoA KEGG:ns NR:ns ## COG: cyoA COG1622 # Protein_GI_number: 16128417 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Escherichia coli K12 # 1 315 1 315 315 629 100.0 1e-180 MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAIL MAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLG SQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQ SPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAH EGMEGMDMSHAESAH >gi|223713555|gb|ACDM01000043.1| GENE 67 75232 - 77223 2113 663 aa, chain + ## HITS:1 COG:ECs0485 KEGG:ns NR:ns ## COG: ECs0485 COG0843 # Protein_GI_number: 15829739 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Escherichia coli O157:H7 # 1 663 1 663 663 1241 100.0 0 MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIM YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIE YSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLII ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSE IAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTG VKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF HNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMT RRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLE WATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFST IFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLK NGN >gi|223713555|gb|ACDM01000043.1| GENE 68 77213 - 77827 683 204 aa, chain + ## HITS:1 COG:cyoC KEGG:ns NR:ns ## COG: cyoC COG1845 # Protein_GI_number: 16128415 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Escherichia coli K12 # 1 204 1 204 204 368 100.0 1e-102 MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTG KDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEF HHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCL SLFWHFLDVVWICVFTVVYLMGAM >gi|223713555|gb|ACDM01000043.1| GENE 69 77827 - 78156 293 109 aa, chain + ## HITS:1 COG:ECs0483 KEGG:ns NR:ns ## COG: ECs0483 COG3125 # Protein_GI_number: 15829737 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Escherichia coli O157:H7 # 1 109 1 109 109 159 100.0 8e-40 MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLV HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH >gi|223713555|gb|ACDM01000043.1| GENE 70 78171 - 79058 878 295 aa, chain + ## HITS:1 COG:ECs0482 KEGG:ns NR:ns ## COG: ECs0482 COG0109 # Protein_GI_number: 15829736 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Escherichia coli O157:H7 # 1 295 2 296 296 524 100.0 1e-148 MFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYID RDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYV GVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDSGAAILLAIFSLWQMPHSYAIA IFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLSLGGYAGYKYLVVAAAVS VWWLGMALRGYKVADDRIWARKLFGFSIIAITALSVMMSVDFMVPDSHTLLAAVW >gi|223713555|gb|ACDM01000043.1| GENE 71 79207 - 80571 1544 454 aa, chain + ## HITS:1 COG:yajR KEGG:ns NR:ns ## COG: yajR COG0477 # Protein_GI_number: 16128412 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 454 3 456 456 817 100.0 0 MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEALIGIAIGIYGLT QAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIWGIILGRALQGSGAIAAAV MALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIA LTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVALPGQLA DAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQT QFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGW INGMFDGQGVFLAGAMLAAVWLTVASTMKEPPYVSSLRIEIPANIAANEALKVRLLETEG IKEVLIAEEEHSAYVKIDSKVTNRFEIEQAIRQA >gi|223713555|gb|ACDM01000043.1| GENE 72 80699 - 81190 707 163 aa, chain - ## HITS:1 COG:ECs0480 KEGG:ns NR:ns ## COG: ECs0480 COG1666 # Protein_GI_number: 15829734 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 163 7 169 169 280 100.0 7e-76 MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDASKTIKVLSESDFQVNQ LLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGIESATQKKIVKMIKDSKLK VQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKNFRD >gi|223713555|gb|ACDM01000043.1| GENE 73 81358 - 82269 792 303 aa, chain + ## HITS:1 COG:apbA KEGG:ns NR:ns ## COG: apbA COG1893 # Protein_GI_number: 16128410 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Escherichia coli K12 # 1 303 1 303 303 623 100.0 1e-178 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF LATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTH AARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVN CVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAE NISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYERIGTGLP RPW >gi|223713555|gb|ACDM01000043.1| GENE 74 82232 - 82822 801 196 aa, chain + ## HITS:1 COG:thiJ KEGG:ns NR:ns ## COG: thiJ COG0693 # Protein_GI_number: 16128409 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli K12 # 1 196 3 198 198 381 100.0 1e-106 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLV EVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFP IGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHE VASQLVMAAGIYNYYE >gi|223713555|gb|ACDM01000043.1| GENE 75 82876 - 84324 1710 482 aa, chain - ## HITS:1 COG:ECs0477_1 KEGG:ns NR:ns ## COG: ECs0477_1 COG0301 # Protein_GI_number: 15829731 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 402 1 402 402 793 99.0 0 MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQR LAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFS SIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDV LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFV AINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN LRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKI EAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQE DKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVY RP >gi|223713555|gb|ACDM01000043.1| GENE 76 84530 - 84772 349 80 aa, chain + ## HITS:1 COG:ECs0476 KEGG:ns NR:ns ## COG: ECs0476 COG1722 # Protein_GI_number: 15829730 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Escherichia coli O157:H7 # 1 80 1 80 80 112 100.0 1e-25 MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQLARQGQAKLQQAEQRV QILLSDNEDASLTPFTPDNE >gi|223713555|gb|ACDM01000043.1| GENE 77 84772 - 85671 899 299 aa, chain + ## HITS:1 COG:ispA KEGG:ns NR:ns ## COG: ispA COG0142 # Protein_GI_number: 16128406 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Escherichia coli K12 # 1 299 1 299 299 535 100.0 1e-152 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFG VSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRH KTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK >gi|223713555|gb|ACDM01000043.1| GENE 78 85696 - 87558 2039 620 aa, chain + ## HITS:1 COG:dxs KEGG:ns NR:ns ## COG: dxs COG1154 # Protein_GI_number: 16128405 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Escherichia coli K12 # 1 620 1 620 620 1269 100.0 0 MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELT VALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSV GHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILND NEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPG TLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKKGRGYEPAEKDPITFHA VPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFP DRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDR AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGN AVGVELTPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVAESLNATLVDMRFVKPLDE ALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEM RAELGLDAAGMEAKIKAWLA >gi|223713555|gb|ACDM01000043.1| GENE 79 87738 - 88712 969 324 aa, chain + ## HITS:1 COG:yajO KEGG:ns NR:ns ## COG: yajO COG0667 # Protein_GI_number: 16128404 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 324 25 348 348 659 100.0 0 MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANS YSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDY VDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFV SMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGRLTRPWGETTARLVSDEVGKNLY KESDENDAQIAERLTGVSEELGATRAQVALAWLLSKPGIAAPIIGTSREEQLDELLNAVD ITLKPEQIAELETPYKPHPVVGFK >gi|223713555|gb|ACDM01000043.1| GENE 80 88766 - 89284 612 172 aa, chain - ## HITS:1 COG:pgpA KEGG:ns NR:ns ## COG: pgpA COG1267 # Protein_GI_number: 16128403 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Escherichia coli K12 # 1 172 1 172 172 313 100.0 8e-86 MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLY SLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIF RILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS >gi|223713555|gb|ACDM01000043.1| GENE 81 89262 - 90239 1087 325 aa, chain - ## HITS:1 COG:thiL KEGG:ns NR:ns ## COG: thiL COG0611 # Protein_GI_number: 16128402 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Escherichia coli K12 # 1 325 1 325 325 641 100.0 0 MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDID PADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLESFSDSLFDLLNYYDMQLIG GDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGTPGDSAAGLAILQNRLQVADA KDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLISDLGHIVKASDCGARIDLALLP FSDALSRHVEPEQALRWALSGGEDYELCFTVPELNRGALDVALGHLGVPFTCIGQMTADI EGLCFIRDGEPVTLDWKGYDHFATP >gi|223713555|gb|ACDM01000043.1| GENE 82 90317 - 90736 535 139 aa, chain - ## HITS:1 COG:ECs0469 KEGG:ns NR:ns ## COG: ECs0469 COG0781 # Protein_GI_number: 15829723 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Escherichia coli O157:H7 # 1 139 1 139 139 245 100.0 2e-65 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH KFVNGVLDKAAPVIRPNKK >gi|223713555|gb|ACDM01000043.1| GENE 83 90756 - 91226 617 156 aa, chain - ## HITS:1 COG:ECs0468 KEGG:ns NR:ns ## COG: ECs0468 COG0054 # Protein_GI_number: 15829722 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 258 100.0 4e-69 MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYEL PLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSEIPVAFGVLTTE SIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA >gi|223713555|gb|ACDM01000043.1| GENE 84 91315 - 92418 939 367 aa, chain - ## HITS:1 COG:ribD_2 KEGG:ns NR:ns ## COG: ribD_2 COG1985 # Protein_GI_number: 16128399 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Escherichia coli K12 # 144 367 1 224 224 443 100.0 1e-124 MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGI DVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDV QLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTP VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV CLHLVGA >gi|223713555|gb|ACDM01000043.1| GENE 85 92422 - 92871 447 149 aa, chain - ## HITS:1 COG:ECs0466 KEGG:ns NR:ns ## COG: ECs0466 COG1327 # Protein_GI_number: 15829720 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Escherichia coli O157:H7 # 1 149 1 149 149 272 100.0 1e-73 MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD KVAYIRFASVYRSFEDIKEFGEEIARLED >gi|223713555|gb|ACDM01000043.1| GENE 86 93022 - 93561 398 179 aa, chain + ## HITS:1 COG:no KEGG:ECs0465 NR:ns ## KEGG: ECs0465 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157J # Pathway: not_defined # 1 179 1 179 179 309 98.0 4e-83 MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKS SSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEY GQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ >gi|223713555|gb|ACDM01000043.1| GENE 87 93860 - 94744 1201 294 aa, chain + ## HITS:1 COG:Ztsx KEGG:ns NR:ns ## COG: Ztsx COG3248 # Protein_GI_number: 15800140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Nucleoside-binding outer membrane protein # Organism: Escherichia coli O157:H7 EDL933 # 1 294 1 294 294 523 99.0 1e-148 MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE YEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGP FKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANEN EWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSH ILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNF >gi|223713555|gb|ACDM01000043.1| GENE 88 94921 - 95268 471 115 aa, chain - ## HITS:1 COG:no KEGG:c0520 NR:ns ## KEGG: c0520 # Name: yajD # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 115 24 138 138 236 100.0 2e-61 MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSN WELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK >gi|223713555|gb|ACDM01000043.1| GENE 89 95397 - 96368 1100 323 aa, chain - ## HITS:1 COG:ECs0460 KEGG:ns NR:ns ## COG: ECs0460 COG0341 # Protein_GI_number: 15829714 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Escherichia coli O157:H7 # 1 323 1 323 323 613 100.0 1e-175 MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEI TLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINE STNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHD VIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS LTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLG MKREHMLQQKVEKEGADQPSILP >gi|223713555|gb|ACDM01000043.1| GENE 90 96379 - 98193 2041 604 aa, chain - ## HITS:1 COG:ECs0459 KEGG:ns NR:ns ## COG: ECs0459 COG0342 # Protein_GI_number: 15829713 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Escherichia coli O157:H7 # 1 604 12 615 615 1113 100.0 0 MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEE GAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGV HFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIA YLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQ PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE YKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA PIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIV GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFS SIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVK KLSI >gi|223713555|gb|ACDM01000043.1| GENE 91 98254 - 98586 517 110 aa, chain - ## HITS:1 COG:ECs0458 KEGG:ns NR:ns ## COG: ECs0458 COG1862 # Protein_GI_number: 15829712 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Escherichia coli O157:H7 # 1 110 1 110 110 201 100.0 4e-52 MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGD EVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL >gi|223713555|gb|ACDM01000043.1| GENE 92 98609 - 99736 1048 375 aa, chain - ## HITS:1 COG:ECs0457 KEGG:ns NR:ns ## COG: ECs0457 COG0343 # Protein_GI_number: 15829711 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Escherichia coli O157:H7 # 1 375 1 375 375 798 100.0 0 MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH LWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPI FLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRERFDSLGNKN ALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKADMHRILEHVCPQIPADKP RYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKYKSDTGPLDP ECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTD FYQRQGREVPPLNVD >gi|223713555|gb|ACDM01000043.1| GENE 93 99792 - 100862 1171 356 aa, chain - ## HITS:1 COG:ECs0456 KEGG:ns NR:ns ## COG: ECs0456 COG0809 # Protein_GI_number: 15829710 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Escherichia coli O157:H7 # 1 356 1 356 356 706 100.0 0 MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNN TRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMT ARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPT AGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAV LAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNF HLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE >gi|223713555|gb|ACDM01000043.1| GENE 94 100955 - 101536 478 193 aa, chain + ## HITS:1 COG:yajB KEGG:ns NR:ns ## COG: yajB COG3124 # Protein_GI_number: 16128389 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 193 1 193 193 352 100.0 2e-97 MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE AREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRF INLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQF YPRMMAQASRKAL >gi|223713555|gb|ACDM01000043.1| GENE 95 101541 - 103355 1669 604 aa, chain - ## HITS:1 COG:malZ KEGG:ns NR:ns ## COG: malZ COG0366 # Protein_GI_number: 16128388 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1 604 2 605 605 1249 99.0 0 MLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPG VTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWA ADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLD GISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLG MRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPK LDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEA AKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFLLWGFLANTDISYDPQQIDAQT CMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIY YGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDN VVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISAT VWMN >gi|223713555|gb|ACDM01000043.1| GENE 96 103514 - 104887 1577 457 aa, chain - ## HITS:1 COG:ECs0452 KEGG:ns NR:ns ## COG: ECs0452 COG1113 # Protein_GI_number: 15829706 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1 457 1 457 457 783 100.0 0 MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMR ALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQ PTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVP MRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINS DVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVI ASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIG YHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ >gi|223713555|gb|ACDM01000043.1| GENE 97 104963 - 106282 1499 439 aa, chain - ## HITS:1 COG:ECs0451 KEGG:ns NR:ns ## COG: ECs0451 COG1114 # Protein_GI_number: 15829705 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Escherichia coli O157:H7 # 1 439 1 439 439 741 100.0 0 MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV VALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSAL PLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEA YQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLT LLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTC ACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFT RSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMV VLAIIWDRAAGRQVTSSAH >gi|223713555|gb|ACDM01000043.1| GENE 98 106689 - 107984 1104 431 aa, chain - ## HITS:1 COG:phoR KEGG:ns NR:ns ## COG: phoR COG0642 # Protein_GI_number: 16128385 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 431 1 431 431 840 100.0 0 MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVD RSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGI FWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVM PYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVRE KALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQT FTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPG IAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFV IPERLIAKNSD >gi|223713555|gb|ACDM01000043.1| GENE 99 108042 - 108731 657 229 aa, chain - ## HITS:1 COG:ECs0449 KEGG:ns NR:ns ## COG: ECs0449 COG0745 # Protein_GI_number: 15829703 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 449 100.0 1e-126 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF >gi|223713555|gb|ACDM01000043.1| GENE 100 108921 - 110123 967 400 aa, chain + ## HITS:1 COG:ECs0448 KEGG:ns NR:ns ## COG: ECs0448 COG0420 # Protein_GI_number: 15829702 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 803 100.0 0 MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR TLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDG TPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPII ATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGS PIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVS QEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSEL SVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA >gi|223713555|gb|ACDM01000043.1| GENE 101 110120 - 113266 2982 1048 aa, chain + ## HITS:1 COG:sbcC KEGG:ns NR:ns ## COG: sbcC COG0419 # Protein_GI_number: 16128382 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Escherichia coli K12 # 1 1048 1 1048 1048 1499 100.0 0 MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE IYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQ QEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA EHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQ WNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAE QRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADV KTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVK KLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQP WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQE DEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWR QVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLT QLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLR ENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQ GLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVS LALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM KERIPVQIKVKKINGLGYSKLESTFAVK >gi|223713555|gb|ACDM01000043.1| GENE 102 113308 - 114576 958 422 aa, chain + ## HITS:1 COG:araJ KEGG:ns NR:ns ## COG: araJ COG2814 # Protein_GI_number: 16128381 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 29 422 1 394 394 632 100.0 0 MALLVVILQAITLLATVIGSRSGGCDGGMKKVILSLALGTFGLGMAEFGIMGVLTELAHN VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYL MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ EFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGN AGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTD FIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIA FNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP LG >gi|223713555|gb|ACDM01000043.1| GENE 103 114719 - 115627 292 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 3 298 6 316 319 117 31 4e-25 MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTV GMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAA GAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGK QGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVV NILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWP QE >gi|223713555|gb|ACDM01000043.1| GENE 104 115752 - 116663 1187 303 aa, chain + ## HITS:1 COG:rdgC KEGG:ns NR:ns ## COG: rdgC COG2974 # Protein_GI_number: 16128378 # Func_class: L Replication, recombination and repair # Function: DNA recombination-dependent growth factor C # Organism: Escherichia coli K12 # 1 303 1 303 303 572 100.0 1e-163 MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVA NGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAF SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWV RSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRI QFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE AQR >gi|223713555|gb|ACDM01000043.1| GENE 105 116821 - 117024 131 67 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_0466 NR:ns ## KEGG: ECH74115_0466 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 67 655 721 721 114 89.0 1e-24 MTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEAR HRLEEKQ >gi|223713555|gb|ACDM01000043.1| GENE 106 117310 - 117594 287 94 aa, chain - ## HITS:1 COG:ECs0441 KEGG:ns NR:ns ## COG: ECs0441 COG3123 # Protein_GI_number: 15829695 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 94 1 94 94 175 100.0 2e-44 MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDAT DWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL >gi|223713555|gb|ACDM01000043.1| GENE 107 117666 - 118343 646 225 aa, chain - ## HITS:1 COG:no KEGG:S0334 NR:ns ## KEGG: S0334 # Name: aroM # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 225 1 225 225 401 100.0 1e-111 MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILT LLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILP PLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLA KGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV >gi|223713555|gb|ACDM01000043.1| GENE 108 118601 - 118792 229 63 aa, chain - ## HITS:1 COG:no KEGG:LF82_2523 NR:ns ## KEGG: LF82_2523 # Name: yaiA # Def: uncharacterized protein YaiA # Organism: E.coli_LF82 # Pathway: not_defined # 1 63 1 63 63 90 100.0 2e-17 MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDP DKE >gi|223713555|gb|ACDM01000043.1| GENE 109 118842 - 119366 339 174 aa, chain - ## HITS:1 COG:ECs0438 KEGG:ns NR:ns ## COG: ECs0438 COG0703 # Protein_GI_number: 15829692 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Escherichia coli O157:H7 # 1 174 1 174 174 333 99.0 1e-91 MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRAR ETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVFYLCAPVSVLVNRLQAAPEEDLR PTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC >gi|223713555|gb|ACDM01000043.1| GENE 110 119549 - 120007 397 152 aa, chain - ## HITS:1 COG:ECs0436 KEGG:ns NR:ns ## COG: ECs0436 COG1671 # Protein_GI_number: 15829691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 152 41 192 192 291 100.0 2e-79 MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNE IVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGI QTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG >gi|223713555|gb|ACDM01000043.1| GENE 111 120127 - 120936 903 269 aa, chain + ## HITS:1 COG:proC KEGG:ns NR:ns ## COG: proC COG0345 # Protein_GI_number: 16128371 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Escherichia coli K12 # 1 269 1 269 269 489 100.0 1e-138 MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEV AQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMP NTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVF MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAV RVLEEKGFRAAVIEAMTKCMEKSEKLSKS >gi|223713555|gb|ACDM01000043.1| GENE 112 120953 - 122053 674 366 aa, chain - ## HITS:1 COG:yaiC_2 KEGG:ns NR:ns ## COG: yaiC_2 COG2199 # Protein_GI_number: 16128370 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 196 366 1 171 171 356 100.0 3e-98 MNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPP PGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTA MLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYP LLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLL IIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESA ITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRN RTEVAA >gi|223713555|gb|ACDM01000043.1| GENE 113 122170 - 122490 239 106 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1624 NR:ns ## KEGG: APECO1_1624 # Name: psiF # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 106 7 112 112 161 100.0 5e-39 MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKKAA >gi|223713555|gb|ACDM01000043.1| GENE 114 122609 - 124024 1301 471 aa, chain - ## HITS:1 COG:phoA KEGG:ns NR:ns ## COG: phoA COG1785 # Protein_GI_number: 16128368 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Escherichia coli K12 # 1 471 24 494 494 865 99.0 0 MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLS DKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDY VTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAA LVAHVASRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAG EWQGKTLREQAQALGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGN IDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQ IGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVM VMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK >gi|223713555|gb|ACDM01000043.1| GENE 115 124125 - 124385 266 86 aa, chain - ## HITS:1 COG:no KEGG:SSON_0357 NR:ns ## KEGG: SSON_0357 # Name: yaiB # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 86 1 86 86 132 100.0 5e-30 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK PDASIPDDDTELLRDYVKKLLKHPRQ >gi|223713555|gb|ACDM01000043.1| GENE 116 124848 - 125942 1103 364 aa, chain + ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 1 364 1 364 364 728 100.0 0 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL KTTM >gi|223713555|gb|ACDM01000043.1| GENE 117 125966 - 126178 358 70 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C0397 NR:ns ## KEGG: UTI89_C0397 # Name: yaiZ # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 70 45 114 114 138 100.0 5e-32 MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIR RRDEETENAQ >gi|223713555|gb|ACDM01000043.1| GENE 118 126438 - 126746 318 102 aa, chain + ## HITS:1 COG:no KEGG:APECO1_1629 NR:ns ## KEGG: APECO1_1629 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 102 1 102 102 200 100.0 1e-50 MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQE TGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ >gi|223713555|gb|ACDM01000043.1| GENE 119 126805 - 127899 1048 364 aa, chain - ## HITS:1 COG:no KEGG:JW0369 NR:ns ## KEGG: JW0369 # Name: yaiW # Def: predicted DNA-binding transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1 364 1 364 364 687 100.0 0 MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDL ATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLV HTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVS IAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYA SRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKG DSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRAR CMKQ >gi|223713555|gb|ACDM01000043.1| GENE 120 127912 - 129132 1310 406 aa, chain - ## HITS:1 COG:ECs0427 KEGG:ns NR:ns ## COG: ECs0427 COG1133 # Protein_GI_number: 15829681 # Func_class: I Lipid transport and metabolism # Function: ABC-type long-chain fatty acid transport system, fused permease and ATPase components # Organism: Escherichia coli O157:H7 # 1 406 1 406 406 757 100.0 0 MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIF YAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQ TALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQ LRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIP YGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRE LFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG QVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS >gi|223713555|gb|ACDM01000043.1| GENE 121 129152 - 129346 103 64 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_0372 NR:ns ## KEGG: ECIAI1_0372 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 64 1 64 64 119 100.0 3e-26 MPAFVILRVLIRLCKQSLVCEIRRNNSYGQAGELSALLWVTMGGFIWLTLCSGHAVNTQQ LLKR >gi|223713555|gb|ACDM01000043.1| GENE 122 129484 - 130641 1058 385 aa, chain + ## HITS:1 COG:ECs0426 KEGG:ns NR:ns ## COG: ECs0426 COG1680 # Protein_GI_number: 15829680 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli O157:H7 # 1 385 1 385 385 760 100.0 0 MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQ RVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA RVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQ AAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGAS PCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMD VPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRF KNMSDGINDLVTELSGNKPLVIPAS >gi|223713555|gb|ACDM01000043.1| GENE 123 130642 - 131265 347 207 aa, chain - ## HITS:1 COG:no KEGG:SSON_0350 NR:ns ## KEGG: SSON_0350 # Name: yaiV # Def: putative DNA-binding transcriptional regulator # Organism: S.sonnei # Pathway: not_defined # 1 207 16 222 222 418 100.0 1e-116 MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENV LIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLA WQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEV LAALRKGGYIEMNKGKLVAINRLPSEY >gi|223713555|gb|ACDM01000043.1| GENE 124 131353 - 134259 2731 968 aa, chain - ## HITS:1 COG:yaiU KEGG:ns NR:ns ## COG: yaiU COG3468 # Protein_GI_number: 16128359 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 502 968 1 467 467 731 99.0 0 MHSWKKKLVVSQLALACTLAITSQANAANYDTWTYIDNPVTALDWDHMDKAGTVDGNYVN YSGFVYYNNTNGDFDQSFNGDTVNGTISTYYLNHDYADSTANQLDISNSVIHGSITSMLP GGYYDRFDADGNNLGGYDFYTDAVVDTHWRDGDVFTLNIANTTIDDDYEALYFTDSYKDG DVTKHTNETFDTSEGVAVNLDVESNINISNNSRVAGIALSQGNTYNETYTTESHTWDNNI SVKDSTVTSGSNYILDSNTYGKTGHFGNSDEPSDYAGPGDVAMSFTASGSDYAMKNNVFL SNSTLMGDVAFTSTWNSNFDPNGHDSNGDGVKDTNGGWTDDSLNVDELNLTLDNGSKWVG QAIYNVAETSAMYDVATNSLTPDATYENNDWKRVVDDKVFQSGVFNVALNNGSEWDTTGR SIVDTLTVNNGSQVNVSESKLTSDTIDLTNGSSLNIGEDGYVDTDHLTINSYSTVALTES TGWGADYNLYANTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHNGNVVSGVFDI HSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNGTELDNSSVDNVV AATGNYKVRIDNATGAGAIADYKDKEIIYVNDVNSNATFSAANKADLGAYTYQAEQRGNT VVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFN GDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIY SSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGY VTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLA YVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSA NVGVKYTW >gi|223713555|gb|ACDM01000043.1| GENE 125 134217 - 134408 110 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIVILQVSFSRSAFVIPPQGRNKLIHQLSMHRKHIMFRANDYAALQTNGSIILSPKSEC GHI >gi|223713555|gb|ACDM01000043.1| GENE 126 134458 - 134613 59 51 aa, chain + ## HITS:1 COG:no KEGG:ECDH10B_0326 NR:ns ## KEGG: ECDH10B_0326 # Name: ykiB # Def: hypothetical protein # Organism: E.coli_DH10B # Pathway: not_defined # 1 51 39 89 89 77 100.0 1e-13 MLQIILFLKHTHNKYHKHKPDKYPMNMQQSFNYSIYSSATKLQKIITNSYK >gi|223713555|gb|ACDM01000043.1| GENE 127 134783 - 135757 1129 324 aa, chain + ## HITS:1 COG:ECs0423 KEGG:ns NR:ns ## COG: ECs0423 COG0113 # Protein_GI_number: 15829677 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Escherichia coli O157:H7 # 1 324 12 335 335 620 100.0 1e-178 MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH LAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTC FCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALD AAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQG ADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGS IKRAGADLIFSYFALDLAEKKILR >gi|223713555|gb|ACDM01000043.1| GENE 128 135864 - 136715 845 283 aa, chain - ## HITS:1 COG:tauD KEGG:ns NR:ns ## COG: tauD COG2175 # Protein_GI_number: 16128353 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Probable taurine catabolism dioxygenase # Organism: Escherichia coli K12 # 1 283 1 283 283 564 100.0 1e-161 MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQRAL AQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELP STGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAK NPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRW QPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRAG >gi|223713555|gb|ACDM01000043.1| GENE 129 136712 - 137539 1102 275 aa, chain - ## HITS:1 COG:tauC KEGG:ns NR:ns ## COG: tauC COG0600 # Protein_GI_number: 16128352 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1 275 1 275 275 431 100.0 1e-120 MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVATLQLISPLFLPPPQQVLE KLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFGIPVGIAMGLSPTVRGILDPIIE LYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSVQQVRIRAAQSLG ASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ >gi|223713555|gb|ACDM01000043.1| GENE 130 137536 - 138303 267 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 205 1 215 245 107 31 3e-22 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQL AGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEG AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGK QVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFARRFVAGESSRSIKSDPQFIAMR EYVLSRVFEQREAFS >gi|223713555|gb|ACDM01000043.1| GENE 131 138316 - 139278 1168 320 aa, chain - ## HITS:1 COG:tauA KEGG:ns NR:ns ## COG: tauA COG4521 # Protein_GI_number: 16128350 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type taurine transport system, periplasmic component # Organism: Escherichia coli K12 # 1 320 20 339 339 587 100.0 1e-167 MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDS GASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDL IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAV NALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANPD VWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLKEQ GKVPAVANDYSQYVTSRFVQ >gi|223713555|gb|ACDM01000043.1| GENE 132 139232 - 139456 131 74 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_0388 NR:ns ## KEGG: EcE24377A_0388 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 74 1 74 74 132 98.0 4e-30 MNASAARSVLRDEIAMIVCSPVLLWEQYSGIKTFIKRISRYRTDDFILSKKTAKERLNMQ LLRSNNWENYYTSF >gi|223713555|gb|ACDM01000043.1| GENE 133 139894 - 140565 400 223 aa, chain + ## HITS:1 COG:yaiS KEGG:ns NR:ns ## COG: yaiS COG2120 # Protein_GI_number: 16128349 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Escherichia coli K12 # 50 185 1 136 136 274 99.0 8e-74 MDKVLDSALLSSANKRKGILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTD GIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISALEDIIKNQIPSDVEIMRVY TMHDADRHQDHLAVYQASMVACRTIPQILGYETPSTWLSFMPQVFESVKEEYFTVKLAAL KKHKSQERRDYMRHDRLRAVAQFRGQQVNSDLGEGFVIHKMIL >gi|223713555|gb|ACDM01000043.1| GENE 134 140575 - 141771 708 398 aa, chain + ## HITS:1 COG:yaiP KEGG:ns NR:ns ## COG: yaiP COG1215 # Protein_GI_number: 16128348 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 398 1 398 398 802 100.0 0 MKTWIFICMSIAMLLWFLSTLRRKPSQKKGCIDAIIPAYNEGPCLAQSLDNLLRNPYFCR VICVNDGSTDNTEAVMAEVKRKWGDRFVAVTQKNTGKGGALMNGLNYATCDQVFLSDADT YVPPDQDGMGYMLAEIERGADAVGGIPSTALKGAGLLPHIRATVKLPMIVMKRTLQQLLG GAPFIISGACGMFRTDVLRKFGFSDRTKVEDLDLTWTLVANGYRIRQANRCIVYPQECNS PREEWRRWRRWIVGYAVCMRLHKRLLFSRFGIFSIFPMLLVVLYGVGIYLTTWFNEFITT GPHGVVLAMFPLIWVGVVCVIGAFSAWFHRCWLLVPLAPLSVVYVLLAYAIWIIYGLIAF FTGREPQRDKPTRYSALVEASTAYSQPSVTGTEKLSEA >gi|223713555|gb|ACDM01000043.1| GENE 135 141620 - 142330 412 236 aa, chain + ## HITS:1 COG:b0359 KEGG:ns NR:ns ## COG: b0359 COG0110 # Protein_GI_number: 16128344 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 100 236 11 147 147 269 100.0 3e-72 MPSGLFMDLLPFLLDANLSATNPPAIPHWWKRQPLIPNLLSQELKNYLKLNVKEKNIQIA DQVIIDETAGEVVIGANTRICHGAVIQGPVVIGANCLIGNYAFIRPGTIISNGVKIGFAT EIKNAVIEAEATIGPQCFIADSVVANQAYLGAQVRTSNHRLDEQPVSVRTPEGIIATGCD KLGCYIGQRSRLGVQVIILPGRIISPNTQLGPRVIVERNLPTGTYSLRQELIRTGD >gi|223713555|gb|ACDM01000043.1| GENE 136 142332 - 143105 858 257 aa, chain + ## HITS:1 COG:no KEGG:JW0349 NR:ns ## KEGG: JW0349 # Name: yaiO # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 257 1 257 257 484 100.0 1e-135 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP TDDFNGLQLAARLTWKF >gi|223713555|gb|ACDM01000043.1| GENE 137 143293 - 143568 282 91 aa, chain + ## HITS:1 COG:ECs0412 KEGG:ns NR:ns ## COG: ECs0412 COG1937 # Protein_GI_number: 15829666 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 91 8 98 98 154 100.0 4e-38 MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEVLESH IRETFDRNDCYSREVSQSVDDTIELVRAYLK >gi|223713555|gb|ACDM01000043.1| GENE 138 143603 - 144712 1227 369 aa, chain + ## HITS:1 COG:ECs0411 KEGG:ns NR:ns ## COG: ECs0411 COG1062 # Protein_GI_number: 15829665 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Escherichia coli O157:H7 # 1 369 1 369 369 726 99.0 0 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVL GHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPD GTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHN TAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPND YDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGAGQEISTRP FQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEG KSIRTVIRY >gi|223713555|gb|ACDM01000043.1| GENE 139 144806 - 145639 603 277 aa, chain + ## HITS:1 COG:yaiM KEGG:ns NR:ns ## COG: yaiM COG0627 # Protein_GI_number: 16128340 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1 277 1 277 277 569 99.0 1e-162 MELIEKHVSFGGWQNVYRHYSQSLKCEMNVGVYLPPKAANEKLPVLYWLSGLTCNEQNFI TKSGMQRYAAEHNIIVVAPDTSPRGSHVADADRYDLGQGAGFYLNATQAPWNEHYKMYDY IRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQVPWG QQAFAAYLAENKDAWLDYDPVSLISQGQRVAEIMVDQGLSDDFYAEQLRTPNLEKICQEM NIKTLIRYHEGYDHSYYFVSSFIGEHIAYHANKLNMR >gi|223713555|gb|ACDM01000043.1| GENE 140 145863 - 146402 652 179 aa, chain - ## HITS:1 COG:yaiL KEGG:ns NR:ns ## COG: yaiL COG3122 # Protein_GI_number: 16128339 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 179 40 218 218 295 100.0 4e-80 MAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQ KQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIA RLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMW >gi|223713555|gb|ACDM01000043.1| GENE 141 146504 - 147715 1063 403 aa, chain - ## HITS:1 COG:mhpT KEGG:ns NR:ns ## COG: mhpT COG0477 # Protein_GI_number: 16128338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 13 403 28 418 418 576 100.0 1e-164 MSTRTPSSSSSRLMLTIGLCFLVALMEGLDLQAAGIAAGGIAQAFALDKMQMGWIFSAGI LGLLPGALVGGMLADRYGRKRILIGSVALFGLFSLATAIAWDFPSLVFARLMTGVGLGAA LPNLIALTSEAAGPRFRGTAVSLMYCGVPIGAALAATLGFAGANLAWQTVFWVGGVVPLI LVPLLMRWLPESAVFAGEKQSAPPLRALFAPETATATLLLWLCYFFTLLVVYMLINWLPL LLVEQGFQPSQAAGVMFALQMGAASGTLMLGALMDKLRPVTMSLLIYSGMLASLLALGTV SSFNGMLLAGFVAGLFATGGQSVLYALAPLFYSSQIRATGVGTAVAVGRLGAMSGPLLAG KMLALGTGTVGVMAASAPGILVAGLAVFILMSRRSRIQPCADA Prediction of potential genes in microbial genomes Time: Mon May 16 19:02:27 2011 Seq name: gi|223713554|gb|ACDM01000044.1| Escherichia sp. 4_1_40B cont1.44, whole genome shotgun sequence Length of sequence - 24949 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 7, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 4/0.250 - CDS 1051 - 2001 930 ## COG4569 Acetaldehyde dehydrogenase (acetylating) 3 1 Op 3 1/1.000 - CDS 1998 - 2807 861 ## COG3971 2-keto-4-pentenoate hydratase 4 1 Op 4 . - CDS 2817 - 3683 995 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 5 1 Op 5 . - CDS 3701 - 4645 799 ## SSON_0295 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16) 6 1 Op 6 . - CDS 4647 - 6311 1850 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - Prom 6402 - 6461 5.8 + Prom 6350 - 6409 6.1 7 2 Op 1 . + CDS 6502 - 7335 657 ## COG1414 Transcriptional regulator 8 2 Op 2 1/1.000 + CDS 7403 - 8494 977 ## COG1609 Transcriptional regulators + Prom 8499 - 8558 4.4 9 3 Op 1 3/0.750 + CDS 8617 - 11691 2467 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 11699 - 11731 5.4 10 3 Op 2 4/0.250 + CDS 11743 - 12996 1344 ## COG0477 Permeases of the major facilitator superfamily 11 3 Op 3 . + CDS 13062 - 13673 275 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Term 13674 - 13710 3.5 12 4 Op 1 3/0.750 - CDS 13776 - 14930 1155 ## COG2807 Cyanate permease 13 4 Op 2 4/0.250 - CDS 14963 - 15433 787 ## COG1513 Cyanate lyase 14 4 Op 3 . - CDS 15464 - 16123 509 ## COG0288 Carbonic anhydrase - Prom 16216 - 16275 4.2 + Prom 16109 - 16168 2.7 15 5 Tu 1 . + CDS 16196 - 17131 512 ## COG0583 Transcriptional regulator - Term 17311 - 17356 -0.1 16 6 Op 1 6/0.000 - CDS 17468 - 18751 1337 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 17 6 Op 2 2/1.000 - CDS 18741 - 20000 1480 ## COG1457 Purine-cytosine permease and related proteins - Prom 20038 - 20097 5.6 18 7 Op 1 4/0.250 - CDS 20330 - 22216 2091 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 19 7 Op 2 8/0.000 - CDS 22256 - 23707 1653 ## COG2079 Uncharacterized protein involved in propionate catabolism 20 7 Op 3 . - CDS 23741 - 24910 1267 ## COG0372 Citrate synthase Predicted protein(s) >gi|223713554|gb|ACDM01000044.1| GENE 1 41 - 1054 1279 337 aa, chain - ## HITS:1 COG:mhpE KEGG:ns NR:ns ## COG: mhpE COG0119 # Protein_GI_number: 16128337 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli K12 # 1 337 1 337 337 631 100.0 0 MNGKKLYISDVTLRDGMHAIRHQYSLENVRQIAKALDDARVDSIEVAHGDGLQGSSFNYG FGAHSDLEWIEAAADVVKHAKIATLLLPGIGTIHDLKNAWQAGARVVRVATHCTEADVSA QHIQYARELGMDTVGFLMMSHMTTPENLAKQAKLMEGYGATCIYVVDSGGAMNMSDIRDR FRALKAELKPETQTGMHAHHNLSLGVANSIAAVEEGCDRIDASLAGMGAGAGNAPLEVFI AAADKLGWQHGTDLYALMDAADDLVRPLQDRPVRVDRETLALGYAGVYSSFLRHCETAAA RYGLSAVDILVELGKRRMVGGQEDMIVDVALDLRNNK >gi|223713554|gb|ACDM01000044.1| GENE 2 1051 - 2001 930 316 aa, chain - ## HITS:1 COG:mhpF KEGG:ns NR:ns ## COG: mhpF COG4569 # Protein_GI_number: 16128336 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetaldehyde dehydrogenase (acetylating) # Organism: Escherichia coli K12 # 1 316 1 316 316 578 100.0 1e-165 MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARARRMGVATTHEGVI GLMNMPEFADIDIVFDATSAGAHVKNDAALREAKPDIRLIDLTPAAIGPYCVPVVNLEAN VDQLNVNMVTCGGQATIPMVAAVSRVARVHYAEIIASIASKSAGPGTRANIDEFTETTSR AIEVVGGAAKGKAIIVLNPAEPPLMMRDTVYVLSDEASQDDIEASINEMAEAVQAYVPGY RLKQRVQFEVIPQDKPVNLPGVGQFSGLKTAVWLEVEGAAHYLPAYAGNLDIMTSSALAT AEKMAQSLARKAGEAA >gi|223713554|gb|ACDM01000044.1| GENE 3 1998 - 2807 861 269 aa, chain - ## HITS:1 COG:mhpD KEGG:ns NR:ns ## COG: mhpD COG3971 # Protein_GI_number: 16128335 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Escherichia coli K12 # 1 269 3 271 271 538 100.0 1e-153 MTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHDVAQGRRVVGRK VGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATD ITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGLDLKN CAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVN AGDRFEAHIEGIGSVAATFSSAAPKGSLS >gi|223713554|gb|ACDM01000044.1| GENE 4 2817 - 3683 995 288 aa, chain - ## HITS:1 COG:mhpC KEGG:ns NR:ns ## COG: mhpC COG0596 # Protein_GI_number: 16128334 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 288 22 309 309 603 100.0 1e-172 MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDP LVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSS VAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD TSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDR FVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFLARP >gi|223713554|gb|ACDM01000044.1| GENE 5 3701 - 4645 799 314 aa, chain - ## HITS:1 COG:no KEGG:SSON_0295 NR:ns ## KEGG: SSON_0295 # Name: mhpB # Def: 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16) # Organism: S.sonnei # Pathway: Phenylalanine metabolism [PATH:ssn00360] # 1 314 1 314 314 640 100.0 0 MHAYLHCLSHSPLVGYVDPAQEVLDEVNGVIASARERIAAFSPELVVLFAPDHYNGFFYD VMPPFCLGVGATAIGDFGSAAGELPVPVELAEACAHAVMKSGIDLAVSYCMQVDHGFAQP LEFLLGGLDKVPVLPVFINGVATPLPGFQRTRMLGEAIGRFTSTLNKRVLFLGSGGLSHQ PPVPELAKADAHMRDRLLGSGKDLPASERELRQQRVISAAEKFVEDQRTLHPLNPIWDNQ FMTLLEQGRIQELDAVSNEELSAIAGKSTHEIKTWVAAFAAISAFGNWRSEGRYYRPIPE WIAGFGSLSARTEN >gi|223713554|gb|ACDM01000044.1| GENE 6 4647 - 6311 1850 554 aa, chain - ## HITS:1 COG:mhpA KEGG:ns NR:ns ## COG: mhpA COG0654 # Protein_GI_number: 16128332 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 554 1 554 554 1136 99.0 0 MAIQPPDIQPAVNHSVQVAIAGAGPVGLMMANYLGQMGIDVLVVEKLDKLIDYPRAIGID DEALRTMQSVGLVDDVLPHTTPWHAMRFLTPKGRCFADIQPMTDEFGWPRRNAFIQPQVD AVMLEGVSRFPNVRCLFSRELEAFSQQDDEVTLHLKTAEGQREIVKAQWLVACDGGASFV RRTLNVPFEGKTAPNQWIVVDIANDPLSTPHIYLCCDPVRPYVSAALPHAVRRFEFMVMP GETEEQLREPQNMRKLLSKVLPNPDNVELIRQRVYTHNARLAQRFRIDRVLLAGDAAHIM PVWQGQGYNSGMRDAFNLAWKLALVIQGKARDALLDTYQQERRDHAKAMIDLSVTAGNVL APPKRWQGTLRDGVSWLLNYLPPVKRYFLEMRFKPMPQYYGGALMREGEAKHSPVGKMFI QPKVTLENGDVTLLDNAIGANFAVIGWGCNPLWGMSDEQIQQWRALGTRFIQVVPEVQIH TAQDNHDGVLRVGDTQGRLRSWFAQHNASLVVMRPDRFVAATAIPQTLGKTLNKLASVMT LTRPDADVSVEKVA >gi|223713554|gb|ACDM01000044.1| GENE 7 6502 - 7335 657 277 aa, chain + ## HITS:1 COG:mhpR KEGG:ns NR:ns ## COG: mhpR COG1414 # Protein_GI_number: 16128331 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 277 39 315 315 507 100.0 1e-143 MQNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLLAELSGLHRTTVRRLLETLQEEGY VRRSPSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLREVVWPTDVSTLDVDAMVV RETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPEQDRKELIEMLASRPGDDYQLAR EPLKLEAILARARKEGYGQNYRGWDQEEKIASIAVPLRSEQRVIGCLNLVYMASAMTIEQ AAEKHLPALQRVAKQIEEGVESQAILVAGRRSGMHLR >gi|223713554|gb|ACDM01000044.1| GENE 8 7403 - 8494 977 363 aa, chain + ## HITS:1 COG:lacI KEGG:ns NR:ns ## COG: lacI COG1609 # Protein_GI_number: 16128330 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 4 363 1 360 360 645 99.0 0 MVNVKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLA GKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQ RVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVAL GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGI VPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLG QTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRLE SGQ >gi|223713554|gb|ACDM01000044.1| GENE 9 8617 - 11691 2467 1024 aa, chain + ## HITS:1 COG:lacZ KEGG:ns NR:ns ## COG: lacZ COG3250 # Protein_GI_number: 16128329 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1 1024 1 1024 1024 2102 99.0 0 MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR FAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENP TGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRA GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAV LEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPK LWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKTLLIRGVNRHEH HPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHG MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVD PSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYA HAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDR QFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALD GKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQ WRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTP LRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTA HAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLG LGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNI SRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLV WCQK >gi|223713554|gb|ACDM01000044.1| GENE 10 11743 - 12996 1344 417 aa, chain + ## HITS:1 COG:lacY KEGG:ns NR:ns ## COG: lacY COG0477 # Protein_GI_number: 16128328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 417 1 417 417 685 99.0 0 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQ PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALIL AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIAGKNALLLAGTIMS VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA >gi|223713554|gb|ACDM01000044.1| GENE 11 13062 - 13673 275 203 aa, chain + ## HITS:1 COG:lacA KEGG:ns NR:ns ## COG: lacA COG0110 # Protein_GI_number: 16128327 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1 203 1 203 203 410 100.0 1e-114 MNMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGE NAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHE LRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCR VIREINDRDKHYYFKDYKVESSV >gi|223713554|gb|ACDM01000044.1| GENE 12 13776 - 14930 1155 384 aa, chain - ## HITS:1 COG:cynX KEGG:ns NR:ns ## COG: cynX COG2807 # Protein_GI_number: 16128326 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Escherichia coli K12 # 1 384 1 384 384 591 100.0 1e-169 MLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA SSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALM TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPMQLPVLWAMVCGLGLGGA FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC VVGLMIITLRFAPVRFPQLWVKEA >gi|223713554|gb|ACDM01000044.1| GENE 13 14963 - 15433 787 156 aa, chain - ## HITS:1 COG:cynS KEGG:ns NR:ns ## COG: cynS COG1513 # Protein_GI_number: 16128325 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate lyase # Organism: Escherichia coli K12 # 1 156 1 156 156 291 100.0 3e-79 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARL VGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGI ISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF >gi|223713554|gb|ACDM01000044.1| GENE 14 15464 - 16123 509 219 aa, chain - ## HITS:1 COG:ZcynT KEGG:ns NR:ns ## COG: ZcynT COG0288 # Protein_GI_number: 15800068 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli O157:H7 EDL933 # 1 219 1 219 219 429 100.0 1e-120 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVI RNAGNIVPSYGPEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPAVS HWLRYADSARVVNEARPHSDLPSKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHGW VYDIESGSIAAFDGATRQFVPLAANPRVCAIPLRQPTAA >gi|223713554|gb|ACDM01000044.1| GENE 15 16196 - 17131 512 311 aa, chain + ## HITS:1 COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 13 311 1 299 299 554 100.0 1e-158 MMSSIGFTYRLRMLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLF DRSGRTIRLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGP LMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALV VAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVL ELIRRTSLSTLLPAAIATQHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALD KCAVVGGNESR >gi|223713554|gb|ACDM01000044.1| GENE 16 17468 - 18751 1337 427 aa, chain - ## HITS:1 COG:codA KEGG:ns NR:ns ## COG: codA COG0402 # Protein_GI_number: 16128322 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 427 1 427 427 882 100.0 0 MSNNALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVE PHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHV RTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADV VGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEGMG ARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVK EMLESGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSAR TLNLQDYGIAAGNSANLIILPAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQP EAIDYKR >gi|223713554|gb|ACDM01000044.1| GENE 17 18741 - 20000 1480 419 aa, chain - ## HITS:1 COG:codB KEGG:ns NR:ns ## COG: codB COG1457 # Protein_GI_number: 16128321 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Escherichia coli K12 # 1 419 1 419 419 669 99.0 0 MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGN LLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPV GTATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLD ALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMF IFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSK TLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMS VNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE >gi|223713554|gb|ACDM01000044.1| GENE 18 20330 - 22216 2091 628 aa, chain - ## HITS:1 COG:prpE KEGG:ns NR:ns ## COG: prpE COG0365 # Protein_GI_number: 16128320 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Escherichia coli K12 # 1 628 1 628 628 1283 99.0 0 MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDR WLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAE AHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDD AISQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYT SGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLAG MATIVYEGLPTWPDCGVWWKIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLY LAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYN VQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYATFDWG IRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAF VIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQA ICEGRDPGDLTTIDDPASLDQIRQAMEE >gi|223713554|gb|ACDM01000044.1| GENE 19 22256 - 23707 1653 483 aa, chain - ## HITS:1 COG:prpD KEGG:ns NR:ns ## COG: prpD COG2079 # Protein_GI_number: 16128319 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in propionate catabolism # Organism: Escherichia coli K12 # 1 483 1 483 483 1008 100.0 0 MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKL LGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI LATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVAST AVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAK TGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAA MTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGR LTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEV VVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDL YVI >gi|223713554|gb|ACDM01000044.1| GENE 20 23741 - 24910 1267 389 aa, chain - ## HITS:1 COG:prpC KEGG:ns NR:ns ## COG: prpC COG0372 # Protein_GI_number: 16128318 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Escherichia coli K12 # 1 389 1 389 389 780 100.0 0 MSDTTILQNSTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAKHCEFEE VAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCT LPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGE KPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANE VSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGS LKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIE QRQDNKIIRPSANYVGPEDRPFVALDKRQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:02:47 2011 Seq name: gi|223713553|gb|ACDM01000045.1| Escherichia sp. 4_1_40B cont1.45, whole genome shotgun sequence Length of sequence - 54818 bp Number of predicted genes - 51, with homology - 50 Number of transcription units - 29, operones - 13 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 106 - 996 994 ## COG2513 PEP phosphonomutase and related enzymes - Prom 1080 - 1139 4.8 + Prom 1058 - 1117 4.7 2 2 Tu 1 . + CDS 1235 - 2821 1383 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 2824 - 2869 2.7 3 3 Tu 1 . - CDS 2978 - 3193 323 ## B21_00288 hypothetical protein - Prom 3315 - 3374 4.5 + Prom 3035 - 3094 6.3 4 4 Tu 1 . + CDS 3343 - 4011 565 ## COG1280 Putative threonine efflux protein + Term 4138 - 4171 -0.4 - TRNA 4263 - 4343 28.4 # Pseudo ??? 0 0 5 5 Tu 1 . - CDS 4686 - 5501 405 ## B21_00285 hypothetical protein - Prom 5528 - 5587 5.5 6 6 Tu 1 . - CDS 5744 - 6793 1075 ## COG1064 Zn-dependent alcohol dehydrogenases - Prom 6980 - 7039 2.4 7 7 Op 1 3/0.571 - CDS 7170 - 8552 1485 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 8 7 Op 2 . - CDS 8562 - 9512 1098 ## COG0549 Carbamate kinase - Prom 9558 - 9617 6.6 - Term 9829 - 9865 2.4 9 8 Op 1 . - CDS 9934 - 11352 1727 ## JW0313 conserved hypothetical protein 10 8 Op 2 . - CDS 11352 - 12899 1989 ## COG0074 Succinyl-CoA synthetase, alpha subunit 11 8 Op 3 . - CDS 12889 - 13752 438 ## JW0311 hypothetical protein 12 8 Op 4 . - CDS 13792 - 14397 675 ## COG0666 FOG: Ankyrin repeat - Prom 14431 - 14490 4.0 13 9 Op 1 . + CDS 14655 - 15152 404 ## JW0309 predicted inner membrane protein 14 9 Op 2 . + CDS 15244 - 16176 954 ## COG0583 Transcriptional regulator 15 10 Tu 1 . - CDS 16218 - 17306 728 ## COG2200 FOG: EAL domain - Prom 17473 - 17532 4.5 + Prom 17547 - 17606 5.1 16 11 Tu 1 . + CDS 17626 - 17811 81 ## ECBD_3343 hypothetical protein + Term 17950 - 17986 -1.0 - Term 18128 - 18162 4.0 17 12 Tu 1 . - CDS 18181 - 20214 2355 ## COG1292 Choline-glycine betaine transporter - Prom 20266 - 20325 3.0 + Prom 20230 - 20289 5.0 18 13 Op 1 6/0.000 + CDS 20325 - 20930 550 ## COG1309 Transcriptional regulator 19 13 Op 2 10/0.000 + CDS 20944 - 22416 1615 ## COG1012 NAD-dependent aldehyde dehydrogenases 20 13 Op 3 . + CDS 22430 - 24100 1715 ## COG2303 Choline dehydrogenase and related flavoproteins + Prom 24168 - 24227 2.2 21 14 Tu 1 . + CDS 24313 - 24981 17 ## B21_00269 hypothetical protein + Term 25086 - 25120 0.8 - Term 25072 - 25110 7.2 22 15 Op 1 13/0.000 - CDS 25224 - 25919 536 ## COG1556 Uncharacterized conserved protein 23 15 Op 2 17/0.000 - CDS 25912 - 27339 1126 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 24 15 Op 3 . - CDS 27350 - 28069 561 ## COG0247 Fe-S oxidoreductase - Prom 28192 - 28251 7.6 + Prom 28189 - 28248 6.9 25 16 Tu 1 . + CDS 28268 - 28438 92 ## ECH74115_0358 hypothetical protein 26 17 Tu 1 . - CDS 28596 - 29450 317 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 29560 - 29619 8.8 + Prom 29501 - 29560 5.3 27 18 Op 1 . + CDS 29676 - 31001 385 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 28 18 Op 2 . + CDS 31098 - 31346 76 ## G2583_0402 hypothetical protein 29 18 Op 3 . + CDS 31358 - 31951 618 ## COG3059 Predicted membrane protein 30 19 Tu 1 . - CDS 32110 - 32214 70 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 32344 - 32403 4.5 + Prom 32345 - 32404 3.0 31 20 Op 1 . + CDS 32541 - 33392 413 ## COG2207 AraC-type DNA-binding domain-containing proteins 32 20 Op 2 . + CDS 33352 - 33507 72 ## gi|194438170|ref|ZP_03070262.1| hypothetical protein EC1011_2792 - Term 33459 - 33493 4.6 33 21 Op 1 . - CDS 33532 - 34080 307 ## EcolC_3322 Ig domain-containing protein 34 21 Op 2 . - CDS 34085 - 37123 2087 ## EcolC_3322 Ig domain-containing protein - Prom 37329 - 37388 7.2 + Prom 38078 - 38137 4.7 35 22 Tu 1 . + CDS 38238 - 38339 103 ## + Prom 38617 - 38676 5.2 36 23 Op 1 6/0.000 + CDS 38700 - 38966 460 ## PROTEIN SUPPORTED gi|110640565|ref|YP_668293.1| 50S ribosomal protein L31 type B 37 23 Op 2 . + CDS 38963 - 39106 241 ## PROTEIN SUPPORTED gi|26246304|ref|NP_752343.1| 50S ribosomal protein L36 + Term 39132 - 39169 3.7 + Prom 39989 - 40048 6.1 38 24 Op 1 . + CDS 40192 - 40734 189 ## COG2771 DNA-binding HTH domain-containing proteins 39 24 Op 2 . + CDS 40809 - 41396 595 ## JW0287 conserved hypothetical protein + Term 41413 - 41445 3.0 40 25 Op 1 . + CDS 41454 - 42122 444 ## JW0286 hypothetical protein 41 25 Op 2 . + CDS 42148 - 44673 1934 ## B21_00253 hypothetical protein 42 25 Op 3 . + CDS 44687 - 45760 451 ## JW0284 predicted receptor + Prom 45770 - 45829 2.1 43 26 Op 1 . + CDS 45965 - 46306 337 ## ECO103_0267 hypothetical protein 44 26 Op 2 . + CDS 46275 - 46985 473 ## JW5030 conserved hypothetical protein + Term 47233 - 47273 3.2 - Term 47657 - 47700 2.7 45 27 Tu 1 . - CDS 47842 - 48456 304 ## COG3477 Predicted periplasmic/secreted protein - Prom 48511 - 48570 5.4 46 28 Op 1 15/0.000 + CDS 48874 - 49563 450 ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs 47 28 Op 2 12/0.000 + CDS 49560 - 50516 655 ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 48 28 Op 3 6/0.000 + CDS 50513 - 52711 1670 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 49 28 Op 4 2/0.571 + CDS 52721 - 53677 507 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family 50 28 Op 5 1/1.000 + CDS 53656 - 54066 309 ## COG0583 Transcriptional regulator + Term 54314 - 54357 3.1 + Prom 54407 - 54466 1.9 51 29 Tu 1 . + CDS 54501 - 54686 76 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|223713553|gb|ACDM01000045.1| GENE 1 106 - 996 994 296 aa, chain - ## HITS:1 COG:prpB KEGG:ns NR:ns ## COG: prpB COG2513 # Protein_GI_number: 16128316 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Escherichia coli K12 # 1 296 1 296 296 562 100.0 1e-160 MSLHSPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLG ISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGA KRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEA GAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAF RAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEKLDNLFARSQVK >gi|223713553|gb|ACDM01000045.1| GENE 2 1235 - 2821 1383 528 aa, chain + ## HITS:1 COG:prpR KEGG:ns NR:ns ## COG: prpR COG1221 # Protein_GI_number: 16128315 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1 528 1 528 528 1029 100.0 0 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS >gi|223713553|gb|ACDM01000045.1| GENE 3 2978 - 3193 323 71 aa, chain - ## HITS:1 COG:no KEGG:B21_00288 NR:ns ## KEGG: B21_00288 # Name: yahO # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 66 1 66 91 102 100.0 5e-21 MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIK KADEKGLMCWY >gi|223713553|gb|ACDM01000045.1| GENE 4 3343 - 4011 565 222 aa, chain + ## HITS:1 COG:yahN KEGG:ns NR:ns ## COG: yahN COG1280 # Protein_GI_number: 16128313 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1 222 2 223 223 401 100.0 1e-112 MQLVHLFMDEITMDPLHAVYLTVGLFVITFFNPGANLFVVVQTSLASGRRAGVLTGLGVA LGDAFYSGLGLFGLATLITQCEEIFSLIRIVGGAYLLWFAWCSMRRQSTPQMSTLQQPIS APWYVFFRRGLITDLSNPQTVLFFISIFSVTLNAETPTWARLMAWAGIVLASIIWRVFLS QAFSLPAVRRAYGRMQRVASRVIGAIIGVFALRLIYEGVTQR >gi|223713553|gb|ACDM01000045.1| GENE 5 4686 - 5501 405 271 aa, chain - ## HITS:1 COG:no KEGG:B21_00285 NR:ns ## KEGG: B21_00285 # Name: yahL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 271 1 271 271 482 100.0 1e-135 MISLKAPHNNLMPYTQQSILNTVKNNQLPEDIKSSLVSCVDIFKVLIKQYYDYPYDCRDD LVDDDKLIHLMAAVRDCEWSDDNALTINVQFNDFPGFYDWMDYPDHPVKFVFHILENQKG TVWVYDQDDAFLDIKANVQAGRFTGLKKLVQFIDSVRTDCKCILLEYHMPLLRIFPKGKE CMHVEKWLREMSSIPETDAPIKQALAHGLLLHLKNIYPVFPESLVMLLLSVLDVKTYRDD ARLNEWISNRVQELGDRYYPVNKHVKIRYTL >gi|223713553|gb|ACDM01000045.1| GENE 6 5744 - 6793 1075 349 aa, chain - ## HITS:1 COG:yahK KEGG:ns NR:ns ## COG: yahK COG1064 # Protein_GI_number: 16128310 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1 349 1 349 349 690 100.0 0 MKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPD EPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGV VGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDF ILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPET QEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTLTD >gi|223713553|gb|ACDM01000045.1| GENE 7 7170 - 8552 1485 460 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 460 1 460 460 927 100.0 0 MKESNSRREFLSQSGKMVTAAALFGTSVPLAHAAVAGTLNCEANNTMKITDPHYYLDNVL LETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKLHPDATLPHYDAGGKLMLPTTRDM HIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTI ARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFPQHGLLLSKSEPLMREAMQAGAH YVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQL KGKLTISHAFALATLNEQQVDELANRMVVQQISIASTVPIGTLHMPLKQLHDKGVKVMTG TDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKA QDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG >gi|223713553|gb|ACDM01000045.1| GENE 8 8562 - 9512 1098 316 aa, chain - ## HITS:1 COG:yahI KEGG:ns NR:ns ## COG: yahI COG0549 # Protein_GI_number: 16128308 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 316 1 316 316 584 100.0 1e-167 MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLD LRRAEIAHKREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDK NDPGFAHPTKPIGAFFSDSQRDELQKANPDWCFVEDAGRGYRRVVASPEPKRIVEAPAIK ALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK VCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPEC LPAALRGETGTHIIKT >gi|223713553|gb|ACDM01000045.1| GENE 9 9934 - 11352 1727 472 aa, chain - ## HITS:1 COG:no KEGG:JW0313 NR:ns ## KEGG: JW0313 # Name: yahG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 472 1 472 472 941 100.0 0 MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLAD KIAAANQQALERIIQSHPVLIGFDQAINVVPGMTAKTILHAGPPITWEKMCGAMKGAVTG ALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNIAY TNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPILRDAMKIIGEIDLRLMLAQALHMGDE CHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAH GIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAIT ETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPSAID ITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAILGWCERYGV >gi|223713553|gb|ACDM01000045.1| GENE 10 11352 - 12899 1989 515 aa, chain - ## HITS:1 COG:yahF KEGG:ns NR:ns ## COG: yahF COG0074 # Protein_GI_number: 16128305 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli K12 # 1 515 1 515 515 988 100.0 0 MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQA KNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVIS VNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAA LCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI GMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARG TKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAV MEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEA RDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSL EQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA >gi|223713553|gb|ACDM01000045.1| GENE 11 12889 - 13752 438 287 aa, chain - ## HITS:1 COG:no KEGG:JW0311 NR:ns ## KEGG: JW0311 # Name: yahE # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 287 1 287 287 599 100.0 1e-170 MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFD DLFRHGDKVQFDDQGITVGQHLHIEMSRCRRWLSPTLQMTAVNFHLIAWLQWHDIIHQHL GENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIASAVASMMGLGIGLTPSADD YLTGLALILFIPGHPAEKYKEEFYLGLQRGKNNTTLLSAITLEAALQQRCRENIHRFIHN IIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS >gi|223713553|gb|ACDM01000045.1| GENE 12 13792 - 14397 675 201 aa, chain - ## HITS:1 COG:yahD KEGG:ns NR:ns ## COG: yahD COG0666 # Protein_GI_number: 16128303 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1 201 1 201 201 395 100.0 1e-110 MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALID AGADINKQDHTCLNPFLISCLNDDLTLLRIILPAKPDLNCVTRFGGVGLTPACEKGHLSI VKELLAHTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTP LELARERGFEEIAQLLIAAGA >gi|223713553|gb|ACDM01000045.1| GENE 13 14655 - 15152 404 165 aa, chain + ## HITS:1 COG:no KEGG:JW0309 NR:ns ## KEGG: JW0309 # Name: yahC # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 165 1 165 165 253 100.0 2e-66 MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLA VNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLG MTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATTKRDGY >gi|223713553|gb|ACDM01000045.1| GENE 14 15244 - 16176 954 310 aa, chain + ## HITS:1 COG:yahB KEGG:ns NR:ns ## COG: yahB COG0583 # Protein_GI_number: 16128301 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 310 1 310 310 634 99.0 0 MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRSTRSIE LTESGRYFFRKATDLLNDFYAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKK QFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWAFAIAPDH PLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG IGFLPDYMVREAMTQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFAPNGILTG IYQDLLHREN >gi|223713553|gb|ACDM01000045.1| GENE 15 16218 - 17306 728 362 aa, chain - ## HITS:1 COG:yahA_2 KEGG:ns NR:ns ## COG: yahA_2 COG2200 # Protein_GI_number: 16128300 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 101 362 1 262 262 552 100.0 1e-157 MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQK KQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENH EFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQT ADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIP VTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGH IVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKA GG >gi|223713553|gb|ACDM01000045.1| GENE 16 17626 - 17811 81 61 aa, chain + ## HITS:1 COG:no KEGG:ECBD_3343 NR:ns ## KEGG: ECBD_3343 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 61 1 61 61 115 100.0 6e-25 MSKGALYEFNNPDQLKIPLPHKHIASTFNDIMSKDVGYAYVSLLYACPLKTHSLRLNPFS K >gi|223713553|gb|ACDM01000045.1| GENE 17 18181 - 20214 2355 677 aa, chain - ## HITS:1 COG:ECs0360 KEGG:ns NR:ns ## COG: ECs0360 COG1292 # Protein_GI_number: 15829614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli O157:H7 # 1 677 1 677 677 1333 100.0 0 MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLL AATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQ YMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYP IFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIAL SVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFM GMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFT FTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLF YVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVI MGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGT RYTKQMMETVCYPAMEEVAQELRLRGAYVELKSLPPEEGQQLGHLDLLVHMGEEQNFVYQ IWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNF IHLHREAPGHSVMFPDA >gi|223713553|gb|ACDM01000045.1| GENE 18 20325 - 20930 550 201 aa, chain + ## HITS:1 COG:betI KEGG:ns NR:ns ## COG: betI COG1309 # Protein_GI_number: 16128298 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 7 201 1 195 195 357 99.0 6e-99 MNGVAKMPKLGMQSIRRRQLIDATLVAINEVGMHDATIAQIARRAGVSTGIISHYFRDKN GLLEATMRDITSQLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQVSSAAMKAWLAFWA SSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPREQAQEAGYGLAALIDGLWLRAALSGKP LDKTRANSLTRHFITQHLPTD >gi|223713553|gb|ACDM01000045.1| GENE 19 20944 - 22416 1615 490 aa, chain + ## HITS:1 COG:betB KEGG:ns NR:ns ## COG: betB COG1012 # Protein_GI_number: 16128297 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 490 1 490 490 959 100.0 0 MSRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIW ASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLI PALEGSQIPLRETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEV TPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMAN SAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKCKA AFEQKILARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKG DGFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIV TADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQ VEMAKFQSIF >gi|223713553|gb|ACDM01000045.1| GENE 20 22430 - 24100 1715 556 aa, chain + ## HITS:1 COG:betA KEGG:ns NR:ns ## COG: betA COG2303 # Protein_GI_number: 16128296 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Escherichia coli K12 # 1 556 1 556 556 1170 100.0 0 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY NWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLD CLPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQ QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDGKRAVGVEWLEG DSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHL EMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNI QYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQD WQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKM GYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALPRS TAGYFVANGMPVRAKK >gi|223713553|gb|ACDM01000045.1| GENE 21 24313 - 24981 17 222 aa, chain + ## HITS:1 COG:no KEGG:B21_00269 NR:ns ## KEGG: B21_00269 # Name: ykgH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 222 1 222 222 441 100.0 1e-122 MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTP GILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEIS RVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSP EIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ >gi|223713553|gb|ACDM01000045.1| GENE 22 25224 - 25919 536 231 aa, chain - ## HITS:1 COG:ykgG KEGG:ns NR:ns ## COG: ykgG COG1556 # Protein_GI_number: 16128293 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 231 52 282 282 444 100.0 1e-125 MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLT RCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAEN ISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLA EKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC >gi|223713553|gb|ACDM01000045.1| GENE 23 25912 - 27339 1126 475 aa, chain - ## HITS:1 COG:ykgF KEGG:ns NR:ns ## COG: ykgF COG1139 # Protein_GI_number: 16128292 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Escherichia coli K12 # 1 475 1 475 475 1003 100.0 0 MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRD HVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEI GVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPET PEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG MERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSE VLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPY ACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGM MAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG >gi|223713553|gb|ACDM01000045.1| GENE 24 27350 - 28069 561 239 aa, chain - ## HITS:1 COG:ykgE KEGG:ns NR:ns ## COG: ykgE COG0247 # Protein_GI_number: 16128291 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli K12 # 1 239 1 239 239 486 100.0 1e-137 MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMK NLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLG VVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSV KMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR >gi|223713553|gb|ACDM01000045.1| GENE 25 28268 - 28438 92 56 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_0358 NR:ns ## KEGG: ECH74115_0358 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 56 1 56 56 100 100.0 1e-20 MGKSTIIFGIRNPFKNGYIPYTYSELLIQGLLRYTLMVYKKITDNNHVSSNSRDFI >gi|223713553|gb|ACDM01000045.1| GENE 26 28596 - 29450 317 284 aa, chain - ## HITS:1 COG:ykgD KEGG:ns NR:ns ## COG: ykgD COG2207 # Protein_GI_number: 16128290 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 284 1 284 284 564 100.0 1e-161 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFT LRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEY NWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLG AVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSR ETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP >gi|223713553|gb|ACDM01000045.1| GENE 27 29676 - 31001 385 441 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 433 1 444 458 152 26 3e-36 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHG EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANF GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFT YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL PVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILR DQIFTHPSMSESLNDLFSLVK >gi|223713553|gb|ACDM01000045.1| GENE 28 31098 - 31346 76 82 aa, chain + ## HITS:1 COG:no KEGG:G2583_0402 NR:ns ## KEGG: G2583_0402 # Name: ykgI # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 82 2 83 83 121 97.0 8e-27 MVFYMFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDTIADIARKYNA SSWKVTSMRIDNNSTATAVLYK >gi|223713553|gb|ACDM01000045.1| GENE 29 31358 - 31951 618 197 aa, chain + ## HITS:1 COG:ykgB KEGG:ns NR:ns ## COG: ykgB COG3059 # Protein_GI_number: 16128286 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 197 4 200 200 387 100.0 1e-108 MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHP EDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLM AFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSARE ILKQRSNESSSTLKTEY >gi|223713553|gb|ACDM01000045.1| GENE 30 32110 - 32214 70 34 aa, chain - ## HITS:1 COG:ECs0338 KEGG:ns NR:ns ## COG: ECs0338 COG0656 # Protein_GI_number: 15829592 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli O157:H7 # 1 34 256 289 289 77 100.0 8e-15 MAQISSLDLGYVGESVKHFNPEFVRGCLAVKIHD >gi|223713553|gb|ACDM01000045.1| GENE 31 32541 - 33392 413 283 aa, chain + ## HITS:1 COG:ECs0337 KEGG:ns NR:ns ## COG: ECs0337 COG2207 # Protein_GI_number: 15829591 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 283 12 296 296 550 93.0 1e-156 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLC RAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLI RQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVS TFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYASFRYEGNWENYPDWVRNIYLI ELPARGLARVNGSDIERFYYNEDFVEKDGNDVVCEIFIPVRPV >gi|223713553|gb|ACDM01000045.1| GENE 32 33352 - 33507 72 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|194438170|ref|ZP_03070262.1| ## NR: gi|194438170|ref|ZP_03070262.1| hypothetical protein EC1011_2792 [Escherichia coli 101-1] # 2 51 1 50 50 70 98.0 4e-11 MLFAKFLFPFVRFSWSLSLIEFYPCLILFNQYQARYSVNNGVEYFNTIILY >gi|223713553|gb|ACDM01000045.1| GENE 33 33532 - 34080 307 182 aa, chain - ## HITS:1 COG:no KEGG:EcolC_3322 NR:ns ## KEGG: EcolC_3322 # Name: not_defined # Def: Ig domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 182 1237 1418 1418 311 99.0 5e-84 MTLTASSENLVLDPKGTAKTNEQGQAVFTGSTTIAATYTLTAKVEQANGQVSTKTAESKF VADDKNAVLAASPERVDSLVADGKTTATMTVTLMAGVNPVGGSMWVDIEAPEGVTEKDYQ FLPSKADHFSGGKITRTFSTSKPGVYTFTFNALTYGGYEMTPVKVTINAVAAETENGEEE MP >gi|223713553|gb|ACDM01000045.1| GENE 34 34085 - 37123 2087 1012 aa, chain - ## HITS:1 COG:no KEGG:EcolC_3322 NR:ns ## KEGG: EcolC_3322 # Name: not_defined # Def: Ig domain-containing protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 1012 1 1012 1418 1837 99.0 0 MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNT TVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV KLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMA GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDI RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLLTLSAGHK QGKSGENDTRFGLEVNYRIGEPLAKQLDTDSIRERRVLAGSRYDLVERNNNIVLEYRKSE VIRIALPERIEGKGGQTLSLGLVVSKATHGLKNVQWEAPSLLAEGGKITGQGSQWQVTLP AYRPGKDNYYAISAVAYDNKGNASKRVQTEVVITGAGMSADRTALTLDGQSRIQMLANGN EQRPLVLSLRDAEGQPVTGMKDQIKTELAFKPAGNIVTRSLKATKSQAKPTLGEFTETEA GVYQSVFTTGTQSGEATITVSVDGMSKTVTAELRATMMDVANSTLSANEPSGDVVADGQQ AYTLTLTAVDSEGNPVTGEASRLRFVPQDTNGVTVGAISEIKPGVYSATVSSTRAGNVVV RAFSEQYQLGTLQQTLKFVAGPLDAAHSSITLNPDKPVVGGTVTAIWTAKDAYDNPVTSL TPEAPSLAGAAAVGSTASGWTNNGDGTWTAQITLGSTAGELEVMPKLNGQDAAANAAKVT VVADALSSNQSKVSVAEDHVKAGESTTVTLIAKDAHGNTISGLSLSASLTGTASEGATVS SWTEKGDCSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNK APTVKMTTELTFTVKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVATL TLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQLAKG >gi|223713553|gb|ACDM01000045.1| GENE 35 38238 - 38339 103 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKENKVQQISHKLINIVVFVVIVEYAYLFLHFY >gi|223713553|gb|ACDM01000045.1| GENE 36 38700 - 38966 460 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110640565|ref|YP_668293.1| 50S ribosomal protein L31 type B [Escherichia coli 536] # 1 88 1 88 88 181 100 6e-45 MMKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPYVTIDVSSKSHPFYTG KLRTVASEGNVARFTQRFGRFVSTKKGA >gi|223713553|gb|ACDM01000045.1| GENE 37 38963 - 39106 241 47 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|26246304|ref|NP_752343.1| 50S ribosomal protein L36 [Escherichia coli CFT073] # 1 47 1 47 47 97 97 2e-19 MMKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR >gi|223713553|gb|ACDM01000045.1| GENE 38 40192 - 40734 189 180 aa, chain + ## HITS:1 COG:ykgK KEGG:ns NR:ns ## COG: ykgK COG2771 # Protein_GI_number: 16128279 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1 180 17 196 196 333 100.0 1e-91 MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFIN RDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFL RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ >gi|223713553|gb|ACDM01000045.1| GENE 39 40809 - 41396 595 195 aa, chain + ## HITS:1 COG:no KEGG:JW0287 NR:ns ## KEGG: JW0287 # Name: yagZ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 195 1 195 195 290 100.0 2e-77 MKKKVLAIALVTVFTGMGVAQAADVTAQAVATWSATAKKDTTSKLVVTPLGSLAFQYAEG IKGFNSQKGLFDVAIEGDSTATAFKLTSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTG DTVMIDTANGVLGGNLSPLANGYNASNRTTAQDGFTFSIISGTTNGTTAVTDYSTLPEGI WSGDVSVQFDATWTS >gi|223713553|gb|ACDM01000045.1| GENE 40 41454 - 42122 444 222 aa, chain + ## HITS:1 COG:no KEGG:JW0286 NR:ns ## KEGG: JW0286 # Name: yagY # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 222 1 222 222 417 99.0 1e-115 MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNSTDSGRLINIRLERLSS PLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPADEKERYYRIVWFDQALSDT QRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLTNTGNATLRILAYGPCLKAAN GKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKFIPVK >gi|223713553|gb|ACDM01000045.1| GENE 41 42148 - 44673 1934 841 aa, chain + ## HITS:1 COG:no KEGG:B21_00253 NR:ns ## KEGG: B21_00253 # Name: yagX # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 841 1 841 841 1545 99.0 0 MPLRRFSPGLKAQFAFGMVFLFVQPDASAADISAQQIGGVIIPQAFSQALQDGMSVPLYI HLAGSQGRQDDQRIGSAFIWLDDGQLRIRKIQLEESEDNASVSEQTRQQLMALANAPFNE ALTIPLTDNAQLDLSLRQLLLQLVVKREALGTVLRSRSEDIGQSSVNTLSSNLSYNLGVY NNQLRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRF AGGMLDTWNLQSLGPMTAISAGKIYGLSWGNQASSTIFDSSQSATPVIAFLPAAGEVHLT RDGRLLSVQNFTMGNHEVDTRGLPYGIYDVEVEVIVNGRVISKRTQRVNKLFSRGRGVGA PLAWQVWGGSFHMDRWSENGKKTRPAKESWLAGASTSGSLSTLSWAATGYGYDNQAVGET RLTLPLGGAINVNLQNMLASDSSWSSIGSISATLPGGFSSLWVNQEKTRIGNQLRRSDAD NRAIGGTLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQNVYSGTFGSLGLRAGIQRY NNGDSNANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTVGANLSR AISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTANGSVGWQGKNIAASG RTDGNAGVIFNTGLEDDGQISAKINGRIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSY DIVSGRKSRLTLYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENG EFVMDVDKKYPTIDFRYSGNKTCEVALELNQARGAVWVGDVVCSGLSSWAAVTQTGEENE S >gi|223713553|gb|ACDM01000045.1| GENE 42 44687 - 45760 451 357 aa, chain + ## HITS:1 COG:no KEGG:JW0284 NR:ns ## KEGG: JW0284 # Name: yagW # Def: predicted receptor # Organism: E.coli_J # Pathway: not_defined # 1 357 9 365 547 688 99.0 0 MIIFALIWPVTALRAAVSKTTWADAPAREFVFVENNSDDNFFVTPGGALDPRLTGANRWT GLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDMWLENSPVSSPLTGLRCINWYAGCNMT TSLILPQTTDASGFYGATVTSGGAKWMHGMLSDAFYQYMQQMPVGSSFTITINACQTSVN YDASSGARCKDQASGNWYVRNVTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRT QTIGSRSGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPV SNTAYYYTFNEMKSADSIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESG >gi|223713553|gb|ACDM01000045.1| GENE 43 45965 - 46306 337 113 aa, chain + ## HITS:1 COG:no KEGG:ECO103_0267 NR:ns ## KEGG: ECO103_0267 # Name: ecpD # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 113 435 547 547 225 99.0 4e-58 MIGGRSYCVFSSDDGKAKVPFPATLSFITRNGATKTYDAGCDDSWRDMTDALWLTTPWTD ISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN >gi|223713553|gb|ACDM01000045.1| GENE 44 46275 - 46985 473 236 aa, chain + ## HITS:1 COG:no KEGG:JW5030 NR:ns ## KEGG: JW5030 # Name: yagV # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 236 1 236 236 472 99.0 1e-132 MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRI AISAIDSPGSSELRTRPVDVELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFRE VPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLI KPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD >gi|223713553|gb|ACDM01000045.1| GENE 45 47842 - 48456 304 204 aa, chain - ## HITS:1 COG:ECs0317 KEGG:ns NR:ns ## COG: ECs0317 COG3477 # Protein_GI_number: 15829571 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Escherichia coli O157:H7 # 1 204 1 204 204 408 100.0 1e-114 MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRA AGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVV AEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIE IIRRDLRNRITHEPDPEIPLGSNR >gi|223713553|gb|ACDM01000045.1| GENE 46 48874 - 49563 450 229 aa, chain + ## HITS:1 COG:yagT KEGG:ns NR:ns ## COG: yagT COG2080 # Protein_GI_number: 16128271 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Escherichia coli K12 # 1 229 1 229 229 431 100.0 1e-121 MSNQGEYPEDNRVGKHEPHDLSLTRRDLIKVSAATAATAVVYPHSTLAASVPAATPAPEI MPLTLKVNGKTEQLEVDTRTTLLDTLRENLHLIGTKKGCDHGQCGACTVLVNGRRLNACL TLAVMHQGAEITTIEGLGSPDNLHPMQAAFIKHDGFQCGYCTSGQICSSVAVLKEIQDGI PSHVTVDLVSAPETTADEIRERMSGNICRCGAYANILAAIEDAAGEIKS >gi|223713553|gb|ACDM01000045.1| GENE 47 49560 - 50516 655 318 aa, chain + ## HITS:1 COG:yagS KEGG:ns NR:ns ## COG: yagS COG1319 # Protein_GI_number: 16128270 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli K12 # 1 318 1 318 318 599 100.0 1e-171 MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIE VTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCP YFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETIT PEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFA LVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKL LLAKRTLASVLAEARAQA >gi|223713553|gb|ACDM01000045.1| GENE 48 50513 - 52711 1670 732 aa, chain + ## HITS:1 COG:yagR KEGG:ns NR:ns ## COG: yagR COG1529 # Protein_GI_number: 16128269 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli K12 # 1 732 1 732 732 1404 100.0 0 MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEEAPNAAYGYIVGSAIAK GRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGGPTIEHYHQAIALVVAETF EQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDKNVGDFDGAFTSAAVKIDATY TTPDQSHMAMEPHASMAVWDGNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPYIGG GFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKIT AISHESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMA LEIAIDELAEKAGIDPVEFRILNDTQVDPADPTRCFSRRQLIECLRTGADKFGWKQRNAT PGQVRDGEWLVGHGVAAGFRNNLLEKSGARVHLEQNGTVTVETDMTDIGTGSYTILAQTA AEMLGVPLEQVAVHLGDSSFPVSAGSGGQWGANTSTSGVYAACMKLREMIASAVGFDPEQ SQFADGKITNGTRSATLHEATAGGRLTAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATG EVRVRRMLAVCAAGRILNPKTARSQVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYE VPVHADIPKQEVIFLDDTDPISSPMKAKGVGELGLCGVSAAIANAVYNATGIRVRDYPIT LDKLLDKLPDVV >gi|223713553|gb|ACDM01000045.1| GENE 49 52721 - 53677 507 318 aa, chain + ## HITS:1 COG:yagQ KEGG:ns NR:ns ## COG: yagQ COG1975 # Protein_GI_number: 16128268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 1 318 1 318 318 613 100.0 1e-175 MSYPLFDKDEHWHKPEQAFLTDDHRTILRFAVEALMSGKGAVLVTLVEIRGGAARPLGAQ MVVREDGRYCGFVSGGCVEAAAAFEALEMMGSGRDREIRYGEGSPWFDIVLPCGGGITLT LHKLRSAQPLLAVLNRLEQRKPVGLRYDPQAQSLVCLPTQTRTGWNLNGFEVGFRPCVRL MIYGRSLEAQATASLAAATGYDSHIFDLFPASASAQIDTDTAVILLCHDLNRELPVLQAA REAKPFYLGALGSYRTHTLRLQKLHELGWSREETTQIRAPVGIFPKARDAHTLALSVLAE VASVRLHQEEDSCLPPSS >gi|223713553|gb|ACDM01000045.1| GENE 50 53656 - 54066 309 136 aa, chain + ## HITS:1 COG:yagP KEGG:ns NR:ns ## COG: yagP COG0583 # Protein_GI_number: 16128267 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 136 1 136 136 251 99.0 2e-67 MPAPVVLILAAGRGERFLASGGNTHKCIGWRQSPEVAPYRWPFEENGRTFDLAIEPQITT NDLRLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPK LRALIDYVKEWRQQLA >gi|223713553|gb|ACDM01000045.1| GENE 51 54501 - 54686 76 61 aa, chain + ## HITS:1 COG:Z0322 KEGG:ns NR:ns ## COG: Z0322 COG2801 # Protein_GI_number: 15799963 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 61 61 121 121 113 95.0 7e-26 MAERLVKTMKEDYIAFMPKPNIRTALHNLAVAIEHYNENHPHSALGYRSPREYRRQRVTL T Prediction of potential genes in microbial genomes Time: Mon May 16 19:04:03 2011 Seq name: gi|223713552|gb|ACDM01000046.1| Escherichia sp. 4_1_40B cont1.46, whole genome shotgun sequence Length of sequence - 976 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 309 - 353 6.2 1 1 Tu 1 . - CDS 356 - 910 396 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|223713552|gb|ACDM01000046.1| GENE 1 356 - 910 396 184 aa, chain - ## HITS:1 COG:ECs0284 KEGG:ns NR:ns ## COG: ECs0284 COG1961 # Protein_GI_number: 15829538 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli O157:H7 # 1 184 1 184 184 356 97.0 2e-98 MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVV WKLDRLGRSMRHLVILVEELRERGVNFRSLTDAIDTSTPMGRFFFHVMGALAEMERELIV ERTKAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIASGVPRQKVAIIYDVGISTLYKKFP VGDK Prediction of potential genes in microbial genomes Time: Mon May 16 19:04:04 2011 Seq name: gi|223713551|gb|ACDM01000047.1| Escherichia sp. 4_1_40B cont1.47, whole genome shotgun sequence Length of sequence - 2052 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 289 239 ## JW1140 hypothetical protein 2 1 Op 2 . - CDS 293 - 736 438 ## ECO103_0525 hypothetical protein 3 1 Op 3 . - CDS 756 - 1145 370 ## COG4570 Holliday junction resolvase 4 1 Op 4 . - CDS 1142 - 1369 218 ## ECIAI39_4864 putative LexA repressor - Term 1411 - 1454 -0.9 5 1 Op 5 . - CDS 1468 - 1956 180 ## ECS88_2902 conserved hypothetical protein; CPS-53 (KpLE1) prophage Predicted protein(s) >gi|223713551|gb|ACDM01000047.1| GENE 1 1 - 289 239 96 aa, chain - ## HITS:1 COG:no KEGG:JW1140 NR:ns ## KEGG: JW1140 # Name: ycfK # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 96 1 96 209 172 98.0 2e-42 MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEK GRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALEN >gi|223713551|gb|ACDM01000047.1| GENE 2 293 - 736 438 147 aa, chain - ## HITS:1 COG:no KEGG:ECO103_0525 NR:ns ## KEGG: ECO103_0525 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 137 1 137 269 282 100.0 3e-75 MNNLMVIDGIEVRRDAYGRYSLNDLHRAAVASGANARTKEPGKFLSSQQTVELVHELTNT QNLGVDPVSVIHGGNERGTYVCKELVYAYAMWISPSFHLKVIRTFDMVTSAPEKLSGQAA DKMQAGVILLDFMRRELPEPRQALYPE >gi|223713551|gb|ACDM01000047.1| GENE 3 756 - 1145 370 129 aa, chain - ## HITS:1 COG:ECs2751 KEGG:ns NR:ns ## COG: ECs2751 COG4570 # Protein_GI_number: 15832005 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1 122 3 117 119 87 40.0 8e-18 MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAIVEQLRRLPKPTSAPAS VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK YEKTAGAAA >gi|223713551|gb|ACDM01000047.1| GENE 4 1142 - 1369 218 75 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_4864 NR:ns ## KEGG: ECIAI39_4864 # Name: not_defined # Def: putative LexA repressor # Organism: E.coli_IAI39 # Pathway: not_defined # 1 75 34 108 108 136 98.0 2e-31 MLGYRSVNAAVEHLRALEKKGVITIKRGVARGITLHTAVKDDDSEAVGIIRALLAGEENA RLRATHWLHERGLKV >gi|223713551|gb|ACDM01000047.1| GENE 5 1468 - 1956 180 162 aa, chain - ## HITS:1 COG:no KEGG:ECS88_2902 NR:ns ## KEGG: ECS88_2902 # Name: yfdN # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.coli_S88 # Pathway: not_defined # 1 162 3 164 164 280 95.0 2e-74 MSLLNEVQKYIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFP RLTERAQEAEPQPVRETRPVRNFYVGTNDPREILCLTRQAEELESRGLYRRAATVWMAAF RESHSQPERNNFLARREQCLRKSSKRAVSSDEWYLSGNYVGA Prediction of potential genes in microbial genomes Time: Mon May 16 19:04:15 2011 Seq name: gi|223713550|gb|ACDM01000048.1| Escherichia sp. 4_1_40B cont1.48, whole genome shotgun sequence Length of sequence - 6053 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 592 154 ## SeSA_A4446 phage O protein family 2 1 Op 2 . - CDS 582 - 761 131 ## gi|193066827|ref|ZP_03047826.1| conserved hypothetical protein - Term 778 - 819 5.1 3 2 Op 1 . - CDS 937 - 1488 311 ## EFER_0584 putative nucleic acid-binding protein; E14 prophage 4 2 Op 2 . - CDS 1526 - 1726 157 ## SeSA_A4444 hypothetical protein - Prom 1774 - 1833 3.4 5 3 Tu 1 . + CDS 1824 - 2450 57 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 2472 - 2509 3.1 + Prom 2480 - 2539 5.8 6 4 Tu 1 . + CDS 2698 - 2904 227 ## EFER_0580 conserved hypothetical protein from phage origin + Term 2986 - 3022 1.3 - Term 2757 - 2794 3.0 7 5 Tu 1 . - CDS 2876 - 3310 156 ## EFER_0579 hypothetical protein from phage origin - Prom 3335 - 3394 2.5 + Prom 3582 - 3641 1.8 8 6 Op 1 . + CDS 3779 - 4141 464 ## EFER_0577 hypothetical protein 9 6 Op 2 . + CDS 4207 - 5031 819 ## COG5532 Uncharacterized conserved protein + Term 5048 - 5073 -0.5 10 7 Op 1 . + CDS 5159 - 5695 384 ## COG1896 Predicted hydrolases of HD superfamily 11 7 Op 2 . + CDS 5686 - 6048 209 ## EFER_0574 conserved hypothetical protein; CPS-53 (KpLE1) prophage Predicted protein(s) >gi|223713550|gb|ACDM01000048.1| GENE 1 1 - 592 154 197 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A4446 NR:ns ## KEGG: SeSA_A4446 # Name: not_defined # Def: phage O protein family # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 197 1 187 313 324 94.0 9e-88 MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTA IARLEAEGWLTRKARRQGNRNASNVYQLNVAKLQAAAFSQLSDSDPSKSDASKSDPSKSD ASKSDPSKFDASKSGKKAGFHPSESGGDPSVKSKHDPSDKKTSRPDASQPDTQTAEQEFL TRHPDAVVFSPKKRQWG >gi|223713550|gb|ACDM01000048.1| GENE 2 582 - 761 131 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|193066827|ref|ZP_03047826.1| ## NR: gi|193066827|ref|ZP_03047826.1| conserved hypothetical protein [Escherichia coli E22] # 1 59 1 59 59 97 100.0 2e-19 MRQVNRWFKDHYGVPVRVIRWEPETQRVIYLREGYEHECFSPLEQFRRKFREIEVGHEH >gi|223713550|gb|ACDM01000048.1| GENE 3 937 - 1488 311 183 aa, chain - ## HITS:1 COG:no KEGG:EFER_0584 NR:ns ## KEGG: EFER_0584 # Name: ymfL # Def: putative nucleic acid-binding protein; E14 prophage # Organism: E.fergusonii # Pathway: not_defined # 1 183 36 218 218 369 98.0 1e-101 MGKHHWKVEKQPEWYVKAVRKTIAALPGGYAEAADWLDVTENALFNRLRADGDQIFPLGW AMILQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSA IEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISESNDARECAAPGAVACRDCGE TNA >gi|223713550|gb|ACDM01000048.1| GENE 4 1526 - 1726 157 66 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A4444 NR:ns ## KEGG: SeSA_A4444 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 66 1 66 66 131 100.0 9e-30 MTTDDIESYFGSIEKVAAFFGITTEAVYQWRNRPGQLIPKGRAAEAAYRTCGRLPFKPEL YEKSNG >gi|223713550|gb|ACDM01000048.1| GENE 5 1824 - 2450 57 208 aa, chain + ## HITS:1 COG:ECs2766 KEGG:ns NR:ns ## COG: ECs2766 COG1974 # Protein_GI_number: 15832020 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 208 2 215 215 158 41.0 7e-39 METVGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSID YILYGAEFEGKLVTNMRRVPVISWVQAGQFTECRAAEVFSEVDKWVDTSLKIGDNSFALE VKGDSMTNPNGLPTIPEGATVIVDPDAEPRHGKIVIARLDGTNEATVKKLVIDGPQKFLV PLNPRYPNIPINGNCLIIGVVKGVQYEL >gi|223713550|gb|ACDM01000048.1| GENE 6 2698 - 2904 227 68 aa, chain + ## HITS:1 COG:no KEGG:EFER_0580 NR:ns ## KEGG: EFER_0580 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.fergusonii # Pathway: not_defined # 1 68 6 73 73 115 100.0 4e-25 MHKTEPKIVAPGYTNEEIYEWMAKKLAAINQLREVLSYRQETIDSLKKLDQEITVLSQDV TLDIVQTN >gi|223713550|gb|ACDM01000048.1| GENE 7 2876 - 3310 156 144 aa, chain - ## HITS:1 COG:no KEGG:EFER_0579 NR:ns ## KEGG: EFER_0579 # Name: not_defined # Def: hypothetical protein from phage origin # Organism: E.fergusonii # Pathway: not_defined # 1 144 1 144 144 258 99.0 3e-68 MSGNIYTLYKSHCENVGKYRGIEISGVVSSVEISKVESRATLLTLLDLVLHEHRKKFGTP YNQLNGKKALVHLILMKHHWMPKQINEMKFDELLLSIQDEFTLDKISVTAQKFLDYRDWR SQIHHFDDFDENEWDPNLSAQYLK >gi|223713550|gb|ACDM01000048.1| GENE 8 3779 - 4141 464 120 aa, chain + ## HITS:1 COG:no KEGG:EFER_0577 NR:ns ## KEGG: EFER_0577 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 120 107 226 226 234 99.0 9e-61 MASERSTDVHAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRVK IKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGR >gi|223713550|gb|ACDM01000048.1| GENE 9 4207 - 5031 819 274 aa, chain + ## HITS:1 COG:yfdQ KEGG:ns NR:ns ## COG: yfdQ COG5532 # Protein_GI_number: 16130292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 274 1 274 274 500 99.0 1e-141 MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALS TASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFS ALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAVRKITIEANQTADFED NDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQ LEAVQEEMANEFRDLLVEKFKDSKVETFIGTFTA >gi|223713550|gb|ACDM01000048.1| GENE 10 5159 - 5695 384 178 aa, chain + ## HITS:1 COG:yfdR KEGG:ns NR:ns ## COG: yfdR COG1896 # Protein_GI_number: 16130293 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli K12 # 1 178 10 187 187 366 98.0 1e-101 MSFIKTFSGKHFYYDRINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ EFAFEALMHDATEAYCQDIPAPLKRLLPDYKQMEEKIDAVIREKYGLPPVMSTPVKYADL IMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNELSELRKCA >gi|223713550|gb|ACDM01000048.1| GENE 11 5686 - 6048 209 120 aa, chain + ## HITS:1 COG:no KEGG:EFER_0574 NR:ns ## KEGG: EFER_0574 # Name: yfdS # Def: conserved hypothetical protein; CPS-53 (KpLE1) prophage # Organism: E.fergusonii # Pathway: not_defined # 1 120 1 120 120 233 100.0 2e-60 MRMNVFEMEGFLRGRCVPRDLKVNETDAEYLVRKFDALEAKCAAQENKVIPVSTELPPAN ESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA Prediction of potential genes in microbial genomes Time: Mon May 16 19:04:43 2011 Seq name: gi|223713549|gb|ACDM01000049.1| Escherichia sp. 4_1_40B cont1.49, whole genome shotgun sequence Length of sequence - 24251 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 17, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 593 - 652 2.0 1 1 Tu 1 . + CDS 680 - 1348 -15 ## COG0582 Integrase - TRNA 1363 - 1438 91.5 # Thr CGT 0 0 2 2 Op 1 22/0.000 - CDS 1553 - 2806 1401 ## COG0014 Gamma-glutamyl phosphate reductase 3 2 Op 2 . - CDS 2818 - 3921 1079 ## COG0263 Glutamate 5-kinase - Prom 4073 - 4132 8.4 + Prom 4066 - 4125 5.8 4 3 Tu 1 . + CDS 4209 - 5264 1069 ## COG3203 Outer membrane protein (porin) + Term 5272 - 5306 6.0 - Term 5260 - 5294 5.2 5 4 Op 1 . - CDS 5303 - 5704 586 ## SSON_0282 DNA-binding transcriptional regulator Crl 6 4 Op 2 6/0.111 - CDS 5762 - 7006 1261 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 7032 - 7091 3.4 - Term 7053 - 7091 9.1 7 5 Tu 1 . - CDS 7098 - 7556 615 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 7616 - 7675 3.2 + Prom 7666 - 7725 3.6 8 6 Tu 1 . + CDS 7817 - 9274 1845 ## COG2195 Di- and tripeptidases + Term 9287 - 9330 8.3 - Term 9046 - 9089 2.4 9 7 Op 1 5/0.222 - CDS 9331 - 9831 254 ## COG1186 Protein chain release factor B 10 7 Op 2 2/1.000 - CDS 9800 - 10066 134 ## COG1690 Uncharacterized conserved protein - Prom 10193 - 10252 9.0 11 8 Op 1 . - CDS 10372 - 10746 226 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 12 8 Op 2 . - CDS 10834 - 11232 344 ## JW0223 predicted toxin of the YafO-YafN toxin-antitoxin system 13 8 Op 3 3/0.667 - CDS 11235 - 11528 203 ## COG2161 Antitoxin of toxin-antitoxin stability system 14 8 Op 4 2/1.000 - CDS 11580 - 12635 1085 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 15 8 Op 5 . - CDS 12706 - 13476 766 ## COG1360 Flagellar motor protein + Prom 13327 - 13386 1.8 16 9 Tu 1 . + CDS 13436 - 15175 1834 ## COG1298 Flagellar biosynthesis pathway, component FlhA - Term 15306 - 15347 1.0 17 10 Op 1 3/0.667 - CDS 15399 - 15896 115 ## COG1943 Transposase and inactivated derivatives - Prom 15991 - 16050 2.0 18 10 Op 2 . - CDS 16072 - 16881 212 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 16901 - 16960 8.3 + Prom 16941 - 17000 7.8 19 11 Op 1 9/0.000 + CDS 17031 - 17291 395 ## COG3077 DNA-damage-inducible protein J 20 11 Op 2 3/0.667 + CDS 17294 - 17572 107 ## COG3041 Uncharacterized protein conserved in bacteria + Prom 17588 - 17647 3.0 21 12 Tu 1 . + CDS 17728 - 18468 866 ## COG3034 Uncharacterized protein conserved in bacteria + Term 18479 - 18512 2.1 - Term 18338 - 18394 6.0 22 13 Tu 1 6/0.111 - CDS 18439 - 19206 582 ## COG0121 Predicted glutamine amidotransferase - Prom 19320 - 19379 2.5 - Term 19325 - 19389 3.8 23 14 Tu 1 . - CDS 19412 - 19990 792 ## COG0279 Phosphoheptose isomerase - Prom 20022 - 20081 4.2 + Prom 20084 - 20143 3.2 24 15 Tu 1 . + CDS 20230 - 22674 3133 ## COG1960 Acyl-CoA dehydrogenases + Term 22683 - 22713 3.0 - Term 22670 - 22700 3.0 25 16 Tu 1 . - CDS 22717 - 23190 577 ## EC55989_0244 C-lysozyme inhibitor - Prom 23233 - 23292 3.9 + Prom 23224 - 23283 6.7 26 17 Tu 1 . + CDS 23344 - 24114 652 ## COG0388 Predicted amidohydrolase + Term 24186 - 24221 -0.7 Predicted protein(s) >gi|223713549|gb|ACDM01000049.1| GENE 1 680 - 1348 -15 222 aa, chain + ## HITS:1 COG:ECs0271 KEGG:ns NR:ns ## COG: ECs0271 COG0582 # Protein_GI_number: 15829525 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1 222 103 324 324 435 99.0 1e-122 MLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQ QIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHHWVFVYKESCTKPDGTKA PTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEM VRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSKNKEGTNDV >gi|223713549|gb|ACDM01000049.1| GENE 2 1553 - 2806 1401 417 aa, chain - ## HITS:1 COG:ECs0270 KEGG:ns NR:ns ## COG: ECs0270 COG0014 # Protein_GI_number: 15829524 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Escherichia coli O157:H7 # 1 417 1 417 417 775 98.0 0 MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSE AMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYE ARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPD RALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALK VIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAK VVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVD SSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA >gi|223713549|gb|ACDM01000049.1| GENE 3 2818 - 3921 1079 367 aa, chain - ## HITS:1 COG:ECs0269 KEGG:ns NR:ns ## COG: ECs0269 COG0263 # Protein_GI_number: 15829523 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Escherichia coli O157:H7 # 1 367 1 367 367 692 100.0 0 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG VIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGI KSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVH RDDMITR >gi|223713549|gb|ACDM01000049.1| GENE 4 4209 - 5264 1069 351 aa, chain + ## HITS:1 COG:phoE KEGG:ns NR:ns ## COG: phoE COG3203 # Protein_GI_number: 16128227 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 351 1 351 351 625 100.0 1e-179 MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFG FKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALY DVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRD VKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDAN NIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDE DLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF >gi|223713549|gb|ACDM01000049.1| GENE 5 5303 - 5704 586 133 aa, chain - ## HITS:1 COG:no KEGG:SSON_0282 NR:ns ## KEGG: SSON_0282 # Name: crl # Def: DNA-binding transcriptional regulator Crl # Organism: S.sonnei # Pathway: not_defined # 1 133 1 133 133 266 100.0 2e-70 MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP ADDFRDEPVKLTA >gi|223713549|gb|ACDM01000049.1| GENE 6 5762 - 7006 1261 414 aa, chain - ## HITS:1 COG:yafA KEGG:ns NR:ns ## COG: yafA COG1073 # Protein_GI_number: 16128225 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1 414 1 414 414 870 100.0 0 MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRG IDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEDDPQL SGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAP ITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWK LTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVV HTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLS GYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC >gi|223713549|gb|ACDM01000049.1| GENE 7 7098 - 7556 615 152 aa, chain - ## HITS:1 COG:ECs0265 KEGG:ns NR:ns ## COG: ECs0265 COG0503 # Protein_GI_number: 15829519 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Escherichia coli O157:H7 # 1 152 1 152 152 306 100.0 8e-84 MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCI SSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRP LVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR >gi|223713549|gb|ACDM01000049.1| GENE 8 7817 - 9274 1845 485 aa, chain + ## HITS:1 COG:pepD KEGG:ns NR:ns ## COG: pepD COG2195 # Protein_GI_number: 16128223 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli K12 # 1 485 1 485 485 988 100.0 0 MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKP ATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGM ASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQGNWLQADILINTDSEEEGEIYMGC AGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE ELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDVLKSLVNTYQEILKNELAEKEKNLAL LLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEI HCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFN KTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLK EIPAK >gi|223713549|gb|ACDM01000049.1| GENE 9 9331 - 9831 254 166 aa, chain - ## HITS:1 COG:prfH KEGG:ns NR:ns ## COG: prfH COG1186 # Protein_GI_number: 16128222 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli K12 # 1 166 1 166 166 315 100.0 3e-86 MLETETGRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRF TADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLAR LLIAWKLEQQQQENSAALKSQRRMFHHQIERGNPRRTFTGMAFIEG >gi|223713549|gb|ACDM01000049.1| GENE 10 9800 - 10066 134 88 aa, chain - ## HITS:1 COG:ykfJ KEGG:ns NR:ns ## COG: ykfJ COG1690 # Protein_GI_number: 16128221 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 88 1 88 88 177 100.0 5e-45 MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPI GAAFFSVGRFYPARRRGNGAGNRNGPLL >gi|223713549|gb|ACDM01000049.1| GENE 11 10372 - 10746 226 124 aa, chain - ## HITS:1 COG:yafP KEGG:ns NR:ns ## COG: yafP COG0454 # Protein_GI_number: 16128220 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1 124 27 150 150 243 100.0 9e-65 MTASQHYSPQQISAWAQIDESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPE YTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRY KPQH >gi|223713549|gb|ACDM01000049.1| GENE 12 10834 - 11232 344 132 aa, chain - ## HITS:1 COG:no KEGG:JW0223 NR:ns ## KEGG: JW0223 # Name: yafO # Def: predicted toxin of the YafO-YafN toxin-antitoxin system # Organism: E.coli_J # Pathway: not_defined # 1 132 1 132 132 266 100.0 2e-70 MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAH IHLANENNPFPPQLRQFSRTNDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHK IGKMAEAFRMRF >gi|223713549|gb|ACDM01000049.1| GENE 13 11235 - 11528 203 97 aa, chain - ## HITS:1 COG:yafN KEGG:ns NR:ns ## COG: yafN COG2161 # Protein_GI_number: 16128218 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Escherichia coli K12 # 1 97 1 97 97 166 100.0 7e-42 MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKK PIKARFRPSAARLEEITRRAEQYLNDMTDDDFNDFKE >gi|223713549|gb|ACDM01000049.1| GENE 14 11580 - 12635 1085 351 aa, chain - ## HITS:1 COG:dinP KEGG:ns NR:ns ## COG: dinP COG0389 # Protein_GI_number: 16128217 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1 351 1 351 351 714 100.0 0 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL >gi|223713549|gb|ACDM01000049.1| GENE 15 12706 - 13476 766 256 aa, chain - ## HITS:1 COG:mbhA KEGG:ns NR:ns ## COG: mbhA COG1360 # Protein_GI_number: 16128216 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Escherichia coli K12 # 1 256 6 261 261 476 99.0 1e-134 MIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVN EKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGS AKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEE AGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQP LVQKLDKQQVLSQRTR >gi|223713549|gb|ACDM01000049.1| GENE 16 13436 - 15175 1834 579 aa, chain + ## HITS:1 COG:fhiA KEGG:ns NR:ns ## COG: fhiA COG1298 # Protein_GI_number: 16128215 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli K12 # 1 579 1 579 579 1099 100.0 0 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM >gi|223713549|gb|ACDM01000049.1| GENE 17 15399 - 15896 115 165 aa, chain - ## HITS:1 COG:yafM KEGG:ns NR:ns ## COG: yafM COG1943 # Protein_GI_number: 16128214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 165 1 165 165 325 100.0 2e-89 MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHM HCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINP VKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS >gi|223713549|gb|ACDM01000049.1| GENE 18 16072 - 16881 212 269 aa, chain - ## HITS:1 COG:yafL KEGG:ns NR:ns ## COG: yafL COG0791 # Protein_GI_number: 16128213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Escherichia coli K12 # 21 269 1 249 249 502 100.0 1e-142 MFRNDPGYTATLKHDQPLLSMSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQ RMQNRARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRW QALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILE AKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGE TIRISRLAEPFWQDHFLGARRILTEETIL >gi|223713549|gb|ACDM01000049.1| GENE 19 17031 - 17291 395 86 aa, chain + ## HITS:1 COG:dinJ KEGG:ns NR:ns ## COG: dinJ COG3077 # Protein_GI_number: 16128212 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Escherichia coli K12 # 1 86 1 86 86 144 100.0 3e-35 MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQ SIKNSEAGIDVHKAKDADDLFDKLGI >gi|223713549|gb|ACDM01000049.1| GENE 20 17294 - 17572 107 92 aa, chain + ## HITS:1 COG:yafQ KEGG:ns NR:ns ## COG: yafQ COG3041 # Protein_GI_number: 16128211 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 92 1 92 92 180 100.0 5e-46 MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYR DAHVEPDWILIYKLTDKLLRFERTGTHAALFG >gi|223713549|gb|ACDM01000049.1| GENE 21 17728 - 18468 866 246 aa, chain + ## HITS:1 COG:ECs0251 KEGG:ns NR:ns ## COG: ECs0251 COG3034 # Protein_GI_number: 15829505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 491 100.0 1e-139 MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVK MGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNA YDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTD ANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNY TLPEAK >gi|223713549|gb|ACDM01000049.1| GENE 22 18439 - 19206 582 255 aa, chain - ## HITS:1 COG:yafJ KEGG:ns NR:ns ## COG: yafJ COG0121 # Protein_GI_number: 16128209 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Escherichia coli K12 # 1 255 1 255 255 548 100.0 1e-156 MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPI AKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETG NFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGR YVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKI MPGEWRLFCLGERVV >gi|223713549|gb|ACDM01000049.1| GENE 23 19412 - 19990 792 192 aa, chain - ## HITS:1 COG:ECs0249 KEGG:ns NR:ns ## COG: ECs0249 COG0279 # Protein_GI_number: 15829503 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Escherichia coli O157:H7 # 1 192 1 192 192 373 100.0 1e-103 MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAM HFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGIST SGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIH ILIQLIEKEMVK >gi|223713549|gb|ACDM01000049.1| GENE 24 20230 - 22674 3133 814 aa, chain + ## HITS:1 COG:yafH KEGG:ns NR:ns ## COG: yafH COG1960 # Protein_GI_number: 16128207 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli K12 # 1 814 13 826 826 1674 100.0 0 MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNF APMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRL TAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSA YAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFAL TSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEK LLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAG QGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARI AGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQS NFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLF KHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGS LKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLL QNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHN PVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAE ESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA >gi|223713549|gb|ACDM01000049.1| GENE 25 22717 - 23190 577 157 aa, chain - ## HITS:1 COG:no KEGG:EC55989_0244 NR:ns ## KEGG: EC55989_0244 # Name: ivy # Def: C-lysozyme inhibitor # Organism: E.coli_55989 # Pathway: not_defined # 1 157 1 157 157 292 100.0 2e-78 MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWV MKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQE KLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK >gi|223713549|gb|ACDM01000049.1| GENE 26 23344 - 24114 652 256 aa, chain + ## HITS:1 COG:yafV KEGG:ns NR:ns ## COG: yafV COG0388 # Protein_GI_number: 16128205 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli K12 # 1 256 1 256 256 529 100.0 1e-150 MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQD DVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHY KAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTAR AIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY REKFPAWQDADEFRLW Prediction of potential genes in microbial genomes Time: Mon May 16 19:04:58 2011 Seq name: gi|223713548|gb|ACDM01000050.1| Escherichia sp. 4_1_40B cont1.50, whole genome shotgun sequence Length of sequence - 18653 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 681 - 4760 1763 ## COG3209 Rhs family protein 3 2 Op 1 5/0.571 + CDS 4802 - 6085 1220 ## COG3523 Uncharacterized protein conserved in bacteria 4 2 Op 2 2/0.857 + CDS 6096 - 7448 1283 ## COG3515 Uncharacterized protein conserved in bacteria 5 2 Op 3 . + CDS 7472 - 7954 360 ## COG3157 Hemolysin-coregulated protein (uncharacterized) 6 2 Op 4 . + CDS 7998 - 8912 160 ## ECO103_0212 hypothetical protein 7 2 Op 5 . + CDS 8922 - 9401 -42 ## BWG_0204 hypothetical protein + Term 9448 - 9485 -0.1 - Term 9271 - 9334 1.9 8 3 Tu 1 . - CDS 9538 - 10323 587 ## JW0206 predicted aminopeptidase - Prom 10396 - 10455 8.0 - TRNA 10651 - 10727 90.7 # Asp GTC 0 0 - Term 10577 - 10627 9.1 9 4 Tu 1 . - CDS 10860 - 11600 731 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 11636 - 11695 4.3 + Prom 11574 - 11633 2.1 10 5 Tu 1 . + CDS 11656 - 12123 484 ## COG0328 Ribonuclease HI + Term 12134 - 12188 6.0 11 6 Tu 1 . - CDS 12120 - 12842 447 ## COG0500 SAM-dependent methyltransferases - Prom 12873 - 12932 3.8 + Prom 12651 - 12710 2.7 12 7 Op 1 8/0.429 + CDS 12876 - 13631 370 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Prom 13670 - 13729 1.5 13 7 Op 2 . + CDS 13841 - 15061 690 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 15069 - 15127 7.4 - Term 15061 - 15107 8.2 14 8 Op 1 4/0.714 - CDS 15109 - 15732 287 ## COG0500 SAM-dependent methyltransferases 15 8 Op 2 . - CDS 15736 - 16515 462 ## COG3021 Uncharacterized protein conserved in bacteria - Prom 16595 - 16654 5.7 + Prom 16677 - 16736 4.1 16 9 Tu 1 . + CDS 16777 - 17691 559 ## COG0583 Transcriptional regulator + Term 17727 - 17769 7.1 - Term 17646 - 17679 3.8 17 10 Tu 1 . - CDS 17688 - 18491 1112 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 18589 - 18648 3.1 Predicted protein(s) >gi|223713548|gb|ACDM01000050.1| GENE 1 311 - 703 214 130 aa, chain - ## HITS:1 COG:no KEGG:ECB_00212 NR:ns ## KEGG: ECB_00212 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 13 130 6 123 123 234 99.0 6e-61 MNVLRHVNAINMGVCILIWVIGCANAKVLKRCILPAPDGGVEKLSKPNLHGVIKKVDLNT NEAEIKIKEGGAVSFIFNEETLYFTVFGGDFIMDDLKKVKNTEAWVWYKNCDSKNKNVAV ELLQIYELHQ >gi|223713548|gb|ACDM01000050.1| GENE 2 681 - 4760 1763 1359 aa, chain - ## HITS:1 COG:Z0268 KEGG:ns NR:ns ## COG: Z0268 COG3209 # Protein_GI_number: 15799917 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 EDL933 # 1 1223 49 1270 1404 2187 92.0 0 MNPVLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRD EGLILNDSGGRSIHFEPLFPGEISYSRSESFWLARGGVATQHSSQPLSALWQVLPEDVRL SPHAYLAANSLQGPWWILSWPERVPEVDEVLPPEPPAYRVLTGVVDGFGRTLAFHREAAG ELAGEITRVTDGAGRRFHLALSTQAQRAEAFRKQRESSLSSPAGPRSVSSSSSAFPDTLP AGTEYGADNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTASGELRAVYDRSGTQVRGFTY DAEHAGRMVAHHYAGRPESRYRYDDTGRVTEQVNPEGLDYRFEYGERRVIITDSLNRREV LYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTG PDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAETSRSGETTSYSYDDPASELP TGIEDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDWYGQQIAVHREEGISTYSSYNPR GQLVSQKDAQGRETRYEYSTAGDLTAIIAPDGSRSETQYDAWGKAISTTQGGLTRSMGYD AAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWH YDASDRITRRTVNGEPAEQWQYDDHGWLTEISHLSEGHRVAVHYGYDDKGRLTGERQTVE NPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRD RLHRETARSFGGEAYELATAWNTSGQLRSRHLNLPQLDRDYDWNDNGQLIRISGPQESRE YRYSDTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYV YRHDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDP LGRRTGKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTIQTGTTRIQTVYQPGSFTPL LRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRAGAVSAESEAWLAQ CGLTAEQMAAQMEDAYIPERRLHLYHCDHRGLPQALITPEGETAWCGEYDEWGNQLNEEN PHHLYQPYRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGINLYTYPLVPIRY TDPLGLERVISVYGPPAPDRAGAETPLVLTDMTGGVTIYYDPETGDSMTFDSSNRIDRRS QRGAGDPYTGEVVGCETNESGISAAYGTTKIYTTDTRARWLHGGGSSLRDPYAPRQGWKP TMGCTRAQNEDVDELCKKVTSWMYSHPGERIRYERFKTR >gi|223713548|gb|ACDM01000050.1| GENE 3 4802 - 6085 1220 427 aa, chain + ## HITS:1 COG:Z0250 KEGG:ns NR:ns ## COG: Z0250 COG3523 # Protein_GI_number: 15799899 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 427 718 1144 1144 853 99.0 0 MKYSDADRAEIQRQLTEQYISDYTATWRAGMDNLNIRNFESIGQLTGALEQVISGDQPLQ RALTVLRDNTQPGVFSEKLSAKEREEALAEPDYQLLTRLGHEFAPENSTLAVQKDKESTM QAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRW VGRLTDQAWHVVMVEAVHYMEVDWRDSVVKPFNEQLANNYPFNPRSAQDASLDAFERFFK PDGILDTFYQQNLKLFIDNDLSLEDGDNNVIIREDIIAQLETAQKIRDIFFSKQNGLGTS FAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGTSGNAP RSISFSGPWAQFRLFGAGQLTGVQDGNFTVRFSVDGGAMTYRVHTDTEDNPFSGGLFSQF GLSDTLY >gi|223713548|gb|ACDM01000050.1| GENE 4 6096 - 7448 1283 450 aa, chain + ## HITS:1 COG:Z0249 KEGG:ns NR:ns ## COG: Z0249 COG3515 # Protein_GI_number: 15799898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 440 31 470 499 814 99.0 0 MNSNVLTQTIVTGSDPRWLPEFSAIREEINKASHPSQPELNWKLVESLALAIFKANGVDL HTATYYTLARTRTQGLAGFCEGAELLAAMVSHDWDKFWPQGGPARTEMLDWFNSRTGNIL RQQISFAESDLPLIYRTERALQLICDKLQQVELKRVPRVENLLYFMQNTRKRLEPQLKSN TENAAQTTVRTLIYAPETQASSTPEAVVPPLPGLPEMKVEVRSLTENPPQASVIKQGSTV RGFIAGIACSVAVASALWWWQVYPVQQQLLQVNDTAQGAATVWMASPELENYERRLQQLL DTSPVQPLETGMQMMRVADSRWPESLQQQQASTQWNEALKTRAQSSPQLRGWLQTRQDLH AFADLVMQREKEGLTLSYIKNVIWQAERGLGQETPVESLLTQYHDARAQKQNTDALEKQI NERLEGVLSRWLLLKNNVMPEAATGTTAEK >gi|223713548|gb|ACDM01000050.1| GENE 5 7472 - 7954 360 160 aa, chain + ## HITS:1 COG:ECs0216 KEGG:ns NR:ns ## COG: ECs0216 COG3157 # Protein_GI_number: 15829470 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1 159 1 158 159 182 54.0 2e-46 MANISYLSLSGETQGLISAGCSTLDSVGNKAQPEHKDQIMVYALMHSISRSQNVNHHELI ITKPVDKSSPLLAKALSDNEKMAICEFILYRTSKAGIYQPYYKINLSKARISSIDFVTPH AVLEKELEPQERIAFIYEDISWEHTLAGTNAMSKWQDRVQ >gi|223713548|gb|ACDM01000050.1| GENE 6 7998 - 8912 160 304 aa, chain + ## HITS:1 COG:no KEGG:ECO103_0212 NR:ns ## KEGG: ECO103_0212 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 304 1 304 304 629 99.0 1e-179 MAGLRNNNNTQNAQWADYVGDILRGAQPINQLVPQHPYLNDVPLIDELRHQNTHHVIPLT LDVAKKILSPITSFDYIHFITTHPSGIKDTLAWLVNAGKLMTEFDDNGKIIFNLNALKYT KASYFEILGEKYIKITTSSPWLLEKLGKYIFSSRAPQVLELAIGWRGTLSESIKGVKFCI WFSVAWRTIEFIMSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVIL VGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNT PPVI >gi|223713548|gb|ACDM01000050.1| GENE 7 8922 - 9401 -42 159 aa, chain + ## HITS:1 COG:no KEGG:BWG_0204 NR:ns ## KEGG: BWG_0204 # Name: ykfM # Def: hypothetical protein # Organism: E.coli_BW2952 # Pathway: not_defined # 1 159 1 159 159 275 100.0 3e-73 MRLHVKLKEFLSMFFMAILFFPAFNASLFFTGVKPLYSIIKCSTEIFYDWRMLILCFGFM SFSFLNIHVILLTIIKSFLIKKTKVVNFATDITIQLTLIFLLIAIVIAPLIAPFVTGYVN TNYHPCGNNTGIFPGAIYIKNGMKCNNGYISRKEDSAVK >gi|223713548|gb|ACDM01000050.1| GENE 8 9538 - 10323 587 261 aa, chain - ## HITS:1 COG:no KEGG:JW0206 NR:ns ## KEGG: JW0206 # Name: yafT # Def: predicted aminopeptidase # Organism: E.coli_J # Pathway: not_defined # 1 261 1 261 261 492 100.0 1e-138 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ IMQLKQKTYKAMVKDLVNRYQ >gi|223713548|gb|ACDM01000050.1| GENE 9 10860 - 11600 731 246 aa, chain - ## HITS:1 COG:dnaQ KEGG:ns NR:ns ## COG: dnaQ COG0847 # Protein_GI_number: 16128202 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 4 246 1 243 243 487 100.0 1e-137 MTAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRL VDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRD IPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLA MTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGG SCLWRA >gi|223713548|gb|ACDM01000050.1| GENE 10 11656 - 12123 484 155 aa, chain + ## HITS:1 COG:ECs0210 KEGG:ns NR:ns ## COG: ECs0210 COG0328 # Protein_GI_number: 15829464 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Escherichia coli O157:H7 # 1 155 1 155 155 314 100.0 5e-86 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV >gi|223713548|gb|ACDM01000050.1| GENE 11 12120 - 12842 447 240 aa, chain - ## HITS:1 COG:yafS KEGG:ns NR:ns ## COG: yafS COG0500 # Protein_GI_number: 16128200 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 240 7 246 246 487 100.0 1e-138 MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEAC AVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDD GWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLP WNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA >gi|223713548|gb|ACDM01000050.1| GENE 12 12876 - 13631 370 251 aa, chain + ## HITS:1 COG:ECs0208 KEGG:ns NR:ns ## COG: ECs0208 COG0491 # Protein_GI_number: 15829462 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Escherichia coli O157:H7 # 1 251 1 251 251 520 100.0 1e-147 MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVG GVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYFSK PYLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALPDDTLVCCAHEYTLSNMKFALSILP HDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLRTEDIDLINVINEETLLQQPEER FAWLRSKKDRF >gi|223713548|gb|ACDM01000050.1| GENE 13 13841 - 15061 690 406 aa, chain + ## HITS:1 COG:dniR KEGG:ns NR:ns ## COG: dniR COG0741 # Protein_GI_number: 16128198 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1 406 47 452 452 775 100.0 0 MDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYMYWIA GQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDV VASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLPLPQE TKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISVSKLK TFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVR SGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQRLANNSDSITYRVRK GDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMPDS >gi|223713548|gb|ACDM01000050.1| GENE 14 15109 - 15732 287 207 aa, chain - ## HITS:1 COG:yafE KEGG:ns NR:ns ## COG: yafE COG0500 # Protein_GI_number: 16128197 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 207 1 207 207 407 100.0 1e-114 MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADN AFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALRDT SHVRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVARMRTPEALVDAIRIYQQSAST EVRTYFALQNDGFFTSDIIMVDAHKAA >gi|223713548|gb|ACDM01000050.1| GENE 15 15736 - 16515 462 259 aa, chain - ## HITS:1 COG:ECs0205 KEGG:ns NR:ns ## COG: ECs0205 COG3021 # Protein_GI_number: 15829459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 259 8 266 266 512 100.0 1e-145 MRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYG KDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLRER EPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM AGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVT RASDHNPLLVEFSPGKPDK >gi|223713548|gb|ACDM01000050.1| GENE 16 16777 - 17691 559 304 aa, chain + ## HITS:1 COG:yafC KEGG:ns NR:ns ## COG: yafC COG0583 # Protein_GI_number: 16128195 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 304 1 304 304 577 100.0 1e-164 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP EVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPE TIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLS DYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPGGA VREA >gi|223713548|gb|ACDM01000050.1| GENE 17 17688 - 18491 1112 267 aa, chain - ## HITS:1 COG:yafB KEGG:ns NR:ns ## COG: yafB COG0656 # Protein_GI_number: 16128194 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Escherichia coli K12 # 1 267 1 267 267 512 100.0 1e-145 MAIPAFGLGTFRLKDDVVISSVITALELGYRAIDTAQIYDNEAAVGQAIAESGVPRHELY ITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQ GLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQNRKVVAWAKQHGIHITSYMT LAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTKRKNLESNLKAQNLQLD AEDKKAIAALDCNDRLVSPEGLAPEWD Prediction of potential genes in microbial genomes Time: Mon May 16 19:05:21 2011 Seq name: gi|223713547|gb|ACDM01000051.1| Escherichia sp. 4_1_40B cont1.51, whole genome shotgun sequence Length of sequence - 31265 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 11, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 2 - 77 88.7 # Thr GGT 0 0 + 5S_RRNA 116 - 237 100.0 # AE006468 [R:3566622..3566743] # 5S ribosomal RNA # Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhimurium. - Term 405 - 436 4.1 1 1 Op 1 34/0.000 - CDS 463 - 1221 532 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 6/0.500 - CDS 1229 - 2332 854 ## COG0765 ABC-type amino acid transport system, permease component 3 1 Op 3 6/0.500 - CDS 2342 - 3523 891 ## COG4597 ABC-type amino acid transport system, permease component - Term 3533 - 3583 6.1 4 1 Op 4 . - CDS 3591 - 4616 1016 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 4861 - 4920 5.4 - Term 5007 - 5039 4.1 5 2 Tu 1 . - CDS 5047 - 5268 283 ## ECH74115_4585 putative lipoprotein - Prom 5445 - 5504 4.7 - Term 5475 - 5510 3.5 6 3 Op 1 27/0.000 - CDS 5521 - 8625 2983 ## COG0841 Cation/multidrug efflux pump 7 3 Op 2 . - CDS 8637 - 9794 883 ## COG0845 Membrane-fusion protein - Prom 10039 - 10098 7.3 + Prom 10011 - 10070 6.9 8 4 Tu 1 . + CDS 10193 - 10855 431 ## COG1309 Transcriptional regulator + Term 10889 - 10930 2.3 - Term 10808 - 10844 0.1 9 5 Op 1 . - CDS 10858 - 11037 136 ## EcE24377A_3748 hypothetical protein - Prom 11057 - 11116 1.9 10 5 Op 2 1/1.000 - CDS 11121 - 12005 730 ## COG0863 DNA modification methylase - Term 12024 - 12061 1.4 11 6 Op 1 12/0.500 - CDS 12091 - 12387 374 ## COG2901 Factor for inversion stimulation Fis, transcriptional activator 12 6 Op 2 7/0.500 - CDS 12413 - 13378 1101 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Prom 13526 - 13585 5.5 - Term 13599 - 13653 11.8 13 7 Op 1 3/1.000 - CDS 13707 - 14588 1543 ## PROTEIN SUPPORTED gi|15833385|ref|NP_312158.1| ribosomal protein L11 methyltransferase 14 7 Op 2 4/1.000 - CDS 14600 - 16051 1650 ## COG4145 Na+/panthothenate symporter 15 7 Op 3 6/0.500 - CDS 16041 - 16283 255 ## COG3924 Predicted membrane protein - Prom 16308 - 16367 5.4 - Term 16344 - 16372 3.0 16 8 Op 1 27/0.000 - CDS 16392 - 17741 1528 ## COG0439 Biotin carboxylase 17 8 Op 2 . - CDS 17752 - 18222 485 ## COG0511 Biotin carboxyl carrier protein 18 9 Op 1 . - CDS 18999 - 19163 78 ## EcolC_0453 hypothetical protein 19 9 Op 2 . - CDS 19200 - 20174 1171 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 20212 - 20271 3.4 + Prom 20175 - 20234 3.7 20 10 Tu 1 . + CDS 20326 - 22266 1225 ## COG2200 FOG: EAL domain + Prom 22472 - 22531 4.9 21 11 Op 1 22/0.000 + CDS 22571 - 23614 1159 ## COG1077 Actin-like ATPase involved in cell morphogenesis 22 11 Op 2 19/0.000 + CDS 23680 - 24783 1126 ## COG1792 Cell shape-determining protein 23 11 Op 3 7/0.500 + CDS 24783 - 25271 409 ## COG2891 Cell shape-determining protein 24 11 Op 4 8/0.500 + CDS 25280 - 25873 600 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 25 11 Op 5 5/1.000 + CDS 25863 - 27332 1546 ## COG1530 Ribonucleases G and E 26 11 Op 6 . + CDS 27400 - 31200 3230 ## COG3164 Predicted membrane protein Predicted protein(s) >gi|223713547|gb|ACDM01000051.1| GENE 1 463 - 1221 532 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 12 250 1 242 245 209 45 2e-53 MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINH LEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMP KKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDP EMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKS ERTRAFLSQVIH >gi|223713547|gb|ACDM01000051.1| GENE 2 1229 - 2332 854 367 aa, chain - ## HITS:1 COG:yhdY KEGG:ns NR:ns ## COG: yhdY COG0765 # Protein_GI_number: 16131158 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 367 2 368 368 681 100.0 0 MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP HRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILL ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRF NTGRTPH >gi|223713547|gb|ACDM01000051.1| GENE 3 2342 - 3523 891 393 aa, chain - ## HITS:1 COG:ECs4142 KEGG:ns NR:ns ## COG: ECs4142 COG4597 # Protein_GI_number: 15833396 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1 393 7 399 399 698 99.0 0 MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLD RGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLL RKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGD GFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALH WDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGL PNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAI ETIAMTMSVYLIISLTISLLMNIYNRRIAIVER >gi|223713547|gb|ACDM01000051.1| GENE 4 3591 - 4616 1016 341 aa, chain - ## HITS:1 COG:yhdW KEGG:ns NR:ns ## COG: yhdW COG0834 # Protein_GI_number: 16131156 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 37 341 1 305 305 621 99.0 1e-178 MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI DVDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR >gi|223713547|gb|ACDM01000051.1| GENE 5 5047 - 5268 283 73 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_4585 NR:ns ## KEGG: ECH74115_4585 # Name: not_defined # Def: putative lipoprotein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 73 1 73 73 115 100.0 6e-25 MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAA VAGLTMGIIALSK >gi|223713547|gb|ACDM01000051.1| GENE 6 5521 - 8625 2983 1034 aa, chain - ## HITS:1 COG:acrF KEGG:ns NR:ns ## COG: acrF COG0841 # Protein_GI_number: 16131154 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1034 1 1034 1034 1957 100.0 0 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF VPVFFVVIRRCFKG >gi|223713547|gb|ACDM01000051.1| GENE 7 8637 - 9794 883 385 aa, chain - ## HITS:1 COG:acrE KEGG:ns NR:ns ## COG: acrE COG0845 # Protein_GI_number: 16131153 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 385 1 385 385 674 100.0 0 MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTN AYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAI AHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPIS GRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT SNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV QPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIV SGLQKARPGEQVKATTDTPADTASK >gi|223713547|gb|ACDM01000051.1| GENE 8 10193 - 10855 431 220 aa, chain + ## HITS:1 COG:ECs4136 KEGG:ns NR:ns ## COG: ECs4136 COG1309 # Protein_GI_number: 15833390 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 220 1 220 220 426 100.0 1e-119 MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN EMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFN DEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWLMN MAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM >gi|223713547|gb|ACDM01000051.1| GENE 9 10858 - 11037 136 59 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_3748 NR:ns ## KEGG: EcE24377A_3748 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 59 10 68 68 87 100.0 2e-16 MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM >gi|223713547|gb|ACDM01000051.1| GENE 10 11121 - 12005 730 294 aa, chain - ## HITS:1 COG:yhdJ KEGG:ns NR:ns ## COG: yhdJ COG0863 # Protein_GI_number: 16131150 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli K12 # 1 294 3 296 296 611 100.0 1e-175 MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDL FIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAK KHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVW DFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFI GIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK >gi|223713547|gb|ACDM01000051.1| GENE 11 12091 - 12387 374 98 aa, chain - ## HITS:1 COG:ECs4133 KEGG:ns NR:ns ## COG: ECs4133 COG2901 # Protein_GI_number: 15833387 # Func_class: K Transcription; L Replication, recombination and repair # Function: Factor for inversion stimulation Fis, transcriptional activator # Organism: Escherichia coli O157:H7 # 1 98 1 98 98 162 100.0 1e-40 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN >gi|223713547|gb|ACDM01000051.1| GENE 12 12413 - 13378 1101 321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 317 28 344 353 428 65 1e-119 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH IDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDV VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY LDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTF NAIEDASEQLEALEAYFENFA >gi|223713547|gb|ACDM01000051.1| GENE 13 13707 - 14588 1543 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15833385|ref|NP_312158.1| ribosomal protein L11 methyltransferase [Escherichia coli O157:H7 str. Sakai] # 1 293 1 293 293 598 100 1e-170 MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLF DAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRD VPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLG AAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELA PLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN >gi|223713547|gb|ACDM01000051.1| GENE 14 14600 - 16051 1650 483 aa, chain - ## HITS:1 COG:ECs4130 KEGG:ns NR:ns ## COG: ECs4130 COG4145 # Protein_GI_number: 15833384 # Func_class: H Coenzyme transport and metabolism # Function: Na+/panthothenate symporter # Organism: Escherichia coli O157:H7 # 1 483 3 485 485 797 100.0 0 MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMGGIVLAMTLTATYISAS SFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILARRYNAVTLNDMLFARYQS RLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYETGLLIFGISIALYTAFGGFRA SVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVQTLQTIDPQLVTPQGADDILSPAFMT SFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFGMHLAGALGRAVIPD LTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMSTINAQLLQSSATIIKDLYLNIRPDQM QNETRLKRMSAVITLVLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWERA NAKGALSAMIVGGVLYAVLATLNIQYLGFHPIVPSLLLSLLAFLVGNRFGTSVPQATVLT TDK >gi|223713547|gb|ACDM01000051.1| GENE 15 16041 - 16283 255 80 aa, chain - ## HITS:1 COG:yhdT KEGG:ns NR:ns ## COG: yhdT COG3924 # Protein_GI_number: 16131145 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 80 1 80 80 149 100.0 2e-36 MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGL CWAMVKFIYRDIPLEDDDAA >gi|223713547|gb|ACDM01000051.1| GENE 16 16392 - 17741 1528 449 aa, chain - ## HITS:1 COG:ECs4128 KEGG:ns NR:ns ## COG: ECs4128 COG0439 # Protein_GI_number: 15833382 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Escherichia coli O157:H7 # 1 449 1 449 449 882 99.0 0 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVT EMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAP GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL QIRIMNDENFQHGGTNIHYLEKKLGLQEK >gi|223713547|gb|ACDM01000051.1| GENE 17 17752 - 18222 485 156 aa, chain - ## HITS:1 COG:ECs4127 KEGG:ns NR:ns ## COG: ECs4127 COG0511 # Protein_GI_number: 15833381 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 246 100.0 2e-65 MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPMMQQPAQSN AAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA MKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE >gi|223713547|gb|ACDM01000051.1| GENE 18 18999 - 19163 78 54 aa, chain - ## HITS:1 COG:no KEGG:EcolC_0453 NR:ns ## KEGG: EcolC_0453 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 48 1 48 276 103 97.0 2e-21 MKSLFNRLTGKAVSRTAFVEHLGQEVIQHHPNWKVMISTDHKLMRIDTPLNSYY >gi|223713547|gb|ACDM01000051.1| GENE 19 19200 - 20174 1171 324 aa, chain - ## HITS:1 COG:ECs4125 KEGG:ns NR:ns ## COG: ECs4125 COG0604 # Protein_GI_number: 15833379 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Escherichia coli O157:H7 # 1 324 1 324 324 638 99.0 0 MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMI PGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARK AMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR ESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAAC GLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEISL SEAPNFAEAIINNQIQGRTLVKVN >gi|223713547|gb|ACDM01000051.1| GENE 20 20326 - 22266 1225 646 aa, chain + ## HITS:1 COG:ECs4124_3 KEGG:ns NR:ns ## COG: ECs4124_3 COG2200 # Protein_GI_number: 15833378 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 # 395 646 1 252 252 499 100.0 1e-141 MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSV LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLR LVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGER GSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDN QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGAL LARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQV YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV >gi|223713547|gb|ACDM01000051.1| GENE 21 22571 - 23614 1159 347 aa, chain + ## HITS:1 COG:ECs4123 KEGG:ns NR:ns ## COG: ECs4123 COG1077 # Protein_GI_number: 15833377 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Escherichia coli O157:H7 # 1 347 21 367 367 649 100.0 0 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE >gi|223713547|gb|ACDM01000051.1| GENE 22 23680 - 24783 1126 367 aa, chain + ## HITS:1 COG:ECs4122 KEGG:ns NR:ns ## COG: ECs4122 COG1792 # Protein_GI_number: 15833376 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Escherichia coli O157:H7 # 1 367 1 367 367 592 99.0 1e-169 MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDTAVSPFYFVSNAPRELL DGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMV TQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHA LPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSS VKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNGANPMTPEEVHRVANERLMQMMPQV LPSPDAMGPKLPEPATGIAQPTPQQPATGNAATAPAAPTQPAANRSPQRATPPQSGAQPP ARAPGGQ >gi|223713547|gb|ACDM01000051.1| GENE 23 24783 - 25271 409 162 aa, chain + ## HITS:1 COG:ECs4121 KEGG:ns NR:ns ## COG: ECs4121 COG2891 # Protein_GI_number: 15833375 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 227 100.0 6e-60 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ >gi|223713547|gb|ACDM01000051.1| GENE 24 25280 - 25873 600 197 aa, chain + ## HITS:1 COG:yhdE KEGG:ns NR:ns ## COG: yhdE COG0424 # Protein_GI_number: 16131136 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli K12 # 1 197 1 197 197 375 100.0 1e-104 MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQT AKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLV VTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYE LLSNFNALREKRDKHDG >gi|223713547|gb|ACDM01000051.1| GENE 25 25863 - 27332 1546 489 aa, chain + ## HITS:1 COG:ZcafA KEGG:ns NR:ns ## COG: ZcafA COG1530 # Protein_GI_number: 15803780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Escherichia coli O157:H7 EDL933 # 1 489 7 495 495 917 100.0 0 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN QEQFDVVMM >gi|223713547|gb|ACDM01000051.1| GENE 26 27400 - 31200 3230 1266 aa, chain + ## HITS:1 COG:yhdR+P KEGG:ns NR:ns ## COG: yhdR+P COG3164 # Protein_GI_number: 16132254 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 1266 1 1266 1266 2518 100.0 0 MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKIESATGMPVEASQLSAS WQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMRWQFRDLTFWQLRFRTNTP ITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSGQRAELAIPQLTWLNDPRRHR AEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQADDIDLKPWLGKWMQDNIALET AQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQTHTLSVDNLTAHITRENPGWQFSIP DTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLS PALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSG SVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNNNKGFQLDGRNIDVKAKAVHA RGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMGKDLVDYLSGAIQGGEADNAT LVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGV NLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGD VNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSTLKNLSGKFSFINSDLQSEPLTAS WFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLP YHAGATYNIELNGDLKNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFN SRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAA SFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIK YLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISG DTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSS FNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRF DFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVA PEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQP RKEKAQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:06:08 2011 Seq name: gi|223713546|gb|ACDM01000052.1| Escherichia sp. 4_1_40B cont1.52, whole genome shotgun sequence Length of sequence - 114455 bp Number of predicted genes - 114, with homology - 114 Number of transcription units - 55, operones - 27 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 77 - 1522 1790 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs - Term 1437 - 1486 -0.5 2 2 Tu 1 . - CDS 1656 - 2585 842 ## COG0583 Transcriptional regulator - Prom 2626 - 2685 7.2 + Prom 2602 - 2661 5.5 3 3 Op 1 . + CDS 2768 - 2971 112 ## G2583_3962 hypothetical protein 4 3 Op 2 6/0.154 + CDS 2979 - 3911 1016 ## COG1566 Multidrug resistance efflux pump 5 3 Op 3 4/0.538 + CDS 3917 - 5884 1375 ## COG1289 Predicted membrane protein + Term 5892 - 5924 3.0 6 4 Tu 1 . + CDS 5976 - 6248 373 ## COG2732 Barstar, RNAse (barnase) inhibitor - Term 6246 - 6276 4.1 7 5 Tu 1 . - CDS 6304 - 6567 349 ## G2583_3958 hypothetical protein - Prom 6697 - 6756 7.5 - Term 6888 - 6927 4.7 8 6 Tu 1 . - CDS 6932 - 7402 550 ## COG1438 Arginine repressor - Prom 7428 - 7487 5.2 + Prom 7574 - 7633 4.3 9 7 Tu 1 . + CDS 7837 - 8775 1320 ## COG0039 Malate/lactate dehydrogenases + Term 8791 - 8834 8.6 - Term 8786 - 8815 1.2 10 8 Op 1 6/0.154 - CDS 8838 - 9905 1188 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 9932 - 9991 4.0 11 8 Op 2 5/0.308 - CDS 9995 - 11362 1470 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 11407 - 11466 4.2 - Term 11473 - 11505 3.8 12 9 Tu 1 . - CDS 11516 - 11914 537 ## COG3105 Uncharacterized protein conserved in bacteria - Prom 12028 - 12087 3.3 + Prom 12159 - 12218 2.2 13 10 Tu 1 . + CDS 12264 - 13235 792 ## COG1485 Predicted ATPase + Term 13258 - 13290 3.1 + Prom 13238 - 13297 5.6 14 11 Op 1 59/0.000 + CDS 13379 - 13882 881 ## PROTEIN SUPPORTED gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13 15 11 Op 2 . + CDS 13898 - 14290 650 ## PROTEIN SUPPORTED gi|15803764|ref|NP_289798.1| 30S ribosomal protein S9 + Term 14329 - 14354 -0.5 - Term 14374 - 14426 4.8 16 12 Tu 1 . - CDS 14534 - 14743 72 ## ECP_3312 hypothetical protein 17 13 Op 1 13/0.000 + CDS 14685 - 15323 663 ## PROTEIN SUPPORTED gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase 18 13 Op 2 . + CDS 15329 - 15826 514 ## COG2969 Stringent starvation protein B + Term 15829 - 15868 8.0 - Term 15815 - 15855 8.2 19 14 Tu 1 . - CDS 15869 - 17236 1361 ## COG3069 C4-dicarboxylate transporter - Prom 17339 - 17398 5.7 + Prom 17393 - 17452 8.8 20 15 Tu 1 . + CDS 17616 - 18407 917 ## COG2186 Transcriptional regulators + Prom 18435 - 18494 3.7 21 16 Tu 1 . + CDS 18529 - 19422 943 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Prom 19427 - 19486 2.9 22 17 Op 1 1/0.962 + CDS 19531 - 21021 1683 ## COG0477 Permeases of the major facilitator superfamily + Term 21029 - 21060 2.4 23 17 Op 2 5/0.308 + CDS 21069 - 21758 835 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase 24 17 Op 3 3/0.885 + CDS 21755 - 22630 314 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 25 17 Op 4 . + CDS 22627 - 23091 411 ## COG2731 Beta-galactosidase, beta subunit - Term 23101 - 23133 4.9 26 18 Tu 1 . - CDS 23151 - 24278 542 ## PROTEIN SUPPORTED gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 - Prom 24375 - 24434 1.8 27 19 Op 1 . - CDS 24463 - 25179 307 ## JW3188 predicted transcriptional regulator 28 19 Op 2 . - CDS 25176 - 25721 270 ## gi|256024208|ref|ZP_05438073.1| hypothetical protein E4_12593 29 19 Op 3 10/0.115 - CDS 25718 - 28099 1109 ## COG3188 P pilus assembly protein, porin PapC 30 19 Op 4 . - CDS 28120 - 28794 378 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 28905 - 28964 4.2 - Term 28871 - 28912 4.0 31 20 Tu 1 . - CDS 28966 - 29730 556 ## JW3181 periplasmic protein - Prom 29757 - 29816 13.2 - Term 30183 - 30216 -0.6 32 21 Op 1 21/0.000 - CDS 30290 - 31708 1692 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 33 21 Op 2 . - CDS 31721 - 36181 4616 ## COG0069 Glutamate synthase domain 2 - Prom 36351 - 36410 1.9 34 22 Op 1 4/0.538 + CDS 36880 - 37785 934 ## COG1242 Predicted Fe-S oxidoreductase + Term 37787 - 37830 -0.6 + Prom 37798 - 37857 3.4 35 22 Op 2 2/0.923 + CDS 37881 - 40217 2781 ## COG0642 Signal transduction histidine kinase + Prom 40334 - 40393 3.7 36 23 Op 1 3/0.885 + CDS 40447 - 41100 810 ## COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis 37 23 Op 2 . + CDS 41118 - 41825 510 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 42019 - 42059 3.7 38 24 Tu 1 . - CDS 41822 - 42454 512 ## B21_03023 hypothetical protein - Prom 42565 - 42624 2.6 39 25 Op 1 7/0.154 - CDS 42668 - 42940 260 ## COG1925 Phosphotransferase system, HPr-related proteins 40 25 Op 2 8/0.115 - CDS 42937 - 43791 864 ## COG1660 Predicted P-loop-containing kinase 41 25 Op 3 11/0.077 - CDS 43837 - 44328 359 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Term 44381 - 44417 6.4 42 26 Op 1 11/0.077 - CDS 44446 - 44733 458 ## PROTEIN SUPPORTED gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930 43 26 Op 2 17/0.000 - CDS 44756 - 46189 1467 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 44 26 Op 3 19/0.000 - CDS 46237 - 46962 287 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 45 26 Op 4 12/0.038 - CDS 46969 - 47526 582 ## COG1934 Uncharacterized protein conserved in bacteria 46 26 Op 5 11/0.077 - CDS 47495 - 48070 394 ## COG3117 Uncharacterized protein conserved in bacteria 47 26 Op 6 13/0.000 - CDS 48067 - 48633 738 ## COG1778 Low specificity phosphatase (HAD superfamily) 48 26 Op 7 6/0.154 - CDS 48654 - 49640 951 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 49 26 Op 8 . - CDS 49654 - 50631 698 ## COG0530 Ca2+/Na+ antiporter - Prom 50694 - 50753 5.5 + Prom 50714 - 50773 4.4 50 27 Op 1 23/0.000 + CDS 50841 - 51650 637 ## COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component 51 27 Op 2 16/0.000 + CDS 51658 - 52440 802 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 52 27 Op 3 13/0.000 + CDS 52445 - 52996 653 ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component 53 27 Op 4 10/0.115 + CDS 53015 - 53650 878 ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component 54 27 Op 5 6/0.154 + CDS 53650 - 53943 344 ## COG3113 Predicted NTP binding protein (contains STAS domain) + Term 53994 - 54046 6.0 + Prom 53983 - 54042 1.6 55 28 Op 1 11/0.077 + CDS 54088 - 54357 321 ## COG5007 Predicted transcriptional regulator, BolA superfamily 56 28 Op 2 . + CDS 54412 - 55671 1444 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Term 55661 - 55715 7.2 57 29 Op 1 . - CDS 55719 - 55997 298 ## COG3423 Predicted transcriptional regulator - Prom 56108 - 56167 3.0 58 29 Op 2 . - CDS 56225 - 57196 1072 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 57270 - 57329 3.2 + Prom 57330 - 57389 3.6 59 30 Op 1 32/0.000 + CDS 57431 - 57766 562 ## PROTEIN SUPPORTED gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21 60 30 Op 2 6/0.154 + CDS 57787 - 58044 437 ## PROTEIN SUPPORTED gi|15803725|ref|NP_289759.1| 50S ribosomal protein L27 + Term 58073 - 58106 6.1 + Prom 58069 - 58128 3.6 61 31 Op 1 6/0.154 + CDS 58171 - 59136 751 ## PROTEIN SUPPORTED gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 62 31 Op 2 . + CDS 59152 - 60324 1473 ## COG0536 Predicted GTPase + Term 60476 - 60514 9.2 - Term 60462 - 60502 4.9 63 32 Tu 1 . - CDS 60510 - 61829 932 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) - Prom 62046 - 62105 3.2 + Prom 61985 - 62044 5.7 64 33 Tu 1 . + CDS 62191 - 62667 603 ## COG0782 Transcription elongation factor + Term 62716 - 62742 1.7 - Term 62698 - 62737 7.4 65 34 Tu 1 . - CDS 62823 - 63116 454 ## PROTEIN SUPPORTED gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein - Prom 63284 - 63343 3.0 + Prom 63105 - 63164 4.2 66 35 Op 1 13/0.000 + CDS 63242 - 63871 610 ## COG0293 23S rRNA methylase + Prom 63873 - 63932 4.2 67 35 Op 2 7/0.154 + CDS 63962 - 65905 1683 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 65936 - 65977 9.5 68 36 Op 1 9/0.115 + CDS 65995 - 66843 836 ## COG0294 Dihydropteroate synthase and related enzymes 69 36 Op 2 7/0.154 + CDS 66836 - 68173 1604 ## COG1109 Phosphomannomutase + Term 68197 - 68224 -0.1 + Prom 68214 - 68273 4.0 70 37 Tu 1 . + CDS 68401 - 68733 400 ## COG1314 Preprotein translocase subunit SecG + Term 68842 - 68884 9.2 + TRNA 68748 - 68834 70.3 # Leu GAG 0 0 + Prom 69192 - 69251 7.3 71 38 Tu 1 . + CDS 69293 - 70918 396 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase - Term 70877 - 70918 5.7 72 39 Tu 1 . - CDS 70926 - 72269 1700 ## COG0137 Argininosuccinate synthase - Prom 72329 - 72388 3.8 + TRNA 72617 - 72693 86.1 # Met CAT 0 0 73 40 Op 1 32/0.000 + CDS 72930 - 73352 393 ## COG0779 Uncharacterized protein conserved in bacteria 74 40 Op 2 20/0.000 + CDS 73380 - 74867 1026 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 75 40 Op 3 32/0.000 + CDS 74892 - 77564 3171 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) + Term 77592 - 77650 1.2 + Prom 77632 - 77691 2.3 76 40 Op 4 26/0.000 + CDS 77728 - 78129 632 ## COG0858 Ribosome-binding factor A 77 40 Op 5 14/0.000 + CDS 78129 - 79073 1085 ## COG0130 Pseudouridine synthase + Term 79166 - 79204 -0.8 + Prom 79086 - 79145 4.1 78 40 Op 6 26/0.000 + CDS 79222 - 79491 445 ## PROTEIN SUPPORTED gi|16131057|ref|NP_417634.1| 30S ribosomal subunit protein S15 + Term 79513 - 79541 1.3 79 40 Op 7 6/0.154 + CDS 79738 - 81873 188 ## PROTEIN SUPPORTED gi|229537485|ref|ZP_04426621.1| ribosomal protein S1 + Term 81885 - 81918 5.9 80 41 Tu 1 . + CDS 81982 - 82866 573 ## COG4785 Lipoprotein NlpI, contains TPR repeats + Term 82902 - 82938 1.3 + Prom 82961 - 83020 5.7 81 42 Tu 1 . + CDS 83046 - 84935 2375 ## COG0513 Superfamily II DNA and RNA helicases + Term 84979 - 85013 3.5 + Prom 84943 - 85002 7.9 82 43 Tu 1 . + CDS 85089 - 86333 1641 ## COG0814 Amino acid permeases + Term 86375 - 86409 0.6 - Term 86362 - 86397 0.2 83 44 Op 1 2/0.923 - CDS 86451 - 87458 946 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 84 44 Op 2 13/0.000 - CDS 87539 - 88417 1030 ## COG0826 Collagenase and related proteases 85 44 Op 3 . - CDS 88426 - 89421 855 ## COG0826 Collagenase and related proteases - Prom 89451 - 89510 4.4 + Prom 89530 - 89589 4.4 86 45 Op 1 6/0.154 + CDS 89630 - 90154 691 ## COG3154 Putative lipid carrier protein 87 45 Op 2 . + CDS 90148 - 90651 683 ## COG3153 Predicted acetyltransferase + Term 90703 - 90745 1.1 88 46 Tu 1 . - CDS 90638 - 90940 269 ## COG2827 Predicted endonuclease containing a URI domain - Prom 90965 - 91024 4.2 + Prom 90910 - 90969 3.1 89 47 Tu 1 . + CDS 90991 - 91434 343 ## COG3787 Uncharacterized protein conserved in bacteria + Term 91472 - 91500 1.4 90 48 Tu 1 . - CDS 91414 - 91932 608 ## COG0693 Putative intracellular protease/amidase + Prom 91831 - 91890 2.1 91 49 Op 1 2/0.923 + CDS 92060 - 92695 568 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 92709 - 92761 3.2 92 49 Op 2 . + CDS 92768 - 93808 1264 ## COG0701 Predicted permeases + Term 93971 - 94005 2.0 93 50 Op 1 11/0.077 - CDS 93922 - 94497 630 ## COG2823 Predicted periplasmic or secreted lipoprotein 94 50 Op 2 11/0.077 - CDS 94507 - 95097 473 ## COG0279 Phosphoheptose isomerase 95 50 Op 3 10/0.115 - CDS 95117 - 95512 165 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 96 50 Op 4 . - CDS 95470 - 97506 1958 ## COG3107 Putative lipoprotein - Prom 97694 - 97753 2.7 + Prom 97474 - 97533 6.5 97 51 Tu 1 . + CDS 97571 - 98431 1014 ## COG0313 Predicted methyltransferases + Term 98439 - 98483 8.1 - Term 98344 - 98370 -0.3 98 52 Op 1 6/0.154 - CDS 98474 - 99565 510 ## COG3539 P pilus assembly protein, pilin FimA 99 52 Op 2 . - CDS 99576 - 101018 1029 ## COG3188 P pilus assembly protein, porin PapC - Term 101024 - 101073 -0.8 100 52 Op 3 10/0.115 - CDS 101084 - 102091 487 ## COG3188 P pilus assembly protein, porin PapC 101 52 Op 4 7/0.154 - CDS 102120 - 102815 383 ## COG3121 P pilus assembly protein, chaperone PapD - Term 102846 - 102887 11.3 102 52 Op 5 2/0.923 - CDS 102895 - 103479 511 ## COG3539 P pilus assembly protein, pilin FimA - Prom 103541 - 103600 6.4 - Term 103750 - 103801 7.3 103 53 Op 1 2/0.923 - CDS 103880 - 104581 689 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Term 104592 - 104628 4.7 104 53 Op 2 13/0.000 - CDS 104636 - 105427 887 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 105 53 Op 3 13/0.000 - CDS 105417 - 106220 786 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 106 53 Op 4 3/0.885 - CDS 106259 - 106735 592 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 106771 - 106830 5.8 107 54 Op 1 3/0.885 - CDS 106902 - 107762 918 ## COG0191 Fructose/tagatose bisphosphate aldolase 108 54 Op 2 9/0.115 - CDS 107775 - 108929 939 ## COG2222 Predicted phosphosugar isomerases - Prom 109018 - 109077 6.9 - Term 109226 - 109261 -0.0 109 55 Op 1 3/0.885 - CDS 109280 - 110413 973 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 110 55 Op 2 4/0.538 - CDS 110410 - 110844 569 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 111 55 Op 3 13/0.000 - CDS 110862 - 111740 1089 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 112 55 Op 4 13/0.000 - CDS 111730 - 112509 1045 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 113 55 Op 5 1/0.962 - CDS 112520 - 112993 554 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 114 55 Op 6 . - CDS 113016 - 114296 1325 ## COG4573 Predicted tagatose 6-phosphate kinase - Prom 114380 - 114439 6.0 Predicted protein(s) >gi|223713546|gb|ACDM01000052.1| GENE 1 77 - 1522 1790 481 aa, chain + ## HITS:1 COG:tldD KEGG:ns NR:ns ## COG: tldD COG0312 # Protein_GI_number: 16131134 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Escherichia coli K12 # 1 481 1 481 481 889 100.0 0 MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSY NIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLY TSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVR PLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSA VAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDG TMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPM PRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTK PVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGT A >gi|223713546|gb|ACDM01000052.1| GENE 2 1656 - 2585 842 309 aa, chain - ## HITS:1 COG:ECs4116 KEGG:ns NR:ns ## COG: ECs4116 COG0583 # Protein_GI_number: 15833370 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 309 1 309 309 623 100.0 1e-178 MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTE AGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPG LSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEK PADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVP LMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQ EMHGRGKEK >gi|223713546|gb|ACDM01000052.1| GENE 3 2768 - 2971 112 67 aa, chain + ## HITS:1 COG:no KEGG:G2583_3962 NR:ns ## KEGG: G2583_3962 # Name: aaeX # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 67 24 90 90 103 100.0 3e-21 MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFY LISRLFV >gi|223713546|gb|ACDM01000052.1| GENE 4 2979 - 3911 1016 310 aa, chain + ## HITS:1 COG:yhcQ KEGG:ns NR:ns ## COG: yhcQ COG1566 # Protein_GI_number: 16131131 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 310 1 310 310 580 100.0 1e-165 MKTLIRKFSRTAITVVLVILAFIAIFNAWVYYTESPWTRDARFSADVVAIAPDVSGLITQ VNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQEKRQEAGRRNRLGVQAMS REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGS TAVALVKQNSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTR DDKGMATIDSNLEWVRLAQRVPVRIRLDNQQENIWPAGTTATVVVTGKQDRDESQDSFFR KMAHRLREFG >gi|223713546|gb|ACDM01000052.1| GENE 5 3917 - 5884 1375 655 aa, chain + ## HITS:1 COG:yhcP KEGG:ns NR:ns ## COG: yhcP COG1289 # Protein_GI_number: 16131130 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 655 1 655 655 1279 99.0 0 MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYS GAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIWAGFCTWISSLVRIENSYA WGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAIMADLLFSPRSIKQEVDREL ESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQGMRSNLNMESSRWARANRRLKA INTLSLTLITQSCETYLIQNTRPELITDTFREFFDTPVETAQDVHKQLKRLRRVIAWTGE RETPVTIYSWVAAATRYQLLKRGVISNTKINATEEEILQGEPEVKVESAERHHAMVNFWR TTLSCILGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFIYGTLAALPLGLL YFLVIIPNTQQSMLLLCISLAVLGFFLGIEVQKRRLGSMGALASTINIIVLDNPMTFHFS QFLDSALGQIVGCVLAFTVILLVRDKSRDRTGRVLLNQFVSAAVSAMTTNVARRKENHLP ALYQQLFLLMNKFPGDLPKFRLALTMIIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVIS ARSDDKRRRYFGQLLEELEIYQEKLRIWQAPPQVTEPVNRLAGMLHKYQHALTDS >gi|223713546|gb|ACDM01000052.1| GENE 6 5976 - 6248 373 90 aa, chain + ## HITS:1 COG:ECs4112 KEGG:ns NR:ns ## COG: ECs4112 COG2732 # Protein_GI_number: 15833366 # Func_class: K Transcription # Function: Barstar, RNAse (barnase) inhibitor # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 158 100.0 3e-39 MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLPLEIEFVHLGE KTRRRFGALILLFDEAEEELEGHLRFNVRH >gi|223713546|gb|ACDM01000052.1| GENE 7 6304 - 6567 349 87 aa, chain - ## HITS:1 COG:no KEGG:G2583_3958 NR:ns ## KEGG: G2583_3958 # Name: yhcN # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 87 18 104 104 133 100.0 2e-30 MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSGVASSPMDMREMLNKKA EEKGATAYQITEARSGDTWHATAELYK >gi|223713546|gb|ACDM01000052.1| GENE 8 6932 - 7402 550 156 aa, chain - ## HITS:1 COG:ECs4110 KEGG:ns NR:ns ## COG: ECs4110 COG1438 # Protein_GI_number: 15833364 # Func_class: K Transcription # Function: Arginine repressor # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 293 100.0 6e-80 MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRN AKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEG ILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL >gi|223713546|gb|ACDM01000052.1| GENE 9 7837 - 8775 1320 312 aa, chain + ## HITS:1 COG:ECs4109 KEGG:ns NR:ns ## COG: ECs4109 COG0039 # Protein_GI_number: 15833363 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 312 1 312 312 557 100.0 1e-159 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV TILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVR ALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLK KDIALGEEFVNK >gi|223713546|gb|ACDM01000052.1| GENE 10 8838 - 9905 1188 355 aa, chain - ## HITS:1 COG:ECs4108 KEGG:ns NR:ns ## COG: ECs4108 COG0265 # Protein_GI_number: 15833362 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli O157:H7 # 1 355 1 355 355 645 100.0 0 MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETPASYNLAVRRAAPAVVN VYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVG SDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG LNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQL ATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQV NDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN >gi|223713546|gb|ACDM01000052.1| GENE 11 9995 - 11362 1470 455 aa, chain - ## HITS:1 COG:degQ KEGG:ns NR:ns ## COG: degQ COG0265 # Protein_GI_number: 16131124 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli K12 # 1 455 1 455 455 777 100.0 0 MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEG TASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQ LNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQT ATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV GIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPG SGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT STSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRD RVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR >gi|223713546|gb|ACDM01000052.1| GENE 12 11516 - 11914 537 132 aa, chain - ## HITS:1 COG:STM3347 KEGG:ns NR:ns ## COG: STM3347 COG3105 # Protein_GI_number: 16766642 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 132 3 134 134 229 96.0 9e-61 MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSA ELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEG ASGLLRTGAKRD >gi|223713546|gb|ACDM01000052.1| GENE 13 12264 - 13235 792 323 aa, chain + ## HITS:1 COG:ECs4105 KEGG:ns NR:ns ## COG: ECs4105 COG1485 # Protein_GI_number: 15833359 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli O157:H7 # 1 323 53 375 375 661 100.0 0 MARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRV HEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVA TSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDET RAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALS RLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEF QRCLSRLQEMQSEEYLKREHLAG >gi|223713546|gb|ACDM01000052.1| GENE 14 13379 - 13882 881 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43] # 1 167 1 167 167 343 99 2e-93 MSCEPQQLKTFGCSPTCNYLLGKLLMKTFTAKPETVKRDWYVVDATGKTLGRLATELARR LRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIAR RPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI >gi|223713546|gb|ACDM01000052.1| GENE 15 13898 - 14290 650 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803764|ref|NP_289798.1| 30S ribosomal protein S9 [Escherichia coli O157:H7 EDL933] # 1 130 1 130 130 254 100 1e-66 MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEK LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRK ARRRPQFSKR >gi|223713546|gb|ACDM01000052.1| GENE 16 14534 - 14743 72 69 aa, chain - ## HITS:1 COG:no KEGG:ECP_3312 NR:ns ## KEGG: ECP_3312 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 69 1 69 69 122 98.0 4e-27 MSVGPENSVITERLLAATAMKTSRYSQNFYCYQPPGGQSEVVLPNKERLSLFENQTKNEQ YPTFGQKIG >gi|223713546|gb|ACDM01000052.1| GENE 17 14685 - 15323 663 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase [Haemophilus influenzae R2866] # 1 203 1 203 212 259 62 3e-68 MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVP TLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIING SASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPQLGIEFSGPGA KELKGYMTRVFERDSFLASLTEAEREMRLGRS >gi|223713546|gb|ACDM01000052.1| GENE 18 15329 - 15826 514 165 aa, chain + ## HITS:1 COG:ECs4101 KEGG:ns NR:ns ## COG: ECs4101 COG2969 # Protein_GI_number: 15833355 # Func_class: R General function prediction only # Function: Stringent starvation protein B # Organism: Escherichia coli O157:H7 # 1 133 1 133 165 253 100.0 1e-67 MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAV GNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDE EASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK >gi|223713546|gb|ACDM01000052.1| GENE 19 15869 - 17236 1361 455 aa, chain - ## HITS:1 COG:dcuD KEGG:ns NR:ns ## COG: dcuD COG3069 # Protein_GI_number: 16131117 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli K12 # 1 455 1 455 455 746 100.0 0 MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVD IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSAT YVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIF AAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVP PLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMD DVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALV IAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVT SGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY >gi|223713546|gb|ACDM01000052.1| GENE 20 17616 - 18407 917 263 aa, chain + ## HITS:1 COG:nanR KEGG:ns NR:ns ## COG: nanR COG2186 # Protein_GI_number: 16131116 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 263 1 263 263 496 100.0 1e-140 MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERE LMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIGELSGMAKDFLSHPGG IAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLA EIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRA LQSHLNSVSATWHAFGQTTNKKK >gi|223713546|gb|ACDM01000052.1| GENE 21 18529 - 19422 943 297 aa, chain + ## HITS:1 COG:ECs4098 KEGG:ns NR:ns ## COG: ECs4098 COG0329 # Protein_GI_number: 15833352 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli O157:H7 # 1 297 1 297 297 595 100.0 1e-170 MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSERE QVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCD HYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRRE HPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECN KVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQERG >gi|223713546|gb|ACDM01000052.1| GENE 22 19531 - 21021 1683 496 aa, chain + ## HITS:1 COG:ECs4097 KEGG:ns NR:ns ## COG: ECs4097 COG0477 # Protein_GI_number: 15833351 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 496 11 506 506 919 99.0 0 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASL ISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGM GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIG ILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFC FAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPT YLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFA IGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPI IGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSG AVPFGSAKNDLVKTKS >gi|223713546|gb|ACDM01000052.1| GENE 23 21069 - 21758 835 229 aa, chain + ## HITS:1 COG:nanE KEGG:ns NR:ns ## COG: nanE COG3010 # Protein_GI_number: 16131113 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Escherichia coli K12 # 1 229 1 229 229 402 100.0 1e-112 MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQAGAVAIRIEGVANLQA TRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADIIAIDGTDRPRPVPVETLLA RIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTPETPEEPDLALVKTLSDAGCR VIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQWYNTAMKKAVL >gi|223713546|gb|ACDM01000052.1| GENE 24 21755 - 22630 314 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 6 287 8 314 323 125 30 9e-28 MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVA IASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGD ITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASG RGIAAAAQGELAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDCQCVVVG GSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGEKL >gi|223713546|gb|ACDM01000052.1| GENE 25 22627 - 23091 411 154 aa, chain + ## HITS:1 COG:yhcH KEGG:ns NR:ns ## COG: yhcH COG2731 # Protein_GI_number: 16131111 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 154 1 154 154 285 100.0 3e-77 MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDNIFMNVMTFNTQSPVEK KAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQLCSTIDNEQAIILKPGMF AVFMPGEPHKPGCVVGEPGEIKKVVVKVKADLMA >gi|223713546|gb|ACDM01000052.1| GENE 26 23151 - 24278 542 375 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 [Haemophilus parasuis 29755] # 19 372 12 338 339 213 35 3e-54 MESLSEGTTAGYQQIHDGIIHLVDSARTETVRSVNALMTATYQEIGRRIVEFEQGGEARA AYGAQLIKRLSKDLCLRYKRGFSAKNLRQMRLFYLFFQHVEIRQTMSGELTPLGIPQTPS AEFPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYEKETLRCGWSVRQLERQIATQ FYERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLEFLELKDEYSESDFEEALINHLM DFMLELGDDFAFVGRQRRLRIDDNWFRVDLLFFHRRLRCLLIVDLKVGKFSYSDAGQMNM YLNYAKEHWTLPDENPPIGLVLCAEKGAGEAHYALAGLPNTVLASEYKMQLPDEKRLADE LVRTQAVLEEGYRRR >gi|223713546|gb|ACDM01000052.1| GENE 27 24463 - 25179 307 238 aa, chain - ## HITS:1 COG:no KEGG:JW3188 NR:ns ## KEGG: JW3188 # Name: yhcF # Def: predicted transcriptional regulator # Organism: E.coli_J # Pathway: not_defined # 1 238 1 238 238 410 100.0 1e-113 MNNVKLLIAGSAFFAMSAQAADRVSIDVKVTLEAAACTPILSNGGVVNFGSHSVNRLSTQ HYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSGGQSGVKYTLNGGGYISQTT RLFGLGKTKDNKNIGSYAVLIDSNNISASNGSQTLAVSIAGADAVITGQKRAWQTLTAYP LAVDQSYYYTFVKPGETTPTPVTNAIIPLQVSASIANDLGGSEKIELDGKAVISVVYL >gi|223713546|gb|ACDM01000052.1| GENE 28 25176 - 25721 270 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256024208|ref|ZP_05438073.1| ## NR: gi|256024208|ref|ZP_05438073.1| hypothetical protein E4_12593 [Escherichia sp. 4_1_40B] # 1 181 1 181 181 320 100.0 3e-86 MKRIITGCLLLNFAMAAQAECNISSSIQNIDYGKRSAAMRQVDRGKTTQLADRTITLVMQ CDQDAHIRVQLNTANISNNGFGFGPNGSLNLIASDAFSGSNNLDLALASGKNDNPGSTGT ASISTSPNNWLVFMQNGQEVVIDSGKSVSLTLTMAPAFKDEGELTDMTDITGNLTVLVEA K >gi|223713546|gb|ACDM01000052.1| GENE 29 25718 - 28099 1109 793 aa, chain - ## HITS:1 COG:yhcD KEGG:ns NR:ns ## COG: yhcD COG3188 # Protein_GI_number: 16131106 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 793 1 793 793 1536 100.0 0 MLKKTLLAYTIGFAFSPPANADGIEIAAVDFDRETLKSLGVDPNISHYFSRSARFLPGEY SLIVSVNGEKKGNIATRFDENGDICLDQAFLQQAGLKIPSEEKNGCYDYILSYPGTTITP LPNQEALDIIVSPQAIIPIGLDLTNAATGGTAALLNYSLMSSRAEFSNGSSDYSQAALEG GININDWMLRSHQFLTQTNGTFSNQNSSTYLQRTFTDLKTLMRAGEVNLNNSVLEGASIY GIEIAPDNALQTSGSGVQVTGIANTSQARVEIRQQGVLIHSILVPAGAFTIPDVPVRNGN SDLNVTVVETDGSSHNYIVPSTLFNQHVESFQGYRFAIGRVDDDYDESPWVISASSGWNL TRWSAMNGGVIVAENYQAASIRSSLVPLPDLTVSSQISTSQDTKDSLQGQKYRLDANYNL PFSLGLTTSLTRSDRHYRELSEAIDDDYTDPTKSTYALGLNWSNSILGGFNISGYKTYSY DGDNDSSNLNINWNKAFKHATVSVNWQHQLSASENNEDDGDLFYVNISIPFGRSNTATLY TRHDDHKTHYGTGVMGVVSDEMSYYVNAERDHDERETSLNGSISSNLHYTQVSLAAGASG SDSRTYNGTMSGGIAVHDQGVTFSPWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGN AVIPSIQPWRTSGVEIDTASLPKNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITL SDGKKLPRGVAIEDSEGNYLTTSVDDGVVFLNNIKPDMVLDIKDEQQSCRIHLTFPEDAP KDVFYETATGECQ >gi|223713546|gb|ACDM01000052.1| GENE 30 28120 - 28794 378 224 aa, chain - ## HITS:1 COG:yhcA KEGG:ns NR:ns ## COG: yhcA COG3121 # Protein_GI_number: 16131105 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 224 1 224 224 413 100.0 1e-115 MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK >gi|223713546|gb|ACDM01000052.1| GENE 31 28966 - 29730 556 254 aa, chain - ## HITS:1 COG:no KEGG:JW3181 NR:ns ## KEGG: JW3181 # Name: gltF # Def: periplasmic protein # Organism: E.coli_J # Pathway: not_defined # 1 254 1 254 254 446 100.0 1e-124 MFFKKNLTTAAICAALSVAAFSAMATDSTDTELTIIGEYTPGACTPVVTGGGIVDYGKHH NSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDT LVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNGGIHAADDTGEIPVDLIQTDHWSAATP TWKASSNGAFCSLTSCSAIERGYSVAKTGELTPVAITAVTFPLLIDAAVNDNTILGSDET IKLDGNVTISVQYL >gi|223713546|gb|ACDM01000052.1| GENE 32 30290 - 31708 1692 472 aa, chain - ## HITS:1 COG:gltD KEGG:ns NR:ns ## COG: gltD COG0493 # Protein_GI_number: 16131103 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 1 472 1 472 472 975 100.0 0 MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCP VHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIG NIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE IGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVG TYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAM DCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVS GVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQG RIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV >gi|223713546|gb|ACDM01000052.1| GENE 33 31721 - 36181 4616 1486 aa, chain - ## HITS:1 COG:ECs4091_2 KEGG:ns NR:ns ## COG: ECs4091_2 COG0069 # Protein_GI_number: 15833345 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Escherichia coli O157:H7 # 379 1194 1 816 816 1647 99.0 0 MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQ KPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEELQRETLSIVGWRDVP TNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLEADKDFYVCSLS NLVNIYKGLCMPTDLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGE INTITGNRQWARARTYKFQTPLIPDLHDAAPFVNETGSDSSSMDNMLELLLAGGMDIIRA MRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWDGPAGIVMSDGRFAACNLDRNGLRPAR YVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGRILHSAETDDDLKSRH PYKEWMEKNVRRLVPFEDLPDEEVGSRELDDDTLASYQKQFNYSAEELDSVIRVLGENGQ EAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVF CEAEGQAHRLSFKSPILLYSDFKQLTTMKEEHYRADTLDITFDVTKTTLEATVKELCDKA EKMVRSGTVLLVLSDRNIAKDRLPVPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPH HFAVLLGFGATAIYPYLAYETLGRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGIS TIASYRCSKLFEAVGLHDDVVGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQ GGLLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGE NAVNIADVEPASELFKRFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYG TNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSV PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADL ITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDII KAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYF EFIARETRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALY CTENNPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQG LAADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCILGK TGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLSVDALAIHEEHLRGLITEHVQHTGS QRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ >gi|223713546|gb|ACDM01000052.1| GENE 34 36880 - 37785 934 301 aa, chain + ## HITS:1 COG:ECs4090 KEGG:ns NR:ns ## COG: ECs4090 COG1242 # Protein_GI_number: 15833344 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1 301 9 309 309 631 100.0 0 MFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHRSIAEQLA HQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQANIVGLCVGTRPDCVPDAVLD LLCEYKDQGYEVWLELGLQTAHDKTLHRINRGHDFACYQRTTQLARQRGLKVCSHLIVGL PGEGQAECLQTLERVVETGVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEM IRHTPPEVIYHRISASARRPTLLAPLWCENRWTGMVELDRYLNEHGVQGSALGRPWLPPT E >gi|223713546|gb|ACDM01000052.1| GENE 35 37881 - 40217 2781 778 aa, chain + ## HITS:1 COG:ZarcB_1 KEGG:ns NR:ns ## COG: ZarcB_1 COG0642 # Protein_GI_number: 15803750 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 EDL933 # 1 562 1 562 562 1055 100.0 0 MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIF FGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKDNIAQLNQEIA VREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGC NRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKA CFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG IVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTS FLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQVT VRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLA KNMGGDITVTSEQGKGSTFTLTIHAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIV ARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDL PPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTMTTEENSK SEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIK GAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK >gi|223713546|gb|ACDM01000052.1| GENE 36 40447 - 41100 810 217 aa, chain + ## HITS:1 COG:yhbL KEGG:ns NR:ns ## COG: yhbL COG3155 # Protein_GI_number: 16131099 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in an early stage of isoprenoid biosynthesis # Organism: Escherichia coli K12 # 1 217 4 220 220 407 100.0 1e-114 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV DEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE >gi|223713546|gb|ACDM01000052.1| GENE 37 41118 - 41825 510 235 aa, chain + ## HITS:1 COG:mtgA KEGG:ns NR:ns ## COG: mtgA COG0744 # Protein_GI_number: 16131098 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Escherichia coli K12 # 1 235 8 242 242 457 99.0 1e-129 MFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAVMVERQVSAWLHGNFRYVAHSDWV SMDQISPWMGLAVIAAEDQKFPEHWGFDVASIEKALAHNERNENRIRGASTISQQTAKNL FLWDGRSWVRKGLEAGLTLGIETVWSKKRILTVYLNIAEFGDGVFGVEAAAQRYFHKPAS KLTRSEAALLAAVLPNPLRFKVSSPSGYVRSRQAWILRQMYQLGGEPFMQQHQLD >gi|223713546|gb|ACDM01000052.1| GENE 38 41822 - 42454 512 210 aa, chain - ## HITS:1 COG:no KEGG:B21_03023 NR:ns ## KEGG: B21_03023 # Name: yrbL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 210 1 210 210 426 100.0 1e-118 MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLGRRLKDW SGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCRYEEDIAQLRQLLKQLKRY LQDNRIVTMSLKPQNILCHRISESEVIPVVCDNIGESTLIPLATWSKWCCLRKQERLWKR FIAQPALAIALQKDLQPRESKTLALTSREA >gi|223713546|gb|ACDM01000052.1| GENE 39 42668 - 42940 260 90 aa, chain - ## HITS:1 COG:ECs4085 KEGG:ns NR:ns ## COG: ECs4085 COG1925 # Protein_GI_number: 15833339 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 149 100.0 2e-36 MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEAEANSVIALLMLDSAKG RQIEVEATGPQEEEALAAVIALFNSGFDED >gi|223713546|gb|ACDM01000052.1| GENE 40 42937 - 43791 864 284 aa, chain - ## HITS:1 COG:ECs4084 KEGG:ns NR:ns ## COG: ECs4084 COG1660 # Protein_GI_number: 15833338 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Escherichia coli O157:H7 # 1 284 1 284 284 556 100.0 1e-158 MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNM PESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKES DLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYV FDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSY LTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP >gi|223713546|gb|ACDM01000052.1| GENE 41 43837 - 44328 359 163 aa, chain - ## HITS:1 COG:ptsN KEGG:ns NR:ns ## COG: ptsN COG1762 # Protein_GI_number: 16131094 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1 163 1 163 163 303 100.0 1e-82 MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKM GSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTH LHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTPDEA >gi|223713546|gb|ACDM01000052.1| GENE 42 44446 - 44733 458 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930 [Citrobacter youngae ATCC 29220] # 1 95 1 95 95 181 93 2e-44 MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE IHASAEGQDMYAAIDGLIDKLTRQLTKHKDKLKQH >gi|223713546|gb|ACDM01000052.1| GENE 43 44756 - 46189 1467 477 aa, chain - ## HITS:1 COG:rpoN KEGG:ns NR:ns ## COG: rpoN COG1508 # Protein_GI_number: 16131092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Escherichia coli K12 # 1 477 1 477 477 872 100.0 0 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE TQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTL QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLK RIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV >gi|223713546|gb|ACDM01000052.1| GENE 44 46237 - 46962 287 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 2 235 3 233 305 115 31 1e-24 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI IIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE LMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII EHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFR L >gi|223713546|gb|ACDM01000052.1| GENE 45 46969 - 47526 582 185 aa, chain - ## HITS:1 COG:ECs4079 KEGG:ns NR:ns ## COG: ECs4079 COG1934 # Protein_GI_number: 15833333 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 185 1 185 185 330 100.0 1e-90 MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIV TQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDF VVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPA QKKGN >gi|223713546|gb|ACDM01000052.1| GENE 46 47495 - 48070 394 191 aa, chain - ## HITS:1 COG:ECs4078 KEGG:ns NR:ns ## COG: ECs4078 COG3117 # Protein_GI_number: 15833332 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 354 100.0 7e-98 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT SYEIQNKQTQP >gi|223713546|gb|ACDM01000052.1| GENE 47 48067 - 48633 738 188 aa, chain - ## HITS:1 COG:ECs4077 KEGG:ns NR:ns ## COG: ECs4077 COG1778 # Protein_GI_number: 15833331 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 355 100.0 3e-98 MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGY GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENV AYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL DEAKGQSI >gi|223713546|gb|ACDM01000052.1| GENE 48 48654 - 49640 951 328 aa, chain - ## HITS:1 COG:yrbH_1 KEGG:ns NR:ns ## COG: yrbH_1 COG0794 # Protein_GI_number: 16131087 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 1 212 1 212 212 424 100.0 1e-118 MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKS GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLK RLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLK ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMT VICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSR HITSVMVADGDHLLGVLHMHDLLRAGVV >gi|223713546|gb|ACDM01000052.1| GENE 49 49654 - 50631 698 325 aa, chain - ## HITS:1 COG:yrbG KEGG:ns NR:ns ## COG: yrbG COG0530 # Protein_GI_number: 16131086 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/Na+ antiporter # Organism: Escherichia coli K12 # 1 325 1 325 325 482 100.0 1e-136 MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAA SLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLY DGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLG IALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIA VGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRG VGVLLTGGFIVWLAMLYWLSPILVE >gi|223713546|gb|ACDM01000052.1| GENE 50 50841 - 51650 637 269 aa, chain + ## HITS:1 COG:ECs4074 KEGG:ns NR:ns ## COG: ECs4074 COG1127 # Protein_GI_number: 15833328 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, ATPase component # Organism: Escherichia coli O157:H7 # 1 269 1 269 269 505 100.0 1e-143 MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRV RQFLDGIADGPVPFRYPAGDYHADLLPGS >gi|223713546|gb|ACDM01000052.1| GENE 51 51658 - 52440 802 260 aa, chain + ## HITS:1 COG:ECs4073 KEGG:ns NR:ns ## COG: ECs4073 COG0767 # Protein_GI_number: 15833327 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Escherichia coli O157:H7 # 1 260 1 260 260 438 100.0 1e-123 MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIV VSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEI GLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGI DSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVV HSSLAVLGLDFVLTALMFGN >gi|223713546|gb|ACDM01000052.1| GENE 52 52445 - 52996 653 183 aa, chain + ## HITS:1 COG:ECs4072 KEGG:ns NR:ns ## COG: ECs4072 COG1463 # Protein_GI_number: 15833326 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Escherichia coli O157:H7 # 1 183 1 183 183 335 100.0 3e-92 MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSI GGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFED PELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVG TTK >gi|223713546|gb|ACDM01000052.1| GENE 53 53015 - 53650 878 211 aa, chain + ## HITS:1 COG:yrbC KEGG:ns NR:ns ## COG: yrbC COG2854 # Protein_GI_number: 16131082 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Escherichia coli K12 # 1 211 1 211 211 394 100.0 1e-109 MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIV DQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIA PEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQNE WGTLLRTKGIDGLTAQLKSISQQKITLEEKK >gi|223713546|gb|ACDM01000052.1| GENE 54 53650 - 53943 344 97 aa, chain + ## HITS:1 COG:yrbB KEGG:ns NR:ns ## COG: yrbB COG3113 # Protein_GI_number: 16131081 # Func_class: R General function prediction only # Function: Predicted NTP binding protein (contains STAS domain) # Organism: Escherichia coli K12 # 1 97 33 129 129 170 100.0 6e-43 MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDLSRVSRVDTGGLALLLH LIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR >gi|223713546|gb|ACDM01000052.1| GENE 55 54088 - 54357 321 89 aa, chain + ## HITS:1 COG:ECs4069 KEGG:ns NR:ns ## COG: ECs4069 COG5007 # Protein_GI_number: 15833323 # Func_class: K Transcription # Function: Predicted transcriptional regulator, BolA superfamily # Organism: Escherichia coli O157:H7 # 1 89 1 89 89 179 100.0 1e-45 MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME YIADNRIHAVSIKAYTPAEWARDRKLNGF >gi|223713546|gb|ACDM01000052.1| GENE 56 54412 - 55671 1444 419 aa, chain + ## HITS:1 COG:murA KEGG:ns NR:ns ## COG: murA COG0766 # Protein_GI_number: 16131079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Escherichia coli K12 # 1 419 1 419 419 812 100.0 0 MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQL GAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGAR PVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTT IIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLV AAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHP AFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKL SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE >gi|223713546|gb|ACDM01000052.1| GENE 57 55719 - 55997 298 92 aa, chain - ## HITS:1 COG:Znlp KEGG:ns NR:ns ## COG: Znlp COG3423 # Protein_GI_number: 15803728 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 1 92 1 92 92 174 100.0 4e-44 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK >gi|223713546|gb|ACDM01000052.1| GENE 58 56225 - 57196 1072 323 aa, chain - ## HITS:1 COG:ispB KEGG:ns NR:ns ## COG: ispB COG0142 # Protein_GI_number: 16131077 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Escherichia coli K12 # 1 323 1 323 323 624 100.0 1e-179 MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVG YEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAF QMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQ CSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPL LHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQ VLPDTPWREALIGLAHIAVQRDR >gi|223713546|gb|ACDM01000052.1| GENE 59 57431 - 57766 562 111 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] # 1 111 1 111 111 221 97 2e-56 MCAEAEFYMYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVP FVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA >gi|223713546|gb|ACDM01000052.1| GENE 60 57787 - 58044 437 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803725|ref|NP_289759.1| 50S ribosomal protein L27 [Escherichia coli O157:H7 EDL933] # 1 85 1 85 85 172 100 5e-42 MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF AKADGKVKFEVKGPKNRKFISIEAE >gi|223713546|gb|ACDM01000052.1| GENE 61 58171 - 59136 751 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily [Haemophilus influenzae R2866] # 1 303 1 300 306 293 49 2e-78 MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFLMASIGLGAILAVKKRL PPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQVIGQLSPVGMMVASVFIL KEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWGVIFGVGAATVWVSYGVAQKV LLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQLACLIFCGLNTLVGYGALAEAM ARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFARPMLNLLGYLGAFVVVAGAMYSAIG HRIWGGLRKHTTVVSQPRAGE >gi|223713546|gb|ACDM01000052.1| GENE 62 59152 - 60324 1473 390 aa, chain + ## HITS:1 COG:yhbZ KEGG:ns NR:ns ## COG: yhbZ COG0536 # Protein_GI_number: 16131073 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 390 1 390 390 690 100.0 0 MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWMEADENLNTLIDYR FEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKG GWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVS AAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRV LLHLIDIDPIDGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAI AEALGWEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQ LEEIAEEDDEDWDDDWDEDDEEGVEFIYKR >gi|223713546|gb|ACDM01000052.1| GENE 63 60510 - 61829 932 439 aa, chain - ## HITS:1 COG:dacB KEGG:ns NR:ns ## COG: dacB COG2027 # Protein_GI_number: 16131072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Escherichia coli K12 # 1 439 39 477 477 882 100.0 0 MVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLK GDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQ CFSAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE LDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQT QVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQ ILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGS LQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNR RIPLVRFESRLYKDIYQNN >gi|223713546|gb|ACDM01000052.1| GENE 64 62191 - 62667 603 158 aa, chain + ## HITS:1 COG:STM3299 KEGG:ns NR:ns ## COG: STM3299 COG0782 # Protein_GI_number: 16766595 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Salmonella typhimurium LT2 # 1 158 1 158 158 282 96.0 2e-76 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL >gi|223713546|gb|ACDM01000052.1| GENE 65 62823 - 63116 454 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Erwinia tasmaniensis Et1/99] # 1 97 1 97 97 179 93 5e-44 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKT LIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR >gi|223713546|gb|ACDM01000052.1| GENE 66 63242 - 63871 610 209 aa, chain + ## HITS:1 COG:ECs4058 KEGG:ns NR:ns ## COG: ECs4058 COG0293 # Protein_GI_number: 15833312 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 23S rRNA methylase # Organism: Escherichia coli O157:H7 # 1 209 1 209 209 409 100.0 1e-114 MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA APGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS LFTKVKVRKPDSSRARSREVYIVATGRKP >gi|223713546|gb|ACDM01000052.1| GENE 67 63962 - 65905 1683 647 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1 599 1 597 636 652 56 0.0 MSDMAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNNDQVREARINGREIN VTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWI FFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRF QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFS GADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAG HAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEE IIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHM SDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD VRPPAGWEEPGASNNSGDNGSPKAPRPVDEPRTPNPGNTMSEQLGDK >gi|223713546|gb|ACDM01000052.1| GENE 68 65995 - 66843 836 282 aa, chain + ## HITS:1 COG:ECs4056 KEGG:ns NR:ns ## COG: ECs4056 COG0294 # Protein_GI_number: 15833310 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Escherichia coli O157:H7 # 1 282 16 297 297 556 100.0 1e-158 MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGE STRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSL SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKE KLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSL ACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKENKRYE >gi|223713546|gb|ACDM01000052.1| GENE 69 66836 - 68173 1604 445 aa, chain + ## HITS:1 COG:mrsA KEGG:ns NR:ns ## COG: mrsA COG1109 # Protein_GI_number: 16131066 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli K12 # 1 445 1 445 445 836 100.0 0 MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLES ALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTK LPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIEFCKATFPNELSLSELKIVVD CANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVGATDVRALQARVLAEKADLGIAF DGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQLRGGAVGTLMSNMGLELALKQLGIP FARAKVGDRYVLEKMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLAAMARNHMSLH DLCSGMKMFPQILVNVRYTAGSGDPLEHESVKAVTAEVEAALGNRGRVLLRKSGTEPLIR VMVEGEDEAQVTEFAHRIADAVKAV >gi|223713546|gb|ACDM01000052.1| GENE 70 68401 - 68733 400 110 aa, chain + ## HITS:1 COG:ECs4054 KEGG:ns NR:ns ## COG: ECs4054 COG1314 # Protein_GI_number: 15833308 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Escherichia coli O157:H7 # 1 110 1 110 110 185 100.0 2e-47 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPN >gi|223713546|gb|ACDM01000052.1| GENE 71 69293 - 70918 396 541 aa, chain + ## HITS:1 COG:yhbX KEGG:ns NR:ns ## COG: yhbX COG2194 # Protein_GI_number: 16131064 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 541 7 547 547 1092 99.0 0 MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFFVLTILVVKRISSLPLR LLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDPDEVVKMLGMYIPYLCAFA FLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQFAYKDAKNKKAFSPYILASR FATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSL YGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMA NQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKL IVLHLNGSHEPSCSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMY FADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNY LINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQ G >gi|223713546|gb|ACDM01000052.1| GENE 72 70926 - 72269 1700 447 aa, chain - ## HITS:1 COG:argG KEGG:ns NR:ns ## COG: argG COG0137 # Protein_GI_number: 16131063 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Escherichia coli K12 # 1 447 1 447 447 913 100.0 0 MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRA MEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL HIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEV TLELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLF GYAKTGLLSSSAASGVPQVENLENKGQ >gi|223713546|gb|ACDM01000052.1| GENE 73 72930 - 73352 393 140 aa, chain + ## HITS:1 COG:ECs4051 KEGG:ns NR:ns ## COG: ECs4051 COG0779 # Protein_GI_number: 15833305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 140 13 152 152 273 100.0 5e-74 MITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE GKDEVFALSNIQKANLVPHF >gi|223713546|gb|ACDM01000052.1| GENE 74 73380 - 74867 1026 495 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 482 9 483 537 399 43 1e-110 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA LIMAARNICWFGDEA >gi|223713546|gb|ACDM01000052.1| GENE 75 74892 - 77564 3171 890 aa, chain + ## HITS:1 COG:ECs4049 KEGG:ns NR:ns ## COG: ECs4049 COG0532 # Protein_GI_number: 15833303 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Escherichia coli O157:H7 # 1 890 1 890 890 1394 100.0 0 MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLT LQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREA EESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEA AELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAE DESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQ KPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEE MGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGE AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI EAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG IDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCG FEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGK FREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI IGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKA AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEG ELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA >gi|223713546|gb|ACDM01000052.1| GENE 76 77728 - 78129 632 133 aa, chain + ## HITS:1 COG:ECs4048 KEGG:ns NR:ns ## COG: ECs4048 COG0858 # Protein_GI_number: 15833302 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Escherichia coli O157:H7 # 1 133 1 133 133 239 100.0 1e-63 MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDK DEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHD EERRVNPDDSKED >gi|223713546|gb|ACDM01000052.1| GENE 77 78129 - 79073 1085 314 aa, chain + ## HITS:1 COG:ECs4047 KEGG:ns NR:ns ## COG: ECs4047 COG0130 # Protein_GI_number: 15833301 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Escherichia coli O157:H7 # 1 314 1 314 314 615 100.0 1e-176 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE GRVAPRRLVVEYPA >gi|223713546|gb|ACDM01000052.1| GENE 78 79222 - 79491 445 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16131057|ref|NP_417634.1| 30S ribosomal subunit protein S15 [Escherichia coli str. K-12 substr. MG1655] # 1 89 1 89 89 176 100 6e-43 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV SQRRKLLDYLKRKDVARYTQLIERLGLRR >gi|223713546|gb|ACDM01000052.1| GENE 79 79738 - 81873 188 711 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229537485|ref|ZP_04426621.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] # 621 703 433 516 557 77 46 4e-13 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE >gi|223713546|gb|ACDM01000052.1| GENE 80 81982 - 82866 573 294 aa, chain + ## HITS:1 COG:ECs4044 KEGG:ns NR:ns ## COG: ECs4044 COG4785 # Protein_GI_number: 15833298 # Func_class: R General function prediction only # Function: Lipoprotein NlpI, contains TPR repeats # Organism: Escherichia coli O157:H7 # 1 294 1 294 294 561 100.0 1e-160 MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ >gi|223713546|gb|ACDM01000052.1| GENE 81 83046 - 84935 2375 629 aa, chain + ## HITS:1 COG:ECs4043 KEGG:ns NR:ns ## COG: ECs4043 COG0513 # Protein_GI_number: 15833297 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1 629 18 646 646 1055 99.0 0 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD GRRFSGERREGRAPRRDDSTGRRRFGGDA >gi|223713546|gb|ACDM01000052.1| GENE 82 85089 - 86333 1641 414 aa, chain + ## HITS:1 COG:mtr KEGG:ns NR:ns ## COG: mtr COG0814 # Protein_GI_number: 16131053 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1 414 1 414 414 696 100.0 0 MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGL MILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE MSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATL FNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALY TIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLG VTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPVVGGLLFPNGFLYAIGYAGLAATIWAA IVPALLARASRKRFGSPKFRVWGGKPMIALILVFGVGNALVHILSSFNLLPVYQ >gi|223713546|gb|ACDM01000052.1| GENE 83 86451 - 87458 946 335 aa, chain - ## HITS:1 COG:yhbW KEGG:ns NR:ns ## COG: yhbW COG2141 # Protein_GI_number: 16131052 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 335 1 335 335 676 100.0 0 MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAAT SVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRT MMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLA AQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFT SMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILR ETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG >gi|223713546|gb|ACDM01000052.1| GENE 84 87539 - 88417 1030 292 aa, chain - ## HITS:1 COG:yhbV KEGG:ns NR:ns ## COG: yhbV COG0826 # Protein_GI_number: 16131051 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli K12 # 1 292 7 298 298 600 100.0 1e-171 MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGS GKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYN AVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARC FTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGL VDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA >gi|223713546|gb|ACDM01000052.1| GENE 85 88426 - 89421 855 331 aa, chain - ## HITS:1 COG:yhbU KEGG:ns NR:ns ## COG: yhbU COG0826 # Protein_GI_number: 16131050 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli K12 # 1 331 1 331 331 678 100.0 0 MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA TNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSS YLTGESPNTIGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQ NFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ >gi|223713546|gb|ACDM01000052.1| GENE 86 89630 - 90154 691 174 aa, chain + ## HITS:1 COG:ECs4038 KEGG:ns NR:ns ## COG: ECs4038 COG3154 # Protein_GI_number: 15833292 # Func_class: I Lipid transport and metabolism # Function: Putative lipid carrier protein # Organism: Escherichia coli O157:H7 # 1 174 1 174 174 325 100.0 2e-89 MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSI HVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEG DTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC >gi|223713546|gb|ACDM01000052.1| GENE 87 90148 - 90651 683 167 aa, chain + ## HITS:1 COG:ECs4037 KEGG:ns NR:ns ## COG: ECs4037 COG3153 # Protein_GI_number: 15833291 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 332 100.0 2e-91 MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFS PVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRF GFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF >gi|223713546|gb|ACDM01000052.1| GENE 88 90638 - 90940 269 100 aa, chain - ## HITS:1 COG:yhbQ KEGG:ns NR:ns ## COG: yhbQ COG2827 # Protein_GI_number: 16131047 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Escherichia coli K12 # 1 100 1 100 100 181 100.0 3e-46 MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLVFSAPVGDRSLA LRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD >gi|223713546|gb|ACDM01000052.1| GENE 89 90991 - 91434 343 147 aa, chain + ## HITS:1 COG:yhbP KEGG:ns NR:ns ## COG: yhbP COG3787 # Protein_GI_number: 16131046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 147 1 147 147 291 100.0 3e-79 METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQ AAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRL DEIKFTDNTLGFGKKMIWLRDSGTEQA >gi|223713546|gb|ACDM01000052.1| GENE 90 91414 - 91932 608 172 aa, chain - ## HITS:1 COG:ECs4034 KEGG:ns NR:ns ## COG: ECs4034 COG0693 # Protein_GI_number: 15833288 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli O157:H7 # 1 172 15 186 186 330 100.0 7e-91 MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDE VTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRK LTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA >gi|223713546|gb|ACDM01000052.1| GENE 91 92060 - 92695 568 211 aa, chain + ## HITS:1 COG:yraR KEGG:ns NR:ns ## COG: yraR COG0702 # Protein_GI_number: 16131044 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 211 16 226 226 418 99.0 1e-117 MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVT DPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF FYNRVKGEMEEALIAQNWPKLTIARPSMLLGARSKQRMNETLFAPLFRLLPGNWKSIDAR DVARVMLAESMRPEHEGVTILSSSELRKRAE >gi|223713546|gb|ACDM01000052.1| GENE 92 92768 - 93808 1264 346 aa, chain + ## HITS:1 COG:yraQ KEGG:ns NR:ns ## COG: yraQ COG0701 # Protein_GI_number: 16131043 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli K12 # 1 346 1 346 346 575 100.0 1e-164 MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADA NPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSL PGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAG LVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVL VLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALA LLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF >gi|223713546|gb|ACDM01000052.1| GENE 93 93922 - 94497 630 191 aa, chain - ## HITS:1 COG:ECs4031 KEGG:ns NR:ns ## COG: ECs4031 COG2823 # Protein_GI_number: 15833285 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 296 100.0 2e-80 MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSK DEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLG EASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGV KRVTTAFTFIK >gi|223713546|gb|ACDM01000052.1| GENE 94 94507 - 95097 473 196 aa, chain - ## HITS:1 COG:ECs4030 KEGG:ns NR:ns ## COG: ECs4030 COG0279 # Protein_GI_number: 15833284 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Escherichia coli O157:H7 # 1 196 1 196 196 370 100.0 1e-103 MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFA ASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVN CLCDLIDNTLFPHQDD >gi|223713546|gb|ACDM01000052.1| GENE 95 95117 - 95512 165 131 aa, chain - ## HITS:1 COG:yraN KEGG:ns NR:ns ## COG: yraN COG0792 # Protein_GI_number: 16131040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Escherichia coli K12 # 1 131 1 131 131 249 100.0 1e-66 MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTT IFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEV EWIKDAFNDHS >gi|223713546|gb|ACDM01000052.1| GENE 96 95470 - 97506 1958 678 aa, chain - ## HITS:1 COG:yraM KEGG:ns NR:ns ## COG: yraM COG3107 # Protein_GI_number: 16131039 # Func_class: R General function prediction only # Function: Putative lipoprotein # Organism: Escherichia coli K12 # 1 678 1 678 678 1198 100.0 0 MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQN LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQA LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPA ADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKI YDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNIC YFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFG STSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYI VATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGN LPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVI NRNLSWLQYQQGQVVPVS >gi|223713546|gb|ACDM01000052.1| GENE 97 97571 - 98431 1014 286 aa, chain + ## HITS:1 COG:ECs4027 KEGG:ns NR:ns ## COG: ECs4027 COG0313 # Protein_GI_number: 15833281 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 533 100.0 1e-151 MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINA RLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLP GPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLE DIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEE DLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG >gi|223713546|gb|ACDM01000052.1| GENE 98 98474 - 99565 510 363 aa, chain - ## HITS:1 COG:yraK KEGG:ns NR:ns ## COG: yraK COG3539 # Protein_GI_number: 16131037 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 363 1 363 363 672 100.0 0 MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSAT LSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLNDSLDIKTTLQANDIPGLTT DQVVSVNTRFTQIKNNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTI PKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQ KFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVP DVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITV IVR >gi|223713546|gb|ACDM01000052.1| GENE 99 99576 - 101018 1029 480 aa, chain - ## HITS:1 COG:yraJ KEGG:ns NR:ns ## COG: yraJ COG3188 # Protein_GI_number: 16131036 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 480 359 838 838 895 100.0 0 MMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGI GIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDG YFSFNEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVS GQQWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMR LDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGG VVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSV DTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDD TGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH >gi|223713546|gb|ACDM01000052.1| GENE 100 101084 - 102091 487 335 aa, chain - ## HITS:1 COG:yraJ KEGG:ns NR:ns ## COG: yraJ COG3188 # Protein_GI_number: 16131036 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 319 1 319 838 624 99.0 1e-179 MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGI PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS AIVTIRQNGYVIYQSNVSGVPLKLTISTPLPTAAI >gi|223713546|gb|ACDM01000052.1| GENE 101 102120 - 102815 383 231 aa, chain - ## HITS:1 COG:yraI KEGG:ns NR:ns ## COG: yraI COG3121 # Protein_GI_number: 16131035 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 231 1 231 231 469 100.0 1e-132 MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW VDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD DVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLA VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ >gi|223713546|gb|ACDM01000052.1| GENE 102 102895 - 103479 511 194 aa, chain - ## HITS:1 COG:yraH KEGG:ns NR:ns ## COG: yraH COG3539 # Protein_GI_number: 16131034 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 194 1 194 194 374 100.0 1e-104 MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFR NIGERSPKIPFTIPLVNCPMTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAG IAATGVGIRIDDAESGNIMPLNAMGNDNTVYQIPAESNGIVNVDLIAYYVSTVVPSEITP GEADAIVNVTLDYR >gi|223713546|gb|ACDM01000052.1| GENE 103 103880 - 104581 689 233 aa, chain - ## HITS:1 COG:agaI KEGG:ns NR:ns ## COG: agaI COG0363 # Protein_GI_number: 16131033 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 1 233 19 251 251 460 99.0 1e-130 MQTLQQVENYTALSERASEYLLAVIRSKPNAVICLATGATPLLTYHYLVEKIHQQQVDVS QLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLI ARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITL GLKDILNAREVLLLVTGEGKQDATDRFLTAKVSTAIPASFLWLHSNFICLINT >gi|223713546|gb|ACDM01000052.1| GENE 104 104636 - 105427 887 263 aa, chain - ## HITS:1 COG:agaD KEGG:ns NR:ns ## COG: agaD COG3716 # Protein_GI_number: 16131032 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli K12 # 1 263 1 263 263 506 100.0 1e-143 MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDN LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG ICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL GITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKK AHPVLLIGVTFVLSIVCSAFGIL >gi|223713546|gb|ACDM01000052.1| GENE 105 105417 - 106220 786 267 aa, chain - ## HITS:1 COG:agaC KEGG:ns NR:ns ## COG: agaC COG3715 # Protein_GI_number: 16131031 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli K12 # 1 267 1 267 267 479 100.0 1e-135 MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAILGDIQTGLITGGLTELA FAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSL FMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTH GFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYEF FNAKSRQQAQPQPVASKNEEEDYSNGI >gi|223713546|gb|ACDM01000052.1| GENE 106 106259 - 106735 592 158 aa, chain - ## HITS:1 COG:agaB KEGG:ns NR:ns ## COG: agaB COG3444 # Protein_GI_number: 16131030 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 158 1 158 158 280 100.0 8e-76 MTSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFG IRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQIS SKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIPD >gi|223713546|gb|ACDM01000052.1| GENE 107 106902 - 107762 918 286 aa, chain - ## HITS:1 COG:ECs4017 KEGG:ns NR:ns ## COG: ECs4017 COG0191 # Protein_GI_number: 15833271 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 574 99.0 1e-164 MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALE EIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVHSAMIDGSHFPFAENVKLVKSV VDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH GLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFA GAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA >gi|223713546|gb|ACDM01000052.1| GENE 108 107775 - 108929 939 384 aa, chain - ## HITS:1 COG:agaS KEGG:ns NR:ns ## COG: agaS COG2222 # Protein_GI_number: 16131028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Escherichia coli K12 # 1 384 1 384 384 771 100.0 0 MPENYTPAAAATGTWTEEEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTG AGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPAHPLLLISFGRSGNSPESV AAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMM ASCLAVFAPETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAAR ESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELR RDNQAMRVIAIAAESSDIVAAGPHIILPPSRHFIDVEQAFCFLMYAQTFALMQSLHMGNT PDTPSASGTVNRVVQGVIIHPWQA >gi|223713546|gb|ACDM01000052.1| GENE 109 109280 - 110413 973 377 aa, chain - ## HITS:1 COG:Z4489 KEGG:ns NR:ns ## COG: Z4489 COG1820 # Protein_GI_number: 15803675 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Escherichia coli O157:H7 EDL933 # 1 377 1 377 377 723 98.0 0 MTHVLRARRLLTEEGWLDDHQLRIADGVIAAIEPIPAGVTERDAELLCPAYIDTHVHGGA GVDVMDDAPDVLDKLAMHKAREGVGSWLPTTVTTPLNTIHAALKRIAQRCQRGGPGAQVL GSYLEGPYFTPQNKGAHPPELFRELEIAELDQLIAVSQHTLRVVALAPEKEGALQAIRHL KQQNVRVMLGHSAATWQQTRAAFDAGADGLVHCYNGMTGLHHREPGMVGAGLTDKRAWLE LIADGHHVHPAAMSLCCCCAKERIVLITDAMQAAGMPDGRYTLCGEEVQMHGGVVRTASG GLAGSTLSVDAAVRNMVELTGVTPAEAIHMASLHPARMLGVDGVLGSLKPGKRASVVALD SGLHVQQIWIQGQLASF >gi|223713546|gb|ACDM01000052.1| GENE 110 110410 - 110844 569 144 aa, chain - ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 144 1 144 144 256 100.0 1e-68 MLSIILTGHGGFASGMEKAMKQILGEQSQFIAIDFPETSSTALLTSQLEEAIAQLDCEDG IVFLTDLLGGTPFRVASTLAMQKPGCEVITGTNLQLLLEMVLEREGLSGEEFRVQALECG HRGLTSLVDELGRCHEECPVEEGI >gi|223713546|gb|ACDM01000052.1| GENE 111 110862 - 111740 1089 292 aa, chain - ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1 292 1 292 292 561 100.0 1e-160 MASNQTTLPNVSENEETLLTGVNENVYEDQSIGAELTKKDINRVAWRSMLLQASFNYERM QASGWLYGLLPALKKIHTNKRDLARAMKGHMGFFNTHPFLVTFVIGIILAMERSKQDVNS IQSTKIAVGAPLGGIGDAMFWLTLLPICGGIGASLALQGSILGAVVFIVLFNVVHLGLRF GLAHYAYRMGVAAIPLIKANTKKVGHAASIVGMTVIGALVATYVRLSTTLEITAGDAVVK LQADVIDKLMPAFLPLVYTLTMFWLVRRGWSPLRLIAVTVVLGIVGKFCHFL >gi|223713546|gb|ACDM01000052.1| GENE 112 111730 - 112509 1045 259 aa, chain - ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1 259 1 259 259 427 99.0 1e-119 MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVW MGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGV MSRCDRMAENADTRGIERVNYLALLALGIFYFLCAFLPIYFGAEHAKTIIDVLPQRLIDG LGVAGGIMPAIGFAVLLKIMMKNVYIPYFILGFVAAAWLKLPVLAIAAAALAMALIDLLR KSPEPTQPAAQKEEFEDGI >gi|223713546|gb|ACDM01000052.1| GENE 113 112520 - 112993 554 157 aa, chain - ## HITS:1 COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 157 13 169 169 305 99.0 3e-83 MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGSAVRF WTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTV SVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL >gi|223713546|gb|ACDM01000052.1| GENE 114 113016 - 114296 1325 426 aa, chain - ## HITS:1 COG:agaZ KEGG:ns NR:ns ## COG: agaZ COG4573 # Protein_GI_number: 16131024 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted tagatose 6-phosphate kinase # Organism: Escherichia coli K12 # 1 426 1 426 426 862 100.0 0 MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYT GMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAG FKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPG GAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQ PAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSL AAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPD SQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYH TACEGQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:06:40 2011 Seq name: gi|223713545|gb|ACDM01000053.1| Escherichia sp. 4_1_40B cont1.53, whole genome shotgun sequence Length of sequence - 7834 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 35 - 217 159 ## COG1349 Transcriptional regulators of sugar metabolism + Term 299 - 343 -0.9 - Term 94 - 136 2.1 2 2 Op 1 . - CDS 272 - 736 249 ## ECUMN_3612 hypothetical protein 3 2 Op 2 3/1.000 - CDS 736 - 1071 260 ## COG2002 Regulators of stationary/sporulation gene expression - Prom 1100 - 1159 7.6 - Term 1159 - 1199 2.5 4 3 Tu 1 . - CDS 1220 - 2791 1315 ## COG2721 Altronate dehydratase - Prom 2992 - 3051 6.9 + Prom 3015 - 3074 6.5 5 4 Op 1 6/0.000 + CDS 3166 - 4500 1723 ## COG0477 Permeases of the major facilitator superfamily 6 4 Op 2 1/1.000 + CDS 4516 - 5286 814 ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 7 4 Op 3 1/1.000 + CDS 5316 - 6206 1201 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 8 4 Op 4 . + CDS 6303 - 7448 1015 ## COG1929 Glycerate kinase Predicted protein(s) >gi|223713545|gb|ACDM01000053.1| GENE 1 35 - 217 159 60 aa, chain + ## HITS:1 COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 60 210 269 269 111 100.0 3e-25 MCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE >gi|223713545|gb|ACDM01000053.1| GENE 2 272 - 736 249 154 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_3612 NR:ns ## KEGG: ECUMN_3612 # Name: yhaV # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 154 1 154 154 308 99.0 3e-83 MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHI TVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTY GKKTDAYTVFSKMLKRGHPPADWETLTRETEETH >gi|223713545|gb|ACDM01000053.1| GENE 3 736 - 1071 260 111 aa, chain - ## HITS:1 COG:sohA KEGG:ns NR:ns ## COG: sohA COG2002 # Protein_GI_number: 16131021 # Func_class: K Transcription # Function: Regulators of stationary/sporulation gene expression # Organism: Escherichia coli K12 # 1 111 1 111 111 216 100.0 8e-57 MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDE QEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE >gi|223713545|gb|ACDM01000053.1| GENE 4 1220 - 2791 1315 523 aa, chain - ## HITS:1 COG:yhaG KEGG:ns NR:ns ## COG: yhaG COG2721 # Protein_GI_number: 16131020 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1 523 1 523 523 1059 100.0 0 MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDI PANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTF EGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCG VAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASI VSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTAN PAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGK TDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDF VCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEE TIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT >gi|223713545|gb|ACDM01000053.1| GENE 5 3166 - 4500 1723 444 aa, chain + ## HITS:1 COG:ECs4005 KEGG:ns NR:ns ## COG: ECs4005 COG0477 # Protein_GI_number: 15833259 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 444 1 444 444 828 100.0 0 MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFS AFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRF MLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHV FTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKL HYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGF AGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFG KGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALVFVG CSALMAMVCYLFVVGDIKRMELQK >gi|223713545|gb|ACDM01000053.1| GENE 6 4516 - 5286 814 256 aa, chain + ## HITS:1 COG:yhaF KEGG:ns NR:ns ## COG: yhaF COG3836 # Protein_GI_number: 16131018 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Escherichia coli K12 # 1 256 1 256 256 503 100.0 1e-142 MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIP QLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGI RGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDL AAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDL GVFRSATQKLADTFKK >gi|223713545|gb|ACDM01000053.1| GENE 7 5316 - 6206 1201 296 aa, chain + ## HITS:1 COG:ECs4003 KEGG:ns NR:ns ## COG: ECs4003 COG2084 # Protein_GI_number: 15833257 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli O157:H7 # 1 296 4 299 299 513 100.0 1e-145 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCD VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDA PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA LNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK DLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR >gi|223713545|gb|ACDM01000053.1| GENE 8 6303 - 7448 1015 381 aa, chain + ## HITS:1 COG:yhaD KEGG:ns NR:ns ## COG: yhaD COG1929 # Protein_GI_number: 16131016 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Escherichia coli K12 # 1 381 28 408 408 674 100.0 0 MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGAE RHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAEKRDPLVTTSRGTGELILQ ALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNEIGFGGGSLNTLNDIDISGLD PRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAMIVELDNNLSHYAEVIKKALHVD VKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSI HGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYD NICRASRNIAATLAIGMRNAG Prediction of potential genes in microbial genomes Time: Mon May 16 19:07:07 2011 Seq name: gi|223713544|gb|ACDM01000054.1| Escherichia sp. 4_1_40B cont1.54, whole genome shotgun sequence Length of sequence - 81669 bp Number of predicted genes - 73, with homology - 73 Number of transcription units - 41, operones - 19 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 283 - 1470 500 ## ECIAI1_3270 hypothetical protein 2 1 Op 2 . - CDS 1492 - 2031 79 ## EcE24377A_3595 hypothetical protein - Prom 2067 - 2126 3.5 + Prom 2617 - 2676 8.0 3 2 Op 1 4/0.474 + CDS 2820 - 3758 720 ## COG0583 Transcriptional regulator + Prom 3767 - 3826 4.9 4 2 Op 2 4/0.474 + CDS 3857 - 4846 1026 ## COG1171 Threonine dehydratase 5 2 Op 3 3/0.842 + CDS 4868 - 6199 1440 ## COG0814 Amino acid permeases 6 2 Op 4 3/0.842 + CDS 6225 - 7433 1081 ## COG0282 Acetate kinase 7 2 Op 5 1/0.895 + CDS 7467 - 9761 2607 ## COG1882 Pyruvate-formate lyase 8 2 Op 6 1/0.895 + CDS 9775 - 10164 382 ## COG0251 Putative translation initiation inhibitor, yjgF family 9 2 Op 7 10/0.158 + CDS 10236 - 11600 1199 ## COG1760 L-serine deaminase + Term 11625 - 11654 2.1 + Prom 11630 - 11689 4.8 10 3 Op 1 3/0.842 + CDS 11875 - 13206 1396 ## COG0814 Amino acid permeases 11 3 Op 2 . + CDS 13234 - 14544 1223 ## COG3681 Uncharacterized conserved protein + Term 14564 - 14597 -0.5 12 4 Op 1 . - CDS 14678 - 14842 209 ## EC55989_3525 hypothetical protein 13 4 Op 2 . - CDS 14865 - 15566 656 ## COG1741 Pirin-related protein - Prom 15624 - 15683 1.7 14 5 Tu 1 . + CDS 15671 - 16567 918 ## COG0583 Transcriptional regulator + Term 16590 - 16621 3.2 - Term 16577 - 16607 3.0 15 6 Tu 1 6/0.211 - CDS 16618 - 16974 347 ## COG3152 Predicted membrane protein - Prom 17123 - 17182 6.4 - Term 17168 - 17202 3.5 16 7 Tu 1 4/0.474 - CDS 17216 - 17581 325 ## COG3152 Predicted membrane protein - Prom 17622 - 17681 5.2 - Term 17789 - 17827 4.1 17 8 Op 1 3/0.842 - CDS 17875 - 18861 1046 ## COG0435 Predicted glutathione S-transferase - Term 18874 - 18903 2.1 18 8 Op 2 . - CDS 18931 - 19413 493 ## COG2259 Predicted membrane protein - Prom 19434 - 19493 1.8 - Term 19469 - 19499 3.4 19 9 Op 1 . - CDS 19509 - 19808 396 ## JW3071 conserved hypothetical protein 20 9 Op 2 7/0.158 - CDS 19798 - 20202 412 ## COG5393 Predicted membrane protein 21 9 Op 3 . - CDS 20205 - 20510 470 ## COG4575 Uncharacterized conserved protein 22 9 Op 4 . - CDS 20548 - 20931 444 ## SSON_3256 hypothetical protein - Prom 20997 - 21056 4.1 - Term 20961 - 20999 6.4 23 10 Op 1 . - CDS 21063 - 21431 244 ## B21_02916 hypothetical protein 24 10 Op 2 . - CDS 21450 - 22112 599 ## COG0586 Uncharacterized membrane-associated protein - Prom 22281 - 22340 6.0 - Term 22410 - 22445 4.1 25 11 Tu 1 . - CDS 22457 - 23248 981 ## COG2186 Transcriptional regulators - Prom 23278 - 23337 3.3 - Term 23301 - 23331 3.0 26 12 Tu 1 . - CDS 23363 - 24661 1860 ## COG0477 Permeases of the major facilitator superfamily - Prom 24899 - 24958 3.0 + Prom 24978 - 25037 3.3 27 13 Op 1 3/0.842 + CDS 25144 - 26556 1674 ## COG1904 Glucuronate isomerase 28 13 Op 2 . + CDS 26571 - 28058 1557 ## COG2721 Altronate dehydratase + Term 28085 - 28121 6.4 29 14 Tu 1 . + CDS 28141 - 28692 260 ## ECUMN_3574 conserved hypothetical protein; putative inner membrane protein - Term 28652 - 28688 7.1 30 15 Tu 1 . - CDS 28697 - 29941 1382 ## COG3633 Na+/serine symporter - Prom 30065 - 30124 6.7 - Term 30239 - 30292 1.2 31 16 Tu 1 . - CDS 30340 - 31305 1237 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 31514 - 31573 6.7 - Term 31510 - 31562 6.6 32 17 Op 1 3/0.842 - CDS 31588 - 32592 731 ## COG0673 Predicted dehydrogenases and related proteins 33 17 Op 2 3/0.842 - CDS 32653 - 33345 513 ## COG2949 Uncharacterized membrane protein 34 17 Op 3 . - CDS 33422 - 33925 453 ## COG1451 Predicted metal-dependent hydrolase - Prom 33981 - 34040 2.0 + Prom 33906 - 33965 4.6 35 18 Tu 1 . + CDS 34010 - 35146 451 ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative + Term 35365 - 35403 10.2 + Prom 35346 - 35405 5.2 36 19 Op 1 6/0.211 + CDS 35430 - 35744 185 ## COG4680 Uncharacterized protein conserved in bacteria 37 19 Op 2 . + CDS 35741 - 36157 278 ## COG5499 Predicted transcription regulator containing HTH domain - Term 36146 - 36192 5.6 38 20 Tu 1 . - CDS 36202 - 38220 1853 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 38261 - 38320 7.2 39 21 Op 1 . - CDS 38646 - 40997 2646 ## JW3051 predicted glycosyl hydrolase 40 21 Op 2 . - CDS 41014 - 42084 1005 ## B21_02898 hypothetical protein - Prom 42122 - 42181 6.7 - Term 42138 - 42198 9.3 41 22 Op 1 3/0.842 - CDS 42218 - 43651 1425 ## COG0531 Amino acid transporters 42 22 Op 2 . - CDS 43714 - 44163 398 ## COG2731 Beta-galactosidase, beta subunit 43 22 Op 3 1/0.895 - CDS 44160 - 47252 3015 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 47372 - 47431 3.9 - Term 47377 - 47426 12.3 44 23 Tu 1 . - CDS 47436 - 48419 940 ## COG1609 Transcriptional regulators - Prom 48608 - 48667 4.8 + Prom 48558 - 48617 3.1 45 24 Tu 1 . + CDS 48638 - 48970 483 ## COG0073 EMAP domain + Term 48976 - 49016 8.1 - Term 48963 - 49004 9.1 46 25 Tu 1 . - CDS 49012 - 50301 1420 ## COG4992 Ornithine/acetylornithine aminotransferase 47 26 Tu 1 . + CDS 50809 - 52329 1450 ## COG0840 Methyl-accepting chemotaxis protein - Term 52351 - 52394 3.2 48 27 Tu 1 . - CDS 52482 - 53105 755 ## COG1695 Predicted transcriptional regulators - Prom 53131 - 53190 7.5 + Prom 53290 - 53349 5.7 49 28 Tu 1 . + CDS 53393 - 54157 759 ## COG2375 Siderophore-interacting protein + Term 54178 - 54211 5.4 - TRNA 54211 - 54286 93.9 # Met CAT 0 0 + Prom 54330 - 54389 6.7 50 29 Tu 1 . + CDS 54411 - 54917 425 ## COG3663 G:T/U mismatch-specific DNA glycosylase + Term 54922 - 54952 2.6 - Term 54908 - 54940 3.0 51 30 Op 1 31/0.000 - CDS 54996 - 56837 2385 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 52 30 Op 2 8/0.158 - CDS 57032 - 58777 1355 ## COG0358 DNA primase (bacterial type) - Prom 58800 - 58859 3.0 - Term 58801 - 58841 6.1 53 31 Tu 1 . - CDS 58888 - 59103 357 ## PROTEIN SUPPORTED gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21 - Prom 59239 - 59298 6.3 + Prom 59258 - 59317 4.0 54 32 Tu 1 . + CDS 59341 - 60354 660 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase - Term 60186 - 60221 -0.7 55 33 Op 1 3/0.842 - CDS 60397 - 61860 1585 ## COG0471 Di- and tricarboxylate transporters - Term 61869 - 61900 1.7 56 33 Op 2 11/0.000 - CDS 61908 - 62537 248 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase 57 33 Op 3 . - CDS 62510 - 63418 262 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase - Prom 63502 - 63561 3.5 + Prom 63443 - 63502 3.9 58 34 Tu 1 . + CDS 63628 - 64560 850 ## COG0583 Transcriptional regulator 59 35 Tu 1 . - CDS 64573 - 65190 543 ## COG0344 Predicted membrane protein - Prom 65294 - 65353 1.8 60 36 Op 1 4/0.474 + CDS 65295 - 65663 409 ## COG1539 Dihydroneopterin aldolase 61 36 Op 2 . + CDS 65753 - 66574 999 ## COG1968 Uncharacterized bacitracin resistance protein - Term 66644 - 66688 4.1 62 37 Op 1 . - CDS 66755 - 66958 77 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 63 37 Op 2 7/0.158 - CDS 67007 - 67993 968 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 64 37 Op 3 . - CDS 68057 - 68677 711 ## COG3103 SH3 domain protein - Prom 68704 - 68763 2.2 + Prom 68788 - 68847 2.6 65 38 Op 1 5/0.263 + CDS 68919 - 70220 1521 ## COG3025 Uncharacterized conserved protein 66 38 Op 2 5/0.263 + CDS 70243 - 73083 3021 ## COG1391 Glutamine synthetase adenylyltransferase 67 38 Op 3 . + CDS 73131 - 74564 1747 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase + Term 74763 - 74794 3.2 - Term 75300 - 75345 5.4 68 39 Op 1 . - CDS 75358 - 77019 1788 ## COG2268 Uncharacterized protein conserved in bacteria 69 39 Op 2 . - CDS 77061 - 77675 236 ## B21_02870 hypothetical protein - Prom 77800 - 77859 6.2 + Prom 77791 - 77850 6.9 70 40 Tu 1 . + CDS 77944 - 78144 199 ## SSON_3186 glycogen synthesis protein GlgS + Term 78145 - 78183 3.5 - Term 78138 - 78165 1.5 71 41 Op 1 . - CDS 78187 - 79251 444 ## B21_02868 hypothetical protein 72 41 Op 2 10/0.158 - CDS 79253 - 80002 463 ## COG3121 P pilus assembly protein, chaperone PapD 73 41 Op 3 . - CDS 80018 - 81667 874 ## COG3188 P pilus assembly protein, porin PapC Predicted protein(s) >gi|223713544|gb|ACDM01000054.1| GENE 1 283 - 1470 500 395 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_3270 NR:ns ## KEGG: ECIAI1_3270 # Name: yhaC # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 395 1 395 395 679 96.0 0 MFPVSSIGNDISSDLVRRKMNDLPESPTGNNLEALAPGIEKLKQTSIEMVTLLNTLQPGG KCIITGDFQKELAYLQNVILYNVSSLRLDFLGYNAQIIQRSDNTCELTINEPLKNQEIST GNININCPLKDIYNEIRRLNVIFSCGTGDIVDLSSLDLRNVDLDYYDFTDKHMANTILNP FKLNSTNFTNANMFQVNFVSSTQNATISWDYLLKITPVLISISDMYSEEKIKFVESCLNE PGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKEIYKSSSKIINCLNRIKLPEMKEFS SEKIYDYIDIIIEDYENIKENAYLVVPQINYTMDLNIEDSSSEELLSDNTLEKDENSPDN GFEVGEYNTYEAYNSEKQYFTREDYTYDYDLLNAI >gi|223713544|gb|ACDM01000054.1| GENE 2 1492 - 2031 79 179 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_3595 NR:ns ## KEGG: EcE24377A_3595 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 179 8 186 186 363 100.0 1e-99 MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVL SAITALNFYHGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCS AVNKKELECIKETISKYCAKFTRKEAILTPLVHFNKTSITSDCWQILFFSPDHFNNDFY >gi|223713544|gb|ACDM01000054.1| GENE 3 2820 - 3758 720 312 aa, chain + ## HITS:1 COG:ECs3998 KEGG:ns NR:ns ## COG: ECs3998 COG0583 # Protein_GI_number: 15833252 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 312 1 312 312 593 100.0 1e-169 MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTG VTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFK EVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKS RTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNA DFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY NGCRRRQLIEVG >gi|223713544|gb|ACDM01000054.1| GENE 4 3857 - 4846 1026 329 aa, chain + ## HITS:1 COG:ECs3997 KEGG:ns NR:ns ## COG: ECs3997 COG1171 # Protein_GI_number: 15833251 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1 329 1 329 329 590 100.0 1e-169 MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIR GAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY SAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVI VPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDV SRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQY IQNRKTVSIISGGNIDLSRVSQITGFVDA >gi|223713544|gb|ACDM01000054.1| GENE 5 4868 - 6199 1440 443 aa, chain + ## HITS:1 COG:ECs3996 KEGG:ns NR:ns ## COG: ECs3996 COG0814 # Protein_GI_number: 15833250 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 443 1 443 443 795 100.0 0 MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAY PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTIT NTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL SLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYE KDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANH FASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSL GKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG RLDNVFVTVIGLLTILNIVYKLF >gi|223713544|gb|ACDM01000054.1| GENE 6 6225 - 7433 1081 402 aa, chain + ## HITS:1 COG:tdcD KEGG:ns NR:ns ## COG: tdcD COG0282 # Protein_GI_number: 16131008 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Escherichia coli K12 # 1 402 5 406 406 790 100.0 0 MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSY EGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNY ANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHR YVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDV DFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTF VHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGLEIDTEMNNRSNSC GERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA >gi|223713544|gb|ACDM01000054.1| GENE 7 7467 - 9761 2607 764 aa, chain + ## HITS:1 COG:ECs3994 KEGG:ns NR:ns ## COG: ECs3994 COG1882 # Protein_GI_number: 15833248 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli O157:H7 # 1 764 1 764 764 1582 99.0 0 MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWE KVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGI NMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRG RIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQE MAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGV LNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFR YLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYA IACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKV MDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDS LSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYR NAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLP FTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREML LDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL >gi|223713544|gb|ACDM01000054.1| GENE 8 9775 - 10164 382 129 aa, chain + ## HITS:1 COG:tdcF KEGG:ns NR:ns ## COG: tdcF COG0251 # Protein_GI_number: 16131006 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1 129 22 150 150 249 100.0 1e-66 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAI VVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLE IEAIAVRSA >gi|223713544|gb|ACDM01000054.1| GENE 9 10236 - 11600 1199 454 aa, chain + ## HITS:1 COG:ECs3992 KEGG:ns NR:ns ## COG: ECs3992 COG1760 # Protein_GI_number: 15833246 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli O157:H7 # 1 454 1 454 454 902 99.0 0 MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGH ATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEML PRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKM CDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRA VALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYY DKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGG SPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVS LDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG >gi|223713544|gb|ACDM01000054.1| GENE 10 11875 - 13206 1396 443 aa, chain + ## HITS:1 COG:ECs3991 KEGG:ns NR:ns ## COG: ECs3991 COG0814 # Protein_GI_number: 15833245 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 443 1 443 443 786 99.0 0 MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQV GLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYF VMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKI STGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSP MVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISA LAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKI NENLVQRGIIIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYK GMSLYLIIVTGLLLCVSPFLAFS >gi|223713544|gb|ACDM01000054.1| GENE 11 13234 - 14544 1223 436 aa, chain + ## HITS:1 COG:yhaN+M KEGG:ns NR:ns ## COG: yhaN+M COG3681 # Protein_GI_number: 16132252 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 436 1 436 436 753 100.0 0 MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLM KNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKI QEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDGVVFTQQACVAEGEQESPLTV LSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLL AKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLAR ALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSG MICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSM QQTDRQIIEIMASKAR >gi|223713544|gb|ACDM01000054.1| GENE 12 14678 - 14842 209 54 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3525 NR:ns ## KEGG: EC55989_3525 # Name: yhaL # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 54 1 54 54 65 98.0 7e-10 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA >gi|223713544|gb|ACDM01000054.1| GENE 13 14865 - 15566 656 233 aa, chain - ## HITS:1 COG:yhaK KEGG:ns NR:ns ## COG: yhaK COG1741 # Protein_GI_number: 16131001 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1 233 1 233 233 474 100.0 1e-134 MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYP KVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLD ACPQRENPLIQKLALNMGKQQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPR AYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV >gi|223713544|gb|ACDM01000054.1| GENE 14 15671 - 16567 918 298 aa, chain + ## HITS:1 COG:ECs3987 KEGG:ns NR:ns ## COG: ECs3987 COG0583 # Protein_GI_number: 15833241 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 298 1 298 298 553 100.0 1e-157 MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLA AKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNGK >gi|223713544|gb|ACDM01000054.1| GENE 15 16618 - 16974 347 118 aa, chain - ## HITS:1 COG:ECs3986 KEGG:ns NR:ns ## COG: ECs3986 COG3152 # Protein_GI_number: 15833240 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 118 1 118 118 220 100.0 5e-58 MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATF LPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYGNDPKFGSN >gi|223713544|gb|ACDM01000054.1| GENE 16 17216 - 17581 325 121 aa, chain - ## HITS:1 COG:ECs3985 KEGG:ns NR:ns ## COG: ECs3985 COG3152 # Protein_GI_number: 15833239 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 121 1 121 121 223 100.0 5e-59 MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYG ILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLE P >gi|223713544|gb|ACDM01000054.1| GENE 17 17875 - 18861 1046 328 aa, chain - ## HITS:1 COG:yqjG KEGG:ns NR:ns ## COG: yqjG COG0435 # Protein_GI_number: 16130997 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted glutathione S-transferase # Organism: Escherichia coli K12 # 1 328 1 328 328 662 100.0 0 MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVS LACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLY LHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKID ELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADI RLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSH KTINPTGIISIGPWQDLDEPHGRDVRFG >gi|223713544|gb|ACDM01000054.1| GENE 18 18931 - 19413 493 160 aa, chain - ## HITS:1 COG:ECs3983 KEGG:ns NR:ns ## COG: ECs3983 COG2259 # Protein_GI_number: 15833237 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 160 1 160 160 273 99.0 8e-74 MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITG YAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNF AEGVNSLMLMKNLTISGGFLLLAITGPGAYSIDRLLNKKW >gi|223713544|gb|ACDM01000054.1| GENE 19 19509 - 19808 396 99 aa, chain - ## HITS:1 COG:no KEGG:JW3071 NR:ns ## KEGG: JW3071 # Name: yqjK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 99 1 99 99 140 100.0 1e-32 MSSKVERERRKAQLLSQIQQQRLDLSASRREWLETTGAYDRRWNMLLSLRSWALVGSSVM AIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG >gi|223713544|gb|ACDM01000054.1| GENE 20 19798 - 20202 412 134 aa, chain - ## HITS:1 COG:STM3230 KEGG:ns NR:ns ## COG: STM3230 COG5393 # Protein_GI_number: 16766529 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 130 1 130 132 198 89.0 2e-51 MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLF AAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHEL ANDRQLLEEESREQ >gi|223713544|gb|ACDM01000054.1| GENE 21 20205 - 20510 470 101 aa, chain - ## HITS:1 COG:ECs3980 KEGG:ns NR:ns ## COG: ECs3980 COG4575 # Protein_GI_number: 15833234 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 101 1 101 101 150 100.0 4e-37 MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDA IAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR >gi|223713544|gb|ACDM01000054.1| GENE 22 20548 - 20931 444 127 aa, chain - ## HITS:1 COG:no KEGG:SSON_3256 NR:ns ## KEGG: SSON_3256 # Name: yqjC # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 127 1 127 127 158 99.0 6e-38 MEGSRMKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQNRIDGLNKALS EVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAKRERKLAEAQEELK KLEARDY >gi|223713544|gb|ACDM01000054.1| GENE 23 21063 - 21431 244 122 aa, chain - ## HITS:1 COG:no KEGG:B21_02916 NR:ns ## KEGG: B21_02916 # Name: yqjB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 122 6 127 127 209 100.0 2e-53 MSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIP FKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHR FG >gi|223713544|gb|ACDM01000054.1| GENE 24 21450 - 22112 599 220 aa, chain - ## HITS:1 COG:STM3226 KEGG:ns NR:ns ## COG: STM3226 COG0586 # Protein_GI_number: 16766525 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 372 95.0 1e-103 MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG >gi|223713544|gb|ACDM01000054.1| GENE 25 22457 - 23248 981 263 aa, chain - ## HITS:1 COG:ECs3976 KEGG:ns NR:ns ## COG: ECs3976 COG2186 # Protein_GI_number: 15833230 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 263 1 263 263 511 100.0 1e-145 MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIM LEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQLIESNIAEFAATQ VTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALAAIVEKMWTQRSHNPY WKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEF NADRYLFAENPVVHLDTATSGSK >gi|223713544|gb|ACDM01000054.1| GENE 26 23363 - 24661 1860 432 aa, chain - ## HITS:1 COG:ECs3975 KEGG:ns NR:ns ## COG: ECs3975 COG0477 # Protein_GI_number: 15833229 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 432 41 472 472 788 100.0 0 MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNISTQQYSYIIAAYSAAYTV MQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLAVARGAVGAAEAAMIPAGL KASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGALSFIWAMA WLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKMSVGQILRNRQFWGIALPRFLAE PAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCILGGYLPPLFQRWFGVNLIV SRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCIGGFAHQALSGALITLSSDVFGRNEVA TANGLTGMSAWLASTLFALVVGALADTIGFSPLFAVLAVFDLLGALVIWTVLQNKPAIEV AQETHNDPAPQH >gi|223713544|gb|ACDM01000054.1| GENE 27 25144 - 26556 1674 470 aa, chain + ## HITS:1 COG:uxaC KEGG:ns NR:ns ## COG: uxaC COG1904 # Protein_GI_number: 16130987 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Escherichia coli K12 # 1 470 1 470 470 993 100.0 0 MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAEDYRFKNLYDIWLKGDHY KWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLS PSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDPIDSLEHHAEIAKDGSFTIKV LPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADLQTALTKRLDHFAAHGCKVSDHA LDVVMFAEANEAELDSILARRLAGETLSEHEVAQFKTAVLVFLGAEYARRGWVQQYHIGA LRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLLSKQNEENLLPKTILYCLNPRDNEVLG TMIGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQLAQLGLLSRFVGMLTDSRSFLSYT RHEYFRRILCQMIGRWVEAGEAPADINLLGEMVKNICFNNARDYFAIELN >gi|223713544|gb|ACDM01000054.1| GENE 28 26571 - 28058 1557 495 aa, chain + ## HITS:1 COG:uxaA KEGG:ns NR:ns ## COG: uxaA COG2721 # Protein_GI_number: 16130986 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1 495 1 495 495 1023 100.0 0 MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKFALTDIAKGANVIKYGL PIGYALADIAAGVHVHAHNTRTNLSDLDQYRYQPDFQDLPAQAADREVQIYRRANGDVGV RNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLFSHTYGCSQLGDDHINTRTML QNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPERVHFMICQQQDDEIEAGIEHLHQ LYNVMRNDKREPGKLSELKFGLECGGSDGLSGITANPMLGRFSDYVIANGGTTVLTEVPE MFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEDKSL GCTQKAGSSVVVDVLRYGERLKTPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPY GGFVPTVKIATNSELAAKKKHWIDFDAGQLIHGKAMPQLLEEFIDTIVEFANGKQTCNER NDFRELAIFKSGVTL >gi|223713544|gb|ACDM01000054.1| GENE 29 28141 - 28692 260 183 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3574 NR:ns ## KEGG: ECUMN_3574 # Name: ygjV # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 183 1 183 183 350 100.0 1e-95 MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILN AIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFRCKGLTMRC VMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVD ERG >gi|223713544|gb|ACDM01000054.1| GENE 30 28697 - 29941 1382 414 aa, chain - ## HITS:1 COG:ECs3971 KEGG:ns NR:ns ## COG: ECs3971 COG3633 # Protein_GI_number: 15833225 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Escherichia coli O157:H7 # 1 414 1 414 414 700 100.0 0 MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPI LVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDIS PPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNA VTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWW KIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINM AGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFG ISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN >gi|223713544|gb|ACDM01000054.1| GENE 31 30340 - 31305 1237 321 aa, chain - ## HITS:1 COG:ECs3970 KEGG:ns NR:ns ## COG: ECs3970 COG0861 # Protein_GI_number: 15833224 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 550 99.0 1e-156 MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFW WYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVL GAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGH LRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTS NLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFIGIKMLIVDFYHIPIAVSLGVVFGI LVMTFIINAWVNYRHDKQRGG >gi|223713544|gb|ACDM01000054.1| GENE 32 31588 - 32592 731 334 aa, chain - ## HITS:1 COG:ygjR KEGG:ns NR:ns ## COG: ygjR COG0673 # Protein_GI_number: 16130982 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 334 1 334 334 664 100.0 0 MEYPRVMIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTS LEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQ VVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSN GSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDS VLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHL VDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL >gi|223713544|gb|ACDM01000054.1| GENE 33 32653 - 33345 513 230 aa, chain - ## HITS:1 COG:ygjQ KEGG:ns NR:ns ## COG: ygjQ COG2949 # Protein_GI_number: 16130981 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli K12 # 1 230 1 230 230 470 100.0 1e-133 MLRAFARLLLRICFSRRTLKIACLLLLVAGATILIADRVMVNASKQLTWSDVNAVPARNV GLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDEASGMQQALIAKGVPA KVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWLAKQYGIDAIGFNAPDLN MKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPFSEHGCPAQK >gi|223713544|gb|ACDM01000054.1| GENE 34 33422 - 33925 453 167 aa, chain - ## HITS:1 COG:ygjP KEGG:ns NR:ns ## COG: ygjP COG1451 # Protein_GI_number: 16130980 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 167 13 179 179 334 100.0 4e-92 MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLR NAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKVEIRVATVFRNAPEPFLRMIVV HELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQNKI >gi|223713544|gb|ACDM01000054.1| GENE 35 34010 - 35146 451 378 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 13 371 18 368 371 178 33 9e-44 MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSC ALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPKTLAL LEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNE PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTI ATNNKFVVLKAVKLGRRR >gi|223713544|gb|ACDM01000054.1| GENE 36 35430 - 35744 185 104 aa, chain + ## HITS:1 COG:ECs3965 KEGG:ns NR:ns ## COG: ECs3965 COG4680 # Protein_GI_number: 15833219 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 104 1 104 104 192 100.0 2e-49 MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVF NVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK >gi|223713544|gb|ACDM01000054.1| GENE 37 35741 - 36157 278 138 aa, chain + ## HITS:1 COG:ygjM KEGG:ns NR:ns ## COG: ygjM COG5499 # Protein_GI_number: 16130977 # Func_class: K Transcription # Function: Predicted transcription regulator containing HTH domain # Organism: Escherichia coli K12 # 1 138 1 138 138 259 100.0 1e-69 MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAW EESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLE HAKKLATRFGISPALFID >gi|223713544|gb|ACDM01000054.1| GENE 38 36202 - 38220 1853 672 aa, chain - ## HITS:1 COG:fadH_1 KEGG:ns NR:ns ## COG: fadH_1 COG1902 # Protein_GI_number: 16130976 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1 354 1 354 354 729 100.0 0 MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGI APDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSAL QAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQR SDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEA AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL SRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRA CHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIP GKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDHPK VLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQ AGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI DDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARR AIAQGTRLALEI >gi|223713544|gb|ACDM01000054.1| GENE 39 38646 - 40997 2646 783 aa, chain - ## HITS:1 COG:no KEGG:JW3051 NR:ns ## KEGG: JW3051 # Name: ygjK # Def: predicted glycosyl hydrolase # Organism: E.coli_J # Pathway: not_defined # 1 783 1 783 783 1592 100.0 0 MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGA WHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALV QKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIA GEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATP EQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNP DIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAW SVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLF TVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKY VANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEA KRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFN GAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFF RKQ >gi|223713544|gb|ACDM01000054.1| GENE 40 41014 - 42084 1005 356 aa, chain - ## HITS:1 COG:no KEGG:B21_02898 NR:ns ## KEGG: B21_02898 # Name: ygjJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 356 1 356 356 698 100.0 0 MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYM DLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGI NRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGN FRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITD GTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAK HRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQIFLMQYFYW >gi|223713544|gb|ACDM01000054.1| GENE 41 42218 - 43651 1425 477 aa, chain - ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 477 1 477 477 804 99.0 0 MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFTPFCLIIAE FVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEY IMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQ PADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFI GVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSL LMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQD LMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVG FVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD >gi|223713544|gb|ACDM01000054.1| GENE 42 43714 - 44163 398 149 aa, chain - ## HITS:1 COG:ebgC KEGG:ns NR:ns ## COG: ebgC COG2731 # Protein_GI_number: 16130972 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 149 1 149 149 287 100.0 4e-78 MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFT GHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDI HEAYRFICNNAVKKVVLKVTIEDGYFHNK >gi|223713544|gb|ACDM01000054.1| GENE 43 44160 - 47252 3015 1030 aa, chain - ## HITS:1 COG:ebgA KEGG:ns NR:ns ## COG: ebgA COG3250 # Protein_GI_number: 16130971 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1 1030 13 1042 1042 2183 99.0 0 MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVP EAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLS DGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQW ADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAA SPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTL KDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKD LQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQW EKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDA EVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGH YVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIA PVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQ ITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLE DDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQ PNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSG ERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENY PFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDI TLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFF STNLHSENKQ >gi|223713544|gb|ACDM01000054.1| GENE 44 47436 - 48419 940 327 aa, chain - ## HITS:1 COG:ebgR KEGG:ns NR:ns ## COG: ebgR COG1609 # Protein_GI_number: 16130970 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 327 1 327 327 659 100.0 0 MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAV NQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPDIKNVTGILI VGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFI GGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFV ASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV YEKARDGRALPLLVFVPSKLKLRGTTR >gi|223713544|gb|ACDM01000054.1| GENE 45 48638 - 48970 483 110 aa, chain + ## HITS:1 COG:ygjH KEGG:ns NR:ns ## COG: ygjH COG0073 # Protein_GI_number: 16130969 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Escherichia coli K12 # 1 110 1 110 110 194 100.0 3e-50 METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMG KTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV >gi|223713544|gb|ACDM01000054.1| GENE 46 49012 - 50301 1420 429 aa, chain - ## HITS:1 COG:ygjG KEGG:ns NR:ns ## COG: ygjG COG4992 # Protein_GI_number: 16130968 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1 429 68 496 496 863 100.0 0 MKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGG FGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSG TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV PFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMIL DEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHT TTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGML MAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA AMRVSVEEA >gi|223713544|gb|ACDM01000054.1| GENE 47 50809 - 52329 1450 506 aa, chain + ## HITS:1 COG:aer_2 KEGG:ns NR:ns ## COG: aer_2 COG0840 # Protein_GI_number: 16130967 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli K12 # 125 506 1 382 382 674 100.0 0 MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPD MPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATD EEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLPLRWRARGVMTLMFILLAAML WFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQALKVATGERNSVEHLNRSDELG LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMN QMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRIGTITSLIND IAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASADKVQS GSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQKNAEL VEESAQVSAMVKHRASRLEDAVTVLH >gi|223713544|gb|ACDM01000054.1| GENE 48 52482 - 53105 755 207 aa, chain - ## HITS:1 COG:yqjI KEGG:ns NR:ns ## COG: yqjI COG1695 # Protein_GI_number: 16130966 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 207 1 207 207 351 100.0 5e-97 MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRFFGH GELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEG GKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLRVN QSDISDAQIKKIIAVIDRAAFDITQLD >gi|223713544|gb|ACDM01000054.1| GENE 49 53393 - 54157 759 254 aa, chain + ## HITS:1 COG:yqjH KEGG:ns NR:ns ## COG: yqjH COG2375 # Protein_GI_number: 16130965 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Escherichia coli K12 # 1 254 1 254 254 518 100.0 1e-147 MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDGFTSRGFDDHSKLFFPQ PDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVASGWAMQAQP GDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLETLSKLAVKPQVSALVSVRDNA CQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYFIWITGEGKVVKNLSRRFEAEQY DPQRVRAAAYWHAK >gi|223713544|gb|ACDM01000054.1| GENE 50 54411 - 54917 425 168 aa, chain + ## HITS:1 COG:ygjF KEGG:ns NR:ns ## COG: ygjF COG3663 # Protein_GI_number: 16130964 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Escherichia coli K12 # 1 168 1 168 168 336 100.0 1e-92 MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLL DYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRG AQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR >gi|223713544|gb|ACDM01000054.1| GENE 51 54996 - 56837 2385 613 aa, chain - ## HITS:1 COG:ECs3950 KEGG:ns NR:ns ## COG: ECs3950 COG0568 # Protein_GI_number: 15833204 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1 613 1 613 613 1031 99.0 0 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH PSRSEVLRSFLDD >gi|223713544|gb|ACDM01000054.1| GENE 52 57032 - 58777 1355 581 aa, chain - ## HITS:1 COG:ECs3949 KEGG:ns NR:ns ## COG: ECs3949 COG0358 # Protein_GI_number: 15833203 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Escherichia coli O157:H7 # 1 581 1 581 581 1191 100.0 0 MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYH CFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLM DGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQ SLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH KGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEA RMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLG ILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLP GLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLN HMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK >gi|223713544|gb|ACDM01000054.1| GENE 53 58888 - 59103 357 71 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21 [Escherichia coli O157:H7 EDL933] # 1 71 1 71 71 142 100 7e-33 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL ARENARRTRLY >gi|223713544|gb|ACDM01000054.1| GENE 54 59341 - 60354 660 337 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 3 327 480 813 832 258 44 5e-68 MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ AALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAPM LEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG PLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTD NGAMIAYAGMVRFKAGATADLGVSVRPRWPLAELPAA >gi|223713544|gb|ACDM01000054.1| GENE 55 60397 - 61860 1585 487 aa, chain - ## HITS:1 COG:ygjE KEGG:ns NR:ns ## COG: ygjE COG0471 # Protein_GI_number: 16130959 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1 487 1 487 487 802 100.0 0 MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVIVGLILEPVPGAVVAMV GISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTGYEKTG LGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPPLYQSQ PNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDWFLGML PLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVGALVLW IFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFI SWFGKLLAGSLSGYSPTMVMVALIVVFYLLRYFFASATAYTSALAPMMIAAALAMPEIPL PVFCLMVGAAIGLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLL WMPVVLL >gi|223713544|gb|ACDM01000054.1| GENE 56 61908 - 62537 248 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 1 199 305 504 508 100 30 2e-45 SVSHPERVMKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLN GKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEG CQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGN NLIAENKKLFAERRDPIVEEICEHVHYIK >gi|223713544|gb|ACDM01000054.1| GENE 57 62510 - 63418 262 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 24 300 21 297 508 105 27 2e-45 MSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNMQ KAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDEV NTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFEN ISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNRL GIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTRS AL >gi|223713544|gb|ACDM01000054.1| GENE 58 63628 - 64560 850 310 aa, chain + ## HITS:1 COG:ygiP KEGG:ns NR:ns ## COG: ygiP COG0583 # Protein_GI_number: 16130956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 310 1 310 310 640 100.0 0 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL GKPDEGYQVM >gi|223713544|gb|ACDM01000054.1| GENE 59 64573 - 65190 543 205 aa, chain - ## HITS:1 COG:ECs3942 KEGG:ns NR:ns ## COG: ECs3942 COG0344 # Protein_GI_number: 15833196 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 205 1 205 205 388 100.0 1e-108 MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGATNVLRIGGKGAAVAVLI FDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGFKGGKGVATAFGAIAPIGW DLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVSMLSCLILLRHHDN IQRLWRRQETKIWTKFKRKREKDPE >gi|223713544|gb|ACDM01000054.1| GENE 60 65295 - 65663 409 122 aa, chain + ## HITS:1 COG:folB KEGG:ns NR:ns ## COG: folB COG1539 # Protein_GI_number: 16130954 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Escherichia coli K12 # 1 122 2 123 123 222 100.0 1e-58 MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETV VSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAVARAANVGVIIERGNNLKE NN >gi|223713544|gb|ACDM01000054.1| GENE 61 65753 - 66574 999 273 aa, chain + ## HITS:1 COG:ECs3940 KEGG:ns NR:ns ## COG: ECs3940 COG1968 # Protein_GI_number: 15833194 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Escherichia coli O157:H7 # 1 273 1 273 273 482 100.0 1e-136 MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAV VVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPI NVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATIS GGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGFLTSGDIPMFAVGFITAFVVALI AIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF >gi|223713544|gb|ACDM01000054.1| GENE 62 66755 - 66958 77 67 aa, chain - ## HITS:1 COG:ECs3939 KEGG:ns NR:ns ## COG: ECs3939 COG0617 # Protein_GI_number: 15833193 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli O157:H7 # 1 67 346 412 412 134 98.0 3e-32 MRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKE QRCPKPE >gi|223713544|gb|ACDM01000054.1| GENE 63 67007 - 67993 968 328 aa, chain - ## HITS:1 COG:cca KEGG:ns NR:ns ## COG: cca COG0617 # Protein_GI_number: 16130952 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli K12 # 1 328 1 328 412 674 100.0 0 MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYAL ARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL LRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKE TESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGIHTLMTLSMAA MLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARL VAEFHDLIHTFPMLNPKTIVKLFDSIDA >gi|223713544|gb|ACDM01000054.1| GENE 64 68057 - 68677 711 206 aa, chain - ## HITS:1 COG:ECs3938 KEGG:ns NR:ns ## COG: ECs3938 COG3103 # Protein_GI_number: 15833192 # Func_class: T Signal transduction mechanisms # Function: SH3 domain protein # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 348 100.0 4e-96 MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHYRLVGTVNAGEEVTLLQ TDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQVKTLTDKLTNIDNTWNQRT AEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASVQLDDKQRTIIMQWFMYGGGV LGLGLLLGLVLPHLIPSRKRKDRWMN >gi|223713544|gb|ACDM01000054.1| GENE 65 68919 - 70220 1521 433 aa, chain + ## HITS:1 COG:ygiF KEGG:ns NR:ns ## COG: ygiF COG3025 # Protein_GI_number: 16130950 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 433 1 433 433 843 100.0 0 MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRGHDMGLRIRGE NGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEVWPNGELPADLASRVQPLF STDFYREKWLVAVDGSQIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVS QTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELALAQWQYHE ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTA VYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQP LGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQAWLENWQGLHHAIATGQRIEIEHFRNEA NNQEPFWLHSGKR >gi|223713544|gb|ACDM01000054.1| GENE 66 70243 - 73083 3021 946 aa, chain + ## HITS:1 COG:glnE KEGG:ns NR:ns ## COG: glnE COG1391 # Protein_GI_number: 16130949 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Escherichia coli K12 # 1 946 1 946 946 1822 100.0 0 MKPLSSPLQQYWQTVVERLPEPLAEESLSAQAKSVLTFSDFVQDSVIAHPEWLTELESQP PQADEWQHYAAWLQEALCNVSDEAGLMRELRLFRRRIMVRIAWAQTLALVTEESILQQLS YLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAW PEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGFVYRVDMRLRPFGESGPLVLSFA ALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELRAMLRPFVFRRYIDFSVIQSLRNMK GMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLLPTLSAIAELH LLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDELNRARLAWAMDFADWPQLTGA LTAHMTNVRRVFNELIGDDESETQEESLSEQWRELWQDALQEDDTTPVLAHLSEDDRKQV LTLIADFRKELDKRTIGPRGRQVLDHLMPHLLSDVCAREDAAVTLSRITALLVGIVTRTT YLELLSEFPAALKHLISLCAASPMIASQLARYPLLLDELLDPNTLYQPTATDAYRDELRQ YLLRVPEDDEEQQLEALRQFKQAQLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQ AWVQMVARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGER EIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAW TWEHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHR DRFDIKADEGGITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMAL TRAYTTLRDELHHLALQELPGHVSEDCFTAERELVRASWQKWLVEE >gi|223713544|gb|ACDM01000054.1| GENE 67 73131 - 74564 1747 477 aa, chain + ## HITS:1 COG:rfaE KEGG:ns NR:ns ## COG: rfaE COG2870 # Protein_GI_number: 16130948 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Escherichia coli K12 # 1 477 1 477 477 916 100.0 0 MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNI ASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLD FEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKG TDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLL QPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGT STVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYL ANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRL IAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG >gi|223713544|gb|ACDM01000054.1| GENE 68 75358 - 77019 1788 553 aa, chain - ## HITS:1 COG:yqiK KEGG:ns NR:ns ## COG: yqiK COG2268 # Protein_GI_number: 16130947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 553 1 553 553 820 100.0 0 MDDIVNSVPSWMFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIV MPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIATAAQTLG QRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELE SVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALS RKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRILAERQIQETEIDR EQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANLALAEAVS AQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAEMQAAAIVELAEA TRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPAVIEKSVEPMKSIDGIKIIQ VDGLNRGGAAGDANTGNVGGGNLAEQALSAALSYRTQAPLIDSLLNEIGVSGGSLAALTS PLTSTTPVEEKAE >gi|223713544|gb|ACDM01000054.1| GENE 69 77061 - 77675 236 204 aa, chain - ## HITS:1 COG:no KEGG:B21_02870 NR:ns ## KEGG: B21_02870 # Name: yqiJ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 204 1 204 209 397 100.0 1e-110 MILFADYNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLDHYDSITTGHISQALHY LNIGRLPALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLFVVPVSLLFTIIAVHYTGK IVAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGKLTDQFGQIHYLLLEPEEGKI FTKGDKVLIICRLSATRYLAENNP >gi|223713544|gb|ACDM01000054.1| GENE 70 77944 - 78144 199 66 aa, chain + ## HITS:1 COG:no KEGG:SSON_3186 NR:ns ## KEGG: SSON_3186 # Name: glgS # Def: glycogen synthesis protein GlgS # Organism: S.sonnei # Pathway: not_defined # 1 66 1 66 66 126 100.0 2e-28 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR ELELEH >gi|223713544|gb|ACDM01000054.1| GENE 71 78187 - 79251 444 354 aa, chain - ## HITS:1 COG:no KEGG:B21_02868 NR:ns ## KEGG: B21_02868 # Name: yqiI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 354 1 354 354 689 100.0 0 MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEY FMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLP IAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVL PDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSR TIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDG TATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN >gi|223713544|gb|ACDM01000054.1| GENE 72 79253 - 80002 463 249 aa, chain - ## HITS:1 COG:yqiH KEGG:ns NR:ns ## COG: yqiH COG3121 # Protein_GI_number: 16130943 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 249 4 252 252 497 100.0 1e-141 MRYLNTKNIIAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEALKLTNQSKNLPYLAQT WIEDTKGNKSRDFIVTVPPMVRLNPSEQIQIRMITQEKIAQLPKDRETLFYFNVREIPPK TDKKNVMQVTMQHALKLFWRPKAIELEDDGVMTYEKVEIIRRNDGSIRFNNKMPYHVTLG YIGTNGVTMLPQTQSLMVTPFSYANTQFKNVPSTFQVGYINDFGGLSFYEINCPVVNNIC NISVANRDQ >gi|223713544|gb|ACDM01000054.1| GENE 73 80018 - 81667 874 549 aa, chain - ## HITS:1 COG:yqiG KEGG:ns NR:ns ## COG: yqiG COG3188 # Protein_GI_number: 16130942 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 549 273 821 821 1039 99.0 0 TGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEEDGQVTQWQVAS NSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDY QSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFESTGSQLTFAGYR FSDKNFVTMNEYINDTNHYTNYQNEKESYIVTFNQYLESLRLNTYVSLARNTYWDASSNV NYSLSLSRDFDIGPLKNVSTSLTFSRINWEDDNQDQLYLNISIPWGTSRTLSYGMQRNQD NKISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQHNTENGRLYLSGTSQRDS YYSLNASWNGSFTATRHGAAFHDYSGSADSRFMIDADGAEDIPLNNKRAVTNRYGIGVIP SVSSYITTSLSVDTRNLPENVDIENSVITTTLTEGAIGYAKLDTRKGYQIIGVIRLADGS HPPLGISVKDETSHKELGLVADGGFVYLNGIQDDNKLALRWGDKSCFIQPPNSSNLTTGT VILPCISQN Prediction of potential genes in microbial genomes Time: Mon May 16 19:08:25 2011 Seq name: gi|223713543|gb|ACDM01000055.1| Escherichia sp. 4_1_40B cont1.55, whole genome shotgun sequence Length of sequence - 107752 bp Number of predicted genes - 100, with homology - 100 Number of transcription units - 49, operones - 17 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 3 - 864 345 ## COG3188 P pilus assembly protein, porin PapC 2 1 Op 2 . - CDS 915 - 1466 489 ## COG3539 P pilus assembly protein, pilin FimA - Prom 1537 - 1596 9.6 - Term 1684 - 1733 7.1 3 2 Tu 1 . - CDS 1750 - 2040 299 ## COG2960 Uncharacterized protein conserved in bacteria - Prom 2068 - 2127 3.7 4 3 Tu 1 . + CDS 2414 - 3067 785 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase + Term 3099 - 3140 5.0 + Prom 3083 - 3142 5.2 5 4 Tu 1 . + CDS 3329 - 3499 250 ## ECUMN_3528 hypothetical protein + Term 3517 - 3559 10.4 - Term 3416 - 3447 -0.8 6 5 Tu 1 . - CDS 3557 - 4330 900 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 4427 - 4486 3.5 + Prom 4323 - 4382 5.5 7 6 Tu 1 . + CDS 4473 - 5261 838 ## COG3384 Uncharacterized conserved protein - Term 5252 - 5291 9.1 8 7 Op 1 5/0.056 - CDS 5299 - 6459 1211 ## COG0754 Glutathionylspermidine synthase 9 7 Op 2 . - CDS 6465 - 7136 456 ## COG5463 Predicted integral membrane protein - Prom 7164 - 7223 2.5 10 8 Tu 1 . - CDS 7284 - 8765 1675 ## COG1538 Outer membrane protein - Prom 8880 - 8939 6.6 + Prom 8761 - 8820 4.7 11 9 Op 1 8/0.000 + CDS 8970 - 9599 639 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 12 9 Op 2 7/0.000 + CDS 9600 - 10022 181 ## COG3151 Uncharacterized protein conserved in bacteria 13 9 Op 3 7/0.000 + CDS 10047 - 10874 851 ## COG1409 Predicted phosphohydrolases 14 9 Op 4 7/0.000 + CDS 10874 - 11455 481 ## COG3150 Predicted esterase 15 9 Op 5 . + CDS 11484 - 13376 1985 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Term 13376 - 13412 4.2 16 10 Op 1 4/0.167 - CDS 13424 - 13738 419 ## COG1359 Uncharacterized conserved protein 17 10 Op 2 . - CDS 13769 - 14350 701 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Prom 14585 - 14644 6.3 18 11 Tu 1 . + CDS 14771 - 15001 91 ## B21_02849 hypothetical protein + Term 15150 - 15177 -0.8 - Term 14995 - 15038 7.2 19 12 Op 1 40/0.000 - CDS 15047 - 16396 1112 ## COG0642 Signal transduction histidine kinase 20 12 Op 2 . - CDS 16393 - 17025 752 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 17116 - 17175 4.6 + Prom 17073 - 17132 8.5 21 13 Op 1 3/0.389 + CDS 17204 - 17596 526 ## COG3111 Uncharacterized conserved protein 22 13 Op 2 . + CDS 17649 - 18131 451 ## COG3449 DNA gyrase inhibitor + Term 18173 - 18202 -0.9 + Prom 18240 - 18299 4.1 23 14 Op 1 . + CDS 18336 - 18632 272 ## B21_02844 hypothetical protein 24 14 Op 2 1/0.944 + CDS 18634 - 19029 255 ## COG1396 Predicted transcriptional regulators + Term 19036 - 19072 3.3 + Prom 19075 - 19134 2.7 25 15 Tu 1 . + CDS 19162 - 20769 1606 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Prom 20799 - 20858 2.4 26 16 Tu 1 . + CDS 20907 - 23165 2619 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 23311 - 23339 -0.9 + Prom 23261 - 23320 2.3 27 17 Op 1 7/0.000 + CDS 23399 - 24136 646 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 24155 - 24189 2.8 28 17 Op 2 2/0.778 + CDS 24211 - 25623 1230 ## COG2132 Putative multicopper oxidases + Term 25626 - 25670 10.6 + Prom 25646 - 25705 6.3 29 18 Tu 1 . + CDS 25734 - 27953 2195 ## COG1032 Fe-S oxidoreductase + Term 27960 - 28000 -0.9 - Term 27946 - 27987 8.0 30 19 Op 1 . - CDS 27996 - 28253 282 ## COG4238 Murein lipoprotein 31 19 Op 2 . - CDS 28304 - 29230 622 ## B21_02836 hypothetical protein - Prom 29334 - 29393 2.9 - Term 29378 - 29416 7.2 32 20 Tu 1 . - CDS 29430 - 30257 898 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Term 30266 - 30301 7.4 33 21 Tu 1 . - CDS 30362 - 31525 1573 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 31688 - 31747 5.3 34 22 Tu 1 . + CDS 31719 - 32618 855 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 32610 - 32647 7.2 35 23 Tu 1 . - CDS 32658 - 33317 655 ## COG0586 Uncharacterized membrane-associated protein - Prom 33396 - 33455 3.9 36 24 Tu 1 . - CDS 33457 - 34644 1060 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 34796 - 34855 5.0 + Prom 34631 - 34690 2.7 37 25 Op 1 30/0.000 + CDS 34911 - 35630 853 ## COG0811 Biopolymer transport proteins 38 25 Op 2 . + CDS 35637 - 36062 535 ## COG0848 Biopolymer transport protein + Term 36067 - 36109 8.5 - Term 36056 - 36095 7.8 39 26 Tu 1 . - CDS 36101 - 36985 993 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 37145 - 37204 4.1 + Prom 37092 - 37151 3.6 40 27 Tu 1 . + CDS 37176 - 37670 661 ## COG2862 Predicted membrane protein + Term 37678 - 37710 6.1 41 28 Tu 1 . - CDS 37710 - 38750 1072 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 38785 - 38844 1.8 + Prom 38733 - 38792 2.1 42 29 Tu 1 . + CDS 38906 - 39793 940 ## COG0412 Dienelactone hydrolase and related enzymes + Prom 39820 - 39879 3.5 43 30 Tu 1 . + CDS 39912 - 40199 315 ## ECIAI1_3148 hypothetical protein + Prom 40227 - 40286 3.5 44 31 Op 1 4/0.167 + CDS 40388 - 41506 1235 ## COG1740 Ni,Fe-hydrogenase I small subunit 45 31 Op 2 6/0.000 + CDS 41509 - 42495 970 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 46 31 Op 3 4/0.167 + CDS 42485 - 43663 1617 ## COG5557 Polysulphide reductase 47 31 Op 4 5/0.056 + CDS 43660 - 45363 2014 ## COG0374 Ni,Fe-hydrogenase I large subunit 48 31 Op 5 . + CDS 45363 - 45857 594 ## COG0680 Ni,Fe-hydrogenase maturation factor 49 31 Op 6 . + CDS 45850 - 46338 526 ## SSON_3137 hydrogenase 2-specific chaperone 50 31 Op 7 4/0.167 + CDS 46331 - 46672 327 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) 51 31 Op 8 . + CDS 46685 - 46933 389 ## COG0298 Hydrogenase maturation factor - Term 46872 - 46910 2.1 52 32 Tu 1 . - CDS 47003 - 47869 1062 ## COG0625 Glutathione S-transferase - Prom 47896 - 47955 2.6 + Prom 47820 - 47879 3.1 53 33 Tu 1 . + CDS 48074 - 49933 2092 ## COG0754 Glutathionylspermidine synthase - Term 49739 - 49780 1.8 54 34 Tu 1 . - CDS 50021 - 50284 90 ## EcSMS35_3273 hypothetical protein - Prom 50360 - 50419 2.5 + Prom 49979 - 50038 5.1 55 35 Tu 1 . + CDS 50221 - 51720 1421 ## COG0306 Phosphate/sulphate permeases + Term 51727 - 51773 8.1 56 36 Tu 1 . - CDS 51769 - 52461 543 ## ECP_3071 ATP-binding protein YghT - Prom 52485 - 52544 5.7 + Prom 52462 - 52521 5.4 57 37 Op 1 . + CDS 52650 - 53348 344 ## ECP_3070 ATP-binding protein YghS 58 37 Op 2 . + CDS 53380 - 54138 589 ## ECIAI39_3479 conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain 59 37 Op 3 . + CDS 54184 - 55533 920 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 60 37 Op 4 . + CDS 55533 - 56357 464 ## ECIAI39_3477 hypothetical protein 61 37 Op 5 . + CDS 56369 - 56929 492 ## COG3054 Predicted transcriptional regulator 62 37 Op 6 22/0.000 + CDS 56960 - 58030 1017 ## COG0795 Predicted permeases 63 37 Op 7 . + CDS 58027 - 59106 886 ## COG0795 Predicted permeases + Term 59184 - 59215 -0.7 - Term 59092 - 59138 14.8 64 38 Op 1 . - CDS 59141 - 60313 1173 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 65 38 Op 2 . - CDS 60313 - 60561 288 ## S3224 hypothetical protein 66 38 Op 3 2/0.778 - CDS 60593 - 61507 810 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 67 38 Op 4 . - CDS 61504 - 63195 1227 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - Prom 63373 - 63432 7.0 + Prom 63341 - 63400 7.5 68 39 Tu 1 . + CDS 63599 - 64741 961 ## c3711 hypothetical protein 69 40 Tu 1 . - CDS 64817 - 65656 636 ## COG2186 Transcriptional regulators - Prom 65677 - 65736 5.9 + Prom 65630 - 65689 2.3 70 41 Op 1 9/0.000 + CDS 65838 - 67337 1565 ## COG0277 FAD/FMN-containing dehydrogenases 71 41 Op 2 15/0.000 + CDS 67337 - 68389 1075 ## COG0277 FAD/FMN-containing dehydrogenases 72 41 Op 3 1/0.944 + CDS 68400 - 69623 1009 ## COG0247 Fe-S oxidoreductase 73 41 Op 4 1/0.944 + CDS 69628 - 70032 639 ## COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol 74 41 Op 5 1/0.944 + CDS 70054 - 72225 2452 ## COG2225 Malate synthase + Term 72254 - 72299 -0.9 + Prom 72438 - 72497 4.4 75 42 Tu 1 . + CDS 72581 - 74263 1753 ## COG1620 L-lactate permease + Term 74273 - 74311 4.4 76 43 Tu 1 . + CDS 74748 - 79310 4062 ## ECIAI39_3460 inner membrane lipoprotein 77 44 Op 1 . + CDS 79440 - 80249 435 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 78 44 Op 2 . + CDS 80315 - 80725 316 ## JW2938 hypothetical protein 79 44 Op 3 . + CDS 80743 - 81702 701 ## COG3031 Type II secretory pathway, component PulC 80 44 Op 4 6/0.000 + CDS 81732 - 83792 2088 ## COG1450 Type II secretory pathway, component PulD 81 44 Op 5 24/0.000 + CDS 83792 - 85285 1478 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 82 44 Op 6 10/0.000 + CDS 85285 - 86508 1236 ## COG1459 Type II secretory pathway, component PulF 83 44 Op 7 . + CDS 86525 - 86980 621 ## COG2165 Type II secretory pathway, pseudopilin PulG 84 44 Op 8 . + CDS 86984 - 87547 378 ## ECUMN_3440 conserved hypothetical protein; putative exported protein 85 44 Op 9 12/0.000 + CDS 87544 - 87915 348 ## COG2165 Type II secretory pathway, pseudopilin PulG 86 44 Op 10 7/0.000 + CDS 87912 - 88517 351 ## COG4795 Type II secretory pathway, component PulJ 87 44 Op 11 4/0.167 + CDS 88514 - 89494 1007 ## COG3156 Type II secretory pathway, component PulK 88 44 Op 12 2/0.778 + CDS 89500 - 90669 764 ## COG3297 Type II secretory pathway, component PulL 89 44 Op 13 . + CDS 90671 - 91207 552 ## COG3149 Type II secretory pathway, component PulM + Term 91241 - 91302 7.1 + Prom 92116 - 92175 3.8 90 45 Op 1 26/0.000 + CDS 92264 - 93040 565 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 91 45 Op 2 . + CDS 93037 - 93714 171 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 94056 - 94115 8.6 92 46 Tu 1 . + CDS 94330 - 97410 739 ## COG5610 Predicted hydrolase (HAD superfamily) + Term 97419 - 97453 4.0 + Prom 97430 - 97489 2.8 93 47 Tu 1 . + CDS 97529 - 98518 71 ## Pden_2282 TPR repeat-containing protein - Term 98486 - 98526 5.6 94 48 Op 1 5/0.056 - CDS 98596 - 99804 477 ## COG3562 Capsule polysaccharide export protein 95 48 Op 2 . - CDS 99839 - 101866 1013 ## COG3563 Capsule polysaccharide export protein 96 48 Op 3 . - CDS 101863 - 102603 827 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase 97 48 Op 4 4/0.167 - CDS 102613 - 104289 1519 ## COG1596 Periplasmic protein involved in polysaccharide export 98 48 Op 5 . - CDS 104313 - 105461 1128 ## COG3524 Capsule polysaccharide export protein 99 48 Op 6 . - CDS 105533 - 106516 783 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation - Prom 106575 - 106634 5.8 100 49 Tu 1 . - CDS 107315 - 107470 111 ## ECED1_3592 hypothetical protein - Prom 107631 - 107690 4.7 Predicted protein(s) >gi|223713543|gb|ACDM01000055.1| GENE 1 3 - 864 345 287 aa, chain - ## HITS:1 COG:yqiG KEGG:ns NR:ns ## COG: yqiG COG3188 # Protein_GI_number: 16130942 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 26 287 10 271 821 526 96.0 1e-149 MDQMYKKLKLTTISELIKNIYCSLSVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETD GQLPVGKYSLSTLINNKRTPIHLDLQWVLIDNLTAVCVTPEQLTLLGFTDEFIEKTQQTL IDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPPELWDHGIAGAFLDYNLY ASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFNNGKSQANNLDFPRIYLFRP IPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPPDLRGYAPQ >gi|223713543|gb|ACDM01000055.1| GENE 2 915 - 1466 489 183 aa, chain - ## HITS:1 COG:ygiL KEGG:ns NR:ns ## COG: ygiL COG3539 # Protein_GI_number: 16130939 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 183 1 183 183 338 100.0 3e-93 MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADT VLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTMTGQSDLLKNTKETEIGGA TGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKI AYE >gi|223713543|gb|ACDM01000055.1| GENE 3 1750 - 2040 299 96 aa, chain - ## HITS:1 COG:yqiC KEGG:ns NR:ns ## COG: yqiC COG2960 # Protein_GI_number: 16130938 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 96 21 116 116 135 100.0 1e-32 MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLL RTREKLALLEQRISELENRSTEIKKQPDPETLPPTL >gi|223713543|gb|ACDM01000055.1| GENE 4 2414 - 3067 785 217 aa, chain + ## HITS:1 COG:ECs3929 KEGG:ns NR:ns ## COG: ECs3929 COG0108 # Protein_GI_number: 15833183 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 217 1 217 217 412 100.0 1e-115 MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIR HGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRA AIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDG TMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS >gi|223713543|gb|ACDM01000055.1| GENE 5 3329 - 3499 250 56 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3528 NR:ns ## KEGG: ECUMN_3528 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 56 9 64 64 102 100.0 5e-21 MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYLNSTREETAEKVE >gi|223713543|gb|ACDM01000055.1| GENE 6 3557 - 4330 900 257 aa, chain - ## HITS:1 COG:ECs3928 KEGG:ns NR:ns ## COG: ECs3928 COG0428 # Protein_GI_number: 15833182 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Escherichia coli O157:H7 # 1 257 1 257 257 392 100.0 1e-109 MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEMLPAALAAE GMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIKRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLA EILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCG MSVMGFSLVLLQTAGIG >gi|223713543|gb|ACDM01000055.1| GENE 7 4473 - 5261 838 262 aa, chain + ## HITS:1 COG:ygiD KEGG:ns NR:ns ## COG: ygiD COG3384 # Protein_GI_number: 16130935 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 262 10 271 271 511 100.0 1e-145 MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAME TPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQE PITIPVEGIEMGSLSMLSVQIG >gi|223713543|gb|ACDM01000055.1| GENE 8 5299 - 6459 1211 386 aa, chain - ## HITS:1 COG:ECs3926 KEGG:ns NR:ns ## COG: ECs3926 COG0754 # Protein_GI_number: 15833180 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 1 386 1 386 386 790 99.0 0 MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQVEKLEEITAELHQMCL KVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLDLAWDGTGEPKLLENNADT PTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLIDRFVELREQYGFQLLHLTCCR DTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQFTDLQDQVISNLFKLYPWEFML REMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEMFPNHPNLLPAYFAEDDHPQMEKYV VKPIFSREGANVSIIENGKTIEAAEGPYGEEGMIIQQFHPLPKFGDSYMLIGSWLVNDQP AGIGIREDRALITQDMSRFYPHIFVE >gi|223713543|gb|ACDM01000055.1| GENE 9 6465 - 7136 456 223 aa, chain - ## HITS:1 COG:ygiB KEGG:ns NR:ns ## COG: ygiB COG5463 # Protein_GI_number: 16130933 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1 223 12 234 234 360 100.0 1e-99 MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETVSLYQNADDCSAANPGK SAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGS FWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDATGKNYGAAQPGRTMTVP KTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSSRSMGG >gi|223713543|gb|ACDM01000055.1| GENE 10 7284 - 8765 1675 493 aa, chain - ## HITS:1 COG:tolC KEGG:ns NR:ns ## COG: tolC COG1538 # Protein_GI_number: 16130931 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli K12 # 1 493 3 495 495 801 100.0 0 MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPL LPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTY QTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNAR AQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEK RNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSN MGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASI SSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQL NIKSALGTLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIADGYAPDSPAPVVQQTSA RTTTSNGHNPFRN >gi|223713543|gb|ACDM01000055.1| GENE 11 8970 - 9599 639 209 aa, chain + ## HITS:1 COG:ECs3922 KEGG:ns NR:ns ## COG: ECs3922 COG0494 # Protein_GI_number: 15833176 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 209 1 209 209 402 99.0 1e-112 MLKPDSLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAA VLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLI VKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV EEGKIDNAASVIALQWLQLHHQALKNEWA >gi|223713543|gb|ACDM01000055.1| GENE 12 9600 - 10022 181 140 aa, chain + ## HITS:1 COG:ECs3921 KEGG:ns NR:ns ## COG: ECs3921 COG3151 # Protein_GI_number: 15833175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 140 1 140 140 274 100.0 4e-74 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVT IEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQ FLADWLRYCLAHGAMAIPVY >gi|223713543|gb|ACDM01000055.1| GENE 13 10047 - 10874 851 275 aa, chain + ## HITS:1 COG:ECs3920 KEGG:ns NR:ns ## COG: ECs3920 COG1409 # Protein_GI_number: 15833174 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Escherichia coli O157:H7 # 1 275 1 275 275 528 100.0 1e-150 MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQAVLEAIRPHQHEFDLIV ATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGE QWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSL RNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLLATPSTCVQFKPHCSNFTLDTIA PGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY >gi|223713543|gb|ACDM01000055.1| GENE 14 10874 - 11455 481 193 aa, chain + ## HITS:1 COG:ECs3919 KEGG:ns NR:ns ## COG: ECs3919 COG3150 # Protein_GI_number: 15833173 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 390 100.0 1e-109 MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPSDAAELLESIVLEHGG DSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVIEGGNHAFTGFEDY FNPIVDFLGLHHL >gi|223713543|gb|ACDM01000055.1| GENE 15 11484 - 13376 1985 630 aa, chain + ## HITS:1 COG:parE KEGG:ns NR:ns ## COG: parE COG0187 # Protein_GI_number: 16130926 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Escherichia coli K12 # 1 630 1 630 630 1300 100.0 0 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD AMMDMLLAKKRSEDRRNWLQEKGDMAEIEV >gi|223713543|gb|ACDM01000055.1| GENE 16 13424 - 13738 419 104 aa, chain - ## HITS:1 COG:ECs3911 KEGG:ns NR:ns ## COG: ECs3911 COG1359 # Protein_GI_number: 15833165 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 104 1 104 104 199 100.0 9e-52 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQPGI >gi|223713543|gb|ACDM01000055.1| GENE 17 13769 - 14350 701 193 aa, chain - ## HITS:1 COG:ECs3910 KEGG:ns NR:ns ## COG: ECs3910 COG2249 # Protein_GI_number: 15833164 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 400 100.0 1e-112 MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWA DVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYM LSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRY TEEYRKHLVEIFG >gi|223713543|gb|ACDM01000055.1| GENE 18 14771 - 15001 91 76 aa, chain + ## HITS:1 COG:no KEGG:B21_02849 NR:ns ## KEGG: B21_02849 # Name: ygiZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 76 35 110 110 112 100.0 6e-24 MLESGGNICSIPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGIC LVCGWWLFWGRFIFCY >gi|223713543|gb|ACDM01000055.1| GENE 19 15047 - 16396 1112 449 aa, chain - ## HITS:1 COG:ygiY KEGG:ns NR:ns ## COG: ygiY COG0642 # Protein_GI_number: 16130922 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 449 1 449 449 855 100.0 0 MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLMLFAKRLSTLDL NEINAADRMAQTPNRLKHGHVDDDALTFAIFTHDGRMVLNDGDNGEDIPYSYQREGFADG QLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIVAGQLIPWLVALPIMLIIMMV LLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRPLVESLNQLFARTHAMMVRERRF TSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLD SLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNL LDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLS IVQRIAKLHGMNVEFGNAEQGGFEAKVSW >gi|223713543|gb|ACDM01000055.1| GENE 20 16393 - 17025 752 210 aa, chain - ## HITS:1 COG:ECs3907 KEGG:ns NR:ns ## COG: ECs3907 COG0745 # Protein_GI_number: 15833161 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 210 10 219 219 407 99.0 1e-113 MLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREK GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRH GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNA VEVHVHHLRRKLGSDFIRTVHGIGYTLGEK >gi|223713543|gb|ACDM01000055.1| GENE 21 17204 - 17596 526 130 aa, chain + ## HITS:1 COG:ECs3906 KEGG:ns NR:ns ## COG: ECs3906 COG3111 # Protein_GI_number: 15833160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 130 1 130 130 242 99.0 1e-64 MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDSW VTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEI DVKQIRKVNP >gi|223713543|gb|ACDM01000055.1| GENE 22 17649 - 18131 451 160 aa, chain + ## HITS:1 COG:ygiV KEGG:ns NR:ns ## COG: ygiV COG3449 # Protein_GI_number: 16130919 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Escherichia coli K12 # 1 160 1 160 160 331 98.0 3e-91 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA >gi|223713543|gb|ACDM01000055.1| GENE 23 18336 - 18632 272 98 aa, chain + ## HITS:1 COG:no KEGG:B21_02844 NR:ns ## KEGG: B21_02844 # Name: ygiU # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 98 1 98 98 193 100.0 2e-48 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK >gi|223713543|gb|ACDM01000055.1| GENE 24 18634 - 19029 255 131 aa, chain + ## HITS:1 COG:ygiT KEGG:ns NR:ns ## COG: ygiT COG1396 # Protein_GI_number: 16130917 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 131 1 131 131 263 100.0 6e-71 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAF RASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVL DKHPELLNEIR >gi|223713543|gb|ACDM01000055.1| GENE 25 19162 - 20769 1606 535 aa, chain + ## HITS:1 COG:ygiS KEGG:ns NR:ns ## COG: ygiS COG4166 # Protein_GI_number: 16130916 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 535 1 535 535 1060 100.0 0 MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV LDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQR AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQ QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEK PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA MAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR NALYQQAEVIINQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH >gi|223713543|gb|ACDM01000055.1| GENE 26 20907 - 23165 2619 752 aa, chain + ## HITS:1 COG:ECs3903 KEGG:ns NR:ns ## COG: ECs3903 COG0188 # Protein_GI_number: 15833157 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Escherichia coli O157:H7 # 1 752 1 752 752 1462 100.0 0 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILEL KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSN QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGE RGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE >gi|223713543|gb|ACDM01000055.1| GENE 27 23399 - 24136 646 245 aa, chain + ## HITS:1 COG:plsC KEGG:ns NR:ns ## COG: plsC COG0204 # Protein_GI_number: 16130914 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Escherichia coli K12 # 1 245 1 245 245 516 100.0 1e-146 MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPTD AESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNN RTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVS TTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKIAELDKEVAERE AAGKV >gi|223713543|gb|ACDM01000055.1| GENE 28 24211 - 25623 1230 470 aa, chain + ## HITS:1 COG:ECs3901 KEGG:ns NR:ns ## COG: ECs3901 COG2132 # Protein_GI_number: 15833155 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli O157:H7 # 1 470 1 470 470 930 100.0 0 MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRRGQPLFMTVQRAHWSFT PGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMM SPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVD DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSR RYQLQMSDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAAS IVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDISLGD DPGINGQLWDVNRIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGW KDTVWVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP >gi|223713543|gb|ACDM01000055.1| GENE 29 25734 - 27953 2195 739 aa, chain + ## HITS:1 COG:ECs3900 KEGG:ns NR:ns ## COG: ECs3900 COG1032 # Protein_GI_number: 15833154 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1 739 1 739 739 1516 99.0 0 MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDSCDIILVTGDAYVDHPS FGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRR LRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVR RSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIRDVRNTAIIVKEALPGWSGVDST RLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAVTVQPPRPKPWEKTYVLLPSFEKV KGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPYKRV PHPAYGNARIPAYEMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR ARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFY PSPLANSTTMYYTGKNPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALE AMGKKHLIGSRRDCLVPAPTIEEMREARRQNRNTRPALTKHTPMATQRQTPATAKKASST QSRPVNAGAKKRPKAAVGR >gi|223713543|gb|ACDM01000055.1| GENE 30 27996 - 28253 282 85 aa, chain - ## HITS:1 COG:yqhH KEGG:ns NR:ns ## COG: yqhH COG4238 # Protein_GI_number: 16130912 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein lipoprotein # Organism: Escherichia coli K12 # 1 85 1 85 85 149 100.0 2e-36 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE ANRANTRLDAQDYFDCLRCLRMYAE >gi|223713543|gb|ACDM01000055.1| GENE 31 28304 - 29230 622 308 aa, chain - ## HITS:1 COG:no KEGG:B21_02836 NR:ns ## KEGG: B21_02836 # Name: yqhG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 308 1 308 308 608 100.0 1e-172 MKIILLFLAALASFTVHAQPPSQTVEQTVRHIYQNYKSDATAPYFGETGERAITSARIQQ ALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTDADHADAVVRFRIFKDDKE KTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLAALASLQKEQPEAFVAELFEH IADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDMQIERQFIYDNPICFGEESLFSR VDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQRREGKWEIADFIRPNSGSLLKQIEA KTAARLKQ >gi|223713543|gb|ACDM01000055.1| GENE 32 29430 - 30257 898 275 aa, chain - ## HITS:1 COG:STM3165 KEGG:ns NR:ns ## COG: STM3165 COG0656 # Protein_GI_number: 16766465 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 1 275 1 275 275 497 92.0 1e-141 MANPTVIKLQDGNVMPQLGLGVWQASNEEVITAIQKALEVGYRSIDTAAAYKNEEGVGKA LKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYIDLYLMHWPVPAIDHYVEAW KGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHK IQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAE NFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG >gi|223713543|gb|ACDM01000055.1| GENE 33 30362 - 31525 1573 387 aa, chain - ## HITS:1 COG:yqhD KEGG:ns NR:ns ## COG: yqhD COG1979 # Protein_GI_number: 16130909 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Escherichia coli K12 # 1 387 1 387 387 782 100.0 0 MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVL EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHIL QTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYT YTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDV RANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTK RAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKL EEHGMTQLGENHDITLDVSRRIYEAAR >gi|223713543|gb|ACDM01000055.1| GENE 34 31719 - 32618 855 299 aa, chain + ## HITS:1 COG:yqhC KEGG:ns NR:ns ## COG: yqhC COG2207 # Protein_GI_number: 16130908 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 299 77 375 375 597 99.0 1e-171 MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN >gi|223713543|gb|ACDM01000055.1| GENE 35 32658 - 33317 655 219 aa, chain - ## HITS:1 COG:ECs3893 KEGG:ns NR:ns ## COG: ECs3893 COG0586 # Protein_GI_number: 15833147 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 384 100.0 1e-106 MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLPASFLPGDSLLILAGAL IAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGWLAQLPAKYHQRATCMFDR HGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVSVVTSFGYALSMIPF VKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCNA >gi|223713543|gb|ACDM01000055.1| GENE 36 33457 - 34644 1060 395 aa, chain - ## HITS:1 COG:metC KEGG:ns NR:ns ## COG: metC COG0626 # Protein_GI_number: 16130906 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1 395 1 395 395 814 99.0 0 MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRG TLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGDHVLMTNTAYEPSQDFCSK ILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA IIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFW KRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV >gi|223713543|gb|ACDM01000055.1| GENE 37 34911 - 35630 853 239 aa, chain + ## HITS:1 COG:ECs3890 KEGG:ns NR:ns ## COG: ECs3890 COG0811 # Protein_GI_number: 15833144 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Escherichia coli O157:H7 # 1 239 6 244 244 441 100.0 1e-124 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEA RSLNQANDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAAVGRQ MGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGL VAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLLLQSRDLDLEASAAAHPVRVAQKLRAG >gi|223713543|gb|ACDM01000055.1| GENE 38 35637 - 36062 535 141 aa, chain + ## HITS:1 COG:ECs3889 KEGG:ns NR:ns ## COG: ECs3889 COG0848 # Protein_GI_number: 15833143 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 250 99.0 5e-67 MAKHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD TLHQAGYLKIGLVGEETAKAK >gi|223713543|gb|ACDM01000055.1| GENE 39 36101 - 36985 993 294 aa, chain - ## HITS:1 COG:ECs3887 KEGG:ns NR:ns ## COG: ECs3887 COG1028 # Protein_GI_number: 15833141 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 1 294 1 294 294 557 100.0 1e-159 MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSG IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGAS IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG >gi|223713543|gb|ACDM01000055.1| GENE 40 37176 - 37670 661 164 aa, chain + ## HITS:1 COG:ECs3886 KEGG:ns NR:ns ## COG: ECs3886 COG2862 # Protein_GI_number: 15833140 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 164 1 164 164 271 100.0 5e-73 MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPNIFSMAESDLILVLLSL VDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIH LLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLTRHNH >gi|223713543|gb|ACDM01000055.1| GENE 41 37710 - 38750 1072 346 aa, chain - ## HITS:1 COG:yghZ KEGG:ns NR:ns ## COG: yghZ COG0667 # Protein_GI_number: 16130899 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 346 1 346 346 689 99.0 0 MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHF DLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASL DQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVE LLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQ DSRMHREGNKVRGLTPKMLTEANLNSLRLLHEMAQQRGQSMAQMALSWLLKDERVTSVLI GASRAEQLEENVQALNNLTFSTEELAQIDQHIADGELNLWQASSDK >gi|223713543|gb|ACDM01000055.1| GENE 42 38906 - 39793 940 295 aa, chain + ## HITS:1 COG:Z4353 KEGG:ns NR:ns ## COG: Z4353 COG0412 # Protein_GI_number: 15803544 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Escherichia coli O157:H7 EDL933 # 1 295 14 308 308 579 98.0 1e-165 MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALATQ VEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARR VAKAGYIALAPDGLSSVGGYPGNDDKGRELQQQIDPTKLMNDFFAAIEFMQRYPQATGKA GITGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTADVAKIEAPLLLHYAELDTRINEGW PAYEAALKANNKVYEAYIYPGVNHGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS >gi|223713543|gb|ACDM01000055.1| GENE 43 39912 - 40199 315 95 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_3148 NR:ns ## KEGG: ECIAI1_3148 # Name: yghW # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 95 1 95 95 184 100.0 8e-46 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN >gi|223713543|gb|ACDM01000055.1| GENE 44 40388 - 41506 1235 372 aa, chain + ## HITS:1 COG:ECs3882 KEGG:ns NR:ns ## COG: ECs3882 COG1740 # Protein_GI_number: 15833136 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Escherichia coli O157:H7 # 1 372 1 372 372 703 100.0 0 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR QQKKDNADSRGE >gi|223713543|gb|ACDM01000055.1| GENE 45 41509 - 42495 970 328 aa, chain + ## HITS:1 COG:ECs3881 KEGG:ns NR:ns ## COG: ECs3881 COG0437 # Protein_GI_number: 15833135 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 328 1 328 328 674 100.0 0 MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDI NFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEENGYAYIKKQCMHCVDPNC VSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQK GVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLALKPGSEYHYPRQTLKSGDTYL HTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPKLDDLSTGARSENIQHTLYKGMMLP LAVLAGLTVLVRRNTKNDHHDGGDDHES >gi|223713543|gb|ACDM01000055.1| GENE 46 42485 - 43663 1617 392 aa, chain + ## HITS:1 COG:hybB KEGG:ns NR:ns ## COG: hybB COG5557 # Protein_GI_number: 16130895 # Func_class: C Energy production and conversion # Function: Polysulphide reductase # Organism: Escherichia coli K12 # 1 392 1 392 392 719 100.0 0 MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLL IGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFY IPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALL PTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNG PDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLV VLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVA IEICAYIVLIRLLPILPPLKQNDHNRHEASKA >gi|223713543|gb|ACDM01000055.1| GENE 47 43660 - 45363 2014 567 aa, chain + ## HITS:1 COG:ECs3879 KEGG:ns NR:ns ## COG: ECs3879 COG0374 # Protein_GI_number: 15833133 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Escherichia coli O157:H7 # 1 567 1 567 567 1185 100.0 0 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI HSFDPCMACAVHVVDADGNEVVSVKVL >gi|223713543|gb|ACDM01000055.1| GENE 48 45363 - 45857 594 164 aa, chain + ## HITS:1 COG:hybD KEGG:ns NR:ns ## COG: hybD COG0680 # Protein_GI_number: 16130893 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli K12 # 1 164 1 164 164 291 100.0 4e-79 MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGMELLGDMANRDHLII ADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI PESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPREAIHD >gi|223713543|gb|ACDM01000055.1| GENE 49 45850 - 46338 526 162 aa, chain + ## HITS:1 COG:no KEGG:SSON_3137 NR:ns ## KEGG: SSON_3137 # Name: hybE # Def: hydrogenase 2-specific chaperone # Organism: S.sonnei # Pathway: not_defined # 1 162 1 162 162 324 98.0 6e-88 MTEEITGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI EEGQRLTDDCARMILSLPVSNPDVPHAGRRALLFGRRSGENA >gi|223713543|gb|ACDM01000055.1| GENE 50 46331 - 46672 327 113 aa, chain + ## HITS:1 COG:hybF KEGG:ns NR:ns ## COG: hybF COG0375 # Protein_GI_number: 16130891 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Escherichia coli K12 # 1 113 1 113 113 200 100.0 5e-52 MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFSFEIVCHGTVAQGC DLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTGDSLIVKSIEVE >gi|223713543|gb|ACDM01000055.1| GENE 51 46685 - 46933 389 82 aa, chain + ## HITS:1 COG:ECs3875 KEGG:ns NR:ns ## COG: ECs3875 COG0298 # Protein_GI_number: 15833129 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 82 1 82 82 152 98.0 2e-37 MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSII DEDEAKATLDALRQMDYDITSG >gi|223713543|gb|ACDM01000055.1| GENE 52 47003 - 47869 1062 288 aa, chain - ## HITS:1 COG:ECs3874 KEGG:ns NR:ns ## COG: ECs3874 COG0625 # Protein_GI_number: 15833128 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1 288 17 304 304 598 99.0 1e-171 MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTI MLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVFESGS ILLYLAEKFGYFLPQDLAKRTETLNWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFT MEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFLDAESYKHVQ RWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG >gi|223713543|gb|ACDM01000055.1| GENE 53 48074 - 49933 2092 619 aa, chain + ## HITS:1 COG:gsp_2 KEGG:ns NR:ns ## COG: gsp_2 COG0754 # Protein_GI_number: 16130888 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli K12 # 233 619 1 387 387 825 100.0 0 MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCV EFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIW DKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTF DDTTILGWMIQTEDTDYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQA NGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR LRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFN PAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELG WDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLL RPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCG SNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD ESLVIKKESDIEPLIVVKK >gi|223713543|gb|ACDM01000055.1| GENE 54 50021 - 50284 90 87 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_3273 NR:ns ## KEGG: EcSMS35_3273 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 42 87 1 46 46 70 93.0 2e-11 MPEQVITKALCIYQGQQINLAYIRLRHFEFTNGRIISDFNGMGKVKYHFLTIKSVLFLVY QTISIHSKSLEIIKTQVFHWLIYSYIK >gi|223713543|gb|ACDM01000055.1| GENE 55 50221 - 51720 1421 499 aa, chain + ## HITS:1 COG:pitB KEGG:ns NR:ns ## COG: pitB COG0306 # Protein_GI_number: 16130887 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Escherichia coli K12 # 1 499 1 499 499 885 98.0 0 MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMQPQLAVVMAAFF NFFGVLLGGLSVAYAIVHMLPTDLLLNMGSTHGLAMVFSMLLAAIIWNLGTWFFGLPASS SHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLIVSPIVGLVIAGGLIFLLRRF WSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSAAGVAFSHGANDGQKGIGLVMLV LVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQHPELPQKLITMEPPLPATSTDGTQ VTEFHCHPANTFDAIARVKTMLPGNMESYEPLSVSQRSQLRRIMLCISDTSAKLAKLPGV SKEDQNLLKKLRSDMLSTIEYAPVWIIMAVALALGIGTMIGWCRVAMTIGEKIGKRGMTY AQGMAAQMTAAVSIGLASYIGMPVSTTHVLSSAVAGTMVVDGGGLQRKTVTSILMAWVFT LPAAIFLSGGLYWIALQLI >gi|223713543|gb|ACDM01000055.1| GENE 56 51769 - 52461 543 230 aa, chain - ## HITS:1 COG:no KEGG:ECP_3071 NR:ns ## KEGG: ECP_3071 # Name: not_defined # Def: ATP-binding protein YghT # Organism: E.coli_536 # Pathway: not_defined # 1 230 1 230 230 459 98.0 1e-128 MQSITPPLIAVIGSDGSGKSTVCEHLITVVEKYGAAERVHLGKQAGNVGRAVTKLPFMGK SLHKTIERNQVKTAKKLPGPVPALVITAFVARRLLRFRHMLACRRRGLIVLTDRYPQDQI PGAYDGTVFPPNIEGGRFVSWLASQERKAFHWMASHKPDLVIKLNVDLDVACARKPDHKR ESLARKIAITPQLTFGGAQLVDIDANQPLEKVLIDAEKAITDFMTARGYH >gi|223713543|gb|ACDM01000055.1| GENE 57 52650 - 53348 344 232 aa, chain + ## HITS:1 COG:no KEGG:ECP_3070 NR:ns ## KEGG: ECP_3070 # Name: not_defined # Def: ATP-binding protein YghS # Organism: E.coli_536 # Pathway: not_defined # 1 232 1 232 232 468 98.0 1e-130 MSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAATMPTEHIYLGQSSGRIGEWISQLPV IGAPFGRYLRSKAAHVHEKPSTPPGNMTALVIYLLSCWRAYKFHKMLCKNQQGYLLITDR YPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDEQTAFA RKPDHQLAALQEKIAVTPQLTFNGAKILELDGRQPADEILQASLRAIHAALS >gi|223713543|gb|ACDM01000055.1| GENE 58 53380 - 54138 589 252 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_3479 NR:ns ## KEGG: ECIAI39_3479 # Name: yghR # Def: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain # Organism: E.coli_IAI39 # Pathway: not_defined # 1 252 1 252 252 486 99.0 1e-136 MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTNDLVKSLQQHWQTERRYLGLLS GEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAVIMYCFSLRRMANLRKVQR LAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMFLAQRERRLYQKMAQYRPELI IRLGIDIDTAISRKPDHDYAELQDKIGVMSTIGYNGTKILEIDSRAPYSEVLEQAQKAVS LVAIVSDRRSLT >gi|223713543|gb|ACDM01000055.1| GENE 59 54184 - 55533 920 449 aa, chain + ## HITS:1 COG:yghQ KEGG:ns NR:ns ## COG: yghQ COG2244 # Protein_GI_number: 16130883 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 42 355 12 325 325 587 99.0 1e-167 MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQS YAKSISDFIKFQAWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLP FLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSV VAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARHIKGAWS FVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEV MRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLIQVMLG AIVISMLGFPQESLLLMAGKQRAFLVAQTIASIGYIVLLFMFCHLFGVLGAAFAYFGGQC LDVVLSLIPTLKAFFQRHSLLYNAAGEKS >gi|223713543|gb|ACDM01000055.1| GENE 60 55533 - 56357 464 274 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_3477 NR:ns ## KEGG: ECIAI39_3477 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 274 1 274 274 545 100.0 1e-154 MMRKYFPLEASERLFVAVEEDDVVDAQVSLPPTIALSCTTEIIHDNYALCLQFWLNGVNR QELLRLICKQAKGDELTADERKQFKYMRARYKHLRFAQRLYLKKHQAGFLFGKTTVFLGR FQDGFRNGKKNIVSYYGNLLRVYLSSPVWSLVNYSLRHSQLESVSGFIAYRQKQMHTLKE IIAKPRLTGREFHDVRKIISQQVSYYDTLRSLDPENKEALQISRFLAAINGLMGDKHDDM VADDMENRQSYDAPVALDSDIRQRLELLISRFPL >gi|223713543|gb|ACDM01000055.1| GENE 61 56369 - 56929 492 186 aa, chain + ## HITS:1 COG:ytfJ KEGG:ns NR:ns ## COG: ytfJ COG3054 # Protein_GI_number: 16132038 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Escherichia coli K12 # 1 184 1 183 184 210 54.0 1e-54 MSSRLIIALIIMLLAQGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLAG KVRIIQYIAGRKSAKKKNSLLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIEK NKRRYPWAQFVIDGNGLGRVAWRLPEQSSTILVLNKDGQIQWAKDGSLTPEEVDHVIALA QKLINE >gi|223713543|gb|ACDM01000055.1| GENE 62 56960 - 58030 1017 356 aa, chain + ## HITS:1 COG:PA3828 KEGG:ns NR:ns ## COG: PA3828 COG0795 # Protein_GI_number: 15599023 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pseudomonas aeruginosa # 3 343 2 351 372 124 29.0 3e-28 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP NVKRKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQGRFSTLLPL TLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVARDFSLLQKFSR >gi|223713543|gb|ACDM01000055.1| GENE 63 58027 - 59106 886 359 aa, chain + ## HITS:1 COG:VC2499 KEGG:ns NR:ns ## COG: VC2499 COG0795 # Protein_GI_number: 15642495 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Vibrio cholerae # 33 352 34 352 356 148 30.0 2e-35 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM PGNTFSVRQLNHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSPG MGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYWYDRQH >gi|223713543|gb|ACDM01000055.1| GENE 64 59141 - 60313 1173 390 aa, chain - ## HITS:1 COG:CC1162 KEGG:ns NR:ns ## COG: CC1162 COG0156 # Protein_GI_number: 16125414 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Caulobacter vibrioides # 1 388 1 389 404 402 53.0 1e-112 MGLYDKYARLAGERLQFSDNGLTPFGTCIDEVYSATEGRIGNKKVILAGTNNYLGLTFNH DAIAEGQAALAAQGTGTTGSRMANGSYAPHLALEKEIAEFFNRPTAIVFSTGYTANLGVI SALADHNAVVLLDADSHASIYDACSLGGAEIIRFRHNDAKDLERRMVRLGERAKEAIIIV EGIYSMLGDVAPLAEIVDIKRRLGGYLIVDEAHSFGVLGATGRGLAEAVGVEDDVDIIVG TFSKSLASIGGFAVGSEAMEVLRYGSRPYIFTASPSPSCIATVRSSLRTIASQPELRQKL MDNANHLYDGLQKLGYELSSHISPVVPVIIGSKEDGLRIWRELISLGVYVNLILPPAAPA GITLLRCSVNAAHSHEQIDAIIQAFATLKQ >gi|223713543|gb|ACDM01000055.1| GENE 65 60313 - 60561 288 82 aa, chain - ## HITS:1 COG:no KEGG:S3224 NR:ns ## KEGG: S3224 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 82 1 82 82 124 100.0 1e-27 MVNREIVMDYILSCLQDLVENGVEIKPDSDLVNDLGLESIKVMDLLMMLEDRFDISIPIN ILLDVKTPAQLMETLLPWLENK >gi|223713543|gb|ACDM01000055.1| GENE 66 60593 - 61507 810 304 aa, chain - ## HITS:1 COG:CC1164 KEGG:ns NR:ns ## COG: CC1164 COG0702 # Protein_GI_number: 16125416 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Caulobacter vibrioides # 5 287 9 288 317 120 33.0 4e-27 MNQTVAVTGATGFIGKYIIDNLLARGFHVRALTRTARAHVNDNLTWVRGSLEDTHSLSEL VTGASAVVHCAGQVRGHKEEIFTRCNVDGSLRLMQTAKESGFCQRFLFISSLAARHPELS WYANSKHVAEQRLTAMADEITLGVFRPTAVYGPGDKELKPLFDWMLRGLLPRLGTPETQL SFLHVTDFAQAVGQWLSAETVQTQTYELCDGVAGGYDWQRVQQLVADVRCGSVRMVGIPL PLLTCLADISTALSRLAGKEPMLTRSKIRELTHADWSASNNRISEDINWFPGISLEHALR NGLF >gi|223713543|gb|ACDM01000055.1| GENE 67 61504 - 63195 1227 563 aa, chain - ## HITS:1 COG:CC1165 KEGG:ns NR:ns ## COG: CC1165 COG0318 # Protein_GI_number: 16125417 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Caulobacter vibrioides # 1 548 11 560 567 445 43.0 1e-124 MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKG DRVALIAETSSGFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSGKLQGLLASCQPAAIIT GDEWLPLVNAATHNNNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRG VIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQ DFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISA EQLHQFAECFRQVNFDDKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA PDAETRAVSTFVNCGKALPEHGIEIRNEAGIPVAERVVGHICISGPSLMSGYFGDQISQD EIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA FVTAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVTADIDLLPPHSIPRTSSGKPA RAEAKKRYQKAYAASLHVQESLA >gi|223713543|gb|ACDM01000055.1| GENE 68 63599 - 64741 961 380 aa, chain + ## HITS:1 COG:no KEGG:c3711 NR:ns ## KEGG: c3711 # Name: yghO # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 380 23 402 402 800 100.0 0 MECDLLMIKIEKVINKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIW QAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQ GASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQ RTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEF ATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKV SGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNN MLERIGAEPYKRYRLYEKQI >gi|223713543|gb|ACDM01000055.1| GENE 69 64817 - 65656 636 279 aa, chain - ## HITS:1 COG:glcC KEGG:ns NR:ns ## COG: glcC COG2186 # Protein_GI_number: 16130880 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 24 275 1 252 254 474 100.0 1e-133 MRDVRVLRVKNRKIGPTCARGPGMKDERRPICEVVAESIERLIIDGVLKVGQPLPSERRL CEKLGFSRSALREGLTVLRGRGIIETAQGRDSRVARLNRVQDTSPLIHLFSTQPRTLYDL LDVRALLEGESARLAATLGTQADFVVITRCYEKMLAASENNKEISLIEHAQLDHAFHLAI CQASHNQVLVFTLQSLTDLMFNSVFASVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVA QRAARDHVRTVKKNLHDIELEGHHLIRSAVPLEMNKVGM >gi|223713543|gb|ACDM01000055.1| GENE 70 65838 - 67337 1565 499 aa, chain + ## HITS:1 COG:glcD KEGG:ns NR:ns ## COG: glcD COG0277 # Protein_GI_number: 16130879 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1 499 1 499 499 1002 100.0 0 MSILYEERLDGALPDVDRTSVLMALREHVPGLEILHTDEEIIPYECDGLSAYRTRPLLVV LPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILDINPVGR RARVQPGVRNLAISQAVAPHNLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLL KIEVQTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVTTEVTVKLLPKPPVARVLLAS FDSVEKAGLAVGDIIANGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVES DVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPR RALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELC VEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRCAE FGAMHVHHGHLPFPELERF >gi|223713543|gb|ACDM01000055.1| GENE 71 67337 - 68389 1075 350 aa, chain + ## HITS:1 COG:glcF_1 KEGG:ns NR:ns ## COG: glcF_1 COG0277 # Protein_GI_number: 16130878 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli K12 # 1 318 1 318 369 629 97.0 1e-180 MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQTLDVRCHRGIVNYDPTE LVITARAGTPLVAIEAALESAGQMLPCEPPHYGEEATWGGMVACGLAGPRRPWSGSVRDF VLGTRIITGTGKHLRFGGEVMKNVAGYDLSRLMAGSYGCLGVLTEISMKVLPRPRASLSL RREISLQEAMNEIALWQLQPLPISGLCYFDNALWIRLEGGEGSVKAARELLGGEEVAGQF WQQLREQQLPFFSLPGTLWRISLPSDAPMIDLPGEQLIDWGGALRWLKSTADDNQIHRIA RNAGGHATRFSAGDGGFAPLPAPLFRYHQQLKQQLDPCGVFNPGRMYAEL >gi|223713543|gb|ACDM01000055.1| GENE 72 68400 - 69623 1009 407 aa, chain + ## HITS:1 COG:glcF_2 KEGG:ns NR:ns ## COG: glcF_2 COG0247 # Protein_GI_number: 16130878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli K12 # 16 407 1 392 392 774 98.0 0 MQTQLTEEMRQNARALEADSILRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE GNDVTLKTQEHLDRCLTCRNCETTCPSGVRYHNLLDIGRDIVEQKVKRPLPERMLREGLR QVVPRPAVFRALTQVGLVLRPFLPEQVRAKLPAETVKAKPRPPLRHKRRVLMLEGCAQPT LSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWPAIEAG VEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLAIRGDK KLAFHCPCTLQHAQKLNGEVEKVLLRLGFTLTDVPDSHLCCGSAGTYALTHPDLARQLRD NKMNALESGKPEMIVTANIGCQTHLASAGHTSVRHWIEIVEQALDKE >gi|223713543|gb|ACDM01000055.1| GENE 73 69628 - 70032 639 134 aa, chain + ## HITS:1 COG:glcG KEGG:ns NR:ns ## COG: glcG COG3193 # Protein_GI_number: 16130877 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol # Organism: Escherichia coli K12 # 1 118 1 118 134 198 100.0 2e-51 MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLALSRMDDCAPIAAYISQE KARTAALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVVVDGQIIGAVGVSGLTGAQ DAQVAKAAAAVLAK >gi|223713543|gb|ACDM01000055.1| GENE 74 70054 - 72225 2452 723 aa, chain + ## HITS:1 COG:glcB KEGG:ns NR:ns ## COG: glcB COG2225 # Protein_GI_number: 16130876 # Func_class: C Energy production and conversion # Function: Malate synthase # Organism: Escherichia coli K12 # 1 723 1 723 723 1459 98.0 0 MSQTITQGRLRIDANFKRFVDEEVLPGVELDVAAFWRNFDEIVHDLAPENRQLLAERDRI QAALDEWHRSNPGPVKDKEAYKSFLRELGYLVLQPERVTVETTGIDSEITSQAGPQLVVP AMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQRGEQVIAWVRRFLDESLPL ENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIEL QIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQE KMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEG ILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFANKLFTRIETMLGMAPNTL KMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTP WIKAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTA ATLHALHYHQTNVQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNV QGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHIANWLRHGILTKDQVQASL ENMAKVVDQQNAGDPAYRPMVENFANSCAFKAACDLIFLGVKQPNGYTEPLLHAWRLREK ENH >gi|223713543|gb|ACDM01000055.1| GENE 75 72581 - 74263 1753 560 aa, chain + ## HITS:1 COG:yghK KEGG:ns NR:ns ## COG: yghK COG1620 # Protein_GI_number: 16130875 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Escherichia coli K12 # 1 560 1 560 560 911 99.0 0 MVTWTQMYMPMGGLGLSALVALIPIIFFFVALAVLRLKGHVAGAITLILSILIAIFAFKM PIDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDIIRSSVISITDDQRLQVLL IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANTAPVAFGALGVPILVA GQVTGIDPFDIGAMAGRQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGGSFAVTQFF TSNYIGPELPDITSALVSIVSLSLFLKVWRPKNTETAISMGQSAGAMVVNKPSSGGPVPS EYRLGQIIRAWSPFLILTVLVTIWTMKPFKALFAPGGAFYSLVINFQIPHLHQQVLKAAP IVAQPTPMDAVFKFDPLSAGGTAIFIAAIISIFILGVGIKKGIGVFAETLISLKWPILSI GMVLAFAFVTNYSGMSTTLALVLAGTGVMFPFFSPFLGWLGVFLTGSDTSSNALFGSLQS TTAQQINVSDTLLVAANTSGGVTGKMISPQSIAVACAATGMVGRESELFRYTVKHSLIFA SVIGIITLLQAYVFTGMLVS >gi|223713543|gb|ACDM01000055.1| GENE 76 74748 - 79310 4062 1520 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_3460 NR:ns ## KEGG: ECIAI39_3460 # Name: yghJ # Def: inner membrane lipoprotein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 1520 7 1524 1524 2781 94.0 0 MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPSVDSGSGTLPEVKPDPTPTPEPTP EPTPDPEPTPDPTPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFTPG NTVSCVVGSTTIATFNTQSEAARSLRAVDKVSFSLEDAQELANSENKKTNAISLVTSSDS CPADAEQLCLTFSSVVDRARFEKLYKQIDLATDNFSKLVNEEVENNAATDKAPSTHTSTV VPVTTEGTKPDLNASFVSANAEQFYQYQPTEIILSEGQLVDSLGNGVAGVDYYTNSGRGV TDENGKFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQ NNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLDEGDQNVVLPNEFIEQFKTGQAKEI DTAICAKTNGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYQSVSKFHVFHDSTNFYG STGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVT RDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDM KHFMQNVLRYLSDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVE HLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKG GSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWV YERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDE ADHKTEDSLKAAKAKIFEKFPGLKECKDPTYHYEVNCLEYRPGTGVPVTGGMYVPQYTQL SLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNKI EYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDELKKSLVDNNMIYGEKSVNKAGM MNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSAEGEKVTETISLYSNPTKWF AGNMQSTGLWAPAQKEVTIESTASVPVTVTVALADDLTGREKHEVALNRPPKVTKTYELK ANGEMKFTVPYGGLIYIKGNSPQNESAEFTFTGVVKAPFYKDGAWKNALNSPAPLGELES DAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSMNDFYGRNDEDGKHRMFTYKNLTGHK HRFTNDVQISIGDAHSGYPVMNSSFSTNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGA TEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAWARGGAGDRLLMYAQLKEW AEKNFDIKTWYPDGNLPAFYSEREGMKGWNLFQLMHRKARGDEVGKTKFGERNYCAESNG NAADKLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMNFEGGVSQSAYETLAALNLP KPQQGPETINQVTEHKMSAE >gi|223713543|gb|ACDM01000055.1| GENE 77 79440 - 80249 435 269 aa, chain + ## HITS:1 COG:pppA KEGG:ns NR:ns ## COG: pppA COG1989 # Protein_GI_number: 16130872 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Escherichia coli K12 # 1 269 42 310 310 475 96.0 1e-134 MFFDVFQQYPAAIPVLATVGGLIIGSFLNVVIWRYPIMLRQQMAEFHGEMPSAQSKISLA LPRSHCPHCQQTIRIRDNIPLLSWLMLKGRCRDCQAKISKRYPLVELLTALAFLLASLVW SESGWGLAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTG VLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGPLSLPNVALIASCCGLIYAV ITKRGSTTLPFGPCLSLGGIATLYLQALF >gi|223713543|gb|ACDM01000055.1| GENE 78 80315 - 80725 316 136 aa, chain + ## HITS:1 COG:no KEGG:JW2938 NR:ns ## KEGG: JW2938 # Name: yghG # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 136 1 136 136 227 100.0 1e-58 MSIKQMPGRVLISLLLSVTGLLSGCASHNENASLLAKKQAQNISQNLPIKSAGYTLVLAQ SSGTTVKMTIISEAGTQTTQTPDAFLTSYQRQMCADPTVKLMITEGINYSITINDTRTGN QYQRKLDRTTCGIVKA >gi|223713543|gb|ACDM01000055.1| GENE 79 80743 - 81702 701 319 aa, chain + ## HITS:1 COG:yghF KEGG:ns NR:ns ## COG: yghF COG3031 # Protein_GI_number: 16130870 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulC # Organism: Escherichia coli K12 # 44 319 1 276 288 486 92.0 1e-137 MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKVAHSL WRYFSFSAEYTAVSPSANKPLRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPV AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKM ERLSLAEEKRPTIAVTSKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS IQLTVLRKGARYDISIALR >gi|223713543|gb|ACDM01000055.1| GENE 80 81732 - 83792 2088 686 aa, chain + ## HITS:1 COG:gspD KEGG:ns NR:ns ## COG: gspD COG1450 # Protein_GI_number: 16131204 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Escherichia coli K12 # 18 665 5 639 654 502 44.0 1e-142 MFWRDMTLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIET VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS SAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR AQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTV ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT AQPVLPAQNQALPPEVRAFLNAGRTR >gi|223713543|gb|ACDM01000055.1| GENE 81 83792 - 85285 1478 497 aa, chain + ## HITS:1 COG:VC2732 KEGG:ns NR:ns ## COG: VC2732 COG2804 # Protein_GI_number: 15642726 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Vibrio cholerae # 14 497 16 503 503 632 67.0 0 MVPVAQETTANTVRLPYSFSRRFSLVAWCEASLEILHVHPLSLSVLQELQRGLNASFTLR QIDEAEFEQRLNAVWQRDSSEARQLMEDLGSAEDFFTLAEELPETEDLLESDDDAPIIKL INAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLYEMLRPGRKLASLLVSRIKVMARLD IAEKRVPQDGRIALLLGGRAIDVRVSTMPSAWGERVVLRLLDKNQARLTLERLGLSLELT AQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNHSRNILTVEDPIEYMIEGIGQTQ VNTRVGMTFARGLRAILRQDPDVVMVGEIRDTETAEIAVQASLTGHLVLSTLHTNTAVGA ITRLQDMGVEPFLLSSSLTGVMAQRLVRTLCPDCRQSAPATDEEKRLLGITDARTVTLYH PQGCPACNHKGFRGRTAIHELIVVDATLRDLIHRQAGELELERYVRQHSAGIRSNGIEKV LAGETSLDEVLRVTMEA >gi|223713543|gb|ACDM01000055.1| GENE 82 85285 - 86508 1236 407 aa, chain + ## HITS:1 COG:VC2731 KEGG:ns NR:ns ## COG: VC2731 COG1459 # Protein_GI_number: 15642725 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Vibrio cholerae # 1 405 1 404 406 417 56.0 1e-116 MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARLNASTGGMLQRRRHA HRRVVAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV VATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDMLQTSGVYWLAGLLGLLVLG QRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS ANRYVEQQLLLAADRVREGSSLRAALADLRLFPPMMLYMIASGEQSGELETMLEQAAVNQ EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMVGM >gi|223713543|gb|ACDM01000055.1| GENE 83 86525 - 86980 621 151 aa, chain + ## HITS:1 COG:VC2730 KEGG:ns NR:ns ## COG: VC2730 COG2165 # Protein_GI_number: 15642724 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Vibrio cholerae # 6 151 2 146 146 230 76.0 8e-61 MNSLSRTQKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENAL DMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRLPKDPWGNDYQYLSPGEKG LFDVYTLGADGQENGEGAGADIGNWNLQEFQ >gi|223713543|gb|ACDM01000055.1| GENE 84 86984 - 87547 378 187 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3440 NR:ns ## KEGG: ECUMN_3440 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_UMN026 # Pathway: Bacterial secretion system [PATH:eum03070] # 1 187 1 187 187 349 97.0 3e-95 MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDFLTRFAQFKDRAVIEGQ TLGVLIDPPGYQFMQRRHGQWLSVSATRLSAQVTVPKQVQMLLQPGSDMWQKEYALELQR RRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYSAAQNACWAVKLAHDGTLSLS QCDERMP >gi|223713543|gb|ACDM01000055.1| GENE 85 87544 - 87915 348 123 aa, chain + ## HITS:1 COG:VC2728 KEGG:ns NR:ns ## COG: VC2728 COG2165 # Protein_GI_number: 15642722 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Vibrio cholerae # 2 112 4 112 117 80 41.0 5e-16 MKRGFTLLEVMLALAIFALAAMAVLQIASGALSNQHVLEEKTVAGWVAENQTALLYLMTR EQRAVSHQGESDMAGSRWYWRTTPLSTGNALLQAVDIEVSRHEDFSSVIQSRRAWFSAVG GQQ >gi|223713543|gb|ACDM01000055.1| GENE 86 87912 - 88517 351 201 aa, chain + ## HITS:1 COG:VC2727 KEGG:ns NR:ns ## COG: VC2727 COG4795 # Protein_GI_number: 15642721 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Vibrio cholerae # 2 201 10 211 221 119 38.0 4e-27 MRRTCAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVAGHDQKLNLMQQTMSFLNH DLTQMMPRPVRGDQGQREPALLAGAGVLTSESEGMRFVRGGVVNPLMRLPRSNLLTVGYR IHGGYLERLAWPLTDAAGSVKPTTQKLIPADSLRLQFHDGTRWQESWSSVQAIPVAVRIT LHSPQWGEIERIWLLRGPQLS >gi|223713543|gb|ACDM01000055.1| GENE 87 88514 - 89494 1007 326 aa, chain + ## HITS:1 COG:VC2726 KEGG:ns NR:ns ## COG: VC2726 COG3156 # Protein_GI_number: 15642720 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulK # Organism: Vibrio cholerae # 8 306 5 307 336 213 43.0 4e-55 MMITLPPKRGMALVVVLVLLAVMMLVTITLSSRMQQQLGRTRSQQEYQQALWYSASAESL ALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRP LAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQ PLADISEMRVVQGMDAGLYQKLKPLVCALPMARQQININTLDVTQSVILEALFDPWLSPV QARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTILSVDSNYFWLRSDITVNEIE LTMNSLIVRMGPQHFSVLWHQTGESE >gi|223713543|gb|ACDM01000055.1| GENE 88 89500 - 90669 764 389 aa, chain + ## HITS:1 COG:yghE KEGG:ns NR:ns ## COG: yghE COG3297 # Protein_GI_number: 16130869 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulL # Organism: Escherichia coli K12 # 104 389 1 286 286 517 95.0 1e-146 MLEIFFPLCAADPIRWQRHTPDVEHGIWPDVADERLQQWLQTDAIRLYIPGEWISVWQVE LPDVPRKQIPTILPALLEEELNQDIDELHFAPLKIDQQLATVAVIHQQHMRNIAQWLQAN GITRATVAPDWMSIPCGFMAGDAQRVICRIDECRGWSAGRALAPVMFRAQLNEQNLPISL TVVGIAPEELSAWAGADAERLTVTALPAITTYGESEGNLLTGPWQPRVSYRKQWARWRVM ILPILLILVALVVERGVTLWSVSEQVAQSRTQAEKQFLTLFPEQKRIVNLRSQVTMALKK YRPQADDTDLLAELSAIASTLKSASLSDIEMRGFTFDQKRQTLHLQLRAANFASFDKLRS ALAADYVVQQDALQKEGDAVSGGVTLRRK >gi|223713543|gb|ACDM01000055.1| GENE 89 90671 - 91207 552 178 aa, chain + ## HITS:1 COG:yghD KEGG:ns NR:ns ## COG: yghD COG3149 # Protein_GI_number: 16130868 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulM # Organism: Escherichia coli K12 # 1 178 1 178 178 319 92.0 2e-87 MLRDKFIHYFQQWSERQLSRGEHWLTQHLAGRSPREKGMLLAAAVFLFSAGYYVLIWQPL SERIEQQETMLQQLVAMNARLKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRI AERGENIQVWIDPVVFNDLLNWLKALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG >gi|223713543|gb|ACDM01000055.1| GENE 90 92264 - 93040 565 258 aa, chain + ## HITS:1 COG:SMb20822 KEGG:ns NR:ns ## COG: SMb20822 COG1682 # Protein_GI_number: 16264310 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Sinorhizobium meliloti # 15 250 29 264 274 123 33.0 3e-28 MARSGFEVQKVTVEALFLREIRTRFGKFRLGYLWAILEPSAHLLILLGIFGYIMHRTMPD ISFPVFLLNGLIPFFIFSSISNRSVGAIEANQGLFNYRPVKPIDTIIARALLETLIYVAV YILLMLIVWMAGEYFEITNFLQLVLTWSLLIILSCGVGLIFMVVGKTFPEMQKVLPILLK PLYFISCIMFPLHSIPKQYWSYLLWNPLVHVVELSREAVMPGYISEGVSLNYLAMFTLVT LFIGLALYRTREEAMLTS >gi|223713543|gb|ACDM01000055.1| GENE 91 93037 - 93714 171 225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 202 1 218 245 70 25 3e-11 MIKIENLTKSYRTPAGRHYVFKNLNIEIPSGKSVAFIGRNGAGKSTLLRMIGGIDRPDSG KIITNKTISWPVGLAGGFQGSLTGRENVKFVARLYAKQEELKEKIEFVEEFAELGKYFDM PIKTYSSGMRSRLGFGLSMAFKFDYYIVDEVTAVGDARFKEKCAQLFKERHKESSFLMVS HSLNSLKEFCDVAIVFKDDNAVGFYEDVHEGIKSYQINENTTIKI >gi|223713543|gb|ACDM01000055.1| GENE 92 94330 - 97410 739 1026 aa, chain + ## HITS:1 COG:jhp0540 KEGG:ns NR:ns ## COG: jhp0540 COG5610 # Protein_GI_number: 15611607 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Helicobacter pylori J99 # 309 630 18 310 591 132 31.0 3e-30 MFGIFSRAPFPAYGLLDPCGLYEYSYQYKYADKIRAEEISEEEKEVIKLLRRQSSRALAA YHPLKKYISSLYEKYDRLVVLACQVDNYFSYNSCTNYPSQYAMVEDVLSQVPSNIGVIVT EHGYKRQISDEQIESLNEKYSNFIYFSKKDVFTPSQFILPYVDGALSVSSSIGYQAALWQ IPYFGLGKSQVDVLCSNTSLMSFVNDVEKGIKIDRDNILYVLLSKVHLSHKNDLFNGKSY LNKLKDLFNKFTSNCDEYEYFNTKKSIDEVRKDIICGNREWLLKKNFIDSKLVPEVDHLR VAMSHSKAISYDLFDTLVERDFVEPHELFNLIESRVRNELNNKNFPFYYVRRQAEIDLRR ETRGEFEITLDEIYERFPRYFDLTLEQLEKIKNIEIDAEVELVHPKKEMVREFYFSQMIC ESVSIITDIYLSQNVIERILQKVKISGYNKLLVSAETKTRKHNGTIYPEYLKYIRDNFDI NAGQALHVGDNKQADGDMAKKHGIKTYVFQKAIDNYKKSLIADILRSSINHPGISSSVIN GLFANKYHAGHWFKINKESIFNADEYNYGYMAIGPLVVGFTQWLYRRVNKLGIKKLYFLS RDGWILKKTFDYFYPESSSGIKTEYLYSSRRTAMVASLRNIDDIIEVASQNFNARKLSDF LSTRFGLDVDTVKKSVLEKYNYKHDTIVSPYFEFGKLIGFLKDIHHTILSNAKNERESYI DYLRETGFENDCLNGGATVVDIGYSGSMQYYLKKILQCPCVNGFYFLTHHHSRDYFSNDH FEGFLQNLDDHKIAYRHGLNDHVFIFEAALSSPEGSLIKMEGKGQEREMIFLEAEEEIVR KNALLGTHRGVMDFVHDIKTRFGSYFKYIEFSPILSSQLILNFANNPNGIDAGMFASHEV ENVFGGGSVCLISPLLDCYKDSNGTINPKIIDELLKASKWKRGASAYYNLVNGTQPRVNP AKMPAPSVNPVVVKQTPQTTYAHPLKTTTQRKLAKLKKDPYLFFNDSQKPLLKSLRLFFK NTSKLN >gi|223713543|gb|ACDM01000055.1| GENE 93 97529 - 98518 71 329 aa, chain + ## HITS:1 COG:no KEGG:Pden_2282 NR:ns ## KEGG: Pden_2282 # Name: not_defined # Def: TPR repeat-containing protein # Organism: P.denitrificans # Pathway: not_defined # 35 230 1 192 354 94 31.0 4e-18 MSISLKNIDFAKGPVDSLHHDYYLWRGKNIEDKRLFLVFSSRGAGPGEFSFFKTFDALNV NVLHVTPSDFSWYQKGLVGLGSDLPSAFKALSDRIDNFCIYHKIKQIICVGASMGGYGAL IYGALSSRKIKTTLILFGTETILKLPYSKSSESEFDILKKFKDVRFLDYSDLDVNMIFGE FDIVDTYCALSMRHDRNFSFFSCTSASHVVPEYLNRQIGIVNFFTDFLSGGRSFIGRGHI ASELYPEDISPLLFSKQFTEEYNNALLCCLKKYPSFGFAWNRLGVYLHNIGDLAGSLAAL KRAFFINPDYPNTIEHLNSVRNKLKTKNF >gi|223713543|gb|ACDM01000055.1| GENE 94 98596 - 99804 477 402 aa, chain - ## HITS:1 COG:PM0772 KEGG:ns NR:ns ## COG: PM0772 COG3562 # Protein_GI_number: 15602637 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Pasteurella multocida # 1 389 4 397 408 279 38.0 8e-75 MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLA YYQTPKEFPGWLRDLHRQYDFDTILCFGDCRPLHKEAKRWAKSKGLRFLAFEEGYLRPQF ITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTMKRIGHAMWYYLMGWHYRHEF PRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGER VIYVHDLPMPELLRHAKAVVTINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFW QADFKPDMKLFKKFRGYLLVKTQVNGVYYGDRVRKQIKVKKL >gi|223713543|gb|ACDM01000055.1| GENE 95 99839 - 101866 1013 675 aa, chain - ## HITS:1 COG:NMB0082 KEGG:ns NR:ns ## COG: NMB0082 COG3563 # Protein_GI_number: 15676015 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Neisseria meningitidis MC58 # 4 643 26 673 704 612 50.0 1e-175 MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGK PVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAR EAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAA MAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQ YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYI DPQTGEVSDLFTVLQWLQLQRRHLQQRDGYLWAPGLTLWKSAILKPFLQTATNRLSFSRR CTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIY YDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGADFSLPAEAKDKKVIL VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLVGNRKGDIPAELTA ELADYQALGADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHC PRREQKLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQTPRKPMFITRKKAGRVI RYYRKLIMFCKVRFG >gi|223713543|gb|ACDM01000055.1| GENE 96 101863 - 102603 827 246 aa, chain - ## HITS:1 COG:FN0807 KEGG:ns NR:ns ## COG: FN0807 COG1212 # Protein_GI_number: 19704142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Fusobacterium nucleatum # 7 234 6 234 245 192 45.0 5e-49 MSKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEKAV QAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPA LPVATLCHAISAEEATEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYR RDVLQNYSQLPESMPEQAESLEQLRLMSAGINIRTFEVAATGPGVDTPACLEKVRALMAQ ELAENA >gi|223713543|gb|ACDM01000055.1| GENE 97 102613 - 104289 1519 558 aa, chain - ## HITS:1 COG:Cj1444c KEGG:ns NR:ns ## COG: Cj1444c COG1596 # Protein_GI_number: 15792762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Campylobacter jejuni # 68 558 61 552 552 342 38.0 2e-93 MKLFKSILLIAACHAAQASAAIDINADPNLTGAAPLTGILNGQQSDTQNMSGFDNTPPPA PPVVMSRMFGAQLFNGTSADSGATVGFNPDYILNPGDSIQVRLWGAFTFDGALQVDPKGN IFLPNVGPVKVAGVSNSQLNALVTSKVKEVYQSNVNVYASLLQAQPVKVYVTGFVRNPGL YGGVTSDSLLNYLIKAGGVDPERGSYVDIVVKRGNRVRSNVNLYDFLLNGKLGLSQFADG DTIIVGPRQHTFSVQGDVFNSYDFEFRESSIPVTEALSWARPKPGATHITIMRKQGLQKR SEYYPISSAPGRMLQNGDTLIVSTDRYAGTIQVRVEGAHSGEHAMVLPYGSTMRAVLEKV RPNSMSQMNAVQLYRPSVAQRQKEMLNLSLQKLEEASLSAQSSTKEEASLRMQEAQLISR FVAKARTVVPKGEVILNESNIDSVLLEDGDVINIPEKTSLVMVHGEVLFPNAVSWQKGMT TEDYIEKCGGLTQKSGNARIIVIRQNGAAVNAEDVDSLKPGDEIMVLPKYESKNIEVTRG ISTILYQLAVGAKVILSL >gi|223713543|gb|ACDM01000055.1| GENE 98 104313 - 105461 1128 382 aa, chain - ## HITS:1 COG:Cj1445c KEGG:ns NR:ns ## COG: Cj1445c COG3524 # Protein_GI_number: 15792763 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 37 381 27 371 372 204 34.0 2e-52 MLIKVKSAVSWMRARLSAISLADIQKHLAKIIILAPMAVLLIYLAIFSQPRYMSESKVAI KRSDDLNSGSLNFGLLLGASNPSSAEDALYLKEYINSPDMLAALDKQLNFREAFSHSGLD FLNHLSKDETAEGFLKYYKDRINVSYDDKTGLLNIQTQGFSPEFALKFNQTVLKESERFI NEMSHRIARDQLAFAETEMEKARQRLDASKAELLSYQDNNNVLDPQAQAQAASTLVNTLM GQKIQMEADLRNLLTYLREDAPQVVSARNAIQSLQAQIDEEKSKITAPQGDKLNRMAVDF EEIKSKVEFNTELYKLTLTSIEKTRVEAARKLKVLSVISSPQLPQESSFPNIPYLIACWL LVCCLLFGTLKLLLAVIEDHRD >gi|223713543|gb|ACDM01000055.1| GENE 99 105533 - 106516 783 327 aa, chain - ## HITS:1 COG:PM0525_1 KEGG:ns NR:ns ## COG: PM0525_1 COG0794 # Protein_GI_number: 15602390 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Pasteurella multocida # 23 218 43 237 238 256 62.0 5e-68 MSERHLPDDQSSTIDPYLITSVRQTLAEQGAALQNLSKQLDSGQYQRVLNLIMNCKGHVI LSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEIL KLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDA LAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVMQHDVPAVQLDASFKTVIQRITSG CQGMVMVEDAEGGLAGIITDGDLRRFMEKEDSLTSATAAQMMTREPLTLPEDTMIIEAEE KMQKHRVSTLLVTNKANKVTGLVRIFD >gi|223713543|gb|ACDM01000055.1| GENE 100 107315 - 107470 111 51 aa, chain - ## HITS:1 COG:no KEGG:ECED1_3592 NR:ns ## KEGG: ECED1_3592 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 51 1 51 51 82 98.0 5e-15 MAALVVTWFNPVIKAFYMHLSAAGKTKKVALVDSMRKLLTILNAMLRKNEE Prediction of potential genes in microbial genomes Time: Mon May 16 19:09:38 2011 Seq name: gi|223713542|gb|ACDM01000056.1| Escherichia sp. 4_1_40B cont1.56, whole genome shotgun sequence Length of sequence - 4518 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 1, operones - 1 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 341 286 ## c4577 hypothetical protein 2 1 Op 2 . - CDS 338 - 715 243 ## ECED1_4987 toxin of the YeeV-YeeU toxin-antitoxin system 3 1 Op 3 . - CDS 762 - 1136 262 ## APECO1_3487 hypothetical protein 4 1 Op 4 . - CDS 1212 - 1433 346 ## EC55989_2261 conserved hypothetical protein; CP4-44 prophage 5 1 Op 5 . - CDS 1502 - 1978 376 ## COG2003 DNA repair proteins 6 1 Op 6 . - CDS 1994 - 2479 519 ## EcSMS35_4803 antirestriction protein 7 1 Op 7 . - CDS 2570 - 2884 324 ## ECS88_3309 hypothetical protein 8 1 Op 8 2/0.000 - CDS 2889 - 3770 658 ## COG3468 Type V secretory pathway, adhesin AidA - Term 3975 - 4005 -0.5 9 1 Op 9 . - CDS 4143 - 4517 195 ## COG3596 Predicted GTPase Predicted protein(s) >gi|223713542|gb|ACDM01000056.1| GENE 1 2 - 341 286 113 aa, chain - ## HITS:1 COG:no KEGG:c4577 NR:ns ## KEGG: c4577 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 113 1 113 140 192 98.0 2e-48 MKLALTLEADSVNVQALNMGRIVVDVDGVNLIELINKVAENGYSLRVVDKRDATETPATS ASPHQLPEDNTVIQSVMPLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDS >gi|223713542|gb|ACDM01000056.1| GENE 2 338 - 715 243 125 aa, chain - ## HITS:1 COG:no KEGG:ECED1_4987 NR:ns ## KEGG: ECED1_4987 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system # Organism: E.coli_ED1a # Pathway: not_defined # 1 125 35 159 159 244 96.0 7e-64 MKTLPDTHVREASCCPSPVTIWHTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLC DAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH PEAKQ >gi|223713542|gb|ACDM01000056.1| GENE 3 762 - 1136 262 124 aa, chain - ## HITS:1 COG:no KEGG:APECO1_3487 NR:ns ## KEGG: APECO1_3487 # Name: yeeU # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 123 21 144 145 236 92.0 2e-61 MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAY HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLACEADTLGSCGYVYMAVYPTLAP ATTS >gi|223713542|gb|ACDM01000056.1| GENE 4 1212 - 1433 346 73 aa, chain - ## HITS:1 COG:no KEGG:EC55989_2261 NR:ns ## KEGG: EC55989_2261 # Name: yeeT # Def: conserved hypothetical protein; CP4-44 prophage # Organism: E.coli_55989 # Pathway: not_defined # 1 73 1 73 73 150 100.0 1e-35 MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDS FGPYVRLMSVTLN >gi|223713542|gb|ACDM01000056.1| GENE 5 1502 - 1978 376 158 aa, chain - ## HITS:1 COG:ECs2803 KEGG:ns NR:ns ## COG: ECs2803 COG2003 # Protein_GI_number: 15832057 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1 158 1 158 158 298 98.0 2e-81 MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKAD RLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL >gi|223713542|gb|ACDM01000056.1| GENE 6 1994 - 2479 519 161 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_4803 NR:ns ## KEGG: EcSMS35_4803 # Name: not_defined # Def: antirestriction protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 161 1 161 161 320 95.0 9e-87 MTTVSHNSTTPSVSVTTASGNNQSQLVATPVPDEQCISFWPQHFGLIPQWVTLEPRVFGW MDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNVMNGNRAEMSPEAAGIAAC LMTYSHHACRTECYAMTVHYYRLRDYALQHPEYDAIMRIID >gi|223713542|gb|ACDM01000056.1| GENE 7 2570 - 2884 324 104 aa, chain - ## HITS:1 COG:no KEGG:ECS88_3309 NR:ns ## KEGG: ECS88_3309 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 104 169 272 272 188 98.0 4e-47 MQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENML KGGISGRSARGKRIHTRAIHSIDTDIKLNRALWVMAETLLENMR >gi|223713542|gb|ACDM01000056.1| GENE 8 2889 - 3770 658 293 aa, chain - ## HITS:1 COG:flu KEGG:ns NR:ns ## COG: flu COG3468 # Protein_GI_number: 16129941 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 289 53 341 1091 401 87.0 1e-112 MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTSVPALAADTVVQAG ETVSGGALENHDNQIVFGTTNGMTISTGLEYGPDNEVNTGGQWIQNGGIANNTTVTGGGL QRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHEGGIATGTVINEKGWQAVKSG AVATDTVVNTGAEGGPDAENGDTGQTVYGDAVRTTINKNGRQIVAAEGTANTTVVYAGGD QTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQIIKEGGLADFTTVRGEA >gi|223713542|gb|ACDM01000056.1| GENE 9 4143 - 4517 195 124 aa, chain - ## HITS:1 COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1 124 167 290 290 237 98.0 3e-63 GIQPSPAQEQNIREKTDAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLM TRLQDELCTESVRGQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWN WIFF Prediction of potential genes in microbial genomes Time: Mon May 16 19:09:54 2011 Seq name: gi|223713541|gb|ACDM01000057.1| Escherichia sp. 4_1_40B cont1.57, whole genome shotgun sequence Length of sequence - 15626 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 12, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 150 - 1034 535 ## COG0583 Transcriptional regulator - Prom 1108 - 1167 6.7 2 2 Tu 1 4/1.000 + CDS 1283 - 2341 692 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 2359 - 2393 4.3 + Prom 2376 - 2435 1.6 3 3 Tu 1 . + CDS 2518 - 3711 699 ## COG2814 Arabinose efflux permease + Prom 4034 - 4093 3.1 4 4 Tu 1 . + CDS 4126 - 4617 -289 ## c0299 hypothetical protein + Prom 5838 - 5897 1.5 5 5 Tu 1 . + CDS 6044 - 6244 79 ## c0304 hypothetical protein - Term 6056 - 6088 -0.1 6 6 Op 1 . - CDS 6147 - 6749 447 ## c0305 hypothetical protein - Term 6764 - 6792 1.4 7 6 Op 2 . - CDS 6843 - 7049 328 ## COG3311 Predicted transcriptional regulator - Prom 7298 - 7357 2.4 - Term 7328 - 7362 1.0 8 7 Tu 1 . - CDS 7433 - 8200 137 ## ECP_2999 hypothetical protein + Prom 9410 - 9469 2.1 9 8 Tu 1 . + CDS 9641 - 10240 134 ## c0309 hypothetical protein + Term 10335 - 10367 3.3 10 9 Op 1 . + CDS 10612 - 10995 229 ## c0310 hypothetical protein 11 9 Op 2 . + CDS 10992 - 11417 248 ## c0311 hypothetical protein + Term 11636 - 11668 2.1 + Prom 11701 - 11760 1.9 12 10 Tu 1 . + CDS 11889 - 12455 437 ## c0313 hypothetical protein + Term 12473 - 12505 4.7 + Prom 12695 - 12754 7.1 13 11 Tu 1 . + CDS 12801 - 13502 189 ## gi|194436782|ref|ZP_03068882.1| hypothetical protein EC1011_2486 + Term 13545 - 13584 -0.5 14 12 Tu 1 . - CDS 14233 - 14841 208 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|223713541|gb|ACDM01000057.1| GENE 1 150 - 1034 535 294 aa, chain - ## HITS:1 COG:ECs0309 KEGG:ns NR:ns ## COG: ECs0309 COG0583 # Protein_GI_number: 15829563 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 294 7 300 300 504 83.0 1e-143 MAKRENYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLS LTHAGELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQR YPDIRLELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYG FPQTPTDLVGHPCIAYQFGDGSLYAWELNQDGKKITHQPQGQWAFADSYMEAKAARLGLG LAYVPEELVSDDIEQGALIRVLQCYSQRLEGSYIYYPHRNVSPALRAVIDTLRI >gi|223713541|gb|ACDM01000057.1| GENE 2 1283 - 2341 692 352 aa, chain + ## HITS:1 COG:ECs0310 KEGG:ns NR:ns ## COG: ECs0310 COG1073 # Protein_GI_number: 15829564 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1 352 27 378 378 647 88.0 0 MSYADTTNPNAPVSQVEKWDKTFAESTKVDHRKVTFPNRYGITLVGDLYIPKDRGDRKMA AIAVSGPFGAVKEQSSGLYAQTLAERGFVTLAFDPSYTGESGGYPRNVASPDINTEDFSA AVDFLGLQKEVDRNRIGLLGICGWGGMALNDAAMDTRVKAVASSVMYDMSRAMGHGVGDG KDRYTTADRRAVLQYLNMQRWKDAENGAFAPGGHDIYVDEKGNVTASDRILPETLPANSN PVLKEFFDYYRMPRGFHARSVNSTSAWNATMPLSFMNMPLLSYANEVTIPTLIVTGEKAH SRYFAEDAFKAIGSKEKELVIVPEANHVDLYDNVAGKIPFAKFEQFFKANLR >gi|223713541|gb|ACDM01000057.1| GENE 3 2518 - 3711 699 397 aa, chain + ## HITS:1 COG:ECs0311 KEGG:ns NR:ns ## COG: ECs0311 COG2814 # Protein_GI_number: 15829565 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli O157:H7 # 1 396 1 396 397 455 69.0 1e-128 MSTVSLKQLYGKTHAYWSGVFAMTLCVFVLIASEFMPVSLLTLIAHDLHVTEGLAGQGIA VSGALAVLTSLTISRITGDLNRKYLLLGLTALMAISGIVITIAPDYPVYMLGRALIGIVI GGFWSMSAATAIRLVPKQHVPRALAIFNGGNALATVVAAPLGSYLGTTIGWRGAFLCLVP LAIAAFIWQWVSLPPMESDKTQKLQRSVLRLFSVAIVPTGLLACGLFFMGQFALFTYVRP FLESVTRVGPSDLSLILLAIGVAGFVGTMIVSTFLNTIFYKTLIMIPLLMAAITGALLLV GHHIWAVAVLLSLWGLLATAAPTGWWTWIARALPEDAETGGGLMVAVIQLSIALGSTAGG LVFDSLGWRSAFGLSGLLLLGAVAMTCATSRQNRKAQ >gi|223713541|gb|ACDM01000057.1| GENE 4 4126 - 4617 -289 163 aa, chain + ## HITS:1 COG:no KEGG:c0299 NR:ns ## KEGG: c0299 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 23 163 1 141 141 259 99.0 3e-68 MYVAELVTGDPAVFNSESCAAHLPQNPGTPAQSFHSTVFLGGTTTSGNTFRLFVDFSGQF QRNGTISTFITPFLLLPGTFQFIHNIAALLAFLPILKMRTKHPYMMYRLNCQGLVSESLR LACSFRNVPVMKNRKFSLCCKMYPLILRFRFLCVFNSLYLLSF >gi|223713541|gb|ACDM01000057.1| GENE 5 6044 - 6244 79 66 aa, chain + ## HITS:1 COG:no KEGG:c0304 NR:ns ## KEGG: c0304 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 66 1 66 66 121 100.0 6e-27 MAQYDDDEHALQVSMQGRGYHHFRILPHLPETTGISYGYRQPLCGMPGARTDPSDPSVLR SASDGR >gi|223713541|gb|ACDM01000057.1| GENE 6 6147 - 6749 447 200 aa, chain - ## HITS:1 COG:no KEGG:c0305 NR:ns ## KEGG: c0305 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 200 3 202 202 408 99.0 1e-113 MKPQYQTRYELLHESYQKWLTGFTRHAVSWGVCHPNIHYFHNLTPGWVSFNGEKPKIAIV PRSLHRLIYGSDKRATPPLDDDLVVNLCTSEHLLVHHPMLEGILLSECERLRQRSLANKL ISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTENLKRKSEKELGEWIIDRQKQNAALT DLMDQYVLLAYRTTVDGNRN >gi|223713541|gb|ACDM01000057.1| GENE 7 6843 - 7049 328 68 aa, chain - ## HITS:1 COG:Z1188 KEGG:ns NR:ns ## COG: Z1188 COG3311 # Protein_GI_number: 15800709 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 EDL933 # 9 58 15 64 65 78 70.0 3e-15 MTTPVSLMDDQMVDMTFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAWLQ ARIAQSRP >gi|223713541|gb|ACDM01000057.1| GENE 8 7433 - 8200 137 255 aa, chain - ## HITS:1 COG:no KEGG:ECP_2999 NR:ns ## KEGG: ECP_2999 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 255 9 263 263 494 95.0 1e-138 MTSDETLRIVDEYCHTHKLSRSKVINTLLNATAPVLNDINCYYQLAGELQSRLLNGVYQR NLPHKRNVVSAEKYCLEIWENKLFTRSVLEFDSSNGVLYALKHKRHYRRDKMIGRVESRY IKDICEYQMQLSGEKTKYACFIYIERTIYNHDNPPDETPVKSAVGNAVILLAKDVIYNEY FFDLRKSFFVSVKDLMASGTKGIPETQKYPDVYCWIPLFSINSGVVITPVYKIDPRKPVT VKKPDQITVVCNYRE >gi|223713541|gb|ACDM01000057.1| GENE 9 9641 - 10240 134 199 aa, chain + ## HITS:1 COG:no KEGG:c0309 NR:ns ## KEGG: c0309 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 199 1 199 199 405 98.0 1e-112 MKTYNTNPGYEMDPQLLTHFNQHLDSLFGVYSKLLPFRMDFAYRKNTLSYRCACRYAMCA EILRLINEVGEKLVGYAWVMEYTERKGLHIHFVGYLNGQSHRSSYLVSRLMGDIWRRVTG GDGYYHWCRFNKNYPVNINHVIHYSDHKAVNALRYAISYLAKREQKECGIILKCSGLPEK SNRGRPRLGSPLPETYSLV >gi|223713541|gb|ACDM01000057.1| GENE 10 10612 - 10995 229 127 aa, chain + ## HITS:1 COG:no KEGG:c0310 NR:ns ## KEGG: c0310 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 127 3 129 129 239 99.0 2e-62 MYAKSFIAFDGNGRLTGARTAQTAPYDRYTCHLCGSALRYHPQYDTERPWFEHTDDGLTE HGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASRHCRQCHHDYYGERYCTHSHTGHF SEEGVAE >gi|223713541|gb|ACDM01000057.1| GENE 11 10992 - 11417 248 141 aa, chain + ## HITS:1 COG:no KEGG:c0311 NR:ns ## KEGG: c0311 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 141 1 141 141 279 97.0 2e-74 MNGIKTGLGITPGEHIISADSALSRNIRQCFCLSCHGRLILQTDAQGAWFEHDLHVLSEQ QKAACVVLNPEKSHPYIEDMEMFLSLLPVVLEWHCVMCEQFFHGKKFCEACGTGIYCRAV CTKSVYSYQPDLFQDCGGAST >gi|223713541|gb|ACDM01000057.1| GENE 12 11889 - 12455 437 188 aa, chain + ## HITS:1 COG:no KEGG:c0313 NR:ns ## KEGG: c0313 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 188 1 188 188 380 98.0 1e-104 MYTESNVKLSCNALWQKCVLATLYRAAATHPEIKLLQFKLIPGQGINKAIPSLMADFTGE LHRLISEYLQCKRRKEQSVEPTPLYYLWSREAVANDTTPYLMVLLLNNDVWCKSREVVVL RNLIEQAWGKVLGEDNSITHLVVYPEVLSLVFDAANTYNAEPAVLEQTARAYIESHGTIE RHLGCSDF >gi|223713541|gb|ACDM01000057.1| GENE 13 12801 - 13502 189 233 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|194436782|ref|ZP_03068882.1| ## NR: gi|194436782|ref|ZP_03068882.1| hypothetical protein EC1011_2486 [Escherichia coli 101-1] # 1 233 1 233 233 485 100.0 1e-135 MFGHLLRYFSFCKKDLLVFHPESDYSDNLHKAFSFTKRLGFNEEWNGVTKNKEYDYQDVF SHVCLQSGVTDFSASAGQCLKWSHYFQPYFENILECRVWVTVGQLWKQERFIYNPSVADF QRWSEKGIQPEDFRHHSGFNFHAWLTTENGVIVDVSFMSTLSRRLPEHLSEVSGSVIIGT PETVLPEYKYVPMIVGQRIVEKIEKRSFIGFLAHDDIDLYTVPAILVPVWKEC >gi|223713541|gb|ACDM01000057.1| GENE 14 14233 - 14841 208 202 aa, chain - ## HITS:1 COG:alr8016 KEGG:ns NR:ns ## COG: alr8016 COG3464 # Protein_GI_number: 17227390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 10 198 434 633 636 98 31.0 9e-21 MSTRPPKRGLLDPWREWLKEQRESGNYNASRIWREMVARGFTGSETIVRDAVAKWRKGWN PPVTTAVRLPSVSRVSRWLMPWRITRDEENYASRFISLMCEKEPELKIAQQLALEFYRIL KTQNKSQLSSWFTRVHESGSAEFRRVAAGMEADAAAICEAISSHWSNGVVEGHVNRLKML KRQMYGRAGFELLRQRVMSPLA Prediction of potential genes in microbial genomes Time: Mon May 16 19:10:28 2011 Seq name: gi|223713540|gb|ACDM01000058.1| Escherichia sp. 4_1_40B cont1.58, whole genome shotgun sequence Length of sequence - 4130 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 128 - 167 3.4 1 1 Tu 1 . - CDS 396 - 1121 422 ## COG2188 Transcriptional regulators - Prom 1180 - 1239 3.7 + Prom 1049 - 1108 3.1 2 2 Op 1 3/0.000 + CDS 1244 - 2041 302 ## COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold 3 2 Op 2 . + CDS 2073 - 3422 1073 ## COG0477 Permeases of the major facilitator superfamily 4 2 Op 3 . + CDS 3428 - 4130 595 ## COG3053 Citrate lyase synthetase Predicted protein(s) >gi|223713540|gb|ACDM01000058.1| GENE 1 396 - 1121 422 241 aa, chain - ## HITS:1 COG:BH0914 KEGG:ns NR:ns ## COG: BH0914 COG2188 # Protein_GI_number: 15613477 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 11 218 14 220 248 100 29.0 3e-21 MHRNLPIYLQIREALRNGIAQNVYKQGERLPSENELAAQFNTTRATVVHAMQGLLTDGLI ERIRGRGTFVKKPSIITVMDTQSLGFFEKDLVGVDKHLEYQLVEFAPVSTSELLRTKLML SGKESIHRLLRLRLINQQPIAFEIRYMPSILALQIDKQELEVHALQNIFEQALRIEIQTI ANQVHVALPSRDAAQKLKIKRSRPILVRQHTYLTAENKPVLWGETLYREEYEIHYSSHRQ A >gi|223713540|gb|ACDM01000058.1| GENE 2 1244 - 2041 302 265 aa, chain + ## HITS:1 COG:RSp0233 KEGG:ns NR:ns ## COG: RSp0233 COG3618 # Protein_GI_number: 17548454 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Ralstonia solanacearum # 4 256 39 291 302 231 48.0 1e-60 MIFDTHAHVFVRGLPLAEHCRYVPDYDATPESYLTHLDRFGIDVGILVQPSFLGTDNHYM LEALRRYPTRFRGVAVVDPNITRCKLDEMAKLGVTGIRLNLVGVEIPDLTQPAWQHLLEH IKALGWHVELHRAARDLPALITVLLKSGVKIVVDHFALPSQEEKQNDPGFQFLLEHAETQ QIWLKLSGAYRNGSTETLNDNVAPLIPLLLQHFGPAHLLWGSDWPHTRYENVVNYQKTFE LLTQQIPDKEMRNKILSVSAESLID >gi|223713540|gb|ACDM01000058.1| GENE 3 2073 - 3422 1073 449 aa, chain + ## HITS:1 COG:AF0907 KEGG:ns NR:ns ## COG: AF0907 COG0477 # Protein_GI_number: 11498512 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Archaeoglobus fulgidus # 8 439 17 419 419 91 22.0 2e-18 MIIFYKKSWYKWIVLVVCILAYSSGNLVRWNYTGISQYLIGEWHIGKEELGILGSAFFYA YAIGQSPWGTLTDILGGRRVISIGILITAIMFSLFAFAGGYHAAIIIRVLMGFVGAATFV PCMAVLSRWFSKKERGMVLNIFSGTGGGLGELWSFLLMPLISLFMVGGATVLGLSSWRAS TLIMAFVTLAIMILCFVGMRSDPSELGLPSVVEQETRKQAKEHSYARTLLNALRDPWFWV ITFAWQGFTVSLRLLPAWLPIYAAAYYKQTQGLSSVEAMVAGGMIASVYVAGRILGTPVF GKLSDFLLVSYNVPRTLIIACFHIFITVSMFALSHQMPSTFLFAVLVFVIGAAINMFPLV NAVVAEIWPVKTGGALMGMVNTVGQLIGASALAYSGFMAEKFSIAGAGYSFEYRGIWYLA MIFSSISILASLLAMHREKQSIRENALSH >gi|223713540|gb|ACDM01000058.1| GENE 4 3428 - 4130 595 234 aa, chain + ## HITS:1 COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1 234 30 264 381 471 97.0 1e-133 MFNHIFTQVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTRDEKLIACGGIAGNIIKC VAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYEALFRQCGFSTLTSVPGVMV LMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTQGHRYLIQQAAAQCDWLHLFLVK EDSSRFPYEDRLDLVLKGTADIPHLTVHRGSEYIISRATFPCYFIKEQSVINHC Prediction of potential genes in microbial genomes Time: Mon May 16 19:10:29 2011 Seq name: gi|223713539|gb|ACDM01000059.1| Escherichia sp. 4_1_40B cont1.59, whole genome shotgun sequence Length of sequence - 1341 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1246 1389 ## COG3051 Citrate lyase, alpha subunit Predicted protein(s) >gi|223713539|gb|ACDM01000059.1| GENE 1 2 - 1246 1389 414 aa, chain + ## HITS:1 COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1 414 97 510 510 811 99.0 0 SSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSG ELNIDVAFLGVPSCDEFGNANGYSGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPA SIEQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQS LARNPNHIEISANQYANWGAKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRGASGG HCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAER LQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQVKE Prediction of potential genes in microbial genomes Time: Mon May 16 19:10:32 2011 Seq name: gi|223713538|gb|ACDM01000060.1| Escherichia sp. 4_1_40B cont1.60, whole genome shotgun sequence Length of sequence - 7072 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 + CDS 3 - 212 76 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 2 1 Op 2 . + CDS 187 - 1074 580 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 3 1 Op 3 . + CDS 1100 - 3697 2976 ## COG1049 Aconitase B + Term 3763 - 3814 13.6 - Term 3755 - 3797 12.1 4 2 Op 1 . - CDS 3946 - 4482 124 ## COG3436 Transposase and inactivated derivatives 5 2 Op 2 . - CDS 4522 - 4707 93 ## EcSMS35_4770 hypothetical protein - Prom 4861 - 4920 3.9 6 3 Tu 1 . - CDS 4949 - 5461 84 ## UTI89_C1104 hypothetical protein - Prom 5599 - 5658 2.5 + Prom 5440 - 5499 2.5 7 4 Op 1 2/0.000 + CDS 5624 - 6259 564 ## COG2721 Altronate dehydratase 8 4 Op 2 . + CDS 6278 - 6778 410 ## COG2721 Altronate dehydratase + Term 6937 - 6979 2.1 - Term 6786 - 6840 0.8 9 5 Tu 1 . - CDS 6841 - 7038 166 ## COG1349 Transcriptional regulators of sugar metabolism Predicted protein(s) >gi|223713538|gb|ACDM01000060.1| GENE 1 3 - 212 76 69 aa, chain + ## HITS:1 COG:ECs0653 KEGG:ns NR:ns ## COG: ECs0653 COG3697 # Protein_GI_number: 15829907 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Escherichia coli O157:H7 # 1 69 115 183 183 142 98.0 1e-34 HPLGRLWDIDVLTPEGDILSRRDYSLPPRRCLLCEQSAAVCARGKTHQLTDLLNRMEALL NDVDACNVN >gi|223713538|gb|ACDM01000060.1| GENE 2 187 - 1074 580 295 aa, chain + ## HITS:1 COG:citG KEGG:ns NR:ns ## COG: citG COG1767 # Protein_GI_number: 16128596 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Escherichia coli K12 # 1 292 1 292 292 553 98.0 1e-157 MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDRINCGAHKDMALEDFHR SALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDMFRATAGVNTHKGSIFSLG LLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTNNSQLTAGQRLYQQLGLTGAR GEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLLLMATNGDTNVASRGGEGGLRWL QREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSPGGSADLLIVTWFLASLTGR >gi|223713538|gb|ACDM01000060.1| GENE 3 1100 - 3697 2976 865 aa, chain + ## HITS:1 COG:ECs0122 KEGG:ns NR:ns ## COG: ECs0122 COG1049 # Protein_GI_number: 15829376 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Escherichia coli O157:H7 # 1 865 1 865 865 1691 99.0 0 MLKEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA AYVKAGFLAAVAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDHRTLERRIQGMEKWLANPELLEA DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA GKLLDAHKGQLPTRLWVAPPTRMDSAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT YRYLNFNQLSQYTEKADRVIFPSVV >gi|223713538|gb|ACDM01000060.1| GENE 4 3946 - 4482 124 178 aa, chain - ## HITS:1 COG:ECs0330 KEGG:ns NR:ns ## COG: ECs0330 COG3436 # Protein_GI_number: 15829584 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 2 176 332 512 512 215 55.0 4e-56 MAHSRRRIHDVHVRVPTDITTEALQRIGELYATEAEVRGCSAEQRLAARKARAAPLMQSL YDWIQTQMKTLSRHSDTAKAFAYLLKQWDGLNVYCSNGWVEIDNNIAENALRGVAVGRKN WLFVGSDNGGEHAAVLYSLIGTCRLNNEEPENGCVTSLNISRTGRQTGYVICCPGKLN >gi|223713538|gb|ACDM01000060.1| GENE 5 4522 - 4707 93 61 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_4770 NR:ns ## KEGG: EcSMS35_4770 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 56 52 107 207 110 92.0 2e-23 MDYVTSFELPFRLLLTCTPQLIAMLREEWDISQKNVVFNDKRFGCVYSLKASLCGVLQAD A >gi|223713538|gb|ACDM01000060.1| GENE 6 4949 - 5461 84 170 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C1104 NR:ns ## KEGG: UTI89_C1104 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 170 1 170 170 288 86.0 5e-77 MQITEALLSEPGDIWRFVQQAVDHWPRLLAVHFTLYSAEGNINGQQIHAFCTAFYRQVQE HITERNHTASPAPPVVLRWLLEQHGEATIRCLLLLSQASICHLRVSATVDEECSQVVDLL QQTWSGINAGGQCRLESCFQVDRSGTLDQFVVLKTTVQSLMLPVMATIAR >gi|223713538|gb|ACDM01000060.1| GENE 7 5624 - 6259 564 211 aa, chain + ## HITS:1 COG:ECs4006 KEGG:ns NR:ns ## COG: ECs4006 COG2721 # Protein_GI_number: 15833260 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli O157:H7 # 7 210 73 349 523 285 57.0 6e-77 MVKSFAIGYTVRDVAKGSWIDESTVTLPKAPPLNTLPRATKVPEPLPPQEDYTFEGYRNA DGSVGTKNLLGITTSVHCMADVEDYVVKIIERDLLPKYPSIDGVVDLNHLYGCGVAINVP AAVVPIRTIHNIALNPNFGGEVMVVGMQCGGSDAFSGVTTNPAVGYDSDLLVRCGATVMF SEVTEVRDAIHLLTPRAINEEVGRRLLEEMA >gi|223713538|gb|ACDM01000060.1| GENE 8 6278 - 6778 410 166 aa, chain + ## HITS:1 COG:yhaG KEGG:ns NR:ns ## COG: yhaG COG2721 # Protein_GI_number: 16131020 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli K12 # 1 165 358 522 523 325 96.0 3e-89 MGKTDRSANPSPGNKKGGLANVVKKALGSIAKSGKTAIVEVLSPGQHPTKRGLIYAATPA SDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTGLANHWFDLMDINAGTIAT GEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVA >gi|223713538|gb|ACDM01000060.1| GENE 9 6841 - 7038 166 65 aa, chain - ## HITS:1 COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 60 210 269 269 110 96.0 7e-25 MCEVAERIIVVTDSSKFNRSSLHKIIDTKRIDMIIVDEGIPADSLEGLRKAGIEVILVGE LASSL Prediction of potential genes in microbial genomes Time: Mon May 16 19:10:38 2011 Seq name: gi|223713537|gb|ACDM01000061.1| Escherichia sp. 4_1_40B cont1.61, whole genome shotgun sequence Length of sequence - 5923 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 3.4 1 1 Op 1 1/0.000 + CDS 94 - 498 147 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 552 - 596 5.7 + Prom 500 - 559 6.5 2 1 Op 2 3/0.000 + CDS 677 - 2182 1688 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 3 1 Op 3 . + CDS 2194 - 3369 956 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 4 1 Op 4 . + CDS 3383 - 5272 1820 ## UTI89_C1098 hypothetical protein + Term 5331 - 5363 2.2 - Term 5314 - 5351 0.2 5 2 Tu 1 . - CDS 5441 - 5647 285 ## COG0313 Predicted methyltransferases - Prom 5855 - 5914 1.6 Predicted protein(s) >gi|223713537|gb|ACDM01000061.1| GENE 1 94 - 498 147 134 aa, chain + ## HITS:1 COG:ECs4017 KEGG:ns NR:ns ## COG: ECs4017 COG0191 # Protein_GI_number: 15833271 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 49 128 205 284 286 136 80.0 1e-32 MTQYELKQNERLISQKSELERKVKHLTEMVRQYKAGKTNGIYAVCFARFVLHGASDVPDE YVRRTIGPGVCKVNVATELKIAFSDAIKAWFAENQQSNDPCFYMRVGMDTMKEVVRSKIA VCGSANRLRLPAEA >gi|223713537|gb|ACDM01000061.1| GENE 2 677 - 2182 1688 501 aa, chain + ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 426 23 450 450 412 51.0 1e-114 MFPVSLLAFMGLLLGIGSSVTSPSTITSFPFLGGEFTQLTFGFIAMVGGFAFTYLPLMFA MAIPMGLAKRNKAVAAFAGFVGYMLMNMSINYYLTATHQLADPATMKQVGQSIVLGIQTL EMGVLGGIVVGVITYFLHDRFQDTVLHDAFAFFSGIRFVPIITALTLSLVGLFIPMLWEY VALGIAGIGHIIQSTSVFGPFLYGVGVLLLKPFGLHHILLAMVRFTPAGGIEMVNGHEVA GALNIFYAELKAGLPFSPHVTAFLSQGFMPTFIFGLPAVAYAIYRTARPENRPVIKGLLL SGVLVSVVTGISEPIEFLFLFIAPALYAFHIVMSGLALMVMALLGVTIGNTDGGILDLLI FGVMQGMSTKWYLLFPVGIAWFAIYFFVFRWYILKHNIKTPGREVDVQGAQQAVEANTRA RGKSKYDHELILRALGGKENIESLDNCITRLRLVVKDMGLIDQQALKAAGALSVVVLDAH SVQVIIGPQVQSVKTGIEALI >gi|223713537|gb|ACDM01000061.1| GENE 3 2194 - 3369 956 391 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1 386 1 377 384 291 34.0 1e-78 MFDFDKIIERQSDKCRKWDHTFVCSRFGDVPESFIPLWIADMDFTSPPAVIDGFRRIVEH GTFGYTWCFDEFYDAVIAFQRKRHQVEVEKSWITLTYGTVSTLHYTVQAFCKPGDSVMMN TPVYDPFAMAAQRQGVQVLANPLRVEENRYQLDFNLIEEQLKTHRPTLWFFCSPHNPSGR IWREEEIRQVSDLCQRYGTILVVDEVHAEHILDGKFVSCLTSGCAAQDNLIVLTSPNKAF NLGGLKTSYSMIPDDSLRQRFRQQLEKNSITSPNLFGVWGIILAYQHGLPWLDALNGYLQ GNARYLADALQTHFPAWKMMNPESSYLAWIDVSADERSATQLTQHFARQAGVVIEDGSHY VQNGENYLRINFGTQRYWLEQSINRMLKNDK >gi|223713537|gb|ACDM01000061.1| GENE 4 3383 - 5272 1820 629 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C1098 NR:ns ## KEGG: UTI89_C1098 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 629 38 666 666 1197 93.0 0 MKKVLTLSLLALCVSHGAAAANYALNNDNIALLFDDTNSTVVVKDNKANHPLTPQELFFL TLPDESKIHTADFKIKHVEKQDNAIVIDFTHPDFNVTVKLNLVKGKYANIGYTIAAVGQP RDVAKITFFPTQKQSQAPYVDGAINSSPIVADSFFILPDKPIVNTYAYEATTNLNVELKT PIQPEAPVSFTTWFGTFPETSQLRRSVNQFINDVRPRPYKPYLHYNSWMDIGFFTPYTEQ DVLGRMDEWNKEFITGRGVALDAFLLDDGWDDLTGRWLFGTAFRNGFSKVREKADSLHSS VGLWLSPWGGYNKPRDVRVSHAKEYGFETVDGKLALSGANYFKNFNERIIKLIKNEHITS FKLDGMGNASSHIKGSSFASDFDASIALLHNMRSATPNLFINLTTGTDASPSWLFYADSI WRQGDDINLYGSGTPVQQWMTYRDAETYRSIVRKGPLFPLNSLMYHGIVSAENAYYGLEK VQTDSDFADQVWSYFATGTQLQELYITPSMLNKVKWDTLAKAAKWSKENASVLVDTHWIG GDPTALAVYGWASWSKDKAILGLRNPSDKPQTYYLDLAKDFEIPTGDAAQFSLKAVYGSN KTVPVEYKNATVITLQPLETLVFEAVPVN >gi|223713537|gb|ACDM01000061.1| GENE 5 5441 - 5647 285 68 aa, chain - ## HITS:1 COG:STM3263 KEGG:ns NR:ns ## COG: STM3263 COG0313 # Protein_GI_number: 16766561 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Salmonella typhimurium LT2 # 10 68 190 253 287 87 70.0 4e-18 MAPLNDALYRYVMNSRLGTIHGTSVGELLAWIKEDKNPRKGEMVLIIEGHKAQDDELPAN ALRTLALL Prediction of potential genes in microbial genomes Time: Mon May 16 19:11:42 2011 Seq name: gi|223713536|gb|ACDM01000062.1| Escherichia sp. 4_1_40B cont1.62, whole genome shotgun sequence Length of sequence - 181656 bp Number of predicted genes - 169, with homology - 168 Number of transcription units - 98, operones - 42 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.243 - CDS 2 - 464 288 ## COG3436 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 495 - 845 245 ## COG3436 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 929 - 1294 209 ## COG1846 Transcriptional regulators + Prom 2049 - 2108 7.3 4 2 Tu 1 . + CDS 2230 - 2547 221 ## COG2963 Transposase and inactivated derivatives + Term 2597 - 2649 0.1 5 3 Op 1 11/0.000 - CDS 2952 - 3422 197 ## COG2801 Transposase and inactivated derivatives - Prom 3467 - 3526 2.1 - Term 3470 - 3504 -0.3 6 3 Op 2 3/0.514 - CDS 3531 - 3962 159 ## COG2801 Transposase and inactivated derivatives - Term 4441 - 4484 8.1 7 4 Op 1 . - CDS 4485 - 5747 365 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 8 4 Op 2 . - CDS 5811 - 6032 87 ## EC55989_4689 hypothetical protein - Prom 6065 - 6124 2.6 - TRNA 5945 - 6020 84.1 # Phe GAA 0 0 9 4 Op 3 . - CDS 6126 - 6833 575 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - Prom 7042 - 7101 3.8 + Prom 7053 - 7112 3.8 10 5 Tu 1 . + CDS 7232 - 9367 1876 ## COG1982 Arginine/lysine/ornithine decarboxylases + Term 9379 - 9412 -0.4 - Term 9361 - 9406 12.1 11 6 Tu 1 . - CDS 9416 - 10672 1584 ## COG0477 Permeases of the major facilitator superfamily - Prom 10778 - 10837 6.2 12 7 Op 1 6/0.135 - CDS 10874 - 11956 946 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 13 7 Op 2 11/0.000 - CDS 12018 - 12293 341 ## COG2924 Fe-S cluster protector protein 14 7 Op 3 . - CDS 12321 - 13373 1080 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 - Prom 13483 - 13542 2.5 + Prom 13442 - 13501 3.6 15 8 Op 1 4/0.405 + CDS 13534 - 14253 735 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 16 8 Op 2 . + CDS 14253 - 14579 451 ## COG3171 Uncharacterized protein conserved in bacteria + Term 14722 - 14752 3.0 17 9 Tu 1 . + CDS 14766 - 15482 945 ## ECO111_3709 hypothetical protein + Term 15492 - 15538 5.1 + Prom 15518 - 15577 6.0 18 10 Tu 1 . + CDS 15658 - 16704 1279 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 16712 - 16744 5.4 + Prom 16733 - 16792 5.1 19 11 Tu 1 . + CDS 16821 - 17828 849 ## ECED1_3419 hypothetical protein + Term 17850 - 17901 7.1 20 12 Op 1 13/0.000 - CDS 17893 - 19029 1044 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 21 12 Op 2 2/0.811 - CDS 19022 - 19615 1007 ## PROTEIN SUPPORTED gi|26249375|ref|NP_755415.1| putative deoxyribonucleotide triphosphate pyrophosphatase 22 12 Op 3 6/0.135 - CDS 19623 - 19913 286 ## COG1872 Uncharacterized conserved protein 23 12 Op 4 5/0.243 - CDS 19910 - 20476 814 ## COG0762 Predicted integral membrane protein 24 12 Op 5 . - CDS 20494 - 21198 658 ## COG0325 Predicted enzyme with a TIM-barrel fold - Prom 21243 - 21302 3.0 + Prom 20908 - 20967 3.5 25 13 Tu 1 . + CDS 21216 - 22196 829 ## COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT + Term 22415 - 22444 0.5 - Term 22215 - 22251 1.1 26 14 Op 1 8/0.027 - CDS 22370 - 22786 515 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 27 14 Op 2 2/0.811 - CDS 22786 - 23349 643 ## COG1678 Putative transcriptional regulator - Prom 23386 - 23445 3.2 - Term 23367 - 23423 3.4 28 15 Op 1 2/0.811 - CDS 23458 - 24408 356 ## PROTEIN SUPPORTED gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme 29 15 Op 2 3/0.514 - CDS 24421 - 25152 628 ## COG1385 Uncharacterized protein conserved in bacteria 30 15 Op 3 6/0.135 - CDS 25232 - 25939 453 ## COG2356 Endonuclease I - Prom 25961 - 26020 4.1 31 16 Op 1 4/0.405 - CDS 26034 - 26585 489 ## COG3091 Uncharacterized protein conserved in bacteria 32 16 Op 2 4/0.405 - CDS 26608 - 28002 1748 ## COG0477 Permeases of the major facilitator superfamily - Prom 28103 - 28162 8.8 - Term 28383 - 28415 3.0 33 17 Tu 1 . - CDS 28438 - 29592 1343 ## COG0192 S-adenosylmethionine synthetase + Prom 29830 - 29889 6.2 34 18 Op 1 . + CDS 30010 - 30153 59 ## gi|188495354|ref|ZP_03002624.1| hypothetical protein Ec53638_2979 + Term 30169 - 30200 1.1 + Prom 30307 - 30366 4.0 35 18 Op 2 . + CDS 30387 - 32363 2309 ## COG1166 Arginine decarboxylase (spermidine biosynthesis) + Term 32381 - 32425 11.0 + Prom 32424 - 32483 7.9 36 19 Tu 1 . + CDS 32509 - 33240 526 ## ECIAI39_3357 conserved hypothetical protein; putative exported protein + Term 33308 - 33352 7.4 + Prom 33297 - 33356 3.0 37 20 Tu 1 . + CDS 33376 - 34296 1290 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family + Term 34409 - 34448 4.3 - Term 34214 - 34245 -0.5 38 21 Tu 1 . - CDS 34344 - 35102 792 ## COG0501 Zn-dependent protease with chaperone function - Prom 35124 - 35183 5.0 + Prom 35242 - 35301 3.8 39 22 Tu 1 . + CDS 35380 - 37371 2447 ## COG0021 Transketolase + Term 37389 - 37428 8.2 40 23 Tu 1 . - CDS 37417 - 38325 1013 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 38516 - 38575 7.0 + Prom 38539 - 38598 6.0 41 24 Op 1 3/0.514 + CDS 38702 - 39145 325 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 42 24 Op 2 2/0.811 + CDS 39173 - 40561 1708 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 43 24 Op 3 2/0.811 + CDS 40576 - 41853 1275 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 44 24 Op 4 3/0.514 + CDS 41850 - 42815 846 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins 45 24 Op 5 3/0.514 + CDS 42837 - 43346 343 ## COG3722 Transcriptional regulator 46 24 Op 6 1/0.919 + CDS 43343 - 44056 383 ## COG1072 Panthothenate kinase + Term 44285 - 44322 1.5 + Prom 44150 - 44209 2.4 47 25 Op 1 26/0.000 + CDS 44341 - 45360 816 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 48 25 Op 2 9/0.027 + CDS 45410 - 46573 1443 ## COG0126 3-phosphoglycerate kinase + Term 46583 - 46613 3.0 + Prom 46588 - 46647 6.2 49 26 Tu 1 4/0.405 + CDS 46788 - 47867 1174 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 47892 - 47920 2.1 + Prom 48082 - 48141 3.9 50 27 Tu 1 . + CDS 48225 - 49085 1039 ## COG0668 Small-conductance mechanosensitive channel + Term 49094 - 49133 5.0 + Prom 49137 - 49196 5.7 51 28 Op 1 5/0.243 + CDS 49224 - 49859 609 ## COG1279 Lysine efflux permease 52 28 Op 2 2/0.811 + CDS 49952 - 50692 781 ## COG2968 Uncharacterized conserved protein + Term 50715 - 50748 -0.3 + Prom 50718 - 50777 6.2 53 29 Tu 1 . + CDS 50859 - 51755 766 ## COG0583 Transcriptional regulator 54 30 Op 1 . - CDS 51752 - 53230 1086 ## COG0427 Acetyl-CoA hydrolase 55 30 Op 2 . - CDS 53254 - 54039 917 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 56 30 Op 3 6/0.135 - CDS 54050 - 55045 861 ## COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family 57 30 Op 4 3/0.514 - CDS 55038 - 57182 2299 ## COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit - Prom 57300 - 57359 4.0 - Term 57339 - 57372 2.7 58 31 Tu 1 . - CDS 57386 - 58279 889 ## COG0583 Transcriptional regulator - Prom 58309 - 58368 1.5 + Prom 58319 - 58378 3.4 59 32 Op 1 . + CDS 58421 - 58651 168 ## COG0583 Transcriptional regulator 60 32 Op 2 8/0.027 + CDS 58707 - 59366 822 ## COG0120 Ribose 5-phosphate isomerase + Prom 59517 - 59576 4.4 61 33 Tu 1 . + CDS 59622 - 60854 1483 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 60876 - 60912 7.1 - Term 61035 - 61066 3.2 62 34 Tu 1 . - CDS 61243 - 61845 408 ## COG0212 5-formyltetrahydrofolate cyclo-ligase + Prom 61764 - 61823 2.0 63 35 Tu 1 . + CDS 61878 - 62141 105 ## ECIAI1_3030 hypothetical protein 64 36 Tu 1 . - CDS 62091 - 62420 340 ## COG3027 Uncharacterized protein conserved in bacteria - Prom 62479 - 62538 3.1 + Prom 62500 - 62559 1.5 65 37 Op 1 5/0.243 + CDS 62588 - 63166 663 ## COG3079 Uncharacterized protein conserved in bacteria 66 37 Op 2 8/0.027 + CDS 63192 - 64517 1359 ## COG0006 Xaa-Pro aminopeptidase 67 37 Op 3 8/0.027 + CDS 64514 - 65692 999 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 68 37 Op 4 5/0.243 + CDS 65715 - 66917 1350 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Term 66961 - 66996 4.1 69 38 Op 1 18/0.000 + CDS 67365 - 68459 1360 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) 70 38 Op 2 12/0.000 + CDS 68483 - 68872 554 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 68902 - 68946 2.3 + Prom 68910 - 68969 1.8 71 38 Op 3 1/0.919 + CDS 68991 - 71864 3454 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain + Term 71890 - 71915 -0.5 72 39 Tu 1 . + CDS 72131 - 72874 253 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 73 40 Tu 1 . - CDS 72931 - 74364 1698 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 74394 - 74453 3.3 + Prom 74116 - 74175 3.3 74 41 Tu 1 . + CDS 74409 - 74720 407 ## COG3097 Uncharacterized protein conserved in bacteria + Prom 74750 - 74809 3.5 75 42 Tu 1 . + CDS 74884 - 75543 698 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 75699 - 75747 3.1 76 43 Tu 1 . - CDS 75739 - 76719 1062 ## COG0354 Predicted aminomethyltransferase related to GcvT - Prom 76752 - 76811 3.1 + Prom 76670 - 76729 3.7 77 44 Op 1 . + CDS 76962 - 77228 310 ## COG2938 Uncharacterized conserved protein 78 44 Op 2 . + CDS 77209 - 77616 251 ## SSON_3049 hypothetical protein + Term 77647 - 77697 2.6 - Term 77607 - 77649 1.2 79 45 Tu 1 . - CDS 77656 - 78177 786 ## COG0716 Flavodoxins - Prom 78209 - 78268 3.4 + Prom 78206 - 78265 4.9 80 46 Op 1 8/0.027 + CDS 78289 - 79185 833 ## COG4974 Site-specific recombinase XerD 81 46 Op 2 7/0.081 + CDS 79210 - 79920 752 ## COG1651 Protein-disulfide isomerase 82 46 Op 3 5/0.243 + CDS 79926 - 81659 1951 ## COG0608 Single-stranded DNA-specific exonuclease + Term 81683 - 81717 2.6 + Prom 81724 - 81783 1.7 83 47 Op 1 8/0.027 + CDS 81967 - 82848 995 ## COG1186 Protein chain release factor B 84 47 Op 2 . + CDS 82858 - 84375 2035 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 84396 - 84425 0.3 85 48 Tu 1 . - CDS 84419 - 84967 419 ## COG1443 Isopentenyldiphosphate isomerase - Prom 84992 - 85051 3.6 - Term 85040 - 85068 -0.3 86 49 Op 1 . - CDS 85090 - 85215 81 ## 87 49 Op 2 . - CDS 85217 - 86665 375 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Prom 86963 - 87022 6.0 88 50 Op 1 3/0.514 + CDS 87086 - 89020 1044 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 89 50 Op 2 . + CDS 89020 - 89508 250 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 + Term 89515 - 89551 6.7 - Term 89501 - 89538 6.1 90 51 Op 1 2/0.811 - CDS 89544 - 90911 1195 ## COG2252 Permeases 91 51 Op 2 4/0.405 - CDS 90947 - 92263 1422 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 92 51 Op 3 2/0.811 - CDS 92281 - 93681 292 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Term 93809 - 93836 1.5 93 52 Op 1 12/0.000 - CDS 93846 - 96716 2894 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 94 52 Op 2 2/0.811 - CDS 96713 - 97492 857 ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 95 52 Op 3 1/0.919 - CDS 97543 - 98871 1315 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 96 52 Op 4 3/0.514 - CDS 98874 - 101972 2690 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - Prom 102075 - 102134 10.7 97 53 Tu 1 . - CDS 102294 - 102872 213 ## COG2068 Uncharacterized MobA-related protein - Prom 102974 - 103033 6.3 98 54 Op 1 . + CDS 103143 - 103745 225 ## ECIAI1_2996 hypothetical protein 99 54 Op 2 . + CDS 103793 - 105418 1338 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 105607 - 105644 3.0 - Term 105590 - 105638 2.7 100 55 Op 1 . - CDS 105639 - 106571 1234 ## COG0549 Carbamate kinase 101 55 Op 2 4/0.405 - CDS 106619 - 108004 1031 ## COG0044 Dihydroorotase and related cyclic amidohydrolases - Term 108007 - 108039 5.0 102 56 Op 1 4/0.405 - CDS 108057 - 109268 1648 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 103 56 Op 2 2/0.811 - CDS 109326 - 110522 1169 ## COG1171 Threonine dehydratase - Term 110540 - 110573 5.2 104 56 Op 3 . - CDS 110580 - 111767 1470 ## COG0078 Ornithine carbamoyltransferase 105 57 Tu 1 . + CDS 112246 - 114024 1018 ## COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains + Term 114032 - 114074 11.1 106 58 Op 1 15/0.000 - CDS 114064 - 114543 333 ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs 107 58 Op 2 12/0.000 - CDS 114540 - 115418 622 ## COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 108 58 Op 3 . - CDS 115429 - 117726 1822 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs - Prom 117797 - 117856 3.5 + Prom 118056 - 118115 4.1 109 59 Tu 1 . + CDS 118141 - 118896 375 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 118997 - 119065 31.3 + TRNA 118975 - 119048 78.8 # Gly CCC 0 0 110 60 Op 1 . + CDS 119339 - 120817 601 ## COG0582 Integrase 111 60 Op 2 . + CDS 120810 - 121451 227 ## ROD_49471 hypothetical protein + Term 121566 - 121599 0.2 + Prom 121651 - 121710 7.4 112 61 Tu 1 . + CDS 121952 - 122515 402 ## ECO103_3437 hypothetical protein + Prom 122585 - 122644 5.1 113 62 Tu 1 . + CDS 122885 - 123112 219 ## gi|256024629|ref|ZP_05438494.1| hypothetical protein E4_14724 + Prom 123439 - 123498 6.6 114 63 Op 1 . + CDS 123559 - 124353 332 ## EcHS_A3023 hypothetical protein 115 63 Op 2 . + CDS 124399 - 125169 212 ## EcE24377A_3187 hypothetical protein + Prom 125816 - 125875 7.8 116 64 Tu 1 . + CDS 125907 - 126248 348 ## COG1886 Flagellar motor switch/type III secretory pathway protein + Prom 126274 - 126333 6.0 117 65 Op 1 7/0.081 + CDS 126385 - 126903 162 ## COG4790 Type III secretory pathway, component EscR 118 65 Op 2 8/0.027 + CDS 126913 - 127173 153 ## COG4794 Type III secretory pathway, component EscS + Prom 127588 - 127647 5.9 119 66 Op 1 2/0.811 + CDS 127706 - 127942 178 ## COG4791 Type III secretory pathway, component EscT 120 66 Op 2 . + CDS 127951 - 128682 351 ## COG1377 Flagellar biosynthesis pathway, component FlhB 121 66 Op 3 . + CDS 128709 - 129071 226 ## COG1377 Flagellar biosynthesis pathway, component FlhB + Term 129099 - 129141 7.1 122 67 Tu 1 . - CDS 129428 - 129928 166 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 130032 - 130091 5.9 + Prom 130023 - 130082 9.7 123 68 Op 1 . + CDS 130185 - 131366 304 ## ECO103_3424 type III secretion protein EprH 124 68 Op 2 . + CDS 131380 - 131619 281 ## ECUMN_3190 type III secretion system needle protein 125 68 Op 3 . + CDS 131639 - 131971 257 ## ECH74115_4132 type III secretion apparatus protein EprJ 126 68 Op 4 . + CDS 131968 - 132702 99 ## COG4669 Type III secretory pathway, lipoprotein EscJ + Term 132952 - 133005 1.1 + Prom 132940 - 132999 4.9 127 69 Tu 1 . + CDS 133240 - 133947 244 ## ECUMN_3186 hypothetical protein - Term 133681 - 133716 0.4 128 70 Tu 1 . - CDS 133869 - 134042 93 ## Z4177 hypothetical protein - Prom 134118 - 134177 6.7 + Prom 134012 - 134071 10.2 129 71 Op 1 . + CDS 134169 - 134324 120 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 130 71 Op 2 . + CDS 134358 - 134801 81 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 131 72 Tu 1 . - CDS 134846 - 135082 78 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 135143 - 135202 7.0 + Prom 135000 - 135059 7.4 132 73 Tu 1 . + CDS 135150 - 135338 88 ## ECSE_3112 hypothetical protein + Term 135356 - 135393 3.2 - Term 135342 - 135381 4.4 133 74 Tu 1 . - CDS 135405 - 135623 146 ## JW5456 hypothetical protein - Prom 135679 - 135738 4.7 134 75 Tu 1 . - CDS 135791 - 137170 218 ## COG0457 FOG: TPR repeat - Prom 137217 - 137276 5.3 - Term 137432 - 137480 11.3 135 76 Tu 1 . - CDS 137505 - 138029 142 ## COG0457 FOG: TPR repeat - Prom 138235 - 138294 5.7 + Prom 138646 - 138705 4.2 136 77 Tu 1 . + CDS 138904 - 139329 139 ## ECUMN_3178 hypothetical protein 137 78 Op 1 . - CDS 139478 - 139960 97 ## JW5455 hypothetical protein 138 78 Op 2 2/0.811 - CDS 139953 - 140288 178 ## COG3710 DNA-binding winged-HTH domains - Prom 140310 - 140369 3.4 - Term 141022 - 141061 6.1 139 79 Tu 1 . - CDS 141096 - 141614 172 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 141720 - 141779 4.7 - Term 142131 - 142177 13.1 140 80 Tu 1 . - CDS 142188 - 143417 615 ## COG0814 Amino acid permeases - Prom 143452 - 143511 4.3 + Prom 143566 - 143625 6.0 141 81 Tu 1 . + CDS 143672 - 144853 997 ## COG0183 Acetyl-CoA acetyltransferase + Prom 144979 - 145038 5.8 142 82 Op 1 9/0.027 + CDS 145248 - 145976 690 ## COG3717 5-keto 4-deoxyuronate isomerase 143 82 Op 2 9/0.027 + CDS 146006 - 146767 752 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 146788 - 146821 4.5 + Prom 146856 - 146915 6.5 144 83 Tu 1 . + CDS 147142 - 148500 1390 ## COG0477 Permeases of the major facilitator superfamily + Term 148507 - 148546 10.2 145 84 Tu 1 . + CDS 148629 - 149321 692 ## COG1794 Aspartate racemase + Term 149538 - 149586 -1.0 146 85 Tu 1 . - CDS 149308 - 150243 752 ## COG0583 Transcriptional regulator - Prom 150327 - 150386 6.7 + Prom 150273 - 150332 9.1 147 86 Tu 1 . + CDS 150365 - 151627 1213 ## COG0019 Diaminopimelate decarboxylase 148 87 Tu 1 . - CDS 151634 - 152665 918 ## COG1609 Transcriptional regulators + Prom 153155 - 153214 3.2 149 88 Op 1 5/0.243 + CDS 153250 - 155409 1985 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 150 88 Op 2 . + CDS 155402 - 156595 1331 ## COG0477 Permeases of the major facilitator superfamily + Term 156599 - 156636 8.0 - Term 156587 - 156624 8.0 151 89 Tu 1 . - CDS 156627 - 157667 1133 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 157693 - 157752 7.3 - Term 157733 - 157770 5.1 152 90 Tu 1 . - CDS 157775 - 157993 264 ## G2583_3488 hypothetical protein - Prom 158063 - 158122 3.6 - Term 158082 - 158127 2.7 153 91 Op 1 5/0.243 - CDS 158131 - 158844 794 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 154 91 Op 2 . - CDS 158913 - 159602 674 ## COG3066 DNA mismatch repair protein - Prom 159648 - 159707 4.7 + Prom 159649 - 159708 3.6 155 92 Tu 1 . + CDS 159788 - 159934 73 ## ECO103_3390 hypothetical protein + Prom 159988 - 160047 6.5 156 93 Op 1 7/0.081 + CDS 160287 - 160817 271 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 157 93 Op 2 5/0.243 + CDS 160830 - 163076 2099 ## COG3605 Signal transduction protein containing GAF and PtsI domains 158 94 Op 1 11/0.000 + CDS 163227 - 164102 1130 ## COG0682 Prolipoprotein diacylglyceryltransferase 159 94 Op 2 4/0.405 + CDS 164130 - 164903 920 ## COG0207 Thymidylate synthase + Term 164922 - 164959 5.6 + Prom 164918 - 164977 2.1 160 95 Op 1 12/0.000 + CDS 165087 - 165557 253 ## COG2165 Type II secretory pathway, pseudopilin PulG 161 95 Op 2 . + CDS 165548 - 166111 648 ## COG4795 Type II secretory pathway, component PulJ 162 95 Op 3 . + CDS 166108 - 166515 254 ## B21_02633 hypothetical protein 163 95 Op 4 5/0.243 + CDS 166557 - 166823 83 ## COG4967 Tfp pilus assembly protein PilV 164 95 Op 5 5/0.243 + CDS 166836 - 170204 3235 ## COG1330 Exonuclease V gamma subunit + Prom 170260 - 170319 4.1 165 96 Op 1 5/0.243 + CDS 170380 - 173268 2697 ## COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like 166 96 Op 2 13/0.000 + CDS 173261 - 176803 2893 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 167 96 Op 3 . + CDS 176803 - 178629 1313 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 178640 - 178690 9.5 168 97 Tu 1 . - CDS 178691 - 180022 1288 ## COG0548 Acetylglutamate kinase - Prom 180052 - 180111 5.6 + Prom 180045 - 180104 8.0 169 98 Tu 1 . + CDS 180254 - 181507 1214 ## COG0860 N-acetylmuramoyl-L-alanine amidase - TRNA 181581 - 181656 78.8 # Met CAT 0 0 Predicted protein(s) >gi|223713536|gb|ACDM01000062.1| GENE 1 2 - 464 288 154 aa, chain - ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 154 1 154 537 230 96.0 8e-61 MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEEEREIEH LRAQIEKLRRMLFGTRSEKLQREVEQAESQLKQREQDSDRYSGREDDPQVPRQLRQSRHR RPLPAHLPREIHRLEPEESCCQECGSELDYLGEV >gi|223713536|gb|ACDM01000062.1| GENE 2 495 - 845 245 116 aa, chain - ## HITS:1 COG:ECs1338 KEGG:ns NR:ns ## COG: ECs1338 COG3436 # Protein_GI_number: 15830592 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 116 1 116 116 221 93.0 3e-58 MISRPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLDENPFSGHLFIFRGRRCDTVKILWAD SDGLCQFTKHLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDWRQPKTSRLNSLTML >gi|223713536|gb|ACDM01000062.1| GENE 3 929 - 1294 209 121 aa, chain - ## HITS:1 COG:STM2813 KEGG:ns NR:ns ## COG: STM2813 COG1846 # Protein_GI_number: 16766124 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 116 47 162 176 90 41.0 6e-19 MLGGYGINYSTYMVLTVLSTADNHCLSPSEISRELQFTRTNITRITDFLEKAGYTERTDS KEDRRAKKISLTSEGLSFIQGITLTQNQYLKEIWSPLTYDERELFKDINQKLLTHFADVR S >gi|223713536|gb|ACDM01000062.1| GENE 4 2230 - 2547 221 105 aa, chain + ## HITS:1 COG:YPCD1.83c KEGG:ns NR:ns ## COG: YPCD1.83c COG2963 # Protein_GI_number: 16082769 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 105 3 107 107 102 64.0 1e-22 MSKTRRTKRTFSPEFRLEAIEQVVKYQRDVREVALALELNPDHLRKWIRLYKLELQGIEP AGNAIPLNSEKFSSLKAQIKRLEMEKEILKQAAVLMSEIPGKLSR >gi|223713536|gb|ACDM01000062.1| GENE 5 2952 - 3422 197 156 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 154 273 426 512 215 64.0 3e-56 MLTDIFNSNYQCYGYRRLHAMLRHEGDRLSEKVVRRLMVEEQLVVSRNRHRRYSSYCGEI GPSPDNLIARDFKAEQPNQKWLTDITEFQLPAGKVWLSPVVDCFDRKVVSWSLSTRPDAE LVNTMLDNAVETLNAGERPVIHSDRGGHYRWPGWKE >gi|223713536|gb|ACDM01000062.1| GENE 6 3531 - 3962 159 143 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 143 94 234 512 90 37.0 1e-18 MLARWVNERSPDRRRVFTSKTNPVASFEPEVKRQAVMVLCTRQGSASEIARRIGVSRAVL YKWKDEIIGNSAYQTMRKHNAPSLEAERDALREEVARLNQEIRRRQMELDILKKAEEIIK KDPGISISHLNNREKTKITDALR >gi|223713536|gb|ACDM01000062.1| GENE 7 4485 - 5747 365 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 49 399 60 400 406 145 28 2e-33 MALTDAKIRAAKHTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV IKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS ELRYSRWSEIDIDNAMWTIPAEREPLPGVKYSHRGSKMRIPHLVPLSKQAVAILTELQTW AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLGANREQCISSFEYAKINNPLK >gi|223713536|gb|ACDM01000062.1| GENE 8 5811 - 6032 87 73 aa, chain - ## HITS:1 COG:no KEGG:EC55989_4689 NR:ns ## KEGG: EC55989_4689 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 73 10 82 82 132 97.0 4e-30 MRPVARIAQSVEQGIENPRVLGSIPSPGTKFISTDLHGGPFFVSERHNLSVLPPNQFYRT QPDSPHINPIVWV >gi|223713536|gb|ACDM01000062.1| GENE 9 6126 - 6833 575 235 aa, chain - ## HITS:1 COG:ECs3842 KEGG:ns NR:ns ## COG: ECs3842 COG1811 # Protein_GI_number: 15833096 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Escherichia coli O157:H7 # 1 235 1 235 235 326 96.0 3e-89 MVIGPFINASAVLLGGVFGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMV LATLLGALIGEICLLEKGVNTVVVKAHNLFHHSRKKPAHESFIQNFVAIIVLFCASGTGI FGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILP LTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA >gi|223713536|gb|ACDM01000062.1| GENE 10 7232 - 9367 1876 711 aa, chain + ## HITS:1 COG:ECs3841 KEGG:ns NR:ns ## COG: ECs3841 COG1982 # Protein_GI_number: 15833095 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli O157:H7 # 1 711 21 731 731 1489 99.0 0 MKSMNIAASSELVSRLSTHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPV FLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFAC PGHQHGAFFKKHPAGRHFYDFFGENIFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFH ADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLQASRNP FGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLAIIQLGTYDGTVYNARQVIDTVG HLCDYILFDSAWVGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHK KDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELG IESRKAILTRCKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGANWHGFEGYAADQ YFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAES HEKLAQLVAMLAQFEQHIEDDSPLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDV KDLQKAMFRQQSFPSVVMNPQDAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVV PGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK >gi|223713536|gb|ACDM01000062.1| GENE 11 9416 - 10672 1584 418 aa, chain - ## HITS:1 COG:ECs3840 KEGG:ns NR:ns ## COG: ECs3840 COG0477 # Protein_GI_number: 15833094 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 418 17 434 434 724 99.0 0 MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPALLGI VADKWLSAKWVYAICHTIGAITLFMAAEVTTPEAMFLVILINSFAYMPTLGLINTISYYR LQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLP HIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDK DPMFASSFIVQHASIIMSISQISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAY GDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCIL GGIVSGKVVEMYTQNGITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH >gi|223713536|gb|ACDM01000062.1| GENE 12 10874 - 11956 946 360 aa, chain - ## HITS:1 COG:mltC KEGG:ns NR:ns ## COG: mltC COG0741 # Protein_GI_number: 16130864 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1 360 1 360 360 690 100.0 0 MMKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVI AGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLY SDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTIN MVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQH TAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAY NGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR >gi|223713536|gb|ACDM01000062.1| GENE 13 12018 - 12293 341 91 aa, chain - ## HITS:1 COG:STM3111 KEGG:ns NR:ns ## COG: STM3111 COG2924 # Protein_GI_number: 16766412 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: Fe-S cluster protector protein # Organism: Salmonella typhimurium LT2 # 1 91 1 91 91 159 93.0 1e-39 MSRMIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQHKQTMLINEKKLNMMNA EHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK >gi|223713536|gb|ACDM01000062.1| GENE 14 12321 - 13373 1080 350 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 6 343 11 366 378 420 58 1e-116 MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP TVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRS TAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERF NQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSLYPGKKPKQTLPERTGYFLLLQH EDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQRQIAADNLTQLTAFRHTFSHFHLD IVPMWLPVSSFIGCMDEDNALWYNLAQPPSVGLAAPVERLLQQLRTGAPV >gi|223713536|gb|ACDM01000062.1| GENE 15 13534 - 14253 735 239 aa, chain + ## HITS:1 COG:yggH KEGG:ns NR:ns ## COG: yggH COG0220 # Protein_GI_number: 16130861 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Escherichia coli K12 # 1 239 1 239 239 489 99.0 1e-138 MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLSSAHEEGLSNLRVMCH DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGIFHMATD WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK >gi|223713536|gb|ACDM01000062.1| GENE 16 14253 - 14579 451 108 aa, chain + ## HITS:1 COG:yggL KEGG:ns NR:ns ## COG: yggL COG3171 # Protein_GI_number: 16130860 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 108 11 118 118 200 99.0 7e-52 MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGS GYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLEEVRTSELFDVWWD >gi|223713536|gb|ACDM01000062.1| GENE 17 14766 - 15482 945 238 aa, chain + ## HITS:1 COG:no KEGG:ECO111_3709 NR:ns ## KEGG: ECO111_3709 # Name: yggN # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 238 2 239 239 429 100.0 1e-119 MRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGENGNLVITPDGNVMYNGK QYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIALDKIIVQEMGESSKMRSRLT KLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLVNQAMGGILQDSINEMGAKAVL KSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGKDVCSRVVTLEDSRKALVGNLK >gi|223713536|gb|ACDM01000062.1| GENE 18 15658 - 16704 1279 348 aa, chain + ## HITS:1 COG:ECs3833 KEGG:ns NR:ns ## COG: ECs3833 COG0252 # Protein_GI_number: 15833087 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 1 348 1 348 348 610 98.0 1e-174 MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNA VPQLKDIANVKGEQVVNIGSQDMNDDVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYF LDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGR GVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPVRKHTSDTPFDVSKLNELPKVGIVY NYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGTAVVRSSRVPTGAT TQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY >gi|223713536|gb|ACDM01000062.1| GENE 19 16821 - 17828 849 335 aa, chain + ## HITS:1 COG:no KEGG:ECED1_3419 NR:ns ## KEGG: ECED1_3419 # Name: yggM # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 335 1 335 335 603 99.0 1e-171 MKKQWIVGTALFMLMTGNVRADGEPPTENILKDQFKKQYHGILKLDVITLKNLDAKGNQA TWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAMLTSKGTPASGWSVNFYSF QAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALNNQNNSIPALKKDVKALDKQM VAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDDFNKQNDSEAFAVKYDKEVYQPAIAA CHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWITLEKGQYPLTMKVSEI NSKKVTILMKIDDINQANERWKKDTEQLRRNGVIK >gi|223713536|gb|ACDM01000062.1| GENE 20 17893 - 19029 1044 378 aa, chain - ## HITS:1 COG:yggW KEGG:ns NR:ns ## COG: yggW COG0635 # Protein_GI_number: 16130856 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli K12 # 1 378 1 378 378 783 98.0 0 MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVK TIFIGGGTPSLLSGPAMQTLLNGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNR ISIGVQSFSEEKLKRLGRIHGPQEAKRAANLASGLGLRSFNLDLMHGLPDQSLEEALGDL RQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA YAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRYLESQR DVEAADKPFEFFMNRFRLLEAAPRVEFSQYTGLSEEVIRPQLDEAIAQGYLTECADYWQI TEHGKLFLNSLLELFLAE >gi|223713536|gb|ACDM01000062.1| GENE 21 19022 - 19615 1007 197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|26249375|ref|NP_755415.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia coli CFT073] # 1 197 1 197 197 392 100 1e-108 MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKV TGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHC VLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAI SHRGQALKLLLDALRNG >gi|223713536|gb|ACDM01000062.1| GENE 22 19623 - 19913 286 96 aa, chain - ## HITS:1 COG:ECs3829 KEGG:ns NR:ns ## COG: ECs3829 COG1872 # Protein_GI_number: 15833083 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 96 5 100 100 172 97.0 2e-43 MSAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKLFR VAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN >gi|223713536|gb|ACDM01000062.1| GENE 23 19910 - 20476 814 188 aa, chain - ## HITS:1 COG:ECs3828 KEGG:ns NR:ns ## COG: ECs3828 COG0762 # Protein_GI_number: 15833082 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 272 100.0 2e-73 MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGP IDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVS QGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVAEVLQATGNML LPGLWMAL >gi|223713536|gb|ACDM01000062.1| GENE 24 20494 - 21198 658 234 aa, chain - ## HITS:1 COG:ECs3826 KEGG:ns NR:ns ## COG: ECs3826 COG0325 # Protein_GI_number: 15833081 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 456 100.0 1e-128 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK >gi|223713536|gb|ACDM01000062.1| GENE 25 21216 - 22196 829 326 aa, chain + ## HITS:1 COG:yggR KEGG:ns NR:ns ## COG: yggR COG2805 # Protein_GI_number: 16130851 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, pilus retraction ATPase PilT # Organism: Escherichia coli K12 # 1 326 16 341 341 611 98.0 1e-175 MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAIL LENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSEN GLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYTSQRCLIQQREIGLHCM TFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPH VIQTGQQVGMITFQQSYQQRVKEGRL >gi|223713536|gb|ACDM01000062.1| GENE 26 22370 - 22786 515 138 aa, chain - ## HITS:1 COG:yqgF KEGG:ns NR:ns ## COG: yqgF COG0816 # Protein_GI_number: 16130850 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Escherichia coli K12 # 1 138 1 138 138 276 100.0 7e-75 MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVG LPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK VDSASAVIILESYFEQGY >gi|223713536|gb|ACDM01000062.1| GENE 27 22786 - 23349 643 187 aa, chain - ## HITS:1 COG:ECs3824 KEGG:ns NR:ns ## COG: ECs3824 COG1678 # Protein_GI_number: 15833078 # Func_class: K Transcription # Function: Putative transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 187 25 211 211 374 100.0 1e-104 MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPE PRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQ PSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTM PGVAGHA >gi|223713536|gb|ACDM01000062.1| GENE 28 23458 - 24408 356 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme [Shewanella piezotolerans WP3] # 7 310 6 319 345 141 33 2e-32 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMADLYLINGEARARTRTLSVE QNYDKWYEFTGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEDKGTLIVNKPQSLR DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS ITGMLMDAIEARLQQQ >gi|223713536|gb|ACDM01000062.1| GENE 29 24421 - 25152 628 243 aa, chain - ## HITS:1 COG:ECs3822 KEGG:ns NR:ns ## COG: ECs3822 COG1385 # Protein_GI_number: 15833076 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 243 10 252 252 486 100.0 1e-137 MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKK SVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN TLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFG DLG >gi|223713536|gb|ACDM01000062.1| GENE 30 25232 - 25939 453 235 aa, chain - ## HITS:1 COG:ECs3821 KEGG:ns NR:ns ## COG: ECs3821 COG2356 # Protein_GI_number: 15833075 # Func_class: L Replication, recombination and repair # Function: Endonuclease I # Organism: Escherichia coli O157:H7 # 1 235 1 235 235 446 99.0 1e-125 MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPGTFYCGCKINWQGKKGV VDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYRKMESDMH NLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEKVAEPPARARGAIARTYFYMR DQYNLTLSRQQTQLFNAWDKMYPVTDWECERDERIAKVQGNHNPYVQRACQARKS >gi|223713536|gb|ACDM01000062.1| GENE 31 26034 - 26585 489 183 aa, chain - ## HITS:1 COG:sprT KEGG:ns NR:ns ## COG: sprT COG3091 # Protein_GI_number: 16130845 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 19 183 1 165 165 317 99.0 6e-87 MEEATSCSHLFFALSSAAMKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQ RGTSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM MESVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGEQL VAK >gi|223713536|gb|ACDM01000062.1| GENE 32 26608 - 28002 1748 464 aa, chain - ## HITS:1 COG:galP KEGG:ns NR:ns ## COG: galP COG0477 # Protein_GI_number: 16130844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 464 1 464 464 852 100.0 0 MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSS MMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVG VASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIP AILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWA LFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTN VLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIV GFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWV YAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD >gi|223713536|gb|ACDM01000062.1| GENE 33 28438 - 29592 1343 384 aa, chain - ## HITS:1 COG:ECs3818 KEGG:ns NR:ns ## COG: ECs3818 COG0192 # Protein_GI_number: 15833072 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Escherichia coli O157:H7 # 1 384 1 384 384 781 100.0 0 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH FGREHFPWEKTDKAQLLRDAAGLK >gi|223713536|gb|ACDM01000062.1| GENE 34 30010 - 30153 59 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|188495354|ref|ZP_03002624.1| ## NR: gi|188495354|ref|ZP_03002624.1| hypothetical protein Ec53638_2979 [Escherichia coli 53638] # 1 47 1 47 47 79 100.0 6e-14 MNRCLLLNLSHRSGEDSFPALCISALHTCRCYTHLGASQDSRAGYSY >gi|223713536|gb|ACDM01000062.1| GENE 35 30387 - 32363 2309 658 aa, chain + ## HITS:1 COG:ECs3814 KEGG:ns NR:ns ## COG: ECs3814 COG1166 # Protein_GI_number: 15833068 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Escherichia coli O157:H7 # 1 658 1 658 658 1363 100.0 0 MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVC PDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI RLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEK SKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKL GVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITE SGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREW LHDSQMDLHDIHIGYSSGTFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQER MADKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDG DGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELS DEGDTVADMLQYVQLDPKTLLTQFRDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE >gi|223713536|gb|ACDM01000062.1| GENE 36 32509 - 33240 526 243 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_3357 NR:ns ## KEGG: ECIAI39_3357 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 243 1 243 243 464 100.0 1e-130 MKKWKVRSALIALVVLLAGCSSNAQYNSSTSGNVGTAWGGDVHSSVQGVSAERAWRDPAE MIVISYSTTVPSGYDRVYSIRINELEYAIRDGNFNSLPITRVYDSSNNEPRYIVHARIGM NYQLYIRNYSRNTNYEIVATVDGLDVLNGKQGSLNNNGYIVNAGDSLAIKGFRKDKHTEA AFQFANVADSYAANSAQGDVRNTGVIGFAAFELQGTAQNALPPCSGQAFPADNNGYAPPP CRK >gi|223713536|gb|ACDM01000062.1| GENE 37 33376 - 34296 1290 306 aa, chain + ## HITS:1 COG:ECs3812 KEGG:ns NR:ns ## COG: ECs3812 COG0010 # Protein_GI_number: 15833066 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 613 99.0 1e-175 MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDMATSGRAGGRHGPAAIR QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRML SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPKEGLIDPNH SVQIGIRTEFDKDNGFTVLDACQVNDRGVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAP GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ AAKKGE >gi|223713536|gb|ACDM01000062.1| GENE 38 34344 - 35102 792 252 aa, chain - ## HITS:1 COG:ECs3811 KEGG:ns NR:ns ## COG: ECs3811 COG0501 # Protein_GI_number: 15833065 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli O157:H7 # 1 252 43 294 294 461 98.0 1e-130 MKIRALLVAMSVATVLSGCQNMDANGLLSSGAEAFQAYSLSDAQVKTLSDQACQEMDSKA TIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMT DNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGDLGEKLV NSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPASAERAQ HIRDRMSADGVK >gi|223713536|gb|ACDM01000062.1| GENE 39 35380 - 37371 2447 663 aa, chain + ## HITS:1 COG:ECs3810 KEGG:ns NR:ns ## COG: ECs3810 COG0021 # Protein_GI_number: 15833064 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Escherichia coli O157:H7 # 1 663 1 663 663 1331 99.0 0 MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRF VLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGI ANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIA FYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSL LMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAG QAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKA SQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANG ISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGG YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESV LPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAK ELL >gi|223713536|gb|ACDM01000062.1| GENE 40 37417 - 38325 1013 302 aa, chain - ## HITS:1 COG:YPO1342 KEGG:ns NR:ns ## COG: YPO1342 COG0330 # Protein_GI_number: 16121622 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Yersinia pestis # 18 302 18 303 308 288 52.0 6e-78 MKAPVSLTSFRPQKSLAIAIGVLAVVVLPFLSYYTVNEGERGILLRYGKIVKVAEPGLGF KIPFMESVEKISTRNQAVVYQGLQAYSRDQQPAQMTVSVSFHIKPSEAGAVYTTYNTIEA LKDRLIVRQLPTQLENVFGQYTAISAVQDRTKLVQDLQNAMRKAVVGPVVIDGVQIENID FSDAYEKSIEDRMKAEVAIATRKQNLETEKIQAQIAVTQAQAEADSKLAAAKAEAETIRV RGAAEAETIRLKSAAEAEAIRLRGEALRDNPGLVALTTAERWDGKLPDTMIPGSTVPFIS TK >gi|223713536|gb|ACDM01000062.1| GENE 41 38702 - 39145 325 147 aa, chain + ## HITS:1 COG:ECs3809 KEGG:ns NR:ns ## COG: ECs3809 COG1762 # Protein_GI_number: 15833063 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1 147 1 147 147 246 97.0 1e-65 MRLSDYFPESSISVIHSAKDWQEAIDFSMASLLDKNYISENYIQAIKDSTINNGPYYILA PGVAMPHARPECGALKTGMSLTLLKQGVYFPGNDEPIKLLIGLSAADADSHIGAIQALSE LLCEEEILEQLLTASSEKQLADIISCG >gi|223713536|gb|ACDM01000062.1| GENE 42 39173 - 40561 1708 462 aa, chain + ## HITS:1 COG:ECs3808 KEGG:ns NR:ns ## COG: ECs3808 COG2213 # Protein_GI_number: 15833062 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Escherichia coli O157:H7 # 1 462 1 462 462 853 99.0 0 MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYL LPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALE KRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSV INEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMS KRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGS IFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMK QEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVV THASLEGRVKRVTDKSLILINNYIGDPKLDTLFNQLTAEHKH >gi|223713536|gb|ACDM01000062.1| GENE 43 40576 - 41853 1275 425 aa, chain + ## HITS:1 COG:ECs3807 KEGG:ns NR:ns ## COG: ECs3807 COG1063 # Protein_GI_number: 15833061 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1 425 1 425 425 858 98.0 0 MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVPDDLE NHPVITGHECAGVIVEVGKNLTDKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGGNATYMI IPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGVKPGGNIAL LACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVELAASKGIELVYVNTK GMSDPVQKLRALTGDVGFDDIFVYAAVPAVVEMADELLAEDGCLNFFAGPTDKNFKVPFN FYNVHYNSTHVVGTSGGSTDDMKEAITLSATGQLQPSFMVTHIGGLDAVPETVLNLPDIP GGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIWNEQAEKYLLAQFGVDI GEAAQ >gi|223713536|gb|ACDM01000062.1| GENE 44 41850 - 42815 846 321 aa, chain + ## HITS:1 COG:yggF KEGG:ns NR:ns ## COG: yggF COG1494 # Protein_GI_number: 16130831 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Escherichia coli K12 # 1 321 1 321 321 622 98.0 1e-178 MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALNDVAFRGRVVIGEGEID HAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAVMAFAPRGSLLHAPDMYMK KLVVNRLAAGAIDLSLPLADNLRNVARALGKPLDKLRMVTLDKPRLSAAIEEATQLGVKV FALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISACAVKALGGDMQAELIDFCQAKGD YTENRQIAEQERKRCKAMGVDVNRVYSVDELVRGNDILFSATGVTGGELVNGIQQTANGV RTQTLLIGGADQTCNIIDSLH >gi|223713536|gb|ACDM01000062.1| GENE 45 42837 - 43346 343 169 aa, chain + ## HITS:1 COG:yggD KEGG:ns NR:ns ## COG: yggD COG3722 # Protein_GI_number: 16130830 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 169 1 169 169 292 97.0 2e-79 MATLTEDDVLEQLEAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN SITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP >gi|223713536|gb|ACDM01000062.1| GENE 46 43343 - 44056 383 237 aa, chain + ## HITS:1 COG:yggC KEGG:ns NR:ns ## COG: yggC COG1072 # Protein_GI_number: 16130829 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Escherichia coli K12 # 1 237 1 237 237 489 100.0 1e-138 MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLT TFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVE GDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQI LRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS >gi|223713536|gb|ACDM01000062.1| GENE 47 44341 - 45360 816 339 aa, chain + ## HITS:1 COG:ECs3798 KEGG:ns NR:ns ## COG: ECs3798 COG0057 # Protein_GI_number: 15833052 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 339 1 339 339 679 100.0 0 MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWE VRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTT IHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTI NVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGT QTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATVAFR >gi|223713536|gb|ACDM01000062.1| GENE 48 45410 - 46573 1443 387 aa, chain + ## HITS:1 COG:pgk KEGG:ns NR:ns ## COG: pgk COG0126 # Protein_GI_number: 16130827 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Escherichia coli K12 # 1 387 1 387 387 717 100.0 0 MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHL GRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVAEGELVVLENVRFNKGEKK DDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKE PARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVD EAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKN AKTILWNGPVGVFEFPNFRKGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADKISYIS TGGGAFLEFVEGKVLPAVAMLEERAKK >gi|223713536|gb|ACDM01000062.1| GENE 49 46788 - 47867 1174 359 aa, chain + ## HITS:1 COG:Zfba KEGG:ns NR:ns ## COG: Zfba COG0191 # Protein_GI_number: 15803459 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 EDL933 # 1 359 26 384 384 742 100.0 0 MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ FSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWI DGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTG GEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPT ILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGV LNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL >gi|223713536|gb|ACDM01000062.1| GENE 50 48225 - 49085 1039 286 aa, chain + ## HITS:1 COG:ECs3795 KEGG:ns NR:ns ## COG: ECs3795 COG0668 # Protein_GI_number: 15833049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 498 100.0 1e-141 MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAA GVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSR EPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVW SNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKEDKAA >gi|223713536|gb|ACDM01000062.1| GENE 51 49224 - 49859 609 211 aa, chain + ## HITS:1 COG:ECs3794 KEGG:ns NR:ns ## COG: ECs3794 COG1279 # Protein_GI_number: 15833048 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Escherichia coli O157:H7 # 1 211 1 211 211 365 99.0 1e-101 MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSA LLMQSPWLLALVTWGGVAFLLWYGFGAFKTAMSSNIELASAEVMKQGRWKIIATMLAVTW LNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRTAKSQ RIINLVVGCVMWFIALQLARDGIAHAQALFS >gi|223713536|gb|ACDM01000062.1| GENE 52 49952 - 50692 781 246 aa, chain + ## HITS:1 COG:ECs3793 KEGG:ns NR:ns ## COG: ECs3793 COG2968 # Protein_GI_number: 15833047 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 410 100.0 1e-114 MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDIATLAIEVNVAAKDAAT AKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDGKSILKGYRAVRTVEVTLR QLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKAAIDNAIHQAQELANGFHRKL GPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQAAIQFDDQVDVVFQLEPVDQQPA KTPAAQ >gi|223713536|gb|ACDM01000062.1| GENE 53 50859 - 51755 766 298 aa, chain + ## HITS:1 COG:ygfI KEGG:ns NR:ns ## COG: ygfI COG0583 # Protein_GI_number: 16130822 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 298 6 303 303 596 100.0 1e-170 MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISL NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG VTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFLVSRRYE ERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAEDRDGTSH >gi|223713536|gb|ACDM01000062.1| GENE 54 51752 - 53230 1086 492 aa, chain - ## HITS:1 COG:ygfH KEGG:ns NR:ns ## COG: ygfH COG0427 # Protein_GI_number: 16130821 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Escherichia coli K12 # 1 492 1 492 492 991 100.0 0 METQWTRMTANEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARRANEQHEAKKPYQIRLL TGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSFVDLHLSEVAQMVNYGFFG DIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIELNHYHDPRVAELADIVIPGA PPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPDAGNMLDKQNPMCQQIADNVVTF LLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENPVIPPFMMYSEVLQESVVHLLETGK ISGASASSLTISADSLRKIYDNMDYFASRIVLRPQEISNNPEIIRRLGVIALNVGLEFDI YGHANSTHVAGVDLMNGIGGSGDFERNAYLSIFMAPSIAKEGKISTVVPMCSHVDHSEHS VKVIITEQGIADLRGLSPLQRARTIIDNCAHPMYRDYLHRYLENAPGGHIHHDLSHVFDL HRNLIATGSMLG >gi|223713536|gb|ACDM01000062.1| GENE 55 53254 - 54039 917 261 aa, chain - ## HITS:1 COG:ECs3789 KEGG:ns NR:ns ## COG: ECs3789 COG1024 # Protein_GI_number: 15833043 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli O157:H7 # 1 261 15 275 275 525 100.0 1e-149 MSYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSK VFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDL IIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNH VVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS EDYQEGMNAFLEKRKPNFVGH >gi|223713536|gb|ACDM01000062.1| GENE 56 54050 - 55045 861 331 aa, chain - ## HITS:1 COG:argK KEGG:ns NR:ns ## COG: argK COG1703 # Protein_GI_number: 16130819 # Func_class: E Amino acid transport and metabolism # Function: Putative periplasmic protein kinase ArgK and related GTPases of G3E family # Organism: Escherichia coli K12 # 1 331 1 331 331 658 100.0 0 MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVT GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGG DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA LEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYY RQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD >gi|223713536|gb|ACDM01000062.1| GENE 57 55038 - 57182 2299 714 aa, chain - ## HITS:1 COG:sbm_1 KEGG:ns NR:ns ## COG: sbm_1 COG1884 # Protein_GI_number: 16130818 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, N-terminal domain/subunit # Organism: Escherichia coli K12 # 1 585 1 585 585 1138 100.0 0 MSNVQEWQQLANKELSRREKTVDSLVHQTAEGIAIKPLYTEADLDNLEVTGTLPGLPPYV RGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDNPR VAGDVGKAGVAIDTVEDMKVLFDQIPLDKMSVSMTMNGAVLPVLAFYIVAAEEQGVTPDK LTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCSGNMPRFNTISISGYHMGEAGAN CVQQVAFTLADGIEYIKAAISAGLKIDDFAPRLSFFFGIGMDLFMNVAMLRAARYLWSEA VSGFGAQDPKSLALRTHCQTSGWSLTEQDPYNNVIRTTIEALAATLGGTQSLHTNAFDEA LGLPTDFSARIARNTQIIIQEESELCRTVDPLAGSYYIESLTDQIVKQARAIIQQIDEAG GMAKAIEAGLPKRMIEEASAREQSLIDQGKRVIVGVNKYKLDHEDETDVLEIDNVMVRNE QIASLERIRATRDDAAVTAALNALTHAAQHNENLLAAAVNAARVRATLGEISDALEVAFD RYLVPSQCVTGVIAQSYHQSEKSASEFDAIVAQTEQFLADNGRRPRILIAKMGQDGHDRG AKVIASAYSDLGFDVDLSPMFSTPEEIARLAVENDVHVVGASSLAAGHKTLIPELVEALK KWGREDICVVAGGVIPPQDYAFLQERGVAAIYGPGTPMLDSVRDVLNLISQHHD >gi|223713536|gb|ACDM01000062.1| GENE 58 57386 - 58279 889 297 aa, chain - ## HITS:1 COG:ECs3786 KEGG:ns NR:ns ## COG: ECs3786 COG0583 # Protein_GI_number: 15833040 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 297 1 297 297 577 100.0 1e-165 MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPT EQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIR LNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNG VTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMI PHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD >gi|223713536|gb|ACDM01000062.1| GENE 59 58421 - 58651 168 76 aa, chain + ## HITS:1 COG:yqfE KEGG:ns NR:ns ## COG: yqfE COG0583 # Protein_GI_number: 16130816 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 76 1 76 76 142 100.0 1e-34 MHFAQRVRALVVLNGVALLPQFACKQGLANGELVRLFAPWSGIPRPLYALFAGRKGMPAI ARYFMDELTTRLANGV >gi|223713536|gb|ACDM01000062.1| GENE 60 58707 - 59366 822 219 aa, chain + ## HITS:1 COG:ECs3785 KEGG:ns NR:ns ## COG: ECs3785 COG0120 # Protein_GI_number: 15833039 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 397 100.0 1e-111 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKL KSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADAS KQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGMEILDPI AMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK >gi|223713536|gb|ACDM01000062.1| GENE 61 59622 - 60854 1483 410 aa, chain + ## HITS:1 COG:ECs3784 KEGG:ns NR:ns ## COG: ECs3784 COG0111 # Protein_GI_number: 15833038 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli O157:H7 # 1 410 1 410 410 802 100.0 0 MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLR SRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEL LLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY DIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR GTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEA QENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAE QGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY >gi|223713536|gb|ACDM01000062.1| GENE 62 61243 - 61845 408 200 aa, chain - ## HITS:1 COG:ECs3782 KEGG:ns NR:ns ## COG: ECs3782 COG0212 # Protein_GI_number: 15833036 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Escherichia coli O157:H7 # 19 200 1 182 182 356 100.0 1e-98 MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLS FDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR DVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEKLP VEEWDIPLPAVVTPSKVWEW >gi|223713536|gb|ACDM01000062.1| GENE 63 61878 - 62141 105 87 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_3030 NR:ns ## KEGG: ECIAI1_3030 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 87 22 108 108 178 100.0 5e-44 MPPQAVTLEPLVQGECVVAVLRLLGRTEHAHQPRSATFLWYEISAQGTGPLANISEKFCL HGYSTTVNRKVSFKVLVSFFGDATLFK >gi|223713536|gb|ACDM01000062.1| GENE 64 62091 - 62420 340 109 aa, chain - ## HITS:1 COG:ECs3781 KEGG:ns NR:ns ## COG: ECs3781 COG3027 # Protein_GI_number: 15833035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 109 1 109 109 163 100.0 6e-41 MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERTRVTNTEQLVFIAALN ISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITEKTNQNFE >gi|223713536|gb|ACDM01000062.1| GENE 65 62588 - 63166 663 192 aa, chain + ## HITS:1 COG:ECs3780 KEGG:ns NR:ns ## COG: ECs3780 COG3079 # Protein_GI_number: 15833034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 192 3 194 194 359 100.0 1e-99 MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGMAF GHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQ PKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTHPQ PTAPEVQKPTLH >gi|223713536|gb|ACDM01000062.1| GENE 66 63192 - 64517 1359 441 aa, chain + ## HITS:1 COG:pepP KEGG:ns NR:ns ## COG: pepP COG0006 # Protein_GI_number: 16130810 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1 441 1 441 441 902 100.0 0 MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPE AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPE EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENG CILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLET SLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLD VHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENL TASVVKKPEEIEALMVAARKQ >gi|223713536|gb|ACDM01000062.1| GENE 67 64514 - 65692 999 392 aa, chain + ## HITS:1 COG:ubiH KEGG:ns NR:ns ## COG: ubiH COG0654 # Protein_GI_number: 16130809 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 392 1 392 392 753 100.0 0 MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPGFDGRAIALAAGTCQQL ARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAALGQVVELHNVGQRLFALLR KAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVAADGTHSALATACGVDWQQEP YEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDGRCSLVWCHPLERREEVLSWSDE KFCRELQSAFGWRLGKITHAGKRSAYPLALTHAARSITHRTVLVGNAAQTLHPIAGQGFN LGMRDVMSLAETLTQAQERGEDMGDYGVLCRYQQRRQSDREATIGVTDSLVHLFANRWAP LVVGRNIGLMTMELFTPARDVLAQRTLGWVAR >gi|223713536|gb|ACDM01000062.1| GENE 68 65715 - 66917 1350 400 aa, chain + ## HITS:1 COG:visC KEGG:ns NR:ns ## COG: visC COG0654 # Protein_GI_number: 16130808 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 400 1 400 400 809 100.0 0 MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVQEPLAANAPPQLRVSAINAASEKL LTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNK AHQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTF WDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQ GVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGT NPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR >gi|223713536|gb|ACDM01000062.1| GENE 69 67365 - 68459 1360 364 aa, chain + ## HITS:1 COG:gcvT KEGG:ns NR:ns ## COG: gcvT COG0404 # Protein_GI_number: 16130807 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Escherichia coli K12 # 1 364 1 364 364 746 100.0 0 MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGS RTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREK DLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAG DLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEM DETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVRF TDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREMPVKVTKPVFVRNG KAVA >gi|223713536|gb|ACDM01000062.1| GENE 70 68483 - 68872 554 129 aa, chain + ## HITS:1 COG:ECs3775 KEGG:ns NR:ns ## COG: ECs3775 COG0509 # Protein_GI_number: 15833029 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Escherichia coli O157:H7 # 1 129 1 129 129 217 100.0 4e-57 MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV AESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDAT AYEALLEDE >gi|223713536|gb|ACDM01000062.1| GENE 71 68991 - 71864 3454 957 aa, chain + ## HITS:1 COG:ECs3774_2 KEGG:ns NR:ns ## COG: ECs3774_2 COG1003 # Protein_GI_number: 15833028 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Escherichia coli O157:H7 # 451 957 1 507 507 1030 100.0 0 MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGA PATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVS QGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASDVH PQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQQVGTTGEIHDYTALISELKSRK IVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGR IIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVYHGPVGLKRI ANRIHRLTDILAAGLQQKGLKLRHAHYFDTLCVEVADKAGVLTRAEAAEINLRSDILNAV GITLDETTTRENVMQLFNVLLGDNHGLDIDTLDKDVAHDSRSIQPAMLRDDEILTHPVFN RYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPE QAEGYQQMIAQLADWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLI PASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVY EETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPG MGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKK ASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDY GFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNA PHIQSELVAEWAHPYSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ >gi|223713536|gb|ACDM01000062.1| GENE 72 72131 - 72874 253 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 247 7 240 242 102 31 2e-20 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADI SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIR VNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF IDLAGGK >gi|223713536|gb|ACDM01000062.1| GENE 73 72931 - 74364 1698 477 aa, chain - ## HITS:1 COG:bglA KEGG:ns NR:ns ## COG: bglA COG2723 # Protein_GI_number: 16130803 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1 477 3 479 479 1004 99.0 0 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVLPGKYYP NHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELL KYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN NQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCML AMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLD VLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYAL CELYEHYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGY TPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEKL >gi|223713536|gb|ACDM01000062.1| GENE 74 74409 - 74720 407 103 aa, chain + ## HITS:1 COG:ECs3772 KEGG:ns NR:ns ## COG: ECs3772 COG3097 # Protein_GI_number: 15833026 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 103 1 103 103 187 100.0 4e-48 MQPNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRFEDDGYFCTIEVTATST VTLDTLTEKHAEQENMTLTELKKVIADIYPGQTQFYVIEFKCL >gi|223713536|gb|ACDM01000062.1| GENE 75 74884 - 75543 698 219 aa, chain + ## HITS:1 COG:ECs3771 KEGG:ns NR:ns ## COG: ECs3771 COG1272 # Protein_GI_number: 15833025 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 355 99.0 5e-98 MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDLNASATAITSYSLYGGS MILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPFLLVGLDSPLARGLMIVIW SLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMAVKLAAGSVTLLAVGGVVYSL GVIFYVCKRIPYNHAIWHSFVLGGSVCHFLAIYLYIGQA >gi|223713536|gb|ACDM01000062.1| GENE 76 75739 - 76719 1062 326 aa, chain - ## HITS:1 COG:ygfZ KEGG:ns NR:ns ## COG: ygfZ COG0354 # Protein_GI_number: 16130800 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Escherichia coli K12 # 1 326 1 326 326 627 100.0 1e-179 MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLA AHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGV AGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGE AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF RGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDM EPDSIFRVRDDANTLHIEPLPYSLEE >gi|223713536|gb|ACDM01000062.1| GENE 77 76962 - 77228 310 88 aa, chain + ## HITS:1 COG:ECs3769 KEGG:ns NR:ns ## COG: ECs3769 COG2938 # Protein_GI_number: 15833023 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 88 1 88 88 171 100.0 4e-43 MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMN HGKPADAELEMMVRLIQTRNRERGPVAI >gi|223713536|gb|ACDM01000062.1| GENE 78 77209 - 77616 251 135 aa, chain + ## HITS:1 COG:no KEGG:SSON_3049 NR:ns ## KEGG: SSON_3049 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 135 1 135 135 212 100.0 3e-54 MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRI NARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAE WRDLRRILLQQETQR >gi|223713536|gb|ACDM01000062.1| GENE 79 77656 - 78177 786 173 aa, chain - ## HITS:1 COG:ECs3767 KEGG:ns NR:ns ## COG: ECs3767 COG0716 # Protein_GI_number: 15833021 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 173 1 173 173 342 100.0 2e-94 MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLMEQYDVLILGIPTWDFGE IQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALGMLHDKLSTKGVKFVGYWP TEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSWCEQILNEMAEHYA >gi|223713536|gb|ACDM01000062.1| GENE 80 78289 - 79185 833 298 aa, chain + ## HITS:1 COG:xerD KEGG:ns NR:ns ## COG: xerD COG4974 # Protein_GI_number: 16130796 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Escherichia coli K12 # 1 298 1 298 298 548 100.0 1e-156 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA >gi|223713536|gb|ACDM01000062.1| GENE 81 79210 - 79920 752 236 aa, chain + ## HITS:1 COG:ECs3765 KEGG:ns NR:ns ## COG: ECs3765 COG1651 # Protein_GI_number: 15833019 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Escherichia coli O157:H7 # 1 236 1 236 236 468 100.0 1e-132 MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYIT DDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGY CHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP ASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK >gi|223713536|gb|ACDM01000062.1| GENE 82 79926 - 81659 1951 577 aa, chain + ## HITS:1 COG:recJ KEGG:ns NR:ns ## COG: recJ COG0608 # Protein_GI_number: 16130794 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Escherichia coli K12 # 1 577 1 577 577 1157 100.0 0 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI >gi|223713536|gb|ACDM01000062.1| GENE 83 81967 - 82848 995 293 aa, chain + ## HITS:1 COG:ECs3763 KEGG:ns NR:ns ## COG: ECs3763 COG1186 # Protein_GI_number: 15833017 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli O157:H7 # 1 293 73 365 365 542 100.0 1e-154 MKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDI QAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWL RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMED NKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL >gi|223713536|gb|ACDM01000062.1| GENE 84 82858 - 84375 2035 505 aa, chain + ## HITS:1 COG:lysS KEGG:ns NR:ns ## COG: lysS COG1190 # Protein_GI_number: 16130792 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Escherichia coli K12 # 1 505 1 505 505 1004 100.0 0 MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEE LEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGD ILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDES RNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPVK >gi|223713536|gb|ACDM01000062.1| GENE 85 84419 - 84967 419 182 aa, chain - ## HITS:1 COG:idi KEGG:ns NR:ns ## COG: idi COG1443 # Protein_GI_number: 16130791 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Escherichia coli K12 # 1 182 1 182 182 377 100.0 1e-105 MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPG VWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPV FAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRLSAFTQ LK >gi|223713536|gb|ACDM01000062.1| GENE 86 85090 - 85215 81 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNFLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF >gi|223713536|gb|ACDM01000062.1| GENE 87 85217 - 86665 375 482 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 29 440 15 416 447 149 27 1e-34 MSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSK EAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLG IFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYG NPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFA IVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRVDGV GTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQF VLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVL QPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLKVRTVRMWLLMRKLKKNEH GE >gi|223713536|gb|ACDM01000062.1| GENE 88 87086 - 89020 1044 644 aa, chain + ## HITS:1 COG:ECs3759_2 KEGG:ns NR:ns ## COG: ECs3759_2 COG0493 # Protein_GI_number: 15833013 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli O157:H7 # 158 644 1 487 487 1001 99.0 0 MKGMQMNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAANLVA CHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDLC NQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNS RKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRL VQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTAL AMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPP FKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPH EDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA ASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGE PGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLP TQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTKAS >gi|223713536|gb|ACDM01000062.1| GENE 89 89020 - 89508 250 162 aa, chain + ## HITS:1 COG:ygfS KEGG:ns NR:ns ## COG: ygfS COG1142 # Protein_GI_number: 16130788 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1 162 2 163 163 267 100.0 5e-72 MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRLDSISAPVMCHQCEN APCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCDLC EQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENPL >gi|223713536|gb|ACDM01000062.1| GENE 90 89544 - 90911 1195 455 aa, chain - ## HITS:1 COG:ECs3757 KEGG:ns NR:ns ## COG: ECs3757 COG2252 # Protein_GI_number: 15833011 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli O157:H7 # 1 455 1 455 455 711 100.0 0 MSGDILQTPDAPKPQGALDNYFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAG FPPAAVFVATCLVAGFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISVPVALGAV FLMGVIFTAISVTGVRTWILRNLPMGIAHGTGIGIGLFLLLIAANGVGMVIKNPIEGLPV ALGAFTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIAISIIGLIFDPAVKYHGLVAMPS LTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQIIN GGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLLILFLSPLS FLIPGYATAPALMYVGLLMLSNVSKLDFNDFIDAMAGLVCAVFIVLTCNIVTGIMLGFVT LVVGRVFAREWQKLNIGTVIITAALVAFYAGGWAI >gi|223713536|gb|ACDM01000062.1| GENE 91 90947 - 92263 1422 438 aa, chain - ## HITS:1 COG:ygfP KEGG:ns NR:ns ## COG: ygfP COG0402 # Protein_GI_number: 16130785 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 438 2 439 439 919 100.0 0 MSGEHTLKAVRGSFIDVTRTIDNPEEIASALRFIEDGLLLIKQGKVEWFGEWENGKHQIP DTIRVRDYRGKLIVPGFVDTHIHYPQSEMVGAYGEQLLEWLNKHTFPTERRYEDLEYARE MSAFFIKQLLRNGTTTALVFGTVHPQSVDALFEAASHINMRMIAGKVMMDRNAPDYLLDT AESSYHQSKELIERWHKNGRLLYAITPRFAPTSSPEQMAMAQRLKEEYPDTWVHTHLCEN KDEIAWVKSLYPDHDGYLDVYHQYGLTGKNCVFAHCVHLEEKEWDRLSETKSSIAFCPTS NLYLGSGLFNLKKAWQKKVKVGMGTDIGAGTTFNMLQTLNEAYKVLQLQGYRLSAYEAFY LATLGGAKSLGLDDLIGNFLPGKEADFVVMEPTATPLQQLRYDNSVSLVDKLFVMMTLGD DRSIYRTYVDGRLVYERN >gi|223713536|gb|ACDM01000062.1| GENE 92 92281 - 93681 292 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 45 453 27 425 447 117 25 5e-25 MSDINHAGSDLIFELEDRPPFHQALVGAITHLLAIFVPMVTPALIVGAALQLSAETTAYL VSMAMIASGIGTWLQVNRYGIVGSGLLSIQSVNFSFVTVMIALGSSMKSDGFHEELIMSS LLGVSFVGAFLVVGSSFILPYLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSG TFGNYEHLGVGLLVLIVVIGFNCCRSPLLRMGGIAIGLCVGYIASLCLGMVDFSSMRNLP LITIPHPFKYGFSFSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGG VLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFF TTIPSAVLGGAMTLMFSMIAIAGIRIIITNGLKRRETLIVATSLGLGLGVSYDPEIFKIL PASIYVLVENPICAGGLTAILLNIILPGGYRQENVLPGITSAEEMD >gi|223713536|gb|ACDM01000062.1| GENE 93 93846 - 96716 2894 956 aa, chain - ## HITS:1 COG:ECs3754_2 KEGG:ns NR:ns ## COG: ECs3754_2 COG1529 # Protein_GI_number: 15833008 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli O157:H7 # 160 956 1 797 797 1642 99.0 0 MIIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNGNIVNASL LIAAQLEKADIRTAESLGKWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPT REEIDDALSGLFSRDAGWQQYYQVIELAVARKNNPQATIDIAPTFRDDLEVIGKHYPKTD AAKMVQAKPCYVEDRVTADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPD IYYTPGGQSAPEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPV MSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAAS IHGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRMDGDRLVIHASTQVPWHLR RQVARLVGMKQHKVHVIKERVGGGFGSKQDILLEEVCAWATCVTGRPVLFRYTREEEFIA NTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVD FQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKI LGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKPQNGDWHIGRGVAIIMQKSGIP DIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHAL FDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVS FGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCG TPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVL VPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACGIWLREWHFTPEKILTALEKI >gi|223713536|gb|ACDM01000062.1| GENE 94 96713 - 97492 857 259 aa, chain - ## HITS:1 COG:ECs3753 KEGG:ns NR:ns ## COG: ECs3753 COG1319 # Protein_GI_number: 15833007 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli O157:H7 # 1 259 1 259 259 504 100.0 1e-143 MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWD NGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVL LALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAV AMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYIT GVLVADLYADCQQAGEEAV >gi|223713536|gb|ACDM01000062.1| GENE 95 97543 - 98871 1315 442 aa, chain - ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 442 23 464 464 916 100.0 0 MLILKNVTAVQLHPAKVQEGVDIAIENDVIVAIGDALTQRYPDASFKEMHGRIVMPGIVC SHNHFYSGLSRGIMANIAPCPDFISTLKNLWWRLDRALDEESLYYSGLICSLEAIKSGCT SVIDHHASPAYIGGSLSTLRDAFLKVGLRAMTCFETTDRNNGIKELQEGVEENIRFARLI DEAKKATSEPYLVEAHIGAHAPFTVPDAGLEMLREAVKATGRGLHIHAAEDLYDVSYSHH WYGKDLLARLAQFDLIDSKTLVAHGLYLSKDDITLLNQRDAFLVHNARSNMNNHVGYNHH LSDIRNLALGTDGIGSDMFEEMKFAFFKHRDAGGPLWPDSFAKALTNGNELMSRNFGAKF GLLEAGYKADLTICDYNSPTPLLADNIAGHIAFGMGSGSVHSVMVNGVMVYEDRQFNFDC DSIYAQARKAAASMWRRMDALA >gi|223713536|gb|ACDM01000062.1| GENE 96 98874 - 101972 2690 1032 aa, chain - ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 451 1032 1 582 582 1235 100.0 0 MGDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAG PHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWD EYLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFA QYRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAIC RYMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERL MALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLP ISYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVER LNRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEH RYADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQR WHKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPA ELIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVW KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAW REEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDS LITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTA RRATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLE CNYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKIT VFSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVH QHHHYLLGRVEV >gi|223713536|gb|ACDM01000062.1| GENE 97 102294 - 102872 213 192 aa, chain - ## HITS:1 COG:ygfJ KEGG:ns NR:ns ## COG: ygfJ COG2068 # Protein_GI_number: 16130779 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Escherichia coli K12 # 1 192 1 192 192 395 99.0 1e-110 MSAIDCIITAAGLSSRMGQWKMMLPWEQGTILDTSIKNALQFCSRIILVTGYRGNELHER YANQSNITIIHNPDYAQGLLTSVKAAVPEVQTEHCFLTHGDMPTLTIDIFRKIWSLRNDG AILPLHNGIPGHPILVSKPCLMQAIQRPNVTNMRQALLMGDHYSVEIENAEIILDIDTPD DFITAKERYTEI >gi|223713536|gb|ACDM01000062.1| GENE 98 103143 - 103745 225 200 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_2996 NR:ns ## KEGG: ECIAI1_2996 # Name: yqeC # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 200 57 256 256 419 100.0 1e-116 MFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFTPEAIDALVQRPECD VILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRWSQFADITG LTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQCENAIAQSELLQPLQQHDV EAIWLGDIQEHPAIARRFVN >gi|223713536|gb|ACDM01000062.1| GENE 99 103793 - 105418 1338 541 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 1 541 1 541 541 1048 100.0 0 MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSIVGTIGGGMVERKVIEE SLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGMRPRLVLIGAGHVNRAIAQ SAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAVEALDIRPDNFVLIATNNQDR EALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEEHIARLHAPVGYNIGAETPQEIA ISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGAGDIASGVALRLYHAGFKVIMLEVE KPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSAEAMKLTERGFIPVMVDPACSLLDELK PLCVVDAILAKQNLGTRADMAPVTIALGPGFTAGKDCHAVIETNRGHWLGQVIYSGCAQE NTGVPGNIMGHTTRRVIRAPAAGIMRSNVKLGDLVKEGDVIAWIGEHEIKAPLTGMVRGL LNDGLAVVGGFKIGDIDPRGETADFTSVSDKARAIGGGVLEALMMLMHQGVKATKEVLEV A >gi|223713536|gb|ACDM01000062.1| GENE 100 105639 - 106571 1234 310 aa, chain - ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 310 1 310 310 564 100.0 1e-161 MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIVTHGNGPQVGMINQAFE AAAKTEAHSPMLPMSVCVALSQGYIGYDLQNALREELLSRGINKPVATLVTQVEVDANDP AFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVVASPKPVDIIEKETVKALVDA GQVVITVGGGGIPVIREGNHLRGASAVIDKDWASARLAEMIDADMLIILTAVEKVAINFG KENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAAASFARSRAGREALITVLSKAKEGI EGKTGTVICQ >gi|223713536|gb|ACDM01000062.1| GENE 101 106619 - 108004 1031 461 aa, chain - ## HITS:1 COG:ECs3746 KEGG:ns NR:ns ## COG: ECs3746 COG0044 # Protein_GI_number: 15833000 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli O157:H7 # 1 461 5 465 465 984 100.0 0 MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEIDATGCYVFPGGVDVHT HFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCRLRHQLEVYRGYAAHKAVI DYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKLNDDEVLQALRRLHESGALTT VHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHL SNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYDTEDGMKFILSPPLRNVREQDKLWC GISDGAIDVVATDHCTFSMAQRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITPE RFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQQIQHRHLHDNADYSPWEGFT CQGAIVRTLSRGETIFCDGTFTGKAGRGRFLRRKPFVPPVL >gi|223713536|gb|ACDM01000062.1| GENE 102 108057 - 109268 1648 403 aa, chain - ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 1 403 1 403 403 848 100.0 0 MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEID PMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMA SMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYIIEQSGIRPEFVVSTEPTDCQV YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRP SWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGI PVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWLATE >gi|223713536|gb|ACDM01000062.1| GENE 103 109326 - 110522 1169 398 aa, chain - ## HITS:1 COG:ECs3744 KEGG:ns NR:ns ## COG: ECs3744 COG1171 # Protein_GI_number: 15832998 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1 398 1 398 398 827 100.0 0 MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRPTPLCALDDLANLFGVK KILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTD GNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQ QHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGV LGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWE ILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLM EKLALNKDAVVLVISTEGDTDVKHYREVVWEGKHAVAP >gi|223713536|gb|ACDM01000062.1| GENE 104 110580 - 111767 1470 395 aa, chain - ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 395 2 396 396 805 99.0 0 MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSG LGISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGI RDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFG SLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAK NNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCL AQNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEA SWKPYIIAAMILSRKYAKPGALLEQLLKEAQERVK >gi|223713536|gb|ACDM01000062.1| GENE 105 112246 - 114024 1018 592 aa, chain + ## HITS:1 COG:ygeV KEGG:ns NR:ns ## COG: ygeV COG3829 # Protein_GI_number: 16130771 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1 592 1 592 592 1181 100.0 0 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT >gi|223713536|gb|ACDM01000062.1| GENE 106 114064 - 114543 333 159 aa, chain - ## HITS:1 COG:ygeU KEGG:ns NR:ns ## COG: ygeU COG2080 # Protein_GI_number: 16130770 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Escherichia coli K12 # 1 159 1 159 159 295 100.0 2e-80 MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTA IDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK PREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK >gi|223713536|gb|ACDM01000062.1| GENE 107 114540 - 115418 622 292 aa, chain - ## HITS:1 COG:ygeT KEGG:ns NR:ns ## COG: ygeT COG1319 # Protein_GI_number: 16130769 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs # Organism: Escherichia coli K12 # 1 292 1 292 292 572 100.0 1e-163 MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRG ITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAGPQIRNVATYGGNICNGAT SADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAG SAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLN LQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ >gi|223713536|gb|ACDM01000062.1| GENE 108 115429 - 117726 1822 765 aa, chain - ## HITS:1 COG:ygeS KEGG:ns NR:ns ## COG: ygeS COG1529 # Protein_GI_number: 16130768 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Escherichia coli K12 # 14 765 1 752 752 1530 100.0 0 MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQA RSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAIVVARD ELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQQTIDAAD YQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQALDIPWSCVR VIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMG VNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAG AMRGYGAPQVVFAVESMLDDAATALGIDPVEIRLRNAAREGDANPLTGKRIYSAGLPECL EKGRKIFEWEKRRAECQNQQGNLRRGVGVACFSYTSNTWPVGVEIAGARLLMNQDGTINV QSGATEIGQGADTVFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPAL RSAALLLKEKIIAHAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERG GQLSAESSIKTTTNPPAFGCTFVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHG GMGMGIGWALFEEMIIDAKSGVVRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKS LGEPPIIPVAAAIRNAVKMATGVAINTLPLTPKRLYEEFHLAGLI >gi|223713536|gb|ACDM01000062.1| GENE 109 118141 - 118896 375 251 aa, chain + ## HITS:1 COG:ygeR KEGG:ns NR:ns ## COG: ygeR COG0739 # Protein_GI_number: 16130767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli K12 # 1 251 9 259 259 448 99.0 1e-126 MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS VKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPP VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR YLPPQGSKPKC >gi|223713536|gb|ACDM01000062.1| GENE 110 119339 - 120817 601 492 aa, chain + ## HITS:1 COG:Z5878_2 KEGG:ns NR:ns ## COG: Z5878_2 COG0582 # Protein_GI_number: 15804857 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 EDL933 # 312 484 5 173 205 84 36.0 4e-16 MAYSRHIKAALRAIHADRPNASYGEMREHLRDIAEWELSTGRSDLFEPDMRDLYRDQYGE VGENLVNALASEPLTIDQHRYINEALNVLKACMKRIEAGDSQPLIDYIDEFDATDRFNDQ VSASLSVSAPQELSIPEGKSSITVASLFEQYEQENALNWKPATLSENKASHSALIEIFDY LGLNADANAIKRADMLRVRDVLQQLPKNRKQRFKDAPLVDLLDREDKTDCLDVVTINNKY LIKMAAVFKWAVRNDLIKKNMSEGLELKVPQRKASEARNAFSTEQVGQLLGAAKVYSQKS SGKPYHYYVTALAAITGARLNEVAQLQVKDVRTTGAGTVYIHINEDDSSLPGKSIKNAHS DRCVPLVDGAYGFVLADFMTLVEARRGTDGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLP KVLADRDGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVGV MNDVYKETAAHG >gi|223713536|gb|ACDM01000062.1| GENE 111 120810 - 121451 227 213 aa, chain + ## HITS:1 COG:no KEGG:ROD_49471 NR:ns ## KEGG: ROD_49471 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 4 213 5 209 209 323 76.0 2e-87 MAEYYPPEFGKSRFHCSHCGVYAQQHWKDLIYKPLEGYSNIAETPMSITICEHCDELSYW LLGQLIYPSSSSVEMPNPDMPEDCKADYMEARSIINLSPKGAAALLRLCLQKLMVHLGEP GNNINADIKSLVEKGLPPRIQQAADVCRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIV DDRITRPKEIEAMFQSMPEGPRQGIEKRDKKTA >gi|223713536|gb|ACDM01000062.1| GENE 112 121952 - 122515 402 187 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3437 NR:ns ## KEGG: ECO103_3437 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 187 1 187 187 355 98.0 4e-97 MSNKHKHAGHIIIIKGHSFKSNENGMWNLTEIWKILGLPNNKLPSQWRGKVTKRLTDMQK MHVEKSGIESITYADKQATLKYAGWVSEDFEDMVYAAFESILEMPEVATVIANKMVELGY HTEAELLERHKDDYREAMQTLNKIGKRVDGVKPERIYKAVLHGNLTKSQGLSMISRSSVW YARTVNL >gi|223713536|gb|ACDM01000062.1| GENE 113 122885 - 123112 219 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256024629|ref|ZP_05438494.1| ## NR: gi|256024629|ref|ZP_05438494.1| hypothetical protein E4_14724 [Escherichia sp. 4_1_40B] # 1 75 83 157 157 155 100.0 8e-37 MAFTSEMLGLLFAVVFGDDKSLEAMGTYIACNEASSPDHGFHVTYELYMSGLAEAFNEVC EDKPVIGFLNYLMQD >gi|223713536|gb|ACDM01000062.1| GENE 114 123559 - 124353 332 264 aa, chain + ## HITS:1 COG:no KEGG:EcHS_A3023 NR:ns ## KEGG: EcHS_A3023 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 264 15 278 528 522 99.0 1e-147 MKGKSALTLLLAGIFSCGTCQATGAEVTSESVFNILNSTGAATDKSYLSLNPDKYPNYRL LIHSAKLQNEIKSHYTKDEIQGLLTLTENTRKLTLTEKPWGTFILASTFEDDKTAAETHY DAVWLRDSLWGYMALVSDQGNSVAAKKVLLTLWDYMSTPDQIKRMQDVISNPKRLDGIPV QMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQNDALGLYLDLLIQAINTGTINAEDWQKG DRLKSVALLIAYLDKANFYVMEDS >gi|223713536|gb|ACDM01000062.1| GENE 115 124399 - 125169 212 256 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_3187 NR:ns ## KEGG: EcE24377A_3187 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 256 295 550 550 494 98.0 1e-138 MTSGLERLSNLLSKKDSVFVSDLLREAKVNELDETLSTTRLNHLIDKGYERITLQLDLGG ESPGYLEKDKHYREADAALLNVIYPTNLSKINTRRKEQVLKIVKKLAGPYGIKRYEKDNY QSANFWFNDIKTDTDQNSHAKREKSFIPSTEAEWFFDSWYAKSAAIVYKESRKEEYLNDS VQFMNRSLAQITGENMIGANGRSVPEMALPESYNYIHKSGTLHEAPSPIIPLNWSKASMT LMLKEMSNLINDEGIK >gi|223713536|gb|ACDM01000062.1| GENE 116 125907 - 126248 348 113 aa, chain + ## HITS:1 COG:ECs3726 KEGG:ns NR:ns ## COG: ECs3726 COG1886 # Protein_GI_number: 15832980 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Escherichia coli O157:H7 # 1 113 216 328 328 211 95.0 3e-55 MADHFEYEEDFETDDFDIKKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDE LCAKRIISLLSESEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGHNNVK >gi|223713536|gb|ACDM01000062.1| GENE 117 126385 - 126903 162 172 aa, chain + ## HITS:1 COG:ECs3725 KEGG:ns NR:ns ## COG: ECs3725 COG4790 # Protein_GI_number: 15832979 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscR # Organism: Escherichia coli O157:H7 # 1 172 50 221 221 280 98.0 7e-76 MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP ELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLSINP >gi|223713536|gb|ACDM01000062.1| GENE 118 126913 - 127173 153 86 aa, chain + ## HITS:1 COG:ECs3724 KEGG:ns NR:ns ## COG: ECs3724 COG4794 # Protein_GI_number: 15832978 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscS # Organism: Escherichia coli O157:H7 # 1 86 1 86 86 148 98.0 3e-36 MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF FLMSGWYGERLYSFGIEMLNLAFARG >gi|223713536|gb|ACDM01000062.1| GENE 119 127706 - 127942 178 78 aa, chain + ## HITS:1 COG:ECs3722 KEGG:ns NR:ns ## COG: ECs3722 COG4791 # Protein_GI_number: 15832976 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscT # Organism: Escherichia coli O157:H7 # 1 78 1 78 78 116 100.0 8e-27 MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE RVMPLSFFPEQLQLYIEK >gi|223713536|gb|ACDM01000062.1| GENE 120 127951 - 128682 351 243 aa, chain + ## HITS:1 COG:ECs3721 KEGG:ns NR:ns ## COG: ECs3721 COG1377 # Protein_GI_number: 15832975 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli O157:H7 # 1 235 1 235 373 441 96.0 1e-124 MANKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFDVHHIMSILEYILDH NAKPDIWDYFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLDSLNPVN GLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWGEMLFL LILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERIRKFF LSN >gi|223713536|gb|ACDM01000062.1| GENE 121 128709 - 129071 226 120 aa, chain + ## HITS:1 COG:ECs3721 KEGG:ns NR:ns ## COG: ECs3721 COG1377 # Protein_GI_number: 15832975 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Escherichia coli O157:H7 # 1 120 254 373 373 227 94.0 4e-60 MIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT HRRYDYVSFENIDEILRLLLWLEDVENAGQPVPDEQLSSEDKFIEGEEKEIENKDDNLKN >gi|223713536|gb|ACDM01000062.1| GENE 122 129428 - 129928 166 166 aa, chain - ## HITS:1 COG:ECs3720 KEGG:ns NR:ns ## COG: ECs3720 COG2771 # Protein_GI_number: 15832974 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 166 1 166 166 296 95.0 2e-80 MQVFSSDVYFTVVTNALLASQKEYYSDLVALVDLGHSFVVIDEHQHRNLKPNTEPVNILL SNNFIRINKNIRLSDLTHFLISNLHTQNVYSTQEALTHDDIDILRLCVSYSLKQVAIIKG IDYKTVSYHKIRALNKLNIKGTVELFIALCEWDKHYFKLQSCVRES >gi|223713536|gb|ACDM01000062.1| GENE 123 130185 - 131366 304 393 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3424 NR:ns ## KEGG: ECO103_3424 # Name: not_defined # Def: type III secretion protein EprH # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 393 1 393 393 739 99.0 0 MENNDKFLSQDLLESYAIRLLSGPLNGCEYEILNGRLLVIIGNDVSLGRSDAFSELPENT IVVPYGELTGSFEIIITTDPDLVVTFRELTAQEPEDRTLTLNQQIEVLGLKFAVKEKNEV WQYSLPGIIENNIISTKQHFFSSKLFKYVMLFFLFAIIFIAFYIVNASNDPQLRHIDKIL VNKNRNYEILYGRDHVIYINTNILDEAVWVKQALEKNQPGKPVRVINPDDESIRIFSWLA DNFPDLQYFKLQLLDASNLRLTVSKQRNAITQQLIDNLIKGLLQTMPYASNISIAVLDDN VLESQAIETLSAIGLSYEKYKTANNVYFNIIGTLSDSELNKINNYVDEYYKQWGKQYVRF NVNLKNQDTNNSSFSYGDNRFEKSQGSKWTFQE >gi|223713536|gb|ACDM01000062.1| GENE 124 131380 - 131619 281 79 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3190 NR:ns ## KEGG: ECUMN_3190 # Name: prgI # Def: type III secretion system needle protein # Organism: E.coli_UMN026 # Pathway: Bacterial secretion system [PATH:eum03070] # 1 79 1 79 79 135 100.0 6e-31 MADWNGYIMDISKQFDQGVDDLNQQVEKALEDLATNPSDPKFLAEYQSALAEYTLYRNAQ SNVVKAYKDLDSAIIQNFR >gi|223713536|gb|ACDM01000062.1| GENE 125 131639 - 131971 257 110 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_4132 NR:ns ## KEGG: ECH74115_4132 # Name: eprJ # Def: type III secretion apparatus protein EprJ # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 110 1 110 110 187 100.0 7e-47 MSVSNMPPIDRAEQSTAHEIQQAKVIDLNDRVLNLDNPDDKMISAFANYAVQTENWQQNA LQALTSDKKGLTPEKLLVLQDHVLNYNVEVSLVGTLARKIVAAVETLTRS >gi|223713536|gb|ACDM01000062.1| GENE 126 131968 - 132702 99 244 aa, chain + ## HITS:1 COG:ECs3716 KEGG:ns NR:ns ## COG: ECs3716 COG4669 # Protein_GI_number: 15832970 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, lipoprotein EscJ # Organism: Escherichia coli O157:H7 # 1 244 1 244 244 457 100.0 1e-129 MKYISLLLFILLLCGCKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEP TDFASAVDWLKIYNLPGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDG IVSSRVHVSYDVDTGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYEN ISVVLSKRRDIIEQAPTYEISEPVFAYDKAMPVSILLALISVATCWLLWKYRAILTNLVR LKIK >gi|223713536|gb|ACDM01000062.1| GENE 127 133240 - 133947 244 235 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3186 NR:ns ## KEGG: ECUMN_3186 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 235 22 256 256 398 89.0 1e-110 MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGY YDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVT KLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQ EFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL >gi|223713536|gb|ACDM01000062.1| GENE 128 133869 - 134042 93 57 aa, chain - ## HITS:1 COG:no KEGG:Z4177 NR:ns ## KEGG: Z4177 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 14 57 1 44 44 62 79.0 6e-09 MRKKIPQALKNHEMIKILQLDYIQIIKLEPGSYKSSGLAKTELFISKECVSNIFSTK >gi|223713536|gb|ACDM01000062.1| GENE 129 134169 - 134324 120 51 aa, chain + ## HITS:1 COG:ECs3712 KEGG:ns NR:ns ## COG: ECs3712 COG2197 # Protein_GI_number: 15832966 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 51 1 51 210 105 98.0 1e-23 MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTA >gi|223713536|gb|ACDM01000062.1| GENE 130 134358 - 134801 81 147 aa, chain + ## HITS:1 COG:ECs3712 KEGG:ns NR:ns ## COG: ECs3712 COG2197 # Protein_GI_number: 15832966 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 147 64 210 210 296 100.0 1e-80 MGAELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISN GYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHR LNIMKKLDVHSGIELIKTALRMGVCTI >gi|223713536|gb|ACDM01000062.1| GENE 131 134846 - 135082 78 78 aa, chain - ## HITS:1 COG:pbl KEGG:ns NR:ns ## COG: pbl COG0741 # Protein_GI_number: 16130758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli K12 # 1 78 61 138 138 167 100.0 4e-42 MHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQK KRQQYAPKYILYIPGLMN >gi|223713536|gb|ACDM01000062.1| GENE 132 135150 - 135338 88 62 aa, chain + ## HITS:1 COG:no KEGG:ECSE_3112 NR:ns ## KEGG: ECSE_3112 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 62 11 72 72 91 100.0 8e-18 MLSFFRLLSTRAIALIKFGSILNIVPASLEQELLAKDIFVINIQNVKMVKNLTFGERIFF HV >gi|223713536|gb|ACDM01000062.1| GENE 133 135405 - 135623 146 72 aa, chain - ## HITS:1 COG:no KEGG:JW5456 NR:ns ## KEGG: JW5456 # Name: ygeI # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MTNPIGINNLSQSSNIANATGDEVVSLDKHINTSATDTDQIQAFIVSTWMAPFQNDMYSE DNPISPYYKIEW >gi|223713536|gb|ACDM01000062.1| GENE 134 135791 - 137170 218 459 aa, chain - ## HITS:1 COG:ygeH_2 KEGG:ns NR:ns ## COG: ygeH_2 COG0457 # Protein_GI_number: 16130756 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 115 459 1 345 345 676 100.0 0 MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVVLLESAGHVVLKDMIIES VWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYS IAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKP DYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPER SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC LLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV PNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR >gi|223713536|gb|ACDM01000062.1| GENE 135 137505 - 138029 142 174 aa, chain - ## HITS:1 COG:ygeG KEGG:ns NR:ns ## COG: ygeG COG0457 # Protein_GI_number: 16130755 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 12 174 1 163 163 298 99.0 5e-81 MASRDTSQRNILSTETIEIFNNSDEWANQLKHALSKGENLALLHGLTPDILDRIYAYAFD YHEKGNITDAEIYYKFLCIYAFENHEYLKDFASVCQPKKKYQQAYDLYKLSYNYFPYDDY SVIYRMGQCQIGAKNIDNAMQCFYHIINNCEDDSVKSKAQAYIELLNDNSEDNG >gi|223713536|gb|ACDM01000062.1| GENE 136 138904 - 139329 139 141 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3178 NR:ns ## KEGG: ECUMN_3178 # Name: yqeK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 141 1 141 141 223 97.0 1e-57 MDIEFSQIHEMVYMHDIVNSDSKKKPRIPLKKFLNAENVLTQTTSWTLNSRYVNVNSVNK VNVKSKVKNSYISRSVNDEFSLTDDEINSFKETLVLSSIDSLSKLVLNNPLSVLFTSTVR RNNNRAKMNVEFDSWICTRCC >gi|223713536|gb|ACDM01000062.1| GENE 137 139478 - 139960 97 160 aa, chain - ## HITS:1 COG:no KEGG:JW5455 NR:ns ## KEGG: JW5455 # Name: yqeJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 160 1 160 160 315 100.0 2e-85 MIDYKKNLLFILVFISGFILFTVYSYTAEKMIYNETCTANWVIFNDQGRANLTIDFMYNK KNKTGTVALSGTWQQGNRESKSIRRNIEYTWIENYDTAHLTSKKVNKFEIMDQVDDDRLA QLIPDFYVFPEKSVSYNILKQGKHAFILSIGNRAIMHCAR >gi|223713536|gb|ACDM01000062.1| GENE 138 139953 - 140288 178 111 aa, chain - ## HITS:1 COG:yqeI KEGG:ns NR:ns ## COG: yqeI COG3710 # Protein_GI_number: 16130751 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Escherichia coli K12 # 1 111 159 269 269 239 100.0 1e-63 MLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRIL DSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREVNRD >gi|223713536|gb|ACDM01000062.1| GENE 139 141096 - 141614 172 172 aa, chain - ## HITS:1 COG:yqeH KEGG:ns NR:ns ## COG: yqeH COG2771 # Protein_GI_number: 16130750 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1 172 59 230 230 345 99.0 2e-95 MWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL VSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFT IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH >gi|223713536|gb|ACDM01000062.1| GENE 140 142188 - 143417 615 409 aa, chain - ## HITS:1 COG:ECs3702 KEGG:ns NR:ns ## COG: ECs3702 COG0814 # Protein_GI_number: 15832956 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 409 1 409 409 707 100.0 0 MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQ FILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHM VIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLL TTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLI ICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKS FLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYA ISGPLIAMILFIMPTLSTYLIPALKPWRSIGNLITLIVGILCVSVMFFS >gi|223713536|gb|ACDM01000062.1| GENE 141 143672 - 144853 997 393 aa, chain + ## HITS:1 COG:yqeF KEGG:ns NR:ns ## COG: yqeF COG0183 # Protein_GI_number: 16130748 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 393 2 394 394 719 100.0 0 MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAG AGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSR APHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLAREYGISRQLQDAYAL SSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGS VTAGNASSINDGAAAVMMMSEAKARALNLPVLARIRAFASVGVDPALMGIAPVYATRRCL ERVGWQLAEVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVS LVHEMVKRNARKGLATLCIGGGQGVALTIERDE >gi|223713536|gb|ACDM01000062.1| GENE 142 145248 - 145976 690 242 aa, chain + ## HITS:1 COG:kduI KEGG:ns NR:ns ## COG: kduI COG3717 # Protein_GI_number: 16130747 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Escherichia coli K12 # 1 242 37 278 278 512 100.0 1e-145 MVYSHIDRIIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCY EIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNL TSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACV FHMMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD LR >gi|223713536|gb|ACDM01000062.1| GENE 143 146006 - 146767 752 253 aa, chain + ## HITS:1 COG:kduD KEGG:ns NR:ns ## COG: kduD COG1028 # Protein_GI_number: 16130746 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 253 1 253 253 493 100.0 1e-139 MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRFL SLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSV FFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHN INVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVN GYTIAVDGGWLAR >gi|223713536|gb|ACDM01000062.1| GENE 144 147142 - 148500 1390 452 aa, chain + ## HITS:1 COG:ECs3698 KEGG:ns NR:ns ## COG: ECs3698 COG0477 # Protein_GI_number: 15832952 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 452 21 472 472 817 100.0 0 MNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNG WLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEM ASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPN SPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVF LGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDK AGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVV WILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVG ITFWLIPETKNVTLEHIERKLMAGEKLRNIGV >gi|223713536|gb|ACDM01000062.1| GENE 145 148629 - 149321 692 230 aa, chain + ## HITS:1 COG:ECs3697 KEGG:ns NR:ns ## COG: ECs3697 COG1794 # Protein_GI_number: 15832951 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Escherichia coli O157:H7 # 1 230 1 230 230 456 99.0 1e-128 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKT GDILAEAALGLQRTGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRV ALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYYAQ VIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFMLS >gi|223713536|gb|ACDM01000062.1| GENE 146 149308 - 150243 752 311 aa, chain - ## HITS:1 COG:lysR KEGG:ns NR:ns ## COG: lysR COG0583 # Protein_GI_number: 16130743 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 311 1 311 311 579 99.0 1e-165 MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHP TVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARY PDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSLDEVCVLPPGHPLAV KKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHNAASVCAMVRAGVGV SVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSGHLQAGLPKLVTS LDAILSSATTA >gi|223713536|gb|ACDM01000062.1| GENE 147 150365 - 151627 1213 420 aa, chain + ## HITS:1 COG:lysA KEGG:ns NR:ns ## COG: lysA COG0019 # Protein_GI_number: 16130742 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Escherichia coli K12 # 1 411 1 411 420 830 99.0 0 MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIH ILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVN AGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR HHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSHHFVLVDA GFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRA LPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL >gi|223713536|gb|ACDM01000062.1| GENE 148 151634 - 152665 918 343 aa, chain - ## HITS:1 COG:galR KEGG:ns NR:ns ## COG: galR COG1609 # Protein_GI_number: 16130741 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 343 1 343 343 658 100.0 0 MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTE TVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALV VHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTRIG YLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGEPDESGGEQAMTELLGRGRNFTA VACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD >gi|223713536|gb|ACDM01000062.1| GENE 149 153250 - 155409 1985 719 aa, chain + ## HITS:1 COG:aas_2 KEGG:ns NR:ns ## COG: aas_2 COG0318 # Protein_GI_number: 16130740 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli K12 # 198 719 1 522 522 1065 100.0 0 MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGILLGLFLPVRPVFAVYTS ISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVIFPEGRITTTGSLMKIYDG AGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQVAMPDAPRARD RRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTK TLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAIARRRMPAMMNYTAGVKGLTSAITA AEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQV KQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFG LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPYDFYR LRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGM DARLLSVPGIEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVR FDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFT TDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE >gi|223713536|gb|ACDM01000062.1| GENE 150 155402 - 156595 1331 397 aa, chain + ## HITS:1 COG:ygeD KEGG:ns NR:ns ## COG: ygeD COG0477 # Protein_GI_number: 16130739 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 397 1 397 397 642 100.0 0 MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVG AYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAAYSPAK YGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVA NIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGETRFSLVGTSLFWGAGVTLRFLLV LWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVLIFS LQHELLPAYALLMLIGVMGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLG IYSLAVMIGIPVVPIGIGFGALFALAITALWIWQRRH >gi|223713536|gb|ACDM01000062.1| GENE 151 156627 - 157667 1133 346 aa, chain - ## HITS:1 COG:tas KEGG:ns NR:ns ## COG: tas COG0667 # Protein_GI_number: 16130738 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 346 1 346 346 699 100.0 0 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQP FVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYPAP >gi|223713536|gb|ACDM01000062.1| GENE 152 157775 - 157993 264 72 aa, chain - ## HITS:1 COG:no KEGG:G2583_3488 NR:ns ## KEGG: G2583_3488 # Name: ygdR # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 72 1 72 72 132 100.0 4e-30 MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ INRDDVSQIIER >gi|223713536|gb|ACDM01000062.1| GENE 153 158131 - 158844 794 237 aa, chain - ## HITS:1 COG:ECs3689 KEGG:ns NR:ns ## COG: ECs3689 COG0861 # Protein_GI_number: 15832943 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Escherichia coli O157:H7 # 1 237 1 237 237 381 100.0 1e-106 MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRLGLAGAMVMR LALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKT RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARSIGDFVE RHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAMFFSIAVESLNLIRNKKNPL >gi|223713536|gb|ACDM01000062.1| GENE 154 158913 - 159602 674 229 aa, chain - ## HITS:1 COG:mutH KEGG:ns NR:ns ## COG: mutH COG3066 # Protein_GI_number: 16130735 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair protein # Organism: Escherichia coli K12 # 1 229 1 229 229 433 100.0 1e-121 MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENLKRDKGWIGVLLEIWLG ASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRV LWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVERITARHGEY LQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFTSALLARHFLIQ >gi|223713536|gb|ACDM01000062.1| GENE 155 159788 - 159934 73 48 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3390 NR:ns ## KEGG: ECO103_3390 # Name: ygdT # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 48 1 48 48 95 100.0 5e-19 MLSTESWDNCEKPPLLFPFTALTCDETPVFSGSVLNLVAHSVDKYGIG >gi|223713536|gb|ACDM01000062.1| GENE 156 160287 - 160817 271 176 aa, chain + ## HITS:1 COG:ECs3687 KEGG:ns NR:ns ## COG: ECs3687 COG0494 # Protein_GI_number: 15832941 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 340 100.0 1e-93 MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGL SRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPE FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPKPQNASAYRRKRG >gi|223713536|gb|ACDM01000062.1| GENE 157 160830 - 163076 2099 748 aa, chain + ## HITS:1 COG:ptsP KEGG:ns NR:ns ## COG: ptsP COG3605 # Protein_GI_number: 16130733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction protein containing GAF and PtsI domains # Organism: Escherichia coli K12 # 1 748 1 748 748 1434 100.0 0 MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCYYLMATRGLKK PRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIQRRQ LLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLTALFGQYRQTRIRALPAAPGV AIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAA IFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVIEKFAEQFAALSDNYLKERAGDLRA LGQRLLFHLDDANQGPNAWPERFILVADELSATTLAELPQDRLVGVVVRDGAANSHAAIM VRALGIPTVMGADIQPSVLHRRTLIVDGYRGELLVDPEPVLLQEYQRLISEEIELSRLAE DDVNLPAQLKSGERIKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQV AQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVR AMLRANAATGNLNILLPMVTSLDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPS MVFMLPHLAKRVDFISVGTNDLTQYILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEI HGIDLRLCGEMAGDPMCVAILIGLGYRHLSMNGRSVARAKYLLRRIDYAEAENLAQRSLE AQLATEVRHQVAAFMERRGMGGLIRGGL >gi|223713536|gb|ACDM01000062.1| GENE 158 163227 - 164102 1130 291 aa, chain + ## HITS:1 COG:ECs3685 KEGG:ns NR:ns ## COG: ECs3685 COG0682 # Protein_GI_number: 15832939 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Escherichia coli O157:H7 # 1 291 1 291 291 548 100.0 1e-156 MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRRANRPGSGWTKNEVENL LYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSFHGGLIGVIVVMIIFARRT KRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFPFAMLFPGSRTEDILLLQTN PQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYIRKPRPMGAVSGLFLIGYGAFRI IVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVIMMVWAYRRSPQQHVS >gi|223713536|gb|ACDM01000062.1| GENE 159 164130 - 164903 920 257 aa, chain + ## HITS:1 COG:ECs3684 KEGG:ns NR:ns ## COG: ECs3684 COG0207 # Protein_GI_number: 15832938 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Escherichia coli O157:H7 # 1 257 8 264 264 553 100.0 1e-158 MQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDT NIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRR IIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHM MAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDF EIEGYDPHPGIKAPVAI >gi|223713536|gb|ACDM01000062.1| GENE 160 165087 - 165557 253 156 aa, chain + ## HITS:1 COG:ppdA KEGG:ns NR:ns ## COG: ppdA COG2165 # Protein_GI_number: 16130730 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1 156 1 156 156 291 99.0 4e-79 MKTQRGYTLIETLVAMLILVTLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWH NRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTA WAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL >gi|223713536|gb|ACDM01000062.1| GENE 161 165548 - 166111 648 187 aa, chain + ## HITS:1 COG:ppdB KEGG:ns NR:ns ## COG: ppdB COG4795 # Protein_GI_number: 16130729 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Escherichia coli K12 # 1 187 1 187 187 382 100.0 1e-106 MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK HLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASY SVTGFNL >gi|223713536|gb|ACDM01000062.1| GENE 162 166108 - 166515 254 135 aa, chain + ## HITS:1 COG:no KEGG:B21_02633 NR:ns ## KEGG: B21_02633 # Name: ygdB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 135 1 135 135 219 99.0 4e-56 MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKM HSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGW SDFCPLKERALYQLP >gi|223713536|gb|ACDM01000062.1| GENE 163 166557 - 166823 83 88 aa, chain + ## HITS:1 COG:ppdC KEGG:ns NR:ns ## COG: ppdC COG4967 # Protein_GI_number: 16130727 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilV # Organism: Escherichia coli K12 # 1 88 20 107 107 153 100.0 9e-38 MVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQA GCVSISVTLVSPGGREGEMTRLHCPNRQ >gi|223713536|gb|ACDM01000062.1| GENE 164 166836 - 170204 3235 1122 aa, chain + ## HITS:1 COG:recC KEGG:ns NR:ns ## COG: recC COG1330 # Protein_GI_number: 16130726 # Func_class: L Replication, recombination and repair # Function: Exonuclease V gamma subunit # Organism: Escherichia coli K12 # 1 1122 1 1122 1122 2226 100.0 0 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS >gi|223713536|gb|ACDM01000062.1| GENE 165 170380 - 173268 2697 962 aa, chain + ## HITS:1 COG:ptr KEGG:ns NR:ns ## COG: ptr COG1025 # Protein_GI_number: 16130725 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Secreted/periplasmic Zn-dependent peptidases, insulinase-like # Organism: Escherichia coli K12 # 1 962 1 962 962 1854 100.0 0 MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSD PQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMR MAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKP LPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNS AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDK GLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDK ISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSR YFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANN GLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMP AQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDV QKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLG QIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAE AKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLL TPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEK NE >gi|223713536|gb|ACDM01000062.1| GENE 166 173261 - 176803 2893 1180 aa, chain + ## HITS:1 COG:recB KEGG:ns NR:ns ## COG: recB COG1074 # Protein_GI_number: 16130724 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Escherichia coli K12 # 1 1180 1 1180 1180 2297 99.0 0 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA GGGTPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIY LFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA >gi|223713536|gb|ACDM01000062.1| GENE 167 176803 - 178629 1313 608 aa, chain + ## HITS:1 COG:recD KEGG:ns NR:ns ## COG: recD COG0507 # Protein_GI_number: 16130723 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Escherichia coli K12 # 1 608 1 608 608 1163 100.0 0 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL AALFSSRE >gi|223713536|gb|ACDM01000062.1| GENE 168 178691 - 180022 1288 443 aa, chain - ## HITS:1 COG:ECs3675_1 KEGG:ns NR:ns ## COG: ECs3675_1 COG0548 # Protein_GI_number: 15832929 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1 291 1 291 291 581 100.0 1e-166 MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLV VVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTP LQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSV TGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDDGDIVSELFPNEAQARVEAQEEK GDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRR ATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKI GEMACVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDL LPESKKQLYNYQRKSKVLMADLG >gi|223713536|gb|ACDM01000062.1| GENE 169 180254 - 181507 1214 417 aa, chain + ## HITS:1 COG:ECs3674 KEGG:ns NR:ns ## COG: ECs3674 COG0860 # Protein_GI_number: 15832928 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli O157:H7 # 1 417 31 447 447 783 100.0 0 MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKY KQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQN VKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPG KAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNE DIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQN ASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFA VLKAPDIPSILVETAFISNVEEERKLKTATFQQEVAESILAGIKAYFADGATLARRG Prediction of potential genes in microbial genomes Time: Mon May 16 19:13:23 2011 Seq name: gi|223713535|gb|ACDM01000063.1| Escherichia sp. 4_1_40B cont1.63, whole genome shotgun sequence Length of sequence - 60241 bp Number of predicted genes - 53, with homology - 53 Number of transcription units - 27, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 21 - 80 4.4 1 1 Tu 1 . + CDS 206 - 1303 1151 ## COG2821 Membrane-bound lytic murein transglycosylase + Term 1338 - 1378 4.1 + Prom 1410 - 1469 7.0 2 2 Tu 1 . + CDS 1542 - 2348 927 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 + Term 2356 - 2401 12.8 - Term 2341 - 2389 11.2 3 3 Op 1 7/0.091 - CDS 2399 - 2842 423 ## COG2166 SufE protein probably involved in Fe-S center assembly 4 3 Op 2 . - CDS 2842 - 4047 1076 ## COG0520 Selenocysteine lyase - Prom 4175 - 4234 5.2 + Prom 4160 - 4219 4.3 5 4 Tu 1 . + CDS 4239 - 4466 359 ## ECIAI1_2919 hypothetical protein + Prom 4738 - 4797 7.8 6 5 Op 1 6/0.091 + CDS 4817 - 5734 642 ## COG0583 Transcriptional regulator 7 5 Op 2 5/0.273 + CDS 5753 - 6148 508 ## COG2363 Uncharacterized small membrane protein 8 5 Op 3 . + CDS 6141 - 7241 1145 ## COG2933 Predicted SAM-dependent methyltransferase - Term 7233 - 7273 1.2 9 6 Tu 1 4/0.455 - CDS 7285 - 8016 547 ## COG1349 Transcriptional regulators of sugar metabolism - Term 8029 - 8060 3.5 10 7 Op 1 5/0.273 - CDS 8074 - 8496 411 ## COG4154 Fucose dissimilation pathway protein FucU 11 7 Op 2 4/0.455 - CDS 8498 - 9946 1058 ## COG1070 Sugar (pentulose and hexulose) kinases 12 7 Op 3 3/0.636 - CDS 10025 - 11800 1823 ## COG2407 L-fucose isomerase and related proteins 13 7 Op 4 . - CDS 11833 - 13149 888 ## COG0738 Fucose permease - Prom 13265 - 13324 6.7 + Prom 13575 - 13634 2.4 14 8 Op 1 5/0.273 + CDS 13696 - 14343 628 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 15 8 Op 2 . + CDS 14371 - 15519 1284 ## COG1454 Alcohol dehydrogenase, class IV + Term 15651 - 15688 1.0 - Term 15525 - 15567 8.2 16 9 Tu 1 . - CDS 15574 - 16329 517 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) - Prom 16350 - 16409 2.7 17 10 Op 1 10/0.091 - CDS 16441 - 17808 1371 ## COG1760 L-serine deaminase - Term 17826 - 17857 3.9 18 10 Op 2 4/0.455 - CDS 17866 - 19155 1560 ## COG0814 Amino acid permeases - Prom 19351 - 19410 6.8 - Term 19666 - 19701 4.0 19 11 Tu 1 6/0.091 - CDS 19712 - 21076 1434 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 21112 - 21171 1.7 20 12 Tu 1 . - CDS 21188 - 22036 633 ## COG0780 Enzyme related to GTP cyclohydrolase I - Prom 22128 - 22187 3.6 + Prom 22011 - 22070 3.5 21 13 Tu 1 . + CDS 22104 - 22649 524 ## ECO103_3336 SecY interacting protein Syd + Term 22732 - 22786 0.5 + Prom 23187 - 23246 6.4 22 14 Op 1 7/0.091 + CDS 23271 - 23600 351 ## COG3098 Uncharacterized protein conserved in bacteria 23 14 Op 2 5/0.273 + CDS 23600 - 24382 192 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 24 14 Op 3 4/0.455 + CDS 24400 - 24849 577 ## COG0716 Flavodoxins + Term 24872 - 24906 -0.1 + Prom 25089 - 25148 5.7 25 15 Op 1 7/0.091 + CDS 25284 - 26636 1521 ## COG0477 Permeases of the major facilitator superfamily 26 15 Op 2 5/0.273 + CDS 26638 - 27978 1545 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 27 15 Op 3 . + CDS 27999 - 29339 1741 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Term 29355 - 29386 3.2 - Term 29336 - 29379 6.1 28 16 Tu 1 . - CDS 29571 - 32327 2509 ## COG0642 Signal transduction histidine kinase - Prom 32385 - 32444 3.6 + Prom 32115 - 32174 1.6 29 17 Op 1 8/0.091 + CDS 32384 - 33685 980 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 30 17 Op 2 3/0.636 + CDS 33733 - 35967 2297 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases + Term 35980 - 36013 1.1 31 18 Op 1 8/0.091 + CDS 36045 - 36293 286 ## COG2336 Growth regulator 32 18 Op 2 3/0.636 + CDS 36293 - 36628 223 ## COG2337 Growth inhibitor 33 18 Op 3 5/0.273 + CDS 36699 - 37490 1028 ## COG1694 Predicted pyrophosphatase + Term 37504 - 37557 1.1 + Prom 37610 - 37669 5.3 34 19 Op 1 8/0.091 + CDS 37718 - 39355 1657 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 39374 - 39411 9.1 35 19 Op 2 . + CDS 39443 - 40741 1508 ## COG0148 Enolase + Term 40766 - 40797 4.1 - Term 40754 - 40785 4.1 36 20 Op 1 . - CDS 40801 - 41673 98 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 37 20 Op 2 . - CDS 41687 - 41827 179 ## ECBD_0952 hypothetical protein - Prom 41888 - 41947 4.2 + Prom 41681 - 41740 7.4 38 21 Tu 1 . + CDS 41966 - 42637 220 ## PROTEIN SUPPORTED gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 + Term 42656 - 42708 5.1 39 22 Op 1 6/0.091 - CDS 44010 - 45488 1417 ## COG1070 Sugar (pentulose and hexulose) kinases 40 22 Op 2 . - CDS 45515 - 46642 1226 ## COG0477 Permeases of the major facilitator superfamily - Prom 46693 - 46752 3.4 + Prom 46894 - 46953 6.6 41 23 Op 1 8/0.091 + CDS 47111 - 47896 180 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 42 23 Op 2 5/0.273 + CDS 47966 - 49420 1434 ## COG0277 FAD/FMN-containing dehydrogenases + Term 49428 - 49470 8.0 43 24 Op 1 3/0.636 + CDS 49514 - 50851 1119 ## COG0477 Permeases of the major facilitator superfamily 44 24 Op 2 29/0.000 + CDS 50829 - 51608 721 ## COG2086 Electron transfer flavoprotein, beta subunit 45 24 Op 3 . + CDS 51605 - 52465 711 ## COG2025 Electron transfer flavoprotein, alpha subunit + Term 52676 - 52708 0.3 - Term 52568 - 52604 -0.8 46 25 Op 1 2/0.818 - CDS 52613 - 53188 564 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 47 25 Op 2 12/0.000 - CDS 53205 - 53465 214 ## COG2440 Ferredoxin-like protein 48 25 Op 3 1/1.000 - CDS 53456 - 54727 735 ## COG0644 Dehydrogenases (flavoproteins) 49 25 Op 4 . - CDS 54805 - 55167 417 ## COG0720 6-pyruvoyl-tetrahydropterin synthase - Prom 55260 - 55319 3.4 + Prom 55264 - 55323 6.2 50 26 Op 1 11/0.000 + CDS 55486 - 57285 1767 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) 51 26 Op 2 11/0.000 + CDS 57285 - 58997 1878 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 52 26 Op 3 . + CDS 59071 - 59805 855 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes + Term 59826 - 59863 5.3 + Prom 59835 - 59894 3.9 53 27 Tu 1 . + CDS 60070 - 60222 134 ## G2583_3410 small toxic membrane polypeptide Predicted protein(s) >gi|223713535|gb|ACDM01000063.1| GENE 1 206 - 1303 1151 365 aa, chain + ## HITS:1 COG:ECs3673 KEGG:ns NR:ns ## COG: ECs3673 COG2821 # Protein_GI_number: 15832927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase # Organism: Escherichia coli O157:H7 # 1 365 1 365 365 740 100.0 0 MKGRWVKYLLMGTVVAMLAACSSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFA EQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTG YYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSLMDNFIMD VQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSE AEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDN NGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPGAG NVFSG >gi|223713535|gb|ACDM01000063.1| GENE 2 1542 - 2348 927 268 aa, chain + ## HITS:1 COG:ygdL KEGG:ns NR:ns ## COG: ygdL COG1179 # Protein_GI_number: 16130719 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Escherichia coli K12 # 1 268 1 268 268 515 100.0 1e-146 MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLI DMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSV GYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAK LRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGA ATMVTATFGFVAVSHALKKMMAKAARQG >gi|223713535|gb|ACDM01000063.1| GENE 3 2399 - 2842 423 147 aa, chain - ## HITS:1 COG:ECs3671 KEGG:ns NR:ns ## COG: ECs3671 COG2166 # Protein_GI_number: 15832925 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Escherichia coli O157:H7 # 1 147 1 147 147 275 100.0 2e-74 MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAG CENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELG LRAQLSASRSQGLNALSEAIIAATKQV >gi|223713535|gb|ACDM01000063.1| GENE 4 2842 - 4047 1076 401 aa, chain - ## HITS:1 COG:csdA KEGG:ns NR:ns ## COG: csdA COG0520 # Protein_GI_number: 16130717 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli K12 # 1 401 1 401 401 791 100.0 0 MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQR LTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHH ANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLA RAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLE AMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESW SRSLATLAEDALAKRPGFRSFRCQDSSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQ PLLAELGVTGTLRASFAPYNTKSDVDALVNAVDRALELLVD >gi|223713535|gb|ACDM01000063.1| GENE 5 4239 - 4466 359 75 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_2919 NR:ns ## KEGG: ECIAI1_2919 # Name: ygdI # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 75 1 75 75 129 100.0 3e-29 MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQ QINRTDVKEMVELDQ >gi|223713535|gb|ACDM01000063.1| GENE 6 4817 - 5734 642 305 aa, chain + ## HITS:1 COG:ECs3668 KEGG:ns NR:ns ## COG: ECs3668 COG0583 # Protein_GI_number: 15832922 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 604 100.0 1e-173 MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL LLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAY PGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPL KTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALAN NVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR FRYEQ >gi|223713535|gb|ACDM01000063.1| GENE 7 5753 - 6148 508 131 aa, chain + ## HITS:1 COG:ECs3667 KEGG:ns NR:ns ## COG: ECs3667 COG2363 # Protein_GI_number: 15832921 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Escherichia coli O157:H7 # 1 131 1 131 131 204 100.0 3e-53 MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA IRLKRKGVSHE >gi|223713535|gb|ACDM01000063.1| GENE 8 6141 - 7241 1145 366 aa, chain + ## HITS:1 COG:ECs3666 KEGG:ns NR:ns ## COG: ECs3666 COG2933 # Protein_GI_number: 15832920 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Escherichia coli O157:H7 # 1 366 1 366 366 780 100.0 0 MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELP FSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFC RKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKF PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVD NGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRE TIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVG GRRDER >gi|223713535|gb|ACDM01000063.1| GENE 9 7285 - 8016 547 243 aa, chain - ## HITS:1 COG:fucR KEGG:ns NR:ns ## COG: fucR COG1349 # Protein_GI_number: 16130712 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 243 1 243 243 471 100.0 1e-133 MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILRNHGRAKYIHR QNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVF TNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSG ALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSL VTA >gi|223713535|gb|ACDM01000063.1| GENE 10 8074 - 8496 411 140 aa, chain - ## HITS:1 COG:ECs3664 KEGG:ns NR:ns ## COG: ECs3664 COG4154 # Protein_GI_number: 15832918 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose dissimilation pathway protein FucU # Organism: Escherichia coli O157:H7 # 1 140 1 140 140 268 100.0 2e-72 MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI VITGERAKYGNILLKKGVTP >gi|223713535|gb|ACDM01000063.1| GENE 11 8498 - 9946 1058 482 aa, chain - ## HITS:1 COG:fucK KEGG:ns NR:ns ## COG: fucK COG1070 # Protein_GI_number: 16130710 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 482 1 482 482 980 100.0 0 MLSGYIAGAIMKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENNTWHQWS LDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISWKCPRTAAV MDNIERLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERAHAWLFISSLINHRLTG EFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIGTLQNSAAAMLGL PVGIPVISAGHDTQFALFGAGAEQNEPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELD SQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAPGADGVKMQCDLLSCQN AGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKASELLLVGGGSRNTLWNQI KANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEARAQIHYQYRYFYPQTEPEFIE EV >gi|223713535|gb|ACDM01000063.1| GENE 12 10025 - 11800 1823 591 aa, chain - ## HITS:1 COG:fucI KEGG:ns NR:ns ## COG: fucI COG2407 # Protein_GI_number: 16130709 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Escherichia coli K12 # 1 591 1 591 591 1222 100.0 0 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDT CIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVY LAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSL GGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQ GQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGTAQVFA DVRTYWSPEAIERVTGHKLDGLAEHGIIHLINSGSAALDGSCKQRDSEGNPTMKPHWEIS QQEADACLAATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMTRVNIIKGLGPVLQIAEGWS VELPKDVHDILNKRTNSTWPTTWFAPRLTGKGPFTDVYSVMANWGANHGVLTIGHVGADF ITLASMLRIPVCMHNVEETKVYRPSAWAAHGMDIEGQDYRACQNYGPLYKR >gi|223713535|gb|ACDM01000063.1| GENE 13 11833 - 13149 888 438 aa, chain - ## HITS:1 COG:fucP KEGG:ns NR:ns ## COG: fucP COG0738 # Protein_GI_number: 16130708 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Escherichia coli K12 # 1 438 1 438 438 807 99.0 0 MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTN FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMVLCLISAFAGGHVGLIALTLCSAF MSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL CFAVIFIFARFRSQTATN >gi|223713535|gb|ACDM01000063.1| GENE 14 13696 - 14343 628 215 aa, chain + ## HITS:1 COG:fucA KEGG:ns NR:ns ## COG: fucA COG0235 # Protein_GI_number: 16130707 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 215 1 215 215 431 100.0 1e-121 MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDG NGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGG NSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLAQL YLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE >gi|223713535|gb|ACDM01000063.1| GENE 15 14371 - 15519 1284 382 aa, chain + ## HITS:1 COG:ECs3659 KEGG:ns NR:ns ## COG: ECs3659 COG1454 # Protein_GI_number: 15832913 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1 382 2 383 383 745 100.0 0 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLA WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRS LEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADM MDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYR DIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDV CTGGNPREATLEDIVELYHTAW >gi|223713535|gb|ACDM01000063.1| GENE 16 15574 - 16329 517 251 aa, chain - ## HITS:1 COG:exo KEGG:ns NR:ns ## COG: exo COG0258 # Protein_GI_number: 16130705 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Escherichia coli K12 # 1 251 31 281 281 519 99.0 1e-147 MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRH QRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQ ATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVP GVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHI DGNLQQLRLVR >gi|223713535|gb|ACDM01000063.1| GENE 17 16441 - 17808 1371 455 aa, chain - ## HITS:1 COG:sdaB KEGG:ns NR:ns ## COG: sdaB COG1760 # Protein_GI_number: 16130704 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Escherichia coli K12 # 1 455 1 455 455 912 100.0 0 MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGH HTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNL SLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKH CQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRA AALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYY DKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA SPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVC LDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD >gi|223713535|gb|ACDM01000063.1| GENE 18 17866 - 19155 1560 429 aa, chain - ## HITS:1 COG:ECs3656 KEGG:ns NR:ns ## COG: ECs3656 COG0814 # Protein_GI_number: 15832910 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 429 1 429 429 733 100.0 0 METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILA FPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLITLLYFFAIYPILLVYSVAI TNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVGVLMLLA LYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYG DMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPV IAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTT WIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVVMGLIAI SAIFYSLFS >gi|223713535|gb|ACDM01000063.1| GENE 19 19712 - 21076 1434 454 aa, chain - ## HITS:1 COG:ECs3655 KEGG:ns NR:ns ## COG: ECs3655 COG1611 # Protein_GI_number: 15832909 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Escherichia coli O157:H7 # 1 454 1 454 454 931 100.0 0 MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN FDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNL NLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELN ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLD EFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQ MPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDK EIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT >gi|223713535|gb|ACDM01000063.1| GENE 20 21188 - 22036 633 282 aa, chain - ## HITS:1 COG:yqcD_2 KEGG:ns NR:ns ## COG: yqcD_2 COG0780 # Protein_GI_number: 16130701 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Escherichia coli K12 # 138 282 1 145 145 308 100.0 1e-83 MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGLKADNLPFHGTDIWTLY ELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFNNWDEVRQTLERDLS TCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNYEFTTDYLENATCGEKVVEET LVSHLLKSNCLITHQPDWGSLQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDL LRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPSTTRLVRQ >gi|223713535|gb|ACDM01000063.1| GENE 21 22104 - 22649 524 181 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3336 NR:ns ## KEGG: ECO103_3336 # Name: syd # Def: SecY interacting protein Syd # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 181 1 181 181 367 100.0 1e-101 MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQ NVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHL VTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL L >gi|223713535|gb|ACDM01000063.1| GENE 22 23271 - 23600 351 109 aa, chain + ## HITS:1 COG:yqcC KEGG:ns NR:ns ## COG: yqcC COG3098 # Protein_GI_number: 16130699 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 109 1 109 109 176 100.0 9e-45 MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMH DLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS >gi|223713535|gb|ACDM01000063.1| GENE 23 23600 - 24382 192 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 3 219 82 276 287 78 27 8e-14 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL PENERVEFSAPSGQDGEISS >gi|223713535|gb|ACDM01000063.1| GENE 24 24400 - 24849 577 149 aa, chain + ## HITS:1 COG:ECs3650 KEGG:ns NR:ns ## COG: ECs3650 COG0716 # Protein_GI_number: 15832904 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 149 1 149 149 293 100.0 9e-80 MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTG QGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVG EMLLIDASENPEPETESNPWVEQWGTLLS >gi|223713535|gb|ACDM01000063.1| GENE 25 25284 - 26636 1521 450 aa, chain + ## HITS:1 COG:ygcZ KEGG:ns NR:ns ## COG: ygcZ COG0477 # Protein_GI_number: 16130696 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 450 1 450 450 819 100.0 0 MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYV FSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTL RFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWS HVFFFMGGLGIVISFIWLKVIHEPNQHPGVNKKELEYIAAGGALINMDQQNTKVKVPFSV KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVC GFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAF FGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIY VGVHALIAVLSYLVLVGDIKRIELKPVAGQ >gi|223713535|gb|ACDM01000063.1| GENE 26 26638 - 27978 1545 446 aa, chain + ## HITS:1 COG:ygcY KEGG:ns NR:ns ## COG: ygcY COG4948 # Protein_GI_number: 16130695 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 446 1 446 446 907 100.0 0 MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGDVI YQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALL DLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQK AMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWL LDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHA VMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGN PTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGA RNDAGPMQYLIPGWTFDRKRPVFGRH >gi|223713535|gb|ACDM01000063.1| GENE 27 27999 - 29339 1741 446 aa, chain + ## HITS:1 COG:ECs3647 KEGG:ns NR:ns ## COG: ECs3647 COG4948 # Protein_GI_number: 15832901 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli O157:H7 # 1 446 1 446 446 931 100.0 0 MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK IRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAM LDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHE EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW SLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGH TLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPG KITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLG ARDDAMGMQYLIPGWTFDNKRPCMVR >gi|223713535|gb|ACDM01000063.1| GENE 28 29571 - 32327 2509 918 aa, chain - ## HITS:1 COG:ECs3646_1 KEGG:ns NR:ns ## COG: ECs3646_1 COG0642 # Protein_GI_number: 15832900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1 531 1 531 531 1033 100.0 0 MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGM SLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQL TVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFIS SVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGI NSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANM SHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLI LESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNA IKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHG GTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLA YVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLA KAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPV TDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQ MPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL LLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEV RNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELL ELLDEMDNVAREASKILG >gi|223713535|gb|ACDM01000063.1| GENE 29 32384 - 33685 980 433 aa, chain + ## HITS:1 COG:ygcA KEGG:ns NR:ns ## COG: ygcA COG2265 # Protein_GI_number: 16130692 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1 433 1 433 433 877 100.0 0 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT GHLESMVLFSRVK >gi|223713535|gb|ACDM01000063.1| GENE 30 33733 - 35967 2297 744 aa, chain + ## HITS:1 COG:ECs3644 KEGG:ns NR:ns ## COG: ECs3644 COG0317 # Protein_GI_number: 15832898 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Escherichia coli O157:H7 # 1 744 1 744 744 1509 100.0 0 MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGV EMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLK ATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTN IYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEM KAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEG AAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPA GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNL GYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVD ELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGES YSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ VLGRVLGKLNQVPDVIDARRLHGS >gi|223713535|gb|ACDM01000063.1| GENE 31 36045 - 36293 286 82 aa, chain + ## HITS:1 COG:ECs3643 KEGG:ns NR:ns ## COG: ECs3643 COG2336 # Protein_GI_number: 15832897 # Func_class: T Signal transduction mechanisms # Function: Growth regulator # Organism: Escherichia coli O157:H7 # 1 82 1 82 82 148 100.0 2e-36 MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVN DITPENLHENIDWGEPKDKEVW >gi|223713535|gb|ACDM01000063.1| GENE 32 36293 - 36628 223 111 aa, chain + ## HITS:1 COG:ECs3642 KEGG:ns NR:ns ## COG: ECs3642 COG2337 # Protein_GI_number: 15832896 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Escherichia coli O157:H7 # 1 111 1 111 111 230 100.0 4e-61 MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPF EVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG >gi|223713535|gb|ACDM01000063.1| GENE 33 36699 - 37490 1028 263 aa, chain + ## HITS:1 COG:ECs3641 KEGG:ns NR:ns ## COG: ECs3641 COG1694 # Protein_GI_number: 15832895 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 263 1 263 263 478 100.0 1e-135 MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELG DLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKT EERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEA RQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLE MTGVDLETMEEVWQQVKRQEIDL >gi|223713535|gb|ACDM01000063.1| GENE 34 37718 - 39355 1657 545 aa, chain + ## HITS:1 COG:ECs3640 KEGG:ns NR:ns ## COG: ECs3640 COG0504 # Protein_GI_number: 15832894 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Escherichia coli O157:H7 # 1 545 1 545 545 1101 100.0 0 MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEV FVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHIT NAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYM AASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKD VDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIE LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEG MITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWR DENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQ IEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQ KRQAK >gi|223713535|gb|ACDM01000063.1| GENE 35 39443 - 40741 1508 432 aa, chain + ## HITS:1 COG:ECs3639 KEGG:ns NR:ns ## COG: ECs3639 COG0148 # Protein_GI_number: 15832893 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 760 100.0 0 MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFL GKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAK AAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVK EAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKD ITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDG FAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAK DAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKA PYNGRKEIKGQA >gi|223713535|gb|ACDM01000063.1| GENE 36 40801 - 41673 98 290 aa, chain - ## HITS:1 COG:ygcG KEGG:ns NR:ns ## COG: ygcG COG1512 # Protein_GI_number: 16130685 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Escherichia coli K12 # 1 262 24 285 313 489 100.0 1e-138 MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIA VLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDA LAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAI FWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIF MVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW >gi|223713535|gb|ACDM01000063.1| GENE 37 41687 - 41827 179 46 aa, chain - ## HITS:1 COG:no KEGG:ECBD_0952 NR:ns ## KEGG: ECBD_0952 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 46 1 46 46 67 100.0 2e-10 MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI >gi|223713535|gb|ACDM01000063.1| GENE 38 41966 - 42637 220 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] # 5 222 20 224 225 89 30 4e-17 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS GTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTD DKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA >gi|223713535|gb|ACDM01000063.1| GENE 39 44010 - 45488 1417 492 aa, chain - ## HITS:1 COG:ygcE KEGG:ns NR:ns ## COG: ygcE COG1070 # Protein_GI_number: 16130683 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 492 1 492 492 1033 100.0 0 MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFA GHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVA YVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMP GTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGK ALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLL NKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNN YDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGL GLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGEL GNVDSIQSWSNA >gi|223713535|gb|ACDM01000063.1| GENE 40 45515 - 46642 1226 375 aa, chain - ## HITS:1 COG:yqcE KEGG:ns NR:ns ## COG: yqcE COG0477 # Protein_GI_number: 16130682 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 375 51 425 425 656 100.0 0 MSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAI TTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSL KTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVI FGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPT RVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSY IMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQ KIRTADSAPAMASSK >gi|223713535|gb|ACDM01000063.1| GENE 41 47111 - 47896 180 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 16 256 1 238 242 73 26 2e-12 MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEM IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA SPASNYVNGHLLVVDGGYLVR >gi|223713535|gb|ACDM01000063.1| GENE 42 47966 - 49420 1434 484 aa, chain + ## HITS:1 COG:ECs3629 KEGG:ns NR:ns ## COG: ECs3629 COG0277 # Protein_GI_number: 15832883 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli O157:H7 # 1 484 1 484 484 1009 99.0 0 MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA VLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEG IAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY PIEK >gi|223713535|gb|ACDM01000063.1| GENE 43 49514 - 50851 1119 445 aa, chain + ## HITS:1 COG:ygcS KEGG:ns NR:ns ## COG: ygcS COG0477 # Protein_GI_number: 16130678 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 445 25 469 469 744 99.0 0 MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIG GSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHFIGLRILIGIG LGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLAS AALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTL FSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLG LVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPA ESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLW APETKALPLVAAGNVGGANEHSVSV >gi|223713535|gb|ACDM01000063.1| GENE 44 50829 - 51608 721 259 aa, chain + ## HITS:1 COG:ygcR KEGG:ns NR:ns ## COG: ygcR COG2086 # Protein_GI_number: 16130677 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli K12 # 1 259 3 261 261 466 100.0 1e-131 MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTP MSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLI ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAV IAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT VAEKAQKLWQDYLRQRMQP >gi|223713535|gb|ACDM01000063.1| GENE 45 51605 - 52465 711 286 aa, chain + ## HITS:1 COG:ygcQ KEGG:ns NR:ns ## COG: ygcQ COG2025 # Protein_GI_number: 16130676 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1 286 12 297 297 538 100.0 1e-153 MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVV LFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLS LARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEA DNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ >gi|223713535|gb|ACDM01000063.1| GENE 46 52613 - 53188 564 191 aa, chain - ## HITS:1 COG:ygcP KEGG:ns NR:ns ## COG: ygcP COG1954 # Protein_GI_number: 16130675 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Escherichia coli K12 # 1 191 1 191 191 377 100.0 1e-105 MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIH VDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNID KQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTN TGVWTLAKKLL >gi|223713535|gb|ACDM01000063.1| GENE 47 53205 - 53465 214 86 aa, chain - ## HITS:1 COG:ygcO KEGG:ns NR:ns ## COG: ygcO COG2440 # Protein_GI_number: 16130674 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli K12 # 1 86 13 98 98 177 100.0 6e-45 MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTC RLLCDESTLQQWRYPPSGFGITYRFG >gi|223713535|gb|ACDM01000063.1| GENE 48 53456 - 54727 735 423 aa, chain - ## HITS:1 COG:ygcN KEGG:ns NR:ns ## COG: ygcN COG0644 # Protein_GI_number: 16130673 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 423 11 433 433 832 99.0 0 MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQ FHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECI PGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVARPAGEAMALGIK EVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ SRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALR SCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQH VPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSL RCL >gi|223713535|gb|ACDM01000063.1| GENE 49 54805 - 55167 417 120 aa, chain - ## HITS:1 COG:ECs3620 KEGG:ns NR:ns ## COG: ECs3620 COG0720 # Protein_GI_number: 15832874 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Escherichia coli O157:H7 # 1 120 2 121 121 251 100.0 2e-67 MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAA FKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE >gi|223713535|gb|ACDM01000063.1| GENE 50 55486 - 57285 1767 599 aa, chain + ## HITS:1 COG:cysJ KEGG:ns NR:ns ## COG: cysJ COG0369 # Protein_GI_number: 16130671 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Escherichia coli K12 # 1 599 1 599 599 1155 99.0 0 MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVAS LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDE PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI VDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGG ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY >gi|223713535|gb|ACDM01000063.1| GENE 51 57285 - 58997 1878 570 aa, chain + ## HITS:1 COG:ECs3618 KEGG:ns NR:ns ## COG: ECs3618 COG0155 # Protein_GI_number: 15832872 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Escherichia coli O157:H7 # 1 570 1 570 570 1183 99.0 0 MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQ DDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTF QFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEH LLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAI AENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRT DRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTL FIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGL MNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCP NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAK EREAGEGFGDFTVRAGIIRPVLDPARDLWD >gi|223713535|gb|ACDM01000063.1| GENE 52 59071 - 59805 855 244 aa, chain + ## HITS:1 COG:cysH KEGG:ns NR:ns ## COG: cysH COG0175 # Protein_GI_number: 16130669 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli K12 # 1 244 1 244 244 491 99.0 1e-139 MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAV SLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKL WEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVL PIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECG LHEG >gi|223713535|gb|ACDM01000063.1| GENE 53 60070 - 60222 134 50 aa, chain + ## HITS:1 COG:no KEGG:G2583_3410 NR:ns ## KEGG: G2583_3410 # Name: small # Def: small toxic membrane polypeptide # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 50 46 95 95 91 98.0 1e-17 MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK Prediction of potential genes in microbial genomes Time: Mon May 16 19:13:53 2011 Seq name: gi|223713534|gb|ACDM01000064.1| Escherichia sp. 4_1_40B cont1.64, whole genome shotgun sequence Length of sequence - 59650 bp Number of predicted genes - 59, with homology - 59 Number of transcription units - 21, operones - 11 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 436 - 1473 543 ## COG2234 Predicted aminopeptidases - Prom 1507 - 1566 3.9 + Prom 1488 - 1547 4.2 2 2 Op 1 18/0.000 + CDS 1725 - 2633 1076 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 3 2 Op 2 7/0.000 + CDS 2635 - 4062 1662 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 4 2 Op 3 . + CDS 4062 - 4667 567 ## COG0529 Adenylylsulfate kinase and related kinases 5 2 Op 4 . + CDS 4717 - 5040 497 ## EcSMS35_2875 hypothetical protein + Prom 5049 - 5108 3.4 6 3 Op 1 11/0.000 + CDS 5234 - 5545 255 ## COG2919 Septum formation initiator 7 3 Op 2 19/0.000 + CDS 5564 - 6274 315 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 8 3 Op 3 8/0.000 + CDS 6274 - 6753 834 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 9 3 Op 4 8/0.000 + CDS 6750 - 7799 1071 ## COG0585 Uncharacterized conserved protein 10 3 Op 5 13/0.000 + CDS 7780 - 8541 671 ## COG0496 Predicted acid phosphatase 11 3 Op 6 11/0.000 + CDS 8535 - 9161 541 ## COG2518 Protein-L-isoaspartate carboxylmethyltransferase + Term 9213 - 9271 -0.7 + Prom 9212 - 9271 2.1 12 3 Op 7 8/0.000 + CDS 9301 - 10440 692 ## COG0739 Membrane proteins related to metalloendopeptidases 13 3 Op 8 . + CDS 10503 - 11495 1099 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 11514 - 11549 6.5 - Term 11545 - 11576 3.4 14 4 Op 1 1/0.900 - CDS 11589 - 12953 1198 ## COG2610 H+/gluconate symporter and related permeases 15 4 Op 2 4/0.400 - CDS 13042 - 13818 730 ## COG3622 Hydroxypyruvate isomerase 16 4 Op 3 6/0.000 - CDS 13823 - 14461 480 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 17 4 Op 4 5/0.000 - CDS 14458 - 15720 1041 ## COG3395 Uncharacterized protein conserved in bacteria 18 4 Op 5 . - CDS 15717 - 16625 912 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Prom 16707 - 16766 4.9 + Prom 16611 - 16670 5.8 19 5 Tu 1 . + CDS 16821 - 17588 584 ## COG1349 Transcriptional regulators of sugar metabolism + Term 17610 - 17652 4.5 - Term 17578 - 17626 -0.9 20 6 Tu 1 . - CDS 17639 - 18295 403 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 18317 - 18376 8.2 21 7 Tu 1 . - CDS 18401 - 20962 3121 ## COG0249 Mismatch repair ATPase (MutS family) + Prom 21155 - 21214 7.4 22 8 Tu 1 . + CDS 21249 - 21602 335 ## B21_02547 hypothetical protein + Term 21605 - 21642 7.8 - Term 21591 - 21630 7.4 23 9 Op 1 3/0.500 - CDS 21639 - 23717 2314 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains - Term 23723 - 23751 3.0 24 9 Op 2 4/0.400 - CDS 23791 - 24801 1175 ## COG0309 Hydrogenase maturation factor 25 9 Op 3 13/0.000 - CDS 24798 - 25919 1034 ## COG0409 Hydrogenase maturation factor 26 9 Op 4 8/0.000 - CDS 25919 - 26191 341 ## COG0298 Hydrogenase maturation factor 27 9 Op 5 11/0.000 - CDS 26182 - 27054 838 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 28 9 Op 6 . - CDS 27058 - 27408 175 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) - Prom 27550 - 27609 3.9 + Prom 27509 - 27568 4.6 29 10 Tu 1 . + CDS 27620 - 28081 404 ## ECO103_3263 formate hydrogenlyase regulatory protein HycA + Term 28130 - 28180 10.1 30 11 Op 1 4/0.400 + CDS 28206 - 28817 322 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 31 11 Op 2 10/0.000 + CDS 28814 - 30640 2109 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 32 11 Op 3 7/0.000 + CDS 30643 - 31566 1387 ## COG0650 Formate hydrogenlyase subunit 4 33 11 Op 4 5/0.000 + CDS 31584 - 33293 2302 ## COG3261 Ni,Fe-hydrogenase III large subunit 34 11 Op 5 6/0.000 + CDS 33303 - 33845 538 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 35 11 Op 6 . + CDS 33845 - 34612 896 ## COG3260 Ni,Fe-hydrogenase III small subunit 36 11 Op 7 . + CDS 34609 - 35019 471 ## B21_02533 hypothetical protein 37 11 Op 8 . + CDS 35012 - 35482 640 ## COG0680 Ni,Fe-hydrogenase maturation factor + Term 35554 - 35591 3.5 - Term 35540 - 35578 5.1 38 12 Op 1 8/0.000 - CDS 35641 - 37065 1540 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 39 12 Op 2 . - CDS 37074 - 38531 1790 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 38781 - 38840 2.8 + Prom 38621 - 38680 5.9 40 13 Tu 1 . + CDS 38791 - 39801 927 ## COG1609 Transcriptional regulators + Term 39816 - 39855 3.0 + Prom 39853 - 39912 4.5 41 14 Op 1 . + CDS 39950 - 40477 461 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 42 14 Op 2 . + CDS 40630 - 42882 1717 ## COG0068 Hydrogenase maturation factor + Term 42957 - 43001 4.1 43 15 Op 1 5/0.000 - CDS 43010 - 44143 945 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 44 15 Op 2 . - CDS 44140 - 45579 1299 ## COG0426 Uncharacterized flavoproteins - Prom 45670 - 45729 6.5 + Prom 45627 - 45686 7.4 45 16 Tu 1 . + CDS 45766 - 47280 1356 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains + Term 47306 - 47344 2.0 46 17 Op 1 . - CDS 47277 - 48242 1178 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 47 17 Op 2 4/0.400 - CDS 48235 - 49008 782 ## COG1349 Transcriptional regulators of sugar metabolism 48 17 Op 3 5/0.000 - CDS 49075 - 49434 324 ## COG4578 Glucitol operon activator - Prom 49471 - 49530 2.3 49 17 Op 4 5/0.000 - CDS 49539 - 50318 856 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 50 17 Op 5 6/0.000 - CDS 50322 - 50693 275 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 51 17 Op 6 6/0.000 - CDS 50704 - 51663 1061 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 52 17 Op 7 . - CDS 51660 - 52223 671 ## COG3730 Phosphotransferase system sorbitol-specific component IIC - Prom 52347 - 52406 6.0 + Prom 52286 - 52345 4.8 53 18 Tu 1 . + CDS 52479 - 53564 1055 ## COG2951 Membrane-bound lytic murein transglycosylase B + Prom 53582 - 53641 2.6 54 19 Op 1 12/0.000 + CDS 53709 - 54206 301 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 55 19 Op 2 14/0.000 + CDS 54286 - 55347 1509 ## COG0468 RecA/RadA recombinase + Term 55365 - 55403 1.0 56 19 Op 3 . + CDS 55416 - 55916 562 ## COG2137 Uncharacterized protein conserved in bacteria + Term 55973 - 56026 12.0 57 20 Tu 1 . - CDS 55957 - 56139 143 ## ECSP_3645 hypothetical protein - Prom 56295 - 56354 1.9 58 21 Op 1 8/0.000 + CDS 56044 - 58674 3071 ## COG0013 Alanyl-tRNA synthetase + Prom 58722 - 58781 4.1 59 21 Op 2 . + CDS 58909 - 59094 204 ## PROTEIN SUPPORTED gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1 + TRNA 59410 - 59502 72.5 # Ser GCT 0 0 + TRNA 59506 - 59582 87.2 # Arg ACG 0 0 Predicted protein(s) >gi|223713534|gb|ACDM01000064.1| GENE 1 436 - 1473 543 345 aa, chain - ## HITS:1 COG:ECs3607 KEGG:ns NR:ns ## COG: ECs3607 COG2234 # Protein_GI_number: 15832861 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Escherichia coli O157:H7 # 1 345 1 345 345 696 99.0 0 MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADY IRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDT YAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKL GAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHG IAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPA GNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS >gi|223713534|gb|ACDM01000064.1| GENE 2 1725 - 2633 1076 302 aa, chain + ## HITS:1 COG:cysD KEGG:ns NR:ns ## COG: cysD COG0175 # Protein_GI_number: 16130659 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli K12 # 1 302 1 302 302 626 100.0 1e-179 MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPL LHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLK QALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGES IRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIK KRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQG YF >gi|223713534|gb|ACDM01000064.1| GENE 3 2635 - 4062 1662 475 aa, chain + ## HITS:1 COG:cysN KEGG:ns NR:ns ## COG: cysN COG2895 # Protein_GI_number: 16130658 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Escherichia coli K12 # 1 475 1 475 475 943 99.0 0 MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLS SLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQY TRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTF TRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRV VDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDRE EAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIA GKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIF IDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK >gi|223713534|gb|ACDM01000064.1| GENE 4 4062 - 4667 567 201 aa, chain + ## HITS:1 COG:ECs3604 KEGG:ns NR:ns ## COG: ECs3604 COG0529 # Protein_GI_number: 15832858 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Escherichia coli O157:H7 # 1 201 1 201 201 395 99.0 1e-110 MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTY LLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRE RVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRYFTGIDSVYEAPESAEIHLNGEQ LVTNLVQQLLDLLRQNDIIRS >gi|223713534|gb|ACDM01000064.1| GENE 5 4717 - 5040 497 107 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_2875 NR:ns ## KEGG: EcSMS35_2875 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 107 1 107 107 176 100.0 2e-43 MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPF FLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG >gi|223713534|gb|ACDM01000064.1| GENE 6 5234 - 5545 255 103 aa, chain + ## HITS:1 COG:ECs3602 KEGG:ns NR:ns ## COG: ECs3602 COG2919 # Protein_GI_number: 15832856 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Escherichia coli O157:H7 # 16 103 16 103 103 164 100.0 4e-41 MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDL NGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR >gi|223713534|gb|ACDM01000064.1| GENE 7 5564 - 6274 315 236 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 10 227 6 223 234 125 37 4e-28 MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISP GDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTR ALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT >gi|223713534|gb|ACDM01000064.1| GENE 8 6274 - 6753 834 159 aa, chain + ## HITS:1 COG:ECs3600 KEGG:ns NR:ns ## COG: ECs3600 COG0245 # Protein_GI_number: 15832854 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 288 100.0 3e-78 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK >gi|223713534|gb|ACDM01000064.1| GENE 9 6750 - 7799 1071 349 aa, chain + ## HITS:1 COG:ygbO KEGG:ns NR:ns ## COG: ygbO COG0585 # Protein_GI_number: 16130652 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 349 1 349 349 692 99.0 0 MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK LRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQ TNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA MLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE >gi|223713534|gb|ACDM01000064.1| GENE 10 7780 - 8541 671 253 aa, chain + ## HITS:1 COG:ECs3598 KEGG:ns NR:ns ## COG: ECs3598 COG0496 # Protein_GI_number: 15832852 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Escherichia coli O157:H7 # 1 253 1 253 253 505 100.0 1e-143 MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGD IAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPA LAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRH PADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVV SDWLNSVGVGTQW >gi|223713534|gb|ACDM01000064.1| GENE 11 8535 - 9161 541 208 aa, chain + ## HITS:1 COG:ECs3597 KEGG:ns NR:ns ## COG: ECs3597 COG2518 # Protein_GI_number: 15832851 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-L-isoaspartate carboxylmethyltransferase # Organism: Escherichia coli O157:H7 # 1 208 1 208 208 397 100.0 1e-111 MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQ PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL DLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLK RVRRRGGEFIIDTVEAVRFVPLVKGELA >gi|223713534|gb|ACDM01000064.1| GENE 12 9301 - 10440 692 379 aa, chain + ## HITS:1 COG:ECs3596 KEGG:ns NR:ns ## COG: ECs3596 COG0739 # Protein_GI_number: 15832850 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli O157:H7 # 1 379 1 379 379 553 99.0 1e-157 MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMG TTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSG STYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAIT QADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPT ASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRV VYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLH FEIRYKGKSVNPLRYLPQR >gi|223713534|gb|ACDM01000064.1| GENE 13 10503 - 11495 1099 330 aa, chain + ## HITS:1 COG:ECs3595 KEGG:ns NR:ns ## COG: ECs3595 COG0568 # Protein_GI_number: 15832849 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1 330 1 330 330 576 100.0 1e-164 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQL YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE RVRQIQVEGLRRLREILQTQGLNIEALFRE >gi|223713534|gb|ACDM01000064.1| GENE 14 11589 - 12953 1198 454 aa, chain - ## HITS:1 COG:ygbN KEGG:ns NR:ns ## COG: ygbN COG2610 # Protein_GI_number: 16130647 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1 454 1 454 454 687 99.0 0 MSTITLLCIALTGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGG VLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDV GFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTI IGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALV TSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSL QHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISL ALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKY LGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI >gi|223713534|gb|ACDM01000064.1| GENE 15 13042 - 13818 730 258 aa, chain - ## HITS:1 COG:ygbM KEGG:ns NR:ns ## COG: ygbM COG3622 # Protein_GI_number: 16130646 # Func_class: G Carbohydrate transport and metabolism # Function: Hydroxypyruvate isomerase # Organism: Escherichia coli K12 # 1 258 1 258 258 528 99.0 1e-150 MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFN TAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRA VFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTF HAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCE YKPRGLTEEGLGWFDAWR >gi|223713534|gb|ACDM01000064.1| GENE 16 13823 - 14461 480 212 aa, chain - ## HITS:1 COG:ygbL KEGG:ns NR:ns ## COG: ygbL COG0235 # Protein_GI_number: 16130645 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 212 1 212 212 432 100.0 1e-121 MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQR LSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIR PFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFLLANHGPVVCGESLQEAANN MEELEETAKLIFILGDRPIRYLTAGEIAELRS >gi|223713534|gb|ACDM01000064.1| GENE 17 14458 - 15720 1041 420 aa, chain - ## HITS:1 COG:ygbK KEGG:ns NR:ns ## COG: ygbK COG3395 # Protein_GI_number: 16130644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 385 1 385 388 741 99.0 0 MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAIDALVISLKTRSCPVVEA TQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDALMDALDTPFTVFSPALPVN GRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEAQSTGRCGVVSAHVFEQGVDA VRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPLVTGGSGLAIGLARQWAQENGNQ ARKAGRPLAGRGVVLSGSCSQMTNRQVAHYRQIAPAREVDVARCLSIETLAAYAHELAEW VLGQESVLAPLVFATASTDALAAIQQQYGAQKASQAVETLFSQLAARLAAEGVTRFIVAG GETSGVVTQSLGIKGFHIGPTISPGVPWVNALDKPVSLALKSGNFGDDAFFSRAQREFLS >gi|223713534|gb|ACDM01000064.1| GENE 18 15717 - 16625 912 302 aa, chain - ## HITS:1 COG:ygbJ KEGG:ns NR:ns ## COG: ygbJ COG2084 # Protein_GI_number: 16130643 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1 302 1 302 302 493 99.0 1e-139 MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACATLKEAGACGVSDNAATF AEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDL EMLDAPVSGGAVKAANGEMTIMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKII HQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSA VDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGA KS >gi|223713534|gb|ACDM01000064.1| GENE 19 16821 - 17588 584 255 aa, chain + ## HITS:1 COG:ygbI KEGG:ns NR:ns ## COG: ygbI COG1349 # Protein_GI_number: 16130642 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 255 11 265 265 464 99.0 1e-130 MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPG RVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV TNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRG ISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR ALVKQDLSLLVAKNE >gi|223713534|gb|ACDM01000064.1| GENE 20 17639 - 18295 403 218 aa, chain - ## HITS:1 COG:pphB KEGG:ns NR:ns ## COG: pphB COG0639 # Protein_GI_number: 16130641 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1 218 1 218 218 441 99.0 1e-124 MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPEIDLLISVGDNIDRGPESL DVLRLLNQPWFTSVKGNHEAMALEAFETGDGNMWLASGGDWFFDLNDSEQQEAIDLLLKF HHLPHIIEITNDNIKYAIAHADYPGSEYLFGKEIAESELLWPVDRVQKSLNGELQQINGA DYFIFGHMMFDNIQTFANQIYIDTGSPNSGRLSFYKIK >gi|223713534|gb|ACDM01000064.1| GENE 21 18401 - 20962 3121 853 aa, chain - ## HITS:1 COG:mutS KEGG:ns NR:ns ## COG: mutS COG0249 # Protein_GI_number: 16130640 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Escherichia coli K12 # 1 853 1 853 853 1616 100.0 0 MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGA SAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTIS DEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLY AEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCL LQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVT PMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTA RPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVR DGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRG QSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLE ALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANP LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAA DDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK ALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAG VPKEVIKRARQKLRELESISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPR QALEWIYRLKSLV >gi|223713534|gb|ACDM01000064.1| GENE 22 21249 - 21602 335 117 aa, chain + ## HITS:1 COG:no KEGG:B21_02547 NR:ns ## KEGG: B21_02547 # Name: ygbA # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 117 1 117 117 199 100.0 2e-50 MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQC PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE >gi|223713534|gb|ACDM01000064.1| GENE 23 21639 - 23717 2314 692 aa, chain - ## HITS:1 COG:fhlA KEGG:ns NR:ns ## COG: fhlA COG3604 # Protein_GI_number: 16130638 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 1 692 1 692 692 1377 100.0 0 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI >gi|223713534|gb|ACDM01000064.1| GENE 24 23791 - 24801 1175 336 aa, chain - ## HITS:1 COG:hypE KEGG:ns NR:ns ## COG: hypE COG0309 # Protein_GI_number: 16130637 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 15 336 1 322 322 610 100.0 1e-174 MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSY VIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKAVVTSMAETA RAAGIAIVTGDTKVVQRGAVDKLFINTAGMGAIPANIHWGAQTLTAGDVLLVSGTLGDHG ATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGC GIELSEAALPVKPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDA ALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC >gi|223713534|gb|ACDM01000064.1| GENE 25 24798 - 25919 1034 373 aa, chain - ## HITS:1 COG:hypD KEGG:ns NR:ns ## COG: hypD COG0409 # Protein_GI_number: 16130636 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 1 373 1 373 373 779 100.0 0 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC AAWYQYRQQESEA >gi|223713534|gb|ACDM01000064.1| GENE 26 25919 - 26191 341 90 aa, chain - ## HITS:1 COG:ECs3584 KEGG:ns NR:ns ## COG: ECs3584 COG0298 # Protein_GI_number: 15832838 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 174 100.0 3e-44 MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVIN EAEARDTLDALQNMFDVEPDVGALLYGEEK >gi|223713534|gb|ACDM01000064.1| GENE 27 26182 - 27054 838 290 aa, chain - ## HITS:1 COG:hypB KEGG:ns NR:ns ## COG: hypB COG0378 # Protein_GI_number: 16130634 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Escherichia coli K12 # 1 290 1 290 290 597 100.0 1e-171 MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTPSQTEEGDLHY GHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTL LTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL PLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKV DLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA >gi|223713534|gb|ACDM01000064.1| GENE 28 27058 - 27408 175 116 aa, chain - ## HITS:1 COG:ECs3582 KEGG:ns NR:ns ## COG: ECs3582 COG0375 # Protein_GI_number: 15832836 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Escherichia coli O157:H7 # 1 116 1 116 116 202 100.0 1e-52 MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFDLVCRGSVAEGC KLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVADDGLQIRRIEIDQE >gi|223713534|gb|ACDM01000064.1| GENE 29 27620 - 28081 404 153 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3263 NR:ns ## KEGG: ECO103_3263 # Name: hycA # Def: formate hydrogenlyase regulatory protein HycA # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 153 1 153 153 309 100.0 2e-83 MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFE HFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYL EKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA >gi|223713534|gb|ACDM01000064.1| GENE 30 28206 - 28817 322 203 aa, chain + ## HITS:1 COG:hycB KEGG:ns NR:ns ## COG: hycB COG1142 # Protein_GI_number: 16130631 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1 203 1 203 203 360 100.0 1e-99 MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCA VVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAP PAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKALHLVDNTDIARVSKRKR ELTFNTDFGDLTLFQQAQSGEAK >gi|223713534|gb|ACDM01000064.1| GENE 31 28814 - 30640 2109 608 aa, chain + ## HITS:1 COG:hycC KEGG:ns NR:ns ## COG: hycC COG0651 # Protein_GI_number: 16130630 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Escherichia coli K12 # 1 608 1 608 608 997 100.0 0 MSAISLINSGVAWFVAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGV SGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVC AVIASNLGMFVVMAEIMALCAVFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLD LRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKI GLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYHTLENIGIIL LGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGG IGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGL AITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAICCVIGGVAAPWLL PMLSAAVPLPLEPANTTVSQPMITLLLIACPLLPFIIMAICKGDRLPSRSRGAAWVCGYD HEKSMVITAHGFAMPVKQAFAPVLKLRKWLNPVSLVPGWQCEGSALLFRRMALVELAVLV VIIVSRGA >gi|223713534|gb|ACDM01000064.1| GENE 32 30643 - 31566 1387 307 aa, chain + ## HITS:1 COG:hycD KEGG:ns NR:ns ## COG: hycD COG0650 # Protein_GI_number: 16130629 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 4 # Organism: Escherichia coli K12 # 1 307 1 307 307 535 100.0 1e-152 MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDAS GWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGS PFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALC ACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFI PWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLA FVSLLAA >gi|223713534|gb|ACDM01000064.1| GENE 33 31584 - 33293 2302 569 aa, chain + ## HITS:1 COG:ECs3577_2 KEGG:ns NR:ns ## COG: ECs3577_2 COG3261 # Protein_GI_number: 15832831 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III large subunit # Organism: Escherichia coli O157:H7 # 158 569 1 412 412 872 100.0 0 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV VDVRKKKSKVVPYKELERYSIERKNSPLK >gi|223713534|gb|ACDM01000064.1| GENE 34 33303 - 33845 538 180 aa, chain + ## HITS:1 COG:hycF KEGG:ns NR:ns ## COG: hycF COG1143 # Protein_GI_number: 16130627 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Escherichia coli K12 # 1 180 1 180 180 348 100.0 4e-96 MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETD LATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVC NRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKRQKCLVPSDRIELTRHMKEAI >gi|223713534|gb|ACDM01000064.1| GENE 35 33845 - 34612 896 255 aa, chain + ## HITS:1 COG:hycG KEGG:ns NR:ns ## COG: hycG COG3260 # Protein_GI_number: 16130626 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III small subunit # Organism: Escherichia coli K12 # 1 255 1 255 255 530 100.0 1e-151 MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE IVSHLNHVVEEARIR >gi|223713534|gb|ACDM01000064.1| GENE 36 34609 - 35019 471 136 aa, chain + ## HITS:1 COG:no KEGG:B21_02533 NR:ns ## KEGG: B21_02533 # Name: hycH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 136 1 136 136 270 100.0 1e-71 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD IHQENAIYLMVRRLRD >gi|223713534|gb|ACDM01000064.1| GENE 37 35012 - 35482 640 156 aa, chain + ## HITS:1 COG:ECs3573 KEGG:ns NR:ns ## COG: ECs3573 COG0680 # Protein_GI_number: 15832827 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 305 100.0 2e-83 MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLI VDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGF YYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE >gi|223713534|gb|ACDM01000064.1| GENE 38 35641 - 37065 1540 474 aa, chain - ## HITS:1 COG:ascB KEGG:ns NR:ns ## COG: ascB COG2723 # Protein_GI_number: 16130623 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1 474 1 474 474 1002 100.0 0 MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEF YPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEE CKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYARTCFEAFDGLVKYWLTFNE INIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQVGCMLAGG NFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILK NTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMM YDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWG CIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE >gi|223713534|gb|ACDM01000064.1| GENE 39 37074 - 38531 1790 485 aa, chain - ## HITS:1 COG:ECs3571_2 KEGG:ns NR:ns ## COG: ECs3571_2 COG1263 # Protein_GI_number: 15832825 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 91 485 2 396 396 645 98.0 0 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSD NQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPA IIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMSLA IAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDS ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGAL WPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQT ALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFT SVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAQARKYQSVQPTVAK EVSLN >gi|223713534|gb|ACDM01000064.1| GENE 40 38791 - 39801 927 336 aa, chain + ## HITS:1 COG:ascG KEGG:ns NR:ns ## COG: ascG COG1609 # Protein_GI_number: 16130621 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 336 2 337 337 664 100.0 0 MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQ TLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDA IMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAK FSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQ EIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAPSR >gi|223713534|gb|ACDM01000064.1| GENE 41 39950 - 40477 461 175 aa, chain + ## HITS:1 COG:ECs3569 KEGG:ns NR:ns ## COG: ECs3569 COG1142 # Protein_GI_number: 15832823 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli O157:H7 # 1 175 1 175 175 302 100.0 2e-82 MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQ CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLN VRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQLSAEKRRRTALMF >gi|223713534|gb|ACDM01000064.1| GENE 42 40630 - 42882 1717 750 aa, chain + ## HITS:1 COG:hypF KEGG:ns NR:ns ## COG: hypF COG0068 # Protein_GI_number: 16130619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 1 750 1 750 750 1453 99.0 0 MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPETFLVQ LYQHCPPLARIDSVEREPFIWSQLPTEFTIRQSTGGTMNTQIVPDAATCPACLAEMNTPG ERRYRYPFINCTHCGPRFTIIRAMPYDRLFTVMAAFPLCPACDKEYRDPLDRRFHAQPVA CPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLR ARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVM LPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDIVQRMD DSVVRESGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQAVLSQHLG DLSDDGIQMQWREALRLMQNIYDFTPQYVVHDAHPGYVSSQWAREMNLPTQTVLHHHAHA AACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECEHLGGLPAVALPGGD LAAKQPWRNLLAQCLRFVPEWQNYSETASVQQQNWSVLARAIERGINAPLASSCGRFFDA VAAALGCAPATLSYEGEAACALEALAASCHGVTHPVTMPRVDNQLDLATFWQQWLNWQAP VNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFP QSLPAGDGGLSLGQGVIAAARWLAGEVQNG >gi|223713534|gb|ACDM01000064.1| GENE 43 43010 - 44143 945 377 aa, chain - ## HITS:1 COG:ygbD KEGG:ns NR:ns ## COG: ygbD COG0446 # Protein_GI_number: 16130618 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 377 1 377 377 718 98.0 0 MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSIDEYNKPDLSHVISQGQRADDLT RQTAGEFAEQFNLRLFPHTWVTDIDAEAHVVKSQNNQWQYDKLVLATGASAFVPPVPGRE LMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGILATLDRQRSIEVDAVIAATGLRPE TALARRAGLTINRGVCVDSYLQTSNTDIYALGDCAEINGQVLPFLQPIQLSAMVLAKNLL GNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLRWQINTERQGMVARGVDDADQLRAFVV SEDRMKEAFGLLKTLPM >gi|223713534|gb|ACDM01000064.1| GENE 44 44140 - 45579 1299 479 aa, chain - ## HITS:1 COG:ygaK_1 KEGG:ns NR:ns ## COG: ygaK_1 COG0426 # Protein_GI_number: 16130617 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Escherichia coli K12 # 1 394 1 394 394 828 99.0 0 MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFV QNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWN FNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFND EVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVE LYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILT NVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRL QDAGFEMSLSLKAKWRPDQDALELCREHGREIARQWALAPLPQSTVNTVVKEETSAATTA DLGPRMQCSVCRWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFDELASEAK >gi|223713534|gb|ACDM01000064.1| GENE 45 45766 - 47280 1356 504 aa, chain + ## HITS:1 COG:ygaA KEGG:ns NR:ns ## COG: ygaA COG3604 # Protein_GI_number: 16130616 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 1 504 26 529 529 946 100.0 0 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA ACARMLETDVANLHRLAKRLGLKD >gi|223713534|gb|ACDM01000064.1| GENE 46 47277 - 48242 1178 321 aa, chain - ## HITS:1 COG:gutQ_1 KEGG:ns NR:ns ## COG: gutQ_1 COG0794 # Protein_GI_number: 16130615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 14 205 1 192 192 363 100.0 1e-100 MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKI AATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALL AMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEE DFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ QVQGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTLQSQSRAIDAKEILMKRKITAAPVV DENGKLTGAINLQDFYQAGII >gi|223713534|gb|ACDM01000064.1| GENE 47 48235 - 49008 782 257 aa, chain - ## HITS:1 COG:srlR KEGG:ns NR:ns ## COG: srlR COG1349 # Protein_GI_number: 16130614 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 257 1 257 257 504 100.0 1e-143 MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNK EESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMT NSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNA GVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQ ALEEKGIDVIITGESNE >gi|223713534|gb|ACDM01000064.1| GENE 48 49075 - 49434 324 119 aa, chain - ## HITS:1 COG:gutM KEGG:ns NR:ns ## COG: gutM COG4578 # Protein_GI_number: 16130613 # Func_class: K Transcription # Function: Glucitol operon activator # Organism: Escherichia coli K12 # 1 119 1 119 119 231 100.0 2e-61 MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVAIALD DQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPHDPLSQNALSLALKLKRG >gi|223713534|gb|ACDM01000064.1| GENE 49 49539 - 50318 856 259 aa, chain - ## HITS:1 COG:srlD KEGG:ns NR:ns ## COG: srlD COG1028 # Protein_GI_number: 16130612 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 259 1 259 259 493 100.0 1e-139 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGA DATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCA REFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVH SLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQDVLNMLLFYASP KASYCTGQSINVTGGQVMF >gi|223713534|gb|ACDM01000064.1| GENE 50 50322 - 50693 275 123 aa, chain - ## HITS:1 COG:srlB KEGG:ns NR:ns ## COG: srlB COG3731 # Protein_GI_number: 16130611 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Escherichia coli K12 # 1 123 1 123 123 248 100.0 2e-66 MTVIYQTTITRIGASAIDALSDQMLITFREGAPADLEEYCFIHCHGELKGALHPGLQFSL GQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHVAGPVPDDIAPGSVLKFES VKE >gi|223713534|gb|ACDM01000064.1| GENE 51 50704 - 51663 1061 319 aa, chain - ## HITS:1 COG:srlE KEGG:ns NR:ns ## COG: srlE COG3732 # Protein_GI_number: 16130610 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Escherichia coli K12 # 1 319 1 319 319 592 99.0 1e-169 MTHIRIEKGTGGWGGPLELKATPGKKIVYITAGTRPAIVDKLAQLTGWQAIDGFKEGEPA EAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQYIVEDIYVSGVKEENITVV GDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSTVAVLFQSGRDTIDTVLKTILPF MAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLALICSFPLLSPFLGPGAVIAQVI GVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPSVLVSRF LTGAPTVLIAWFVSGFIYQ >gi|223713534|gb|ACDM01000064.1| GENE 52 51660 - 52223 671 187 aa, chain - ## HITS:1 COG:srlA KEGG:ns NR:ns ## COG: srlA COG3730 # Protein_GI_number: 16130609 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Escherichia coli K12 # 1 187 1 187 187 364 99.0 1e-101 MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPG ELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV HLAGATS >gi|223713534|gb|ACDM01000064.1| GENE 53 52479 - 53564 1055 361 aa, chain + ## HITS:1 COG:mltB KEGG:ns NR:ns ## COG: mltB COG2951 # Protein_GI_number: 16130608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase B # Organism: Escherichia coli K12 # 1 361 1 361 361 714 99.0 0 MFKRRYVTLLPLFVLLAACSSKPKPTETDTTTGTPSGGFLLEPQHNVMQMGGDFANNPNA QQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKK FITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALAT LSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSG DGHINLWDPVDAIGSVANYFKAHGWVKGDPVAVMANGQAPGLPNGFKTKYSISQLAAAGL TPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARV Q >gi|223713534|gb|ACDM01000064.1| GENE 54 53709 - 54206 301 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 8 157 748 898 904 120 46 2e-26 MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTV WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT >gi|223713534|gb|ACDM01000064.1| GENE 55 54286 - 55347 1509 353 aa, chain + ## HITS:1 COG:ECs3556 KEGG:ns NR:ns ## COG: ECs3556 COG0468 # Protein_GI_number: 15832810 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Escherichia coli O157:H7 # 1 353 1 353 353 666 100.0 0 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF >gi|223713534|gb|ACDM01000064.1| GENE 56 55416 - 55916 562 166 aa, chain + ## HITS:1 COG:oraA KEGG:ns NR:ns ## COG: oraA COG2137 # Protein_GI_number: 16130605 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 166 1 166 166 310 100.0 6e-85 MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVI AWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCAL ARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD >gi|223713534|gb|ACDM01000064.1| GENE 57 55957 - 56139 143 60 aa, chain - ## HITS:1 COG:no KEGG:ECSP_3645 NR:ns ## KEGG: ECSP_3645 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 60 74 133 133 117 100.0 1e-25 MGYQGAAGNYLMSLTMEKVEKRLTDLSGALAHNYPEIKLTKYRHQLQRVLTAGLVTEKWE >gi|223713534|gb|ACDM01000064.1| GENE 58 56044 - 58674 3071 876 aa, chain + ## HITS:1 COG:alaS KEGG:ns NR:ns ## COG: alaS COG0013 # Protein_GI_number: 16130604 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 876 1 876 876 1721 100.0 0 MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYS RATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKW FALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCG PCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMG LERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVM PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL KTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKV DEAGFEAAMEEQRRRAREASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAV DAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIGHIGKLAAG SLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSH NEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGD FSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHL LKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSG VEPKMLRTMVDDLKNQLGSTIIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVG GKGGGRPDMAQAGGTDAAALPAALASVKGWVSAKLQ >gi|223713534|gb|ACDM01000064.1| GENE 59 58909 - 59094 204 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755] # 1 60 1 60 61 83 61 3e-15 MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSS Y Prediction of potential genes in microbial genomes Time: Mon May 16 19:14:19 2011 Seq name: gi|223713533|gb|ACDM01000065.1| Escherichia sp. 4_1_40B cont1.65, whole genome shotgun sequence Length of sequence - 45615 bp Number of predicted genes - 47, with homology - 47 Number of transcription units - 25, operones - 10 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 57 - 133 87.2 # Arg ACG 0 0 1 1 Op 1 6/0.000 + CDS 414 - 980 562 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 983 - 1042 3.6 2 1 Op 2 5/0.000 + CDS 1121 - 1390 211 ## COG1238 Predicted membrane protein + Prom 1392 - 1451 5.1 3 1 Op 3 6/0.000 + CDS 1477 - 3033 1769 ## COG2918 Gamma-glutamylcysteine synthetase + Term 3047 - 3078 2.5 + Prom 3069 - 3128 2.5 4 1 Op 4 . + CDS 3183 - 3698 592 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 3732 - 3763 3.4 - Term 3720 - 3751 3.4 5 2 Op 1 19/0.000 - CDS 3762 - 5300 1606 ## COG0477 Permeases of the major facilitator superfamily 6 2 Op 2 7/0.000 - CDS 5317 - 6489 1174 ## COG1566 Multidrug resistance efflux pump - Prom 6553 - 6612 1.9 - Term 6533 - 6568 5.0 7 2 Op 3 . - CDS 6616 - 7146 552 ## COG1846 Transcriptional regulators - Prom 7170 - 7229 5.2 8 3 Op 1 . - CDS 7237 - 7572 379 ## B21_02503 hypothetical protein 9 3 Op 2 4/0.500 - CDS 7562 - 8299 565 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 8319 - 8378 8.4 10 4 Tu 1 3/0.750 - CDS 8423 - 9607 1131 ## COG0477 Permeases of the major facilitator superfamily - Prom 9639 - 9698 4.5 - Term 9747 - 9788 1.7 11 5 Op 1 14/0.000 - CDS 9799 - 10791 1101 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components 12 5 Op 2 16/0.000 - CDS 10849 - 11913 1267 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 13 5 Op 3 5/0.000 - CDS 11906 - 13108 1169 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Term 13311 - 13347 2.4 14 5 Op 4 24/0.000 - CDS 13462 - 14421 995 ## COG0208 Ribonucleotide reductase, beta subunit 15 5 Op 5 18/0.000 - CDS 14431 - 16536 2109 ## COG0209 Ribonucleotide reductase, alpha subunit 16 5 Op 6 11/0.000 - CDS 16548 - 16958 256 ## COG1780 Protein involved in ribonucleotide reduction 17 5 Op 7 . - CDS 16955 - 17200 279 ## COG0695 Glutaredoxin and related proteins - Prom 17383 - 17442 3.9 - Term 17382 - 17418 5.6 18 6 Tu 1 . - CDS 17448 - 17777 276 ## COG4575 Uncharacterized conserved protein - Prom 17803 - 17862 2.4 + Prom 17782 - 17841 3.4 19 7 Tu 1 . + CDS 17929 - 18273 384 ## G2583_3317 hypothetical protein - Term 18265 - 18299 8.3 20 8 Tu 1 . - CDS 18310 - 18759 397 ## ECSP_3616 predicted inner membrane protein - Prom 18939 - 18998 5.9 + Prom 19220 - 19279 5.8 21 9 Tu 1 . + CDS 19428 - 19832 470 ## COG2916 DNA-binding protein H-NS - Term 19709 - 19742 1.0 22 10 Op 1 7/0.000 - CDS 19879 - 20403 410 ## COG0607 Rhodanese-related sulfurtransferase 23 10 Op 2 . - CDS 20413 - 20712 321 ## COG0640 Predicted transcriptional regulators - Prom 20736 - 20795 5.6 + Prom 20779 - 20838 4.8 24 11 Op 1 4/0.500 + CDS 20895 - 21053 218 ## COG0401 Uncharacterized homolog of Blt101 + Term 21069 - 21100 3.9 + Prom 21055 - 21114 2.2 25 11 Op 2 . + CDS 21137 - 21586 530 ## COG1652 Uncharacterized protein containing LysM domain - Term 21525 - 21558 5.1 26 12 Op 1 1/1.000 - CDS 21587 - 22249 702 ## COG1802 Transcriptional regulators 27 12 Op 2 4/0.500 - CDS 22270 - 23670 1461 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 23837 - 23896 2.0 - Term 23807 - 23850 3.0 28 13 Op 1 12/0.000 - CDS 23908 - 25188 1374 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 29 13 Op 2 3/0.750 - CDS 25202 - 26650 1769 ## COG1012 NAD-dependent aldehyde dehydrogenases 30 13 Op 3 . - CDS 26673 - 27941 1037 ## COG0579 Predicted dehydrogenase 31 13 Op 4 . - CDS 27961 - 28938 1046 ## JW5427 hypothetical protein - Prom 29160 - 29219 4.8 - Term 29223 - 29263 8.5 32 14 Op 1 7/0.000 - CDS 29274 - 29438 85 ## COG0366 Glycosidases - Prom 29499 - 29558 5.8 33 14 Op 2 7/0.000 - CDS 29685 - 30476 89 ## COG0366 Glycosidases 34 14 Op 3 7/0.000 - CDS 30489 - 31175 479 ## COG0366 Glycosidases 35 14 Op 4 . - CDS 31194 - 31526 81 ## COG0366 Glycosidases + TRNA 32086 - 32161 94.0 # Met CAT 0 0 + Prom 32714 - 32773 9.1 36 15 Tu 1 . + CDS 32911 - 33393 349 ## JW5424 hypothetical protein 37 16 Tu 1 . - CDS 33426 - 33566 80 ## gi|193071002|ref|ZP_03051930.1| hypothetical protein EcE110019_1782 - Prom 33671 - 33730 5.3 + Prom 33418 - 33477 1.8 38 17 Tu 1 . + CDS 33594 - 34283 188 ## ECSP_3600 hypothetical protein + Term 34406 - 34441 0.4 39 18 Tu 1 . + CDS 34713 - 34856 81 ## ECIAI39_2840 putative invertase fragment (fragment) + Prom 34891 - 34950 3.4 40 19 Tu 1 . + CDS 35195 - 39775 2439 ## COG3468 Type V secretory pathway, adhesin AidA + Term 39790 - 39818 1.0 + Prom 40119 - 40178 3.6 41 20 Tu 1 . + CDS 40224 - 41048 206 ## SARI_00213 hypothetical protein + Term 41190 - 41234 4.5 + Prom 41051 - 41110 10.3 42 21 Op 1 . + CDS 41353 - 41559 144 ## COG3311 Predicted transcriptional regulator 43 21 Op 2 . + CDS 41580 - 41879 169 ## ECIAI1_4502 hypothetical protein + Term 41928 - 41973 0.0 + Prom 41898 - 41957 7.5 44 22 Tu 1 . + CDS 42128 - 42403 190 ## gi|256024835|ref|ZP_05438700.1| hypothetical protein E4_15799 + Term 42425 - 42461 4.1 45 23 Tu 1 . - CDS 42945 - 43508 436 ## EcE24377A_2924 hypothetical protein - Prom 43736 - 43795 5.8 + Prom 44455 - 44514 10.6 46 24 Tu 1 . + CDS 44548 - 44973 171 ## EcE24377A_2923 hypothetical protein + Term 45080 - 45115 1.1 - Term 45048 - 45090 4.0 47 25 Tu 1 . - CDS 45115 - 45435 151 ## SeSA_A2901 hypothetical protein Predicted protein(s) >gi|223713533|gb|ACDM01000065.1| GENE 1 414 - 980 562 188 aa, chain + ## HITS:1 COG:yqaB KEGG:ns NR:ns ## COG: yqaB COG0637 # Protein_GI_number: 16130602 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1 188 1 188 188 372 100.0 1e-103 MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMIALNGSPTWRIAQAIIE LNQADLDPHALAREKTEAVRSMLLDSVEPLPLVDVVKSWHGRRPMAVGTGSESAIAEALL AHLGLRHYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPTQCVVFEDADFGIQAARAAGM DAVDVRLL >gi|223713533|gb|ACDM01000065.1| GENE 2 1121 - 1390 211 89 aa, chain + ## HITS:1 COG:yqaA KEGG:ns NR:ns ## COG: yqaA COG1238 # Protein_GI_number: 16130601 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 75 49 123 142 130 96.0 5e-31 MGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWM RISWGPVIFFCALVKRYAMLQLQQRPFRA >gi|223713533|gb|ACDM01000065.1| GENE 3 1477 - 3033 1769 518 aa, chain + ## HITS:1 COG:gshA KEGG:ns NR:ns ## COG: gshA COG2918 # Protein_GI_number: 16130600 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Escherichia coli K12 # 1 518 1 518 518 1084 100.0 0 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA >gi|223713533|gb|ACDM01000065.1| GENE 4 3183 - 3698 592 171 aa, chain + ## HITS:1 COG:luxS KEGG:ns NR:ns ## COG: luxS COG1854 # Protein_GI_number: 16130599 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Escherichia coli K12 # 1 171 1 171 171 351 100.0 4e-97 MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLF AGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQI PELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI >gi|223713533|gb|ACDM01000065.1| GENE 5 3762 - 5300 1606 512 aa, chain - ## HITS:1 COG:STM2815 KEGG:ns NR:ns ## COG: STM2815 COG0477 # Protein_GI_number: 16766126 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 502 1 502 512 907 95.0 0 MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGV ANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLI PLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVA VVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVV AVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYG YTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMD FGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTM WTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEI FWMSAGIFLVLLGLVWFAKPPFGAGGGGGGAH >gi|223713533|gb|ACDM01000065.1| GENE 6 5317 - 6489 1174 390 aa, chain - ## HITS:1 COG:emrA KEGG:ns NR:ns ## COG: emrA COG1566 # Protein_GI_number: 16130597 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 390 1 390 390 689 100.0 0 MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGN QIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMI NSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQ YNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPT TPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAF SLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRDGQVLANKVR STPVAVSTAREISLAPVNKLIDDIVKANAG >gi|223713533|gb|ACDM01000065.1| GENE 7 6616 - 7146 552 176 aa, chain - ## HITS:1 COG:ECs3546 KEGG:ns NR:ns ## COG: ECs3546 COG1846 # Protein_GI_number: 15832800 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 306 100.0 2e-83 MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMA LITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEK GHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAMS >gi|223713533|gb|ACDM01000065.1| GENE 8 7237 - 7572 379 111 aa, chain - ## HITS:1 COG:no KEGG:B21_02503 NR:ns ## KEGG: B21_02503 # Name: ygaH # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 111 1 111 111 176 100.0 2e-43 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII >gi|223713533|gb|ACDM01000065.1| GENE 9 7562 - 8299 565 245 aa, chain - ## HITS:1 COG:ygaZ KEGG:ns NR:ns ## COG: ygaZ COG1296 # Protein_GI_number: 16130594 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Escherichia coli K12 # 1 245 1 245 245 433 100.0 1e-121 MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLGFSPLESVFFSCIIYAG ASQFVITAMLAAGSSLWIAALTVMAMDVRHVLYGPSLRSRIIQRLQKSKTALWAFGLTDE VFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGAFSGSGLLQGYPAVEAALGFM LPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIPVAILAGIVCGCLTALIQAFWQG APDEL >gi|223713533|gb|ACDM01000065.1| GENE 10 8423 - 9607 1131 394 aa, chain - ## HITS:1 COG:ECs3543 KEGG:ns NR:ns ## COG: ECs3543 COG0477 # Protein_GI_number: 15832797 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 394 1 394 394 620 99.0 1e-177 MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYA AGLLFLVPLGDMFERRRLIVSMTLLAACGMLITASSQSLAMMILGTALTGLFSVVAQILV PLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANLGGWRTVFWVASVLMALMALA LWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRALLGCLTFANFSILWTSMAFLLAA PPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKSHHTTTFGLLLLLLSWLAIWFGHTS VLALIIGILVLDLTVQGVHITNQTVIYRIHPDARNRLTAGYMTSYFIGGAAGSLISASAW QHGGWAGVCLAGATIALVNLLVWWRGFHRQEAAN >gi|223713533|gb|ACDM01000065.1| GENE 11 9799 - 10791 1101 330 aa, chain - ## HITS:1 COG:ECs3542 KEGG:ns NR:ns ## COG: ECs3542 COG2113 # Protein_GI_number: 15832796 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Escherichia coli O157:H7 # 1 330 1 330 330 653 100.0 0 MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVN KPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLID KKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTV THNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNA DTKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASE GDIQGHVDGWIKAHQQQFDGWVNEALAAQK >gi|223713533|gb|ACDM01000065.1| GENE 12 10849 - 11913 1267 354 aa, chain - ## HITS:1 COG:proW KEGG:ns NR:ns ## COG: proW COG4176 # Protein_GI_number: 16130592 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Escherichia coli K12 # 1 354 1 354 354 583 100.0 1e-166 MADQNNPWDTTPAADSAAQSADAWGTPTTAPTDGGGADWLTSTPAPNVEHFNILDPFHKT LIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQI SGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKII RPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR LDMGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK >gi|223713533|gb|ACDM01000065.1| GENE 13 11906 - 13108 1169 400 aa, chain - ## HITS:1 COG:proV KEGG:ns NR:ns ## COG: proV COG4175 # Protein_GI_number: 16130591 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Escherichia coli K12 # 1 400 1 400 400 764 100.0 0 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIM GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN GEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSAL KLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALIDAPLAVDAQTPLSELL SHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDREGVNNG >gi|223713533|gb|ACDM01000065.1| GENE 14 13462 - 14421 995 319 aa, chain - ## HITS:1 COG:nrdF KEGG:ns NR:ns ## COG: nrdF COG0208 # Protein_GI_number: 16130590 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Escherichia coli K12 # 1 319 1 319 319 637 100.0 0 MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVF TGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDA AYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTN TADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDEL YAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS GSSYVMGKAVETEDEDWNF >gi|223713533|gb|ACDM01000065.1| GENE 15 14431 - 16536 2109 701 aa, chain - ## HITS:1 COG:nrdE KEGG:ns NR:ns ## COG: nrdE COG0209 # Protein_GI_number: 16130589 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Escherichia coli K12 # 1 701 14 714 714 1432 99.0 0 MDYHALNAMLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQRLNWLVNEGYYD ESVLNRYSRDFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMV ALTLAQGDETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRA VNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQG AGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYD VERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVN RANPIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFAR TVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDF TNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELF TRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRK EGKTGRVYYPAPFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATT RDINKAQIYAWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL >gi|223713533|gb|ACDM01000065.1| GENE 16 16548 - 16958 256 136 aa, chain - ## HITS:1 COG:ECs3537 KEGG:ns NR:ns ## COG: ECs3537 COG1780 # Protein_GI_number: 15832791 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Escherichia coli O157:H7 # 1 136 1 136 136 268 100.0 1e-72 MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPR QVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIEN VRKGVTEFWQRQPQNA >gi|223713533|gb|ACDM01000065.1| GENE 17 16955 - 17200 279 81 aa, chain - ## HITS:1 COG:ECs3536 KEGG:ns NR:ns ## COG: ECs3536 COG0695 # Protein_GI_number: 15832790 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli O157:H7 # 1 81 1 81 81 164 100.0 4e-41 MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLS WSGFRPDMINRLHPAPHAASA >gi|223713533|gb|ACDM01000065.1| GENE 18 17448 - 17777 276 109 aa, chain - ## HITS:1 COG:ECs3533 KEGG:ns NR:ns ## COG: ECs3533 COG4575 # Protein_GI_number: 15832787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 109 5 113 113 192 100.0 2e-49 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRAR MHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS >gi|223713533|gb|ACDM01000065.1| GENE 19 17929 - 18273 384 114 aa, chain + ## HITS:1 COG:no KEGG:G2583_3317 NR:ns ## KEGG: G2583_3317 # Name: ygaC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 114 1 114 114 221 100.0 8e-57 MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARMGRTALVIHPTLKERSS TLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVALERYLNGLFGEAS >gi|223713533|gb|ACDM01000065.1| GENE 20 18310 - 18759 397 149 aa, chain - ## HITS:1 COG:no KEGG:ECSP_3616 NR:ns ## KEGG: ECSP_3616 # Name: ygaW # Def: predicted inner membrane protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 149 1 149 149 269 100.0 2e-71 MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYSRLVAIPVNILIAWPYG MYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLVVGADWHQIMAAVSSNIVV SMLMGAVYGYFLDYCRRLFKVSRYQQVKA >gi|223713533|gb|ACDM01000065.1| GENE 21 19428 - 19832 470 134 aa, chain + ## HITS:1 COG:ECs3530 KEGG:ns NR:ns ## COG: ECs3530 COG2916 # Protein_GI_number: 15832784 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Escherichia coli O157:H7 # 1 134 1 134 134 213 100.0 1e-55 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA QALAEGKSLDDFLI >gi|223713533|gb|ACDM01000065.1| GENE 22 19879 - 20403 410 174 aa, chain - ## HITS:1 COG:ygaP KEGG:ns NR:ns ## COG: ygaP COG0607 # Protein_GI_number: 16130582 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 174 1 174 174 340 100.0 5e-94 MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQI IFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIA AGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA >gi|223713533|gb|ACDM01000065.1| GENE 23 20413 - 20712 321 99 aa, chain - ## HITS:1 COG:ygaV KEGG:ns NR:ns ## COG: ygaV COG0640 # Protein_GI_number: 16130581 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 99 1 99 99 162 100.0 2e-40 MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLA RMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP >gi|223713533|gb|ACDM01000065.1| GENE 24 20895 - 21053 218 52 aa, chain + ## HITS:1 COG:ECs3527 KEGG:ns NR:ns ## COG: ECs3527 COG0401 # Protein_GI_number: 15832781 # Func_class: S Function unknown # Function: Uncharacterized homolog of Blt101 # Organism: Escherichia coli O157:H7 # 1 52 1 52 52 77 100.0 6e-15 MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD >gi|223713533|gb|ACDM01000065.1| GENE 25 21137 - 21586 530 149 aa, chain + ## HITS:1 COG:ygaU KEGG:ns NR:ns ## COG: ygaU COG1652 # Protein_GI_number: 16130579 # Func_class: S Function unknown # Function: Uncharacterized protein containing LysM domain # Organism: Escherichia coli K12 # 1 149 1 149 149 267 100.0 4e-72 MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGD GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL YNKIFEANKPMLKSPDKIYPGQVLRIPEE >gi|223713533|gb|ACDM01000065.1| GENE 26 21587 - 22249 702 220 aa, chain - ## HITS:1 COG:ECs3525 KEGG:ns NR:ns ## COG: ECs3525 COG1802 # Protein_GI_number: 15832779 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 220 7 226 226 411 100.0 1e-115 MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVN QKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGGDEWEADVLAKAHLLSKLEACDAS EKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKH DQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMAGN >gi|223713533|gb|ACDM01000065.1| GENE 27 22270 - 23670 1461 466 aa, chain - ## HITS:1 COG:gabP KEGG:ns NR:ns ## COG: gabP COG1113 # Protein_GI_number: 16130577 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1 466 1 466 466 824 100.0 0 MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVM IMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSW VPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPY AEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNS VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSC LNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVF KFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVV MLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKTPVHNTR >gi|223713533|gb|ACDM01000065.1| GENE 28 23908 - 25188 1374 426 aa, chain - ## HITS:1 COG:gabT KEGG:ns NR:ns ## COG: gabT COG0160 # Protein_GI_number: 16130576 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli K12 # 1 426 1 426 426 854 100.0 0 MNSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE VQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAG NPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELF EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC FDEAKQ >gi|223713533|gb|ACDM01000065.1| GENE 29 25202 - 26650 1769 482 aa, chain - ## HITS:1 COG:gabD KEGG:ns NR:ns ## COG: gabD COG1012 # Protein_GI_number: 16130575 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 482 1 482 482 954 100.0 0 MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRA LPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFA EEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK PASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQ LMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDG VYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKA HERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYA RDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCI GL >gi|223713533|gb|ACDM01000065.1| GENE 30 26673 - 27941 1037 422 aa, chain - ## HITS:1 COG:ygaF KEGG:ns NR:ns ## COG: ygaF COG0579 # Protein_GI_number: 16130574 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli K12 # 1 422 23 444 444 859 99.0 0 MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGS LKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLN ADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNG VVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRR VLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDF LFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAF NQ >gi|223713533|gb|ACDM01000065.1| GENE 31 27961 - 28938 1046 325 aa, chain - ## HITS:1 COG:no KEGG:JW5427 NR:ns ## KEGG: JW5427 # Name: ygaT # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 325 1 325 325 639 100.0 0 MNALTAVQNNAVDSGQDYSGFTLTPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYK SFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAH LIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDE QNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPV MRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPH PDLRRELMRQRGYFAYASNHYQTHQ >gi|223713533|gb|ACDM01000065.1| GENE 32 29274 - 29438 85 54 aa, chain - ## HITS:1 COG:ECs3519 KEGG:ns NR:ns ## COG: ECs3519 COG0366 # Protein_GI_number: 15832773 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 54 282 335 335 103 94.0 1e-22 MGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL >gi|223713533|gb|ACDM01000065.1| GENE 33 29685 - 30476 89 263 aa, chain - ## HITS:1 COG:b2657 KEGG:ns NR:ns ## COG: b2657 COG0366 # Protein_GI_number: 16130571 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 54 263 1 210 210 419 100.0 1e-117 MIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPK SDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPK YHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASK PGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWD GQVLKSTTEIKNYDGSTRVGGEA >gi|223713533|gb|ACDM01000065.1| GENE 34 30489 - 31175 479 228 aa, chain - ## HITS:1 COG:ECs3518 KEGG:ns NR:ns ## COG: ECs3518 COG0366 # Protein_GI_number: 15832772 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 228 118 345 412 461 98.0 1e-130 MIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQ QETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEF ARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDA KKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY >gi|223713533|gb|ACDM01000065.1| GENE 35 31194 - 31526 81 110 aa, chain - ## HITS:1 COG:ECs3518 KEGG:ns NR:ns ## COG: ECs3518 COG0366 # Protein_GI_number: 15832772 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 109 1 109 412 211 94.0 3e-55 MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREI ISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT >gi|223713533|gb|ACDM01000065.1| GENE 36 32911 - 33393 349 160 aa, chain + ## HITS:1 COG:no KEGG:JW5424 NR:ns ## KEGG: JW5424 # Name: ypjC # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 160 1 160 160 271 100.0 6e-72 MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMM SECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQV WENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE >gi|223713533|gb|ACDM01000065.1| GENE 37 33426 - 33566 80 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|193071002|ref|ZP_03051930.1| ## NR: gi|193071002|ref|ZP_03051930.1| hypothetical protein EcE110019_1782 [Escherichia coli E110019] # 1 46 1 46 46 80 100.0 4e-14 MGCSFDSDKDEISSILFSYELRDSIQTFGGVSKITLRVLLGLSKPT >gi|223713533|gb|ACDM01000065.1| GENE 38 33594 - 34283 188 229 aa, chain + ## HITS:1 COG:no KEGG:ECSP_3600 NR:ns ## KEGG: ECSP_3600 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 221 229 449 449 405 90.0 1e-112 MNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHN NIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCF FSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNK IKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ >gi|223713533|gb|ACDM01000065.1| GENE 39 34713 - 34856 81 47 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_2840 NR:ns ## KEGG: ECIAI39_2840 # Name: pinH # Def: putative invertase fragment (fragment) # Organism: E.coli_IAI39 # Pathway: not_defined # 1 47 42 88 88 89 91.0 3e-17 MWHLVVLLEELCERGINFRALAQSIFAQQWGDECCKSKTICDLKVIV >gi|223713533|gb|ACDM01000065.1| GENE 40 35195 - 39775 2439 1526 aa, chain + ## HITS:1 COG:ypjA KEGG:ns NR:ns ## COG: ypjA COG3468 # Protein_GI_number: 16130562 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 1 1526 44 1569 1569 2320 99.0 0 MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETVDGNQKVNERGTTNNTH IINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTINGGRQSIHDGGISTGTTI ESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQIVKVQGHADGTTINKSGSQD VVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVYESRALDTTIEGGTQSLNSKSTA KNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVSGGTATNVTQHDGAILKTNTNGTTVSGT NSEGAFSIHNHVADNVLLENGGHLDINAYGSANKTIIKDKGTMSVLTNAKADATRIDNGG VMDVAGNATNTIINGGTQNINNYGIATGTNINSGTQNIKSGGKADTTIISSGSRQVVEKD GTAIGSNISAGGSLIVYTGGIAHGVNQETGSALVANTGAGTDIEGYNKLSHFTITGGEAN YVVLENTGELTVVAKTSAKNTTIDTGGKLIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVE QQSGGALIASTTSGTLIEGTNSYGDAFYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINA NGKMDVYGKDVGTVLNSAGTQTIYASATSDKANIKGGKQTVYGLATEANIESGEQIVDGG STEKTHINGGTQTVQNYGKAINTDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSV LNDGGTLDVREKGSATGIQQSSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANG GVLTVESDTSSDKTQVNMGGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVS ANGEAIKTKINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNL ATNMLLENGGNLLVLAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQAL ARAEDLQVAGGTAIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTL GNGVDTTLADLTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTN GIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTL VKTGGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDP KPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASP HNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIG FDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGL GGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGATLSYN MRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASFSSTLSG HLGVGYSHSAGVESPWNAVAGVNWSF >gi|223713533|gb|ACDM01000065.1| GENE 41 40224 - 41048 206 274 aa, chain + ## HITS:1 COG:no KEGG:SARI_00213 NR:ns ## KEGG: SARI_00213 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 269 1 269 281 525 98.0 1e-148 MNNWSPEHTKVIKSWFKIDTYRKFEDLSLIQFYHEIWARKLFFKEYREEFESRALAGYFS KIFSGNPFLIEEGQLGYMTPANKLFQPPHFFLTTLDRLAETSIIAMQRGGFLWHEGDNYS INAELREESLSDIMPDQFTRTIMFEIDLASGTDEEIAESLKAALPQWRKVKGIDENPLES VRFGYGTIKKLISYRVIPMLDILVWAAVKKIRVSDDRLSRLLYTDDDEESEMRQSSQIKD TDRPLALKSCTTDFIRQFHYFMNKNSHLKTNESL >gi|223713533|gb|ACDM01000065.1| GENE 42 41353 - 41559 144 68 aa, chain + ## HITS:1 COG:ECs3513 KEGG:ns NR:ns ## COG: ECs3513 COG3311 # Protein_GI_number: 15832767 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 68 1 68 68 102 69.0 2e-22 MKNQATRLIRLPEVLERTGYGKAWIYRLINDGKFPAPVKIGSRAIAFVESEIDSWIQSVI ETSRNNVA >gi|223713533|gb|ACDM01000065.1| GENE 43 41580 - 41879 169 99 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_4502 NR:ns ## KEGG: ECIAI1_4502 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 96 6 101 109 147 77.0 2e-34 MTIEEFVNEENHMCNLGQELFFKIFEPESIYNLPNNEFNKEIIYWLSQYLVGNLIQPLDA ISELNASKQIYVYETWFSLIKCPDEMKLLAKRIIEYLLD >gi|223713533|gb|ACDM01000065.1| GENE 44 42128 - 42403 190 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256024835|ref|ZP_05438700.1| ## NR: gi|256024835|ref|ZP_05438700.1| hypothetical protein E4_15799 [Escherichia sp. 4_1_40B] # 1 91 13 103 103 159 100.0 4e-38 MNNSIIVPEDKDFVCAFATSPNSFYEAIESYRNYVDLVQEIEFEHVFLYLLFSIVVNGST DITINDEVRMCIEQLVYEKNSIRNNNADKKM >gi|223713533|gb|ACDM01000065.1| GENE 45 42945 - 43508 436 187 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_2924 NR:ns ## KEGG: EcE24377A_2924 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 187 1 187 187 288 83.0 5e-77 MSITSVVLTKEQKSIIAEALEVMPEDLEEIKIKATSYKKTSFKDDFSMVFKGNMATLARM DLTPTAFRIVIYLFSAIDYGNIIPDFSQSRTAKELGLNKSNVSRAFKELFGKKILIRDTI DNQVYLNSNLCVKGIPRRFNEDLMDKFRKSRLETEDFANSFNFYRAWSKTKSVKNSRRRN PADGIPF >gi|223713533|gb|ACDM01000065.1| GENE 46 44548 - 44973 171 141 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_2923 NR:ns ## KEGG: EcE24377A_2923 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 141 1 141 141 241 90.0 8e-63 MSAINVLSQEEKFIHVVDKFITHNHNGVNNNVFYKKLYVLFAGYHLKYFYSRAQYRNSCY HVDNIMQMFMGVVSTLKTPLLRQLANSDTLLHCLNSLVNYISGNLDEAEHIYADLLAQYE KKRIARSLAYTPPGSVVRKRL >gi|223713533|gb|ACDM01000065.1| GENE 47 45115 - 45435 151 106 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A2901 NR:ns ## KEGG: SeSA_A2901 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 106 1 106 106 137 69.0 9e-32 MKTYAFTTLIASIFLLTGCTSEPSEQDIYTAMNKVVEQTNAIVKSIARNDITPDMLRKLK SVKKHDCEKLSDKSYKCNVTAVVDNEKRTAAVKLVKTDDGWQVVDK Prediction of potential genes in microbial genomes Time: Mon May 16 19:15:13 2011 Seq name: gi|223713532|gb|ACDM01000066.1| Escherichia sp. 4_1_40B cont1.66, whole genome shotgun sequence Length of sequence - 39400 bp Number of predicted genes - 39, with homology - 39 Number of transcription units - 23, operones - 12 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 286 - 558 154 ## SeSA_A2899 hypothetical protein - Prom 666 - 725 5.8 2 2 Op 1 . - CDS 747 - 2006 343 ## EcE24377A_2918 relaxase/mobilization nuclease domain-containing protein 3 2 Op 2 . - CDS 2003 - 2410 203 ## EcE24377A_2917 hypothetical protein - Prom 2494 - 2553 6.1 - Term 2498 - 2536 6.5 4 3 Op 1 . - CDS 2612 - 3565 428 ## SeSA_A2896 hypothetical protein 5 3 Op 2 . - CDS 3580 - 4020 337 ## EcE24377A_2914 hypothetical protein - Prom 4086 - 4145 10.9 6 4 Tu 1 . - CDS 4602 - 4838 147 ## PANA_2929 hypothetical protein + Prom 5599 - 5658 4.1 7 5 Op 1 . + CDS 5714 - 7819 172 ## Avin_31060 hypothetical protein 8 5 Op 2 . + CDS 7819 - 8724 135 ## COG2357 Uncharacterized protein conserved in bacteria + Term 8741 - 8786 8.2 9 6 Op 1 4/0.500 - CDS 9777 - 10673 204 ## COG1475 Predicted transcriptional regulators 10 6 Op 2 . - CDS 10670 - 11566 126 ## COG1475 Predicted transcriptional regulators 11 6 Op 3 1/0.875 - CDS 11556 - 12014 89 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 12191 - 12250 6.0 - Term 13342 - 13393 1.6 12 7 Tu 1 . - CDS 13395 - 14624 332 ## PROTEIN SUPPORTED gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 - Prom 14682 - 14741 3.6 13 8 Tu 1 . - CDS 15368 - 15850 495 ## COG0691 tmRNA-binding protein - Prom 15975 - 16034 5.3 + Prom 15823 - 15882 2.3 14 9 Op 1 9/0.375 + CDS 16009 - 16458 366 ## COG2867 Oligoketide cyclase/lipid transport protein 15 9 Op 2 . + CDS 16448 - 16738 271 ## COG2914 Uncharacterized protein conserved in bacteria + Term 16745 - 16789 7.8 - Term 16731 - 16777 8.2 16 10 Tu 1 . - CDS 16800 - 17141 356 ## COG2913 Small protein A (tmRNA-binding) - Prom 17194 - 17253 3.2 17 11 Op 1 17/0.000 - CDS 17290 - 18951 1559 ## COG0497 ATPase involved in DNA repair - Prom 18976 - 19035 4.7 18 11 Op 2 . - CDS 19037 - 19915 719 ## COG0061 Predicted sugar kinase - Prom 20037 - 20096 4.2 + Prom 19604 - 19663 2.6 19 12 Op 1 . + CDS 19847 - 20041 179 ## UTI89_C2948 hypothetical protein 20 12 Op 2 . + CDS 20038 - 20631 872 ## COG0576 Molecular chaperone GrpE (heat shock protein) + Term 20654 - 20693 5.1 21 13 Op 1 4/0.500 - CDS 20686 - 21927 1267 ## COG4536 Putative Mg2+ and Co2+ transporter CorB 22 13 Op 2 . - CDS 21993 - 22784 715 ## COG4137 ABC-type uncharacterized transport system, permease component - Prom 22815 - 22874 3.9 + Prom 22835 - 22894 5.2 23 14 Op 1 23/0.000 + CDS 22951 - 24312 1647 ## COG0541 Signal recognition particle GTPase 24 14 Op 2 12/0.125 + CDS 24501 - 24809 524 ## PROTEIN SUPPORTED gi|110806723|ref|YP_690243.1| 30S ribosomal protein S16 25 14 Op 3 30/0.000 + CDS 24828 - 25376 189 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 26 14 Op 4 33/0.000 + CDS 25407 - 26174 592 ## COG0336 tRNA-(guanine-N1)-methyltransferase 27 14 Op 5 . + CDS 26216 - 26563 573 ## PROTEIN SUPPORTED gi|15803128|ref|NP_289159.1| 50S ribosomal protein L19 + Term 26588 - 26634 9.6 28 15 Tu 1 . - CDS 26639 - 27022 257 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 29 16 Op 1 . - CDS 27137 - 28360 811 ## COG2199 FOG: GGDEF domain 30 16 Op 2 . - CDS 28353 - 28871 105 ## ECH74115_3842 hypothetical protein - Prom 28923 - 28982 4.1 31 17 Tu 1 . - CDS 29021 - 29383 307 ## B21_02455 hypothetical protein - Prom 29423 - 29482 5.9 + Prom 29426 - 29485 10.0 32 18 Op 1 7/0.375 + CDS 29596 - 30666 1085 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 33 18 Op 2 . + CDS 30677 - 31798 1250 ## COG0287 Prephenate dehydrogenase + Term 31806 - 31845 10.0 34 19 Tu 1 . - CDS 31841 - 33001 936 ## COG0077 Prephenate dehydratase - Prom 33166 - 33225 3.5 - Term 33198 - 33225 1.5 35 20 Tu 1 . - CDS 33251 - 33592 574 ## PROTEIN SUPPORTED gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA - Prom 33789 - 33848 4.5 - Term 33811 - 33842 2.4 36 21 Tu 1 . - CDS 33863 - 34600 868 ## COG4105 DNA uptake lipoprotein - Prom 34722 - 34781 4.5 + Prom 34621 - 34680 4.8 37 22 Op 1 11/0.125 + CDS 34735 - 35715 1148 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 38 22 Op 2 7/0.375 + CDS 35712 - 36443 578 ## COG1496 Uncharacterized conserved protein + Prom 36463 - 36522 4.7 39 23 Tu 1 . + CDS 36573 - 39146 1845 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 39151 - 39191 6.2 Predicted protein(s) >gi|223713532|gb|ACDM01000066.1| GENE 1 286 - 558 154 90 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A2899 NR:ns ## KEGG: SeSA_A2899 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 90 1 90 90 140 85.0 1e-32 MDNKTISCPFCFTQSPHGVRVCKGCHAKVAYGESPLSVAFLFQFVALALAWLVFSLTGST PASVITFFASVIILICIIKKKYADRVVFIR >gi|223713532|gb|ACDM01000066.1| GENE 2 747 - 2006 343 419 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_2918 NR:ns ## KEGG: EcE24377A_2918 # Name: not_defined # Def: relaxase/mobilization nuclease domain-containing protein # Organism: E.coli_E24377A # Pathway: not_defined # 4 419 1 404 404 675 82.0 0 MKGMQKIKRGKQFTGVVIYSLKSGSHHKITPYVIGGNMTGSTAAELISEFEGTRLLRPDV AKPVWHNSLRLPKGEKLSNRQWAAFADDYMARMGFTDTHLRCYIMHDDPDGQHIHIIASR INMVGGKLYLGKNENLIGTRIISELERVHGLTETTGVTGSSRQDKRKPSRNELMMAERTA APCPKSLLQALLDNALTHHPDLLTFVRLLEQEGVTCKPNIATTGKMSGFSFQYQGIAFKA SQLGKKYGWSSLQALIDFTPEHLSLLKEAQRPIEPTTAPVPVPVPVPVPVPVPVPVPVPV PSCESEEQAANRETILEKIHQLEEKIRLERQQETVGIIQLRSNLHNTARQIPRQRRLYSW LVLLVHIVALLRRRGMSLLHATAHPFHQILHLHILTPCHPMTTNTNKEQSFKNNNHPAP >gi|223713532|gb|ACDM01000066.1| GENE 3 2003 - 2410 203 135 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_2917 NR:ns ## KEGG: EcE24377A_2917 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 9 134 8 133 134 199 84.0 3e-50 MNSDMSNDDDITRVSKRGKFHTDKFPENEIRHHCISVRLNEEELIILDSKRGQYKKGEWL RMASLNKLPPVLPEINREAWIKLGSLSQDLNYLLSHLDSKSPDSELTRTELFALRRQIKT LRDHLIPSTFLESDP >gi|223713532|gb|ACDM01000066.1| GENE 4 2612 - 3565 428 317 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A2896 NR:ns ## KEGG: SeSA_A2896 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 317 1 315 315 362 59.0 9e-99 MSNYTEDNLFDSKTKKDVQNCIAAGIDINTLNEHGENALFGCDSIGALKAMIEAGIALNH TDCYGNNALFSRKSPRAVRLLIKSGINVHHKNNKGQSCLHWQRYAIDCAELLINAGIDIH STDNEGQTLLYDLLDHDVFDYWVNKGCDINHRDYGGKAVLDLPTDNEWWIYDFSINALKR HVDRIDSTPVLFKHVSTEALPLIALLHEKGRNILIAEHCSFALYVKNMKYFFTSLKKYTD ISHVQFYNCYHDKHIGIYTGIESVKWFIRNGIRMDDDILRQRSDSDKIFSYIAAREKKDL LKEMKPEIPRSSVRKRL >gi|223713532|gb|ACDM01000066.1| GENE 5 3580 - 4020 337 146 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_2914 NR:ns ## KEGG: EcE24377A_2914 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 146 1 146 146 146 59.0 3e-34 MKKQNYSTLTSYLSKTKKNTDLYRLYNPHFSIFCKNSIEDHVFYLNYFSRHMVTERNILT IFAIHTFFSYSMEKKDTIKAFTRFLKEENHDTFYQSFSFRGCNIIYTNKKGEVKEISWFS FSRIYDEIIKIKEYEYNNNTWHKTTA >gi|223713532|gb|ACDM01000066.1| GENE 6 4602 - 4838 147 78 aa, chain - ## HITS:1 COG:no KEGG:PANA_2929 NR:ns ## KEGG: PANA_2929 # Name: not_defined # Def: hypothetical protein # Organism: P.ananatis # Pathway: not_defined # 1 75 225 299 335 121 81.0 8e-27 MEKLISHCIKIKRAGYRPVILTLESKVIAARQLADNVGMSELIAIQAAETFIGNNIEEIA IYDGDKIRESLARLIHLL >gi|223713532|gb|ACDM01000066.1| GENE 7 5714 - 7819 172 701 aa, chain + ## HITS:1 COG:no KEGG:Avin_31060 NR:ns ## KEGG: Avin_31060 # Name: not_defined # Def: hypothetical protein # Organism: A.vinelandii # Pathway: not_defined # 4 699 6 703 705 583 46.0 1e-165 MLRKSKLTEIYKRFGFTEENTGNESIAVYSIKTGHYHNADILPLNNEVNVNQTFEEYRQL GYACQIKKYQSYEEAHKELFNGFFSVDSTKERLIKDYNTFTDSIVKIHSPTATYSYINSK YYLNGVIGEANVVTEILERIQHRRPILFLIEAAAGFGKTCTAYELLREIIVNNIGKIPLF SELSRNRQAKIFRYVLLDEIDRSFPLLSSALVRNEIRAGNVPVILDGFDELLHESTNGIE NNYEKTEPMLETISELLTDSAKVVLTTRRTAIFDGDEFHQWIASHQEDFDVIRIRIHEPQ IEDWLPGQRLDEISSTGFPLNKLSNPVLLSFLRCIDDTDFNKVISDPTTIVRKYFDSMLE RERKRQDLLMSIEDQYTILKIIADDMVEGNYTSESREYISLVITEKNQQLLEATRKLYTV DERPTTDELVNKLASHALLDRSGSENQGIGFVNEFVLGNFVSENIINDKSNEWIGDKRFI EPAVQSYMPRIDDEKELLWHSLEFALYFMSGNDKILYSHLLIGKVPLDLKNDSVEQLSIS KLSLGDINIIHDTIFVDCSFFSSIFTCGNYKNVTFVNCSFIDCSFNELSGREDIYFLGCE CDNDAINKKSVEINSENDHDITDCDIYILEKFCPRGSVSYHKHRPIKGLCSNNNQFQLSE ILHSLDKLRKDGLLLTPDKRSFLELNMARISEIKAILGRNF >gi|223713532|gb|ACDM01000066.1| GENE 8 7819 - 8724 135 301 aa, chain + ## HITS:1 COG:DR1631 KEGG:ns NR:ns ## COG: DR1631 COG2357 # Protein_GI_number: 15806636 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 21 186 52 220 394 62 27.0 8e-10 MYNGNELRIIQSLQKDIEDELNRIGLLYRFFSRTKSESSIIKKYEKEPNKYSEDGKKIQD LFGVRIILYFPDDLFIAQKTLEKLFEIESKTVDETTANLFAATRCNYVFKLPEVLSNDSV LLKKYSYIDTTFEVQFRTILSEGWHEVEHDLRYKCKEDWVEHNDLSRALNGIYASLETSD WGIMKLFEDLAYRNYKSSAWSAMLRNKLRLRMDDKLDEKIISIINEKELGKKFYRIDRDR LLSLMLDYNIDMPINLNNIIYLCNYFFIKSTELQDIAPALIMKKLTDADEKFNKNTILAS K >gi|223713532|gb|ACDM01000066.1| GENE 9 9777 - 10673 204 298 aa, chain - ## HITS:1 COG:SMa2147 KEGG:ns NR:ns ## COG: SMa2147 COG1475 # Protein_GI_number: 16263622 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Sinorhizobium meliloti # 2 128 15 142 296 75 30.0 1e-13 MIQIRFGKNFIYLETNKLIPSKELLENVKRSHKYHQIVTSIESLGIIEPIIVFYDKDKDV TKILDGHLRVEALKDLDIEKAPCILSSIDDAFTPNKQVNHINVVEEHRMIIKSLAKVSIE KLSAALGISVDAIKDKANVMNGIDPSVIAKLSDKPIPKATFDVLRKMKPIRQIEAVGTMI NFDNYSKKFAMSILDATPSSMIVNKGKNTPYKKDIKKTILRLEQEMATTSEETKKLQTEY GSDMLKFVIIQSYINKLLGNSKVLHWFLENEVDYLNELKRISRINSLDDKTLTENSQS >gi|223713532|gb|ACDM01000066.1| GENE 10 10670 - 11566 126 298 aa, chain - ## HITS:1 COG:AGpA53 KEGG:ns NR:ns ## COG: AGpA53 COG1475 # Protein_GI_number: 16119268 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 285 5 282 295 184 36.0 2e-46 MLPEKNEFPIIQIEIAKIKFLNPRTRNKVVHEEIKESIKKRGLSKPISVRAIDEDDFKYA LICGQGRIEALVALGETIIPAIIRDVSEEDAYVMSLVENIARRRPRSNELLQVIKDMKIR GLSDSEISEITGYSSNWVSSINMLLDKGEHKLLSAVERGNLPLYLAVQFARCETEEAQDI LTEAYDKKLIKSRDIIKIKYILNQRTVGNKGAKAAGFYYHKPSKRMTAEELIELYENSIA EHKSVYNNSKFIKTNLLIINEIFNIIMMNKSFQNILEQENLSELPSQILNPVNKEVSK >gi|223713532|gb|ACDM01000066.1| GENE 11 11556 - 12014 89 152 aa, chain - ## HITS:1 COG:AGpA54 KEGG:ns NR:ns ## COG: AGpA54 COG1961 # Protein_GI_number: 16119269 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 147 369 515 518 112 34.0 3e-25 MIGYKPEHDYSYLQINEALRSFYSEIIEDFKGEILKSNCHIDEYKYYPMLYINDEFLISV LVTKCIHMKSGKLRWKVRFDNSQKADITIVIRMNSQNISPLDFYIIPKIENEYSKMCMME TNNIRLDLYRFDNLDKFLQIITRMKVRELYAA >gi|223713532|gb|ACDM01000066.1| GENE 12 13395 - 14624 332 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 31 403 28 388 391 132 28 3e-30 MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK VSLGTYPHLTLAKARALRDEYLSLLANGIDPQIHNTHKANALKDATEHTFQAVAKKWLDE KVKTSGISQDHANDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRVI SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET RLLIEWQLLTWVRPGEAVRTRWSDIDIETSMWNIPAEFMKMKKPHKVPLSKESLRVLDSM KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEECGKFRT DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQKYKVIAA >gi|223713532|gb|ACDM01000066.1| GENE 13 15368 - 15850 495 160 aa, chain - ## HITS:1 COG:ECs3482 KEGG:ns NR:ns ## COG: ECs3482 COG0691 # Protein_GI_number: 15832736 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Escherichia coli O157:H7 # 1 160 1 160 160 308 100.0 3e-84 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR >gi|223713532|gb|ACDM01000066.1| GENE 14 16009 - 16458 366 149 aa, chain + ## HITS:1 COG:yfjG KEGG:ns NR:ns ## COG: yfjG COG2867 # Protein_GI_number: 16130538 # Func_class: I Lipid transport and metabolism # Function: Oligoketide cyclase/lipid transport protein # Organism: Escherichia coli K12 # 1 149 10 158 158 295 100.0 2e-80 MEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKA GISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIE LAFGRVFKELAANMVQAFTVRAKEVYSAR >gi|223713532|gb|ACDM01000066.1| GENE 15 16448 - 16738 271 96 aa, chain + ## HITS:1 COG:yfjF KEGG:ns NR:ns ## COG: yfjF COG2914 # Protein_GI_number: 16130537 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 96 7 102 102 163 98.0 7e-41 MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTKNKVGIYSRPA KLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK >gi|223713532|gb|ACDM01000066.1| GENE 16 16800 - 17141 356 113 aa, chain - ## HITS:1 COG:STM2685 KEGG:ns NR:ns ## COG: STM2685 COG2913 # Protein_GI_number: 16766000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Small protein A (tmRNA-binding) # Organism: Salmonella typhimurium LT2 # 1 111 1 111 112 198 92.0 2e-51 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALG TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN >gi|223713532|gb|ACDM01000066.1| GENE 17 17290 - 18951 1559 553 aa, chain - ## HITS:1 COG:recN KEGG:ns NR:ns ## COG: recN COG0497 # Protein_GI_number: 16130535 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Escherichia coli K12 # 1 553 1 553 553 1000 99.0 0 MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAA RADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLREL GQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHHQQLS QERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFE LEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEI ARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFDEHHLGADGADRIEFRVTTNP GQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVT RNTLANAKELLAA >gi|223713532|gb|ACDM01000066.1| GENE 18 19037 - 19915 719 292 aa, chain - ## HITS:1 COG:yfjB KEGG:ns NR:ns ## COG: yfjB COG0061 # Protein_GI_number: 16130534 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Escherichia coli K12 # 1 292 1 292 292 611 100.0 1e-175 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEI GQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGH YISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLI ISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDL EISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF >gi|223713532|gb|ACDM01000066.1| GENE 19 19847 - 20041 179 64 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C2948 NR:ns ## KEGG: UTI89_C2948 # Name: yfjC # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 64 20 83 83 118 100.0 7e-26 MCCQCSGVPWVSHNANTLEMIIHFSEVLVAKIDDNVSASLETLKLIPIISEVSEMNAKKT RRNS >gi|223713532|gb|ACDM01000066.1| GENE 20 20038 - 20631 872 197 aa, chain + ## HITS:1 COG:ECs3476 KEGG:ns NR:ns ## COG: ECs3476 COG0576 # Protein_GI_number: 15832730 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Escherichia coli O157:H7 # 1 197 1 197 197 315 100.0 3e-86 MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKIANLEAQLAEAQTRERD GILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMV EGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTL NGRTIRAAMVTVAKAKA >gi|223713532|gb|ACDM01000066.1| GENE 21 20686 - 21927 1267 413 aa, chain - ## HITS:1 COG:yfjDm KEGG:ns NR:ns ## COG: yfjDm COG4536 # Protein_GI_number: 16132248 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorB # Organism: Escherichia coli K12 # 5 413 12 420 420 771 100.0 0 MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNI LASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPL QILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLS VLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVR EAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGL VTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDART VNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE >gi|223713532|gb|ACDM01000066.1| GENE 22 21993 - 22784 715 263 aa, chain - ## HITS:1 COG:ECs3474 KEGG:ns NR:ns ## COG: ECs3474 COG4137 # Protein_GI_number: 15832728 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 263 26 288 288 446 100.0 1e-125 MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSG QNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEA TPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHIT QIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWF NVAGAVILTLAYFGSRIVQQLIS >gi|223713532|gb|ACDM01000066.1| GENE 23 22951 - 24312 1647 453 aa, chain + ## HITS:1 COG:ECs3473 KEGG:ns NR:ns ## COG: ECs3473 COG0541 # Protein_GI_number: 15832727 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 803 100.0 0 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQF DDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR >gi|223713532|gb|ACDM01000066.1| GENE 24 24501 - 24809 524 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|110806723|ref|YP_690243.1| 30S ribosomal protein S16 [Shigella flexneri 5 str. 8401] # 1 102 1 102 102 206 100 2e-52 MTPDSVPRWGPVVLFTQEDVMVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFN PIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA >gi|223713532|gb|ACDM01000066.1| GENE 25 24828 - 25376 189 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 11 177 2 160 179 77 29 1e-13 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP GF >gi|223713532|gb|ACDM01000066.1| GENE 26 25407 - 26174 592 255 aa, chain + ## HITS:1 COG:ECs3470 KEGG:ns NR:ns ## COG: ECs3470 COG0336 # Protein_GI_number: 15832724 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Escherichia coli O157:H7 # 1 255 1 255 255 488 100.0 1e-138 MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGM LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDE RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPH YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF KTEHAQQQHKHDGMA >gi|223713532|gb|ACDM01000066.1| GENE 27 26216 - 26563 573 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803128|ref|NP_289159.1| 50S ribosomal protein L19 [Escherichia coli O157:H7 EDL933] # 1 115 1 115 115 225 100 4e-58 MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT VRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN >gi|223713532|gb|ACDM01000066.1| GENE 28 26639 - 27022 257 127 aa, chain - ## HITS:1 COG:yfiB KEGG:ns NR:ns ## COG: yfiB COG2885 # Protein_GI_number: 16130526 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli K12 # 1 127 34 160 160 244 100.0 3e-65 MQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTD NYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRV AVVITTP >gi|223713532|gb|ACDM01000066.1| GENE 29 27137 - 28360 811 407 aa, chain - ## HITS:1 COG:yfiN_2 KEGG:ns NR:ns ## COG: yfiN_2 COG2199 # Protein_GI_number: 16130525 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 240 407 1 168 168 333 100.0 3e-91 MDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLTLKQYAQKNLALTAATMT YSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNILASWHYTRKDPGDTFSNFIS HWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSLAVLTGCILLASGIAITLTRHL HNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFHRFALDFNSLLDEMEEWQLRLQAK NAQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHAT GDRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDL HNGHQTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR >gi|223713532|gb|ACDM01000066.1| GENE 30 28353 - 28871 105 172 aa, chain - ## HITS:1 COG:no KEGG:ECH74115_3842 NR:ns ## KEGG: ECH74115_3842 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 172 1 172 172 329 100.0 2e-89 MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSS RFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLI AEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG >gi|223713532|gb|ACDM01000066.1| GENE 31 29021 - 29383 307 120 aa, chain - ## HITS:1 COG:no KEGG:B21_02455 NR:ns ## KEGG: B21_02455 # Name: yfiL # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 120 2 121 121 238 100.0 5e-62 MKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISGSAIKDDDAFSDSQADRG LYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQLHEVWQKGADENASTIRLN >gi|223713532|gb|ACDM01000066.1| GENE 32 29596 - 30666 1085 356 aa, chain + ## HITS:1 COG:aroF KEGG:ns NR:ns ## COG: aroF COG0722 # Protein_GI_number: 16130522 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli K12 # 1 356 1 356 356 709 100.0 0 MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCG PCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDV EAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGL SMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKAP NYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGL MIESNIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLNGQLTARVA >gi|223713532|gb|ACDM01000066.1| GENE 33 30677 - 31798 1250 373 aa, chain + ## HITS:1 COG:ECs3463_2 KEGG:ns NR:ns ## COG: ECs3463_2 COG0287 # Protein_GI_number: 15832717 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Escherichia coli O157:H7 # 100 373 1 274 274 555 99.0 1e-158 MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAE AEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTL SGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIGKLPPLPKDCILVDLASVKNG PLQAMLVAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRI SAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDP QLYADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSE SRVLLRQANDNRQ >gi|223713532|gb|ACDM01000066.1| GENE 34 31841 - 33001 936 386 aa, chain - ## HITS:1 COG:ECs3462_2 KEGG:ns NR:ns ## COG: ECs3462_2 COG0077 # Protein_GI_number: 15832716 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Escherichia coli O157:H7 # 105 386 1 282 282 568 100.0 1e-162 MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLI TLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARIAFLGPKGSYSHLAA RQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHTSLSI VGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSKFLNRYPHWKIEYTESTSAAMEK VAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLARKAINVSDQVPAKTTL LMATGQQAGALVEALLVLRNHNLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQKALK ELGEITRSMKVLGCYPSENVVPVDPT >gi|223713532|gb|ACDM01000066.1| GENE 35 33251 - 33592 574 113 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA [Escherichia coli O157:H7 EDL933] # 1 113 1 113 113 225 100 3e-58 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGV LVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE >gi|223713532|gb|ACDM01000066.1| GENE 36 33863 - 34600 868 245 aa, chain - ## HITS:1 COG:ECs3458 KEGG:ns NR:ns ## COG: ECs3458 COG4105 # Protein_GI_number: 15832712 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 466 100.0 1e-131 MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDN RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD DSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA NSSNT >gi|223713532|gb|ACDM01000066.1| GENE 37 34735 - 35715 1148 326 aa, chain + ## HITS:1 COG:sfhB KEGG:ns NR:ns ## COG: sfhB COG0564 # Protein_GI_number: 16130515 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Escherichia coli K12 # 1 326 1 326 326 625 100.0 1e-179 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP IPQDMVELIEVMRADFEEHKDEVDWL >gi|223713532|gb|ACDM01000066.1| GENE 38 35712 - 36443 578 243 aa, chain + ## HITS:1 COG:yfiH KEGG:ns NR:ns ## COG: yfiH COG1496 # Protein_GI_number: 16130514 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 243 1 243 243 508 100.0 1e-144 MSKLIVPQWPQPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNPDHVEENRKRLFAAGNL PSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNRAGTEV AAAHAGWRGLCAGVLEETVSCFADNPENILAWLGPAIGPRAFEVGGEVREAFMAVDAKAS AAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKTTGRMASFI WLI >gi|223713532|gb|ACDM01000066.1| GENE 39 36573 - 39146 1845 857 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 857 1 811 815 715 46 0.0 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQL RTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRG TLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPV IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK PALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRII QLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVL ARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGS FLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLK RLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVP GKVIRLEVNEDRIVAVQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:16:22 2011 Seq name: gi|223713531|gb|ACDM01000067.1| Escherichia sp. 4_1_40B cont1.67, whole genome shotgun sequence Length of sequence - 112543 bp Number of predicted genes - 103, with homology - 101 Number of transcription units - 64, operones - 19 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 69 - 452 258 ## UTI89_C4570 hypothetical protein 2 2 Tu 1 . - CDS 515 - 958 377 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 978 - 1037 3.5 + Prom 934 - 993 4.4 3 3 Tu 1 . + CDS 1115 - 2044 928 ## COG1897 Homoserine trans-succinylase + Term 2090 - 2118 1.0 + Prom 2130 - 2189 7.2 4 4 Op 1 7/0.050 + CDS 2313 - 3914 1581 ## COG2225 Malate synthase 5 4 Op 2 5/0.200 + CDS 3944 - 5248 1528 ## COG2224 Isocitrate lyase + Term 5471 - 5514 2.1 + Prom 5266 - 5325 2.5 6 5 Tu 1 . + CDS 5529 - 7265 1264 ## COG4579 Isocitrate dehydrogenase kinase/phosphatase 7 6 Tu 1 . - CDS 7234 - 8586 366 ## COG0666 FOG: Ankyrin repeat - Prom 8610 - 8669 2.5 8 7 Tu 1 . - CDS 9737 - 10561 715 ## COG1414 Transcriptional regulator - Prom 10721 - 10780 3.7 + Prom 10557 - 10616 5.3 9 8 Tu 1 . + CDS 10761 - 14444 4110 ## COG1410 Methionine synthase I, cobalamin-binding domain + Term 14477 - 14513 7.1 + Prom 14462 - 14521 4.3 10 9 Tu 1 . + CDS 14664 - 16295 1821 ## COG1283 Na+/phosphate symporter - Term 16347 - 16379 3.2 11 10 Tu 1 . - CDS 16386 - 17075 812 ## COG3340 Peptidase E - Prom 17280 - 17339 3.2 + Prom 17208 - 17267 4.3 12 11 Tu 1 . + CDS 17287 - 18159 874 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 18205 - 18257 2.5 - Term 18173 - 18222 -0.9 13 12 Tu 1 . - CDS 18292 - 18564 350 ## B21_03855 hypothetical protein - Prom 18667 - 18726 6.8 - Term 18769 - 18810 5.5 14 13 Tu 1 . - CDS 18817 - 20166 1459 ## COG0527 Aspartokinases + Prom 20597 - 20656 5.4 15 14 Tu 1 . + CDS 20691 - 22340 1988 ## COG0166 Glucose-6-phosphate isomerase + Term 22368 - 22427 6.2 + Prom 22612 - 22671 9.6 16 15 Tu 1 . + CDS 22839 - 23081 185 ## + Term 23153 - 23180 0.1 + Prom 23087 - 23146 2.1 17 16 Op 1 . + CDS 23195 - 23833 651 ## JW5711 predicted lipoprotein 18 16 Op 2 . + CDS 23830 - 24567 535 ## S3554 hypothetical protein 19 16 Op 3 . + CDS 24567 - 26663 2297 ## JW3989 predicted porin + Term 26671 - 26717 6.0 + Prom 27068 - 27127 2.5 20 17 Tu 1 . + CDS 27258 - 27668 597 ## COG3223 Predicted membrane protein + Term 27707 - 27751 1.9 - Term 27658 - 27704 8.2 21 18 Tu 1 . - CDS 27712 - 29187 1657 ## COG0477 Permeases of the major facilitator superfamily - Prom 29310 - 29369 5.2 - Term 29458 - 29488 3.0 22 19 Op 1 20/0.000 - CDS 29559 - 30449 1108 ## COG3833 ABC-type maltose transport systems, permease component 23 19 Op 2 19/0.000 - CDS 30464 - 32008 1668 ## COG1175 ABC-type sugar transport systems, permease components - Prom 32084 - 32143 5.0 - Term 32052 - 32097 4.3 24 19 Op 3 . - CDS 32162 - 33352 1460 ## COG2182 Maltose-binding periplasmic proteins/domains + Prom 33610 - 33669 2.0 25 20 Op 1 5/0.200 + CDS 33717 - 34832 1237 ## COG3839 ABC-type sugar transport systems, ATPase components 26 20 Op 2 . + CDS 34907 - 36244 1493 ## COG4580 Maltoporin (phage lambda and maltose receptor) + Term 36430 - 36480 1.3 + Prom 36343 - 36402 4.2 27 21 Tu 1 . + CDS 36487 - 37407 823 ## B21_03869 hypothetical protein + Term 37440 - 37471 3.2 - Term 37268 - 37302 -0.3 28 22 Tu 1 . - CDS 37382 - 37534 56 ## ECBD_3997 hypothetical protein + Prom 37451 - 37510 7.2 29 23 Tu 1 . + CDS 37678 - 37830 57 ## COG1357 Uncharacterized low-complexity proteins 30 24 Tu 1 . + CDS 38347 - 39216 310 ## COG1357 Uncharacterized low-complexity proteins + Prom 39356 - 39415 4.2 31 25 Op 1 6/0.050 + CDS 39439 - 39936 587 ## COG3161 4-hydroxybenzoate synthetase (chorismate lyase) 32 25 Op 2 . + CDS 39949 - 40821 1090 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases + Term 40834 - 40863 2.1 - Term 40819 - 40855 5.8 33 26 Tu 1 . - CDS 40976 - 43459 2601 ## COG2937 Glycerol-3-phosphate O-acyltransferase - Prom 43570 - 43629 6.0 + Prom 43311 - 43370 4.0 34 27 Tu 1 . + CDS 43570 - 43938 434 ## COG0818 Diacylglycerol kinase + Term 43951 - 43988 -1.0 + Prom 43961 - 44020 8.2 35 28 Op 1 1/0.900 + CDS 44048 - 44656 543 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 44668 - 44707 8.9 36 28 Op 2 . + CDS 44729 - 46054 1347 ## COG0534 Na+-driven multidrug efflux pump + Prom 46059 - 46118 2.5 37 29 Tu 1 . + CDS 46170 - 46379 377 ## COG3237 Uncharacterized protein conserved in bacteria 38 30 Tu 1 . - CDS 46421 - 46936 499 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 47085 - 47144 4.1 + Prom 47037 - 47096 7.7 39 31 Op 1 . + CDS 47254 - 47508 166 ## SSON_4227 hypothetical protein 40 31 Op 2 . + CDS 47532 - 48239 346 ## JW4008 hypothetical protein + Term 48281 - 48314 3.1 + Prom 48322 - 48381 6.1 41 32 Tu 1 . + CDS 48602 - 49639 1115 ## COG0042 tRNA-dihydrouridine synthase + Term 49670 - 49707 7.0 + Prom 49687 - 49746 4.4 42 33 Tu 1 . + CDS 49773 - 50015 411 ## ECIAI39_4470 phage shock protein G + Term 50148 - 50189 5.4 - Term 50139 - 50172 4.1 43 34 Tu 1 . - CDS 50181 - 51164 829 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 51237 - 51296 1.7 + Prom 51133 - 51192 3.1 44 35 Op 1 9/0.050 + CDS 51247 - 52662 1603 ## COG0305 Replicative DNA helicase 45 35 Op 2 5/0.200 + CDS 52715 - 53794 993 ## COG0787 Alanine racemase + Prom 53807 - 53866 3.7 46 36 Tu 1 . + CDS 54047 - 55240 1260 ## COG1448 Aspartate/tyrosine/aromatic aminotransferase 47 37 Tu 1 . - CDS 55742 - 55984 182 ## ECSE_4348 hypothetical protein + Prom 56164 - 56223 7.7 48 38 Tu 1 . + CDS 56347 - 57060 528 ## COG3700 Acid phosphatase (class B) + Prom 57088 - 57147 3.3 49 39 Op 1 4/0.500 + CDS 57171 - 57587 375 ## COG0432 Uncharacterized conserved protein 50 39 Op 2 . + CDS 57591 - 57947 483 ## COG2315 Uncharacterized protein conserved in bacteria - Term 57944 - 57974 3.4 51 40 Tu 1 . - CDS 57982 - 60804 3182 ## COG0178 Excinuclease ATPase subunit - Prom 60865 - 60924 5.0 + Prom 60972 - 61031 5.6 52 41 Tu 1 . + CDS 61058 - 61594 735 ## COG0629 Single-stranded DNA-binding protein + Term 61667 - 61695 1.4 - Term 61652 - 61686 5.2 53 42 Tu 1 . - CDS 61693 - 61974 262 ## ECSE_4354 hypothetical protein + Prom 62277 - 62336 3.7 54 43 Tu 1 . + CDS 62404 - 63990 1104 ## COG4943 Predicted signal transduction protein containing sensor and EAL domains - Term 63946 - 63987 7.7 55 44 Tu 1 . - CDS 63993 - 64316 310 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 64357 - 64416 5.8 + Prom 64319 - 64378 5.6 56 45 Tu 1 . + CDS 64402 - 64866 498 ## COG0789 Predicted transcriptional regulators + Term 64868 - 64894 -0.7 57 46 Tu 1 . + CDS 65412 - 66761 1598 ## COG2252 Permeases + Term 66777 - 66820 9.2 + Prom 66801 - 66860 3.8 58 47 Tu 1 . + CDS 66912 - 68561 1699 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 68747 - 68781 1.2 - Term 68590 - 68619 1.4 59 48 Tu 1 . - CDS 68715 - 70007 416 ## COG1357 Uncharacterized low-complexity proteins - Prom 70090 - 70149 4.5 - Term 70138 - 70175 7.8 60 49 Op 1 10/0.000 - CDS 70185 - 71834 2204 ## COG4147 Predicted symporter 61 49 Op 2 . - CDS 71831 - 72145 378 ## COG3162 Predicted membrane protein - Prom 72197 - 72256 4.2 62 50 Tu 1 . + CDS 72104 - 72280 60 ## + Term 72282 - 72306 -1.0 - Term 72262 - 72306 4.1 63 51 Tu 1 . - CDS 72345 - 74303 2293 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 74529 - 74588 7.0 64 52 Op 1 . + CDS 74696 - 76132 1577 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit 65 52 Op 2 . + CDS 76177 - 76743 385 ## G2583_4896 NrfB, formate-dependent nitrite reductase 66 52 Op 3 8/0.050 + CDS 76740 - 77411 428 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 67 52 Op 4 5/0.200 + CDS 77408 - 78364 1254 ## COG3301 Formate-dependent nitrite reductase, membrane component + Term 78365 - 78401 -0.9 68 53 Op 1 7/0.050 + CDS 78498 - 80102 1238 ## COG1138 Cytochrome c biogenesis factor 69 53 Op 2 9/0.050 + CDS 80095 - 80478 325 ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes 70 53 Op 3 4/0.500 + CDS 80475 - 81071 666 ## COG4235 Cytochrome c biogenesis factor + Prom 81106 - 81165 8.3 71 54 Tu 1 . + CDS 81413 - 82726 1736 ## COG1301 Na+/H+-dicarboxylate symporters + Term 82752 - 82799 -1.0 - Term 82980 - 83025 3.9 72 55 Tu 1 4/0.500 - CDS 83031 - 83720 599 ## COG0790 FOG: TPR repeat, SEL1 subfamily - Prom 83744 - 83803 5.1 - Term 83768 - 83799 4.1 73 56 Op 1 5/0.200 - CDS 83814 - 85493 1815 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 74 56 Op 2 3/0.700 - CDS 85542 - 85961 308 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 86023 - 86082 3.0 - Term 86115 - 86152 6.2 75 57 Op 1 2/0.800 - CDS 86159 - 87625 1482 ## COG1538 Outer membrane protein 76 57 Op 2 6/0.050 - CDS 87622 - 89673 1488 ## COG1289 Predicted membrane protein 77 57 Op 3 . - CDS 89673 - 90704 1039 ## COG1566 Multidrug resistance efflux pump 78 57 Op 4 . - CDS 90723 - 90998 177 ## EcHS_A4328 hypothetical protein - Prom 91121 - 91180 13.9 - Term 91158 - 91197 8.3 79 58 Tu 1 . - CDS 91207 - 93192 2311 ## COG2015 Alkyl sulfatase and related hydrolases - Prom 93395 - 93454 5.9 80 59 Op 1 2/0.800 - CDS 93465 - 94394 574 ## COG1940 Transcriptional regulator/sugar kinase 81 59 Op 2 2/0.800 - CDS 94378 - 95073 819 ## COG0036 Pentose-5-phosphate-3-epimerase 82 59 Op 3 21/0.000 - CDS 95084 - 96064 1083 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 83 59 Op 4 16/0.000 - CDS 96043 - 97575 175 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 97596 - 97655 2.0 84 59 Op 5 . - CDS 97702 - 98637 939 ## COG1879 ABC-type sugar transport system, periplasmic component 85 59 Op 6 . - CDS 98696 - 99586 571 ## COG1737 Transcriptional regulators - Prom 99680 - 99739 10.4 + Prom 99668 - 99727 8.5 86 60 Op 1 . + CDS 99945 - 100394 324 ## COG0698 Ribose 5-phosphate isomerase RpiB 87 60 Op 2 . + CDS 100463 - 100792 230 ## B21_03923 hypothetical protein 88 61 Op 1 3/0.700 - CDS 100939 - 101697 628 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 89 61 Op 2 3/0.700 - CDS 101699 - 102133 523 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 90 61 Op 3 7/0.050 - CDS 102120 - 102677 478 ## COG3709 Uncharacterized component of phosphonate metabolism 91 61 Op 4 6/0.050 - CDS 102677 - 103813 1143 ## COG3454 Metal-dependent hydrolase involved in phosphonate metabolism 92 61 Op 5 7/0.050 - CDS 103810 - 104490 223 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 104530 - 104589 1.9 93 62 Op 1 7/0.050 - CDS 104601 - 105359 376 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 94 62 Op 2 8/0.050 - CDS 105356 - 106201 898 ## COG3627 Uncharacterized enzyme of phosphonate metabolism 95 62 Op 3 8/0.050 - CDS 106194 - 107258 1230 ## COG3626 Uncharacterized enzyme of phosphonate metabolism 96 62 Op 4 9/0.050 - CDS 107258 - 107842 654 ## COG3625 Uncharacterized enzyme of phosphonate metabolism 97 62 Op 5 5/0.200 - CDS 107839 - 108291 424 ## COG3624 Uncharacterized enzyme of phosphonate metabolism 98 62 Op 6 3/0.700 - CDS 108292 - 109017 580 ## COG2188 Transcriptional regulators 99 62 Op 7 8/0.050 - CDS 109038 - 109406 391 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 100 62 Op 8 8/0.050 - CDS 109256 - 109825 71 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 101 63 Op 1 15/0.000 - CDS 109931 - 110947 1126 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component 102 63 Op 2 3/0.700 - CDS 110972 - 111760 264 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 111813 - 111872 4.5 103 64 Tu 1 . - CDS 111893 - 112336 545 ## COG2764 Uncharacterized protein conserved in bacteria - Prom 112375 - 112434 1.6 Predicted protein(s) >gi|223713531|gb|ACDM01000067.1| GENE 1 69 - 452 258 127 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C4570 NR:ns ## KEGG: UTI89_C4570 # Name: yjaA # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 127 13 139 139 223 97.0 2e-57 MSVLYIQIRRNQITVRDLESKREVSGDAAFSNQRLLIANFFVAEKVLQDLVLQLHPRSTW HSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVAGATLMKYRQFHIHAQSAVLSDSAV MAMLKQK >gi|223713531|gb|ACDM01000067.1| GENE 2 515 - 958 377 147 aa, chain - ## HITS:1 COG:yjaB KEGG:ns NR:ns ## COG: yjaB COG0454 # Protein_GI_number: 16131838 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1 147 1 147 147 304 100.0 4e-83 MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERD QPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQNEQAVGFYKKV GFKVTGRSEVDDLGKPYPLLNLAYVGA >gi|223713531|gb|ACDM01000067.1| GENE 3 1115 - 2044 928 309 aa, chain + ## HITS:1 COG:metA KEGG:ns NR:ns ## COG: metA COG1897 # Protein_GI_number: 16131839 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Escherichia coli K12 # 1 309 1 309 309 627 99.0 1e-179 MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSN SPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQDQNFDGLIVTGAPLGLVEFNDVAY WPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTRTDKLSGVYEHHILHPHALLT RGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGDAYLFASKDKRIAFVTGHPEYDA QTLAQEFFRDVEAGLDPDVPYNYFPHNDPQNTPRASWRSHGNLLFTNWLNYYVYQITPYD LRHMNPTLD >gi|223713531|gb|ACDM01000067.1| GENE 4 2313 - 3914 1581 533 aa, chain + ## HITS:1 COG:aceB KEGG:ns NR:ns ## COG: aceB COG2225 # Protein_GI_number: 16131840 # Func_class: C Energy production and conversion # Function: Malate synthase # Organism: Escherichia coli K12 # 1 533 1 533 533 1112 100.0 0 MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDN GTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFED SLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWR GEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPR GTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQA VTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNG HDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRA NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFR QMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA >gi|223713531|gb|ACDM01000067.1| GENE 5 3944 - 5248 1528 434 aa, chain + ## HITS:1 COG:aceA KEGG:ns NR:ns ## COG: aceA COG2224 # Protein_GI_number: 16131841 # Func_class: C Energy production and conversion # Function: Isocitrate lyase # Organism: Escherichia coli K12 # 1 434 1 434 434 866 100.0 0 MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGE SKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAV VERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGA AAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADL ITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARR FAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWF NMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTS SVTALTGSTEESQF >gi|223713531|gb|ACDM01000067.1| GENE 6 5529 - 7265 1264 578 aa, chain + ## HITS:1 COG:aceK KEGG:ns NR:ns ## COG: aceK COG4579 # Protein_GI_number: 16131842 # Func_class: T Signal transduction mechanisms # Function: Isocitrate dehydrogenase kinase/phosphatase # Organism: Escherichia coli K12 # 1 578 1 578 578 1189 100.0 0 MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQQAMKNRIHLYDHHVGL VVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESFFNSVYCRLFDHRSLTPER LFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDLPLRLRWQNKSRDIHYIIRHL TETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSGTLPFLLPIHQTDDGELFIDTCL TTTAEASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYRE YLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDRFAPQKEMSAAHVRACYQLV KEHDRVGRMADTQEFENFVLEKRHISPALMELLLQEAAEKITDLGEQIVIRHLYIERRMV PLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEIC YMTEVNFRDIPPPRYPEDELASEPWYSVSPGDVFPEEFRHWLCADPRIGPLFEEMHADLF RADYWRALQNRIREGHVEDVYAYRRRQRFSVRYGEMLF >gi|223713531|gb|ACDM01000067.1| GENE 7 7234 - 8586 366 450 aa, chain - ## HITS:1 COG:arp KEGG:ns NR:ns ## COG: arp COG0666 # Protein_GI_number: 16131843 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1 450 279 728 728 877 100.0 0 MSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPP LSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIV ETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAA THHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDL LKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGL FMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVV ETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAE SFGFTDNPRYIAEKNYMEALLKKASPHTVR >gi|223713531|gb|ACDM01000067.1| GENE 8 9737 - 10561 715 274 aa, chain - ## HITS:1 COG:ECs4936 KEGG:ns NR:ns ## COG: ECs4936 COG1414 # Protein_GI_number: 15834190 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 274 14 287 287 526 100.0 1e-149 MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTT HRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETV NMAVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHR KGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISI SGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR >gi|223713531|gb|ACDM01000067.1| GENE 9 10761 - 14444 4110 1227 aa, chain + ## HITS:1 COG:metH_2 KEGG:ns NR:ns ## COG: metH_2 COG1410 # Protein_GI_number: 16131845 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Escherichia coli K12 # 327 1227 1 901 901 1832 99.0 0 MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSK PEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTA RTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILI ETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEA LTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQ AGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVG ERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLI AGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAV VVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQ DFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAG QLAIYDDLPAELCDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVN KRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVK SARVMKQAVAYLEPFIEASKEQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL GVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKA HTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPR TPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKY PRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRT HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQH DDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYP ACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQV EDYARRKGMSVTEVERWLAPNLGYDAD >gi|223713531|gb|ACDM01000067.1| GENE 10 14664 - 16295 1821 543 aa, chain + ## HITS:1 COG:yjbB KEGG:ns NR:ns ## COG: yjbB COG1283 # Protein_GI_number: 16131846 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Escherichia coli K12 # 1 543 1 543 543 945 100.0 0 MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQS SNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFL GRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDILLDALIGAM FAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVAL GSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVIYFHVFYNLVRCLVMLPFVDPMARF CKTIIRDEPELDTQLRPKHLDVSALDTPTLALANAARETLRIGDAMEQMMEGLNKVMHGE PRQEKELRKLADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVER MGSEIADKSLAARRAFSLDGLKELDALYEQLLSNLKLAMSVFFSGDVTSARRLRRSKHRF RILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGR DEY >gi|223713531|gb|ACDM01000067.1| GENE 11 16386 - 17075 812 229 aa, chain - ## HITS:1 COG:ECs4939 KEGG:ns NR:ns ## COG: ECs4939 COG3340 # Protein_GI_number: 15834193 # Func_class: E Amino acid transport and metabolism # Function: Peptidase E # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 451 99.0 1e-127 MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQTWDDYTAKTAAVLAPL GVSVTGIHSVVDPVAAIENTEIVIVGGGNTFQLLKQCRERGLLAPITDVVKRGALYIGWS AGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTNALPEGHKGETREQRIRELLV VAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGEEAVPLEAGHRF >gi|223713531|gb|ACDM01000067.1| GENE 12 17287 - 18159 874 290 aa, chain + ## HITS:1 COG:yjbC KEGG:ns NR:ns ## COG: yjbC COG1187 # Protein_GI_number: 16131848 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1 290 1 290 290 518 100.0 1e-147 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR >gi|223713531|gb|ACDM01000067.1| GENE 13 18292 - 18564 350 90 aa, chain - ## HITS:1 COG:no KEGG:B21_03855 NR:ns ## KEGG: B21_03855 # Name: yjbD # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 90 1 90 90 120 100.0 2e-26 MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKK ARQLKKKQAYKPDPEASFSWSANTSTRGRR >gi|223713531|gb|ACDM01000067.1| GENE 14 18817 - 20166 1459 449 aa, chain - ## HITS:1 COG:lysC KEGG:ns NR:ns ## COG: lysC COG0527 # Protein_GI_number: 16131850 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1 449 1 449 449 786 99.0 0 MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER FEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGEL MSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVI TQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRI DEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTMVCNKTENPPLFR ALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTS TGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICY GASSHNLCFLVPGEDAEQVVQKLHSNLFE >gi|223713531|gb|ACDM01000067.1| GENE 15 20691 - 22340 1988 549 aa, chain + ## HITS:1 COG:ECs5008 KEGG:ns NR:ns ## COG: ECs5008 COG0166 # Protein_GI_number: 15834262 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1 549 1 549 549 1134 100.0 0 MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSATFDDQMLVDYSKNRITE ETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALRNRSNTPILVDGKDVMPEV NAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDLGPYMVTEALRPYKNHLNMHF VSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKAAGDEKHVAKHF AALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIVLSIGFDNFVELLSGAHAM DKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKY VDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNPLSDHHQKL LSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLDYVVPFKVFEGNRPTNSILLREITPF SLGALIALYEHKIFTQGVILNIFTFDQWGVELGKQLANRILPELKDDKEISSHDSSTNGL INRYKAWRG >gi|223713531|gb|ACDM01000067.1| GENE 16 22839 - 23081 185 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSATSVSTVSSAVGVALAA TGGGDGSNTGTTTTTTTSTQ >gi|223713531|gb|ACDM01000067.1| GENE 17 23195 - 23833 651 212 aa, chain + ## HITS:1 COG:no KEGG:JW5711 NR:ns ## KEGG: JW5711 # Name: yjbF # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1 212 1 212 212 415 100.0 1e-115 MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP QLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVD GASWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETPVRVLDEEVSTDQARWHNRY WIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ >gi|223713531|gb|ACDM01000067.1| GENE 18 23830 - 24567 535 245 aa, chain + ## HITS:1 COG:no KEGG:S3554 NR:ns ## KEGG: S3554 # Name: yjbG # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 245 1 245 245 447 98.0 1e-124 MIKQTIVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLIDLVGQPRLANSWWPGA VISEELATAAALRQQQALLTRLAEQGADSSADDAAAINALRQQIQALKVTGRQKINLDPD IVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQPFTPGRDVASYLSDQSLLSGA DRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVGLADSVWSETPDALNADILQTLT QRIPQ >gi|223713531|gb|ACDM01000067.1| GENE 19 24567 - 26663 2297 698 aa, chain + ## HITS:1 COG:no KEGG:JW3989 NR:ns ## KEGG: JW3989 # Name: yjbH # Def: predicted porin # Organism: E.coli_J # Pathway: not_defined # 1 698 1 698 698 1415 100.0 0 MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ HSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI KTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDK SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEV LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGP TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR >gi|223713531|gb|ACDM01000067.1| GENE 20 27258 - 27668 597 136 aa, chain + ## HITS:1 COG:yjbA KEGG:ns NR:ns ## COG: yjbA COG3223 # Protein_GI_number: 16131856 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 136 1 136 136 199 100.0 2e-51 MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLADVLFAPEQTSKYELVEG LVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKSPLDVLIYSAAILL LVITLWLCNSKRLKRE >gi|223713531|gb|ACDM01000067.1| GENE 21 27712 - 29187 1657 491 aa, chain - ## HITS:1 COG:ECs5014 KEGG:ns NR:ns ## COG: ECs5014 COG0477 # Protein_GI_number: 15834268 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 491 1 491 491 940 100.0 0 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFC VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPV YLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC VNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL RKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP ETKKTQQTATL >gi|223713531|gb|ACDM01000067.1| GENE 22 29559 - 30449 1108 296 aa, chain - ## HITS:1 COG:ECs5015 KEGG:ns NR:ns ## COG: ECs5015 COG3833 # Protein_GI_number: 15834269 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Escherichia coli O157:H7 # 1 296 1 296 296 519 100.0 1e-147 MAMVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWK LALGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKAT LLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGY FETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV NSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLTAGGVKG >gi|223713531|gb|ACDM01000067.1| GENE 23 30464 - 32008 1668 514 aa, chain - ## HITS:1 COG:malF KEGG:ns NR:ns ## COG: malF COG1175 # Protein_GI_number: 16131859 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1 514 1 514 514 978 100.0 0 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANR KAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTY NFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNR QALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSI TADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGM VLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPA WFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLP LLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGG GQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD >gi|223713531|gb|ACDM01000067.1| GENE 24 32162 - 33352 1460 396 aa, chain - ## HITS:1 COG:ECs5017 KEGG:ns NR:ns ## COG: ECs5017 COG2182 # Protein_GI_number: 15834271 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Escherichia coli O157:H7 # 1 396 1 396 396 764 100.0 0 MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW DAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAE AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIP QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK >gi|223713531|gb|ACDM01000067.1| GENE 25 33717 - 34832 1237 371 aa, chain + ## HITS:1 COG:ECs5018 KEGG:ns NR:ns ## COG: ECs5018 COG3839 # Protein_GI_number: 15834272 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 371 1 371 371 729 100.0 0 MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVIL EGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGT ACRRLHKEPGV >gi|223713531|gb|ACDM01000067.1| GENE 26 34907 - 36244 1493 445 aa, chain + ## HITS:1 COG:lamB KEGG:ns NR:ns ## COG: lamB COG4580 # Protein_GI_number: 16131862 # Func_class: G Carbohydrate transport and metabolism # Function: Maltoporin (phage lambda and maltose receptor) # Organism: Escherichia coli K12 # 1 445 2 446 446 849 100.0 0 MITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGN ECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLP GSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFA SNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFT AEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHG AISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRT GDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPA DFNGGSFGRGDSDEWTFGAQMEIWW >gi|223713531|gb|ACDM01000067.1| GENE 27 36487 - 37407 823 306 aa, chain + ## HITS:1 COG:no KEGG:B21_03869 NR:ns ## KEGG: B21_03869 # Name: malM # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 306 1 306 306 498 99.0 1e-139 MKMNKSLIVLCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQ TTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTP SAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKA YAKGVGNSIPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPA VAAPAPAPVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSISARSTFIS SVKGKG >gi|223713531|gb|ACDM01000067.1| GENE 28 37382 - 37534 56 50 aa, chain - ## HITS:1 COG:no KEGG:ECBD_3997 NR:ns ## KEGG: ECBD_3997 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 50 1 50 50 94 100.0 8e-19 MDILSEEEVSYYKKSLISQEGSIKKGAPGDAPVVAKSALWGVITPCLLHC >gi|223713531|gb|ACDM01000067.1| GENE 29 37678 - 37830 57 50 aa, chain + ## HITS:1 COG:ECs5021_1 KEGG:ns NR:ns ## COG: ECs5021_1 COG1357 # Protein_GI_number: 15834275 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli O157:H7 # 1 47 15 61 277 77 85.0 7e-15 MKHDVVQGNNIVDLDLLRNLNGVPGLNRDNFIYISNIFSNIKQRNEKIMQ >gi|223713531|gb|ACDM01000067.1| GENE 30 38347 - 39216 310 289 aa, chain + ## HITS:1 COG:yjbI_1 KEGG:ns NR:ns ## COG: yjbI_1 COG1357 # Protein_GI_number: 16131864 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli K12 # 1 95 154 248 248 187 100.0 3e-47 MFDYVRMSTGNFKDCITEQLELTIDYSDIFWNEDLDGYINNIIKMIDTLPDNAMILKSVL AVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPIIRSYIHSDEDNKFDDFMRQHRFSE VNFDTQQMIDFINRFNTNKWLIDKNNNFFIQLIDQALRSTDDMIKANVWHLYKEWIRSDD VSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNS TYIYKSRHEMLPVNLTQETLFSSKSHGKYALFPIFTASWRAHRIMNKGV >gi|223713531|gb|ACDM01000067.1| GENE 31 39439 - 39936 587 165 aa, chain + ## HITS:1 COG:ubiC KEGG:ns NR:ns ## COG: ubiC COG3161 # Protein_GI_number: 16131865 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate synthetase (chorismate lyase) # Organism: Escherichia coli K12 # 1 165 38 202 202 314 100.0 6e-86 MSHPALTQLRALRYCKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNE IPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLF TSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY >gi|223713531|gb|ACDM01000067.1| GENE 32 39949 - 40821 1090 290 aa, chain + ## HITS:1 COG:ECs5023 KEGG:ns NR:ns ## COG: ECs5023 COG0382 # Protein_GI_number: 15834277 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Escherichia coli O157:H7 # 1 290 1 290 290 513 100.0 1e-145 MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMR AAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTIL LSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWA VAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGILQIGVLALMAIIGELNGLGWGYY WSILVAGALFVYQQKLIANREREACFKAFMNNNYVGLVLFLGLAMSYWHF >gi|223713531|gb|ACDM01000067.1| GENE 33 40976 - 43459 2601 827 aa, chain - ## HITS:1 COG:plsB KEGG:ns NR:ns ## COG: plsB COG2937 # Protein_GI_number: 16131867 # Func_class: I Lipid transport and metabolism # Function: Glycerol-3-phosphate O-acyltransferase # Organism: Escherichia coli K12 # 1 827 1 827 827 1661 100.0 0 MTFCYPCRAFALLTRGFTSFMSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRP IMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEE SIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKL LASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQ GINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPA GPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTG TLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLR NLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAG AANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHAL QMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLME HVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLA AGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLV LTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLTIESATQGEG >gi|223713531|gb|ACDM01000067.1| GENE 34 43570 - 43938 434 122 aa, chain + ## HITS:1 COG:ECs5025 KEGG:ns NR:ns ## COG: ECs5025 COG0818 # Protein_GI_number: 15834279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Escherichia coli O157:H7 # 1 122 1 122 122 194 99.0 5e-50 MANNTTGFTRIIKAAGYSWNGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLI SSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSH FG >gi|223713531|gb|ACDM01000067.1| GENE 35 44048 - 44656 543 202 aa, chain + ## HITS:1 COG:ECs5026 KEGG:ns NR:ns ## COG: ECs5026 COG1974 # Protein_GI_number: 15834280 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 202 1 202 202 380 100.0 1e-106 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS GASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSM KDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVD LRQQSFTIEGLAVGVIRNGDWL >gi|223713531|gb|ACDM01000067.1| GENE 36 44729 - 46054 1347 441 aa, chain + ## HITS:1 COG:dinF KEGG:ns NR:ns ## COG: dinF COG0534 # Protein_GI_number: 16131870 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli K12 # 1 441 19 459 459 682 100.0 0 MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM LLLFLRMSTTGLTAQAYGAKNPQALARTLVQPLLLALGAGALIALLRTPIIDLALHIVGG SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLV MGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRD IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYG ARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVIL PVVGVWCYLLDGMFIGATRATEMRNSMAVAAAGFALTLLTLPWLGNHALWLALTVFLALR GLSLAAIWRRHWRNGTWFAAT >gi|223713531|gb|ACDM01000067.1| GENE 37 46170 - 46379 377 69 aa, chain + ## HITS:1 COG:ECs5028 KEGG:ns NR:ns ## COG: ECs5028 COG3237 # Protein_GI_number: 15834282 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 95 100.0 2e-20 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVD WETRNEYRW >gi|223713531|gb|ACDM01000067.1| GENE 38 46421 - 46936 499 171 aa, chain - ## HITS:1 COG:zur KEGG:ns NR:ns ## COG: zur COG0735 # Protein_GI_number: 16131872 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Escherichia coli K12 # 1 171 21 191 191 325 100.0 3e-89 MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLREAEPQAKP PTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDI MHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQHDHSVQVKKKPR >gi|223713531|gb|ACDM01000067.1| GENE 39 47254 - 47508 166 84 aa, chain + ## HITS:1 COG:no KEGG:SSON_4227 NR:ns ## KEGG: SSON_4227 # Name: yjbL # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 84 1 84 84 157 100.0 9e-38 MLKIIPGATGYFNKTLNSNQFDNEDAIKDKLDNRGSIKGKLNNIYGKSIDYAALRHRDII IAKIDLFIQRITHNLWHARKKMCF >gi|223713531|gb|ACDM01000067.1| GENE 40 47532 - 48239 346 235 aa, chain + ## HITS:1 COG:no KEGG:JW4008 NR:ns ## KEGG: JW4008 # Name: yjbM # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 235 1 235 235 425 100.0 1e-118 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN DLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSS AYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLV NEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK >gi|223713531|gb|ACDM01000067.1| GENE 41 48602 - 49639 1115 345 aa, chain + ## HITS:1 COG:ECs5031 KEGG:ns NR:ns ## COG: ECs5031 COG0042 # Protein_GI_number: 15834285 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli O157:H7 # 1 345 1 345 345 732 100.0 0 MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVT TGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGEC EMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHIT RHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR >gi|223713531|gb|ACDM01000067.1| GENE 42 49773 - 50015 411 80 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_4470 NR:ns ## KEGG: ECIAI39_4470 # Name: pspG # Def: phage shock protein G # Organism: E.coli_IAI39 # Pathway: not_defined # 1 80 71 150 150 128 98.0 8e-29 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV IKAIKAPKVPKYQRYDRWRY >gi|223713531|gb|ACDM01000067.1| GENE 43 50181 - 51164 829 327 aa, chain - ## HITS:1 COG:qor KEGG:ns NR:ns ## COG: qor COG0604 # Protein_GI_number: 16131877 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 327 1 327 327 629 100.0 1e-180 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS ALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN SSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQ KYPLKDAQRAHEILESRATQGSSLLIP >gi|223713531|gb|ACDM01000067.1| GENE 44 51247 - 52662 1603 471 aa, chain + ## HITS:1 COG:dnaB KEGG:ns NR:ns ## COG: dnaB COG0305 # Protein_GI_number: 16131878 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Escherichia coli K12 # 1 471 1 471 471 892 100.0 0 MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDF YTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANIS AYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPK NIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTF AMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGT MGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLE IAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR DEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE >gi|223713531|gb|ACDM01000067.1| GENE 45 52715 - 53794 993 359 aa, chain + ## HITS:1 COG:alr KEGG:ns NR:ns ## COG: alr COG0787 # Protein_GI_number: 16131879 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli K12 # 1 359 1 359 359 726 100.0 0 MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARL EEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVW MKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNT FCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGR VAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKYVD >gi|223713531|gb|ACDM01000067.1| GENE 46 54047 - 55240 1260 397 aa, chain + ## HITS:1 COG:tyrB KEGG:ns NR:ns ## COG: tyrB COG1448 # Protein_GI_number: 16131880 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 397 1 397 397 808 100.0 0 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHP CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN DEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD RLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM >gi|223713531|gb|ACDM01000067.1| GENE 47 55742 - 55984 182 80 aa, chain - ## HITS:1 COG:no KEGG:ECSE_4348 NR:ns ## KEGG: ECSE_4348 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 59 1 59 139 108 98.0 5e-23 MVINFITRDGDDDMNISYVNSNKTTSLPVELDALNNKDISYAKDFFLYIETQLKIAKDFL DLEKKYQVLLQVKFFTHLLI >gi|223713531|gb|ACDM01000067.1| GENE 48 56347 - 57060 528 237 aa, chain + ## HITS:1 COG:aphA KEGG:ns NR:ns ## COG: aphA COG3700 # Protein_GI_number: 16131881 # Func_class: R General function prediction only # Function: Acid phosphatase (class B) # Organism: Escherichia coli K12 # 1 237 1 237 237 473 100.0 1e-133 MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAG RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVAR QLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQW LQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY >gi|223713531|gb|ACDM01000067.1| GENE 49 57171 - 57587 375 138 aa, chain + ## HITS:1 COG:ECs5038 KEGG:ns NR:ns ## COG: ECs5038 COG0432 # Protein_GI_number: 15834292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 138 1 138 138 277 100.0 3e-75 MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQHTSASLTLNENCDPTVR HDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLG EHRIHGGSRRIIATLQGE >gi|223713531|gb|ACDM01000067.1| GENE 50 57591 - 57947 483 118 aa, chain + ## HITS:1 COG:ECs5039 KEGG:ns NR:ns ## COG: ECs5039 COG2315 # Protein_GI_number: 15834293 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 118 1 118 118 216 100.0 5e-57 MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELL RQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL >gi|223713531|gb|ACDM01000067.1| GENE 51 57982 - 60804 3182 940 aa, chain - ## HITS:1 COG:uvrA KEGG:ns NR:ns ## COG: uvrA COG0178 # Protein_GI_number: 16131884 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Escherichia coli K12 # 1 940 1 940 940 1900 100.0 0 MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML >gi|223713531|gb|ACDM01000067.1| GENE 52 61058 - 61594 735 178 aa, chain + ## HITS:1 COG:ECs5041 KEGG:ns NR:ns ## COG: ECs5041 COG0629 # Protein_GI_number: 15834295 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Escherichia coli O157:H7 # 1 178 1 178 178 270 100.0 1e-72 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF >gi|223713531|gb|ACDM01000067.1| GENE 53 61693 - 61974 262 93 aa, chain - ## HITS:1 COG:no KEGG:ECSE_4354 NR:ns ## KEGG: ECSE_4354 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 93 34 126 126 166 100.0 3e-40 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG ITMADITAIWHNIESVMIEEMNQTPPQWPMILT >gi|223713531|gb|ACDM01000067.1| GENE 54 62404 - 63990 1104 528 aa, chain + ## HITS:1 COG:yjcC KEGG:ns NR:ns ## COG: yjcC COG4943 # Protein_GI_number: 16131887 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Escherichia coli K12 # 1 528 1 528 528 1057 100.0 0 MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQA DLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAP ADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTV TKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFY NHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCI GAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSI NLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVA IDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEG VETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ >gi|223713531|gb|ACDM01000067.1| GENE 55 63993 - 64316 310 107 aa, chain - ## HITS:1 COG:ECs5044 KEGG:ns NR:ns ## COG: ECs5044 COG2207 # Protein_GI_number: 15834298 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 107 1 107 107 194 100.0 3e-50 MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHRL >gi|223713531|gb|ACDM01000067.1| GENE 56 64402 - 64866 498 154 aa, chain + ## HITS:1 COG:ECs5045 KEGG:ns NR:ns ## COG: ECs5045 COG0789 # Protein_GI_number: 15834299 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 154 1 154 154 301 100.0 2e-82 MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAII KIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI GCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN >gi|223713531|gb|ACDM01000067.1| GENE 57 65412 - 66761 1598 449 aa, chain + ## HITS:1 COG:ECs5046 KEGG:ns NR:ns ## COG: ECs5046 COG2252 # Protein_GI_number: 15834300 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli O157:H7 # 1 449 1 449 449 689 100.0 0 MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV FVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL FTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFA TFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENG NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALT TDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGY ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRL VSGEWRKLNIGTVVIAVALVTFYAGGWAI >gi|223713531|gb|ACDM01000067.1| GENE 58 66912 - 68561 1699 549 aa, chain + ## HITS:1 COG:ECs5047 KEGG:ns NR:ns ## COG: ECs5047 COG0025 # Protein_GI_number: 15834301 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Escherichia coli O157:H7 # 1 549 1 549 549 979 100.0 0 MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWPTFGLHVEFDPELFLVL FIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGFLIYWVVPGIPLIPAFALA AVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMIFTVGG ATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIG VSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILET SLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGWLWTMKKFSNRFLKKKPMEFGSWTTRE ILIASFAGVRGAITLAGVLSIPLLLPDGNVFPARYELVFLAAGVILFSLFVGVVMLPILL QHIEVADHSQQLKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGN LRRRADGRNDVESSVQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLL EALLIEENQ >gi|223713531|gb|ACDM01000067.1| GENE 59 68715 - 70007 416 430 aa, chain - ## HITS:1 COG:yjcF KEGG:ns NR:ns ## COG: yjcF COG1357 # Protein_GI_number: 16131892 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Escherichia coli K12 # 1 430 1 430 430 771 99.0 0 MRYNGLNNMFFPLCLINDNHSVTNPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEK VIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVS IKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQ DCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIK NTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQ NINLIDSKLFFTRLTNTFLEMVICTGSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLY RVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMK ITADIMQDAD >gi|223713531|gb|ACDM01000067.1| GENE 60 70185 - 71834 2204 549 aa, chain - ## HITS:1 COG:yjcG KEGG:ns NR:ns ## COG: yjcG COG4147 # Protein_GI_number: 16131893 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli K12 # 1 549 1 549 549 961 100.0 0 MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSR SDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFL IAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN YHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSE AMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFY ATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFI SAVAFATILAVVAGLTLAGASAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILG VLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMMGGWLGLITAVVLMILGP TIWVQILGHEKAIFPYEYPALFSITVAFLGIWFFSATDNSAEGARERELFRAQFIRSQTG FGVEQGRAH >gi|223713531|gb|ACDM01000067.1| GENE 61 71831 - 72145 378 104 aa, chain - ## HITS:1 COG:yjcH KEGG:ns NR:ns ## COG: yjcH COG3162 # Protein_GI_number: 16131894 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 104 1 104 104 199 100.0 1e-51 MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS >gi|223713531|gb|ACDM01000067.1| GENE 62 72104 - 72280 60 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRIVFYPLINSAIHHRFSRGNVGIVLIPAPLWEKVNARVTLAECRPDKAFTPHPAINA >gi|223713531|gb|ACDM01000067.1| GENE 63 72345 - 74303 2293 652 aa, chain - ## HITS:1 COG:acs KEGG:ns NR:ns ## COG: acs COG0365 # Protein_GI_number: 16131895 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Escherichia coli K12 # 1 652 1 652 652 1354 100.0 0 MSQIHKHTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSF APGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDASQSKHISYKELHRDVCRF ANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNS RLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDL VEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDI YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTA IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGG FMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQARTLFGD HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP KIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD SLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS >gi|223713531|gb|ACDM01000067.1| GENE 64 74696 - 76132 1577 478 aa, chain + ## HITS:1 COG:ECs5052 KEGG:ns NR:ns ## COG: ECs5052 COG3303 # Protein_GI_number: 15834306 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Escherichia coli O157:H7 # 1 478 1 478 478 972 100.0 0 MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNETFAPQHPDQYLSWKATS EQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVRETLRTGAPKNAEDGPLPM ACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPEFAKGKPELTL SRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQ YYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTD HKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQSINDLKIKVEDQLVHAHFEAKAALDA GATEAEMKPIQDDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGTAMDKAADARTKLARLL ATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGLLSQ >gi|223713531|gb|ACDM01000067.1| GENE 65 76177 - 76743 385 188 aa, chain + ## HITS:1 COG:no KEGG:G2583_4896 NR:ns ## KEGG: G2583_4896 # Name: nrfB # Def: NrfB, formate-dependent nitrite reductase # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 188 3 190 190 362 100.0 5e-99 MSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAACLDCHKPDTEGM HGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEPMYKVGEQNSVCMSCHLPE QLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRIKICVDCHSDQRTNPNFNPAS VPLLKEQP >gi|223713531|gb|ACDM01000067.1| GENE 66 76740 - 77411 428 223 aa, chain + ## HITS:1 COG:ECs5054 KEGG:ns NR:ns ## COG: ECs5054 COG0437 # Protein_GI_number: 15834308 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 223 1 223 223 446 100.0 1e-125 MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVN KVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVDVCPTGASFRDAASGIVDV NPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLQAGKLPACVEACPTKALTFG NLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKYGEVSQ >gi|223713531|gb|ACDM01000067.1| GENE 67 77408 - 78364 1254 318 aa, chain + ## HITS:1 COG:nrfD KEGG:ns NR:ns ## COG: nrfD COG3301 # Protein_GI_number: 16131899 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Escherichia coli K12 # 1 318 1 318 318 525 100.0 1e-149 MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVG PGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDL LALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPI LPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLA LGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLV GVLMLRFFILYAGQLTVA >gi|223713531|gb|ACDM01000067.1| GENE 68 78498 - 80102 1238 534 aa, chain + ## HITS:1 COG:nrfE KEGG:ns NR:ns ## COG: nrfE COG1138 # Protein_GI_number: 16131900 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1 534 19 552 552 912 100.0 0 MRLTCIGILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGS LLLWVLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAI EGRDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDGACARICWRWALPGW SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFCHWS LLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGWRARD GGPAVHFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNRATL PFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGVVVSSVSRQEISLNLQPGQQVT LAGYTFRFECLDLQAKGNYTSEKAIVALFDHQQRIGELTPERRFYEARRQQMMEPSIRWN GIHDWYAVMGEKTGPDRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWRGKKRDE >gi|223713531|gb|ACDM01000067.1| GENE 69 80095 - 80478 325 127 aa, chain + ## HITS:1 COG:nrfF KEGG:ns NR:ns ## COG: nrfF COG3088 # Protein_GI_number: 16131901 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Escherichia coli K12 # 1 127 1 127 127 188 100.0 2e-48 MNKGLLTLLLLFTCFAHAQVVDTWQFANPQQQQQALNIASQLRCPQCQNQNLLESNAPVA VSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLMALIL WRVRAKR >gi|223713531|gb|ACDM01000067.1| GENE 70 80475 - 81071 666 198 aa, chain + ## HITS:1 COG:nrfG KEGG:ns NR:ns ## COG: nrfG COG4235 # Protein_GI_number: 16131902 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1 198 1 198 198 328 100.0 5e-90 MKQPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVRAEYQRQRDPLHQFASQQTPEAQLQ ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRVNR TQLVESINMAKLLQRRLD >gi|223713531|gb|ACDM01000067.1| GENE 71 81413 - 82726 1736 437 aa, chain + ## HITS:1 COG:ECs5059 KEGG:ns NR:ns ## COG: ECs5059 COG1301 # Protein_GI_number: 15834313 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli O157:H7 # 1 437 1 437 437 751 100.0 0 MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIV ISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATV DISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPAT HREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFA ILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPASI TSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGV SFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKA LAYEREVLGKFDKTADQ >gi|223713531|gb|ACDM01000067.1| GENE 72 83031 - 83720 599 229 aa, chain - ## HITS:1 COG:ECs5060 KEGG:ns NR:ns ## COG: ECs5060 COG0790 # Protein_GI_number: 15834314 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 433 100.0 1e-121 MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQK AADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKP DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGY SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG >gi|223713531|gb|ACDM01000067.1| GENE 73 83814 - 85493 1815 559 aa, chain - ## HITS:1 COG:fdhF KEGG:ns NR:ns ## COG: fdhF COG0243 # Protein_GI_number: 16131905 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 559 157 715 715 1172 100.0 0 MSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHI ALKNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQN NVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVR AAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFT AADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGAT YEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMV LSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKII TRAQVSDRPNKGAIYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQ YVIDEYNKLKTRLREAALA >gi|223713531|gb|ACDM01000067.1| GENE 74 85542 - 85961 308 139 aa, chain - ## HITS:1 COG:ECs5061 KEGG:ns NR:ns ## COG: ECs5061 COG0243 # Protein_GI_number: 15834315 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli O157:H7 # 1 139 1 139 715 296 100.0 6e-81 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTP RLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVM QKFARAVIGTNNVDCCARV >gi|223713531|gb|ACDM01000067.1| GENE 75 86159 - 87625 1482 488 aa, chain - ## HITS:1 COG:yjcP KEGG:ns NR:ns ## COG: yjcP COG1538 # Protein_GI_number: 16131906 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Escherichia coli K12 # 1 488 1 488 488 890 100.0 0 MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQW WKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDAGSQLQVAALGMLNRQRVS ANGFLSPYSMDAPALGMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAAIGAHNAALAETA AVELSLATGVAQLYYSMQASYQMLDLLEQTHDVIDYAVKAHQSKVAHGLEAQVPFHGARA QILAVDKQIVAVKGQITETRESLRALIGAGASDMPEIRPVALPQVQTGIPATLSYELLAR RPDLQAMRWYVQASLDQVDSARALFYPSFDIKAFFGLDSIHLHTLFKKTSRQFNFIPGLK LPLFDGGRLNANLEGTRAASNMMIERYNQSVLNAVRDVAVNGTRLQTLNDEREMQAERVE ATRFTQRAAEAAYQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQSIQLMKSLGGGYQ AGPVVEKK >gi|223713531|gb|ACDM01000067.1| GENE 76 87622 - 89673 1488 683 aa, chain - ## HITS:1 COG:yjcQ KEGG:ns NR:ns ## COG: yjcQ COG1289 # Protein_GI_number: 16131907 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 48 683 1 636 636 1232 100.0 0 MSALNSLPLPVVRLLAFFHEELSERRPGRVPQTVQLWVGCLLVILISMTFEIPFVALSLA VLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEPLIRLIIAGPILMGCMFLM RTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPS RAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNVFCLADDANWRTQNAW WQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKLASEINKLQHAVAEGQCWQSDWRIS ESEAMAARECNLENICQTLLQLGQMDPNTPPTPAAKPPSMAADAFTNPDYMRYAVKTLLA CLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVM PWLDNIVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIR DRALGIIIGTVVSAVIYTFVWPESEARTLPQKLAGTLGMLSKVMRIPRQQEVTALRTYLQ IRIGLHAAFNACEEMCQRVALERQLDSEERALLIERSQTVIRQGRDLLHAWDATWNSAQA LDNALQPDRAGQFADALEKYAAGLATALSRSPQITLEETPASQAILPTLLKQEQHVCQLF ARLPDWTAPALTPATEQAQGATQ >gi|223713531|gb|ACDM01000067.1| GENE 77 89673 - 90704 1039 343 aa, chain - ## HITS:1 COG:yjcR KEGG:ns NR:ns ## COG: yjcR COG1566 # Protein_GI_number: 16131908 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 343 1 343 343 583 100.0 1e-166 MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIV ELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVN ATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAAS AVSGVDALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLI DTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGL PKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVANLEPQ >gi|223713531|gb|ACDM01000067.1| GENE 78 90723 - 90998 177 91 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A4328 NR:ns ## KEGG: EcHS_A4328 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 91 17 107 107 142 100.0 4e-33 MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRV IQRANINLAFVGIIYTALFALYAMLFWLAFF >gi|223713531|gb|ACDM01000067.1| GENE 79 91207 - 93192 2311 661 aa, chain - ## HITS:1 COG:yjcS KEGG:ns NR:ns ## COG: yjcS COG2015 # Protein_GI_number: 16131909 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alkyl sulfatase and related hydrolases # Organism: Escherichia coli K12 # 1 661 5 665 665 1328 100.0 0 MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVNQNYAKSLPFSDRQDFD DAQRGFIAPLLDEGILRDANGKVYYRADDYKFDINAAAPETVNPSLWRQSQINGISGLFK VTDKMYQVRGQDISNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRPQKPIVAVIYTH SHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISENVLAGNIMSRRALYSYGLLLPH NAQGNVGNGLGVTLATGDPSIIAPTKTIVRTGEKMIIDGLEFDFLMTPGSEAPAEMHFYI PALKALCTAENATHTLHNFYTLRGAKTRDTSKWTEYLNETLDMWGNDAEVLFMPHTWPVW GNKHINDYIGKYRDTIKYIHDQTLHLANQGYTMNEIGDMIKLPPALANNWASRGYYGSVS HNARAVYNFYLGYYDGNPANLHPYGQVEMGKRYVQALGGSARVINLAQEANKQGDYRWSA ELLKQVIAANPGDQVAKNLQANNFEQLGYQAESATWRGFYLTGAKELREGVHKFSHGTTG SPDTIRGMSVEMLFDFMAVRLDSAKAAGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQP QADASFYISREDLHAVLTGQAKMADLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTP N >gi|223713531|gb|ACDM01000067.1| GENE 80 93465 - 94394 574 309 aa, chain - ## HITS:1 COG:alsK KEGG:ns NR:ns ## COG: alsK COG1940 # Protein_GI_number: 16131910 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 1 309 1 309 309 649 100.0 0 MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRF NARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQL SWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGN PGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPD AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRF LPQFCAKAP >gi|223713531|gb|ACDM01000067.1| GENE 81 94378 - 95073 819 231 aa, chain - ## HITS:1 COG:alsE KEGG:ns NR:ns ## COG: alsE COG0036 # Protein_GI_number: 16131911 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Escherichia coli K12 # 1 231 1 231 231 473 100.0 1e-133 MKISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPL DCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVE AMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQAT YEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKSEVQPHAKTA >gi|223713531|gb|ACDM01000067.1| GENE 82 95084 - 96064 1083 326 aa, chain - ## HITS:1 COG:alsC KEGG:ns NR:ns ## COG: alsC COG1172 # Protein_GI_number: 16131912 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1 326 1 326 326 504 100.0 1e-143 MGFTTRVKSEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQS SVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALG AINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPV IFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGV VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ VQTYYQLVVMGGLIIAAVALDRLISK >gi|223713531|gb|ACDM01000067.1| GENE 83 96043 - 97575 175 510 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 279 494 25 222 309 72 25 1e-11 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG TITINNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWR EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE VDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRL MVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGS GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQ NMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA VFCEGRLTQILTNRDDMSEEEIMAWALPQE >gi|223713531|gb|ACDM01000067.1| GENE 84 97702 - 98637 939 311 aa, chain - ## HITS:1 COG:alsB KEGG:ns NR:ns ## COG: alsB COG1879 # Protein_GI_number: 16131914 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 311 1 311 311 561 100.0 1e-160 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE FKLVDSILVTQ >gi|223713531|gb|ACDM01000067.1| GENE 85 98696 - 99586 571 296 aa, chain - ## HITS:1 COG:rpiR KEGG:ns NR:ns ## COG: rpiR COG1737 # Protein_GI_number: 16131915 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 296 12 307 307 588 100.0 1e-168 MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVS EAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIM EGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMM MSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSP APETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK >gi|223713531|gb|ACDM01000067.1| GENE 86 99945 - 100394 324 149 aa, chain + ## HITS:1 COG:rpiB KEGG:ns NR:ns ## COG: rpiB COG0698 # Protein_GI_number: 16131916 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Escherichia coli K12 # 1 149 1 149 149 287 100.0 4e-78 MKKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVD GGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMI VDAWLGAQYEGGRHQQRVEAITAIEQRRN >gi|223713531|gb|ACDM01000067.1| GENE 87 100463 - 100792 230 109 aa, chain + ## HITS:1 COG:no KEGG:B21_03923 NR:ns ## KEGG: B21_03923 # Name: yjdP # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 109 1 109 109 79 99.0 5e-14 MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREV SDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR >gi|223713531|gb|ACDM01000067.1| GENE 88 100939 - 101697 628 252 aa, chain - ## HITS:1 COG:ECs5075 KEGG:ns NR:ns ## COG: ECs5075 COG1235 # Protein_GI_number: 15834329 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 516 96.0 1e-146 MSLTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL ADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFS HTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQ PQVMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF EVGFDGMEIGVA >gi|223713531|gb|ACDM01000067.1| GENE 89 101699 - 102133 523 144 aa, chain - ## HITS:1 COG:phnO KEGG:ns NR:ns ## COG: phnO COG0454 # Protein_GI_number: 16131919 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1 144 1 144 144 285 100.0 2e-77 MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRDPNMRYHLALLDGEVVG MIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVK RHDAHRFYLREGYEQSHFRFTKAL >gi|223713531|gb|ACDM01000067.1| GENE 90 102120 - 102677 478 185 aa, chain - ## HITS:1 COG:phnN KEGG:ns NR:ns ## COG: phnN COG3709 # Protein_GI_number: 16131920 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized component of phosphonate metabolism # Organism: Escherichia coli K12 # 1 185 1 185 185 358 100.0 3e-99 MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASAGSENHIALSEQEFFTR AGQNLLALSWHANGLYYGVGVEIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV SPEILRQRLENRGRENASEINARLARAARYTPQDCHTLNNDGSLRQSVDTLLTLIHQKEK HHACL >gi|223713531|gb|ACDM01000067.1| GENE 91 102677 - 103813 1143 378 aa, chain - ## HITS:1 COG:phnM KEGG:ns NR:ns ## COG: phnM COG3454 # Protein_GI_number: 16131921 # Func_class: P Inorganic ion transport and metabolism # Function: Metal-dependent hydrolase involved in phosphonate metabolism # Organism: Escherichia coli K12 # 1 378 1 378 378 742 99.0 0 MIINNVKLVLENEVVSGSLEVQNGEIRAFAESQSRLPEAMDGEGGWLLPGLIELHTDNLD KFFTPRPKVDWPAHSAMSSHDALMVASGITTVLDAVAIGDVRDGGDRLENLEKMINAIEE TQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLVSLMDHSPGQRQFANRKKYRE YYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAALCRARKIALASHDDATHAHVAES HQLGSVIAEFPTTFEAAEASRKHGMNVLMGAPNIVRGGSHSGNVAASELAQLGLLDILSS DYYPASLLDAAFRVADDQSNRFTLPQAVKLVTKNPAQALNLQDRGVIGEGKRADLVLAHR KDNHIHIDHVWRQGKRVF >gi|223713531|gb|ACDM01000067.1| GENE 92 103810 - 104490 223 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 219 1 209 245 90 29 3e-17 MINVQNVSKTFILHQQNGVRLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLP DEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGV PREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASL DAKNSAAVVELIREAKTRGAAIVGIFHDEAVRNDVADRLHPMGASS >gi|223713531|gb|ACDM01000067.1| GENE 93 104601 - 105359 376 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 19 251 36 267 329 149 35 6e-35 MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQG EIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGD IRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSV QARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHP YTQLLVSSVLQN >gi|223713531|gb|ACDM01000067.1| GENE 94 105356 - 106201 898 281 aa, chain - ## HITS:1 COG:phnJ KEGG:ns NR:ns ## COG: phnJ COG3627 # Protein_GI_number: 16131924 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1 281 1 281 281 575 100.0 1e-164 MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAKNQ >gi|223713531|gb|ACDM01000067.1| GENE 95 106194 - 107258 1230 354 aa, chain - ## HITS:1 COG:phnI KEGG:ns NR:ns ## COG: phnI COG3626 # Protein_GI_number: 16131925 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1 354 1 354 354 684 100.0 0 MYVAVKGGEKAIDAAHALQESRRRGDTDLPELSVAQIEQQLNLAVDRVMTEGGIADRELA ALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTGMRLERRISAVYKDIPGGQLLGP TYDYTHRLLDFTLLANGEAPTLTTADSEQQPSPHVFSLLARQGLAKFEEDSGAQPDDITR TPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRNHPFAGEIRSGYIDVSIVPEELG FAVNVGELLMTECEMVNGFIDPPGEPPHFTRGYGLVFGMSERKAMAMALVDRALQAPEYG EHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQQEQNHG >gi|223713531|gb|ACDM01000067.1| GENE 96 107258 - 107842 654 194 aa, chain - ## HITS:1 COG:phnH KEGG:ns NR:ns ## COG: phnH COG3625 # Protein_GI_number: 16131926 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1 194 1 194 194 355 100.0 2e-98 MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPLNIATTSVLLTLADNDT PVWLSTPLNNDIVNQSLRFHTNAPLVSQPEQATFAVTDEAISSEQLNALSTGTAVAPEAG ATLILQVASLSGGRMLRLTGAGIAEERMIAPQLPECILHELTERPHPFPLGIDLILTCGE RLLAIPRTTHVEVC >gi|223713531|gb|ACDM01000067.1| GENE 97 107839 - 108291 424 150 aa, chain - ## HITS:1 COG:phnG KEGG:ns NR:ns ## COG: phnG COG3624 # Protein_GI_number: 16131927 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1 150 1 150 150 261 99.0 4e-70 MHADTATRQHWMSVLAHSQPAELAARLNALNITADYEVIRAAETGLVQIQARMGGTGERF FAGDATLTRAAVRLTDGTLGYSWVQGRDKQHAERCALIDALMQQSRHFQNLSETLIAPLD ADRMTRIAARQAEVNASRVDFFTMVRGDNA >gi|223713531|gb|ACDM01000067.1| GENE 98 108292 - 109017 580 241 aa, chain - ## HITS:1 COG:phnF KEGG:ns NR:ns ## COG: phnF COG2188 # Protein_GI_number: 16131928 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 241 1 241 241 468 100.0 1e-132 MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRHTLRRAIDQLV EKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPTSEKLLSVLRPASGHVADA LGITEGENVIHLRTLRRVNGVALCLIDHYFADLTLWPTLQRFDSGSLHDFLREQTGIALR RSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTME H >gi|223713531|gb|ACDM01000067.1| GENE 99 109038 - 109406 391 122 aa, chain - ## HITS:1 COG:ECs5086 KEGG:ns NR:ns ## COG: ECs5086 COG3639 # Protein_GI_number: 15834340 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Escherichia coli O157:H7 # 1 122 155 276 276 229 99.0 6e-61 MLALFIHTTGVLSKLLSEAVEAIEPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLY RFESNVRSATVVGMVGAGGIGVTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKH FI >gi|223713531|gb|ACDM01000067.1| GENE 100 109256 - 109825 71 189 aa, chain - ## HITS:1 COG:phnE KEGG:ns NR:ns ## COG: phnE COG3639 # Protein_GI_number: 16131930 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Escherichia coli K12 # 1 189 18 206 206 322 99.0 3e-88 MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDGGNMATFAADFFPPDFS QWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWWVYQPVRRLMDACRAINEM VFAMLFVVAVGLGPFAGVLACWRCLSTPPACSPSCFPKRWKRLNPARWKAFAPPVPTSSK RSSTACCHR >gi|223713531|gb|ACDM01000067.1| GENE 101 109931 - 110947 1126 338 aa, chain - ## HITS:1 COG:phnD KEGG:ns NR:ns ## COG: phnD COG3221 # Protein_GI_number: 16131931 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 338 1 338 338 642 100.0 0 MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKK LGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYW SVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVN AGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLS ETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASSDLQLVPIRQLALFKEMQGVKSNKG LNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVSKAVQ >gi|223713531|gb|ACDM01000067.1| GENE 102 110972 - 111760 264 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 231 1 214 305 106 31 6e-22 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSV GSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRT CFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF DNERFDHLYRSINRVEENAKAA >gi|223713531|gb|ACDM01000067.1| GENE 103 111893 - 112336 545 147 aa, chain - ## HITS:1 COG:phnB KEGG:ns NR:ns ## COG: phnB COG2764 # Protein_GI_number: 16131933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 147 1 147 147 295 100.0 1e-80 MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDSAENCPSGMQFPDTAIA HANVRIAGSDIMMSDAMPSGKASYSGFTLVLDSQQVEEGKRWFDNLAANGKIEMAWQETF WAHGFGKVTDKFGVPWMINVVKQQPTQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:17:31 2011 Seq name: gi|223713530|gb|ACDM01000068.1| Escherichia sp. 4_1_40B cont1.68, whole genome shotgun sequence Length of sequence - 36245 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 20, operones - 8 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 689 - 748 8.7 2 2 Op 1 . + CDS 772 - 3000 1878 ## COG0699 Predicted GTPases (dynamin-related) 3 2 Op 2 . + CDS 2997 - 3875 478 ## JW5729 conserved hypothetical protein + Prom 3898 - 3957 2.9 4 3 Tu 1 . + CDS 4139 - 5641 1686 ## COG0477 Permeases of the major facilitator superfamily + Prom 5672 - 5731 1.6 5 4 Tu 1 . + CDS 5753 - 5842 115 ## 6 5 Op 1 40/0.000 - CDS 5818 - 6909 893 ## COG0642 Signal transduction histidine kinase 7 5 Op 2 3/1.000 - CDS 6919 - 7587 980 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 8 5 Op 3 3/1.000 - CDS 7584 - 9227 1432 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase - Term 9262 - 9309 8.2 9 6 Op 1 . - CDS 9331 - 10668 1476 ## COG0531 Amino acid transporters - Prom 10709 - 10768 3.9 10 6 Op 2 . - CDS 10805 - 11566 372 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 11632 - 11691 5.7 - Term 11742 - 11773 1.1 11 7 Tu 1 . - CDS 11891 - 14158 2249 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 14280 - 14339 7.2 12 8 Tu 1 . - CDS 14357 - 15265 804 ## COG2207 AraC-type DNA-binding domain-containing proteins 13 9 Tu 1 4/0.333 + CDS 15551 - 16903 1237 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 14 10 Tu 1 . + CDS 17018 - 18427 1053 ## COG2211 Na+/melibiose symporter and related transporters + Term 18450 - 18491 6.1 15 11 Tu 1 . - CDS 18566 - 19195 567 ## COG3647 Predicted membrane protein - Prom 19218 - 19277 2.5 16 12 Op 1 4/0.333 - CDS 19318 - 20964 503 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase - Term 20991 - 21032 6.0 17 12 Op 2 3/1.000 - CDS 21042 - 22382 1488 ## COG2704 Anaerobic C4-dicarboxylate transporter 18 13 Op 1 9/0.000 - CDS 22953 - 23672 278 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 19 13 Op 2 . - CDS 23669 - 25300 1423 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 25324 - 25383 2.9 20 14 Op 1 . + CDS 25292 - 25426 66 ## EcSMS35_4593 hypothetical protein 21 14 Op 2 5/0.333 + CDS 25481 - 25711 231 ## COG3592 Uncharacterized conserved protein 22 14 Op 3 . + CDS 25723 - 25995 354 ## COG2388 Predicted acetyltransferase 23 15 Tu 1 . - CDS 25925 - 26116 111 ## gi|293407852|ref|ZP_06651692.1| predicted protein - Prom 26212 - 26271 3.3 + Prom 26074 - 26133 1.7 24 16 Op 1 . + CDS 26222 - 26518 212 ## ECUMN_4661 hypothetical protein 25 16 Op 2 . + CDS 26546 - 26719 184 ## ECH74115_5644 hypothetical protein + Term 26798 - 26833 6.7 - Term 26786 - 26821 6.7 26 17 Tu 1 . - CDS 26838 - 28355 1672 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 28438 - 28497 6.5 27 18 Tu 1 4/0.333 - CDS 28592 - 30049 1393 ## COG3104 Dipeptide/tripeptide permease - Term 30057 - 30100 6.3 28 19 Op 1 10/0.000 - CDS 30108 - 32255 2496 ## COG1982 Arginine/lysine/ornithine decarboxylases - Term 32264 - 32319 3.0 29 19 Op 2 4/0.333 - CDS 32335 - 33669 1496 ## COG0531 Amino acid transporters - Term 33994 - 34028 -1.0 30 20 Tu 1 . - CDS 34034 - 35572 792 ## COG3710 DNA-binding winged-HTH domains - Prom 35598 - 35657 3.8 Predicted protein(s) >gi|223713530|gb|ACDM01000068.1| GENE 1 36 - 371 456 111 aa, chain - ## HITS:1 COG:ECs5090 KEGG:ns NR:ns ## COG: ECs5090 COG2824 # Protein_GI_number: 15834344 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Escherichia coli O157:H7 # 1 111 1 111 111 216 100.0 8e-57 MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI IKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN >gi|223713530|gb|ACDM01000068.1| GENE 2 772 - 3000 1878 742 aa, chain + ## HITS:1 COG:yjdA_1 KEGG:ns NR:ns ## COG: yjdA_1 COG0699 # Protein_GI_number: 16131935 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Escherichia coli K12 # 1 275 1 275 275 512 100.0 1e-145 MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLALPWSQPNIAERHAMLNN ELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVL HFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPI FHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGP NEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD QQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLPPPEQQ RWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALR SAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQIEESLQLLQLNQAQVSGEIKHEI ELALTSANHFLRQQQDALKVQLAALFQDDSEPLSEIRTRCETLLQTAQNTISRDFTLRFA ELESTLCRVLTDVIRPIEQQVKMELSESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQE ATDEQSTRLGVVRETFSRWLNQPDWGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKV LAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHG WIYTDAQLLRDDIQTLFTAERY >gi|223713530|gb|ACDM01000068.1| GENE 3 2997 - 3875 478 292 aa, chain + ## HITS:1 COG:no KEGG:JW5729 NR:ns ## KEGG: JW5729 # Name: yjcZ # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 292 1 292 292 558 100.0 1e-158 MTKTLLDGPGRVLESVYPRFLVDLAQGDDARLPQAHQQQFRERLMQELLSRVQLQTWTNG GMLNAPLSLRLTLVEKLASMLDPGHLALTQIAQHLALLQKMDHRQHSAFPELPQQIAALY EWFSARCRWKEKALTQRGLLVQAGDQSEQIFTRWRAGAYNAWSLPGRCFIVLEELRWGAF GDACRLGSPQAVALLLGDLLEKATQHLAESINAAPTTRHYYHQWFASSTVPTGGEHADFL SWLGKWTTADKQPVCWSVTQRWQTVALGMPRLCSAQRLAGAMLEEIFSVNLA >gi|223713530|gb|ACDM01000068.1| GENE 4 4139 - 5641 1686 500 aa, chain + ## HITS:1 COG:ECs5093 KEGG:ns NR:ns ## COG: ECs5093 COG0477 # Protein_GI_number: 15834347 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 500 1 500 500 977 100.0 0 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGAD PSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYD TIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDRE GLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLI IIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLM LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMP AYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHE IADLQAKRTRLVQQHPRIDE >gi|223713530|gb|ACDM01000068.1| GENE 5 5753 - 5842 115 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNRVYESLTTVFSVLVVSSFLYIWFATY >gi|223713530|gb|ACDM01000068.1| GENE 6 5818 - 6909 893 363 aa, chain - ## HITS:1 COG:basS KEGG:ns NR:ns ## COG: basS COG0642 # Protein_GI_number: 16131938 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 363 1 363 363 681 100.0 0 MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMR EIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTADNLTPIAIHSATL EIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLV ARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPE SAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESK CGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVA NQI >gi|223713530|gb|ACDM01000068.1| GENE 7 6919 - 7587 980 222 aa, chain - ## HITS:1 COG:ECs5095 KEGG:ns NR:ns ## COG: ECs5095 COG0745 # Protein_GI_number: 15834349 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 432 100.0 1e-121 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN >gi|223713530|gb|ACDM01000068.1| GENE 8 7584 - 9227 1432 547 aa, chain - ## HITS:1 COG:ZyjdB KEGG:ns NR:ns ## COG: ZyjdB COG2194 # Protein_GI_number: 15804706 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli O157:H7 EDL933 # 1 547 11 557 557 1083 100.0 0 MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDSLHNVLVFLSMPVVAFS VINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDRSMIANIIDTTPAESYALM TPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGANILVSVLLILLVAALFYKDYA SLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVRIGEDAHRNPLMQNEKRKNLTIL IVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTASCGTATAVSVPCMFSDMPREHYKE ELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACDRVPHQNVTALNLPDQCINGECYDEVL FHGLEEYINNLQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCDTNEIQTCTKEQLVNT YDNTLVYVDYIVDKAINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLPYAIAPDSQK QVPMLLWLSEDYQKRYQVDQNCLQKQAQTQHYSQDNLFSTLLGLTGVETKYYQAADDILQ TCRRVSE >gi|223713530|gb|ACDM01000068.1| GENE 9 9331 - 10668 1476 445 aa, chain - ## HITS:1 COG:ECs5097 KEGG:ns NR:ns ## COG: ECs5097 COG0531 # Protein_GI_number: 15834351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 445 1 445 445 780 100.0 0 MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVY AKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT AKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF TLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVI TAMYALNYNRLHKNPYPLDAPISKD >gi|223713530|gb|ACDM01000068.1| GENE 10 10805 - 11566 372 253 aa, chain - ## HITS:1 COG:adiY KEGG:ns NR:ns ## COG: adiY COG2207 # Protein_GI_number: 16131942 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 253 1 253 253 493 100.0 1e-139 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP LHYVSQHRERTVA >gi|223713530|gb|ACDM01000068.1| GENE 11 11891 - 14158 2249 755 aa, chain - ## HITS:1 COG:adiA KEGG:ns NR:ns ## COG: adiA COG1982 # Protein_GI_number: 16131943 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1 755 2 756 756 1602 100.0 0 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFS YQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTA DFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDY YGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA CMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKIS ESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHAT TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWN KEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILA PGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS FKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPV AEVTPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSY LRSLQSWDHHFPGFEHETEGTEIIDGIYHVMCVKA >gi|223713530|gb|ACDM01000068.1| GENE 12 14357 - 15265 804 302 aa, chain - ## HITS:1 COG:melR KEGG:ns NR:ns ## COG: melR COG2207 # Protein_GI_number: 16131944 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 302 1 302 302 610 100.0 1e-174 MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWHGQVEVNVPFDGDVEYL INNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHLFLSWPLDKDLINHVTHGM VIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLMLKRFSLSGWEPILVNKTSRT HKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI TAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRKLSQQRRQTF PG >gi|223713530|gb|ACDM01000068.1| GENE 13 15551 - 16903 1237 450 aa, chain + ## HITS:1 COG:melA KEGG:ns NR:ns ## COG: melA COG1486 # Protein_GI_number: 16131945 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1 450 2 451 451 959 100.0 0 MSAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAG ASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIM RALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAE ELARDLNIDPATLRYRCAGINHMAFYLELERKTADGSYVNLYPELLAAYEAGQAPKPNIH GNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIERYKVPLDEYPKRCVE QLANWHKELEEYKKASRIDIKPSREYASTIMNAIWTGEPSVIYGNVRNDGLIDNLPQGCC VEVACLVDANGIQPTKVGTLPSHLAALMQTNINVQTLLTEAILTENRDRVYHAAMMDPHT AAVLGIDEIYALVDDLIAAHGDWLPGWLHR >gi|223713530|gb|ACDM01000068.1| GENE 14 17018 - 18427 1053 469 aa, chain + ## HITS:1 COG:melB KEGG:ns NR:ns ## COG: melB COG2211 # Protein_GI_number: 16131946 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1 469 1 469 469 855 100.0 0 MTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGW IVNATRSRWGKFKPWILIGTLANSVILFLLFSAHLFEGTTQIVFVCVTYILWGMTYTIMD IPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTLPFVNYVGGGDRGFGFQMFTL VLIAFFIVSTIITLRNVHEVFSSDNQPSAEGSHLTLKAIVALIYKNDQLSCLLGMALAYN VASNIITGFAIYYFSYVIGDADLFPYYLSYAGAANLVTLVFFPRLVKSLSRRILWAGASI LPVLSCGVLLLMALMSYHNVVLIVIAGILLNVGTALFWVLQVIMVADIVDYGEYKLHVRC ESIAYSVQTMVVKGGSAFAAFFIAVVLGMIGYVPNVEQSTQALLGMQFIMIALPTLFFMV TLILYFRFYRLNGDTLRRIQIHLLDKYRKVPPEPVHADIPVGAVSDVKA >gi|223713530|gb|ACDM01000068.1| GENE 15 18566 - 19195 567 209 aa, chain - ## HITS:1 COG:yjdF KEGG:ns NR:ns ## COG: yjdF COG3647 # Protein_GI_number: 16131947 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 209 1 209 209 392 100.0 1e-109 MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPL LYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREIL VRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMF CALLGALTTVIFLARFHCRQLRRFGLITG >gi|223713530|gb|ACDM01000068.1| GENE 16 19318 - 20964 503 548 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 69 531 31 482 508 198 31 4e-50 MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEPEALTLLAQQAFHDASF MLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQR VWTGGGDEETLSKGVYNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKF LCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAET NLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQELLEEAQKLGLGAQFGGKYFAHDIRV IRLPRHGASCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVK VDLNRPMKEILAQLSQYPVSTRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIY YAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGF YLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIVN KQCANCTK >gi|223713530|gb|ACDM01000068.1| GENE 17 21042 - 22382 1488 446 aa, chain - ## HITS:1 COG:ECs5105 KEGG:ns NR:ns ## COG: ECs5105 COG2704 # Protein_GI_number: 15834359 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 446 1 446 446 743 100.0 0 MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVA ASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDV AIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIP STLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMW IFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEV FRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAA ALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHS FILPGLIGVSVSCVFGWIFAAMYGFL >gi|223713530|gb|ACDM01000068.1| GENE 18 22953 - 23672 278 239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 2 225 1 222 226 111 36 5e-24 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ >gi|223713530|gb|ACDM01000068.1| GENE 19 23669 - 25300 1423 543 aa, chain - ## HITS:1 COG:ECs5107 KEGG:ns NR:ns ## COG: ECs5107 COG3290 # Protein_GI_number: 15834361 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Escherichia coli O157:H7 # 1 543 1 543 543 1072 100.0 0 MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRDGLANKALAVA RTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEAQRIGQPF KGDDILKALNGEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQINDSR WSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEISTLFEQRQAMLQSIKEGVVAVDD RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRL LLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRLDGLVNYADALRERSHEFMNKLHVILG LLHLKSYKQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLISKINRATDLGHTLILNSE SQLPDSGSEDQVATLITTLGNLIENALEALGPEPGGEISVTLHYRHGWLHCEVNDDGPGI APDKIDHIFDKGVSTKGSERGVGLALVKQQVENLGGSIAVESEPGIFTQFFVQIPWDGER SNR >gi|223713530|gb|ACDM01000068.1| GENE 20 25292 - 25426 66 44 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_4593 NR:ns ## KEGG: EcSMS35_4593 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 44 1 44 44 79 100.0 3e-14 MSHQLPCVTNFLSIISDEAGNSKGVRMIGYIGEETLATETASAV >gi|223713530|gb|ACDM01000068.1| GENE 21 25481 - 25711 231 76 aa, chain + ## HITS:1 COG:ECs5108 KEGG:ns NR:ns ## COG: ECs5108 COG3592 # Protein_GI_number: 15834362 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 76 1 76 76 162 100.0 1e-40 MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVV KVIDTCPSGALKYRHK >gi|223713530|gb|ACDM01000068.1| GENE 22 25723 - 25995 354 90 aa, chain + ## HITS:1 COG:yjdJ KEGG:ns NR:ns ## COG: yjdJ COG2388 # Protein_GI_number: 16131953 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli K12 # 1 90 1 90 90 163 100.0 7e-41 MEIREGHNKFYINDKQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEK MRREKRKIIPLCPFAKHEFDKTREYDDIRS >gi|223713530|gb|ACDM01000068.1| GENE 23 25925 - 26116 111 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293407852|ref|ZP_06651692.1| ## NR: gi|293407852|ref|ZP_06651692.1| predicted protein [Escherichia coli B354] # 1 63 1 63 63 104 85.0 2e-21 MTWDKKTRSLPILCASPYPSDALLHHIAERMKNIVTLYSPINCEYHHTPAFYQIHVSQMG IMG >gi|223713530|gb|ACDM01000068.1| GENE 24 26222 - 26518 212 98 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_4661 NR:ns ## KEGG: ECUMN_4661 # Name: yjdK # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 98 1 98 98 172 100.0 3e-42 MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTS LAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK >gi|223713530|gb|ACDM01000068.1| GENE 25 26546 - 26719 184 57 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_5644 NR:ns ## KEGG: ECH74115_5644 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 57 1 57 57 68 100.0 6e-11 MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF >gi|223713530|gb|ACDM01000068.1| GENE 26 26838 - 28355 1672 505 aa, chain - ## HITS:1 COG:ECs5111 KEGG:ns NR:ns ## COG: ECs5111 COG1190 # Protein_GI_number: 15834365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Escherichia coli O157:H7 # 1 505 1 505 505 998 99.0 0 MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQE LESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD IIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKS RQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT LAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGI TVEKSWGLGRIVTEIFDEVAEVHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGID RMIMLFTNSHTIRDVILFPAMRPQK >gi|223713530|gb|ACDM01000068.1| GENE 27 28592 - 30049 1393 485 aa, chain - ## HITS:1 COG:yjdL KEGG:ns NR:ns ## COG: yjdL COG3104 # Protein_GI_number: 16131956 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1 485 1 485 485 889 100.0 0 MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVT PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSLYLALAIIICGYGLFKSNI SCLLGELYDENDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIG LLIFLSGHRHFQSTRSMDKKALTSVKFALPVWSWLVVMLCLAPVFFTLLLENDWSGYLLA IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQA FNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSTLRVWLKFAFGLLLMACGFMLLA FDARHAAADGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVA NWLAGVVAQQTTESQISGMAIAAYQRFFSQMGEWTLACVAIIVVLAFATRFLFSTPTNMI QESND >gi|223713530|gb|ACDM01000068.1| GENE 28 30108 - 32255 2496 715 aa, chain - ## HITS:1 COG:ECs5113 KEGG:ns NR:ns ## COG: ECs5113 COG1982 # Protein_GI_number: 15834367 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli O157:H7 # 1 715 1 715 715 1494 100.0 0 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWD KYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQT TDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDI SISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILI DRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVH AVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIY ETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNA GKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID NEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIG IDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHH NLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVM PGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKEESKK >gi|223713530|gb|ACDM01000068.1| GENE 29 32335 - 33669 1496 444 aa, chain - ## HITS:1 COG:ECs5114 KEGG:ns NR:ns ## COG: ECs5114 COG0531 # Protein_GI_number: 15834368 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 444 1 444 444 761 100.0 0 MSSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWIISIIGAMSLAYVYARL ATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPVP AGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVMTAIVGWHWFDAATYAANWNT ADTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIVYIAATQ VLSGMYPSSVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRA ANDGNFPKVYGEVDSNGIPKKGLLLAAVKMTALMILITLMNSAGGKASDLFGELTGIAVL LTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMGASSFELAGTFIVSLIIL MFYARKMHERQSHSMDNHTASNAH >gi|223713530|gb|ACDM01000068.1| GENE 30 34034 - 35572 792 512 aa, chain - ## HITS:1 COG:cadC_1 KEGG:ns NR:ns ## COG: cadC_1 COG3710 # Protein_GI_number: 16131959 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Escherichia coli K12 # 1 180 1 180 180 328 100.0 2e-89 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR PGANTLYWIENGIFQTSVPYVVPYLDKFLASE Prediction of potential genes in microbial genomes Time: Mon May 16 19:17:57 2011 Seq name: gi|223713529|gb|ACDM01000069.1| Escherichia sp. 4_1_40B cont1.69, whole genome shotgun sequence Length of sequence - 29216 bp Number of predicted genes - 31, with homology - 30 Number of transcription units - 13, operones - 7 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 341 270 ## EC55989_3367 hypothetical protein 2 1 Op 2 . - CDS 338 - 715 318 ## EC55989_3366 toxin of the YeeV-YeeU toxin-antitoxin system 3 1 Op 3 . - CDS 762 - 1139 177 ## EC55989_3365 antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage 4 1 Op 4 . - CDS 1219 - 1440 359 ## S3202 hypothetical protein - Prom 1604 - 1663 5.1 5 2 Op 1 . + CDS 1648 - 2244 392 ## EC55989_3330 hypothetical protein 6 2 Op 2 . + CDS 2264 - 2941 369 ## EC55989_3328 Conserved hypothetical protein. putative exported protein 7 2 Op 3 . + CDS 2973 - 3239 137 ## COG4104 Uncharacterized conserved protein 8 2 Op 4 . + CDS 3297 - 4391 511 ## EC55989_3326 hypothetical protein 9 2 Op 5 . + CDS 4384 - 6576 848 ## COG3523 Uncharacterized protein conserved in bacteria 10 2 Op 6 1/0.000 + CDS 6557 - 7093 351 ## COG3521 Uncharacterized protein conserved in bacteria 11 2 Op 7 . + CDS 7096 - 7527 393 ## COG3518 Uncharacterized protein conserved in bacteria + Prom 7551 - 7610 4.2 12 3 Tu 1 . + CDS 7684 - 8085 109 ## EC55989_3318 hypothetical protein + Prom 8127 - 8186 2.1 13 4 Tu 1 . + CDS 8241 - 8741 263 ## EC55989_3317 hypothetical protein + Term 8774 - 8815 0.2 + Prom 9017 - 9076 4.5 14 5 Op 1 6/0.000 + CDS 9268 - 9744 234 ## COG3516 Uncharacterized protein conserved in bacteria 15 5 Op 2 . + CDS 9747 - 11225 607 ## COG3517 Uncharacterized protein conserved in bacteria + Term 11258 - 11286 -0.9 + Prom 11442 - 11501 5.3 16 6 Op 1 . + CDS 11571 - 11741 116 ## EC55989_3296 hypothetical protein 17 6 Op 2 . + CDS 11751 - 12173 195 ## EC55989_3295 hypothetical protein 18 6 Op 3 9/0.000 + CDS 12166 - 13968 347 ## COG3519 Uncharacterized protein conserved in bacteria 19 6 Op 4 . + CDS 13959 - 14891 306 ## COG3520 Uncharacterized protein conserved in bacteria + Prom 15298 - 15357 3.8 20 7 Op 1 . + CDS 15471 - 16886 365 ## COG3501 Uncharacterized protein conserved in bacteria 21 7 Op 2 . + CDS 16897 - 17364 180 ## EC55989_3291 hypothetical protein 22 7 Op 3 . + CDS 17374 - 17673 84 ## COG4104 Uncharacterized conserved protein 23 7 Op 4 . + CDS 17677 - 18753 331 ## COG3515 Uncharacterized protein conserved in bacteria + Prom 18783 - 18842 4.4 24 8 Tu 1 . + CDS 19004 - 19312 245 ## EC55989_3288 conserved hypothetical protein; putative exported protein + Prom 19492 - 19551 3.8 25 9 Tu 1 . + CDS 19739 - 20743 -23 ## COG3522 Uncharacterized protein conserved in bacteria + Term 20982 - 21028 4.3 + Prom 20986 - 21045 5.7 26 10 Tu 1 . + CDS 21082 - 21672 105 ## COG3455 Uncharacterized protein conserved in bacteria - Term 22202 - 22226 -1.0 27 11 Tu 1 . - CDS 22415 - 22630 125 ## + Prom 22976 - 23035 4.3 28 12 Op 1 . + CDS 23109 - 25082 668 ## EC55989_3284 conserved hypothetical protein; putative exported protein 29 12 Op 2 . + CDS 25086 - 27635 1142 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 27692 - 27740 1.4 + Prom 28123 - 28182 1.7 30 13 Op 1 11/0.000 + CDS 28423 - 28641 193 ## COG2801 Transposase and inactivated derivatives 31 13 Op 2 . + CDS 28657 - 29043 377 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|223713529|gb|ACDM01000069.1| GENE 1 2 - 341 270 113 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3367 NR:ns ## KEGG: EC55989_3367 # Name: yeeW # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 113 1 113 140 196 100.0 2e-49 MKLALTLEADSINAQALNMGRIVVDVDGIELAELINKVAENGYSLRVVNERDATETPATS ASPHQLPEDNTVIQSVMPLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDS >gi|223713529|gb|ACDM01000069.1| GENE 2 338 - 715 318 125 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3366 NR:ns ## KEGG: EC55989_3366 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system # Organism: E.coli_55989 # Pathway: not_defined # 1 125 36 160 160 257 100.0 7e-68 MNTLPDTHVREASGCPSPITIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLC DAVNFLVEKYALVRTDQPGFSAGAPSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH PGAKQ >gi|223713529|gb|ACDM01000069.1| GENE 3 762 - 1139 177 125 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3365 NR:ns ## KEGG: EC55989_3365 # Name: yeeU # Def: antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_55989 # Pathway: not_defined # 1 125 1 125 125 251 100.0 4e-66 MSDTLPGTTPPDDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAY HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA PATTV >gi|223713529|gb|ACDM01000069.1| GENE 4 1219 - 1440 359 73 aa, chain - ## HITS:1 COG:no KEGG:S3202 NR:ns ## KEGG: S3202 # Name: yeeT # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 73 1 73 73 149 100.0 4e-35 MKIITRGEAMRIHRQHPASRLFPFCTGKYRWHGSTDTYTGREVQDIPGVLAVFAERRKDS FGPYVRLMSVTLN >gi|223713529|gb|ACDM01000069.1| GENE 5 1648 - 2244 392 198 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3330 NR:ns ## KEGG: EC55989_3330 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 198 363 560 560 422 100.0 1e-117 MTLPALKHILPHGKLTTKIRSIGVNNSNQRRAGVIQKQVGAAVFFERMAVPNDWANVCLR VMLDAAQEAGVLFEPIRQTNTELQLPSELIFLADKAIAQGKAVRLGQEPQAFTEEELYII GKYTHCSANWNIESDGNLWVDPTTGEIFIHRFGPKGNKAFVFPNKPNDRWIRSVWYMDDQ QRLNDNAVKNTKVMMSGV >gi|223713529|gb|ACDM01000069.1| GENE 6 2264 - 2941 369 225 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3328 NR:ns ## KEGG: EC55989_3328 # Name: not_defined # Def: Conserved hypothetical protein. putative exported protein # Organism: E.coli_55989 # Pathway: not_defined # 1 225 1 225 225 451 99.0 1e-125 MTRDKIIFIAPLLALLTGCNSVSSRYADLDKTEWGYKKLPYDEWKFLFIYPKALPALATQ ALMVDGEGYKTTYQYLDNTEPSQVSVGRWNDHLGATESYYNKGKALPLMLRFCWDSIIDK KSYETLIFFKKGTWEQMVTPYADNRWNETYYRSTMIIGLAPEGKVRVWLGDRGNPVVPQL DAKITTVSGDKMKMCKGVTKHPDGYVYYGDTPDFIKGKIYPYGNW >gi|223713529|gb|ACDM01000069.1| GENE 7 2973 - 3239 137 88 aa, chain + ## HITS:1 COG:RSp0765 KEGG:ns NR:ns ## COG: RSp0765 COG4104 # Protein_GI_number: 17548986 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 81 1 82 89 63 48.0 1e-10 MSKGFVLLGDNTTHGGKVISASSTMIVDGKKVALVGDMVSCPVSGHGTNPIVEGSPEWIS DGRAVVIDGCKCLCGCKVISSAPECAIG >gi|223713529|gb|ACDM01000069.1| GENE 8 3297 - 4391 511 364 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3326 NR:ns ## KEGG: EC55989_3326 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 364 19 382 382 743 100.0 0 MMLWFMTGAFMAVVGALLFIIRASEYVKALNNFSIWWLALTPPGCWFFLFCLRHWQWSNQ MDEHLFLKKEGEYAQKQWESWAERYLVITASCVYLPDKITVATLCDELPLQYGLVKKIDY LSDSGHKVEASLRVLLREITDKFCQLPAALPVNVTLITDQPDSEIRSAFVSAWEALFPQR VVPDNIEVTPDFSMGWVDERLKQPVLTVDLILVIQLNGGNTYSDGLAALLLTSDDVAQKY NLSHSARLLRPMSLDINKFNDEFTLFLETQTAACRTARVLGDCYHWEKIAAPLMTIGNQY GAGWEPSGRMLLEKWCGIPGPAAPWLLTALAADLVCLGNDSLLTLFSSGEEHFISTVTSG NQNE >gi|223713529|gb|ACDM01000069.1| GENE 9 4384 - 6576 848 730 aa, chain + ## HITS:1 COG:YPO1482 KEGG:ns NR:ns ## COG: YPO1482 COG3523 # Protein_GI_number: 16121754 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 22 622 27 624 1140 279 32.0 1e-74 MNKLACLSGRFGRPGIVFIGVAALWWLITRYGAYLGAETRRDQILLLILLSLGVLFVCYL PVMKKYVQELTYRRRARKEQRLPDDEERLAQTPPRYVTVQDIRHTLRRQYGRFWGRKIRI LLITGTASEVELLTPGLTEQFWQEEQGTLLLWGGDPSQPENADWLAALRRLRYRPADGIV WVTSGLSETLSAPLTEDALDRVSRAVSSCCERLGWRLPLYVWSLQESPDERGRITQPVGC LLPAECSSDKLKAQLQAMLPGLVAQGIQQICCAPRYYFLLSLAERFRRNIDAVVEPLSVL LRPYRQLLLAGIVFSPATVGGERSVRHRWRMDNRWEALPETVQQLPVRLQPSRTGHNWRR SLAVMAAILMMAQGTGMVVSFLANRSLVAEVQEQIRPAQNQQLSPAERLQALLNLQKSLA RLQYREEHGAPWYLRAGMNQNADLLAVVMPLYAQNAHLLLRDAAAAHLEQQLRTFIRLPP DSPQRGKMAKAAYDQLRLYLMLAQPQHMEPAWFSRTLMREWPQRDGVSAVFWQANGPTLL AYYASGIITHPQWKLTADEELVSQSRTLLLRHLGTQNSDAMLYQKMLARVTMRVHHPVSL KSRPVMGDHATDVNGQVLLQLSTQTGSEVQGWLPGGHLYSDLLALLHVYLGSRLDVRLQL CVERSLLPDARLSCRPAAGSPQLGRTAVMRTQAKIATSAARVMTISLGRYQRVQEHYQRK ETQENGDYRW >gi|223713529|gb|ACDM01000069.1| GENE 10 6557 - 7093 351 178 aa, chain + ## HITS:1 COG:YPO1487 KEGG:ns NR:ns ## COG: YPO1487 COG3521 # Protein_GI_number: 16121760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 21 172 3 157 162 155 50.0 3e-38 MAIIAGKAGYGLIIALFSLSLSGCGLTQRVADGTVSATKSLFYRQIKTLHLDIRAREAIN TSAAGIPLSVVVRIYQLKDNRSFDSADYQALFTGDNEILAGDIIAQKDVWLQPGGSVAVD MPLDDAAKFTGVAAMFLEPDQKKNTWRVVLGRDELEPDTPRLIEVSGNTLTLLPVKDK >gi|223713529|gb|ACDM01000069.1| GENE 11 7096 - 7527 393 143 aa, chain + ## HITS:1 COG:YPO1488 KEGG:ns NR:ns ## COG: YPO1488 COG3518 # Protein_GI_number: 16121761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 4 141 7 144 150 182 71.0 1e-46 MPRPSLYEILYGNFTGGLELNQVGEEEQVILSVLDNMQRILNTRAGSLKHLPDYGLPDIT TILQGMPGTAHQLMRVLSDVLLKYEPRIKRVDVTMQEQTQPGELHYVIDAELKDAGLVRY GTTFIPEGRVLLRHLKQQRYVQT >gi|223713529|gb|ACDM01000069.1| GENE 12 7684 - 8085 109 133 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3318 NR:ns ## KEGG: EC55989_3318 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 133 5 137 137 245 100.0 3e-64 MKKIIFFLFVGLLFSVQADAARGRKPCSGAKGGISHCTSDGRFVCNDGSLSQSKRLCSGY GVAPGKRQVKSPVTTKPVQKEKSAAVRKVSQPSVAEKNEAVPVTEPRNPTCAPLYMASKP GFTHLPICSGNQY >gi|223713529|gb|ACDM01000069.1| GENE 13 8241 - 8741 263 166 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3317 NR:ns ## KEGG: EC55989_3317 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 27 160 1 134 388 247 99.0 9e-65 MAGGKKDDNAAGFVLILVCVILWGIYVAVRALINLNERFIDAVSNPAGIIGLFFGLLTVF AILLRFFIYRRLRKKTAAFEQAVSELVQRERGFNETVNAAIARGIRQEKEQLARRREEFH TARQKASRAMQRIVDSAWKFKAKTLLAGVTINNWQSKYDQQSVLAT >gi|223713529|gb|ACDM01000069.1| GENE 14 9268 - 9744 234 158 aa, chain + ## HITS:1 COG:PA2365 KEGG:ns NR:ns ## COG: PA2365 COG3516 # Protein_GI_number: 15597561 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 3 152 4 157 181 132 48.0 3e-31 MSNTQHKLDKTRPPRVQITYDVETGDAETAKELPLVIGVLGEYSSSEKPLRERKFISIDK DNFDEVMASMSPTAHFMVDSVIPGNEGKLDVELRFSCKDDFSPDNVIQQVECLRKLSELR LHLCDLRNRAASNEKLKEKLQELLVTTNGNPENDESKE >gi|223713529|gb|ACDM01000069.1| GENE 15 9747 - 11225 607 492 aa, chain + ## HITS:1 COG:RSp0744 KEGG:ns NR:ns ## COG: RSp0744 COG3517 # Protein_GI_number: 17548965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 20 488 22 491 496 535 53.0 1e-152 MTVASTLGLNETQYATDDCLEEIINNTRAVRQDSEKTRFKLQINNFLAEVASGSLVINSD LIGSIEKRIADIDKLMSEQLSLIMHATEFQKIESAWTGLYKLVQASVTENVKYTVLHCTK KELLKDFKSASDFDQSVLFKNIYESEYGTFGGTPYSAFVGDFYFDNTPQDIDLLEHISHV AASAHAPFLSAIAPGMLSMSSFSELPYPRDLAKLFETTDYARWRSFRQTDDSRYVGLTLP QSLGRIPYGMKTIPAETFNFEEHISEDNSGKDYLWVNTAFELACRIVDAFEEYGWCAAIR GVEGGGLVKSLPAYNYVSHTGERLLQCPTEVAISDRREKELSDLGFIPLVYCKGTDFAAF FAVQSVNKARLYNTDQANANAKLSSQLQYILATSRFAHYLKVIVRDKVGSFMSRTECQTY LQNWIMQYVVASDNAGQETKARYPLREASVEVIEVPGSPGNYRAIAWIKPHFQLEGLSMS LRLVADLPSSVS >gi|223713529|gb|ACDM01000069.1| GENE 16 11571 - 11741 116 56 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3296 NR:ns ## KEGG: EC55989_3296 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 56 113 168 168 111 100.0 8e-24 MHNMLLAHDNDSNLILELSFTPEESVSIEMNIPSDDGKSTEKLGPMTYNLYKEALV >gi|223713529|gb|ACDM01000069.1| GENE 17 11751 - 12173 195 140 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3295 NR:ns ## KEGG: EC55989_3295 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 140 1 140 140 247 100.0 8e-65 MHSFLQFLRDDNPGSLEDHLNFVPSDDLKYELGMLLSSRPLYLETDELPFVSSSVLNYGI KSSVYVVSAGEHSDSVNDEISSRILMMLQRYESRLEEPVVEYLSSDDNYSFFSVTALFFM DMVRLCIKWDKNSGEFSLDE >gi|223713529|gb|ACDM01000069.1| GENE 18 12166 - 13968 347 600 aa, chain + ## HITS:1 COG:RSp0747 KEGG:ns NR:ns ## COG: RSp0747 COG3519 # Protein_GI_number: 17548968 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 579 1 595 616 264 31.0 4e-70 MNKLLSYYQKELAFLRKQGIEFAKKYPKVARRLGYNQGGSEDPHVQRLTESFAFLSSKIH QRLDEDLPELMEALLRNLAPQFLYNYPSSCIVSFEPDRKSSGITSTYRVPSGTSLYSRYK YKTICQFRTVYPLTIVPATVNKARIHYDNSSSLWKIELNLDVFDGANFSLDFVRFYLNGP ATVTGIIYTLLCDEVDNIVLQRNNDVLYDISANISGAGFYESEVTLPQKGNVSYIHNLIL DYFSFPERFNFIDIEFDSGIELCSGDSVRIEITLKSSAEKYEPDRIERNVSERLFKVNCS PVVNLFEKKTEPLRLSDGQDEYQVNTDLYSRNEVLIWDINKVTLHRYENDIVKQFPLKNL FGLEHSVIKQSCNIFWHSSCYRSSSERGNFEESVYIRLSDDGGAQSCIMTGDVLSIDAIC TNGNIPSSINNGDPDGDFDCDIDIAQLRITALNRPSRMLPAMALKGMNWRIVSQLSLNFV LLSGTDGAMKLREMLSIYNYNNNHSISIFIEWIKELQITPVSSRLPGIYPPVTARGIDIT VTLSKDADMHPECFMFCSFLDHFLGLHAPVNSFTRMITVIEHEEHTRRVWPIRAGKLTWL >gi|223713529|gb|ACDM01000069.1| GENE 19 13959 - 14891 306 310 aa, chain + ## HITS:1 COG:RSp0748 KEGG:ns NR:ns ## COG: RSp0748 COG3520 # Protein_GI_number: 17548969 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 3 270 16 315 363 85 27.0 2e-16 MALINNRSKFSFFNKVRVLLKNILKPDESVEDVVDEHFRFTSSLSLDAPDGQIENLYQDE KDGKYHLTLFDNGLTGATGILPAAYTEWLIERKLRYNDDAPKAFMDMFDHRMYCLSYLAW QKMHLSGDENRRDNNVLNNVLLSLGGITPQTVSVTGLAYVAFYSQPVRSLAGLEQLLSLI HQIRVSINPFRGTFENTEPSEQGVLGNCLYTLGEGPVIGNVRWVVDSHFDVVLGPVDYRK AQELMPGKDSHYFIRQQIRSYIGDVLKFKIYVKIYPGNNDNQLNINNKLGFNLSLGSETE NYKERCFCIF >gi|223713529|gb|ACDM01000069.1| GENE 20 15471 - 16886 365 471 aa, chain + ## HITS:1 COG:PA2373 KEGG:ns NR:ns ## COG: PA2373 COG3501 # Protein_GI_number: 15597569 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 111 470 285 667 668 167 32.0 4e-41 MTLADDPASHPKASYDKLEHLPCENLKESRHGYIREWSFTESLKCPSVTLSGYNESNVSE ITIKSESKLTDVKPSKGVYEDIIPERKRELIKKRSEALIASCDSELKIWSGKTDSWWLSC GECFSLDKQDYRITSLYLNAVNNDNEHAGLCYCDLCASDNKSSLNFSREFKTPIIPGVLL ARVVGPDSEEYYTDDNGRVKISFLWGEKSAAGTDKTSCWVRVSQVWSGEGFGSQFIPRIG SEVLVSFIQGNPDYPVIVGTVYNGQNTSPFSLPENNCKSGFITRSVKNGKKGEGHQLVFD DKEGEEKVIVTSSGDSLLTVKKDMISTINRSMSLTIAEGRNAEIKRGNDRLVLKEGDLHN DVHGNINIKVSNGDYNLKVSGGSGSLITDKNLTLESTQSIKIKVGANEITISTSGIDIKA AKITIEGQVSAEVKAATLKFESQAISEVKGTMLTLQGSAMTQIKGGIVNIG >gi|223713529|gb|ACDM01000069.1| GENE 21 16897 - 17364 180 155 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3291 NR:ns ## KEGG: EC55989_3291 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 155 1 155 155 315 100.0 3e-85 MSETKNITVPEINKTVEQMLIKGRWLDALDFWINNTDSLVLIRWLAQFISQLSPEEDSLL LQSIVRWKEGDDEQRWEIFRHAESVGFSTQTGALGVSLFVSQGSLSPAPYDPVYAPSCSE KKIIYGILMHQSNKYYDAPDEGVFFLFRHWCNSHS >gi|223713529|gb|ACDM01000069.1| GENE 22 17374 - 17673 84 99 aa, chain + ## HITS:1 COG:all3319 KEGG:ns NR:ns ## COG: all3319 COG4104 # Protein_GI_number: 17230811 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 1 99 1 99 100 94 62.0 6e-20 MPQPAARVTDMHVCPMVTPGLPPVPHVGGPLLPPGSPSVFIGGLPAATLGTLALCSGPVD VVIMGSVKVLICGKPAARMGDICAHGGTIVSGYPQVLIG >gi|223713529|gb|ACDM01000069.1| GENE 23 17677 - 18753 331 358 aa, chain + ## HITS:1 COG:RSp0759 KEGG:ns NR:ns ## COG: RSp0759 COG3515 # Protein_GI_number: 17548980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 29 356 7 326 337 102 26.0 2e-21 MNKIETDTLLLPVIGESPAGDDIEYDPVYSEIREARQNDPDYMSQGEWAVSEPRRADWRK VRKLCEVTLRNKSKDLQISCWYVESLTHLYALEGMHCGLEYLAKFISQYWTTCWPSQEEG QEIRYSKLVRLDIDLSEYLKAYPLLEDKEITLSEWYKVLSFEHGASLSEAGKERLIESEG DHSVESFKRAVGKYNPRKVSEQLLQLYDLPDKIDEIESSYFFHTHEDIHHIFAKTRHIIS EITELLSRFLPQETLDHSSVSQFLGKPDSRDTRTALPEEKKEFYSALTPSTDKEMSREKA IEQLEKIAIFFRQSEPTSPVPYLLERAIRWSTMTMSEWLEELLKDNDSMEQINRVLKG >gi|223713529|gb|ACDM01000069.1| GENE 24 19004 - 19312 245 102 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3288 NR:ns ## KEGG: EC55989_3288 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_55989 # Pathway: not_defined # 1 102 83 184 184 214 100.0 6e-55 MNNPVLIKQFFIGTGKVDGILKVDKYVAMPGQEITLHIDRNEGTKYVGVVAGYYPFPGKQ HMLLLDIPVDVVEEGWWNKSLHASLLPLSKKISMGKESISMK >gi|223713529|gb|ACDM01000069.1| GENE 25 19739 - 20743 -23 334 aa, chain + ## HITS:1 COG:AGl1059 KEGG:ns NR:ns ## COG: AGl1059 COG3522 # Protein_GI_number: 15890649 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 297 159 429 446 65 20.0 1e-10 MRNVYHDSQDADITRIKYDIQILTDEEKDNTTDYEYLPLTRIIYGNNSLCIDDECSFPVM RLSANHKLRNKIAEIYSDIKFYKNRLEKYRYTERTVSDGHLYNFLILCAINRTLPLLSSF INEDAIHPWLYYMALCQFAGEISTFHNSGLSDTRIVELSYNHYEQISCFSDLQYYIKLIL DDSCRDKIISVEFRKITTDTLICNFDEYGAGSNSDYYIKLTSDTFRKNKLIALPEIKIAP SEHIDMIIQHALPGIKFTVMDAVTSDLQVRENTIWLKIDKHSELWTLAQTQKRVAFYWSC SPDDLLVELVLSQEKYAVSRPKQDNGSFHPAVGR >gi|223713529|gb|ACDM01000069.1| GENE 26 21082 - 21672 105 196 aa, chain + ## HITS:1 COG:RSp0739 KEGG:ns NR:ns ## COG: RSp0739 COG3455 # Protein_GI_number: 17548960 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 38 145 68 178 263 69 35.0 4e-12 MNIVECYMPVFKLISSVRVFPEEYSDYDSTRKNIINTVEEAVRNSEKMSLSDSELDAAFY AVIVMLDEAILCSELPCRKEWRDNLLQIKYFGHSTGGVEFFYKLDKVIESGSQAGWVFLL CLLLGFRGKYSVGSNDEINNYISRLRRQCELNVAIDEGNNISLREKKYKSSRLGFYLLLV GIVAVYFVVLSMIYMR >gi|223713529|gb|ACDM01000069.1| GENE 27 22415 - 22630 125 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSEYFRPFNLSGNCSISFFSLSLNESSSAWHIDAIILDLNDDNMYDESYSDAFVPDLLV AQNTGCHFSCF >gi|223713529|gb|ACDM01000069.1| GENE 28 23109 - 25082 668 657 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3284 NR:ns ## KEGG: EC55989_3284 # Name: not_defined # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_55989 # Pathway: Bacterial secretion system [PATH:eck03070] # 1 657 481 1137 1137 1302 99.0 0 MQASPSGKRELILSLSSSLISWDKMMKDESLSDLAKSPGIHELLKITRPHDKISSIASLA VERDEIQKNNGIENIYVFRNLLTELVQSDPSYSWFVSEDVNIPAVRITDFWEDENSSVYL SGIWTQPGQNKLHQWYETIKEAYGRDTVPEAFSSFVLYLDESRQEHFRQFIMSVARARKD SHSGLMNPLQLTNIIHNRSSEHRFFQFVDDELHNIPTSSAQDWLSEFRLLNHLFSLKVDN GMKRQIEQFDLMLRIYLISVLNNSQMNRTLTHVTTWRSWQNALRNAVNSVLHTASSVELI RNAMRSDPENKLVILFDEFEKVRSVINSNNREPVIDSVWDIYERQIYQLLDHAVTYTGCW VGEQWRNSVLGRFNSGKHNLSYSEMQGKVYKDIIGFLKGPSNGVLALDPDGVRLLSFRER SIPFSPSFITFINDIVSPDDLLDVWLRERTQNKDELINVQGQLDLLNQTLQNAESQPYRV TIDSAPATIPDNPRVKPTGTTLTLECKTGNSSIRSMNFADSGIFTWYPGSCHSVRIDILF PNFSATYKFTGETAWIDFINKFSDGESELMTKDFSPESRNFLESMGIKGILVRYKLSDTG NLSQAYIEWEQLKQEKDKLKDLQVNLSNKLLTTHSWEKSAWISRLPGNITICPVVQE >gi|223713529|gb|ACDM01000069.1| GENE 29 25086 - 27635 1142 849 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 8 809 2 779 815 444 34 1e-124 MSIYLKPIINKLTPESRNTLDSAINYAISRSHHEVDCLHLLWKLLQEHKYIAEVLYEQSL FNPEWVLNAIESELIRINTVPQSSPVFSESMQTLLEKTWIHASTKWQIDHIDIPVFLSTM INFRDSIFPLNVSDALCCDMDVAEELLISFSDEAEHSASHRPTDRSSHEYLSKYTENLSL RAETGKLDPVTGREKEVRQLIDILLRRRQNNPILTGEPGVGKSSIVEGLALQIASGRVPD VLKNVRIHALDMGALLAGASVRGEFENRLKSLLTELNSLDGTAILFIDEAHSLIGAGGLP GQTDAANLLKPALARGELRIIAATTWGEYKKYFEKDGALARRFQIVKVAEPNQDVTAEML RSLLPMMEKHHNVSIREEAITATVHLSDRYLHGRRQPDKSVSLLDTACSRVAVSQSTSPD AIQDVEASLVRYQGELALLTQERSDVLRQEMLANKIAQLEEELEQLKSAWRHQSELVAKI QSSDDISSKNMYRKELESAYKKDSPMVFECVDKNCVADVVSGWTGVPLGVCLDGEQQKAS GLLRCLEQRVLGQRYAMSAIASQVLICRADLKDPVKPDGVFLLAGPSGTGKTETARALAE FVYGDENKLITINMTEFQEAHTVSTLKGAPPGYVGFGQGGTLTERVSHNPYSVILLDEIE KAHPDVLEFFFQIFDSGIIEDAEGKMVSFRDCLIIMTSNFASENITNIWNDGETNRDRIK EMLLPLFNEHFGAAFMGRTNLIPFTPLHSKTLRDIVLIKIDKICQRFEQASGQMYKIEYN DSLIDWITHHCQCDKSGARDIDSVLNSTVLPVLARYLTDSEDNRTPKKIRISVRKNNITL RSSQFATRN >gi|223713529|gb|ACDM01000069.1| GENE 30 28423 - 28641 193 72 aa, chain + ## HITS:1 COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 71 91 161 296 140 98.0 7e-34 MAVMGLAGVLRGKKVRTTISRKAFAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVA FIIDVFAGYIVW >gi|223713529|gb|ACDM01000069.1| GENE 31 28657 - 29043 377 128 aa, chain + ## HITS:1 COG:ECs1689 KEGG:ns NR:ns ## COG: ECs1689 COG2801 # Protein_GI_number: 15830943 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 128 169 296 296 240 95.0 5e-64 METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYKARLKEAKLLASTGSTGDSYDNA MAEIIKGLYKAEVIHRKSWKNRTEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYAS IGNDDLAA Prediction of potential genes in microbial genomes Time: Mon May 16 19:18:44 2011 Seq name: gi|223713528|gb|ACDM01000070.1| Escherichia sp. 4_1_40B cont1.70, whole genome shotgun sequence Length of sequence - 4967 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 378 - 527 59 ## gi|256025042|ref|ZP_05438907.1| hypothetical protein E4_16848 2 1 Op 2 . + CDS 511 - 630 78 ## + Prom 637 - 696 2.7 3 2 Tu 1 . + CDS 788 - 997 92 ## ROD_50021 hypothetical protein + Term 1194 - 1239 -0.9 + Prom 1503 - 1562 1.8 4 3 Tu 1 . + CDS 1584 - 2150 133 ## gi|256025043|ref|ZP_05438908.1| hypothetical protein E4_16853 + Prom 2596 - 2655 6.1 5 4 Tu 1 . + CDS 2713 - 3783 189 ## gi|256025045|ref|ZP_05438910.1| hypothetical protein E4_16863 + Term 3994 - 4037 1.0 Predicted protein(s) >gi|223713528|gb|ACDM01000070.1| GENE 1 378 - 527 59 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256025042|ref|ZP_05438907.1| ## NR: gi|256025042|ref|ZP_05438907.1| hypothetical protein E4_16848 [Escherichia sp. 4_1_40B] # 1 49 1 49 49 80 100.0 4e-14 MRSLLRDLKSNPRRHVQNVLLKYEPHFKFIKVVMQKQDQPREPSYVIDA >gi|223713528|gb|ACDM01000070.1| GENE 2 511 - 630 78 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLMPETRDVSLFRHGITSMSEGRVLLRYLKQQDDSVFL >gi|223713528|gb|ACDM01000070.1| GENE 3 788 - 997 92 69 aa, chain + ## HITS:1 COG:no KEGG:ROD_50021 NR:ns ## KEGG: ROD_50021 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 2 69 32 99 101 110 79.0 1e-23 MEAVYIGNDVCHITITCNQSGFHLTKNGVRVLTERNIRSLNELLPLLRRRWDVTPAIILA VEYLLRVSV >gi|223713528|gb|ACDM01000070.1| GENE 4 1584 - 2150 133 188 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256025043|ref|ZP_05438908.1| ## NR: gi|256025043|ref|ZP_05438908.1| hypothetical protein E4_16853 [Escherichia sp. 4_1_40B] # 1 188 1 188 188 390 100.0 1e-107 MIIYFFPFQMDENDTFLDAEVKYQKMKNKECYGVKASHKTPLSFLKSSDTLYIVAHGNTS VIGTGSATGPTLNPLALATLLMNRRLPKNFIDIRVLTCASGIHSRTPAFAQRLKEIMNEH GYHSLVVTGYLGEVDISRDWRLKNDDGMAFYSSRKKGIIPVKDVLSESQRALCGSDLKYA LSDFKKRF >gi|223713528|gb|ACDM01000070.1| GENE 5 2713 - 3783 189 356 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256025045|ref|ZP_05438910.1| ## NR: gi|256025045|ref|ZP_05438910.1| hypothetical protein E4_16863 [Escherichia sp. 4_1_40B] # 1 356 29 384 384 707 100.0 0 MNNLSPAKCERAYWMTLEKRCLSLFMENGYDLQTGAWFCLISANLYSWEGLALSSWKFAD SFVKEKCWPHVTATQMRTNILIWYIKNVIPAMQSLPDDEKTYSSLTLLEDALTLLADLEY NLLSGKFFIVSDMLAELKRQKSDDSESTDAAHHDSGSHDAKDIRSFSSGLPTNIDSNYTA GPEHNTLIKKDKKLRIYYNVVSFISGALITVVMNYAGRPETVLKLRGIIPDSFITEMVMN YSGCSVSLPNSADSWSKLGKKIDDFTETLNVIENDGGYITISKLKTIAYDLKNTFLEYDM PVNIKISDLYNNQNMSKVDINRELEMIQHNINKFNCEIGYLRLRNEGLLKDKVREK Prediction of potential genes in microbial genomes Time: Mon May 16 19:19:15 2011 Seq name: gi|223713527|gb|ACDM01000071.1| Escherichia sp. 4_1_40B cont1.71, whole genome shotgun sequence Length of sequence - 2086 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 9 - 68 2.7 1 1 Op 1 2/0.000 + CDS 100 - 1233 263 ## COG3547 Transposase and inactivated derivatives + Prom 1334 - 1393 5.0 2 1 Op 2 . + CDS 1444 - 1635 154 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|223713527|gb|ACDM01000071.1| GENE 1 100 - 1233 263 377 aa, chain + ## HITS:1 COG:mll9195 KEGG:ns NR:ns ## COG: mll9195 COG3547 # Protein_GI_number: 13488118 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 8 364 7 363 369 336 47.0 5e-92 MHSENIAAYIGLDVHKETLAVAIAAPERLGEVRYYGTINNEAQAVRRLFQKLQGLYGNIL SCYEAGPCGFGLYHQLTAMNIKCQVIAPSRIPKSPTDRIKNDHRDAISLARLLRAGELTP VWIPDLTHEAMRDLIRARAAAKRDSRVARQRILSMLLRTDKRYAGKHWTGKHRTWLANQS FSQPSQQIAFQHYCQSLEQIEDRILQLDQEISRLLPEWSLCNLVCQLQALKGVGQLTAIT LVAELGDFSRFSSPKQLMAFLGLVPGEYSSGNSIRPRGITKVGNSELRRLLYEAAWSYRT PAKVGAWLIYYRPDSVTQYSKDIAWKAQQRLCSRYRSLTAKGKKSQVAITAVARELTGFM WDIALAAQSSFSQQKQN >gi|223713527|gb|ACDM01000071.1| GENE 2 1444 - 1635 154 63 aa, chain + ## HITS:1 COG:SMb20827 KEGG:ns NR:ns ## COG: SMb20827 COG2801 # Protein_GI_number: 16264315 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 1 63 87 149 195 90 65.0 1e-18 MLLDAVEQLNKDDKPLLHSDQGWQYQMPRWQRWLSDNGITQSMSRRGNCLDNAAMESFFS TLK Prediction of potential genes in microbial genomes Time: Mon May 16 19:19:16 2011 Seq name: gi|223713526|gb|ACDM01000072.1| Escherichia sp. 4_1_40B cont1.72, whole genome shotgun sequence Length of sequence - 1358 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 3 - 465 330 ## COG3436 Transposase and inactivated derivatives 2 1 Op 2 6/0.000 - CDS 496 - 846 338 ## COG3436 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 843 - 1277 269 ## COG2963 Transposase and inactivated derivatives Predicted protein(s) >gi|223713526|gb|ACDM01000072.1| GENE 1 3 - 465 330 154 aa, chain - ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 154 1 154 537 227 94.0 6e-60 MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEDEREIEH LRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSRHR RPLPAHLPREIYRLEPEESCCPECGGELDYLGEV >gi|223713526|gb|ACDM01000072.1| GENE 2 496 - 846 338 116 aa, chain - ## HITS:1 COG:ECs1338 KEGG:ns NR:ns ## COG: ECs1338 COG3436 # Protein_GI_number: 15830592 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 116 1 116 116 228 97.0 2e-60 MISLPSGTRIWLVAGVTDMRKSFNGLGEQIQHVLDDNPFSGHLFIFRGRRGDTIKILWAD ADGLCLFTKRLEEGQFIWPAVRDGKISITRSQLAMLLDKLDWRQPKTSRLNALTML >gi|223713526|gb|ACDM01000072.1| GENE 3 843 - 1277 269 144 aa, chain - ## HITS:1 COG:Z1648 KEGG:ns NR:ns ## COG: Z1648 COG2963 # Protein_GI_number: 15801134 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 6 144 5 141 141 140 54.0 6e-34 MDKPTDWRSGTRRIFSNEFKLHMVELASKPNANVAQLAREHGVDNNLIFKWLRLWQREGR ISRRMPPTIVGPTVSQSFPASPTLVPVELIDTPRCATDAPAPEALSVACAASCHVEFHYG KMMLENPSPELLTVLIRELTGRGR Prediction of potential genes in microbial genomes Time: Mon May 16 19:19:19 2011 Seq name: gi|223713525|gb|ACDM01000073.1| Escherichia sp. 4_1_40B cont1.73, whole genome shotgun sequence Length of sequence - 7211 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 351 - 380 2.8 2 2 Tu 1 . - CDS 394 - 4233 2224 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 4424 - 4483 2.3 - Term 4847 - 4880 4.0 3 3 Op 1 2/0.000 - CDS 4974 - 5180 118 ## COG2801 Transposase and inactivated derivatives 4 3 Op 2 2/0.000 - CDS 5299 - 6375 310 ## COG3547 Transposase and inactivated derivatives 5 3 Op 3 . - CDS 6594 - 7001 216 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|223713525|gb|ACDM01000073.1| GENE 1 1 - 243 177 80 aa, chain + ## HITS:1 COG:ECs2221 KEGG:ns NR:ns ## COG: ECs2221 COG3328 # Protein_GI_number: 15831475 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 80 210 289 289 157 96.0 3e-39 AYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDSVKKVVWLAIQSASQKWTMPLKD WRMAMSRFIIEFGDRLDGHF >gi|223713525|gb|ACDM01000073.1| GENE 2 394 - 4233 2224 1279 aa, chain - ## HITS:1 COG:NMB1998 KEGG:ns NR:ns ## COG: NMB1998 COG3468 # Protein_GI_number: 15677826 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 1 748 65 878 1431 298 32.0 6e-80 MGRLGKAPMADFSSVSSNGVATLVSPQYIVSVKHNGGYRSVSFGNGKNTYSLVDRNNHPS IDFHAPRLNKLVTEVIPSAVTSEGTKANAYKYTERYTAFYRVGSGTQYTKDKDGNLVKVA GGYAFKTGGTTGVPLISDATIVSNPGQTYNPVNGPLPDYGAPGDSGSPLFAYDKQQKKWV IVAVLRAYAGINGATNWWNVIPTDYLNQVMQDDFDAPVDFVSGLGPLNWTYDKTSGTGTL SQGSKNWTMHGQKDNDLNAGKNLVFSGQNGAIILKDSVTQGAGYLEFKDSYTVSAESGKT WTGAGIITDKGTNVTWKVNGVAGDNLHKLGEGTLTINGTGVNPGGLKTGDGIVVLNQQAD TAGNIQAFSSVNLASGRPTVVLGDARQVNPDNISWGYRGGKLDLNGNAVTFTRLQAADYG AVITNNAQQKSQLLLDLKAQDTNVSEPTIGNISPFGGTGTPGNLYSMILNSQTRFYILKS ASYGNTLWGNSLNDPAQWEFVGMDKNKAVQTVKDRILAGRAKQPVIFHGQLTGNMDVAIP QVPGGRKVIFDGSVNLPEGTLSQDSGTLIFQGHPVIHASISGSAPVSLNQKDWENRQFTM KTLSLKDADFHLSRNASLNSDIKSDNSHITLGSDRAFVDKNDGTGNYVIPEEGTSVPDTV NDRSQYEGNITLNHNSALDIGSRFTGGIDAYDSAVSITSPDVLLTAPGAFAGSSLTVHDG GHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYLTDGYDLTGDNAALEITR GAHASGDIHASAASTVTIGSDTPAELASAETAASAFAGSLLEGYNAAFNGAITGGRADVS MHNALWTLGGDSAIHSLTVRNSRISSEGDRTFRTLTVNKLDATGSDFVLRTDLKNADKIN VTEKATGSDNSLNVSFMNNPAQGQALNIPLVTAPAGTSAEMFKAGTRVTGFSRVTPTLHV DTSGGNTKWILDGFKAEADKAAAAKADSFMNAGYKNFMTEVNNLNKRMGDLRDTNGDAGA WARIMSGAGSADGGYSDNYTHVQVGFDKKHELDGVDLFTGVTMTYTDSSADSHAFSGKTK SVGGGLYASALFESGAYIDLIGKYIHHDNDYTGNFASLGTKHYNTHSWYAGAETGYRYHL TEDTFIEPQAELVYGAVSGKTFRWKDGDMDLSMKNRDFSPLVGRTGVELGKTFSGKDWSV TARAGTSWQFDLLNNGETVLRDASGEKRIKGEKDSRMLFNVGMNAQIKDNMRFGLEFEKS AFGKYNVDNAVNANFRYMF >gi|223713525|gb|ACDM01000073.1| GENE 3 4974 - 5180 118 68 aa, chain - ## HITS:1 COG:VC0257 KEGG:ns NR:ns ## COG: VC0257 COG2801 # Protein_GI_number: 15640286 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 1 67 223 289 290 102 68.0 2e-22 MERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYNALRPHEYNGGLPPNESENRYWKN SNSVASFC >gi|223713525|gb|ACDM01000073.1| GENE 4 5299 - 6375 310 358 aa, chain - ## HITS:1 COG:MT3430_1 KEGG:ns NR:ns ## COG: MT3430_1 COG3547 # Protein_GI_number: 15842922 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 4 345 22 362 413 100 30.0 5e-21 MVDKVTKAAVVGGVDTHKDLHVAAVVDQNNKVLGTQYFSTTRQGYRQMLAWMTSFGTLKR IGVECTGTYGSGLLRYFQNAGLEVLEVTAPDRMERRKRGKSDTIDAECAAHAAFSGIRTV TPKTRDGMIESLRVLKTCRKTAISARRVALQIIHSNIISAPDELREQLRNMTRMQLIRTL GSWRPDASEYRNVTNVYRISLKSLARRYLELHDEIADLDVMIAAIVDELAPELIKRNAIG YESASQLLITAGDNPQRLRSESGFAALCGVSPVPVSSGKTNRYRLNRGGDRAANSALHII AIGRLRTDAKTKEYVARRVAEGHTKMEAIRCLKRYISREVYTLLRNQNRRINSIPITA >gi|223713525|gb|ACDM01000073.1| GENE 5 6594 - 7001 216 135 aa, chain - ## HITS:1 COG:b4285 KEGG:ns NR:ns ## COG: b4285 COG2801 # Protein_GI_number: 16132106 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 114 62 175 198 234 96.0 3e-62 MGRWLAGRLMKELGLVSCQQPTHRYKRSGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIW TGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDSNNAD VSLYHHLVCRLTRLV Prediction of potential genes in microbial genomes Time: Mon May 16 19:19:22 2011 Seq name: gi|223713524|gb|ACDM01000074.1| Escherichia sp. 4_1_40B cont1.74, whole genome shotgun sequence Length of sequence - 13227 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 6, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 9 - 302 72 ## EC55989_3270 hypothetical protein - Term 315 - 361 7.8 2 2 Op 1 . - CDS 391 - 3261 1679 ## EC55989_3269 putative PstII restriction-modification enzyme Res subunit 3 2 Op 2 . - CDS 3264 - 3989 579 ## COG2189 Adenine specific DNA methylase Mod - Prom 4091 - 4150 1.9 + Prom 3883 - 3942 8.2 4 3 Tu 1 . + CDS 4010 - 4342 63 ## 5 4 Op 1 . - CDS 4902 - 7289 1426 ## EcE24377A_3322 S8A family peptidase 6 4 Op 2 . - CDS 7299 - 8279 767 ## COG0464 ATPases of the AAA+ class 7 4 Op 3 . - CDS 8305 - 11154 1915 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 11190 - 11249 3.5 + Prom 11296 - 11355 2.3 8 5 Op 1 . + CDS 11455 - 11637 120 ## EC55989_3263 hypothetical protein 9 5 Op 2 . + CDS 11640 - 12158 198 ## EC55989_3262 hypothetical protein + Term 12241 - 12268 1.5 - Term 12546 - 12578 3.1 10 6 Tu 1 . - CDS 12624 - 12887 241 ## EC55989_3261 hypothetical protein - Prom 12974 - 13033 2.7 Predicted protein(s) >gi|223713524|gb|ACDM01000074.1| GENE 1 9 - 302 72 97 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3270 NR:ns ## KEGG: EC55989_3270 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 97 1 97 97 191 100.0 8e-48 MNTERPLPQKQNLYKTMWYLIFSAERFVTIAAENSMAFELEHEEYKRKLAERNYSIDPKV HVHSHPQRLKDLRTLLLKTTGCILSVIILIVGIGFYT >gi|223713524|gb|ACDM01000074.1| GENE 2 391 - 3261 1679 956 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3269 NR:ns ## KEGG: EC55989_3269 # Name: not_defined # Def: putative PstII restriction-modification enzyme Res subunit # Organism: E.coli_55989 # Pathway: not_defined # 1 956 1 956 956 1963 99.0 0 MSQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVK GFERAFPSLCFALATGVGKTRLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGS PKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESKTGDLFGGETAPHINIFNISK INALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEE QLEKIKLEDGIHHHEYVKTELTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFF NGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVIHVNKLKEGWDVTNLYTIVPL RASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTE TERKVAELTFKVVSEEAKRLTSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQI DLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTIDIPRIVVLPKREVNYGFNDFN LSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQ GFDVIHPATFNFAGNEKPRDFRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRL AQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMNNGYCLIEPKKANEIDTPEVQ AKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA >gi|223713524|gb|ACDM01000074.1| GENE 3 3264 - 3989 579 241 aa, chain - ## HITS:1 COG:HI1056 KEGG:ns NR:ns ## COG: HI1056 COG2189 # Protein_GI_number: 16272988 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Haemophilus influenzae # 12 100 436 523 629 103 57.0 3e-22 MIPTISAFDTPKPEALIKKILEIATDNGDLVLDSFAGSGTTGAVAQKMGRQWIMVELGDH CRTHIVPRMKKVIDGKDLGGITKSVSWQGGGGFRYLSLAPSLLKKDTWGNWVINKYYNPE MLAEAMCKHMNFTYAPSQTQYWNHGYSTETDHIYVTTGSLAYEQLKVLSEEVGTERTLLI CCKAFMTEGADFPNLTLVKIPRAILSKCEWDQDDYSFTLNVLSDSEQPDDIDYDEDTEDE E >gi|223713524|gb|ACDM01000074.1| GENE 4 4010 - 4342 63 110 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSCYFQLQNETISFLAVYLTNYQHIHENMESNHFVLSTNQFSISPDLFFVRPNANVHQFH LGALEKFLCHRGQQEGNTLLGDLLFYLLVPLPLAVLGSKDCRLDLLYRNG >gi|223713524|gb|ACDM01000074.1| GENE 5 4902 - 7289 1426 795 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_3322 NR:ns ## KEGG: EcE24377A_3322 # Name: not_defined # Def: S8A family peptidase # Organism: E.coli_E24377A # Pathway: not_defined # 1 795 1 795 795 1599 100.0 0 MTANYQHLTITKAPLQNDRRTRRVNMPRIRRGDLRQHGQMLLTQLHTLRPTLAQVPGSAD DGRYILKLNYSGTMNFSALIHHGVEFISQEGKQVCIVFTNEQGLTTFETHLAQLGLPRTD LTYRNILEALDGIDGWSAEDRKSWALRRYGFPVAERFNLDVELWPVDVAHHPRRIDLYTR FENWLREQGILWRDKVNLDSLLMYRIEVSLAQAEYLLAHRDVRLVDLPPSSGISYQQINR DINTLPEHLISPAVNAARVCILDSGINTNHPLLSAAIAESASFIPNQDAFDQEGHGTAVA SIALYGDVEACNQSNFWQPQLWLYNGKVLNERAEFNAETIESTLTAAVAYFTDLGCRIFN LSLGNANAPYDGKHIRGMAYLLDTLARQYNVLFVVSAGNFAGSDDPPVPQNSWRDEYPDY LLHEDSVIIDPAPALNVLTVGSVARHNATLDAQRRPGDIQHLSPATENQPSPFTRHGPSV KGAFKPDVVAHGGNVASNVRQGQWQAHMRGLGVLSCHHQFQGNTLFKELSGTSFAAPYIT HLAGRLLNEYPEMSANMLRAMLVNHASVSQEMTQAFPQAMRESYRNAPATRNREIERDVT GYGIIDEDALYRSSENVVVMRCEEQIENNAHQFFELPFPASFLRSQRATREVRVTLAYSP AVRTTRLDYTATRIGFRLVKGRSLDEVQASFNHQTQSETETRSDDAQTNRVVSAQQRERG TVQSSIWTFRQRNPDEKWFIVVTRQDRDWGEAFSSEQEPYALVVTATDRDNEQAQLYTQI QAQIREQERARARIG >gi|223713524|gb|ACDM01000074.1| GENE 6 7299 - 8279 767 326 aa, chain - ## HITS:1 COG:AGpT158 KEGG:ns NR:ns ## COG: AGpT158 COG0464 # Protein_GI_number: 16119896 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 316 18 335 345 159 35.0 8e-39 MANGKILRQLIKAGATGDTATFRRVSEAIIDEERQKQHHLLANDLEHILYGDRLVQASRS PALPQAPIDKERGLPLLDLRQPQRSLDEMILPATSATVIDELLEEHRRSDVLHSYGMKAA SKIMFFGPPGCGKTLTAEVIAFELDMPLAIVRLDVLVSSFLGETAANLRKIFDFIAEHPM VVLFDEFDAIGKERGDSGEHGELRRVVNAVLQMMDAYQGKSLILAATNHEHILDSAIWRR FDEVIEFPLPDQAQLRELLALKLRGTRRQFELDDSELLSLLLGKSGADIERIVRRATKHM ILRHQEFLTLKDLKNATQRENARTHR >gi|223713524|gb|ACDM01000074.1| GENE 7 8305 - 11154 1915 949 aa, chain - ## HITS:1 COG:BS_yqhH KEGG:ns NR:ns ## COG: BS_yqhH COG0553 # Protein_GI_number: 16079514 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus subtilis # 37 614 62 540 557 224 31.0 4e-58 MYSDHQRSYLAHWLTLSGKAEDSLTQTIASARVDMNPHQVEAAMFALASPLSNGVILADE VGLGKTIEASLILAQKWAERRRKLLLIAPATLRKQWSQELEEKFSLPSQIIEAKIFNQMV KEGSDNPFDIENATGKAAICICSYEFAARKEHELARIPWDLVVMDEAHKLRNIYKNDGAK TAKKLSGALSGRKKILLSATPLQNSILELYGLISVIDPHFFGDLASFKARYSRQNIDDAE LALLRVRLNKICNRTLRRQVQQEGGISFTRRHSITEDFRPTEDEEVLYKQVSSYLQRDDL LAIKSGARHLVTLVIRKILASSSTAIQGTLETMIHRLESKMPVLDALTDYENYDDYSDEE GIDDEDTIDPQALQAEIDQLKNYKTLAASITKNAKAEALLRVLDRAFTFTAELGGLRKAV IFTESVRTQTWLAQLLSESGYEGEVVLLNGSNSDAVSKKIYSDWLEKHQNSGRVSGSSTA DMKAALVEKFRDEGTLMICTEAGAEGINLQFCSLLINYDLPWNPQRVEQRIGRVHRYGQK HDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGASDDILGSIESGVDIERRIHEIYQH CRSDEQIEQEFNQLQDELKDQLENRENETRRSLFEHFDVDVVRNLKTRRTTTLAQLNDYQ ENLLLLAEMFLSDESDFQRSETGFRSRGKYFDVNWPIADEKDAEFFRPSQGYGKQLIDAA LHEGASLSTSPVCQKLHFIYQPRSGQLADVKLFCGKSGQLLLAKVSIGNQEQQREKLLTV AVTENGEVLAEETVSRLLRLPLSEITSVEEQPLLPALTTQCEVLRHSFIQQVERDNELYY NEEVEKLERWSEDRRIALDLRIKQLDAEIKEARKAARQLPSLKEKMEAKRALKVLERERD SIMLQYHDEKKKIEQEEDRLLEEVEQKLATEITSRQLFAVSWTLSSPSA >gi|223713524|gb|ACDM01000074.1| GENE 8 11455 - 11637 120 60 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3263 NR:ns ## KEGG: EC55989_3263 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 60 30 89 89 120 100.0 2e-26 MRRLPLMVGVIVGVMLAVGCHDRRAGVRTLLGDGVEQWGQKLPYDHWEFNFFTRKICRHW >gi|223713524|gb|ACDM01000074.1| GENE 9 11640 - 12158 198 172 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3262 NR:ns ## KEGG: EC55989_3262 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 172 26 197 197 357 100.0 7e-98 MVYLEDGDIRESFFRRLDPTEPSQSSVGKWSQHVGGFLASFNIGKALPVRMTVCWDSVID KKAYETEIWFSRDTWQQMLTAYPDTYRPGKIYYRNKMIIGLPPGGKVRVWLKDNRNPVVL QNPARQFTLTGDDMLICKNVPNKIDFSYIKANGYDPFIRDFIKEKPYPYGHW >gi|223713524|gb|ACDM01000074.1| GENE 10 12624 - 12887 241 87 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3261 NR:ns ## KEGG: EC55989_3261 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 87 1 87 87 163 100.0 1e-39 MANDTTPYLMVLLLNNDVWCKSREVVVLRNLIEQAWGKVLDEDNSITYLVVYPEVLTLVF DAANTYNAEPGVLEQTARAYIEITWCH Prediction of potential genes in microbial genomes Time: Mon May 16 19:20:42 2011 Seq name: gi|223713523|gb|ACDM01000075.1| Escherichia sp. 4_1_40B cont1.75, whole genome shotgun sequence Length of sequence - 146594 bp Number of predicted genes - 138, with homology - 138 Number of transcription units - 85, operones - 23 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1683 - 1904 100 ## EC55989_4689 hypothetical protein - TRNA 1817 - 1892 84.1 # Phe GAA 0 0 3 1 Op 3 3/0.568 - CDS 1999 - 2574 754 ## COG1309 Transcriptional regulator 4 1 Op 4 7/0.162 - CDS 2611 - 4308 1510 ## COG4232 Thiol:disulfide interchange protein 5 1 Op 5 5/0.297 - CDS 4284 - 4622 208 ## COG1324 Uncharacterized protein involved in tolerance to divalent cations - Term 4697 - 4728 5.5 6 2 Tu 1 . - CDS 4738 - 6039 1400 ## COG2704 Anaerobic C4-dicarboxylate transporter - Prom 6081 - 6140 4.7 - Term 6099 - 6130 4.1 7 3 Tu 1 . - CDS 6157 - 7593 1497 ## COG1027 Aspartate ammonia-lyase - Prom 7751 - 7810 5.7 + Prom 7814 - 7873 4.0 8 4 Tu 1 . + CDS 7930 - 8406 343 ## COG3030 Protein affecting phage T7 exclusion by the F plasmid + Term 8415 - 8459 -0.4 9 5 Tu 1 . - CDS 8422 - 9678 1159 ## COG0531 Amino acid transporters - Prom 9743 - 9802 2.3 + Prom 9775 - 9834 6.0 10 6 Op 1 41/0.000 + CDS 9954 - 10247 479 ## COG0234 Co-chaperonin GroES (HSP10) 11 6 Op 2 . + CDS 10291 - 11937 2383 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 11967 - 12004 6.0 + Prom 11965 - 12024 3.8 12 7 Tu 1 . + CDS 12075 - 12428 359 ## ECIAI1_4377 hypothetical protein + Term 12493 - 12534 -0.2 - Term 12485 - 12517 -0.2 13 8 Tu 1 . - CDS 12631 - 13500 882 ## JW4105 hypothetical protein - Prom 13624 - 13683 5.8 14 9 Tu 1 . - CDS 13895 - 14923 881 ## COG1509 Lysine 2,3-aminomutase - Prom 14968 - 15027 3.3 + Prom 14862 - 14921 3.7 15 10 Tu 1 . + CDS 14965 - 15531 627 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 15538 - 15578 10.5 + Prom 15738 - 15797 4.2 16 11 Tu 1 . + CDS 15819 - 15965 120 ## COG5510 Predicted small secreted protein + Term 15973 - 16010 6.2 + Prom 16006 - 16065 3.4 17 12 Tu 1 . + CDS 16141 - 16458 410 ## COG2076 Membrane transporters of cations and cationic drugs 18 13 Op 1 3/0.568 - CDS 16455 - 16988 721 ## COG3040 Bacterial lipocalin - Prom 17009 - 17068 2.0 - Term 17037 - 17066 2.1 19 13 Op 2 3/0.568 - CDS 17077 - 18210 853 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 18219 - 18253 8.1 20 14 Op 1 10/0.135 - CDS 18273 - 18632 423 ## COG3080 Fumarate reductase subunit D 21 14 Op 2 10/0.135 - CDS 18643 - 19038 514 ## COG3029 Fumarate reductase subunit C 22 14 Op 3 36/0.000 - CDS 19049 - 19783 876 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 23 14 Op 4 . - CDS 19776 - 21584 2006 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 21749 - 21808 3.4 + Prom 21707 - 21766 7.1 24 15 Tu 1 . + CDS 21909 - 22886 992 ## COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) + Term 22919 - 22947 -1.0 + Prom 22925 - 22984 3.9 25 16 Op 1 . + CDS 23150 - 24607 1394 ## COG0531 Amino acid transporters 26 16 Op 2 . + CDS 24659 - 24973 262 ## JW4118 hypothetical protein 27 16 Op 3 . + CDS 24970 - 25284 261 ## JW4119 conserved inner membrane protein - Term 25186 - 25224 -0.1 28 17 Op 1 5/0.297 - CDS 25313 - 28636 3632 ## COG3264 Small-conductance mechanosensitive channel 29 17 Op 2 2/0.811 - CDS 28658 - 29626 1019 ## COG0688 Phosphatidylserine decarboxylase - Prom 29657 - 29716 2.2 30 17 Op 3 . - CDS 29723 - 30775 963 ## COG1162 Predicted GTPases - Prom 30855 - 30914 2.7 + Prom 30768 - 30827 1.9 31 18 Tu 1 . + CDS 30870 - 31415 786 ## COG1949 Oligoribonuclease (3'->5' exoribonuclease) + TRNA 31626 - 31701 93.7 # Gly GCC 0 0 + TRNA 31738 - 31813 93.7 # Gly GCC 0 0 + TRNA 31849 - 31924 93.7 # Gly GCC 0 0 32 19 Tu 1 . - CDS 32194 - 33333 915 ## COG1600 Uncharacterized Fe-S protein - Prom 33358 - 33417 4.9 + Prom 33242 - 33301 2.8 33 20 Op 1 6/0.189 + CDS 33347 - 34879 1051 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 34 20 Op 2 13/0.054 + CDS 34851 - 35312 554 ## COG0802 Predicted ATPase or kinase 35 20 Op 3 10/0.135 + CDS 35331 - 36668 1079 ## COG0860 N-acetylmuramoyl-L-alanine amidase 36 20 Op 4 12/0.054 + CDS 36678 - 38525 1717 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 37 20 Op 5 15/0.000 + CDS 38563 - 39468 512 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 38 20 Op 6 16/0.000 + CDS 39554 - 39862 285 ## COG1923 Uncharacterized host factor I protein + Term 39883 - 39928 6.2 39 20 Op 7 8/0.135 + CDS 39938 - 41218 733 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 40 20 Op 8 21/0.000 + CDS 41304 - 42563 1450 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 41 20 Op 9 11/0.054 + CDS 42566 - 43570 1342 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 43600 - 43638 7.2 42 21 Tu 1 6/0.189 + CDS 43652 - 43849 247 ## COG3242 Uncharacterized protein conserved in bacteria + Prom 43870 - 43929 4.0 43 22 Tu 1 . + CDS 43953 - 45251 1520 ## COG0104 Adenylosuccinate synthase + Term 45306 - 45352 9.2 + Prom 45377 - 45436 4.2 44 23 Op 1 2/0.811 + CDS 45528 - 45881 246 ## COG1959 Predicted transcriptional regulator 45 23 Op 2 7/0.162 + CDS 45920 - 48361 1250 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 + Prom 48442 - 48501 7.1 46 24 Tu 1 . + CDS 48541 - 49272 455 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 49287 - 49328 7.4 + Prom 49285 - 49344 7.2 47 25 Op 1 6/0.189 + CDS 49399 - 49800 370 ## COG3789 Uncharacterized protein conserved in bacteria 48 25 Op 2 . + CDS 49819 - 50517 908 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription + Term 50523 - 50561 6.1 49 26 Op 1 . + CDS 50568 - 51227 705 ## JW4141 conserved hypothetical protein 50 26 Op 2 5/0.297 + CDS 51245 - 51643 362 ## COG3766 Predicted membrane protein 51 26 Op 3 5/0.297 + CDS 51653 - 52291 350 ## COG5463 Predicted integral membrane protein 52 26 Op 4 1/0.919 + CDS 52294 - 53457 1164 ## COG0754 Glutathionylspermidine synthase 53 26 Op 5 . + CDS 53541 - 55166 1239 ## COG1960 Acyl-CoA dehydrogenases 54 27 Tu 1 . - CDS 55283 - 55570 247 ## SSON_4370 hypothetical protein - Prom 55635 - 55694 4.3 55 28 Tu 1 . - CDS 55707 - 56036 221 ## APECO1_2203 hypothetical protein - Prom 56063 - 56122 2.6 + Prom 56001 - 56060 3.7 56 29 Tu 1 . + CDS 56218 - 56967 510 ## COG1073 Hydrolases of the alpha/beta superfamily - Term 56679 - 56731 3.3 57 30 Tu 1 . - CDS 56964 - 57719 855 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 57744 - 57803 3.5 - Term 57766 - 57817 11.1 58 31 Tu 1 . - CDS 57827 - 58891 1277 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 59060 - 59119 6.3 + Prom 59071 - 59130 8.1 59 32 Op 1 11/0.054 + CDS 59246 - 60643 1767 ## COG3037 Uncharacterized protein conserved in bacteria 60 32 Op 2 13/0.054 + CDS 60659 - 60964 336 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 61 32 Op 3 8/0.135 + CDS 60974 - 61438 617 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 62 32 Op 4 9/0.135 + CDS 61452 - 62102 920 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 63 32 Op 5 8/0.135 + CDS 62112 - 62966 1072 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 64 32 Op 6 . + CDS 62966 - 63652 822 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 63740 - 63779 0.3 - Term 63710 - 63740 3.0 65 33 Tu 1 . - CDS 63781 - 64056 313 ## LF82_3468 UPF0379 protein YjfY - Prom 64109 - 64168 4.0 + Prom 64233 - 64292 2.9 66 34 Tu 1 . + CDS 64384 - 64779 681 ## PROTEIN SUPPORTED gi|188495956|ref|ZP_03003226.1| ribosomal protein S6 67 35 Op 1 27/0.000 + CDS 65105 - 65332 385 ## PROTEIN SUPPORTED gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18 68 35 Op 2 . + CDS 65374 - 65823 720 ## PROTEIN SUPPORTED gi|15804792|ref|NP_290833.1| 50S ribosomal protein L9 + Term 65842 - 65885 11.1 - Term 65893 - 65923 0.1 69 36 Tu 1 9/0.135 - CDS 65935 - 66906 679 ## PROTEIN SUPPORTED gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 - Term 66917 - 66947 3.0 70 37 Op 1 11/0.054 - CDS 66959 - 68260 1260 ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 71 37 Op 2 . - CDS 68303 - 68779 268 ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3 72 37 Op 3 . - CDS 68800 - 70881 1624 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 73 37 Op 4 3/0.568 - CDS 70878 - 72419 1696 ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase 74 37 Op 5 1/0.919 - CDS 72429 - 73205 780 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 75 37 Op 6 . - CDS 73215 - 74057 730 ## COG1082 Sugar phosphate isomerases/epimerases 76 37 Op 7 . - CDS 74067 - 74858 869 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Prom 74953 - 75012 4.1 77 38 Tu 1 . + CDS 75071 - 75718 543 ## COG1309 Transcriptional regulator + Term 75782 - 75823 2.1 78 39 Tu 1 . - CDS 75702 - 76340 495 ## COG3061 Cell envelope opacity-associated protein A - Prom 76365 - 76424 2.8 + Prom 76428 - 76487 4.9 79 40 Tu 1 . + CDS 76559 - 77179 940 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Prom 77240 - 77299 3.7 80 41 Tu 1 . + CDS 77488 - 78900 1462 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 78913 - 78950 8.2 81 42 Tu 1 . - CDS 78945 - 79607 893 ## COG2846 Regulator of cell morphogenesis and NO signaling - Prom 79630 - 79689 5.3 82 43 Tu 1 . - CDS 79715 - 80680 896 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 83 44 Tu 1 . - CDS 80789 - 81649 838 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 81723 - 81782 3.3 84 45 Tu 1 . + CDS 81648 - 82118 456 ## COG1733 Predicted transcriptional regulators + Term 82183 - 82221 4.2 - Term 81997 - 82036 3.2 85 46 Tu 1 . - CDS 82241 - 84184 2052 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 84234 - 84293 5.1 + Prom 84278 - 84337 4.3 86 47 Tu 1 . + CDS 84374 - 85114 736 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase + Term 85123 - 85160 5.1 87 48 Tu 1 . - CDS 85104 - 85661 669 ## COG3054 Predicted transcriptional regulator - Prom 85835 - 85894 5.4 + Prom 85775 - 85834 5.0 88 49 Tu 1 . + CDS 85986 - 86192 271 ## G2583_5047 hypothetical protein + Term 86217 - 86249 6.3 - Term 86205 - 86237 6.3 89 50 Tu 1 . - CDS 86254 - 87597 1536 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 87701 - 87760 3.4 - Term 87762 - 87798 -1.0 90 51 Tu 1 . - CDS 87920 - 88558 676 ## COG0225 Peptide methionine sulfoxide reductase - Prom 88614 - 88673 3.3 91 52 Op 1 . + CDS 88633 - 88794 65 ## EcSMS35_4698 hypothetical protein 92 52 Op 2 16/0.000 + CDS 88764 - 90497 1642 ## COG0729 Outer membrane protein 93 52 Op 3 6/0.189 + CDS 90494 - 94273 4084 ## COG2911 Uncharacterized protein conserved in bacteria 94 52 Op 4 . + CDS 94276 - 94617 230 ## COG2105 Uncharacterized conserved protein + Term 94627 - 94662 4.1 95 53 Tu 1 . - CDS 94996 - 95526 717 ## COG0221 Inorganic pyrophosphatase - Prom 95623 - 95682 4.8 + Prom 95608 - 95667 4.3 96 54 Op 1 16/0.000 + CDS 95836 - 96792 1133 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 96850 - 96898 0.1 + Prom 96844 - 96903 2.7 97 54 Op 2 21/0.000 + CDS 96932 - 98434 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 98 54 Op 3 11/0.054 + CDS 98448 - 99470 1088 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 99 54 Op 4 . + CDS 99457 - 100452 1147 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components - Term 100444 - 100477 6.1 100 55 Tu 1 . - CDS 100485 - 101483 1113 ## COG0158 Fructose-1,6-bisphosphatase - Prom 101539 - 101598 2.2 + Prom 101431 - 101490 4.9 101 56 Tu 1 . + CDS 101659 - 103032 1714 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 103080 - 103131 5.9 102 57 Tu 1 . - CDS 103188 - 103739 769 ## COG3028 Uncharacterized protein conserved in bacteria - Prom 103760 - 103819 8.3 + Prom 103731 - 103790 2.9 103 58 Op 1 . + CDS 103834 - 105186 1396 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs + Prom 105288 - 105347 2.4 104 58 Op 2 . + CDS 105369 - 105755 568 ## COG3783 Soluble cytochrome b562 + Term 105764 - 105807 11.7 - Term 105578 - 105619 -0.5 105 59 Tu 1 . - CDS 105800 - 106264 430 ## COG0602 Organic radical activating enzymes - Prom 106328 - 106387 4.3 - Term 106302 - 106346 4.1 106 60 Tu 1 . - CDS 106422 - 108560 2517 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 108739 - 108798 6.5 - Term 108904 - 108941 4.4 107 61 Op 1 9/0.135 - CDS 108954 - 110609 1396 ## COG0366 Glycosidases 108 61 Op 2 7/0.162 - CDS 110659 - 112077 1577 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 112129 - 112188 4.4 - Term 112133 - 112159 -1.0 109 62 Tu 1 . - CDS 112199 - 113146 808 ## COG1609 Transcriptional regulators - Prom 113180 - 113239 7.1 110 63 Tu 1 . + CDS 113525 - 116221 2822 ## COG0474 Cation transport ATPase + Term 116344 - 116380 2.4 111 64 Tu 1 6/0.189 - CDS 116427 - 116813 551 ## COG0251 Putative translation initiation inhibitor, yjgF family - Term 116828 - 116867 5.0 112 65 Op 1 19/0.000 - CDS 116886 - 117347 526 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 113 65 Op 2 . - CDS 117360 - 118295 1006 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 114 66 Tu 1 . - CDS 118714 - 119109 245 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 119177 - 119236 2.0 - Term 119182 - 119221 2.1 115 67 Tu 1 . - CDS 119240 - 119953 274 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 119977 - 120036 5.5 + Prom 119939 - 119998 5.0 116 68 Tu 1 . + CDS 120024 - 120617 310 ## COG1309 Transcriptional regulator + Prom 120673 - 120732 2.6 117 69 Tu 1 . + CDS 120762 - 121214 582 ## COG2731 Beta-galactosidase, beta subunit + Term 121223 - 121262 4.3 + Prom 121229 - 121288 8.0 118 70 Tu 1 . + CDS 121337 - 122848 718 ## ECO26_5422 hypothetical protein + Term 122975 - 123014 2.0 - Term 122959 - 123004 2.7 119 71 Tu 1 . - CDS 123017 - 124030 1000 ## COG0078 Ornithine carbamoyltransferase - Prom 124064 - 124123 6.3 + Prom 124016 - 124075 3.5 120 72 Tu 1 . + CDS 124192 - 124608 722 ## COG3076 Uncharacterized protein conserved in bacteria + Term 124623 - 124660 1.6 - Term 124611 - 124648 2.4 121 73 Tu 1 . - CDS 124654 - 125157 570 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 125285 - 125344 5.3 + Prom 125129 - 125188 5.7 122 74 Op 1 . + CDS 125350 - 125781 262 ## COG4269 Predicted membrane protein 123 74 Op 2 . + CDS 125806 - 126546 305 ## COG4269 Predicted membrane protein + Term 126558 - 126591 5.2 - Term 126543 - 126580 7.8 124 75 Op 1 5/0.297 - CDS 126600 - 129455 3483 ## COG0525 Valyl-tRNA synthetase 125 75 Op 2 12/0.054 - CDS 129455 - 129898 417 ## COG2927 DNA polymerase III, chi subunit - Prom 130022 - 130081 2.8 126 76 Tu 1 . - CDS 130252 - 131763 1681 ## COG0260 Leucyl aminopeptidase - Prom 131922 - 131981 5.4 + Prom 131943 - 132002 3.8 127 77 Op 1 22/0.000 + CDS 132051 - 133130 962 ## COG0795 Predicted permeases 128 77 Op 2 . + CDS 133130 - 134212 1440 ## COG0795 Predicted permeases + Term 134217 - 134254 2.4 - Term 134209 - 134235 -1.0 129 78 Op 1 1/0.919 - CDS 134331 - 135833 1403 ## COG0433 Predicted ATPase - Prom 135853 - 135912 3.8 130 78 Op 2 . - CDS 135963 - 136982 1204 ## COG1064 Zn-dependent alcohol dehydrogenases - Prom 137203 - 137262 80.3 + TRNA 137178 - 137262 79.1 # Leu CAA 0 0 + Prom 137180 - 137239 80.3 131 79 Tu 1 . + CDS 137353 - 139263 621 ## COG0582 Integrase + Term 139293 - 139334 7.9 - Term 139111 - 139152 1.4 132 80 Tu 1 . - CDS 139396 - 139728 155 ## UTI89_C0287 hypothetical protein + Prom 141187 - 141246 2.7 133 81 Op 1 . + CDS 141393 - 141953 405 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 134 81 Op 2 . + CDS 141967 - 142812 150 ## GAU_0079 hypothetical protein + Term 142846 - 142883 -0.7 135 82 Tu 1 . - CDS 142873 - 143367 278 ## Pecwa_3422 hypothetical protein - Prom 143492 - 143551 3.3 + Prom 143451 - 143510 3.1 136 83 Tu 1 . + CDS 143608 - 144072 235 ## COG1396 Predicted transcriptional regulators + Term 144184 - 144232 2.7 137 84 Tu 1 . + CDS 145350 - 145934 193 ## ECS88_4853 conserved hypothetical protein, putative phage-related protein + Term 145953 - 145986 3.4 138 85 Tu 1 . - CDS 145983 - 146555 75 ## ECS88_4854 putative lysogenic conversion protein from bacteriophage P2-EC53 Predicted protein(s) >gi|223713523|gb|ACDM01000075.1| GENE 1 357 - 1619 370 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 49 401 60 402 406 147 28 4e-34 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK >gi|223713523|gb|ACDM01000075.1| GENE 2 1683 - 1904 100 73 aa, chain - ## HITS:1 COG:no KEGG:EC55989_4689 NR:ns ## KEGG: EC55989_4689 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 73 10 82 82 127 93.0 2e-28 MRPVARIAQSVEQGIENPRVLGSIPSPGTKFISTDLHGGPFFIPGRHDLSVLPPNQFYRT QPDSPHINLIVWV >gi|223713523|gb|ACDM01000075.1| GENE 3 1999 - 2574 754 191 aa, chain - ## HITS:1 COG:ECs5116 KEGG:ns NR:ns ## COG: ECs5116 COG1309 # Protein_GI_number: 15834370 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 191 9 199 199 368 99.0 1e-102 MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPDKEAILYDALRYLSQQI DVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIAACTFYPDPGHPIHQLADQ QKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRMLVNRSQADVDTAHRLAEDILR FARCRQGGALT >gi|223713523|gb|ACDM01000075.1| GENE 4 2611 - 4308 1510 565 aa, chain - ## HITS:1 COG:dsbD KEGG:ns NR:ns ## COG: dsbD COG4232 # Protein_GI_number: 16131961 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Escherichia coli K12 # 1 565 1 565 565 1102 100.0 0 MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYL YRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQ GCADAGFCYPPETKTVPLSEVVANNAAPQPVSVPQQEQPTAQLPFSALWALLIGIGIAFT PCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMALTYTALGLVVAAAGLQFQAALQ HPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTLMSNRQQGGSPGGVFVMGAIAGLI CSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRLLPKSGPWMEQ VKTAFGFVILALPVFLLERVIGDVWGLRLWSALGVAFFGWAFITSLQAKRGWMRIVQIIL LAAALVSVRPLQDWAFGATHTAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWC VACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQ EHPQARVTGFMDAETFSAHLRDRQP >gi|223713523|gb|ACDM01000075.1| GENE 5 4284 - 4622 208 112 aa, chain - ## HITS:1 COG:ECs5118 KEGG:ns NR:ns ## COG: ECs5118 COG1324 # Protein_GI_number: 15834372 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tolerance to divalent cations # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 198 100.0 2e-51 MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEY EVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR >gi|223713523|gb|ACDM01000075.1| GENE 6 4738 - 6039 1400 433 aa, chain - ## HITS:1 COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 433 1 433 433 705 100.0 0 MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAI SAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAK EQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVL VMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIY AIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICI LGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALA LNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVAL AVCFGFVLGSFML >gi|223713523|gb|ACDM01000075.1| GENE 7 6157 - 7593 1497 478 aa, chain - ## HITS:1 COG:ECs5120 KEGG:ns NR:ns ## COG: ECs5120 COG1027 # Protein_GI_number: 15834374 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Escherichia coli O157:H7 # 1 478 16 493 493 932 100.0 0 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVE FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESEQ >gi|223713523|gb|ACDM01000075.1| GENE 8 7930 - 8406 343 158 aa, chain + ## HITS:1 COG:yjeG KEGG:ns NR:ns ## COG: yjeG COG3030 # Protein_GI_number: 16132265 # Func_class: R General function prediction only # Function: Protein affecting phage T7 exclusion by the F plasmid # Organism: Escherichia coli K12 # 1 158 1 158 158 241 100.0 3e-64 MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQ KMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSR MPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD >gi|223713523|gb|ACDM01000075.1| GENE 9 8422 - 9678 1159 418 aa, chain - ## HITS:1 COG:yjeH KEGG:ns NR:ns ## COG: yjeH COG0531 # Protein_GI_number: 16131966 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 418 1 418 418 702 100.0 0 MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPVLIILVFPIAIVFA ILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPAALQIAAGFGQAMFGWHSW QLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIVAIWWAGDIKPANIPFPAPGN IELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWGCTVVVL HFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGYLACFASLNIYIQSFARLVWSQAQH NPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIHALEINLDALIIYANGIFIMIYLLCML AGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKSLYALIMLAGLWLLLPKRKTPENGITT >gi|223713523|gb|ACDM01000075.1| GENE 10 9954 - 10247 479 97 aa, chain + ## HITS:1 COG:ECs5123 KEGG:ns NR:ns ## COG: ECs5123 COG0234 # Protein_GI_number: 15834377 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Escherichia coli O157:H7 # 1 97 1 97 97 158 100.0 2e-39 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVK VGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA >gi|223713523|gb|ACDM01000075.1| GENE 11 10291 - 11937 2383 548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1 548 1 547 547 922 87 0.0 MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGI DKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDG TGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTV ISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDY DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI RVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNA ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGMGG MGGMGGMM >gi|223713523|gb|ACDM01000075.1| GENE 12 12075 - 12428 359 117 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_4377 NR:ns ## KEGG: ECIAI1_4377 # Name: yjeI # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 117 1 117 117 198 100.0 6e-50 MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQ HGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN >gi|223713523|gb|ACDM01000075.1| GENE 13 12631 - 13500 882 289 aa, chain - ## HITS:1 COG:no KEGG:JW4105 NR:ns ## KEGG: JW4105 # Name: yjeJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 289 1 289 289 557 100.0 1e-157 MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELRDLLIALESRLHQKHKL DAAAHLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNTLELTDNQGENLTFVLTLH DGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSLLDFLPLYDVDCQDNGNLEYD TYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKTREATPGKEIEAITRRMLDFSPR LKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHLRVQSTSKTAPQAK >gi|223713523|gb|ACDM01000075.1| GENE 14 13895 - 14923 881 342 aa, chain - ## HITS:1 COG:yjeK KEGG:ns NR:ns ## COG: yjeK COG1509 # Protein_GI_number: 16131971 # Func_class: E Amino acid transport and metabolism # Function: Lysine 2,3-aminomutase # Organism: Escherichia coli K12 # 1 342 1 342 342 683 100.0 0 MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDAEEKLLAGRSAKKLFALRVPRSFI DRMEKGNPDDPLLRQVLTSQDEFVIAPGFSTDPLEEQHSVVPGLLHKYHNRALLLVKGGC AVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEMIFSGGDPLMAKDHELDWLLT QLEAIPHIKRLRIHSRLPIVIPARITEALVECFARSTLQILLVNHINHANEVDETFRQAM AKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSD DEARQIMRELLTLVSGYLVPKLAREIGGEPSKTPLDLQLRQQ >gi|223713523|gb|ACDM01000075.1| GENE 15 14965 - 15531 627 188 aa, chain + ## HITS:1 COG:ECs5128 KEGG:ns NR:ns ## COG: ECs5128 COG0231 # Protein_GI_number: 15834382 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 377 100.0 1e-105 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTD SAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNG QPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRS GEYVSRVK >gi|223713523|gb|ACDM01000075.1| GENE 16 15819 - 15965 120 48 aa, chain + ## HITS:1 COG:STM4336 KEGG:ns NR:ns ## COG: STM4336 COG5510 # Protein_GI_number: 16767585 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Salmonella typhimurium LT2 # 1 48 1 48 48 62 95.0 2e-10 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ >gi|223713523|gb|ACDM01000075.1| GENE 17 16141 - 16458 410 105 aa, chain + ## HITS:1 COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 105 51 155 155 160 100.0 4e-40 MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKSLPVGTAYA VWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH >gi|223713523|gb|ACDM01000075.1| GENE 18 16455 - 16988 721 177 aa, chain - ## HITS:1 COG:ECs5130 KEGG:ns NR:ns ## COG: ECs5130 COG3040 # Protein_GI_number: 15834384 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Bacterial lipocalin # Organism: Escherichia coli O157:H7 # 1 177 1 177 177 368 100.0 1e-102 MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKV TATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIA LDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS >gi|223713523|gb|ACDM01000075.1| GENE 19 17077 - 18210 853 377 aa, chain - ## HITS:1 COG:ampC KEGG:ns NR:ns ## COG: ampC COG1680 # Protein_GI_number: 16131975 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 1 377 1 377 377 739 100.0 0 MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWG YADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGI TLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVK PSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVK STIEDMARWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSII NGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNY PNPARVDAAWQILNALQ >gi|223713523|gb|ACDM01000075.1| GENE 20 18273 - 18632 423 119 aa, chain - ## HITS:1 COG:ECs5132 KEGG:ns NR:ns ## COG: ECs5132 COG3080 # Protein_GI_number: 15834386 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit D # Organism: Escherichia coli O157:H7 # 1 119 1 119 119 208 100.0 2e-54 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI >gi|223713523|gb|ACDM01000075.1| GENE 21 18643 - 19038 514 131 aa, chain - ## HITS:1 COG:ECs5133 KEGG:ns NR:ns ## COG: ECs5133 COG3029 # Protein_GI_number: 15834387 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit C # Organism: Escherichia coli O157:H7 # 1 131 1 131 131 225 100.0 2e-59 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA TIVILFVALYW >gi|223713523|gb|ACDM01000075.1| GENE 22 19049 - 19783 876 244 aa, chain - ## HITS:1 COG:ECs5134 KEGG:ns NR:ns ## COG: ECs5134 COG0479 # Protein_GI_number: 15834388 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Escherichia coli O157:H7 # 1 244 1 244 244 516 100.0 1e-146 MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRM AICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPY IIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRY NEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIAT LKPR >gi|223713523|gb|ACDM01000075.1| GENE 23 19776 - 21584 2006 602 aa, chain - ## HITS:1 COG:frdA KEGG:ns NR:ns ## COG: frdA COG1053 # Protein_GI_number: 16131979 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Escherichia coli K12 # 1 602 1 602 602 1170 100.0 0 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH DSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGM KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR KGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG GIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKL AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGC TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKA NG >gi|223713523|gb|ACDM01000075.1| GENE 24 21909 - 22886 992 325 aa, chain + ## HITS:1 COG:ECs5136 KEGG:ns NR:ns ## COG: ECs5136 COG2269 # Protein_GI_number: 15834390 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Truncated, possibly inactive, lysyl-tRNA synthetase (class II) # Organism: Escherichia coli O157:H7 # 1 325 11 335 335 662 100.0 0 MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRF VGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRP HYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN VADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYY KGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALG VDRLVMLALGAETLAEVIAFSVDRA >gi|223713523|gb|ACDM01000075.1| GENE 25 23150 - 24607 1394 485 aa, chain + ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 485 30 514 514 860 100.0 0 MIFTSVFGFANSPSAYYLMGYSAIPFYIFSALLFFIPFALMMAEMGAAYRKEEGGIYSWM NNSVGPRFAFIGTFMWFSSYIIWMVSTSAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVG LLAVAWMILVTVVASKGINKIARITAVGGIAVMCLNLVLLLVSITILLLNGGHFAQDINF LASPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFAKGIVFAAIVISIGY SLAIFLWGVSTNWQQVLSNGSVNLGNITYVLMKSLGMTLGNALHLSPEASLSLGVWFARI TGLSMFLAYTGAFFTLCYSPLKAIIQGTPKALWPEPMTRLNAMGMPSIAMWMQCGLVTVF ILLVSFGGGTASAFFNKLTLMANVSMTLPYLFLALAFPFFKARQDLDRPFVIFKTHLSAM IATVVVVLVVTFANVFTIIQPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRVAKNP QWAVE >gi|223713523|gb|ACDM01000075.1| GENE 26 24659 - 24973 262 104 aa, chain + ## HITS:1 COG:no KEGG:JW4118 NR:ns ## KEGG: JW4118 # Name: yjeN # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 104 1 104 104 211 100.0 5e-54 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL >gi|223713523|gb|ACDM01000075.1| GENE 27 24970 - 25284 261 104 aa, chain + ## HITS:1 COG:no KEGG:JW4119 NR:ns ## KEGG: JW4119 # Name: yjeO # Def: conserved inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 104 1 104 104 169 100.0 2e-41 MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMT LPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL >gi|223713523|gb|ACDM01000075.1| GENE 28 25313 - 28636 3632 1107 aa, chain - ## HITS:1 COG:yjeP KEGG:ns NR:ns ## COG: yjeP COG3264 # Protein_GI_number: 16131984 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli K12 # 1 1107 1 1107 1107 2058 100.0 0 MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERK GSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMSTDALNQEILQVSSQLLDK SRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDS ARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERA LESTELLAENSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVRQAL NTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPLL RQIHQADGQPLTAEQNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSNGQLEDALKE VNEATHRYLFWTSDVRPMTIAWPLEIAQDLRRLISLDTFSQLGKASVMMLTSKETILPLF GALILVGCSIYSRRYFTRFLERSAAKVGKVTQDHFWLTLRTLFWSILVASPLPVLWMTLG YGLREAWPYPLAVAIGDGVTATVPLLWVVMICATFARPNGLFIAHFGWPRERVSRGMRYY LMSIGLIVPLIMALMMFDNLDDREFSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKE GSGDNITNHMLWNMMIGAPLVAILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRR WMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLR LVRSILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILV FIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKL QWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTIS DWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLV IDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQ MRLESLNGKQTGRTLTSAGKGRQAGSL >gi|223713523|gb|ACDM01000075.1| GENE 29 28658 - 29626 1019 322 aa, chain - ## HITS:1 COG:ECs5139 KEGG:ns NR:ns ## COG: ECs5139 COG0688 # Protein_GI_number: 15834393 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Escherichia coli O157:H7 # 1 322 1 322 322 664 100.0 0 MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY RTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAG NYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPL PAEEIEAEHDASPLVDDKKDQV >gi|223713523|gb|ACDM01000075.1| GENE 30 29723 - 30775 963 350 aa, chain - ## HITS:1 COG:yjeQ KEGG:ns NR:ns ## COG: yjeQ COG1162 # Protein_GI_number: 16131986 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Escherichia coli K12 # 14 350 1 337 337 692 99.0 0 MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGD VHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA ANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIY RNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDIS DNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYR DCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD >gi|223713523|gb|ACDM01000075.1| GENE 31 30870 - 31415 786 181 aa, chain + ## HITS:1 COG:orn KEGG:ns NR:ns ## COG: orn COG1949 # Protein_GI_number: 16131987 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Escherichia coli K12 # 1 181 24 204 204 367 100.0 1e-102 MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDD WNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM PELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIK L >gi|223713523|gb|ACDM01000075.1| GENE 32 32194 - 33333 915 379 aa, chain - ## HITS:1 COG:yjeS KEGG:ns NR:ns ## COG: yjeS COG1600 # Protein_GI_number: 16131988 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1 379 1 379 379 784 100.0 0 MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWLDKQYHGEMDWMARHGM LRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVSRYALGRDYHKLLRNRLKK LGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKHSLILNREAGSFFFLGELLVD IPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARRCISYLTIELEGAIPEELRPLMG NRIYGCDDCQLICPWNRYSQLTTEEDFSPRKPLHAPELIELFAWSEEKFLKVTEGSAIRR IGHLRWLRNIAVALGNAPWDETILTALESRKGEHPLLDEHIAWAIAQQIERRNACIVEVQ LPKKQRLVRVIEKGLPRDA >gi|223713523|gb|ACDM01000075.1| GENE 33 33347 - 34879 1051 510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 8 494 3 490 490 409 44 1e-113 MKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLRAGEAAFQVCRSAYPDARHWLV LCGHGNNGGDGYVVARLAKAVGIEVTLLAQESDKPLPEEAALAREAWLNAGGEIHASNIV WPESVDLIVDALLGTGLRQAPRESISQLIDHANSHPAPIVAVDIPSGLLAETGATPGAVI NADHTITFIALKPGLLTGKARDVTGQLHFDSLGLDSWLAGQETKIQRFSAEQLSHWLKPR RPTSHKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTARPELM VHELTMDSLTESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD KRHNRVITPHPGEAARLLGCSVAEIESDRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDAL GIIDAGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGM LATDLFSTLQRIVNPEVTDKNHDESSNSAP >gi|223713523|gb|ACDM01000075.1| GENE 34 34851 - 35312 554 153 aa, chain + ## HITS:1 COG:ECs5144 KEGG:ns NR:ns ## COG: ECs5144 COG0802 # Protein_GI_number: 15834398 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Escherichia coli O157:H7 # 1 153 1 153 153 313 100.0 1e-85 MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKS PTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLPDP DVEIHIDYQAQGREARVSAVSSAGELLLARLAG >gi|223713523|gb|ACDM01000075.1| GENE 35 35331 - 36668 1079 445 aa, chain + ## HITS:1 COG:amiB KEGG:ns NR:ns ## COG: amiB COG0860 # Protein_GI_number: 16131991 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli K12 # 1 445 1 445 445 817 100.0 0 MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVA LDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYT VVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRP AARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL TRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLE QHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHK RRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHP MQSAPQGATAQTASTVTTPDRTLPN >gi|223713523|gb|ACDM01000075.1| GENE 36 36678 - 38525 1717 615 aa, chain + ## HITS:1 COG:mutL KEGG:ns NR:ns ## COG: mutL COG0323 # Protein_GI_number: 16131992 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Escherichia coli K12 # 1 615 1 615 615 1161 99.0 0 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVC AQPLLIPLRLKVSAEEKSALEKAQPALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIP ELIGYLAKQSVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERLCPQLVKTPPGGLL QSVDLHPAIKALKDE >gi|223713523|gb|ACDM01000075.1| GENE 37 38563 - 39468 512 301 aa, chain + ## HITS:1 COG:miaA KEGG:ns NR:ns ## COG: miaA COG0324 # Protein_GI_number: 16131993 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Escherichia coli K12 # 1 301 16 316 316 580 100.0 1e-165 MGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDP SQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQ QAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPY QVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMW SYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIA G >gi|223713523|gb|ACDM01000075.1| GENE 38 39554 - 39862 285 102 aa, chain + ## HITS:1 COG:ECs5148 KEGG:ns NR:ns ## COG: ECs5148 COG1923 # Protein_GI_number: 15834402 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Escherichia coli O157:H7 # 1 102 1 102 102 177 100.0 5e-45 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE >gi|223713523|gb|ACDM01000075.1| GENE 39 39938 - 41218 733 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 50 398 55 407 425 286 46 3e-76 MFDRYDAGEQAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGE GKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEG KLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLER VEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRID VADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNT VLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQALTER LSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCKQEPA LIDYLI >gi|223713523|gb|ACDM01000075.1| GENE 40 41304 - 42563 1450 419 aa, chain + ## HITS:1 COG:ECs5150 KEGG:ns NR:ns ## COG: ECs5150 COG0330 # Protein_GI_number: 15834404 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1 419 1 419 419 672 100.0 0 MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKG TGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKEAERGVVTRFGKFSHLVEP GLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTNPEKYLYSVTSP DDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQA ARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILE AQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGNTRKVLVNDKGGNLMVLPLDQMLK GGNAPAAKSDNGASNLLRLPPASSSTTSGASNTSSTSQGDIMDQRRANAQRNDYQRQGE >gi|223713523|gb|ACDM01000075.1| GENE 41 42566 - 43570 1342 334 aa, chain + ## HITS:1 COG:ECs5151 KEGG:ns NR:ns ## COG: ECs5151 COG0330 # Protein_GI_number: 15834405 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 566 100.0 1e-161 MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIE TVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLK RKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAE RVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRS QGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSL RAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR >gi|223713523|gb|ACDM01000075.1| GENE 42 43652 - 43849 247 65 aa, chain + ## HITS:1 COG:ECs5152 KEGG:ns NR:ns ## COG: ECs5152 COG3242 # Protein_GI_number: 15834406 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 65 1 65 65 80 100.0 6e-16 MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYML RKTIG >gi|223713523|gb|ACDM01000075.1| GENE 43 43953 - 45251 1520 432 aa, chain + ## HITS:1 COG:ECs5153 KEGG:ns NR:ns ## COG: ECs5153 COG0104 # Protein_GI_number: 15834407 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 867 100.0 0 MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGI LRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREK ARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR TETMILRDPFDA >gi|223713523|gb|ACDM01000075.1| GENE 44 45528 - 45881 246 117 aa, chain + ## HITS:1 COG:ECs5154 KEGG:ns NR:ns ## COG: ECs5154 COG1959 # Protein_GI_number: 15834408 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 117 25 141 141 231 100.0 3e-61 MTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELE PLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE >gi|223713523|gb|ACDM01000075.1| GENE 45 45920 - 48361 1250 813 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 21 728 4 705 730 486 37 1e-136 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE >gi|223713523|gb|ACDM01000075.1| GENE 46 48541 - 49272 455 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 242 7 246 255 179 40 5e-44 MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDE KSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR QRS >gi|223713523|gb|ACDM01000075.1| GENE 47 49399 - 49800 370 133 aa, chain + ## HITS:1 COG:ECs5157 KEGG:ns NR:ns ## COG: ECs5157 COG3789 # Protein_GI_number: 15834411 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 133 1 133 133 230 100.0 5e-61 MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN ALDLAEITEEYSH >gi|223713523|gb|ACDM01000075.1| GENE 48 49819 - 50517 908 232 aa, chain + ## HITS:1 COG:yjfJ KEGG:ns NR:ns ## COG: yjfJ COG1842 # Protein_GI_number: 16132004 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Escherichia coli K12 # 1 232 1 232 232 291 100.0 7e-79 MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDKAGKSRVDLLARVKLSH DKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLENLITAEEQVLSNLEVSRDG VEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTVGASSSVSTAAESLKRLQTRQ AERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSSAQDVLARLQRQQGE >gi|223713523|gb|ACDM01000075.1| GENE 49 50568 - 51227 705 219 aa, chain + ## HITS:1 COG:no KEGG:JW4141 NR:ns ## KEGG: JW4141 # Name: yjfK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 219 1 219 219 421 100.0 1e-116 MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDELLIALPGEEFTVAAVSH IDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYEESYGISKESHWREAINAK AMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNHAKWEVHNFTMGYQRQVTEDT YEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHIIG >gi|223713523|gb|ACDM01000075.1| GENE 50 51245 - 51643 362 132 aa, chain + ## HITS:1 COG:ECs5160 KEGG:ns NR:ns ## COG: ECs5160 COG3766 # Protein_GI_number: 15834414 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 132 1 132 132 220 100.0 6e-58 MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVI PLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAAL AGGIFNAACMTW >gi|223713523|gb|ACDM01000075.1| GENE 51 51653 - 52291 350 212 aa, chain + ## HITS:1 COG:yjfM KEGG:ns NR:ns ## COG: yjfM COG5463 # Protein_GI_number: 16132007 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli K12 # 1 212 1 212 212 387 99.0 1e-108 MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLALMGGAAFFVLKGCSDSS DVDNDGDGTFYATVQDCIDDGNNADICARGWNNAKTAFYADVPKNMTQQNCQSKYENCYY DNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASRPVWRSTSGDYSWRSGSGKKE SYSSGGFTTKKASTVSRGGYGRSSSARGHWGG >gi|223713523|gb|ACDM01000075.1| GENE 52 52294 - 53457 1164 387 aa, chain + ## HITS:1 COG:ECs5162 KEGG:ns NR:ns ## COG: ECs5162 COG0754 # Protein_GI_number: 15834416 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 1 387 1 387 387 798 99.0 0 MLRHNVPVRRDLDQIAADNGFDFHIIDNEIYWDESRAYRFTLRQIEEQIEKPTAELHQMC LEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNAD TPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLISRFSELYSREPFYFCCCQDT DEDRSTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD DNGPLLRKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYV RKPLYSREGGNVTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDE ACGMGIREDNTLITKDTSRFVPHYIAG >gi|223713523|gb|ACDM01000075.1| GENE 53 53541 - 55166 1239 541 aa, chain + ## HITS:1 COG:aidB KEGG:ns NR:ns ## COG: aidB COG1960 # Protein_GI_number: 16132009 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli K12 # 1 541 6 546 546 1107 99.0 0 MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGR LANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAAR FMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLI GMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFV PRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGQEGEGIRLILKMGGMTRF DCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLAR AWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPV NSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEE LGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC V >gi|223713523|gb|ACDM01000075.1| GENE 54 55283 - 55570 247 95 aa, chain - ## HITS:1 COG:no KEGG:SSON_4370 NR:ns ## KEGG: SSON_4370 # Name: yjfN # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 95 6 100 100 172 100.0 2e-42 MELTMKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERI VALKADEQGASWYRIITMYEDQQPDNWRVQAILYA >gi|223713523|gb|ACDM01000075.1| GENE 55 55707 - 56036 221 109 aa, chain - ## HITS:1 COG:no KEGG:APECO1_2203 NR:ns ## KEGG: APECO1_2203 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 109 34 142 142 201 99.0 8e-51 MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVS TMVRGSPDDALAEIKAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK >gi|223713523|gb|ACDM01000075.1| GENE 56 56218 - 56967 510 249 aa, chain + ## HITS:1 COG:yjfP KEGG:ns NR:ns ## COG: yjfP COG1073 # Protein_GI_number: 16132012 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1 249 1 249 249 495 98.0 1e-140 MIEIESRELADIPVLHAYPVGQKDTPLPCAIFYHGFTSSSLVYSYFAVALAQAGLRVIMP DAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEEKWLLDDRLAVGGASMGAMT ALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNH LEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDA AVTFFRQHL >gi|223713523|gb|ACDM01000075.1| GENE 57 56964 - 57719 855 251 aa, chain - ## HITS:1 COG:ECs5167 KEGG:ns NR:ns ## COG: ECs5167 COG1349 # Protein_GI_number: 15834421 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 251 1 251 251 482 100.0 1e-136 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAIT QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGL YKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ LEAQGVSILRV >gi|223713523|gb|ACDM01000075.1| GENE 58 57827 - 58891 1277 354 aa, chain - ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 354 3 356 356 752 99.0 0 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCV DFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQVDAVLATHDHN DHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHAL DAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEH QIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWE MKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDDCFTIEPDLPFKSFL >gi|223713523|gb|ACDM01000075.1| GENE 59 59246 - 60643 1767 465 aa, chain + ## HITS:1 COG:sgaT KEGG:ns NR:ns ## COG: sgaT COG3037 # Protein_GI_number: 16132015 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 465 20 484 484 806 99.0 0 MEILYNIFTVFFNQVMTNAPLLLGIVTCLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSG ILTSTFKPVVAKMSEVYGINGAISDTYASMMATIDRMGDAYSWVGYAVLLALALNICYVL LRRITGIRTIMLTGHIMFQQAGLIAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKP TQEVTDGCGFSIGHQQQFASWIAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVM TIFFGAILLSFGIDTVQAMAGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNG ISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPM FFSNATIGVFANHFGGWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPM MQGFFSIGIAFMAVIIVIALAYMFFAGRALRAEEDAEKQLAEQSA >gi|223713523|gb|ACDM01000075.1| GENE 60 60659 - 60964 336 101 aa, chain + ## HITS:1 COG:ECs5170 KEGG:ns NR:ns ## COG: ECs5170 COG3414 # Protein_GI_number: 15834424 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 1 101 1 101 101 196 100.0 6e-51 MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHI AGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKEHFPQDVK >gi|223713523|gb|ACDM01000075.1| GENE 61 60974 - 61438 617 154 aa, chain + ## HITS:1 COG:ECs5171 KEGG:ns NR:ns ## COG: ECs5171 COG1762 # Protein_GI_number: 15834425 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1 154 1 154 154 287 95.0 6e-78 MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYYQAILDAVEQHGPYFVL APGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDILITMAAIDANTHQEVGIMQ IVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA >gi|223713523|gb|ACDM01000075.1| GENE 62 61452 - 62102 920 216 aa, chain + ## HITS:1 COG:ECs5172 KEGG:ns NR:ns ## COG: ECs5172 COG0269 # Protein_GI_number: 15834426 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 420 100.0 1e-117 MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL ADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWE QAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLF KGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG >gi|223713523|gb|ACDM01000075.1| GENE 63 62112 - 62966 1072 284 aa, chain + ## HITS:1 COG:ECs5173 KEGG:ns NR:ns ## COG: ECs5173 COG3623 # Protein_GI_number: 15834427 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli O157:H7 # 1 284 1 284 284 582 100.0 1e-166 MLSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLAL VNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD VYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWF QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK QSGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA >gi|223713523|gb|ACDM01000075.1| GENE 64 62966 - 63652 822 228 aa, chain + ## HITS:1 COG:sgaE KEGG:ns NR:ns ## COG: sgaE COG0235 # Protein_GI_number: 16132020 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 228 1 228 228 464 99.0 1e-131 MQKLKQQVFEANMELPRYGLVTFTWGNVSAIDRERGLVVIKPSGVAYETMKAADMVVVDM SGKVVEGEYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAGLAIPALGTTHADYF FGDIPCTRGLSEEEVQGEYELNTGKVIIETLGNAEPLHTPGIVVYQHGPFAWGKDAHDAV HNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRKHGPNAYYGQK >gi|223713523|gb|ACDM01000075.1| GENE 65 63781 - 64056 313 91 aa, chain - ## HITS:1 COG:no KEGG:LF82_3468 NR:ns ## KEGG: LF82_3468 # Name: yjfY # Def: UPF0379 protein YjfY # Organism: E.coli_LF82 # Pathway: not_defined # 1 91 1 91 91 141 100.0 6e-33 MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEE TDAQGATYYHVILMREPGSNGNMHASADIYR >gi|223713523|gb|ACDM01000075.1| GENE 66 64384 - 64779 681 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|188495956|ref|ZP_03003226.1| ribosomal protein S6 [Escherichia coli 53638] # 1 131 1 131 131 266 100 3e-70 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYV LMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANET ADDADAGDSEE >gi|223713523|gb|ACDM01000075.1| GENE 67 65105 - 65332 385 75 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18 [Escherichia coli O157:H7 str. Sakai] # 1 75 1 75 75 152 100 6e-36 MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIK RARYLSLLPYTDRHQ >gi|223713523|gb|ACDM01000075.1| GENE 68 65374 - 65823 720 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804792|ref|NP_290833.1| 50S ribosomal protein L9 [Escherichia coli O157:H7 EDL933] # 1 149 1 149 149 281 100 9e-75 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG VLRTTGEHEVSFQVHSEVFAKVIVNVVAE >gi|223713523|gb|ACDM01000075.1| GENE 69 65935 - 66906 679 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149199369|ref|ZP_01876406.1| Ribosomal protein L22 [Lentisphaera araneosa HTCC2155] # 24 316 48 339 346 266 43 5e-70 MKIKVSAGIIGAVLMLSASQSWAVTLKLSHNQDKSHPVHKAMEFFAKKSKEYSNGDITIR IYPNGTLGTQRETMELIRSGAIPLVKTNAAEMEAFENSYKLFSLPYLFRDRDHYYQVMQG DIGRKILDSTKSKGYFGLTFYDGGARSFYGNKPVLKPDDLKGMKVRVQPSPGAVEMIKVM GGNPTPLDYGELYTALQQGVVDMAENSVMALTTMRHGEVAKSFSLDEHTMVPDVVLMSNA AFDKLSQENQAVILKAAKESMSYMKDLWSEEEKQEFAKLDKMGVKVYQVDKAPFIEKVQP MYANFAKDNPALAPMLADIQAAK >gi|223713523|gb|ACDM01000075.1| GENE 70 66959 - 68260 1260 433 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 5 432 4 430 431 489 55 1e-137 MDYWLPIIVLFGAFFFMLALGVPIVYAIGLSTLASISTQLDFNSALSVVSQKLASGLDSF TLLAIPFFILSGNIMNHGGIARRLINFARILGGRLPGSLAHCNILANMLFGAISGSAVAS AAAMGGVMHPQQVKEGYDPAFSTAVNVASAPTGLLIPPSNTLIVYSLVSGGTSIAALFLA GYVPGILLGLALMVIAGIIAVRRGYPKPERPTLRQAGVAIWMAIPSIFLIILIMGGVLSG IFTPTEASAIAVIYTLFLALVLYREISVKDLPKIFLESVITTAIVLLLIGSSMGMSWAMS NADVPFLILDLLNTISDNPIIILLIINIILLIIGTFMDMTPAVLIFTPIFLPVVTELGMD PIHFGIVMVLNMCIGICTPPVGSVLFVGCSVSKLPINKIIKPMLPFYAVMVLVLAMVTYI PQISMALPRALGY >gi|223713523|gb|ACDM01000075.1| GENE 71 68303 - 68779 268 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1 148 1 148 164 107 37 2e-22 MRNIIRSINALLAALNITILAIIVACVTWQVAARFIFTSPSIFTDELSRLLFICLGLFGG AYTAGQNRHLAIDLLPMMLKGKARRHLFLCIQIIVIIFATIIMVYGGGLLTMDTFDSGQT SPALGWQMGYIYMSIPISGVLIIIYTIDMVLTELKQPL >gi|223713523|gb|ACDM01000075.1| GENE 72 68800 - 70881 1624 693 aa, chain - ## HITS:1 COG:TM0427 KEGG:ns NR:ns ## COG: TM0427 COG1053 # Protein_GI_number: 15643193 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Thermotoga maritima # 29 689 5 664 664 357 35.0 4e-98 MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVDYPLWQTDALVVGSGAAGLRAAVEL KRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFTKLAEALASGGAMDHDTAY VEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGRATSCGPRTSRLMVKVLLEEV QRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHRAHNPWGLAIVTAPNVVLATGGP GELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFGIGTPRSTFPWNLSGTYVQVIPYIY SVDAEGNEYNFLADYYRTTQELASNIFRKGYQWPFHATRVMDFGSSLLDMAVAQEQQSGR QVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYLENNDALAPSPIERLQRMNPLSISLYKMH GYDLTTQPLQFAMNNQHMNGGIEVDIWGQTSLPGCFAVGEVAGTHGVTRPGGAALNAGQV FAVRLARFIGCTQKRNIDGDIAQLVAPTLASIREIITQAHDNGTGMPLSVVREKIQARMS DHAGFICHADKVRRATRDALLLSEFVQRHGLAIKHVGEVAELFMWRHMALTSAAVLTQLT HYIDAGGGSRGARIILDRDGNSIPQTRNGFCDAWRFRSERTEDKKDKLLIHYCNGIFHVR ETPVREFPIIRGIWFEKNWPGFLNGTIYQPQDE >gi|223713523|gb|ACDM01000075.1| GENE 73 70878 - 72419 1696 513 aa, chain - ## HITS:1 COG:BH3898 KEGG:ns NR:ns ## COG: BH3898 COG4670 # Protein_GI_number: 15616460 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Bacillus halodurans # 3 507 4 507 525 416 46.0 1e-116 MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI GDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGAG RPGLFTHVGLGSFVDPRNGGGKSNECTTDELVELIEIDGETKLRYRPFKVDYAILRGTYA DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGG GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDITP DGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA >gi|223713523|gb|ACDM01000075.1| GENE 74 72429 - 73205 780 258 aa, chain - ## HITS:1 COG:AF2273_2 KEGG:ns NR:ns ## COG: AF2273_2 COG1024 # Protein_GI_number: 11499854 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Archaeoglobus fulgidus # 16 255 17 259 262 162 34.0 5e-40 MSDQPVLFSRAAASCRLTLNREDKCHAINEEMIESLDHYLNEIENDTTLRLVELTATGDK FFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNLPQLTVANLNGHTIGGGIELALCC DIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGRQMLMLGKRLTAQEAQAANLI DEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILALENKHADYPHQLLAGLMSATQDC QQATRAFAEKSSVSFHNQ >gi|223713523|gb|ACDM01000075.1| GENE 75 73215 - 74057 730 280 aa, chain - ## HITS:1 COG:SMc04130 KEGG:ns NR:ns ## COG: SMc04130 COG1082 # Protein_GI_number: 15963875 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Sinorhizobium meliloti # 11 280 6 274 274 271 50.0 7e-73 MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRRELQGEDLQQIAHQLAA SNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAACYMQVVGGLPTGTKDLYE AREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLCTLRQALDWCDELDPDGEFGL GVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPTTDLVNDRGMPGDGVINIPSIRR LVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRIAHYC >gi|223713523|gb|ACDM01000075.1| GENE 76 74067 - 74858 869 263 aa, chain - ## HITS:1 COG:mlr3057 KEGG:ns NR:ns ## COG: mlr3057 COG1028 # Protein_GI_number: 13472685 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mesorhizobium loti # 4 263 2 253 253 206 43.0 3e-53 MKSTRPVAVITGAARGIGKGCALELARGGFNLLINDLPDADSVEKLHITQQECIAEGVEV ICFPADVGDLSLHEEMLDAAQNLWGRLDCLLNNAGISVKKRGDLLDLEPDSFDQNIAINT RAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIMLAMNRGEYTIAKTAVSAAARL FAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAKGLVPWGRWGYPADIASTVRAMA EGKLIYTCGQAVAIDGGLSMPRF >gi|223713523|gb|ACDM01000075.1| GENE 77 75071 - 75718 543 215 aa, chain + ## HITS:1 COG:ytfA KEGG:ns NR:ns ## COG: ytfA COG1309 # Protein_GI_number: 16132027 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 108 215 1 108 108 210 99.0 2e-54 MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSKQTVYHHFGNKENLFIE VLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANPWFLKIVHSENQSKGVHYA KSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVY HISMVSPQALEARRKVIKETILSWLLVDPSSTAHE >gi|223713523|gb|ACDM01000075.1| GENE 78 75702 - 76340 495 212 aa, chain - ## HITS:1 COG:ytfB KEGG:ns NR:ns ## COG: ytfB COG3061 # Protein_GI_number: 16132028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell envelope opacity-associated protein A # Organism: Escherichia coli K12 # 1 212 13 224 224 363 99.0 1e-100 MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIILVVGFLLPSDDTPNAPVVT REAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQP DSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQN ASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR >gi|223713523|gb|ACDM01000075.1| GENE 79 76559 - 77179 940 206 aa, chain + ## HITS:1 COG:ECs5185 KEGG:ns NR:ns ## COG: ECs5185 COG0545 # Protein_GI_number: 15834439 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1 206 54 259 259 395 99.0 1e-110 MTTPTFDTIEAQASYGIGLQVGQQLSESGLQGLLPEALVAGIADALEGKHPAVPVDVVHR ALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTESGLQFRVINQGEGAIPART DRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQELA YGERGAGASIPPFSTLVFEVELLEIL >gi|223713523|gb|ACDM01000075.1| GENE 80 77488 - 78900 1462 470 aa, chain + ## HITS:1 COG:ECs5186 KEGG:ns NR:ns ## COG: ECs5186 COG1113 # Protein_GI_number: 15834440 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1 470 1 470 470 851 100.0 0 MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVY MIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVV AITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGL VMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVIN FVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVV MLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCW VCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK >gi|223713523|gb|ACDM01000075.1| GENE 81 78945 - 79607 893 220 aa, chain - ## HITS:1 COG:ytfE KEGG:ns NR:ns ## COG: ytfE COG2846 # Protein_GI_number: 16132031 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Regulator of cell morphogenesis and NO signaling # Organism: Escherichia coli K12 # 1 220 1 220 220 424 100.0 1e-119 MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAE QPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLT MLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPP PEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE >gi|223713523|gb|ACDM01000075.1| GENE 82 79715 - 80680 896 321 aa, chain - ## HITS:1 COG:ECs5188 KEGG:ns NR:ns ## COG: ECs5188 COG0697 # Protein_GI_number: 15834442 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 321 4 324 324 556 98.0 1e-158 MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLA RRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKL AWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARW LRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNIQTPDFSLPFGPRPLVFISLMVAI AVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGLLYTFLIRQQMPPLMTLSGIALLVV GVVIAVRAKPEKPLTESVSES >gi|223713523|gb|ACDM01000075.1| GENE 83 80789 - 81649 838 286 aa, chain - ## HITS:1 COG:ECs5190 KEGG:ns NR:ns ## COG: ECs5190 COG0702 # Protein_GI_number: 15834443 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 285 1 285 286 469 98.0 1e-132 MIAITGATGQLGHYVIKSLMKTVPASQIVAIVRNPAKAQALTAQGITVRQADYGDEAALT SALQGVEKLLLISSSEVGQRAPQHRNVINAAKTAGVKFIAYTSLLHADKSPLGLADEHIE TEKMLADSGIVYTLLRNGWYTENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAAR VISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSETDFAAALKSVGLPDGL ADMLADSDVGASKGGLFDDSKTLSKLIGRPTTTLAESVSHLFNVNK >gi|223713523|gb|ACDM01000075.1| GENE 84 81648 - 82118 456 156 aa, chain + ## HITS:1 COG:ytfH KEGG:ns NR:ns ## COG: ytfH COG1733 # Protein_GI_number: 16132034 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 156 1 156 156 305 100.0 2e-83 MGSLHRFVLCLNTLTPKLTFSKYVQKGKYEMSQVSLSQQLKEGNLFAEQCPSREVLKHVT SRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEY SLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA >gi|223713523|gb|ACDM01000075.1| GENE 85 82241 - 84184 2052 647 aa, chain - ## HITS:1 COG:cpdB KEGG:ns NR:ns ## COG: cpdB COG0737 # Protein_GI_number: 16132035 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Escherichia coli K12 # 1 647 1 647 647 1266 99.0 0 MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKDTATEKFGLVRTASLIN DARNEVKNSVLVDNGDLIQGSPLADYISAKGLKAGDVHPVYKALNTLDYTVGTLGNHEFN YGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDTEVVDKDGKKQTLKIGYIGVV PPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGADVVVVLAHSGLSADPYKVMAENS VYYLSEIPGVNAIMFGHAHAVFPGKDFADIEGADIAKGTLNGVPAVMPGMWGDHLGVVDL QLSNNSGKWQVTQAKAEARPIYDIANKKSLAAEDSKLVETLKADHDATRQFVSKPIGKSA DNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQGDPDLAKLPVLSAAAPFKVGGRKNDPAS YVEVEKGQLTFRNAADLYLYPNTLIVVKASGKEVKEWLECSAGQFNQIDPDNTKPQSLIN WDGFRTYNFDVIDGVNYQIDVTQPARYDGECQMVNANAERIKNLTFNGKPIDPNAMFLVA TNNYRAYGGKFAGTGDSHIAFASPDENRSVLAAWIADESKRAGEIHPAADNNWRLAPIAG DKKLDIRFETSPSDKAAAFIKEKGQYPMNKVATDDIGFAIYQVDLSK >gi|223713523|gb|ACDM01000075.1| GENE 86 84374 - 85114 736 246 aa, chain + ## HITS:1 COG:cysQ KEGG:ns NR:ns ## COG: cysQ COG1218 # Protein_GI_number: 16132036 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Escherichia coli K12 # 1 246 1 246 246 475 99.0 1e-134 MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAAHTVIMDGLRTLTPDIP VLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIDHGKPILGVVYAPVM NIMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHADAELKEYLQQLGEHQTTSIGS SLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGAHVHDWQGKPLDYTPRESFLNPG FRVSIY >gi|223713523|gb|ACDM01000075.1| GENE 87 85104 - 85661 669 185 aa, chain - ## HITS:1 COG:ECs5194 KEGG:ns NR:ns ## COG: ECs5194 COG3054 # Protein_GI_number: 15834448 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 183 1 183 184 353 98.0 1e-97 MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN KKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQWAKDGALTQEEVQQVMDLLH KLINK >gi|223713523|gb|ACDM01000075.1| GENE 88 85986 - 86192 271 68 aa, chain + ## HITS:1 COG:no KEGG:G2583_5047 NR:ns ## KEGG: G2583_5047 # Name: ytfK # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 68 14 81 81 119 100.0 4e-26 MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQV MRLQTEMA >gi|223713523|gb|ACDM01000075.1| GENE 89 86254 - 87597 1536 447 aa, chain - ## HITS:1 COG:ECs5196 KEGG:ns NR:ns ## COG: ECs5196 COG1253 # Protein_GI_number: 15834450 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 876 100.0 0 MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTV VQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLT PKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDI YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAE HPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALE SFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTP IDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQL LVTRIDSKATALSPKLPDAKDKEESVA >gi|223713523|gb|ACDM01000075.1| GENE 90 87920 - 88558 676 212 aa, chain - ## HITS:1 COG:msrA KEGG:ns NR:ns ## COG: msrA COG0225 # Protein_GI_number: 16132041 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Escherichia coli K12 # 1 212 1 212 212 405 100.0 1e-113 MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLF WQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHD PAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPF YYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA >gi|223713523|gb|ACDM01000075.1| GENE 91 88633 - 88794 65 53 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_4698 NR:ns ## KEGG: EcSMS35_4698 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 12 53 1 42 42 84 97.0 8e-16 MNRSKVKHKKYLGFSLLFNPYYWIFVKPFNGVPGAGKKDIQEKMCAISDSYAV >gi|223713523|gb|ACDM01000075.1| GENE 92 88764 - 90497 1642 577 aa, chain + ## HITS:1 COG:ECs5198 KEGG:ns NR:ns ## COG: ECs5198 COG0729 # Protein_GI_number: 15834452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Escherichia coli O157:H7 # 1 577 1 577 577 1169 99.0 0 MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRAR VDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTD KDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWD IDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTT STSISAPEQILDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSG WQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSRGGLMPTWGDSQRYSIDYSNTAW GSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGV GVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL >gi|223713523|gb|ACDM01000075.1| GENE 93 90494 - 94273 4084 1259 aa, chain + ## HITS:1 COG:ECs5199 KEGG:ns NR:ns ## COG: ECs5199 COG2911 # Protein_GI_number: 15834453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 1259 1 1259 1259 2434 99.0 0 MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDVGKVTGGWRDLTL SDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEE DSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLI ALPKVAEVAQEEVVEPKIENPQPEEKPLGETLKDLFSRPVLPEMTDVHLPLNLNIEEFKG EQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVDITLN STLNVEPLKGEKVKLKVGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPLNVEVNSKQ IYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGLEIPPATITLDAKGNEQQVNLDK LTVAALEGKTELKALLDWQQAISWRGELTLNGINTAKEIPEWPSKLNGLIKTRGSLYGGT WQMEVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLELGPNSAEVKGELGVKDLNL DATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSVAQVRVEGDI KSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFD RKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTID AGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNV QVTQTVNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGG NVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFD MQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPM VRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPK TASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQ DLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQ QAALSYLLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGD SSQVVVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF >gi|223713523|gb|ACDM01000075.1| GENE 94 94276 - 94617 230 113 aa, chain + ## HITS:1 COG:ECs5200 KEGG:ns NR:ns ## COG: ECs5200 COG2105 # Protein_GI_number: 15834454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 113 1 113 113 226 100.0 1e-59 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDN ATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK >gi|223713523|gb|ACDM01000075.1| GENE 95 94996 - 95526 717 176 aa, chain - ## HITS:1 COG:ECs5204 KEGG:ns NR:ns ## COG: ECs5204 COG0221 # Protein_GI_number: 15834458 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 346 98.0 1e-95 MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYIN HTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLIAVPHTKLSKEYDH IKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK >gi|223713523|gb|ACDM01000075.1| GENE 96 95836 - 96792 1133 318 aa, chain + ## HITS:1 COG:ECs5205 KEGG:ns NR:ns ## COG: ECs5205 COG1879 # Protein_GI_number: 15834459 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 318 1 318 318 571 99.0 1e-163 MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKS LYMTTVTADNILEGKLIGDWLIKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK DILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTL YLPDTAKEELEKKKNMGY >gi|223713523|gb|ACDM01000075.1| GENE 97 96932 - 98434 207 500 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 268 477 9 214 245 84 26 3e-15 MTTNQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYH ADRGTIWLEGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRK EMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQE VELLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKM MLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRT ETAEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENII LALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTR PQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIIMRDRKQ VAEIPLAELSVPAIMNAIAA >gi|223713523|gb|ACDM01000075.1| GENE 98 98448 - 99470 1088 340 aa, chain + ## HITS:1 COG:ECs5207 KEGG:ns NR:ns ## COG: ECs5207 COG1172 # Protein_GI_number: 15834461 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 340 2 341 341 495 99.0 1e-140 MPQSLPDTTPPKRRFRWPTGMPQLAALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILN RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILA GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPDLSWFGSGSLLFLPTP VIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAG IIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILL SGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT >gi|223713523|gb|ACDM01000075.1| GENE 99 99457 - 100452 1147 331 aa, chain + ## HITS:1 COG:yjfF KEGG:ns NR:ns ## COG: yjfF COG1172 # Protein_GI_number: 16132053 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 9 331 1 323 323 520 99.0 1e-147 MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG IDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL LFIFIALQRGLTVLWENRQSSPVTRVNIAQR >gi|223713523|gb|ACDM01000075.1| GENE 100 100485 - 101483 1113 332 aa, chain - ## HITS:1 COG:fbp KEGG:ns NR:ns ## COG: fbp COG0158 # Protein_GI_number: 16132054 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Escherichia coli K12 # 1 332 1 332 332 685 100.0 0 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV NVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTY DPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYI GSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKASDGKERILDI IPETLHQRRSFFVGNDHMVEDVERFIREFPDA >gi|223713523|gb|ACDM01000075.1| GENE 101 101659 - 103032 1714 457 aa, chain + ## HITS:1 COG:ZyjfG KEGG:ns NR:ns ## COG: ZyjfG COG0773 # Protein_GI_number: 15804823 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Escherichia coli O157:H7 EDL933 # 1 457 1 457 457 953 100.0 0 MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEKQGIELIQGYDASQLDP QPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGM ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQEL VGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPAD AANALGSFINARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP RSNTMKMGICKDDLAPSLGRADEVFLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMV VKTAQPGDHILVMSNGGFGGIHQKLLDGLAKKAEAAQ >gi|223713523|gb|ACDM01000075.1| GENE 102 103188 - 103739 769 183 aa, chain - ## HITS:1 COG:ECs5211 KEGG:ns NR:ns ## COG: ECs5211 COG3028 # Protein_GI_number: 15834465 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 183 1 183 183 271 100.0 7e-73 MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLD ADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKNRHNQQVVLFHKLEN LRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAE NEG >gi|223713523|gb|ACDM01000075.1| GENE 103 103834 - 105186 1396 450 aa, chain + ## HITS:1 COG:ECs5212 KEGG:ns NR:ns ## COG: ECs5212 COG0312 # Protein_GI_number: 15834466 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Escherichia coli O157:H7 # 1 450 1 450 450 885 100.0 0 MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEF NSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFD APDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQ GYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLS TMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKG LASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSF EQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWR NIVTVGNDIETRSNIQCGSVLLPEMKIAGQ >gi|223713523|gb|ACDM01000075.1| GENE 104 105369 - 105755 568 128 aa, chain + ## HITS:1 COG:STM4439 KEGG:ns NR:ns ## COG: STM4439 COG3783 # Protein_GI_number: 16767685 # Func_class: C Energy production and conversion # Function: Soluble cytochrome b562 # Organism: Salmonella typhimurium LT2 # 1 128 1 128 128 174 85.0 4e-44 MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDTLKVVEKADNAAQVKDALTKMRAAAL DAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTR NAYHQKYR >gi|223713523|gb|ACDM01000075.1| GENE 105 105800 - 106264 430 154 aa, chain - ## HITS:1 COG:ECs5214 KEGG:ns NR:ns ## COG: ECs5214 COG0602 # Protein_GI_number: 15834468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Escherichia coli O157:H7 # 1 154 1 154 154 319 98.0 1e-87 MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN DTRIKRQGISLSGGDPLHPQNVPDILKLVKRIRAECPDKDIWVWTGYKLDDLNAAQMQVV DLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR >gi|223713523|gb|ACDM01000075.1| GENE 106 106422 - 108560 2517 712 aa, chain - ## HITS:1 COG:nrdD KEGG:ns NR:ns ## COG: nrdD COG1328 # Protein_GI_number: 16132060 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Escherichia coli K12 # 1 712 1 712 712 1505 99.0 0 MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSEQMQGRNQVDINE IQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGLVEQTNASLLNENANK DSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIHYHDLDYSPFFPMFNCMLIDL KGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTASY NKHRKTAEEWSIPDAEGYANSRTIKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTS WESRLIQESILRNRIAGLGKNRKTAVFPKLVFAIRDGLNHKKGDPNYDIKQLALECASKR MYPDILNYDQVVKVTGSFKTPMGCRSFLGVWENENGEQIHDGRNNLGVISLNLPRIALEA KGDEATFWKLLDERLVLARKALMTRIARLEGVKARVAPILYMEGACGVRLNADDDVSEIF KNGRASISLGYIGIHETINALFGGEHVYDNEQLRAKGIAIVERLRQAVDQWKEETGYGFS LYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPL ANGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGF TCPKCGNHDASRVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG >gi|223713523|gb|ACDM01000075.1| GENE 107 108954 - 110609 1396 551 aa, chain - ## HITS:1 COG:ECs5216 KEGG:ns NR:ns ## COG: ECs5216 COG0366 # Protein_GI_number: 15834470 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 551 1 551 551 1131 99.0 0 MTNLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHKLGVDAIWLTPFYVSPQ VDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKE SPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRA ELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDV FTPRGLMTVGEMSSTSLEHCQRYAALAGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVAL KTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYI YQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWS NGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDL LPNSPVLWCYRREWKGQTLLVIANLSREIQPWQPGQMRGNWQLVMHNYEEASPQPCAMNL RPFEAVWWLQK >gi|223713523|gb|ACDM01000075.1| GENE 108 110659 - 112077 1577 472 aa, chain - ## HITS:1 COG:ECs5217_2 KEGG:ns NR:ns ## COG: ECs5217_2 COG1263 # Protein_GI_number: 15834471 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 92 472 1 381 381 690 100.0 0 MSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANARPKEIEQLPMVKGCFTNA GQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMKWHEQLISHFAEIFFPLLPA LISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFLWLIGEAIFFYLPVGICWSAVK KMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGMFSIAKVGYQAQVIPALLAGLA LGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVRHLMTGSF APIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQGSAVIGIII SSRKHNEREISVPAAISAWLGVTEPAMYGINLKYRFPMLCAMIGSGLAGLLCGLNGVMAN GIGVGGLPGILSIQPSYWQVFALAMAIAIIIPIVLTSFIYQRKYRLGTLDIV >gi|223713523|gb|ACDM01000075.1| GENE 109 112199 - 113146 808 315 aa, chain - ## HITS:1 COG:treR KEGG:ns NR:ns ## COG: treR COG1609 # Protein_GI_number: 16132063 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 315 1 315 315 619 99.0 1e-177 MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSPSRSARAMRGQ SDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGILKRRNID GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHRNISY LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCAT DTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVT GRSEPQQIIIPATLS >gi|223713523|gb|ACDM01000075.1| GENE 110 113525 - 116221 2822 898 aa, chain + ## HITS:1 COG:ECs5219 KEGG:ns NR:ns ## COG: ECs5219 COG0474 # Protein_GI_number: 15834473 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli O157:H7 # 1 898 1 898 898 1816 100.0 0 MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLKMAVMPEEELWKTFDTH PEGLNQAEVESAREQHGENKLPAQQPSPWWVHLWVCYRNPFNILLTILGAISYATEDLFA AGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLV PGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKAATTRQPEHSNPLECDTLC FMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQESEPNAFQQGISRVSMLLIRFMLVMA PVVLLINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKHLDA IQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTA VLEGTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQ VRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGY IAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLS DDELANLAQRTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDG AVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFL PFLPMLPLHLLIQNLLYDVSQVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFD ILTFCLMWWVFHANTPETQTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIM TVIVMIVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ >gi|223713523|gb|ACDM01000075.1| GENE 111 116427 - 116813 551 128 aa, chain - ## HITS:1 COG:ECs5220 KEGG:ns NR:ns ## COG: ECs5220 COG0251 # Protein_GI_number: 15834474 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli O157:H7 # 1 128 14 141 141 228 100.0 2e-60 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAI VEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIE IEAIAVRR >gi|223713523|gb|ACDM01000075.1| GENE 112 116886 - 117347 526 153 aa, chain - ## HITS:1 COG:ECs5221 KEGG:ns NR:ns ## COG: ECs5221 COG1781 # Protein_GI_number: 15834475 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Escherichia coli O157:H7 # 1 153 1 153 153 304 100.0 5e-83 MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIK IENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEP VSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN >gi|223713523|gb|ACDM01000075.1| GENE 113 117360 - 118295 1006 311 aa, chain - ## HITS:1 COG:ECs5222 KEGG:ns NR:ns ## COG: ECs5222 COG0540 # Protein_GI_number: 15834476 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Escherichia coli O157:H7 # 1 311 1 311 311 613 100.0 1e-176 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS GNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKF DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE YANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQAL LALVLNRDLVL >gi|223713523|gb|ACDM01000075.1| GENE 114 118714 - 119109 245 131 aa, chain - ## HITS:1 COG:ECs5225 KEGG:ns NR:ns ## COG: ECs5225 COG0251 # Protein_GI_number: 15834479 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli O157:H7 # 1 131 1 131 131 263 99.0 5e-71 MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNL HATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDF EIKVIARIPEL >gi|223713523|gb|ACDM01000075.1| GENE 115 119240 - 119953 274 237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 234 4 239 242 110 35 5e-23 MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDS ADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQ MPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPID TDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA >gi|223713523|gb|ACDM01000075.1| GENE 116 120024 - 120617 310 197 aa, chain + ## HITS:1 COG:STM1674 KEGG:ns NR:ns ## COG: STM1674 COG1309 # Protein_GI_number: 16765017 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 2 197 1 196 196 220 54.0 2e-57 MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSK VGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIH SHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQL CATAALAGEAIKTILKE >gi|223713523|gb|ACDM01000075.1| GENE 117 120762 - 121214 582 150 aa, chain + ## HITS:1 COG:ECs5229 KEGG:ns NR:ns ## COG: ECs5229 COG2731 # Protein_GI_number: 15834483 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli O157:H7 # 1 150 4 153 153 305 100.0 2e-83 MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARR AEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFV VFYPGEVHKPLCAVGAPAQVRKAVVKMLMA >gi|223713523|gb|ACDM01000075.1| GENE 118 121337 - 122848 718 503 aa, chain + ## HITS:1 COG:no KEGG:ECO26_5422 NR:ns ## KEGG: ECO26_5422 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 503 1 503 503 971 100.0 0 MAKISDLNCYQHMASADNVKPKNEVLNTWCVGMNDFARNAEGQDSRRNILSPGAFLEFLA KIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMNFVMNNPEGERADSSKVIIE ISLSTTTTMGTRQGHTAIIFPQSDFLSFRYEGKSFERKDDSSLHLITNKVLACYQREANK NMALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGIL EEINDLKALHDTRIASGTEGNDEINNIKINLSNILIDSLDDAKVNLEKVIDSMLKTFLKL PYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKN SPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFM KQPDFAKWYFYQLIKKYEGEQLYLNELGYVYGNEEKTNEIVKKLPGYVIKIFEEKMGNEL KIRTRMMKILRNGKINIYKYMNI >gi|223713523|gb|ACDM01000075.1| GENE 119 123017 - 124030 1000 337 aa, chain - ## HITS:1 COG:ECs5231 KEGG:ns NR:ns ## COG: ECs5231 COG0078 # Protein_GI_number: 15834485 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 671 99.0 0 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR CSFEVAAYDQGAHVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA KEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME VTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN >gi|223713523|gb|ACDM01000075.1| GENE 120 124192 - 124608 722 138 aa, chain + ## HITS:1 COG:ECs5232 KEGG:ns NR:ns ## COG: ECs5232 COG3076 # Protein_GI_number: 15834486 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 138 1 138 138 187 100.0 5e-48 MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEV TDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNG EDGDDEDFVDEDDDGVRH >gi|223713523|gb|ACDM01000075.1| GENE 121 124654 - 125157 570 167 aa, chain - ## HITS:1 COG:STM4473 KEGG:ns NR:ns ## COG: STM4473 COG0454 # Protein_GI_number: 16767718 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 1 167 1 167 167 261 80.0 3e-70 MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGH AYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMG FKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL >gi|223713523|gb|ACDM01000075.1| GENE 122 125350 - 125781 262 143 aa, chain + ## HITS:1 COG:ECs5234 KEGG:ns NR:ns ## COG: ECs5234 COG4269 # Protein_GI_number: 15834488 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 143 1 143 398 246 98.0 1e-65 MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEV NGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLR YQALMTSLNGVRFSFNCSMKGFW >gi|223713523|gb|ACDM01000075.1| GENE 123 125806 - 126546 305 246 aa, chain + ## HITS:1 COG:ECs5234 KEGG:ns NR:ns ## COG: ECs5234 COG4269 # Protein_GI_number: 15834488 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 246 153 398 398 395 99.0 1e-110 MAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSF GIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQF MEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMC ALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIM PSLPFL >gi|223713523|gb|ACDM01000075.1| GENE 124 126600 - 129455 3483 951 aa, chain - ## HITS:1 COG:ECs5235 KEGG:ns NR:ns ## COG: ECs5235 COG0525 # Protein_GI_number: 15834489 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 951 1 951 951 1939 100.0 0 MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMD TMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAE SGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLR TAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDP RYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINI LTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPH DLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDI QDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSA LWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHT VYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEK QFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQD CGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELT KPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQP FPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNEN RGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIE GEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL >gi|223713523|gb|ACDM01000075.1| GENE 125 129455 - 129898 417 147 aa, chain - ## HITS:1 COG:ECs5236 KEGG:ns NR:ns ## COG: ECs5236 COG2927 # Protein_GI_number: 15834490 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, chi subunit # Organism: Escherichia coli O157:H7 # 1 147 1 147 147 289 99.0 1e-78 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP AESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTCFADFATAFTEVVDFVPYE DSLKQLARERYKAYRVAGFNLNTATWK >gi|223713523|gb|ACDM01000075.1| GENE 126 130252 - 131763 1681 503 aa, chain - ## HITS:1 COG:ECs5237 KEGG:ns NR:ns ## COG: ECs5237 COG0260 # Protein_GI_number: 15834491 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Escherichia coli O157:H7 # 1 503 1 503 503 1002 100.0 0 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAI AAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVG QGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAV YGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLC DVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRL PLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKG ATGRPVALLAQFLLNRAGFNGEE >gi|223713523|gb|ACDM01000075.1| GENE 127 132051 - 133130 962 359 aa, chain + ## HITS:1 COG:ECs5238 KEGG:ns NR:ns ## COG: ECs5238 COG0795 # Protein_GI_number: 15834492 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1 359 8 366 366 619 99.0 1e-177 MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV VVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTD QMDMCTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYL LFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV >gi|223713523|gb|ACDM01000075.1| GENE 128 133130 - 134212 1440 360 aa, chain + ## HITS:1 COG:ECs5239 KEGG:ns NR:ns ## COG: ECs5239 COG0795 # Protein_GI_number: 15834493 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1 360 2 361 361 659 100.0 0 MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSV PKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAI GEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAF NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG VVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL RSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS >gi|223713523|gb|ACDM01000075.1| GENE 129 134331 - 135833 1403 500 aa, chain - ## HITS:1 COG:yjgR KEGG:ns NR:ns ## COG: yjgR COG0433 # Protein_GI_number: 16132085 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1 500 1 500 500 944 98.0 0 MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVK GDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLL ARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASV GAIQRGLLSLEQQGAAHFFGEPMLDIKDLMRTDANGKGVINILSAEKLYQMPKLYAASLL WMISELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFV SQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGE ALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEM LQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAAR QVTNQIVRGMLGSLLGGRRR >gi|223713523|gb|ACDM01000075.1| GENE 130 135963 - 136982 1204 339 aa, chain - ## HITS:1 COG:yjgB KEGG:ns NR:ns ## COG: yjgB COG1064 # Protein_GI_number: 16132091 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Escherichia coli K12 # 1 339 15 353 353 674 98.0 0 MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLV AGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDTCISGNQINCEQGAVPTIMN RGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGL GHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGTDKVVNSRDPQALKALSGQFDLIINTVN VSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFA ARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF >gi|223713523|gb|ACDM01000075.1| GENE 131 137353 - 139263 621 636 aa, chain + ## HITS:1 COG:ECs5242_2 KEGG:ns NR:ns ## COG: ECs5242_2 COG0582 # Protein_GI_number: 15834496 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 432 636 1 205 205 384 90.0 1e-106 MSQRYKLYRRTSGIYVVRISIPQRFRRYAGQCEIHTSTGTHDLHEAKQKSALLLAVWYQT LQEYEQLDYRTLSDCAPLLAGEGMISLSNFAQSVELPVAQLIQAVMNRNLPVFWLATGQA GFYVAALSEAELDPLDGSYVLNYGEEKGIEGVAKGYLQLTAQPAHLRNIISDGYSEASVF KTAGSDAKGGWFFTSGWPVIKPDTLLINKVHAESLRLDWLAKTTPPVASVHPTVPLAAPA PTIDNEYVNRKYYTKNLSWLCSEYLKHRRKGKVSESAISDIRNYFSFMIEAMGDIQLEDF DRDFLRAYESKLRTIPANRNLVKAKYGVKTLDQLIAKAAECGDKLMTEESVRKYINGIYG AMKWAVADGKLLKSPCENFFPSDDKDERDQDHTDIFEPHEIKAIFSLPWFEAGTVERNAQ GRFHQYCPFNYWAPLLGLMTGARVNEIAQLLLSDVLADDGVYYLNLESDNESGKKLKNAN ARRKIPLHSKLISLGFIDYVNALKDAGYTRLFPELKPHKTKGYGRPVSAWFNESLLAGRL KLERNRSKSFHSFRHSVSTLLKEKGVSSELRAQLLGHVRGETETEVRYSKDLKPIHMIEV VEKIDFSLPDIAEFNIPDGLDAVRDALRRKRGKQTG >gi|223713523|gb|ACDM01000075.1| GENE 132 139396 - 139728 155 110 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C0287 NR:ns ## KEGG: UTI89_C0287 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 110 1 110 110 212 92.0 3e-54 MRTVEILQYTLRKGSGAAFHAIMQEISVPLHQRHGIDVVSFGNSLHDPDCYYLIRAFVSP KSMTTVLDAFYASDDWRSGPREDIIGNIEASIKTVINLPSESVEGLRVQS >gi|223713523|gb|ACDM01000075.1| GENE 133 141393 - 141953 405 186 aa, chain + ## HITS:1 COG:ECs5249 KEGG:ns NR:ns ## COG: ECs5249 COG1961 # Protein_GI_number: 15834503 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli O157:H7 # 1 186 3 188 191 277 83.0 1e-74 MATFGYGRVSTSQQDTENQRLELGQAGWQIDYWFADVVSGKVPAMQRKAFSEMLNKIRDG ETLVVAKLDRLGRDAIDVLQTVRALADRNIKVLVHQLGNTDLTSAAGKLLLSMLAAVAEM ERDLLIERTQAGLSRAKAEGKKLGRPPKIASEARREILEKKNSGLSISALARQYGVSRAT VAAITD >gi|223713523|gb|ACDM01000075.1| GENE 134 141967 - 142812 150 281 aa, chain + ## HITS:1 COG:no KEGG:GAU_0079 NR:ns ## KEGG: GAU_0079 # Name: not_defined # Def: hypothetical protein # Organism: G.aurantiaca # Pathway: not_defined # 1 280 1 277 277 310 54.0 3e-83 MAYTATVIPVMIASPGDVAEERQVIREMIHEWNDINSARSKVMLTPIGWETHTSPELGVR PQELINQRLLVDCDLLIGVFWTRLGSPTGNEASGTVEEIHRHLNAGKPAMIYFSSKPVAP ESLDREQYESLKLFKTECMQKGLIESFNDLSDFKEKVRRQLSIIISSSPYLSSLISTINN SPDANTSQSLPESNLSADALSLLKLACVDDSGTIYVIRHLGGTDIQAGNQSFGGSSAREV ARWEGALNELLSFDFVIERGAKGQMYYVTHKGWTFLESLNE >gi|223713523|gb|ACDM01000075.1| GENE 135 142873 - 143367 278 164 aa, chain - ## HITS:1 COG:no KEGG:Pecwa_3422 NR:ns ## KEGG: Pecwa_3422 # Name: not_defined # Def: hypothetical protein # Organism: P.wasabiae # Pathway: not_defined # 1 164 1 165 165 248 74.0 7e-65 MTGADFLLPIAAGAAISWASYSVVAHAVSKQHISTLRATVWGALGTLSLVLGVCAFSAVG AEHQTARKDIVCADDNPECYAKTHHNPVRECKKVMDEKAKFRHVWQESEAPVFNTYLWHD ENAKIIQAFGQQAKVVNSLGMLAPLQYFCVFNAKTGEVIAASFE >gi|223713523|gb|ACDM01000075.1| GENE 136 143608 - 144072 235 154 aa, chain + ## HITS:1 COG:ECs5252 KEGG:ns NR:ns ## COG: ECs5252 COG1396 # Protein_GI_number: 15834506 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 154 1 154 154 271 90.0 5e-73 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA LEYLRSMETAKWRRPNPSGNWGIVSAVRWDKLRK >gi|223713523|gb|ACDM01000075.1| GENE 137 145350 - 145934 193 194 aa, chain + ## HITS:1 COG:no KEGG:ECS88_4853 NR:ns ## KEGG: ECS88_4853 # Name: not_defined # Def: conserved hypothetical protein, putative phage-related protein # Organism: E.coli_S88 # Pathway: not_defined # 1 194 81 274 274 388 99.0 1e-107 MLTAIRDYIYGEAWYLVYDLIEFIIERTNSYINLSKHLNSIFKKHGVGYTIINGCITPIS NDNEIESVQNAVDNGTDSSRSHFERALQLMTDREQPDYRNSIKESISAIESLCRKITGND KGTLGACLKAIEEKGYIHSAMKGAFSQLYGYTSDQGGIRHALTEEDVNPTLAEAKFMLVT CSAFSNYLLSKISD >gi|223713523|gb|ACDM01000075.1| GENE 138 145983 - 146555 75 190 aa, chain - ## HITS:1 COG:no KEGG:ECS88_4854 NR:ns ## KEGG: ECS88_4854 # Name: not_defined # Def: putative lysogenic conversion protein from bacteriophage P2-EC53 # Organism: E.coli_S88 # Pathway: not_defined # 1 190 19 208 208 360 100.0 1e-98 MVDASAQPHIVVTLEPNPWAAFYFDINIANTGNAPAYNVEVVFDPPLVNAEHREKSEIPF SKVSVLKNGQSLTSNLCKYEQIKDQIYNINISWASKPKSNDRETNEYVYDMATFEGISYL GARSPLTQIAEQIKGIREDWKPIAQGAKKVKADVYTSSDRNEERTYLQEQHDLAIKRRDE KREKRLESGE Prediction of potential genes in microbial genomes Time: Mon May 16 19:21:37 2011 Seq name: gi|223713522|gb|ACDM01000076.1| Escherichia sp. 4_1_40B cont1.76, whole genome shotgun sequence Length of sequence - 9538 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 2, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 + CDS 211 - 624 252 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 657 - 863 77 ## COG2801 Transposase and inactivated derivatives 3 1 Op 3 . + CDS 946 - 1203 147 ## ECS88_4859 conserved hypothetical protein; KpLE2 phage-like element + Term 1397 - 1426 2.5 4 2 Op 1 35/0.000 - CDS 1761 - 2528 228 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 2 Op 2 20/0.000 - CDS 2529 - 3485 849 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 6 2 Op 3 3/0.000 - CDS 3482 - 4459 738 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 7 2 Op 4 . - CDS 4477 - 5379 865 ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component - Term 5387 - 5414 1.5 8 2 Op 5 2/0.000 - CDS 5424 - 7748 2284 ## COG4772 Outer membrane receptor for Fe3+-dicitrate 9 2 Op 6 6/0.000 - CDS 7835 - 8788 659 ## COG3712 Fe2+-dicitrate sensor, membrane component 10 2 Op 7 . - CDS 8785 - 9306 414 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 9334 - 9393 5.9 Predicted protein(s) >gi|223713522|gb|ACDM01000076.1| GENE 1 211 - 624 252 137 aa, chain + ## HITS:1 COG:b4285 KEGG:ns NR:ns ## COG: b4285 COG2801 # Protein_GI_number: 16132106 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 137 62 198 198 277 98.0 4e-75 MGHWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNHLERQFAVTEPNQVWCGDVTYIW TGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQAIKAVII RAGSSGSYCGDTGSGRV >gi|223713522|gb|ACDM01000076.1| GENE 2 657 - 863 77 68 aa, chain + ## HITS:1 COG:VC0257 KEGG:ns NR:ns ## COG: VC0257 COG2801 # Protein_GI_number: 15640286 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Vibrio cholerae # 1 68 223 290 290 98 66.0 2e-21 MERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKN SNAEASFS >gi|223713522|gb|ACDM01000076.1| GENE 3 946 - 1203 147 85 aa, chain + ## HITS:1 COG:no KEGG:ECS88_4859 NR:ns ## KEGG: ECS88_4859 # Name: yjhV # Def: conserved hypothetical protein; KpLE2 phage-like element # Organism: E.coli_S88 # Pathway: not_defined # 1 85 53 137 137 182 100.0 3e-45 MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFPLAKKGEGRARLPSLYA SFGKLGETPTHKDIIDNNRSINWPV >gi|223713522|gb|ACDM01000076.1| GENE 4 1761 - 2528 228 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 225 2 226 245 92 25 1e-18 MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVF LGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVN VAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRL MGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAE IHPEPVSGRPMCLMR >gi|223713522|gb|ACDM01000076.1| GENE 5 2529 - 3485 849 318 aa, chain - ## HITS:1 COG:fecD KEGG:ns NR:ns ## COG: fecD COG0609 # Protein_GI_number: 16132109 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1 318 1 318 318 493 99.0 1e-139 MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALF VGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGM AGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDW SFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGV AACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGV LTAIIGAPWFVWLLVRMR >gi|223713522|gb|ACDM01000076.1| GENE 6 3482 - 4459 738 325 aa, chain - ## HITS:1 COG:fecC KEGG:ns NR:ns ## COG: fecC COG0609 # Protein_GI_number: 16132110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1 325 8 332 332 496 99.0 1e-140 MLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALLPGHTPTLPEALVQNLRLPRSLVA VLIGASLALAGTLLQTLTHNPMASPSLLGINSGAALAMALTSALSPTPIAGYSLSFIAAC GGGVSWLLVMTAGGGFRHTHDRNKLILAGIALSAFCMGLTRITLLLAEDHAYGIFYWLAG GVSHARWQDVWQLLPVVVTAVPVVLLLANQLNLLNLSDSTAHTLGVNLTRLRLVINMLVL LLVGACVSVAGPVAFIGLLVPHLARFWAGFDQRNVLPVSMLLGATLMLLADVLARALAFP GDLPAGAVLALIGSPCFVWLVRRRG >gi|223713522|gb|ACDM01000076.1| GENE 7 4477 - 5379 865 300 aa, chain - ## HITS:1 COG:fecB KEGG:ns NR:ns ## COG: fecB COG4594 # Protein_GI_number: 16132111 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 300 3 302 302 549 99.0 1e-156 MLAFIRFVFAGLLLVISHAFAATVQDEHGTFTLEKTPQRIVVLELSFADALAAVDVSPIG IADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDLIIADSSRHAGVYIALQQI APVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQHKERMAQWASQLPKGTRVAFG TSREQQFNLHTQETWTGSVLASLGLNVPAAMAGASMPSIGLEQLLAVNPAWLLVAHYREE SIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRGIFAAERIAADTVKIFHHQPLTVVK >gi|223713522|gb|ACDM01000076.1| GENE 8 5424 - 7748 2284 774 aa, chain - ## HITS:1 COG:fecA KEGG:ns NR:ns ## COG: fecA COG4772 # Protein_GI_number: 16132112 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for Fe3+-dicitrate # Organism: Escherichia coli K12 # 1 774 1 774 774 1539 99.0 0 MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLDKALNQYAAHSGFTLSV DASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGD WLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNF GIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQS VGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGT RGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQST RPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGI EPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAH AWYLDDKIDIGNWTITPGMRFEHIASYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNL YANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYD SNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNL VPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGAR VAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF >gi|223713522|gb|ACDM01000076.1| GENE 9 7835 - 8788 659 317 aa, chain - ## HITS:1 COG:fecR KEGG:ns NR:ns ## COG: fecR COG3712 # Protein_GI_number: 16132113 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Escherichia coli K12 # 1 317 1 317 317 567 100.0 1e-161 MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQL GGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSR QQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTAL GTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDEST SWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTL PVKIQSITRYWINISPL >gi|223713522|gb|ACDM01000076.1| GENE 10 8785 - 9306 414 173 aa, chain - ## HITS:1 COG:fecI KEGG:ns NR:ns ## COG: fecI COG1595 # Protein_GI_number: 16132114 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Escherichia coli K12 # 1 173 1 173 173 326 100.0 1e-89 MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL Prediction of potential genes in microbial genomes Time: Mon May 16 19:21:40 2011 Seq name: gi|223713521|gb|ACDM01000077.1| Escherichia sp. 4_1_40B cont1.77, whole genome shotgun sequence Length of sequence - 3388 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 699 - 758 6.3 1 1 Tu 1 . + CDS 839 - 1096 135 ## ECB_04162 hypothetical protein + Prom 1674 - 1733 4.9 2 2 Tu 1 . + CDS 1829 - 3187 1531 ## COG4222 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|223713521|gb|ACDM01000077.1| GENE 1 839 - 1096 135 85 aa, chain + ## HITS:1 COG:no KEGG:ECB_04162 NR:ns ## KEGG: ECB_04162 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 85 13 97 97 135 100.0 4e-31 MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCEREIINNKNIIKKLMFFLS DVNHTKKDVVQSALNIIIDITSGDI >gi|223713521|gb|ACDM01000077.1| GENE 2 1829 - 3187 1531 452 aa, chain + ## HITS:1 COG:alr4238_3 KEGG:ns NR:ns ## COG: alr4238_3 COG4222 # Protein_GI_number: 17231730 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 157 329 3 183 205 61 29.0 3e-09 MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAFASAFPNGLPVGIGSGL LFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAPLLMTIRVQNGKAEAIDPR PLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRGLDTEGITPDGKGGYWLCDEY GPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKWRQANRGFEGLTRMPDGRIIVAV QSTLDIDTKSKKKALFTRLVSFDPASGKTAMYGYPIDSAAYSKNSDAKIGDIVALDNQHI LLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKPGEYPEFDDEKTLSQRGITLAQKTQVV DLRSLGWQQEKAEGLALIDSKTLAVANDNDFGVKVAMQHPVEGKTFKDYRVNAEGKLTLD DKQVETTLRVKPLEKPESDSELWIVTLPEALK Prediction of potential genes in microbial genomes Time: Mon May 16 19:21:43 2011 Seq name: gi|223713520|gb|ACDM01000078.1| Escherichia sp. 4_1_40B cont1.78, whole genome shotgun sequence Length of sequence - 3047 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 38 - 1423 578 ## COG3436 Transposase and inactivated derivatives 2 1 Op 2 6/0.000 - CDS 1473 - 1820 278 ## COG3436 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 1817 - 2206 138 ## COG2963 Transposase and inactivated derivatives - Prom 2287 - 2346 2.2 4 2 Tu 1 . - CDS 2552 - 2986 194 ## ECUMN_4871 hypothetical protein Predicted protein(s) >gi|223713520|gb|ACDM01000078.1| GENE 1 38 - 1423 578 461 aa, chain - ## HITS:1 COG:ECs0330 KEGG:ns NR:ns ## COG: ECs0330 COG3436 # Protein_GI_number: 15829584 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 461 1 512 512 894 89.0 0 MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKAS RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE >gi|223713520|gb|ACDM01000078.1| GENE 2 1473 - 1820 278 115 aa, chain - ## HITS:1 COG:Z2127 KEGG:ns NR:ns ## COG: Z2127 COG3436 # Protein_GI_number: 15801566 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 115 72 186 186 223 98.0 6e-59 MIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIFIFRGRSGSQVKLLWST GDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDWRQPKRLLTSLTML >gi|223713520|gb|ACDM01000078.1| GENE 3 1817 - 2206 138 129 aa, chain - ## HITS:1 COG:ECs0328 KEGG:ns NR:ns ## COG: ECs0328 COG2963 # Protein_GI_number: 15829582 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 129 5 133 133 235 96.0 2e-62 MSDMQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGINANLLFKWRQQWR EGKLLLPSSESPQLLPVTLDATAEQPESLAEAPETLSISCEVTFRHGTLRFNGNVSEKLL TLLIQELKR >gi|223713520|gb|ACDM01000078.1| GENE 4 2552 - 2986 194 144 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_4871 NR:ns ## KEGG: ECUMN_4871 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 144 30 173 173 297 100.0 7e-80 MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQRGNDGQPPWFEHDQMTV AEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVMCDEDYEGEKCCPRCGTGV YSRAWGRQEVPSEDARADNPLQRL Prediction of potential genes in microbial genomes Time: Mon May 16 19:21:57 2011 Seq name: gi|223713519|gb|ACDM01000079.1| Escherichia sp. 4_1_40B cont1.79, whole genome shotgun sequence Length of sequence - 37505 bp Number of predicted genes - 41, with homology - 41 Number of transcription units - 22, operones - 8 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 22 - 591 486 ## ECS88_4881 hypothetical protein + Prom 698 - 757 4.1 2 2 Tu 1 . + CDS 791 - 991 97 ## ECO103_3574 hypothetical protein + Prom 1806 - 1865 4.7 3 3 Op 1 . + CDS 1966 - 2334 205 ## ECED1_5187 antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage 4 3 Op 2 . + CDS 2424 - 2798 198 ## ECED1_3493 toxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage 5 3 Op 3 . + CDS 2810 - 3283 207 ## ECED1_4873 hypothetical protein 6 3 Op 4 . + CDS 3295 - 3492 150 ## EC55989_4897 hypothetical protein + Term 3523 - 3555 3.0 7 4 Tu 1 . + CDS 3577 - 3729 62 ## c5146 hypothetical protein + Term 3862 - 3902 -0.9 8 5 Tu 1 . - CDS 4202 - 4387 148 ## ECO26_5503 hypothetical protein + Prom 4655 - 4714 5.7 9 6 Tu 1 . + CDS 4766 - 5416 358 ## COG3183 Predicted restriction endonuclease 10 7 Tu 1 2/0.250 - CDS 5424 - 6404 252 ## COG2801 Transposase and inactivated derivatives - Term 6423 - 6464 2.5 11 8 Op 1 . - CDS 6469 - 7575 592 ## COG3055 Uncharacterized protein conserved in bacteria 12 8 Op 2 . - CDS 7595 - 8311 428 ## G2583_5112 hypothetical protein - Prom 8439 - 8498 5.5 - Term 8968 - 9007 -0.1 13 9 Tu 1 . - CDS 9110 - 9322 125 ## ECS88_4929 hypothetical protein - Prom 9442 - 9501 4.9 + Prom 9478 - 9537 7.3 14 10 Op 1 12/0.000 + CDS 9765 - 10367 64 ## COG0582 Integrase + Prom 10765 - 10824 1.9 15 10 Op 2 3/0.250 + CDS 10844 - 11440 368 ## COG0582 Integrase 16 11 Op 1 4/0.000 + CDS 11921 - 12475 362 ## COG3539 P pilus assembly protein, pilin FimA 17 11 Op 2 7/0.000 + CDS 12540 - 13079 300 ## COG3539 P pilus assembly protein, pilin FimA 18 11 Op 3 10/0.000 + CDS 13116 - 13841 442 ## COG3121 P pilus assembly protein, chaperone PapD 19 11 Op 4 6/0.000 + CDS 13908 - 16544 1427 ## COG3188 P pilus assembly protein, porin PapC 20 11 Op 5 4/0.000 + CDS 16554 - 17084 170 ## COG3539 P pilus assembly protein, pilin FimA 21 11 Op 6 . + CDS 17097 - 17600 277 ## COG3539 P pilus assembly protein, pilin FimA 22 11 Op 7 . + CDS 17620 - 18522 488 ## EcE24377A_4917 protein FimH + Term 18662 - 18701 2.5 - Term 18652 - 18684 6.3 23 12 Tu 1 . - CDS 18695 - 20038 1653 ## COG2610 H+/gluconate symporter and related permeases - Prom 20063 - 20122 2.4 + Prom 20201 - 20260 3.3 24 13 Op 1 7/0.000 + CDS 20378 - 21562 1526 ## COG1312 D-mannonate dehydratase + Term 21569 - 21605 8.6 25 13 Op 2 . + CDS 21643 - 23103 1883 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 23128 - 23171 8.6 26 14 Tu 1 . - CDS 23125 - 23319 68 ## ECBD_3711 hypothetical protein - Prom 23374 - 23433 2.6 + Prom 23161 - 23220 5.0 27 15 Tu 1 . + CDS 23318 - 24091 989 ## COG2186 Transcriptional regulators + Term 24105 - 24142 4.1 - Term 24107 - 24155 0.3 28 16 Tu 1 . - CDS 24232 - 25062 392 ## ECO26_5521 hypothetical protein - Prom 25200 - 25259 6.9 + Prom 25684 - 25743 2.2 29 17 Tu 1 . + CDS 25876 - 26127 200 ## ECO111_5182 DNA replication/recombination/repair protein 30 18 Op 1 . - CDS 26120 - 27031 830 ## COG0583 Transcriptional regulator 31 18 Op 2 . - CDS 27096 - 28268 1202 ## EcE24377A_4927 isoaspartyl dipeptidase (EC:3.4.19.5) 32 18 Op 3 3/0.250 - CDS 28281 - 28742 573 ## COG0700 Uncharacterized membrane protein 33 18 Op 4 . - CDS 28739 - 29434 662 ## COG3314 Uncharacterized protein conserved in bacteria - Prom 29643 - 29702 5.5 + Prom 29511 - 29570 4.8 34 19 Tu 1 . + CDS 29672 - 30226 466 ## COG1859 RNA:NAD 2'-phosphotransferase + Term 30302 - 30351 0.1 - Term 30119 - 30167 1.8 35 20 Tu 1 2/0.250 - CDS 30239 - 31360 834 ## COG0477 Permeases of the major facilitator superfamily - Prom 31410 - 31469 1.9 36 21 Op 1 . - CDS 31485 - 32345 529 ## COG3204 Uncharacterized protein conserved in bacteria 37 21 Op 2 . - CDS 32410 - 32667 125 ## SDY_4595 hypothetical protein 38 21 Op 3 4/0.000 - CDS 32664 - 33431 437 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) 39 21 Op 4 1/0.500 - CDS 33441 - 34592 1358 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB - Prom 34630 - 34689 1.8 40 22 Op 1 4/0.000 - CDS 34708 - 35955 1120 ## COG2733 Predicted membrane protein 41 22 Op 2 . - CDS 36029 - 37288 1162 ## COG0477 Permeases of the major facilitator superfamily - Prom 37415 - 37474 3.6 Predicted protein(s) >gi|223713519|gb|ACDM01000079.1| GENE 1 22 - 591 486 189 aa, chain - ## HITS:1 COG:no KEGG:ECS88_4881 NR:ns ## KEGG: ECS88_4881 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 189 13 201 201 387 100.0 1e-106 MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRLPDVPAATDAAVISRFINALKARID AYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVNRDTWCRAGDYRAPESLAG MIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQQVLERADYLAKEHTKAHCTG ERNFGCSRS >gi|223713519|gb|ACDM01000079.1| GENE 2 791 - 991 97 66 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3574 NR:ns ## KEGG: ECO103_3574 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 63 1 63 64 82 84.0 7e-15 MVIRKKKCRDCGNAITHNTVCCPYCGSVDPFGYYRNTDRIVTILLALIIVVLLTTVSVSV CILCSW >gi|223713519|gb|ACDM01000079.1| GENE 3 1966 - 2334 205 122 aa, chain + ## HITS:1 COG:no KEGG:ECED1_5187 NR:ns ## KEGG: ECED1_5187 # Name: yeeU # Def: antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_ED1a # Pathway: not_defined # 1 122 1 122 122 249 100.0 2e-65 MSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAY HLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPET KK >gi|223713519|gb|ACDM01000079.1| GENE 4 2424 - 2798 198 124 aa, chain + ## HITS:1 COG:no KEGG:ECED1_3493 NR:ns ## KEGG: ECED1_3493 # Name: yeeV # Def: toxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage # Organism: E.coli_ED1a # Pathway: not_defined # 1 124 1 124 124 251 100.0 6e-66 MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLC DAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKH PEKR >gi|223713519|gb|ACDM01000079.1| GENE 5 2810 - 3283 207 157 aa, chain + ## HITS:1 COG:no KEGG:ECED1_4873 NR:ns ## KEGG: ECED1_4873 # Name: yeeW # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 157 6 162 162 320 100.0 7e-87 MLEADRINVQALNMGRIVVDVDGVNLTELINKVAENGYSLRVVEESDQQSTCTLPPFATL AGIRCSTAHITEKDNAWLYSLSHQTSDVGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGL SKTFRRLVITLTRRYGVSLIHLDASAECLPGLPTFNW >gi|223713519|gb|ACDM01000079.1| GENE 6 3295 - 3492 150 65 aa, chain + ## HITS:1 COG:no KEGG:EC55989_4897 NR:ns ## KEGG: EC55989_4897 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 65 125 189 189 125 93.0 7e-28 MKSLTTETALDILIAWLQDNIDCESGIIFDNNEDKTDSAALLPCIEQAREDIRTLRQLQL QHQNR >gi|223713519|gb|ACDM01000079.1| GENE 7 3577 - 3729 62 50 aa, chain + ## HITS:1 COG:no KEGG:c5146 NR:ns ## KEGG: c5146 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 50 1 49 174 73 82.0 2e-12 MSDITAYRPEVVNENTDVICSTSIRRILAVRKSSLLQIDTIIRHQVSDIS >gi|223713519|gb|ACDM01000079.1| GENE 8 4202 - 4387 148 61 aa, chain - ## HITS:1 COG:no KEGG:ECO26_5503 NR:ns ## KEGG: ECO26_5503 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 61 12 72 72 108 100.0 6e-23 MSNKNYESHRKAIVSKGIPPALLNRLTNSDVQVINTFLTRVSKLELSQQEKDWIIKIISM V >gi|223713519|gb|ACDM01000079.1| GENE 9 4766 - 5416 358 216 aa, chain + ## HITS:1 COG:VCA0309 KEGG:ns NR:ns ## COG: VCA0309 COG3183 # Protein_GI_number: 15601074 # Func_class: V Defense mechanisms # Function: Predicted restriction endonuclease # Organism: Vibrio cholerae # 97 210 117 230 234 127 47.0 1e-29 MNKLPDHLPRRYIIEAIHLWDAGETHQFQPARLYEIEYHGRRYPSKAIAGIAATLMTGTQ FTPADFTGGIKSKCVKLLIEQGFHIHLDKAAAAPIADVLFPDELPSQETYLEGAAIKVTV NRYERDKKARDKAVEHHGCQCNVCGVDLVKIYGDIAEGFIHVHHLVPLSAIKEDYQLDPV NDLLPVYPNCHAMLHRRKPPFTPGQLKALMDANKSN >gi|223713519|gb|ACDM01000079.1| GENE 10 5424 - 6404 252 326 aa, chain - ## HITS:1 COG:yjhS KEGG:ns NR:ns ## COG: yjhS COG2801 # Protein_GI_number: 16132130 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 326 1 326 326 668 97.0 0 MNAIISPDYYYILTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPSCHFN DIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGVLIVPCCR GGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPHNKFLGVCWMQG EFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHAYE VIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSS HFSTAARRGIISDKFVEAILQFWRER >gi|223713519|gb|ACDM01000079.1| GENE 11 6469 - 7575 592 368 aa, chain - ## HITS:1 COG:yjhT KEGG:ns NR:ns ## COG: yjhT COG3055 # Protein_GI_number: 16132131 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 368 37 404 404 692 97.0 0 MNKTITALTIIMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAK DKRWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAYYFDKKA EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE LDFTGDNLKWNKLDPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL KKSYSADIHLWYNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVMDSVLISVK DNKVTVQN >gi|223713519|gb|ACDM01000079.1| GENE 12 7595 - 8311 428 238 aa, chain - ## HITS:1 COG:no KEGG:G2583_5112 NR:ns ## KEGG: G2583_5112 # Name: nanC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 238 4 241 241 451 99.0 1e-125 MKKAKILSSVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESN TWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDAT KDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDY RYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL >gi|223713519|gb|ACDM01000079.1| GENE 13 9110 - 9322 125 70 aa, chain - ## HITS:1 COG:no KEGG:ECS88_4929 NR:ns ## KEGG: ECS88_4929 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 70 62 131 131 140 98.0 2e-32 MLILRSLAIIPAWFVSLGHEIVTFPFILEIWGNAGDAFSSTSVGNYGFGHYDLNLPQSQL FAGRYGKQTK >gi|223713519|gb|ACDM01000079.1| GENE 14 9765 - 10367 64 200 aa, chain + ## HITS:1 COG:ECs5271 KEGG:ns NR:ns ## COG: ECs5271 COG0582 # Protein_GI_number: 15834525 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 1 200 1 200 200 402 100.0 1e-112 MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDID LKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQ FYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASN AGRFYGIWDRARGRQRHAVL >gi|223713519|gb|ACDM01000079.1| GENE 15 10844 - 11440 368 198 aa, chain + ## HITS:1 COG:fimE KEGG:ns NR:ns ## COG: fimE COG0582 # Protein_GI_number: 16132134 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli K12 # 1 198 1 198 198 367 100.0 1e-102 MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRI NIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRII RDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFA GLWERNNLINEKLKREEV >gi|223713519|gb|ACDM01000079.1| GENE 16 11921 - 12475 362 184 aa, chain + ## HITS:1 COG:ECs5273 KEGG:ns NR:ns ## COG: ECs5273 COG3539 # Protein_GI_number: 15834527 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1 184 1 182 182 221 91.0 6e-58 MKIKTLAIVVLSALSLSSTAALAETTPTTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLG QVRTASLKQTGATSSAVGFNIQLNDCDTSVATKAAVAFLGTAIDSAHPKVLALQSSAAGS ATNVGVQILDRTGNELTLDGATFSAQTTLNNGTNTIPFQARYYAIGEATPGAANADATFK VQYQ >gi|223713519|gb|ACDM01000079.1| GENE 17 12540 - 13079 300 179 aa, chain + ## HITS:1 COG:fimI KEGG:ns NR:ns ## COG: fimI COG3539 # Protein_GI_number: 16132136 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 179 37 215 215 370 100.0 1e-102 MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQIS SNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSVGEGPGIATNIG VALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ >gi|223713519|gb|ACDM01000079.1| GENE 18 13116 - 13841 442 241 aa, chain + ## HITS:1 COG:ECs5275 KEGG:ns NR:ns ## COG: ECs5275 COG3121 # Protein_GI_number: 15834529 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli O157:H7 # 1 241 1 241 241 456 99.0 1e-128 MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQVQLAVTN NDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFW MNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLIN PTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM E >gi|223713519|gb|ACDM01000079.1| GENE 19 13908 - 16544 1427 878 aa, chain + ## HITS:1 COG:ECs5276 KEGG:ns NR:ns ## COG: ECs5276 COG3188 # Protein_GI_number: 15834530 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 1 878 1 878 878 1719 98.0 0 MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMELN TASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLVGVYGTLLEDNNLSYSVQTGYAGGGD GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR >gi|223713519|gb|ACDM01000079.1| GENE 20 16554 - 17084 170 176 aa, chain + ## HITS:1 COG:ECs5277 KEGG:ns NR:ns ## COG: ECs5277 COG3539 # Protein_GI_number: 15834531 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 318 98.0 4e-87 MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAVAGLGIQLLNE QQNQIPINAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ >gi|223713519|gb|ACDM01000079.1| GENE 21 17097 - 17600 277 167 aa, chain + ## HITS:1 COG:fimG KEGG:ns NR:ns ## COG: fimG COG3539 # Protein_GI_number: 16132140 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 167 1 167 167 254 99.0 4e-68 MKWCKRGYVLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMS AGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLN SGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS >gi|223713519|gb|ACDM01000079.1| GENE 22 17620 - 18522 488 300 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_4917 NR:ns ## KEGG: EcE24377A_4917 # Name: fimH # Def: protein FimH # Organism: E.coli_E24377A # Pathway: not_defined # 1 300 1 300 300 529 100.0 1e-149 MKRVINLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPAVNVGQNLVVDLS TQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRT DKPWPVALYLTPVSSAGGVVIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTG GCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQ GVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIAVTFVYQ >gi|223713519|gb|ACDM01000079.1| GENE 23 18695 - 20038 1653 447 aa, chain - ## HITS:1 COG:ECs5280 KEGG:ns NR:ns ## COG: ECs5280 COG2610 # Protein_GI_number: 15834534 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 704 100.0 0 MHVLNILWVVFGIGLMLVLNLKFKINSMVALLVAALSVGMLAGMDLMSLLHTMKAGFGNT LGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLSVIIIGLIFGLAMFYEVA FIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQPGPVALVNAYGADMGMVYIY GVLVTIPSVICAGLILPKFLGNLERPTPSFLKADQPVDMNNLPSFGVSILVPLIPAIIMI STTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVK SIAMVILIIGAGGVLKQTIIDTGIGDTIGMLMSHGNISPYIMAWLITVLIRLATGQGVVS AMTAAGIISAAILDPATGQLVGVNPALLVLATAAGSNTLTHINDASFWLFKGYFDLSVKD TLKTWGLLELVNSVVGLIIVLIISMVA >gi|223713519|gb|ACDM01000079.1| GENE 24 20378 - 21562 1526 394 aa, chain + ## HITS:1 COG:uxuA KEGG:ns NR:ns ## COG: uxuA COG1312 # Protein_GI_number: 16132143 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Escherichia coli K12 # 1 394 1 394 394 815 99.0 0 MEQTWRWYGPNDPVSLADVRQAGATGVVTALHHIPNGEVWSVEEILKRKAIVEDAGLVWS VVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCYNFMPVLDWTRTDLEYVLP DGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAERFATMSDEDKARLTRNIIAG LPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKAIIPVAEEVGVRMAVHPDDPPRP ILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLR STMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEEHRRKAEGKEDLIPMRPDHGHQMLDDL KKKTNPGYSAIGRLKGLAEVRGVELAIQRAFFSR >gi|223713519|gb|ACDM01000079.1| GENE 25 21643 - 23103 1883 486 aa, chain + ## HITS:1 COG:ECs5282 KEGG:ns NR:ns ## COG: ECs5282 COG0246 # Protein_GI_number: 15834536 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 486 1 486 486 1016 100.0 0 MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNL MPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQT AIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKSAIGYIVEALRLRREKGLKAF TVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHS FLAYLGYLGGYETIADTMTNPDYRKAAFALMMQEQAPTLSMPEGTDLNAYATLLIERFSN PSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLALGVAGWMRYTQGVDEQGNAI DVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR ECVAAL >gi|223713519|gb|ACDM01000079.1| GENE 26 23125 - 23319 68 64 aa, chain - ## HITS:1 COG:no KEGG:ECBD_3711 NR:ns ## KEGG: ECBD_3711 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 64 1 64 64 119 98.0 3e-26 MVLCPLGAVNQIFAGCGVNALSGLQRAILRPLLISNYTISTGSWHVQVGKKTKTGQPNIS LIDQ >gi|223713519|gb|ACDM01000079.1| GENE 27 23318 - 24091 989 257 aa, chain + ## HITS:1 COG:ECs5283 KEGG:ns NR:ns ## COG: ECs5283 COG2186 # Protein_GI_number: 15834537 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 256 1 256 257 496 99.0 1e-140 MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIK GLVEVRRGAGIYVLDSSGSHNTDSSDANVCNDAGPFELLQARQLLESNIAEFAALQATRE DIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPM WIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDI YFDGYLFDSWPLDKVDV >gi|223713519|gb|ACDM01000079.1| GENE 28 24232 - 25062 392 276 aa, chain - ## HITS:1 COG:no KEGG:ECO26_5521 NR:ns ## KEGG: ECO26_5521 # Name: yjiC # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 276 1 276 276 564 98.0 1e-159 MSMPLSNTLQSQIITDNHFLHHPKVDSELTRKYERARLDTENIYLLPLARGNNHNYDGKS VVEIRKIDISEESWPFNYVTEACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAA TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPVSQAKRWTN EQPRIDIYIDQIITVSGVANSSGFALAALLNANIEMGNDPIIGIEAYPGTAEIHAKMGYK VIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK >gi|223713519|gb|ACDM01000079.1| GENE 29 25876 - 26127 200 83 aa, chain + ## HITS:1 COG:no KEGG:ECO111_5182 NR:ns ## KEGG: ECO111_5182 # Name: iraD # Def: DNA replication/recombination/repair protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 83 48 130 130 166 100.0 2e-40 MPEWQVHNQSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYSHTLAISLEIMLYHDD EPLTFDLVWDNGGWRSATLENVS >gi|223713519|gb|ACDM01000079.1| GENE 30 26120 - 27031 830 303 aa, chain - ## HITS:1 COG:yjiE KEGG:ns NR:ns ## COG: yjiE COG0583 # Protein_GI_number: 16132148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 303 1 303 303 603 99.0 1e-172 MDDCGAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNR QVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSII SQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRLFESQLFPVCAS DEHGEALFNLAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALD GCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELEI VLS >gi|223713519|gb|ACDM01000079.1| GENE 31 27096 - 28268 1202 390 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_4927 NR:ns ## KEGG: EcE24377A_4927 # Name: iadA # Def: isoaspartyl dipeptidase (EC:3.4.19.5) # Organism: E.coli_E24377A # Pathway: not_defined # 1 390 1 390 390 760 100.0 0 MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPDCTVVDLSGQIL CPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKT RALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLAN MAAESRVGGLLGGKPGVTVFHMGDSKKALQPVYDLLENCDVPISKLLPTHVNRNVPLFEQ ALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLT HIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLSGKGEILPGNDADLLVMT PELRIEQVYARGKLMVKDGKACVKGTFETA >gi|223713519|gb|ACDM01000079.1| GENE 32 28281 - 28742 573 153 aa, chain - ## HITS:1 COG:ECs5287 KEGG:ns NR:ns ## COG: ECs5287 COG0700 # Protein_GI_number: 15834541 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1 153 1 153 153 261 100.0 4e-70 MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMA LWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTVLLPAMYLMGNPVQNVGRC LGTAEVNAKYYPHIITVCVINALLSIWVMQLIV >gi|223713519|gb|ACDM01000079.1| GENE 33 28739 - 29434 662 231 aa, chain - ## HITS:1 COG:ECs5288 KEGG:ns NR:ns ## COG: ECs5288 COG3314 # Protein_GI_number: 15834542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 231 1 231 231 399 100.0 1e-111 MGIVMTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWRVFDFSVLNGSFG QLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDGLGGLRAAQQLMTPV LKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAYQTSGSAIITNY FSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEERRNPTQGAQA >gi|223713519|gb|ACDM01000079.1| GENE 34 29672 - 30226 466 184 aa, chain + ## HITS:1 COG:kptA KEGG:ns NR:ns ## COG: kptA COG1859 # Protein_GI_number: 16132152 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNA:NAD 2'-phosphotransferase # Organism: Escherichia coli K12 # 1 184 35 218 218 366 100.0 1e-101 MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGL IAGERHYVHLSADEATARKVGARHGSPVILTVKAQEMAKRGLPFWQAENGVWLTSTVAVE FLEW >gi|223713519|gb|ACDM01000079.1| GENE 35 30239 - 31360 834 373 aa, chain - ## HITS:1 COG:yjiJ KEGG:ns NR:ns ## COG: yjiJ COG0477 # Protein_GI_number: 16132153 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 373 20 392 392 561 99.0 1e-160 MLVLTLGMGLGRFLYTPMLPVMMAEGSFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPS RLRPFLLASALASGLLILAMAWLPPFILVLLIRVLAGVASAGMLIFGSTLIMQHTRHPFV LAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSGMMLIALTLLMPSKKHAITP MPLAKTEQQIMSWWLLAILYGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVP GCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASDSPLLLIISSLGFGGTFMGTTSLVM TIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLGNGTSALASATLCGAAALFIAALI STVQLFKLQVVTS >gi|223713519|gb|ACDM01000079.1| GENE 36 31485 - 32345 529 286 aa, chain - ## HITS:1 COG:yjiK KEGG:ns NR:ns ## COG: yjiK COG3204 # Protein_GI_number: 16132154 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 286 38 323 323 548 97.0 1e-156 MTKSISLSKRIFVIVILFVIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNI SSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDER DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSSH >gi|223713519|gb|ACDM01000079.1| GENE 37 32410 - 32667 125 85 aa, chain - ## HITS:1 COG:no KEGG:SDY_4595 NR:ns ## KEGG: SDY_4595 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 85 1 85 85 177 100.0 1e-43 MKEYLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLCIWLTCPPGEEIQWVIP GHTESVYCQQDGGWRCIAHYGISPR >gi|223713519|gb|ACDM01000079.1| GENE 38 32664 - 33431 437 255 aa, chain - ## HITS:1 COG:yjiL KEGG:ns NR:ns ## COG: yjiL COG1924 # Protein_GI_number: 16132155 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Escherichia coli K12 # 1 254 3 256 257 474 96.0 1e-134 MAYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLT GYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMND KCAAGTGRFLEVISRTLGTNVEQLDSITENVTPHAITSMCTVFAESEVISLRSAGVAPEA ILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQRFTHMLESHLGMPVQTHPDAQFAG AIGAAVIGQRQRKRA >gi|223713519|gb|ACDM01000079.1| GENE 39 33441 - 34592 1358 383 aa, chain - ## HITS:1 COG:yjiM KEGG:ns NR:ns ## COG: yjiM COG1775 # Protein_GI_number: 16132156 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Escherichia coli K12 # 1 383 8 390 390 794 100.0 0 MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCS TSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAE FKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRAL ANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRP RILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAI GCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAI ETDYSTSDVGQLSTRVAAFIEML >gi|223713519|gb|ACDM01000079.1| GENE 40 34708 - 35955 1120 415 aa, chain - ## HITS:1 COG:yjiN KEGG:ns NR:ns ## COG: yjiN COG2733 # Protein_GI_number: 16132157 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 13 415 24 426 426 781 100.0 0 MLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVALFRRVPIPIIS RHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFSQPENARRVGQH LLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHQVLLDTLIA QLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISR DRAHQIRHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLK VDINSEDSRVKERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISD TVKSWDARDMSRQIELNIGKDLQFIRVNGTLVGGCIGLILYLLSQLPALFPLGNF >gi|223713519|gb|ACDM01000079.1| GENE 41 36029 - 37288 1162 419 aa, chain - ## HITS:1 COG:ECs5300 KEGG:ns NR:ns ## COG: ECs5300 COG0477 # Protein_GI_number: 15834554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 15 419 6 410 410 698 98.0 0 MNNHFGKGLMAGLKATHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFNADVSLAP AAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMTQFLIARAIQ GTSICFIATVGYVTVQEAFGQTKGIRLMAIITSIVLIAPIIGPLSGAALMHFVHWKVLFA IIAIMGFISFVGLLLAMPETVKRGAVSFSAKSVLRDFRNVFCNRQFLFGAATISLSYIPM MSWVAVSPVILIDAGGLTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ LVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNM VILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAAELAEEQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:22:52 2011 Seq name: gi|223713518|gb|ACDM01000080.1| Escherichia sp. 4_1_40B cont1.80, whole genome shotgun sequence Length of sequence - 40073 bp Number of predicted genes - 41, with homology - 41 Number of transcription units - 20, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 87 - 146 5.8 1 1 Op 1 5/0.273 + CDS 183 - 470 375 ## COG2929 Uncharacterized protein conserved in bacteria 2 1 Op 2 . + CDS 457 - 759 383 ## COG3514 Uncharacterized protein conserved in bacteria - Term 749 - 782 1.2 3 2 Op 1 3/0.364 - CDS 793 - 1749 1047 ## COG0523 Putative GTPases (G3E family) 4 2 Op 2 9/0.000 - CDS 1760 - 1963 280 ## COG2879 Uncharacterized small protein - Term 1974 - 2003 3.5 5 2 Op 3 . - CDS 2013 - 4163 2774 ## COG1966 Carbon starvation protein, predicted membrane protein + Prom 4358 - 4417 5.4 6 3 Tu 1 . + CDS 4540 - 6204 1749 ## COG0840 Methyl-accepting chemotaxis protein - Term 6203 - 6244 7.1 7 4 Op 1 . - CDS 6253 - 7614 1357 ## COG0477 Permeases of the major facilitator superfamily - Prom 7646 - 7705 1.8 - Term 7669 - 7712 1.7 8 4 Op 2 . - CDS 7829 - 8743 511 ## COG1802 Transcriptional regulators - Prom 8768 - 8827 4.0 + Prom 8732 - 8791 3.9 9 5 Tu 1 . + CDS 8882 - 9904 1062 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 9932 - 9970 3.4 - Term 9990 - 10032 11.9 10 6 Tu 1 . - CDS 10044 - 12335 2144 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 12387 - 12446 4.2 - Term 12534 - 12578 5.1 11 7 Op 1 . - CDS 12589 - 13080 493 ## S4661 hypothetical protein 12 7 Op 2 . - CDS 13132 - 13869 824 ## COG1484 DNA replication protein 13 7 Op 3 . - CDS 13872 - 14411 534 ## COG5529 Pyocin large subunit - Prom 14452 - 14511 2.1 - Term 14454 - 14501 7.8 14 8 Op 1 12/0.000 - CDS 14518 - 14991 473 ## COG3610 Uncharacterized conserved protein 15 8 Op 2 . - CDS 14982 - 15806 341 ## COG2966 Uncharacterized conserved protein + Prom 16238 - 16297 4.1 16 9 Op 1 . + CDS 16422 - 17096 309 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 17 9 Op 2 . + CDS 17108 - 17731 281 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 17741 - 17776 2.4 18 10 Tu 1 . - CDS 17769 - 18557 588 ## COG4114 Uncharacterized Fe-S protein - Prom 18647 - 18706 8.3 + Prom 18606 - 18665 4.4 19 11 Tu 1 . + CDS 18698 - 18934 210 ## UTI89_C5074 hypothetical protein - TRNA 18973 - 19059 69.1 # Leu CAG 0 0 - TRNA 19093 - 19179 69.1 # Leu CAG 0 0 - Term 19319 - 19367 4.1 20 12 Tu 1 . - CDS 19379 - 20410 269 ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative - Prom 20433 - 20492 6.0 + Prom 20431 - 20490 3.0 21 13 Op 1 8/0.091 + CDS 20513 - 20926 327 ## COG3050 DNA polymerase III, psi subunit 22 13 Op 2 4/0.273 + CDS 20895 - 21341 753 ## PROTEIN SUPPORTED gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase 23 13 Op 3 3/0.364 + CDS 21356 - 22033 714 ## COG1011 Predicted hydrolase (HAD superfamily) 24 13 Op 4 5/0.273 + CDS 22124 - 23713 1975 ## COG4108 Peptide chain release factor RF-3 + Term 23724 - 23763 8.0 25 14 Op 1 . + CDS 24106 - 24711 733 ## COG2823 Predicted periplasmic or secreted lipoprotein 26 14 Op 2 . + CDS 24838 - 24999 195 ## gi|157368899|ref|YP_001476888.1| hypothetical protein Spro_0654 + Term 25026 - 25068 11.9 + Prom 25034 - 25093 2.3 27 15 Op 1 4/0.273 + CDS 25121 - 26194 901 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily 28 15 Op 2 . + CDS 26191 - 26970 809 ## COG0084 Mg-dependent DNase 29 16 Tu 1 . - CDS 27087 - 27821 593 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 27861 - 27896 4.0 30 17 Tu 1 . - CDS 27922 - 29472 1479 ## EcSMS35_4928 hypothetical protein - Prom 29576 - 29635 4.7 + Prom 29626 - 29685 4.1 31 18 Op 1 7/0.182 + CDS 29730 - 30509 1053 ## COG0274 Deoxyribose-phosphate aldolase 32 18 Op 2 4/0.273 + CDS 30587 - 31909 1857 ## COG0213 Thymidine phosphorylase 33 18 Op 3 9/0.000 + CDS 31961 - 33184 1528 ## COG1015 Phosphopentomutase + Term 33192 - 33225 3.0 34 18 Op 4 . + CDS 33241 - 33960 983 ## COG0813 Purine-nucleoside phosphorylase + Term 33987 - 34038 9.3 35 19 Op 1 2/0.636 - CDS 34121 - 34384 154 ## COG1396 Predicted transcriptional regulators 36 19 Op 2 2/0.636 - CDS 34416 - 35432 1146 ## COG0095 Lipoate-protein ligase A 37 19 Op 3 . - CDS 35460 - 36104 755 ## COG3726 Uncharacterized membrane protein affecting hemolysin expression - Prom 36186 - 36245 4.6 + Prom 36113 - 36172 3.1 38 20 Op 1 5/0.273 + CDS 36210 - 37178 1103 ## COG0560 Phosphoserine phosphatase 39 20 Op 2 1/0.818 + CDS 37227 - 38609 1442 ## COG1066 Predicted ATP-dependent serine protease 40 20 Op 3 . + CDS 38630 - 39862 1379 ## COG3172 Predicted ATPase/kinase involved in NAD metabolism 41 20 Op 4 . + CDS 39896 - 40063 81 ## EcSMS35_4940 hypothetical protein Predicted protein(s) >gi|223713518|gb|ACDM01000080.1| GENE 1 183 - 470 375 95 aa, chain + ## HITS:1 COG:STM4528 KEGG:ns NR:ns ## COG: STM4528 COG2929 # Protein_GI_number: 16767772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 95 1 95 95 158 85.0 2e-39 MPMEFEWDENKAKSNRVKHGIRFEDAVLLFDDPQHLSQQERIENGEYRWQTIGLVYGIVV ILVAHTIRFESGNEIIRIISARKADRKERNRYEHG >gi|223713518|gb|ACDM01000080.1| GENE 2 457 - 759 383 100 aa, chain + ## HITS:1 COG:STM4529 KEGG:ns NR:ns ## COG: STM4529 COG3514 # Protein_GI_number: 16767773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 100 1 100 100 151 85.0 3e-37 MSMVKHKRGTSSTLDVQHEAELKALANKSDEDIDYSDIPPSSDEQWSNAERGKFYRPLKT QASVRIDADVMEWLKRPGKGYQTRLNAILREAMLRDQNKK >gi|223713518|gb|ACDM01000080.1| GENE 3 793 - 1749 1047 318 aa, chain - ## HITS:1 COG:STM4530 KEGG:ns NR:ns ## COG: STM4530 COG0523 # Protein_GI_number: 16767774 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Salmonella typhimurium LT2 # 1 318 1 318 318 586 91.0 1e-167 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEILCQR YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLRERLARINARA PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI GIQLPEEEIRAAFAGLRK >gi|223713518|gb|ACDM01000080.1| GENE 4 1760 - 1963 280 67 aa, chain - ## HITS:1 COG:ECs5312 KEGG:ns NR:ns ## COG: ECs5312 COG2879 # Protein_GI_number: 15834566 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Escherichia coli O157:H7 # 1 67 1 67 67 127 100.0 4e-30 MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDG KGGMRCC >gi|223713518|gb|ACDM01000080.1| GENE 5 2013 - 4163 2774 716 aa, chain - ## HITS:1 COG:ECs5313 KEGG:ns NR:ns ## COG: ECs5313 COG1966 # Protein_GI_number: 15834567 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 716 6 721 721 1340 99.0 0 MDTKKIFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASVSVYLVAYRYYSLYIAQ KVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTL WLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPVPGTIALFGCFLIMIIILAVL ALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPGRVGEVSVIGIVLLVASIYFGGV IAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLILAPRDYLATFLKIGVIVGLALGI VVLNPELKMPAMTQYIDGTGPLWKGALFPFLFITIACGAVSGFHALISSGTTPKLLANET DARFIGYGAMLMESFVAIMALVAASIIEPGLYFAMNTPPAGLGITMPNLHEMGGENAPII MAQLKDVTAHAAATVSSWGFVISPEQILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKV LPMADMGFWYHFGILFEALFILTALDAGTRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGT AGCVGLWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVT VVPAVWLLICTTWALGLKLFSTNPQMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVN NYTNAGLSILFLIVVYSIIFYGFKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH >gi|223713518|gb|ACDM01000080.1| GENE 6 4540 - 6204 1749 554 aa, chain + ## HITS:1 COG:ECs5315 KEGG:ns NR:ns ## COG: ECs5315 COG0840 # Protein_GI_number: 15834569 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 # 1 554 1 554 554 899 99.0 0 MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVAL LQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTA AAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQDDRLYDI AVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKP IEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAA SLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQK IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL IEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEM DRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKNVTPATPR KMAVADSGENWETF >gi|223713518|gb|ACDM01000080.1| GENE 7 6253 - 7614 1357 453 aa, chain - ## HITS:1 COG:yjiZ KEGG:ns NR:ns ## COG: yjiZ COG0477 # Protein_GI_number: 16132177 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 453 1 453 453 877 99.0 0 MEKENITLDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAMLLLFFAAVINYLDRSS LSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRLMLGLGMFFWSLF QAMSGMVHSFTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVA VSPPILAAMMLVMGWRGMFITIGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNA RRDPLSFAEWRSLFRNRTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAA IPFLFGAAGMLVNGYVTDWLVKGGMAPIKSRKICIIAGMFCSAAFTLVVPQATTSMTAVL LIGMALFCIHFAGTSCWGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHS FRLALIICGCVTAAGALAYIFLVRQPINDPRKD >gi|223713518|gb|ACDM01000080.1| GENE 8 7829 - 8743 511 304 aa, chain - ## HITS:1 COG:ECs5317 KEGG:ns NR:ns ## COG: ECs5317 COG1802 # Protein_GI_number: 15834571 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 37 304 1 268 268 516 100.0 1e-146 MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQ VGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAG VSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPD HDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIF HFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENT RYAH >gi|223713518|gb|ACDM01000080.1| GENE 9 8882 - 9904 1062 340 aa, chain + ## HITS:1 COG:yjjN KEGG:ns NR:ns ## COG: yjjN COG1063 # Protein_GI_number: 16132179 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 340 6 345 345 671 99.0 0 MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVL GHEICGEIVGLGKNIANLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGF SEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAIAPGEQVLVVGAGPIGLGAAA IAKADGAQVVVADTSPARREHVATRLELPVLDPSAEDFDAQLRAQFGGSLAQKVIDATGN QHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHKKETTMMGSRNATPEDFAKVGRLMA EGKITADMMLTHRYPFATLAETYERDVINNRELIKGVITF >gi|223713518|gb|ACDM01000080.1| GENE 10 10044 - 12335 2144 763 aa, chain - ## HITS:1 COG:mdoB KEGG:ns NR:ns ## COG: mdoB COG1368 # Protein_GI_number: 16132180 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Escherichia coli K12 # 14 763 1 750 750 1523 99.0 0 MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAV LYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALG SVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNE AFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFF PQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRND WGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQS FSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRG DKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPD IIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLA DFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKD TVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQL GDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEKTLVLGNEVTTTTLHFDNP TDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG >gi|223713518|gb|ACDM01000080.1| GENE 11 12589 - 13080 493 163 aa, chain - ## HITS:1 COG:no KEGG:S4661 NR:ns ## KEGG: S4661 # Name: yjjA # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 163 3 165 165 264 99.0 1e-69 MKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNSTTQEGGWSLASLTNLLS SGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGI QGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS >gi|223713518|gb|ACDM01000080.1| GENE 12 13132 - 13869 824 245 aa, chain - ## HITS:1 COG:ECs5321 KEGG:ns NR:ns ## COG: ECs5321 COG1484 # Protein_GI_number: 15834575 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 473 100.0 1e-133 MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRS GIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAIC NELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYE KVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV TGKEY >gi|223713518|gb|ACDM01000080.1| GENE 13 13872 - 14411 534 179 aa, chain - ## HITS:1 COG:ECs1768 KEGG:ns NR:ns ## COG: ECs1768 COG5529 # Protein_GI_number: 15831022 # Func_class: R General function prediction only # Function: Pyocin large subunit # Organism: Escherichia coli O157:H7 # 78 153 184 266 346 77 51.0 1e-14 MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG >gi|223713518|gb|ACDM01000080.1| GENE 14 14518 - 14991 473 157 aa, chain - ## HITS:1 COG:STM4545 KEGG:ns NR:ns ## COG: STM4545 COG3610 # Protein_GI_number: 16767789 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 244 87.0 6e-65 MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIE WSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEP LMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV >gi|223713518|gb|ACDM01000080.1| GENE 15 14982 - 15806 341 274 aa, chain - ## HITS:1 COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 274 4 277 277 540 98.0 1e-153 MDSHYLNNTQHVYDKGRVMQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALG MDSVESSISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHHLLDYKGV EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTVAMYIRQLLAQRH LHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHI NTGLARWAIASLLTLATCVGVVMALTIWGLRGWV >gi|223713518|gb|ACDM01000080.1| GENE 16 16422 - 17096 309 224 aa, chain + ## HITS:1 COG:ECs5325 KEGG:ns NR:ns ## COG: ECs5325 COG2197 # Protein_GI_number: 15834579 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 224 18 241 241 424 100.0 1e-119 MQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLI SQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLT SPAMTETHDFSYRSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLA IHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS >gi|223713518|gb|ACDM01000080.1| GENE 17 17108 - 17731 281 207 aa, chain + ## HITS:1 COG:ECs5326 KEGG:ns NR:ns ## COG: ECs5326 COG2197 # Protein_GI_number: 15834580 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 207 19 225 225 395 99.0 1e-110 MSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVIFSFSAMRSERREGLSCLT ELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQAT DRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVS SDAGLLEAADILLCMRHCEASNVLHPY >gi|223713518|gb|ACDM01000080.1| GENE 18 17769 - 18557 588 262 aa, chain - ## HITS:1 COG:ECs5327 KEGG:ns NR:ns ## COG: ECs5327 COG4114 # Protein_GI_number: 15834581 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 509 96.0 1e-144 MAYRSAPLYEDVIWRTHLQPQDAGLAQAIRATIAEHREHLLEFIRLDEPAPLNAMTLAQW SSTNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDV SPEHFHVEFHETGRAACFWVDVCEDKNATLHSPQQRMETLISQALVPVVQALEATGEING KLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKMLTNGEDNPLWRTVVLRDGLLV RRTCCQRYRLPDVQQCGDCTLK >gi|223713518|gb|ACDM01000080.1| GENE 19 18698 - 18934 210 78 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C5074 NR:ns ## KEGG: UTI89_C5074 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 78 38 115 115 122 98.0 4e-27 MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLILTPVMLYHKQLRHYVLLPS CLALIAGIMLMIMNLNQG >gi|223713518|gb|ACDM01000080.1| GENE 20 19379 - 20410 269 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 78 334 106 368 371 108 30 7e-23 MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMG DNARFSLVATADDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRS AEQMLADYAPLNKVDSARRCGLYFGRLEKQPEFDADKFWGEYNVDGLTVKTLPGVFSRDG LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL AANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELR IVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG >gi|223713518|gb|ACDM01000080.1| GENE 21 20513 - 20926 327 137 aa, chain + ## HITS:1 COG:ECs5330 KEGG:ns NR:ns ## COG: ECs5330 COG3050 # Protein_GI_number: 15834584 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, psi subunit # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 252 99.0 1e-67 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA LTVSPDQVLQLTPEKISMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA LWQQICTYEHDFFPRND >gi|223713518|gb|ACDM01000080.1| GENE 22 20895 - 21341 753 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase [Escherichia coli O157:H7 EDL933] # 1 148 1 148 148 294 100 5e-79 MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVV LDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGF NEATIRRNYYPTTDGREDAIIMALPISM >gi|223713518|gb|ACDM01000080.1| GENE 23 21356 - 22033 714 225 aa, chain + ## HITS:1 COG:ECs5332 KEGG:ns NR:ns ## COG: ECs5332 COG1011 # Protein_GI_number: 15834586 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1 225 1 225 225 469 99.0 1e-132 MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITS LQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGF SALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAES DILGGINAGLATCWLNAHNREQPEGIAPTWTVSSLHELEQLLCKH >gi|223713518|gb|ACDM01000080.1| GENE 24 22124 - 23713 1975 529 aa, chain + ## HITS:1 COG:ECs5333 KEGG:ns NR:ns ## COG: ECs5333 COG4108 # Protein_GI_number: 15834587 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Escherichia coli O157:H7 # 1 529 1 529 529 1088 100.0 0 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWM EMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE DRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFK GVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNE FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFV FKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAY PGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLS EEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAK KFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH >gi|223713518|gb|ACDM01000080.1| GENE 25 24106 - 24711 733 201 aa, chain + ## HITS:1 COG:ECs5334 KEGG:ns NR:ns ## COG: ECs5334 COG2823 # Protein_GI_number: 15834588 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Escherichia coli O157:H7 # 1 201 1 201 201 264 99.0 8e-71 MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAIT AKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLH VRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDR AESIAKAVDGVKSVKNDLKTK >gi|223713518|gb|ACDM01000080.1| GENE 26 24838 - 24999 195 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|157368899|ref|YP_001476888.1| ## NR: gi|157368899|ref|YP_001476888.1| hypothetical protein Spro_0654 [Serratia proteamaculans 568] # 1 53 33 85 85 77 92.0 4e-13 MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP >gi|223713518|gb|ACDM01000080.1| GENE 27 25121 - 26194 901 357 aa, chain + ## HITS:1 COG:ECs5335 KEGG:ns NR:ns ## COG: ECs5335 COG4667 # Protein_GI_number: 15834589 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 1 357 1 357 357 728 99.0 0 MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGT SAGAQNLSAYICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQ MDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGIN YLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQ HHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLAT VGKLLTEKAPLTRHLVPVVTPESIVIPPASVANDTLVAEVIDAPQANDPTFNNEDLA >gi|223713518|gb|ACDM01000080.1| GENE 28 26191 - 26970 809 259 aa, chain + ## HITS:1 COG:yjjVm KEGG:ns NR:ns ## COG: yjjVm COG0084 # Protein_GI_number: 16132266 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli K12 # 1 258 1 258 259 496 96.0 1e-140 MICRFIDTHCHFDFPPFSGDEEASLQRAEQAGVGKIIVPATEAENFARVQALAEKYQPLY GALGLHPGMLEKHSDASLEQLQQALERHPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQL KLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGG TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRLEP ADEIAEVLLNNTYTLFNVL >gi|223713518|gb|ACDM01000080.1| GENE 29 27087 - 27821 593 244 aa, chain - ## HITS:1 COG:yjjW KEGG:ns NR:ns ## COG: yjjW COG1180 # Protein_GI_number: 16132196 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1 244 44 287 287 473 95.0 1e-133 MGRCNDCGECVPQCPHQALQIIDGKVAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVL NHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEK LLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQ HIEELAALIKGLGDVPVRLNAFHAHGVYGEAQSWPSATQEDIEPLADALKVRGVSRLIFP ALYL >gi|223713518|gb|ACDM01000080.1| GENE 30 27922 - 29472 1479 516 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_4928 NR:ns ## KEGG: EcSMS35_4928 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 516 1 516 516 1072 99.0 0 MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPALPAEARRALDEGVICDM FEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLG QLDALLQPYVRILTQDEIDIRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAEL KQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSL PLAGGGSTLVRLNLKAIAERSESLEDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENS FLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEATANEVGYRISAQLAEFV ANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGIS DILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEG SRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ >gi|223713518|gb|ACDM01000080.1| GENE 31 29730 - 30509 1053 259 aa, chain + ## HITS:1 COG:ECs5340 KEGG:ns NR:ns ## COG: ECs5340 COG0274 # Protein_GI_number: 15834594 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Escherichia coli O157:H7 # 1 259 1 259 259 446 100.0 1e-125 MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL KEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFD LVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPE SARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSL LASLLKALGHGDGKSASSY >gi|223713518|gb|ACDM01000080.1| GENE 32 30587 - 31909 1857 440 aa, chain + ## HITS:1 COG:ZdeoA KEGG:ns NR:ns ## COG: ZdeoA COG0213 # Protein_GI_number: 15804954 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Escherichia coli O157:H7 EDL933 # 1 440 1 440 440 816 100.0 0 MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLT MAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHT GGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSI PLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLT DMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKL QAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALG MAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENSWQEAAKAVKAA IKLADKAPESTPTVYRRISE >gi|223713518|gb|ACDM01000080.1| GENE 33 31961 - 33184 1528 407 aa, chain + ## HITS:1 COG:ECs5342 KEGG:ns NR:ns ## COG: ECs5342 COG1015 # Protein_GI_number: 15834596 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Escherichia coli O157:H7 # 1 407 1 407 407 840 100.0 0 MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLG LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF >gi|223713518|gb|ACDM01000080.1| GENE 34 33241 - 33960 983 239 aa, chain + ## HITS:1 COG:ECs5343 KEGG:ns NR:ns ## COG: ECs5343 COG0813 # Protein_GI_number: 15834597 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 469 99.0 1e-132 MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISV MGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIR FKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLFYSPDGEMFDVMEKYGILGVE MEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE >gi|223713518|gb|ACDM01000080.1| GENE 35 34121 - 34384 154 87 aa, chain - ## HITS:1 COG:ECs5344 KEGG:ns NR:ns ## COG: ECs5344 COG1396 # Protein_GI_number: 15834598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 87 1 87 87 150 96.0 8e-37 MIDLENQEREIINLMFSQGISWLTAVRIRHKLSLAEVSKMLGISINSLKQIEKTERLSSN IKSKMAGIYGCPPELLICPSWMTAEHK >gi|223713518|gb|ACDM01000080.1| GENE 36 34416 - 35432 1146 338 aa, chain - ## HITS:1 COG:Z5988_2 KEGG:ns NR:ns ## COG: Z5988_2 COG0095 # Protein_GI_number: 15804958 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Escherichia coli O157:H7 EDL933 # 1 338 5 342 342 694 98.0 0 MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRR MEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASG RNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITS VRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPDKTPDLPNFTETFARQS SWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQG CLYRADMLQQECEALLVDFPEQEKELRELSTWIAGAVR >gi|223713518|gb|ACDM01000080.1| GENE 37 35460 - 36104 755 214 aa, chain - ## HITS:1 COG:ECs5345_1 KEGG:ns NR:ns ## COG: ECs5345_1 COG3726 # Protein_GI_number: 15834599 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein affecting hemolysin expression # Organism: Escherichia coli O157:H7 # 1 205 1 205 224 365 99.0 1e-101 MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLKELARTLARQVTLNV APLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKA GGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLT RTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE >gi|223713518|gb|ACDM01000080.1| GENE 38 36210 - 37178 1103 322 aa, chain + ## HITS:1 COG:ECs5346 KEGG:ns NR:ns ## COG: ECs5346 COG0560 # Protein_GI_number: 15834600 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Escherichia coli O157:H7 # 1 322 1 322 322 635 99.0 0 MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKQRLTQYQSKLG AAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRSPGLLVMDMDST AIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENL PLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVVANELEIMDGKFTGNVI GDIVDAQYKAKTLTHLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKTE VTIRHADLMGVFCILSGSLNQK >gi|223713518|gb|ACDM01000080.1| GENE 39 37227 - 38609 1442 460 aa, chain + ## HITS:1 COG:ECs5347 KEGG:ns NR:ns ## COG: ECs5347 COG1066 # Protein_GI_number: 15834601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Escherichia coli O157:H7 # 1 460 1 460 460 902 99.0 0 MAKAPKRAFVCNECGADYPRWQGQCNACHAWNTITEVRLAASPTVARNERLSGYAGSAGV AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL >gi|223713518|gb|ACDM01000080.1| GENE 40 38630 - 39862 1379 410 aa, chain + ## HITS:1 COG:nadR_3 KEGG:ns NR:ns ## COG: nadR_3 COG3172 # Protein_GI_number: 16132207 # Func_class: H Coenzyme transport and metabolism # Function: Predicted ATPase/kinase involved in NAD metabolism # Organism: Escherichia coli K12 # 224 409 1 186 187 380 99.0 1e-105 MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFP RQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDDTRDRALFEDSAMSQQPTV PDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKKFMAEKGIQPDLIYTSEE ADAPQYMEHLGIETVLVDPKRTFMSISGAQIRENPFRYWEYIPTEVKPFFVRTVAILGGE SSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFAVK YANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLG SSVDRKEFQNLLVEMLEENNIEFVRVEEDDYDSRFLRCVELVREMMGEQG >gi|223713518|gb|ACDM01000080.1| GENE 41 39896 - 40063 81 55 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_4940 NR:ns ## KEGG: EcSMS35_4940 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 55 1 55 55 85 98.0 7e-16 MSFFDELKTSLEEAVEIKQGLKKPARVTRHEIEDAKAVVDRKRCSRRIRHSVLNA Prediction of potential genes in microbial genomes Time: Mon May 16 19:23:19 2011 Seq name: gi|223713517|gb|ACDM01000081.1| Escherichia sp. 4_1_40B cont1.81, whole genome shotgun sequence Length of sequence - 28227 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 16, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 97 - 1764 2307 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 1861 - 1920 3.2 2 2 Op 1 4/0.444 + CDS 1975 - 3912 1752 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 3 2 Op 2 . + CDS 4002 - 4328 380 ## COG2973 Trp operon repressor + Term 4350 - 4415 3.1 4 3 Tu 1 . - CDS 4413 - 4934 422 ## COG1986 Uncharacterized conserved protein - Prom 4961 - 5020 4.3 + Prom 4885 - 4944 2.7 5 4 Tu 1 . + CDS 4986 - 5633 650 ## COG0406 Fructose-2,6-bisphosphatase 6 5 Tu 1 . - CDS 5630 - 6499 905 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 6692 - 6751 4.5 + Prom 6606 - 6665 4.1 7 6 Op 1 4/0.444 + CDS 6710 - 7183 519 ## COG3045 Uncharacterized protein conserved in bacteria 8 6 Op 2 40/0.000 + CDS 7196 - 7885 628 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 9 6 Op 3 6/0.111 + CDS 7885 - 9309 1261 ## COG0642 Signal transduction histidine kinase 10 6 Op 4 . + CDS 9367 - 10719 1085 ## COG4452 Inner membrane protein involved in colicin E2 resistance + Term 10736 - 10766 3.0 - Term 10723 - 10753 3.0 11 7 Tu 1 . - CDS 10778 - 11494 862 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 11879 - 11938 8.1 12 8 Tu 1 . + CDS 12130 - 12816 500 ## COG0565 rRNA methylase + Prom 12894 - 12953 4.1 13 9 Op 1 11/0.000 + CDS 13176 - 15638 2263 ## COG0527 Aspartokinases 14 9 Op 2 19/0.000 + CDS 15640 - 16572 755 ## COG0083 Homoserine kinase 15 9 Op 3 . + CDS 16573 - 17859 1453 ## COG0498 Threonine synthase + Term 17883 - 17922 4.2 + Prom 17868 - 17927 2.9 16 10 Tu 1 . + CDS 18073 - 18369 154 ## ECUMN_0005 conserved hypothetical protein; putative exported protein + Term 18406 - 18445 3.7 - Term 18359 - 18403 2.2 17 11 Op 1 5/0.222 - CDS 18523 - 19299 893 ## COG3022 Uncharacterized protein conserved in bacteria 18 11 Op 2 . - CDS 19369 - 20799 812 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 - Prom 20856 - 20915 4.3 + Prom 20972 - 21031 1.9 19 12 Tu 1 . + CDS 21078 - 22031 1300 ## COG0176 Transaldolase + Term 22039 - 22079 9.3 + Prom 22057 - 22116 2.4 20 13 Tu 1 . + CDS 22146 - 22733 692 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 - Term 22723 - 22760 6.2 21 14 Tu 1 4/0.444 - CDS 22768 - 23334 754 ## COG1584 Predicted membrane protein - Prom 23403 - 23462 4.5 - Term 23363 - 23403 3.2 22 15 Op 1 . - CDS 23483 - 24196 567 ## COG4735 Uncharacterized protein conserved in bacteria 23 15 Op 2 . - CDS 24222 - 24626 375 ## JW0012 hypothetical protein - Prom 24719 - 24778 4.8 + Prom 24708 - 24767 5.7 24 16 Op 1 31/0.000 + CDS 25003 - 26919 2335 ## COG0443 Molecular chaperone + Term 26948 - 26994 11.0 25 16 Op 2 . + CDS 27008 - 28138 1199 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain Predicted protein(s) >gi|223713517|gb|ACDM01000081.1| GENE 1 97 - 1764 2307 555 aa, chain - ## HITS:1 COG:ECs5349 KEGG:ns NR:ns ## COG: ECs5349 COG0488 # Protein_GI_number: 15834603 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 555 1 555 555 1104 100.0 0 MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIE GEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDK LAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEK PDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPW EGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNST EYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGA GKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNT EMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETL RALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGA DALEPKRIKYKRIAK >gi|223713517|gb|ACDM01000081.1| GENE 2 1975 - 3912 1752 645 aa, chain + ## HITS:1 COG:ECs5350 KEGG:ns NR:ns ## COG: ECs5350 COG0741 # Protein_GI_number: 15834604 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli O157:H7 # 1 645 10 654 654 1239 99.0 0 MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAWDNRQMDVVEQMMPRLK DYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLA FSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK WRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG REAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMY WNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAY NDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPS YSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAV AFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY >gi|223713517|gb|ACDM01000081.1| GENE 3 4002 - 4328 380 108 aa, chain + ## HITS:1 COG:ECs5351 KEGG:ns NR:ns ## COG: ECs5351 COG2973 # Protein_GI_number: 15834605 # Func_class: K Transcription # Function: Trp operon repressor # Organism: Escherichia coli O157:H7 # 1 108 1 108 108 166 100.0 9e-42 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD >gi|223713517|gb|ACDM01000081.1| GENE 4 4413 - 4934 422 173 aa, chain - ## HITS:1 COG:yjjX KEGG:ns NR:ns ## COG: yjjX COG1986 # Protein_GI_number: 16132211 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 170 4 173 173 325 100.0 3e-89 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVA NARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEAL GPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYQAL >gi|223713517|gb|ACDM01000081.1| GENE 5 4986 - 5633 650 215 aa, chain + ## HITS:1 COG:ECs5353 KEGG:ns NR:ns ## COG: ECs5353 COG0406 # Protein_GI_number: 15834607 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Escherichia coli O157:H7 # 1 215 1 215 215 406 100.0 1e-113 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAKELGITHIISSDLGRTR RTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIPEGE SMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSIS RVDYQESLWLASGWVVETAGDISHLDAPALDELQR >gi|223713517|gb|ACDM01000081.1| GENE 6 5630 - 6499 905 289 aa, chain - ## HITS:1 COG:ECs5354 KEGG:ns NR:ns ## COG: ECs5354 COG2207 # Protein_GI_number: 15834608 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 289 1 289 289 597 100.0 1e-171 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR >gi|223713517|gb|ACDM01000081.1| GENE 7 6710 - 7183 519 157 aa, chain + ## HITS:1 COG:ECs5355 KEGG:ns NR:ns ## COG: ECs5355 COG3045 # Protein_GI_number: 15834609 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 157 1 157 157 291 100.0 3e-79 MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEAFDDPDVKNVTCYVSRA KTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGEVVFKKRTSLVFKSLQVVR FYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ >gi|223713517|gb|ACDM01000081.1| GENE 8 7196 - 7885 628 229 aa, chain + ## HITS:1 COG:creB KEGG:ns NR:ns ## COG: creB COG0745 # Protein_GI_number: 16132215 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 229 1 229 229 449 99.0 1e-126 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDI SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLM DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL >gi|223713517|gb|ACDM01000081.1| GENE 9 7885 - 9309 1261 474 aa, chain + ## HITS:1 COG:creC KEGG:ns NR:ns ## COG: creC COG0642 # Protein_GI_number: 16132216 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 474 1 474 474 910 99.0 0 MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLIDTATLLAELARPDLLSG DPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDAQGKVLFDSANKAVGQDYSRW NDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRLIGVLSVGKPNAAMAPVIKRS ERRILWASAILLGIALVIGAGMVWWINRSIARLTRYADSVTDNKPVPLPDLGSSELRKLA QALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPPEVVARFTDNILTQ NARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAEKNITLHVTPTEVN VAAEPALLDQALGNLLDNAIDFTPESGRITLSAEVDQEHVTLKVLDTGSGIPDYALSRIF ERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLASLRLHRHFT >gi|223713517|gb|ACDM01000081.1| GENE 10 9367 - 10719 1085 450 aa, chain + ## HITS:1 COG:ECs5358 KEGG:ns NR:ns ## COG: ECs5358 COG4452 # Protein_GI_number: 15834612 # Func_class: V Defense mechanisms # Function: Inner membrane protein involved in colicin E2 resistance # Organism: Escherichia coli O157:H7 # 1 450 1 450 450 840 98.0 0 MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLI AIPVIELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLK ADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQG VHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNSEMTLTSNWPHPSFLGDFLPAKR EVSESGFQAQWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAI LLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIG ALMNGIYLQAVLKGWRNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFV TRNIDWYAFSLPKMKASKEVTTDDELRIWK >gi|223713517|gb|ACDM01000081.1| GENE 11 10778 - 11494 862 238 aa, chain - ## HITS:1 COG:ECs5359 KEGG:ns NR:ns ## COG: ECs5359 COG0745 # Protein_GI_number: 15834613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 238 1 238 238 470 100.0 1e-133 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED >gi|223713517|gb|ACDM01000081.1| GENE 12 12130 - 12816 500 228 aa, chain + ## HITS:1 COG:ECs5361 KEGG:ns NR:ns ## COG: ECs5361 COG0565 # Protein_GI_number: 15834615 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Escherichia coli O157:H7 # 1 228 1 228 228 422 98.0 1e-118 MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDVIDNIKV FPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLT NEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRER VMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKNITK >gi|223713517|gb|ACDM01000081.1| GENE 13 13176 - 15638 2263 820 aa, chain + ## HITS:1 COG:thrA_1 KEGG:ns NR:ns ## COG: thrA_1 COG0527 # Protein_GI_number: 16127996 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1 460 1 460 460 911 100.0 0 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL LEQLKRQQSWLKNKHIDLRVCGVANSKALLTSVHGLNLENWQEELAQAKEPFNLGRLIRL VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR RKFLYDTNVGAGLPVIENLQNLLNAGDELVKFSGILSGSLSYIFGKLDEGMSFSEATTLA REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV >gi|223713517|gb|ACDM01000081.1| GENE 14 15640 - 16572 755 310 aa, chain + ## HITS:1 COG:ECs0003 KEGG:ns NR:ns ## COG: ECs0003 COG0083 # Protein_GI_number: 15829257 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Escherichia coli O157:H7 # 1 310 1 310 310 638 99.0 0 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEP RENIVYQCWERFCQEQGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP GFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRL DTAGARVLEN >gi|223713517|gb|ACDM01000081.1| GENE 15 16573 - 17859 1453 428 aa, chain + ## HITS:1 COG:ECs0004 KEGG:ns NR:ns ## COG: ECs0004 COG0498 # Protein_GI_number: 15829258 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Escherichia coli O157:H7 # 1 428 1 428 428 842 99.0 0 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV AIDGDFDACQTLVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQEARNQ LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL RKLMMNHQ >gi|223713517|gb|ACDM01000081.1| GENE 16 18073 - 18369 154 98 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_0005 NR:ns ## KEGG: ECUMN_0005 # Name: yaaX # Def: conserved hypothetical protein; putative exported protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 84 1 84 98 134 98.0 7e-31 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQH YEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR >gi|223713517|gb|ACDM01000081.1| GENE 17 18523 - 19299 893 258 aa, chain - ## HITS:1 COG:yaaA KEGG:ns NR:ns ## COG: yaaA COG3022 # Protein_GI_number: 16128000 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 258 1 258 258 510 100.0 1e-145 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN AARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF DEDSSSNGELVFKRYEQR >gi|223713517|gb|ACDM01000081.1| GENE 18 19369 - 20799 812 476 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 6 447 8 446 456 317 40 5e-86 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV TGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFES AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQM IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE >gi|223713517|gb|ACDM01000081.1| GENE 19 21078 - 22031 1300 317 aa, chain + ## HITS:1 COG:ECs0008 KEGG:ns NR:ns ## COG: ECs0008 COG0176 # Protein_GI_number: 15829262 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli O157:H7 # 1 317 1 317 317 609 100.0 1e-174 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR KFAIDQEKLEKMIGDLL >gi|223713517|gb|ACDM01000081.1| GENE 20 22146 - 22733 692 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 6 191 2 191 194 271 73 4e-72 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV VAAFRPKSARRDVSE >gi|223713517|gb|ACDM01000081.1| GENE 21 22768 - 23334 754 188 aa, chain - ## HITS:1 COG:ECs0010 KEGG:ns NR:ns ## COG: ECs0010 COG1584 # Protein_GI_number: 15829264 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 299 100.0 2e-81 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKK GNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKG ARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRT VLPIGESH >gi|223713517|gb|ACDM01000081.1| GENE 22 23483 - 24196 567 237 aa, chain - ## HITS:1 COG:yaaW KEGG:ns NR:ns ## COG: yaaW COG4735 # Protein_GI_number: 16128005 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 237 1 237 237 394 99.0 1e-110 MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQ FLRNTWKKMDEEHKQEFLHAVDTRVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTH AAMSVLEHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQV >gi|223713517|gb|ACDM01000081.1| GENE 23 24222 - 24626 375 134 aa, chain - ## HITS:1 COG:no KEGG:JW0012 NR:ns ## KEGG: JW0012 # Name: yaaI # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 134 1 134 134 245 100.0 3e-64 MKSVFTISASLAISLMLCCTAQANDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSAD HGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTV NSSDMATLKIIGDD >gi|223713517|gb|ACDM01000081.1| GENE 24 25003 - 26919 2335 638 aa, chain + ## HITS:1 COG:ECs0014 KEGG:ns NR:ns ## COG: ECs0014 COG0443 # Protein_GI_number: 15829268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Escherichia coli O157:H7 # 1 638 1 638 638 1106 100.0 0 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME IAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK >gi|223713517|gb|ACDM01000081.1| GENE 25 27008 - 28138 1199 376 aa, chain + ## HITS:1 COG:dnaJ KEGG:ns NR:ns ## COG: dnaJ COG0484 # Protein_GI_number: 16128009 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Escherichia coli K12 # 1 376 1 376 376 698 99.0 0 MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS QKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYN MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAP AGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNEKQKQLLQELQESFGGPTGEHNSPRS KSFFDGVKKFFDDLTR Prediction of potential genes in microbial genomes Time: Mon May 16 19:23:26 2011 Seq name: gi|223713516|gb|ACDM01000082.1| Escherichia sp. 4_1_40B cont1.82, whole genome shotgun sequence Length of sequence - 3369 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 21 - 173 139 ## ECO103_0016 regulatory protein MokC for HokC + Prom 669 - 728 3.9 2 2 Op 1 5/0.000 + CDS 759 - 1925 1260 ## COG3004 Na+/H+ antiporter + Term 1941 - 1972 2.4 3 2 Op 2 . + CDS 1991 - 2890 793 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|223713516|gb|ACDM01000082.1| GENE 1 21 - 173 139 50 aa, chain - ## HITS:1 COG:no KEGG:ECO103_0016 NR:ns ## KEGG: ECO103_0016 # Name: mokC # Def: regulatory protein MokC for HokC # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 50 20 69 69 74 100.0 1e-12 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE >gi|223713516|gb|ACDM01000082.1| GENE 2 759 - 1925 1260 388 aa, chain + ## HITS:1 COG:ECs0017 KEGG:ns NR:ns ## COG: ECs0017 COG3004 # Protein_GI_number: 15829271 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Escherichia coli O157:H7 # 1 388 1 388 388 630 99.0 0 MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNML LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADP ITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLS MASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGK PLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINW AKLGILVGSISSAVIGYSWLRVRLRPSV >gi|223713516|gb|ACDM01000082.1| GENE 3 1991 - 2890 793 299 aa, chain + ## HITS:1 COG:nhaR KEGG:ns NR:ns ## COG: nhaR COG0583 # Protein_GI_number: 16128014 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 299 3 301 301 629 100.0 1e-180 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVEGE PIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPE KPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFV APTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAVR Prediction of potential genes in microbial genomes Time: Mon May 16 19:24:12 2011 Seq name: gi|223713515|gb|ACDM01000083.1| Escherichia sp. 4_1_40B cont1.83, whole genome shotgun sequence Length of sequence - 142652 bp Number of predicted genes - 124, with homology - 123 Number of transcription units - 55, operones - 29 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 179 - 231 1.3 1 1 Tu 1 . - CDS 251 - 514 422 ## PROTEIN SUPPORTED gi|15799705|ref|NP_285717.1| 30S ribosomal protein S20 - Prom 555 - 614 3.6 + Prom 361 - 420 5.2 2 2 Op 1 . + CDS 617 - 835 76 ## SDY_0046 hypothetical protein 3 2 Op 2 16/0.000 + CDS 843 - 1784 388 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 4 2 Op 3 16/0.000 + CDS 1827 - 4643 3126 ## COG0060 Isoleucyl-tRNA synthetase 5 2 Op 4 7/0.000 + CDS 4643 - 5137 566 ## COG0597 Lipoprotein signal peptidase + Prom 5159 - 5218 1.8 6 2 Op 5 7/0.000 + CDS 5262 - 5711 257 ## PROTEIN SUPPORTED gi|225086978|ref|YP_002658248.1| ribosomal protein S2 7 2 Op 6 3/0.727 + CDS 5713 - 6663 439 ## PROTEIN SUPPORTED gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P + Term 6692 - 6725 2.1 8 2 Op 7 3/0.727 + CDS 6729 - 7643 731 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 7660 - 7699 3.3 + Prom 7664 - 7723 3.9 9 3 Tu 1 . + CDS 7810 - 8631 923 ## COG0289 Dihydrodipicolinate reductase + Term 8681 - 8724 1.0 + Prom 8998 - 9057 5.5 10 4 Op 1 24/0.000 + CDS 9192 - 10235 1030 ## COG0505 Carbamoylphosphate synthase small subunit 11 4 Op 2 . + CDS 10253 - 13474 4323 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 13528 - 13559 2.5 12 5 Tu 1 . - CDS 13522 - 13701 125 ## ECUMN_0035 hypothetical protein - Prom 13870 - 13929 2.8 + Prom 13487 - 13546 6.4 13 6 Tu 1 . + CDS 13736 - 14131 314 ## SFV_0028 DNA-binding transcriptional activator CaiF + Term 14157 - 14212 1.9 14 7 Op 1 3/0.727 - CDS 14340 - 14930 440 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 15 7 Op 2 5/0.318 - CDS 14936 - 15829 1052 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 16 7 Op 3 4/0.591 - CDS 15830 - 17383 1215 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 17 7 Op 4 8/0.000 - CDS 17457 - 18674 1420 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase - Prom 18694 - 18753 2.2 18 7 Op 5 4/0.591 - CDS 18803 - 19945 1412 ## COG1960 Acyl-CoA dehydrogenases 19 7 Op 6 . - CDS 19976 - 21490 1662 ## COG1292 Choline-glycine betaine transporter - Prom 21514 - 21573 9.8 + Prom 21827 - 21886 3.9 20 8 Op 1 29/0.000 + CDS 21928 - 22734 864 ## COG2086 Electron transfer flavoprotein, beta subunit 21 8 Op 2 9/0.000 + CDS 22749 - 23690 898 ## COG2025 Electron transfer flavoprotein, alpha subunit 22 8 Op 3 12/0.000 + CDS 23741 - 25027 1425 ## COG0644 Dehydrogenases (flavoproteins) 23 8 Op 4 4/0.591 + CDS 25024 - 25311 344 ## COG2440 Ferredoxin-like protein 24 8 Op 5 4/0.591 + CDS 25370 - 26701 1474 ## COG0477 Permeases of the major facilitator superfamily + Prom 26770 - 26829 4.4 25 9 Op 1 7/0.000 + CDS 26866 - 27339 505 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 26 9 Op 2 4/0.591 + CDS 27332 - 29194 1031 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Prom 29303 - 29362 7.0 27 10 Tu 1 . + CDS 29386 - 29865 653 ## COG0262 Dihydrofolate reductase + Term 29890 - 29935 8.4 - Term 29679 - 29713 0.5 28 11 Op 1 8/0.000 - CDS 29943 - 30785 847 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 29 11 Op 2 8/0.000 - CDS 30792 - 31169 327 ## COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport 30 11 Op 3 12/0.000 - CDS 31172 - 31993 748 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 31 11 Op 4 13/0.000 - CDS 31990 - 32979 461 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 32 11 Op 5 16/0.000 - CDS 32979 - 34265 1402 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 33 11 Op 6 . - CDS 34318 - 36672 2119 ## COG1452 Organic solvent tolerance protein OstA - Prom 36817 - 36876 2.4 + Prom 36653 - 36712 3.3 34 12 Tu 1 . + CDS 36927 - 37742 799 ## COG1076 DnaJ-domain-containing proteins 1 + Term 37844 - 37888 6.1 35 13 Op 1 7/0.000 - CDS 37859 - 38518 218 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 36 13 Op 2 5/0.318 - CDS 38530 - 41436 3772 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 37 14 Op 1 3/0.727 - CDS 41601 - 43952 1810 ## COG0417 DNA polymerase elongation subunit (family B) - Term 43957 - 43997 5.8 38 14 Op 2 5/0.318 - CDS 44027 - 44722 636 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - Prom 44823 - 44882 2.6 - Term 44779 - 44815 -0.5 39 15 Op 1 7/0.000 - CDS 44891 - 46393 1598 ## COG2160 L-arabinose isomerase 40 15 Op 2 . - CDS 46404 - 48104 1711 ## COG1069 Ribulose kinase - Prom 48252 - 48311 4.2 + Prom 48211 - 48270 4.8 41 16 Op 1 4/0.591 + CDS 48392 - 49321 615 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 49325 - 49384 3.3 42 16 Op 2 . + CDS 49407 - 50171 901 ## COG0586 Uncharacterized membrane-associated protein 43 17 Op 1 11/0.000 - CDS 50285 - 50983 186 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 44 17 Op 2 14/0.000 - CDS 50967 - 52577 1644 ## COG1178 ABC-type Fe3+ transport system, permease component 45 17 Op 3 2/0.773 - CDS 52553 - 53536 1025 ## COG4143 ABC-type thiamine transport system, periplasmic component - Term 53543 - 53594 9.0 46 18 Tu 1 . - CDS 53700 - 55355 1356 ## COG4533 ABC-type uncharacterized transport system, periplasmic component + Prom 55363 - 55422 3.1 47 19 Op 1 . + CDS 55444 - 55575 147 ## ECIAI1_0070 hypothetical protein 48 19 Op 2 . + CDS 55553 - 55804 60 ## 49 19 Op 3 . + CDS 55695 - 56855 834 ## COG0477 Permeases of the major facilitator superfamily - Term 56865 - 56896 4.8 50 20 Op 1 30/0.000 - CDS 56904 - 57509 869 ## COG0066 3-isopropylmalate dehydratase small subunit 51 20 Op 2 10/0.000 - CDS 57520 - 58920 1671 ## COG0065 3-isopropylmalate dehydratase large subunit 52 20 Op 3 11/0.000 - CDS 58923 - 60014 1211 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 53 20 Op 4 . - CDS 60014 - 61585 1797 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 54 21 Tu 1 . + CDS 62407 - 63369 823 ## COG0583 Transcriptional regulator + Term 63372 - 63430 16.1 + Prom 63412 - 63471 9.5 55 22 Op 1 32/0.000 + CDS 63687 - 65411 1416 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 56 22 Op 2 3/0.727 + CDS 65414 - 65905 509 ## COG0440 Acetolactate synthase, small (regulatory) subunit + Term 65931 - 65963 1.5 + Prom 65997 - 66056 5.7 57 23 Tu 1 . + CDS 66085 - 67089 1112 ## COG1609 Transcriptional regulators + Prom 67587 - 67646 4.1 58 24 Op 1 29/0.000 + CDS 67691 - 68149 276 ## COG2001 Uncharacterized protein conserved in bacteria 59 24 Op 2 12/0.000 + CDS 68154 - 69092 1132 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 60 24 Op 3 12/0.000 + CDS 69089 - 69454 358 ## COG3116 Cell division protein 61 24 Op 4 26/0.000 + CDS 69470 - 71236 1630 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 62 24 Op 5 26/0.000 + CDS 71223 - 72710 1539 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 63 24 Op 6 28/0.000 + CDS 72707 - 74065 1318 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 64 24 Op 7 28/0.000 + CDS 74059 - 75141 1455 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 65 24 Op 8 25/0.000 + CDS 75144 - 76460 1436 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 66 24 Op 9 31/0.000 + CDS 76460 - 77704 1491 ## COG0772 Bacterial cell division membrane protein 67 24 Op 10 26/0.000 + CDS 77701 - 78768 980 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 68 24 Op 11 11/0.000 + CDS 78822 - 80297 1535 ## COG0773 UDP-N-acetylmuramate-alanine ligase 69 24 Op 12 18/0.000 + CDS 80290 - 81210 1029 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 70 24 Op 13 25/0.000 + CDS 81212 - 82042 688 ## COG1589 Cell division septal protein 71 24 Op 14 35/0.000 + CDS 82039 - 83301 1139 ## COG0849 Actin-like ATPase involved in cell division 72 24 Op 15 11/0.000 + CDS 83362 - 84513 1358 ## COG0206 Cell division GTPase + Prom 84524 - 84583 1.8 73 24 Op 16 . + CDS 84614 - 85531 778 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase + Term 85558 - 85615 2.1 + Prom 85579 - 85638 4.9 74 25 Op 1 . + CDS 85687 - 86274 299 ## G2583_0101 secretion monitor protein + Term 86305 - 86333 0.5 75 25 Op 2 8/0.000 + CDS 86336 - 89041 3666 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 89063 - 89093 3.0 76 25 Op 3 . + CDS 89101 - 89490 337 ## PROTEIN SUPPORTED gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 89638 - 89682 3.7 77 26 Op 1 7/0.000 - CDS 89706 - 89903 153 ## COG3024 Uncharacterized protein conserved in bacteria 78 26 Op 2 7/0.000 - CDS 89913 - 90656 821 ## COG4582 Uncharacterized protein conserved in bacteria 79 26 Op 3 . - CDS 90656 - 91276 603 ## COG0237 Dephospho-CoA kinase - Prom 91378 - 91437 4.8 + Prom 91234 - 91293 3.0 80 27 Tu 1 . + CDS 91501 - 92544 1054 ## COG0516 IMP dehydrogenase/GMP reductase + Term 92553 - 92590 7.7 81 28 Op 1 24/0.000 - CDS 92579 - 93781 946 ## COG1459 Type II secretory pathway, component PulF 82 28 Op 2 8/0.000 - CDS 93771 - 95156 755 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 83 28 Op 3 5/0.318 - CDS 95166 - 95606 463 ## COG4969 Tfp pilus assembly protein, major pilin PilA - Prom 95715 - 95774 3.6 84 29 Tu 1 . - CDS 95809 - 96702 460 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 - Prom 96723 - 96782 2.0 + Prom 96520 - 96579 2.0 85 30 Op 1 6/0.091 + CDS 96790 - 97341 496 ## COG3023 Negative regulator of beta-lactamase expression 86 30 Op 2 . + CDS 97338 - 98192 876 ## COG3725 Membrane protein required for beta-lactamase induction - Term 98185 - 98230 2.5 87 31 Tu 1 . - CDS 98235 - 99605 1629 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 99697 - 99756 5.2 + Prom 99876 - 99935 7.4 88 32 Tu 1 . + CDS 100149 - 100913 721 ## COG2186 Transcriptional regulators + Term 100918 - 100957 2.8 + Prom 100938 - 100997 1.7 89 33 Op 1 13/0.000 + CDS 101074 - 103737 3503 ## COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component 90 33 Op 2 30/0.000 + CDS 103752 - 105644 2173 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 105651 - 105684 5.2 + Prom 105715 - 105774 7.8 91 33 Op 3 . + CDS 105969 - 107393 682 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 107417 - 107472 5.0 - Term 107382 - 107428 3.7 92 34 Tu 1 . - CDS 107464 - 109317 612 ## JW0113 hypothetical protein - Prom 109531 - 109590 4.4 + Prom 109506 - 109565 7.7 93 35 Tu 1 . + CDS 109672 - 112269 3144 ## COG1049 Aconitase B + Term 112305 - 112342 6.1 + Prom 112287 - 112346 6.4 94 36 Tu 1 . + CDS 112445 - 112807 499 ## COG3112 Uncharacterized protein conserved in bacteria + Term 112963 - 113001 2.2 - Term 112799 - 112840 10.2 95 37 Op 1 9/0.000 - CDS 112845 - 113639 877 ## COG1586 S-adenosylmethionine decarboxylase 96 37 Op 2 . - CDS 113655 - 114521 882 ## COG0421 Spermidine synthase - Prom 114560 - 114619 4.8 - Term 114568 - 114601 3.8 97 38 Tu 1 . - CDS 114627 - 114974 358 ## ECSE_0122 hypothetical protein - Prom 115116 - 115175 2.0 + Prom 115042 - 115101 4.8 98 39 Tu 1 . + CDS 115140 - 116690 1709 ## COG2132 Putative multicopper oxidases - Term 116743 - 116780 2.2 99 40 Tu 1 . - CDS 116892 - 119282 2578 ## COG4993 Glucose dehydrogenase - Prom 119319 - 119378 3.7 + Prom 119290 - 119349 6.4 100 41 Tu 1 . + CDS 119488 - 120024 868 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Term 120033 - 120071 4.2 101 42 Tu 1 . - CDS 120065 - 120727 644 ## COG0288 Carbonic anhydrase - Prom 120823 - 120882 5.4 + Prom 120738 - 120797 4.2 102 43 Op 1 45/0.000 + CDS 120836 - 121762 946 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 103 43 Op 2 3/0.727 + CDS 121759 - 122529 885 ## COG0842 ABC-type multidrug transport system, permease component + Term 122537 - 122576 6.6 104 44 Op 1 4/0.591 + CDS 122634 - 123074 313 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 123090 - 123125 1.1 105 44 Op 2 . + CDS 123138 - 124367 862 ## COG0726 Predicted xylanase/chitin deacetylase + Term 124381 - 124418 2.1 106 45 Tu 1 . - CDS 124371 - 124751 434 ## COG0853 Aspartate 1-decarboxylase - Prom 124811 - 124870 2.6 107 46 Tu 1 . + CDS 124701 - 124913 97 ## ECH74115_0140 hypothetical protein 108 47 Tu 1 . + CDS 125025 - 125927 683 ## COG5464 Uncharacterized conserved protein + Term 125929 - 125973 2.1 - Term 125954 - 125996 10.2 109 48 Op 1 19/0.000 - CDS 126001 - 126852 1007 ## COG0414 Panthothenate synthetase 110 48 Op 2 3/0.727 - CDS 126864 - 127538 884 ## COG0413 Ketopantoate hydroxymethyltransferase - Prom 127685 - 127744 4.2 111 49 Tu 1 . - CDS 127771 - 128697 364 ## COG3539 P pilus assembly protein, pilin FimA 112 50 Op 1 . - CDS 129059 - 129655 139 ## JW0132 predicted fimbrial-like adhesin protein 113 50 Op 2 . - CDS 129682 - 130284 428 ## JW0133 predicted fimbrial-like adhesin protein 114 50 Op 3 6/0.091 - CDS 130299 - 130682 275 ## COG3539 P pilus assembly protein, pilin FimA - Prom 130740 - 130799 3.2 115 51 Op 1 10/0.000 - CDS 130885 - 133482 1492 ## COG3188 P pilus assembly protein, porin PapC 116 51 Op 2 7/0.000 - CDS 133517 - 134209 454 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 134246 - 134305 7.2 - Term 134274 - 134321 5.4 117 51 Op 3 3/0.727 - CDS 134355 - 134939 465 ## COG3539 P pilus assembly protein, pilin FimA - Prom 135142 - 135201 5.4 - Term 135090 - 135135 1.0 118 52 Op 1 7/0.000 - CDS 135309 - 135788 208 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 119 52 Op 2 1/0.909 - CDS 135785 - 137149 1377 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 137174 - 137233 3.5 120 53 Op 1 3/0.727 - CDS 137242 - 138138 519 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Term 138144 - 138176 3.0 121 53 Op 2 6/0.091 - CDS 138205 - 138660 677 ## COG1734 DnaK suppressor protein - Prom 138714 - 138773 2.3 - Term 138738 - 138773 -0.1 122 54 Op 1 3/0.727 - CDS 138838 - 139542 367 ## COG1489 DNA-binding protein, stimulates sugar fermentation 123 54 Op 2 . - CDS 139557 - 140087 470 ## COG1514 2'-5' RNA ligase - Prom 140109 - 140168 4.3 124 55 Tu 1 . + CDS 140116 - 142590 2155 ## COG1643 HrpA-like helicases Predicted protein(s) >gi|223713515|gb|ACDM01000083.1| GENE 1 251 - 514 422 87 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15799705|ref|NP_285717.1| 30S ribosomal protein S20 [Escherichia coli O157:H7 EDL933] # 1 87 1 87 87 167 98 3e-40 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR QAAKGLIHKNKAARHKANLTAQINKLA >gi|223713515|gb|ACDM01000083.1| GENE 2 617 - 835 76 72 aa, chain + ## HITS:1 COG:no KEGG:SDY_0046 NR:ns ## KEGG: SDY_0046 # Name: not_defined # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 72 1 72 72 128 100.0 7e-29 MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICAMAMKSHFFLISVLNRRLTLT AVQGILGRFSLF >gi|223713515|gb|ACDM01000083.1| GENE 3 843 - 1784 388 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 307 1 312 317 154 33 3e-36 MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPL ELFATDKTPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKF LAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLAL AESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGV ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIAHDE LTAREFFGLTKPA >gi|223713515|gb|ACDM01000083.1| GENE 4 1827 - 4643 3126 938 aa, chain + ## HITS:1 COG:ileS KEGG:ns NR:ns ## COG: ileS COG0060 # Protein_GI_number: 16128020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 938 1 938 938 1954 99.0 0 MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA NGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAA EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFGVSNVNGPISLVIW TTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAE LELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPD GTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK DTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGST HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR FLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCS VEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPG EREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV TLYAEPELSAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEK CPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA >gi|223713515|gb|ACDM01000083.1| GENE 5 4643 - 5137 566 164 aa, chain + ## HITS:1 COG:lspA KEGG:ns NR:ns ## COG: lspA COG0597 # Protein_GI_number: 16128021 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Escherichia coli K12 # 1 164 1 164 164 305 99.0 2e-83 MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSF LADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF VVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ >gi|223713515|gb|ACDM01000083.1| GENE 6 5262 - 5711 257 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225086978|ref|YP_002658248.1| ribosomal protein S2 [gamma proteobacterium NOR5-3] # 1 144 1 143 148 103 36 5e-21 MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK TTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS ITVDFNHPLAGQTVHFDIEVLEIDPALEA >gi|223713515|gb|ACDM01000083.1| GENE 7 5713 - 6663 439 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Veillonella parvula DSM 2008] # 1 298 1 287 632 173 34 4e-42 MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI SEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG HAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDA LRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGK RAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENI VFEVPKELRVDIREVD >gi|223713515|gb|ACDM01000083.1| GENE 8 6729 - 7643 731 304 aa, chain + ## HITS:1 COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1 303 1 303 304 575 98.0 1e-164 MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEI PLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPIGIPAFLAIRDALMRAPEPVTL VAIGPLTNIALLLSQCPECKPYIRRLVIMGGSSGRGNCTPNAEFNIAADPEAAACVFRSG IEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAW LVRPDLFTLKPCFVAVETQGEFTSGTTMVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL ALAP >gi|223713515|gb|ACDM01000083.1| GENE 9 7810 - 8631 923 273 aa, chain + ## HITS:1 COG:dapB KEGG:ns NR:ns ## COG: dapB COG0289 # Protein_GI_number: 16128025 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Escherichia coli K12 # 1 273 1 273 273 468 99.0 1e-132 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV TVQSSLDAVKEDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAH ALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR MTFANGAVRSALWLSGKESGLFDMRDVLDLNSL >gi|223713515|gb|ACDM01000083.1| GENE 10 9192 - 10235 1030 347 aa, chain + ## HITS:1 COG:ECs0035 KEGG:ns NR:ns ## COG: ECs0035 COG0505 # Protein_GI_number: 15829289 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Escherichia coli O157:H7 # 1 347 36 382 382 715 99.0 0 MTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNT EDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNG MDLAKEVTTAEAYSWTQGSWTLTGGMPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCR LTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLL ALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDG TLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK >gi|223713515|gb|ACDM01000083.1| GENE 11 10253 - 13474 4323 1073 aa, chain + ## HITS:1 COG:ECs0036 KEGG:ns NR:ns ## COG: ECs0036 COG0458 # Protein_GI_number: 15829290 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Escherichia coli O157:H7 # 1 1073 1 1073 1073 2125 100.0 0 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA LTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG ITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP VIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK >gi|223713515|gb|ACDM01000083.1| GENE 12 13522 - 13701 125 59 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_0035 NR:ns ## KEGG: ECUMN_0035 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 51 1 51 72 99 100.0 2e-20 MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKTVLIREPY >gi|223713515|gb|ACDM01000083.1| GENE 13 13736 - 14131 314 131 aa, chain + ## HITS:1 COG:no KEGG:SFV_0028 NR:ns ## KEGG: SFV_0028 # Name: caiF # Def: DNA-binding transcriptional activator CaiF # Organism: S.flexneri_8401 # Pathway: not_defined # 1 131 36 166 166 249 100.0 3e-65 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK WQMMLSKSMRR >gi|223713515|gb|ACDM01000083.1| GENE 14 14340 - 14930 440 196 aa, chain - ## HITS:1 COG:ECs0038 KEGG:ns NR:ns ## COG: ECs0038 COG0663 # Protein_GI_number: 15829292 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli O157:H7 # 1 196 8 203 203 389 98.0 1e-108 MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQD GCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSF VKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQME ENRPRLQGTTDVTPKR >gi|223713515|gb|ACDM01000083.1| GENE 15 14936 - 15829 1052 297 aa, chain - ## HITS:1 COG:caiD KEGG:ns NR:ns ## COG: caiD COG1024 # Protein_GI_number: 16128030 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli K12 # 1 297 1 297 297 582 98.0 1e-166 MKQQGTTLPANNHAIKQYAFFAGMLSSLKKQKWRKGMSESLHLTRNGSILEITLDRPKAN AIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF AGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVL RLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAI AALKEIFRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR >gi|223713515|gb|ACDM01000083.1| GENE 16 15830 - 17383 1215 517 aa, chain - ## HITS:1 COG:ECs0040 KEGG:ns NR:ns ## COG: ECs0040 COG0318 # Protein_GI_number: 15829294 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli O157:H7 # 1 517 6 522 522 1085 98.0 0 MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIR KGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFY PMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILF TSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG ATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLS EQEKDAFCERFGVRLLTSYGMTETIVGIIGNRPGDKRRWPSIGRAGFCYEAEIRDDHNRP LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRR CNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEF FRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK >gi|223713515|gb|ACDM01000083.1| GENE 17 17457 - 18674 1420 405 aa, chain - ## HITS:1 COG:ECs0041 KEGG:ns NR:ns ## COG: ECs0041 COG1804 # Protein_GI_number: 15829295 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli O157:H7 # 1 405 1 405 405 832 99.0 0 MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAA LAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYK CADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWL AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF KNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED >gi|223713515|gb|ACDM01000083.1| GENE 18 18803 - 19945 1412 380 aa, chain - ## HITS:1 COG:ECs0042 KEGG:ns NR:ns ## COG: ECs0042 COG1960 # Protein_GI_number: 15829296 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1 380 1 380 380 788 100.0 0 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMW NSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY TEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE RFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEA AWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVS GGSDEMQILTLGRAVLKQYR >gi|223713515|gb|ACDM01000083.1| GENE 19 19976 - 21490 1662 504 aa, chain - ## HITS:1 COG:caiT KEGG:ns NR:ns ## COG: caiT COG1292 # Protein_GI_number: 16128034 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli K12 # 1 504 1 504 504 934 99.0 0 MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV VMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP FGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVG EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI ILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRM LFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTW ILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATV TLVNACSYTLAMSTCRDVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG CPLFFVNIMVTLSFIKDAKQNWKD >gi|223713515|gb|ACDM01000083.1| GENE 20 21928 - 22734 864 268 aa, chain + ## HITS:1 COG:ECs0044 KEGG:ns NR:ns ## COG: ECs0044 COG2086 # Protein_GI_number: 15829298 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli O157:H7 # 1 268 1 268 268 448 100.0 1e-126 MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQL KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAA QKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETE TLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPK QRERQRIVIEGDGEEQIAAFAENLRKVI >gi|223713515|gb|ACDM01000083.1| GENE 21 22749 - 23690 898 313 aa, chain + ## HITS:1 COG:fixB KEGG:ns NR:ns ## COG: fixB COG2025 # Protein_GI_number: 16128036 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1 313 1 313 313 602 100.0 1e-172 MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPD DRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGK ATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRT ATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH ERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDA VKILPALTAALAR >gi|223713515|gb|ACDM01000083.1| GENE 22 23741 - 25027 1425 428 aa, chain + ## HITS:1 COG:fixC KEGG:ns NR:ns ## COG: fixC COG0644 # Protein_GI_number: 16128037 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 428 1 428 428 813 99.0 0 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP GFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE AGVQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTD VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDM RMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKD GMKGVTVL >gi|223713515|gb|ACDM01000083.1| GENE 23 25024 - 25311 344 95 aa, chain + ## HITS:1 COG:ECs0047 KEGG:ns NR:ns ## COG: ECs0047 COG2440 # Protein_GI_number: 15829301 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli O157:H7 # 1 95 1 95 95 197 98.0 3e-51 MTSPVNVDVKLGVNKFNVDEGHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY AGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG >gi|223713515|gb|ACDM01000083.1| GENE 24 25370 - 26701 1474 443 aa, chain + ## HITS:1 COG:yaaU KEGG:ns NR:ns ## COG: yaaU COG0477 # Protein_GI_number: 16128039 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 443 1 443 443 834 100.0 0 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGA GTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVI GADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAA IPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRR HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPM LWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPN ELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAF APETRGMSLAQTSNMTIRGQRMG >gi|223713515|gb|ACDM01000083.1| GENE 25 26866 - 27339 505 157 aa, chain + ## HITS:1 COG:yabF KEGG:ns NR:ns ## COG: yabF COG2249 # Protein_GI_number: 16128040 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli K12 # 1 157 20 176 176 305 98.0 2e-83 MLEQARTLEGVEIRSLYQLYPDFNIDIAAEHEALSRADLIVWQHPMQWYSIPPLLKLWID KVLSHGWAYGHGGKALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNW LPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG >gi|223713515|gb|ACDM01000083.1| GENE 26 27332 - 29194 1031 620 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 6 586 9 612 618 401 38 1e-111 MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE IGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGM TLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGA FALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLS MAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILL LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGTAQMANVLEPEWAKSL TLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLS SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL TEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEA RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG TEEGKHTGNMADEPETKPSS >gi|223713515|gb|ACDM01000083.1| GENE 27 29386 - 29865 653 159 aa, chain + ## HITS:1 COG:folA KEGG:ns NR:ns ## COG: folA COG0262 # Protein_GI_number: 16128042 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Escherichia coli K12 # 1 159 1 159 159 332 100.0 1e-91 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNI ILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR >gi|223713515|gb|ACDM01000083.1| GENE 28 29943 - 30785 847 280 aa, chain - ## HITS:1 COG:apaH KEGG:ns NR:ns ## COG: apaH COG0639 # Protein_GI_number: 16128043 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Escherichia coli K12 # 1 280 1 280 280 587 100.0 1e-167 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH AGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAF TRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGI YALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS >gi|223713515|gb|ACDM01000083.1| GENE 29 30792 - 31169 327 125 aa, chain - ## HITS:1 COG:ECs0055 KEGG:ns NR:ns ## COG: ECs0055 COG2967 # Protein_GI_number: 15829309 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein affecting Mg2+/Co2+ transport # Organism: Escherichia coli O157:H7 # 1 125 1 125 125 241 100.0 2e-64 MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRET EVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAV PTLIH >gi|223713515|gb|ACDM01000083.1| GENE 30 31172 - 31993 748 273 aa, chain - ## HITS:1 COG:ksgA KEGG:ns NR:ns ## COG: ksgA COG0030 # Protein_GI_number: 16128045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Escherichia coli K12 # 1 273 1 273 273 538 100.0 1e-153 MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG MGIDPAMRAENISVAQYCQMANYLAENAPLQES >gi|223713515|gb|ACDM01000083.1| GENE 31 31990 - 32979 461 329 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 7 324 9 326 346 182 34 1e-44 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYS PNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGP VHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPAL LHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKL NGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA LELAGRGEADVGSFITALNLAIKMIVNTQ >gi|223713515|gb|ACDM01000083.1| GENE 32 32979 - 34265 1402 428 aa, chain - ## HITS:1 COG:ECs0058 KEGG:ns NR:ns ## COG: ECs0058 COG0760 # Protein_GI_number: 15829312 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli O157:H7 # 1 428 1 428 428 773 100.0 0 MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL PDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAY DGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHIL IPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTD EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL NKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRAS AYVKILSN >gi|223713515|gb|ACDM01000083.1| GENE 33 34318 - 36672 2119 784 aa, chain - ## HITS:1 COG:imp KEGG:ns NR:ns ## COG: imp COG1452 # Protein_GI_number: 16128048 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Escherichia coli K12 # 1 784 1 784 784 1553 99.0 0 MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAK GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILK GPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTW SVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNY FEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYED EHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFS VGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNT RDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNR VMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGL FRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWEND DKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYAS PEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQ YSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPY QNTL >gi|223713515|gb|ACDM01000083.1| GENE 34 36927 - 37742 799 271 aa, chain + ## HITS:1 COG:STM0094 KEGG:ns NR:ns ## COG: STM0094 COG1076 # Protein_GI_number: 16763484 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Salmonella typhimurium LT2 # 1 271 1 270 270 504 95.0 1e-143 MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFE VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQ FGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK >gi|223713515|gb|ACDM01000083.1| GENE 35 37859 - 38518 218 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 16 218 83 281 285 88 31 2e-16 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF >gi|223713515|gb|ACDM01000083.1| GENE 36 38530 - 41436 3772 968 aa, chain - ## HITS:1 COG:ECs0063 KEGG:ns NR:ns ## COG: ECs0063 COG0553 # Protein_GI_number: 15829317 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Escherichia coli O157:H7 # 1 968 1 968 968 1915 100.0 0 MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL RLIVVTHQ >gi|223713515|gb|ACDM01000083.1| GENE 37 41601 - 43952 1810 783 aa, chain - ## HITS:1 COG:polB KEGG:ns NR:ns ## COG: polB COG0417 # Protein_GI_number: 16128054 # Func_class: L Replication, recombination and repair # Function: DNA polymerase elongation subunit (family B) # Organism: Escherichia coli K12 # 1 783 1 783 783 1624 99.0 0 MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGE QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI TSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM LGPENGDASSLDFELEYVASRPLLLEKLNAWFANHDPDVIIGWNVVQFDLRMLQKHAERY RLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY KSLYPSIIRTFLIDPVGLVEGMAQPDPEPSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYD VIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCR FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE PYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL GLF >gi|223713515|gb|ACDM01000083.1| GENE 38 44027 - 44722 636 231 aa, chain - ## HITS:1 COG:araD KEGG:ns NR:ns ## COG: araD COG0235 # Protein_GI_number: 16128055 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 231 1 231 231 474 100.0 1e-134 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVS IETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ >gi|223713515|gb|ACDM01000083.1| GENE 39 44891 - 46393 1598 500 aa, chain - ## HITS:1 COG:araA KEGG:ns NR:ns ## COG: araA COG2160 # Protein_GI_number: 16128056 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Escherichia coli K12 # 1 500 1 500 500 1058 99.0 0 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT RLPAFKDALRWNEVYYGFRR >gi|223713515|gb|ACDM01000083.1| GENE 40 46404 - 48104 1711 566 aa, chain - ## HITS:1 COG:ECs0067 KEGG:ns NR:ns ## COG: ECs0067 COG1069 # Protein_GI_number: 15829321 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Escherichia coli O157:H7 # 1 566 1 566 566 1100 99.0 0 MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH PELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL QIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQ QWAMSAEQHYLPTSAPAQAAQAVATL >gi|223713515|gb|ACDM01000083.1| GENE 41 48392 - 49321 615 309 aa, chain + ## HITS:1 COG:ECs0068 KEGG:ns NR:ns ## COG: ECs0068 COG2207 # Protein_GI_number: 15829322 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 18 309 1 292 292 622 100.0 1e-178 MQYGQLVSSLNGGSMKSMAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMK GYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAY WHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRR MEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV LSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEK VNDVAVKLS >gi|223713515|gb|ACDM01000083.1| GENE 42 49407 - 50171 901 254 aa, chain + ## HITS:1 COG:ECs0069 KEGG:ns NR:ns ## COG: ECs0069 COG0586 # Protein_GI_number: 15829323 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli O157:H7 # 1 254 1 254 254 446 99.0 1e-125 MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAW LAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG PTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWL LLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPL MPVYIDILRKVVGV >gi|223713515|gb|ACDM01000083.1| GENE 43 50285 - 50983 186 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 22 227 154 361 398 76 30 8e-13 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDS VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGID NLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK MTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELLSGKASASAILGITG >gi|223713515|gb|ACDM01000083.1| GENE 44 50967 - 52577 1644 536 aa, chain - ## HITS:1 COG:ECs0071 KEGG:ns NR:ns ## COG: ECs0071 COG1178 # Protein_GI_number: 15829325 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Escherichia coli O157:H7 # 1 536 1 536 536 888 98.0 0 MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSF WQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGW LASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRG WHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDP ARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALL LLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELR ARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTTGLPQSADGIVIFTNALMAIPYA LKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVV ALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKIPGRNVKTD >gi|223713515|gb|ACDM01000083.1| GENE 45 52553 - 53536 1025 327 aa, chain - ## HITS:1 COG:tbpA KEGG:ns NR:ns ## COG: tbpA COG4143 # Protein_GI_number: 16128062 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type thiamine transport system, periplasmic component # Organism: Escherichia coli K12 # 13 327 13 327 327 614 98.0 1e-176 MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDG VSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPF DYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAP QAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGH YLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVAKVTLPAGFEQLTKPA TTLEFTPAEVAAQRQAWISEWQRAVSR >gi|223713515|gb|ACDM01000083.1| GENE 46 53700 - 55355 1356 551 aa, chain - ## HITS:1 COG:ECs0074 KEGG:ns NR:ns ## COG: ECs0074 COG4533 # Protein_GI_number: 15829328 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 551 1 551 552 1108 99.0 0 MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHCGANKQVRDWVSYVL SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAG IMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHC IPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFD FKSAWFAPPDP >gi|223713515|gb|ACDM01000083.1| GENE 47 55444 - 55575 147 43 aa, chain + ## HITS:1 COG:no KEGG:ECIAI1_0070 NR:ns ## KEGG: ECIAI1_0070 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 43 57 99 99 84 97.0 1e-15 MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES >gi|223713515|gb|ACDM01000083.1| GENE 48 55553 - 55804 60 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAILKVDLPASCVTEYWCKITRQQIIPAGFFYSRRAKKGTYDLDNDDGSPYERCLRGIY AGRFYDGGGRGATGSYIELISES >gi|223713515|gb|ACDM01000083.1| GENE 49 55695 - 56855 834 386 aa, chain + ## HITS:1 COG:setA KEGG:ns NR:ns ## COG: setA COG0477 # Protein_GI_number: 16128064 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 386 7 392 392 656 99.0 0 MARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVS LWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFA LAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLV LIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSEL GLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMA LMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW GHFAVYWVIAVISVVALFLTAKVKDV >gi|223713515|gb|ACDM01000083.1| GENE 50 56904 - 57509 869 201 aa, chain - ## HITS:1 COG:leuD KEGG:ns NR:ns ## COG: leuD COG0066 # Protein_GI_number: 16128065 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Escherichia coli K12 # 1 201 1 201 201 413 100.0 1e-115 MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPD FVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL PVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIG LTLQHDDAIAAYEAKQPAFMN >gi|223713515|gb|ACDM01000083.1| GENE 51 57520 - 58920 1671 466 aa, chain - ## HITS:1 COG:leuC KEGG:ns NR:ns ## COG: leuC COG0065 # Protein_GI_number: 16128066 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Escherichia coli K12 # 1 466 1 466 466 926 99.0 0 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV NDNIPDPTSFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNIK >gi|223713515|gb|ACDM01000083.1| GENE 52 58923 - 60014 1211 363 aa, chain - ## HITS:1 COG:leuB KEGG:ns NR:ns ## COG: leuB COG0473 # Protein_GI_number: 16128067 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1 363 2 364 364 742 100.0 0 MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPA TVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAF CPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAF ESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQF DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIA QILSLALLLRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYVA EGV >gi|223713515|gb|ACDM01000083.1| GENE 53 60014 - 61585 1797 523 aa, chain - ## HITS:1 COG:ECs0078 KEGG:ns NR:ns ## COG: ECs0078 COG0119 # Protein_GI_number: 15829332 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli O157:H7 # 1 523 1 523 523 1013 99.0 0 MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEF AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA EAANGNGPVDAVYQAINRITDYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL ATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQHNENNKETV >gi|223713515|gb|ACDM01000083.1| GENE 54 62407 - 63369 823 320 aa, chain + ## HITS:1 COG:leuO KEGG:ns NR:ns ## COG: leuO COG0583 # Protein_GI_number: 16128070 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 320 54 373 373 628 99.0 1e-180 MTVELSMPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVS NAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVF HLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP EFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQA SIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSWHEA AGRDKGHQWMEEQLVSICKR >gi|223713515|gb|ACDM01000083.1| GENE 55 63687 - 65411 1416 574 aa, chain + ## HITS:1 COG:ilvI KEGG:ns NR:ns ## COG: ilvI COG0028 # Protein_GI_number: 16132273 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1 574 1 574 574 1167 99.0 0 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVSS LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT >gi|223713515|gb|ACDM01000083.1| GENE 56 65414 - 65905 509 163 aa, chain + ## HITS:1 COG:ECs0082 KEGG:ns NR:ns ## COG: ECs0082 COG0440 # Protein_GI_number: 15829336 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1 163 1 163 163 280 98.0 1e-75 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY TVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDKIMR >gi|223713515|gb|ACDM01000083.1| GENE 57 66085 - 67089 1112 334 aa, chain + ## HITS:1 COG:ECs0084 KEGG:ns NR:ns ## COG: ECs0084 COG1609 # Protein_GI_number: 15829338 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 655 100.0 0 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS >gi|223713515|gb|ACDM01000083.1| GENE 58 67691 - 68149 276 152 aa, chain + ## HITS:1 COG:ECs0085 KEGG:ns NR:ns ## COG: ECs0085 COG2001 # Protein_GI_number: 15829339 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 152 1 152 152 296 100.0 7e-81 MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPCLLLYPLPEWEIIEQKL SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW DETTWHQQVKEDIDAEQLATGDLSERLQDLSL >gi|223713515|gb|ACDM01000083.1| GENE 59 68154 - 69092 1132 312 aa, chain + ## HITS:1 COG:ECs0086 KEGG:ns NR:ns ## COG: ECs0086 COG0275 # Protein_GI_number: 15829340 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Escherichia coli O157:H7 # 1 312 2 313 313 593 100.0 1e-169 MENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI AVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRD GPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTK ELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRAR SSVLRIAERTNA >gi|223713515|gb|ACDM01000083.1| GENE 60 69089 - 69454 358 121 aa, chain + ## HITS:1 COG:ECs0087 KEGG:ns NR:ns ## COG: ECs0087 COG3116 # Protein_GI_number: 15829341 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli O157:H7 # 1 121 1 121 121 224 100.0 4e-59 MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFICIILTAVTVVTTAHHT RLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ K >gi|223713515|gb|ACDM01000083.1| GENE 61 69470 - 71236 1630 588 aa, chain + ## HITS:1 COG:ECs0088 KEGG:ns NR:ns ## COG: ECs0088 COG0768 # Protein_GI_number: 15829342 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Escherichia coli O157:H7 # 1 588 1 588 588 1162 100.0 0 MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS >gi|223713515|gb|ACDM01000083.1| GENE 62 71223 - 72710 1539 495 aa, chain + ## HITS:1 COG:murE KEGG:ns NR:ns ## COG: murE COG0769 # Protein_GI_number: 16128078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Escherichia coli K12 # 1 495 1 495 495 937 99.0 0 MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE PRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD YSDRVTVARLLGVIA >gi|223713515|gb|ACDM01000083.1| GENE 63 72707 - 74065 1318 452 aa, chain + ## HITS:1 COG:murF KEGG:ns NR:ns ## COG: murF COG0770 # Protein_GI_number: 16128079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Escherichia coli K12 # 1 452 1 452 452 816 100.0 0 MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAG GAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAA ILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAAL VNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFS PNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATL DAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGD MAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLL IAEQQVITILVKGSRSAAMEEVVRALQENGTC >gi|223713515|gb|ACDM01000083.1| GENE 64 74059 - 75141 1455 360 aa, chain + ## HITS:1 COG:STM0125 KEGG:ns NR:ns ## COG: STM0125 COG0472 # Protein_GI_number: 16763515 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Salmonella typhimurium LT2 # 1 360 1 360 360 642 97.0 0 MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRND GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVVLVGYGVIGFVDDYRKV VRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQLVVPFFKDVMPQLGLFYILLA YFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELV IVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLLRQEFLLVIMGGVFVVE TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR >gi|223713515|gb|ACDM01000083.1| GENE 65 75144 - 76460 1436 438 aa, chain + ## HITS:1 COG:ECs0092 KEGG:ns NR:ns ## COG: ECs0092 COG0771 # Protein_GI_number: 15829346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Escherichia coli O157:H7 # 1 438 1 438 438 853 99.0 0 MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT TLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGL PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYL NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF KNFEQRGNEFARLAKELG >gi|223713515|gb|ACDM01000083.1| GENE 66 76460 - 77704 1491 414 aa, chain + ## HITS:1 COG:ECs0093 KEGG:ns NR:ns ## COG: ECs0093 COG0772 # Protein_GI_number: 15829347 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Escherichia coli O157:H7 # 1 414 1 414 414 735 100.0 0 MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGF IMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRLPMEFWQRYSATMLLGSII LLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLK PMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAE PYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIF AIIGEELGYVGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR >gi|223713515|gb|ACDM01000083.1| GENE 67 77701 - 78768 980 355 aa, chain + ## HITS:1 COG:murG KEGG:ns NR:ns ## COG: murG COG0707 # Protein_GI_number: 16128083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Escherichia coli K12 # 1 355 1 355 355 655 100.0 0 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFI RISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIP VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGRE GPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKV TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA >gi|223713515|gb|ACDM01000083.1| GENE 68 78822 - 80297 1535 491 aa, chain + ## HITS:1 COG:murC KEGG:ns NR:ns ## COG: murC COG0773 # Protein_GI_number: 16128084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Escherichia coli K12 # 1 491 1 491 491 908 100.0 0 MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQL MNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRH GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDA SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL PRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAA VAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGA DSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL KPQTPEEEQHD >gi|223713515|gb|ACDM01000083.1| GENE 69 80290 - 81210 1029 306 aa, chain + ## HITS:1 COG:ddlB KEGG:ns NR:ns ## COG: ddlB COG1181 # Protein_GI_number: 16128085 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli K12 # 1 306 1 306 306 581 100.0 1e-166 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR ILELAD >gi|223713515|gb|ACDM01000083.1| GENE 70 81212 - 82042 688 276 aa, chain + ## HITS:1 COG:ftsQ KEGG:ns NR:ns ## COG: ftsQ COG1589 # Protein_GI_number: 16128086 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Escherichia coli K12 # 1 265 1 265 276 490 100.0 1e-138 MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKL VLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELK IHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQM LAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKR ISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ >gi|223713515|gb|ACDM01000083.1| GENE 71 82039 - 83301 1139 420 aa, chain + ## HITS:1 COG:ECs0098 KEGG:ns NR:ns ## COG: ECs0098 COG0849 # Protein_GI_number: 15829352 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Escherichia coli O157:H7 # 1 420 1 420 420 818 100.0 0 MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL KVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR YTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA PLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF >gi|223713515|gb|ACDM01000083.1| GENE 72 83362 - 84513 1358 383 aa, chain + ## HITS:1 COG:ECs0099 KEGG:ns NR:ns ## COG: ECs0099 COG0206 # Protein_GI_number: 15829353 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Escherichia coli O157:H7 # 1 383 1 383 383 642 100.0 0 MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI GSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVA KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND NAPQTAKEPDYLDIPAFLRKQAD >gi|223713515|gb|ACDM01000083.1| GENE 73 84614 - 85531 778 305 aa, chain + ## HITS:1 COG:ECs0100 KEGG:ns NR:ns ## COG: ECs0100 COG0774 # Protein_GI_number: 15829354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 636 100.0 0 MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP SAVLA >gi|223713515|gb|ACDM01000083.1| GENE 74 85687 - 86274 299 195 aa, chain + ## HITS:1 COG:no KEGG:G2583_0101 NR:ns ## KEGG: G2583_0101 # Name: secM # Def: secretion monitor protein # Organism: E.coli_O55_H7 # Pathway: Protein export [PATH:eok03060]; Bacterial secretion system [PATH:eok03070] # 1 195 33 227 227 384 98.0 1e-106 MLWTAGFNDKICALNTFEYDRDGNNVSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALS NAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSF AMAPQTLPVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVW ISQAQGIRAGPQRLT >gi|223713515|gb|ACDM01000083.1| GENE 75 86336 - 89041 3666 901 aa, chain + ## HITS:1 COG:secA KEGG:ns NR:ns ## COG: secA COG0653 # Protein_GI_number: 16128091 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Escherichia coli K12 # 1 901 1 901 901 1721 100.0 0 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL EQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRL Q >gi|223713515|gb|ACDM01000083.1| GENE 76 89101 - 89490 337 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Haemophilus influenzae R2866] # 2 126 4 128 136 134 48 2e-30 MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI TPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANE PVIAKLKRL >gi|223713515|gb|ACDM01000083.1| GENE 77 89706 - 89903 153 65 aa, chain - ## HITS:1 COG:ECs0105 KEGG:ns NR:ns ## COG: ECs0105 COG3024 # Protein_GI_number: 15829359 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 65 1 65 65 117 100.0 7e-27 MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS EEPKQ >gi|223713515|gb|ACDM01000083.1| GENE 78 89913 - 90656 821 247 aa, chain - ## HITS:1 COG:yacF KEGG:ns NR:ns ## COG: yacF COG4582 # Protein_GI_number: 16128095 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 247 1 247 247 484 100.0 1e-137 MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVR TELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIAL VRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIASLNPLTQALTMVLDLIRQSAP FRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGHKSRFAIRFMPLDTENGQVPERL DFELACC >gi|223713515|gb|ACDM01000083.1| GENE 79 90656 - 91276 603 206 aa, chain - ## HITS:1 COG:ECs0107 KEGG:ns NR:ns ## COG: ECs0107 COG0237 # Protein_GI_number: 15829361 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 360 100.0 1e-100 MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA ADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSL YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPD AIASDVARLHAHYLQLASQFVSQEKP >gi|223713515|gb|ACDM01000083.1| GENE 80 91501 - 92544 1054 347 aa, chain + ## HITS:1 COG:guaC KEGG:ns NR:ns ## COG: guaC COG0516 # Protein_GI_number: 16128097 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Escherichia coli K12 # 1 347 1 347 347 697 100.0 0 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTF SMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILDLN PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGCTTPGDVAKAFGGGADFVM LGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGP VENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRIFNNL >gi|223713515|gb|ACDM01000083.1| GENE 81 92579 - 93781 946 400 aa, chain - ## HITS:1 COG:hofC KEGG:ns NR:ns ## COG: hofC COG1459 # Protein_GI_number: 16128099 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Escherichia coli K12 # 1 400 1 400 400 717 100.0 0 MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKS AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV FPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAM LHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTW LIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL TQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALAD NLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG >gi|223713515|gb|ACDM01000083.1| GENE 82 93771 - 95156 755 461 aa, chain - ## HITS:1 COG:hofB KEGG:ns NR:ns ## COG: hofB COG2804 # Protein_GI_number: 16128100 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli K12 # 1 461 1 461 461 898 100.0 0 MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQME GHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLH PLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKV VLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAE IAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR QQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVES LETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE >gi|223713515|gb|ACDM01000083.1| GENE 83 95166 - 95606 463 146 aa, chain - ## HITS:1 COG:ppdD KEGG:ns NR:ns ## COG: ppdD COG4969 # Protein_GI_number: 16128101 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, major pilin PilA # Organism: Escherichia coli K12 # 1 146 1 146 146 293 100.0 7e-80 MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH GGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGW TRNCNIQSDSALQQACEDVFRFDDAN >gi|223713515|gb|ACDM01000083.1| GENE 84 95809 - 96702 460 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 27 295 15 283 286 181 37 1e-44 MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATV ITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQSLFELEGPSRVLLTGERT ALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLS DAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFET EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR >gi|223713515|gb|ACDM01000083.1| GENE 85 96790 - 97341 496 183 aa, chain + ## HITS:1 COG:ampD KEGG:ns NR:ns ## COG: ampD COG3023 # Protein_GI_number: 16128103 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Escherichia coli K12 # 1 183 1 183 183 384 100.0 1e-107 MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT DTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSK ETT >gi|223713515|gb|ACDM01000083.1| GENE 86 97338 - 98192 876 284 aa, chain + ## HITS:1 COG:ampE KEGG:ns NR:ns ## COG: ampE COG3725 # Protein_GI_number: 16128104 # Func_class: V Defense mechanisms # Function: Membrane protein required for beta-lactamase induction # Organism: Escherichia coli K12 # 1 284 1 284 284 518 100.0 1e-147 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV >gi|223713515|gb|ACDM01000083.1| GENE 87 98235 - 99605 1629 456 aa, chain - ## HITS:1 COG:aroP KEGG:ns NR:ns ## COG: aroP COG1113 # Protein_GI_number: 16128105 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1 456 2 457 457 826 100.0 0 MEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFL IMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW YPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGG PQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYN SCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGL LMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIML MTPGMAISVYLIPVWLIVLGIGYLFKEKTAKAVKAH >gi|223713515|gb|ACDM01000083.1| GENE 88 100149 - 100913 721 254 aa, chain + ## HITS:1 COG:ECs0117 KEGG:ns NR:ns ## COG: ECs0117 COG2186 # Protein_GI_number: 15829371 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 254 1 254 254 402 100.0 1e-112 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRST DEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREES RRERSLRRLEQRKN >gi|223713515|gb|ACDM01000083.1| GENE 89 101074 - 103737 3503 887 aa, chain + ## HITS:1 COG:ECs0118 KEGG:ns NR:ns ## COG: ECs0118 COG2609 # Protein_GI_number: 15829372 # Func_class: C Energy production and conversion # Function: Pyruvate dehydrogenase complex, dehydrogenase (E1) component # Organism: Escherichia coli O157:H7 # 1 887 1 887 887 1837 100.0 0 MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNY INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDV CFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPH PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRH IRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQ DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY SMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD PAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHP LETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH HFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA >gi|223713515|gb|ACDM01000083.1| GENE 90 103752 - 105644 2173 630 aa, chain + ## HITS:1 COG:ECs0119 KEGG:ns NR:ns ## COG: ECs0119 COG0508 # Protein_GI_number: 15829373 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Escherichia coli O157:H7 # 1 630 1 630 630 945 99.0 0 MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS VGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVNVPDIGSDEVEV TEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVA GEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT VEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPA AKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILRED VQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNW VMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSS LSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTA GEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLS FDHRVIDGADGARFITIINNTLSDIRRLVM >gi|223713515|gb|ACDM01000083.1| GENE 91 105969 - 107393 682 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 452 3 444 458 267 33 2e-70 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGE LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK >gi|223713515|gb|ACDM01000083.1| GENE 92 107464 - 109317 612 617 aa, chain - ## HITS:1 COG:no KEGG:JW0113 NR:ns ## KEGG: JW0113 # Name: yacH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 617 1 617 617 1018 100.0 0 MKMTLPFKPHVLALICSAGLCAASTGLYIKSRTVEAPVEPQSTQLAVSDAAAVTFPATVS APPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQ GDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQ LAQQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSNTVLTANPVITEPATTVISIEPA NPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFVDSFVRGFGYSMGVATTYALFSS IDWDDDDHDHHHHDNDDYHHHDGGHRDGNGWQHNGDNINIDVNNFNRITGEHLTDKNMAW RHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDSQRQAAANQFQQRTHAAPV ITRDTQRQAAAQRFNEAEHYGSYDDFHDFSRRQPLTQQQKDAARQRYQSASPEQRQAVRE RMQTNPKIQQRREAARERIQSASPEQRQAVREKMQTNPQNQQRRDAARERIQSASPEQRQ VFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQR SAVCERLSERGARRLER >gi|223713515|gb|ACDM01000083.1| GENE 93 109672 - 112269 3144 865 aa, chain + ## HITS:1 COG:acnB KEGG:ns NR:ns ## COG: acnB COG1049 # Protein_GI_number: 16128111 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Escherichia coli K12 # 1 865 1 865 865 1705 100.0 0 MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA AYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEA DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT YRYLNFNQLSQYTEKADGVIFQTAV >gi|223713515|gb|ACDM01000083.1| GENE 94 112445 - 112807 499 120 aa, chain + ## HITS:1 COG:ECs0123 KEGG:ns NR:ns ## COG: ECs0123 COG3112 # Protein_GI_number: 15829377 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 120 17 136 136 217 100.0 3e-57 MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAG HEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK >gi|223713515|gb|ACDM01000083.1| GENE 95 112845 - 113639 877 264 aa, chain - ## HITS:1 COG:ECs0124 KEGG:ns NR:ns ## COG: ECs0124 COG1586 # Protein_GI_number: 15829378 # Func_class: E Amino acid transport and metabolism # Function: S-adenosylmethionine decarboxylase # Organism: Escherichia coli O157:H7 # 1 264 1 264 264 537 100.0 1e-153 MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIG ANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYP ESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHF IDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSE RQEITAALWKEMREIYYGRNMPAV >gi|223713515|gb|ACDM01000083.1| GENE 96 113655 - 114521 882 288 aa, chain - ## HITS:1 COG:speE KEGG:ns NR:ns ## COG: speE COG0421 # Protein_GI_number: 16128114 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Escherichia coli K12 # 1 288 1 288 288 602 100.0 1e-172 MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND ALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS >gi|223713515|gb|ACDM01000083.1| GENE 97 114627 - 114974 358 115 aa, chain - ## HITS:1 COG:no KEGG:ECSE_0122 NR:ns ## KEGG: ECSE_0122 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 115 42 156 156 231 100.0 8e-60 MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALV FFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK >gi|223713515|gb|ACDM01000083.1| GENE 98 115140 - 116690 1709 516 aa, chain + ## HITS:1 COG:yacK KEGG:ns NR:ns ## COG: yacK COG2132 # Protein_GI_number: 16128116 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli K12 # 1 516 1 516 516 1051 100.0 0 MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG GKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIP PGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN ARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPV SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLD MMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKP MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS EVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV >gi|223713515|gb|ACDM01000083.1| GENE 99 116892 - 119282 2578 796 aa, chain - ## HITS:1 COG:gcd KEGG:ns NR:ns ## COG: gcd COG4993 # Protein_GI_number: 16128117 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose dehydrogenase # Organism: Escherichia coli K12 # 1 796 1 796 796 1527 100.0 0 MAINNTGSRRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS KRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGA VAALVVALLISGGILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAG NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT KMGDYIVAYALPDDVK >gi|223713515|gb|ACDM01000083.1| GENE 100 119488 - 120024 868 178 aa, chain + ## HITS:1 COG:ECs0129 KEGG:ns NR:ns ## COG: ECs0129 COG0634 # Protein_GI_number: 15829383 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1 178 5 182 182 337 100.0 9e-93 MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSH EVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP KSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILLDE >gi|223713515|gb|ACDM01000083.1| GENE 101 120065 - 120727 644 220 aa, chain - ## HITS:1 COG:yadF KEGG:ns NR:ns ## COG: yadF COG0288 # Protein_GI_number: 16128119 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli K12 # 1 220 1 220 220 457 100.0 1e-129 MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEL FVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWL LHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA YGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK >gi|223713515|gb|ACDM01000083.1| GENE 102 120836 - 121762 946 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 302 1 304 311 369 63 1e-101 MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKS PLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLV NEKQGDRA >gi|223713515|gb|ACDM01000083.1| GENE 103 121759 - 122529 885 256 aa, chain + ## HITS:1 COG:ECs0132 KEGG:ns NR:ns ## COG: ECs0132 COG0842 # Protein_GI_number: 15829386 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 1 256 1 256 256 431 100.0 1e-121 MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQ FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFV GILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTP LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAF YLICWSLIQRGRGLRS >gi|223713515|gb|ACDM01000083.1| GENE 104 122634 - 123074 313 146 aa, chain + ## HITS:1 COG:yadI KEGG:ns NR:ns ## COG: yadI COG2893 # Protein_GI_number: 16128122 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli K12 # 1 146 1 146 146 302 100.0 1e-82 MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEG VIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELG APEVSSLWHQQQKNPPFVLKHNLYEY >gi|223713515|gb|ACDM01000083.1| GENE 105 123138 - 124367 862 409 aa, chain + ## HITS:1 COG:yadE KEGG:ns NR:ns ## COG: yadE COG0726 # Protein_GI_number: 16128123 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Escherichia coli K12 # 1 409 1 409 409 837 100.0 0 MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA ASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAG SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILR DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQS HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAA NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG >gi|223713515|gb|ACDM01000083.1| GENE 106 124371 - 124751 434 126 aa, chain - ## HITS:1 COG:ECs0135 KEGG:ns NR:ns ## COG: ECs0135 COG0853 # Protein_GI_number: 15829389 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Escherichia coli O157:H7 # 1 126 1 126 126 249 100.0 8e-67 MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAI AAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKA IPVQVA >gi|223713515|gb|ACDM01000083.1| GENE 107 124701 - 124913 97 70 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_0140 NR:ns ## KEGG: ECH74115_0140 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 7 70 1 64 64 101 95.0 9e-21 MSHFHAVEFALQHRANHNFYLSTLSLTKQAMPALRKFSRSIARFLFSVYSSDGICVSSLR TAPKRAMYRL >gi|223713515|gb|ACDM01000083.1| GENE 108 125025 - 125927 683 300 aa, chain + ## HITS:1 COG:yadD KEGG:ns NR:ns ## COG: yadD COG5464 # Protein_GI_number: 16128125 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 300 1 300 300 586 100.0 1e-167 MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHS TDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK HIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGES MMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKGMSREDVAEMANLPLAEIDKVINLI >gi|223713515|gb|ACDM01000083.1| GENE 109 126001 - 126852 1007 283 aa, chain - ## HITS:1 COG:panC KEGG:ns NR:ns ## COG: panC COG0414 # Protein_GI_number: 16128126 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Escherichia coli K12 # 1 283 1 283 283 548 100.0 1e-156 MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRA KDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRA DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVELA >gi|223713515|gb|ACDM01000083.1| GENE 110 126864 - 127538 884 224 aa, chain - ## HITS:1 COG:panB KEGG:ns NR:ns ## COG: panB COG0413 # Protein_GI_number: 16128127 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Escherichia coli K12 # 1 224 41 264 264 436 100.0 1e-122 MLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENA ATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFG ITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH >gi|223713515|gb|ACDM01000083.1| GENE 111 127771 - 128697 364 308 aa, chain - ## HITS:1 COG:yadC KEGG:ns NR:ns ## COG: yadC COG3539 # Protein_GI_number: 16128128 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 308 105 412 412 561 100.0 1e-160 MVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYDTITDIQSPGIYIGDPSNQEFFFSVT DSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKA YSPGTKVVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGAS PVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNP LMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGNIAIEPGEFKAT STFQVTYP >gi|223713515|gb|ACDM01000083.1| GENE 112 129059 - 129655 139 198 aa, chain - ## HITS:1 COG:no KEGG:JW0132 NR:ns ## KEGG: JW0132 # Name: yadK # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1 198 1 198 198 382 100.0 1e-105 MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGV GYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANE ISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPAL SVTSGQLMSHVLVDIYYE >gi|223713515|gb|ACDM01000083.1| GENE 113 129682 - 130284 428 200 aa, chain - ## HITS:1 COG:no KEGG:JW0133 NR:ns ## KEGG: JW0133 # Name: yadL # Def: predicted fimbrial-like adhesin protein # Organism: E.coli_J # Pathway: not_defined # 1 200 2 201 201 306 100.0 4e-82 MTFKNLRYGLSSSVVLAASLFSVLSYAATDSIGLTVITTVEMGTCTATLVNDSDQDISVV DFGDVYISEINAKTKVKTFKLKFKDCAGIPNKKAQIKLTKRATCEGTANDGAGFANGSTA ADKASAVAVEVWSTVTPATGSATQFSCVTPASQEVTISTAANAVVYYPMSARLVVEKNKT VNNVTAGKFSAPATFTVTYN >gi|223713515|gb|ACDM01000083.1| GENE 114 130299 - 130682 275 127 aa, chain - ## HITS:1 COG:yadM KEGG:ns NR:ns ## COG: yadM COG3539 # Protein_GI_number: 16128131 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 127 77 203 203 233 100.0 7e-62 MGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSN IGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALA TFNFIYQ >gi|223713515|gb|ACDM01000083.1| GENE 115 130885 - 133482 1492 865 aa, chain - ## HITS:1 COG:htrE KEGG:ns NR:ns ## COG: htrE COG3188 # Protein_GI_number: 16128132 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 1 865 1 865 865 1664 100.0 0 MTIEYTKNYHHLTRIATFCALLYCNTAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAI PGVYDVSVYVNDQPIINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLAR DETLGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLS YNLNGYHSETPGRKNESIYAAFNGGMNLGAWRLRASGNYNWMTDSGSNYDFKNRYVQRDI ASLRSQLILGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTIT QGGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVG RWDISGGQVLKDDIQDEPNLFQASYYYGLNNYLTGYTGIQITDNNYTAGLLGLGLNTSVG AFSFDVTHSNVRIPDDKTYQGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTL IDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNR SNYSIGYSNSTSWGSYSVSAQRSWNEDGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDT QISSDFKGNNQLNVSSSGYSDNARVSYSVNTGYTMNKASKDLSYVGGYASYESPWGTLAG SISANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTI DRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAI MNITRSDGKNIPFAADIYDEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLEQSKPVSCLA HYQQSPEAEKIAQSIILNGIRCQIQ >gi|223713515|gb|ACDM01000083.1| GENE 116 133517 - 134209 454 230 aa, chain - ## HITS:1 COG:ecpD KEGG:ns NR:ns ## COG: ecpD COG3121 # Protein_GI_number: 16128133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 230 17 246 246 452 100.0 1e-127 MAFSSSSIADIVISGTRVIYKSDQKSVNVRLENKGNNPLLVQSWLDTGDDNAEPGSITVP FTATPPVSRIDAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQL AFRTRIKLFYRPDGLKGNPSEAPLALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASG KRYPIDVKMIAPFSDEVMKVNGLNGKANSAKVHFYAINDFGGAIEGNARL >gi|223713515|gb|ACDM01000083.1| GENE 117 134355 - 134939 465 194 aa, chain - ## HITS:1 COG:yadN KEGG:ns NR:ns ## COG: yadN COG3539 # Protein_GI_number: 16128134 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 1 194 1 194 194 326 100.0 2e-89 MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTAT VGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSIN NPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATA GYVKTNTAYTITYQ >gi|223713515|gb|ACDM01000083.1| GENE 118 135309 - 135788 208 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 4 158 122 270 278 84 36 2e-15 MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVA LETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMK NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW >gi|223713515|gb|ACDM01000083.1| GENE 119 135785 - 137149 1377 454 aa, chain - ## HITS:1 COG:ECs0147 KEGG:ns NR:ns ## COG: ECs0147 COG0617 # Protein_GI_number: 15829401 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli O157:H7 # 1 454 1 454 454 862 100.0 0 MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRD LLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNV SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGV IRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESL KLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMR VNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTR DIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAP PDQKGMLNELDEEPSPRRRTRRPRKRAPRREGTA >gi|223713515|gb|ACDM01000083.1| GENE 120 137242 - 138138 519 298 aa, chain - ## HITS:1 COG:yadB KEGG:ns NR:ns ## COG: yadB COG0008 # Protein_GI_number: 16128137 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 298 11 308 308 611 100.0 1e-175 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETI LRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCR VLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDD HFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPK GDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVNSTFSNASC >gi|223713515|gb|ACDM01000083.1| GENE 121 138205 - 138660 677 151 aa, chain - ## HITS:1 COG:ECs0149 KEGG:ns NR:ns ## COG: ECs0149 COG1734 # Protein_GI_number: 15829403 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Escherichia coli O157:H7 # 1 151 1 151 151 261 100.0 5e-70 MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVT HMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVE IGIRRLEARPTADLCIDCKTLAEIREKQMAG >gi|223713515|gb|ACDM01000083.1| GENE 122 138838 - 139542 367 234 aa, chain - ## HITS:1 COG:ECs0150 KEGG:ns NR:ns ## COG: ECs0150 COG1489 # Protein_GI_number: 15829404 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 467 100.0 1e-132 MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTK RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAV LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL >gi|223713515|gb|ACDM01000083.1| GENE 123 139557 - 140087 470 176 aa, chain - ## HITS:1 COG:ligT KEGG:ns NR:ns ## COG: ligT COG1514 # Protein_GI_number: 16128140 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Escherichia coli K12 # 1 176 4 179 179 336 100.0 1e-92 MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR PFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ >gi|223713515|gb|ACDM01000083.1| GENE 124 140116 - 142590 2155 824 aa, chain + ## HITS:1 COG:hrpB KEGG:ns NR:ns ## COG: hrpB COG1643 # Protein_GI_number: 16128141 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli K12 # 1 824 1 824 824 1485 99.0 0 MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ QMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT RDLSAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS Prediction of potential genes in microbial genomes Time: Mon May 16 19:25:10 2011 Seq name: gi|223713514|gb|ACDM01000084.1| Escherichia sp. 4_1_40B cont1.84, whole genome shotgun sequence Length of sequence - 58891 bp Number of predicted genes - 53, with homology - 53 Number of transcription units - 25, operones - 14 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 56 - 115 1.7 1 1 Tu 1 . + CDS 157 - 2691 3007 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Prom 2831 - 2890 6.2 2 2 Op 1 7/0.286 + CDS 2911 - 5154 2585 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 3 2 Op 2 14/0.000 + CDS 5205 - 6002 232 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 4 2 Op 3 33/0.000 + CDS 6002 - 6892 900 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 5 2 Op 4 . + CDS 6889 - 8871 2009 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Term 8848 - 8892 6.5 6 3 Tu 1 . - CDS 9029 - 10309 1476 ## COG0001 Glutamate-1-semialdehyde aminotransferase - Prom 10418 - 10477 5.4 + Prom 10300 - 10359 3.8 7 4 Op 1 3/1.000 + CDS 10534 - 11955 1516 ## COG0038 Chloride channel protein EriC 8 4 Op 2 . + CDS 12037 - 12381 488 ## COG0316 Uncharacterized conserved protein + Term 12393 - 12429 8.2 9 5 Tu 1 . - CDS 12428 - 12973 611 ## COG2860 Predicted membrane protein - Prom 13019 - 13078 2.5 10 6 Op 1 5/0.429 - CDS 13089 - 13889 807 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 11 6 Op 2 . - CDS 13882 - 14580 712 ## COG0775 Nucleoside phosphorylase - Prom 14681 - 14740 4.3 + Prom 14533 - 14592 2.0 12 7 Tu 1 . + CDS 14664 - 16181 1052 ## COG0232 dGTP triphosphohydrolase + Prom 16203 - 16262 2.8 13 8 Tu 1 . + CDS 16311 - 17735 1644 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 17746 - 17781 6.5 + Prom 17767 - 17826 3.8 14 9 Tu 1 . + CDS 17890 - 19047 1174 ## COG3835 Sugar diacid utilization regulator + Term 19112 - 19146 1.2 15 10 Tu 1 . - CDS 19136 - 19522 462 ## ECIAI1_0162 hypothetical protein - Prom 19551 - 19610 3.6 16 11 Tu 1 . - CDS 19684 - 20496 557 ## COG1408 Predicted phosphohydrolases - Term 20504 - 20538 5.0 17 12 Op 1 5/0.429 - CDS 20550 - 21374 1028 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 18 12 Op 2 9/0.143 - CDS 21405 - 24077 2200 ## COG2844 UTP:GlnB (protein PII) uridylyltransferase - Term 24102 - 24135 4.5 19 12 Op 3 . - CDS 24139 - 24933 827 ## COG0024 Methionine aminopeptidase - Prom 25049 - 25108 4.5 + Prom 25008 - 25067 3.4 20 13 Op 1 38/0.000 + CDS 25103 - 26026 1604 ## PROTEIN SUPPORTED gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2 + Term 26201 - 26234 3.1 + Prom 26199 - 26258 3.8 21 13 Op 2 24/0.000 + CDS 26284 - 27135 1001 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 27146 - 27179 5.2 + Prom 27180 - 27239 4.9 22 13 Op 3 . + CDS 27282 - 28007 1028 ## COG0528 Uridylate kinase - Term 28024 - 28054 -0.7 23 14 Tu 1 . - CDS 28187 - 28384 60 ## ECIAI39_0174 hypothetical protein - Prom 28535 - 28594 2.1 + Prom 28163 - 28222 5.4 24 15 Op 1 8/0.286 + CDS 28299 - 28856 809 ## COG0233 Ribosome recycling factor + Prom 28866 - 28925 2.1 25 15 Op 2 7/0.286 + CDS 28948 - 30144 917 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase + Term 30249 - 30278 0.4 + Prom 30151 - 30210 3.9 26 16 Op 1 32/0.000 + CDS 30333 - 31091 523 ## COG0020 Undecaprenyl pyrophosphate synthase 27 16 Op 2 12/0.000 + CDS 31212 - 31961 648 ## COG0575 CDP-diglyceride synthetase 28 16 Op 3 18/0.000 + CDS 31973 - 33325 911 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 29 16 Op 4 17/0.000 + CDS 33355 - 35787 2682 ## COG4775 Outer membrane protein/protective antigen OMA87 + Prom 35797 - 35856 2.1 30 16 Op 5 15/0.000 + CDS 35909 - 36394 625 ## COG2825 Outer membrane protein 31 16 Op 6 18/0.000 + CDS 36398 - 37423 926 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase + Term 37450 - 37501 7.1 + Prom 37442 - 37501 4.0 32 17 Op 1 25/0.000 + CDS 37528 - 37983 499 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 33 17 Op 2 11/0.000 + CDS 37987 - 38775 772 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 34 17 Op 3 11/0.000 + CDS 38775 - 39923 1185 ## COG0763 Lipid A disaccharide synthetase 35 17 Op 4 6/0.286 + CDS 39920 - 40516 702 ## COG0164 Ribonuclease HII 36 17 Op 5 7/0.286 + CDS 40553 - 44035 3567 ## COG0587 DNA polymerase III, alpha subunit 37 17 Op 6 3/1.000 + CDS 44048 - 45007 1344 ## COG0825 Acetyl-CoA carboxylase alpha subunit + Term 45028 - 45057 1.2 + Prom 45026 - 45085 3.5 38 18 Op 1 1/1.000 + CDS 45106 - 47247 2029 ## COG1982 Arginine/lysine/ornithine decarboxylases 39 18 Op 2 2/1.000 + CDS 47304 - 47693 423 ## COG0346 Lactoylglutathione lyase and related lyases + Term 47713 - 47745 4.7 40 19 Tu 1 . + CDS 47758 - 49056 1138 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Term 49268 - 49326 1.3 - Term 49051 - 49095 6.6 41 20 Op 1 . - CDS 49105 - 49359 303 ## COG4568 Transcriptional antiterminator 42 20 Op 2 . - CDS 49352 - 49552 165 ## ECIAI39_0458 hypothetical protein - Prom 49624 - 49683 3.3 + Prom 49637 - 49696 1.8 43 21 Op 1 5/0.429 + CDS 49718 - 50263 787 ## COG4681 Uncharacterized protein conserved in bacteria 44 21 Op 2 4/0.857 + CDS 50260 - 50682 245 ## COG1186 Protein chain release factor B 45 21 Op 3 . + CDS 50696 - 51406 692 ## COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance - Term 51357 - 51402 2.1 46 22 Op 1 . - CDS 51606 - 52430 362 ## JW5016 predicted lipoprotein - Term 52438 - 52478 9.0 47 22 Op 2 6/0.286 - CDS 52484 - 54202 2125 ## COG0442 Prolyl-tRNA synthetase - Term 54220 - 54250 2.7 48 23 Op 1 . - CDS 54314 - 55021 614 ## COG1720 Uncharacterized conserved protein 49 23 Op 2 . - CDS 55018 - 55422 368 ## EC55989_0194 outer membrane lipoprotein - Prom 55447 - 55506 2.5 - Term 55469 - 55505 6.7 50 24 Op 1 22/0.000 - CDS 55540 - 56355 1222 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 51 24 Op 2 32/0.000 - CDS 56395 - 57048 926 ## COG2011 ABC-type metal ion transport system, permease component 52 24 Op 3 . - CDS 57041 - 58072 1186 ## COG1135 ABC-type metal ion transport system, ATPase component + Prom 58034 - 58093 3.9 53 25 Tu 1 . + CDS 58260 - 58835 555 ## COG0241 Histidinol phosphatase and related phosphatases Predicted protein(s) >gi|223713514|gb|ACDM01000084.1| GENE 1 157 - 2691 3007 844 aa, chain + ## HITS:1 COG:mrcB KEGG:ns NR:ns ## COG: mrcB COG0744 # Protein_GI_number: 16128142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Escherichia coli K12 # 1 844 1 844 844 1521 100.0 0 MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEEPMPRKGKGKGKGRKPR GKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTIS KNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHL ATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY NPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQ ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRF SGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIAL RQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPK DQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAER AVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTI TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGM RILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDM FGSN >gi|223713514|gb|ACDM01000084.1| GENE 2 2911 - 5154 2585 747 aa, chain + ## HITS:1 COG:ECs0154 KEGG:ns NR:ns ## COG: ECs0154 COG1629 # Protein_GI_number: 15829408 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 1 747 1 747 747 1461 99.0 0 MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPQESAWGPAAT IAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTY DHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGG LLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKG SEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN EGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSK QCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDI NAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLV TLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVG KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRA RGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPL SGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE YVASCFNTYGCFWGAERQVVATATFRF >gi|223713514|gb|ACDM01000084.1| GENE 3 5205 - 6002 232 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 9 235 274 507 563 94 29 2e-18 MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI AHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET LEMIYGIPMGILPHPAGAAPVSFVY >gi|223713514|gb|ACDM01000084.1| GENE 4 6002 - 6892 900 296 aa, chain + ## HITS:1 COG:fhuD KEGG:ns NR:ns ## COG: fhuD COG0614 # Protein_GI_number: 16128145 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 296 1 296 296 585 100.0 1e-167 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA >gi|223713514|gb|ACDM01000084.1| GENE 5 6889 - 8871 2009 660 aa, chain + ## HITS:1 COG:fhuB KEGG:ns NR:ns ## COG: fhuB COG0609 # Protein_GI_number: 16128146 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Escherichia coli K12 # 1 660 1 660 660 968 99.0 0 MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP RLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA ALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST GTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLA IVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR VWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLM AVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRML LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL CRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARM MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR >gi|223713514|gb|ACDM01000084.1| GENE 6 9029 - 10309 1476 426 aa, chain - ## HITS:1 COG:hemL KEGG:ns NR:ns ## COG: hemL COG0001 # Protein_GI_number: 16128147 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Escherichia coli K12 # 1 426 1 426 426 843 99.0 0 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCT YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT DAESVTCYQDVMACDVERFKRFFHMMLGEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR RVFAKL >gi|223713514|gb|ACDM01000084.1| GENE 7 10534 - 11955 1516 473 aa, chain + ## HITS:1 COG:yadQ KEGG:ns NR:ns ## COG: yadQ COG0038 # Protein_GI_number: 16128148 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Escherichia coli K12 # 1 473 1 473 473 789 100.0 0 MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLAT GAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALID VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG LCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT >gi|223713514|gb|ACDM01000084.1| GENE 8 12037 - 12381 488 114 aa, chain + ## HITS:1 COG:STM0204 KEGG:ns NR:ns ## COG: STM0204 COG0316 # Protein_GI_number: 16763594 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 114 16 129 129 221 99.0 4e-58 MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDM TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI >gi|223713514|gb|ACDM01000084.1| GENE 9 12428 - 12973 611 181 aa, chain - ## HITS:1 COG:yadS KEGG:ns NR:ns ## COG: yadS COG2860 # Protein_GI_number: 16128150 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 181 27 207 207 296 100.0 1e-80 MDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLP KWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILR TEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENG R >gi|223713514|gb|ACDM01000084.1| GENE 10 13089 - 13889 807 266 aa, chain - ## HITS:1 COG:yadT KEGG:ns NR:ns ## COG: yadT COG0614 # Protein_GI_number: 16128151 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 266 1 266 266 482 100.0 1e-136 MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKI EQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALR QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVL EVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLT SDWFERASPRIILAAQQLCNALSQVD >gi|223713514|gb|ACDM01000084.1| GENE 11 13882 - 14580 712 232 aa, chain - ## HITS:1 COG:STM0207 KEGG:ns NR:ns ## COG: STM0207 COG0775 # Protein_GI_number: 16763597 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Salmonella typhimurium LT2 # 1 232 1 232 232 412 96.0 1e-115 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK ADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG >gi|223713514|gb|ACDM01000084.1| GENE 12 14664 - 16181 1052 505 aa, chain + ## HITS:1 COG:dgt KEGG:ns NR:ns ## COG: dgt COG0232 # Protein_GI_number: 16128153 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Escherichia coli K12 # 1 505 1 505 505 1011 99.0 0 MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDL CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVEQLELQGYRVISGLLEIYRPLLSL SLSDFTELVEKERVKRFPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL LQDYISGMTDLYAWDEYRRLMAVEQ >gi|223713514|gb|ACDM01000084.1| GENE 13 16311 - 17735 1644 474 aa, chain + ## HITS:1 COG:ECs0165 KEGG:ns NR:ns ## COG: ECs0165 COG0265 # Protein_GI_number: 15829419 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Escherichia coli O157:H7 # 1 474 1 474 474 780 100.0 0 MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGS TTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIID ADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGAL VNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNS ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG SKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGT PAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ >gi|223713514|gb|ACDM01000084.1| GENE 14 17890 - 19047 1174 385 aa, chain + ## HITS:1 COG:yaeG KEGG:ns NR:ns ## COG: yaeG COG3835 # Protein_GI_number: 16128155 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Escherichia coli K12 # 1 385 7 391 391 734 100.0 0 MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRV VDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSR LMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDS AMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKE YGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRG DWQANELARPLARLKTMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISE LTGLDLGNFDDRLLLYVALQLDEER >gi|223713514|gb|ACDM01000084.1| GENE 15 19136 - 19522 462 128 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_0162 NR:ns ## KEGG: ECIAI1_0162 # Name: yaeH # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 128 1 128 128 218 100.0 6e-56 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD GVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA DLEKLTRK >gi|223713514|gb|ACDM01000084.1| GENE 16 19684 - 20496 557 270 aa, chain - ## HITS:1 COG:yaeI KEGG:ns NR:ns ## COG: yaeI COG1408 # Protein_GI_number: 16128157 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Escherichia coli K12 # 24 270 1 247 247 523 100.0 1e-148 MISRRRFLQATAATIATSSGFGYMHYCEPGWFELIRHRLAFFKDNAAPFKILFLADLHYS RFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMSLNFSAFSDVLSPLAECAPTFACFGN HDRPVGTEKNHLIGETLKSAGITVLFNQATVIATPNRQFELVGTGDLWAGQCKPPPASEA NLPRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFG ERHIYTTRGVGSLYGLRLNCRPEVTMLELV >gi|223713514|gb|ACDM01000084.1| GENE 17 20550 - 21374 1028 274 aa, chain - ## HITS:1 COG:dapD KEGG:ns NR:ns ## COG: dapD COG2171 # Protein_GI_number: 16128159 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Escherichia coli K12 # 1 274 1 274 274 521 100.0 1e-148 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID >gi|223713514|gb|ACDM01000084.1| GENE 18 21405 - 24077 2200 890 aa, chain - ## HITS:1 COG:glnD KEGG:ns NR:ns ## COG: glnD COG2844 # Protein_GI_number: 16128160 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: UTP:GlnB (protein PII) uridylyltransferase # Organism: Escherichia coli K12 # 1 890 1 890 890 1790 100.0 0 MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDVDLLILSRKKLPDDQ AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL IDLRDETLFMRQPEAILRMFYTMVHNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKL FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGNPLSADRHEVIRFGLEQVLTQ SSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG >gi|223713514|gb|ACDM01000084.1| GENE 19 24139 - 24933 827 264 aa, chain - ## HITS:1 COG:ECs0170 KEGG:ns NR:ns ## COG: ECs0170 COG0024 # Protein_GI_number: 15829424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Escherichia coli O157:H7 # 1 264 1 264 264 537 100.0 1e-153 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV TDNGCEILTLRKDDTIPAIISHDE >gi|223713514|gb|ACDM01000084.1| GENE 20 25103 - 26026 1604 307 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2 [Escherichia coli CFT073] # 1 307 1 307 307 622 99 1e-177 MVSTTYLWYKARRTSDPFRIHRLDGSDNLTLCNNTHVSAHIPGCPLGSVIWDTWRHNPNF YIEVLIMATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEAL AELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRL KDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIK EANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAE ESFVEAE >gi|223713514|gb|ACDM01000084.1| GENE 21 26284 - 27135 1001 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 280 1 279 283 390 71 1e-107 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV ALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEF IKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK TVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS >gi|223713514|gb|ACDM01000084.1| GENE 22 27282 - 28007 1028 241 aa, chain + ## HITS:1 COG:ECs0173 KEGG:ns NR:ns ## COG: ECs0173 COG0528 # Protein_GI_number: 15829427 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Escherichia coli O157:H7 # 1 241 1 241 241 460 100.0 1e-130 MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNL FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWA EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT ATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT E >gi|223713514|gb|ACDM01000084.1| GENE 23 28187 - 28384 60 65 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_0174 NR:ns ## KEGG: ECIAI39_0174 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 60 12 71 92 92 98.0 3e-18 MRILLIWVLNASTHLSMRTSASFLISLITLRILENLSQSDQTVTHSGSVLSIALIKHITG NRLDY >gi|223713514|gb|ACDM01000084.1| GENE 24 28299 - 28856 809 185 aa, chain + ## HITS:1 COG:ECs0174 KEGG:ns NR:ns ## COG: ECs0174 COG0233 # Protein_GI_number: 15829428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Escherichia coli O157:H7 # 1 185 1 185 185 296 100.0 1e-80 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA ELMQF >gi|223713514|gb|ACDM01000084.1| GENE 25 28948 - 30144 917 398 aa, chain + ## HITS:1 COG:dxr KEGG:ns NR:ns ## COG: dxr COG0743 # Protein_GI_number: 16128166 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Escherichia coli K12 # 1 398 1 398 398 759 100.0 0 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEA SAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS >gi|223713514|gb|ACDM01000084.1| GENE 26 30333 - 31091 523 252 aa, chain + ## HITS:1 COG:ECs0176 KEGG:ns NR:ns ## COG: ECs0176 COG0020 # Protein_GI_number: 15829430 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Escherichia coli O157:H7 # 1 252 2 253 253 509 100.0 1e-144 MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNG IEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQ ERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV CMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRER RFGGTEPGDETA >gi|223713514|gb|ACDM01000084.1| GENE 27 31212 - 31961 648 249 aa, chain + ## HITS:1 COG:ECs0177 KEGG:ns NR:ns ## COG: ECs0177 COG0575 # Protein_GI_number: 15829431 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Escherichia coli O157:H7 # 1 249 1 249 249 418 100.0 1e-117 MLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWW IVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLY VMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVA PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC LLLLVFRTL >gi|223713514|gb|ACDM01000084.1| GENE 28 31973 - 33325 911 450 aa, chain + ## HITS:1 COG:ECs0178 KEGG:ns NR:ns ## COG: ECs0178 COG0750 # Protein_GI_number: 15829432 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Escherichia coli O157:H7 # 1 450 1 450 450 872 100.0 0 MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWLVF IIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS ERVQDFCYRIGSILLVLLMGLALFNDFSRL >gi|223713514|gb|ACDM01000084.1| GENE 29 33355 - 35787 2682 810 aa, chain + ## HITS:1 COG:ECs0179 KEGG:ns NR:ns ## COG: ECs0179 COG4775 # Protein_GI_number: 15829433 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Escherichia coli O157:H7 # 1 810 1 810 810 1609 100.0 0 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTK VTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS KDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQ PQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVT IPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTV RGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPL GPLVFSYAQPFKKYDGDKAEQFQFNIGKTW >gi|223713514|gb|ACDM01000084.1| GENE 30 35909 - 36394 625 161 aa, chain + ## HITS:1 COG:STM0225 KEGG:ns NR:ns ## COG: STM0225 COG2825 # Protein_GI_number: 16763615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 209 90.0 2e-54 MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRM ETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI QTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK >gi|223713514|gb|ACDM01000084.1| GENE 31 36398 - 37423 926 341 aa, chain + ## HITS:1 COG:lpxD KEGG:ns NR:ns ## COG: lpxD COG1044 # Protein_GI_number: 16128172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Escherichia coli K12 # 1 341 1 341 341 650 100.0 0 MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVV MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGA NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHN VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD >gi|223713514|gb|ACDM01000084.1| GENE 32 37528 - 37983 499 151 aa, chain + ## HITS:1 COG:ZfabZ KEGG:ns NR:ns ## COG: ZfabZ COG0764 # Protein_GI_number: 15799862 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 EDL933 # 1 151 1 151 151 295 100.0 2e-80 MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT RRGLTRFKGVALVDGKVVCEATMMCARSREA >gi|223713514|gb|ACDM01000084.1| GENE 33 37987 - 38775 772 262 aa, chain + ## HITS:1 COG:lpxA KEGG:ns NR:ns ## COG: lpxA COG1043 # Protein_GI_number: 16128174 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Escherichia coli K12 # 1 262 1 262 262 511 100.0 1e-145 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMIN AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELA ETYPEVKAFTDFFARSTRGLIR >gi|223713514|gb|ACDM01000084.1| GENE 34 38775 - 39923 1185 382 aa, chain + ## HITS:1 COG:lpxB KEGG:ns NR:ns ## COG: lpxB COG0763 # Protein_GI_number: 16128175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Escherichia coli K12 # 1 382 1 382 382 748 100.0 0 MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEEL AVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHY VSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNA ARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQ FERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRE LHQQIRCNADEQAAQAVLELAQ >gi|223713514|gb|ACDM01000084.1| GENE 35 39920 - 40516 702 198 aa, chain + ## HITS:1 COG:rnhB KEGG:ns NR:ns ## COG: rnhB COG0164 # Protein_GI_number: 16128176 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Escherichia coli K12 # 1 198 1 198 198 372 100.0 1e-103 MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEE IKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAM AVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGAT EHHRRSFGPVKRALGLAS >gi|223713514|gb|ACDM01000084.1| GENE 36 40553 - 44035 3567 1160 aa, chain + ## HITS:1 COG:dnaE KEGG:ns NR:ns ## COG: dnaE COG0587 # Protein_GI_number: 16128177 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Escherichia coli K12 # 1 1160 1 1160 1160 2374 100.0 0 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD RLLNDLRGLIGSEQVELEFD >gi|223713514|gb|ACDM01000084.1| GENE 37 44048 - 45007 1344 319 aa, chain + ## HITS:1 COG:ECs0187 KEGG:ns NR:ns ## COG: ECs0187 COG0825 # Protein_GI_number: 15829441 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Escherichia coli O157:H7 # 1 319 1 319 319 619 100.0 1e-177 MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGA WQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQK GRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEA IARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS ADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVL STEDLKNRRYQRLMSYGYA >gi|223713514|gb|ACDM01000084.1| GENE 38 45106 - 47247 2029 713 aa, chain + ## HITS:1 COG:ldcC KEGG:ns NR:ns ## COG: ldcC COG1982 # Protein_GI_number: 16128179 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 1 713 1 713 713 1511 100.0 0 MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQY TDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADV SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLI DRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVH AVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVAGKVIF ETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAAMLRGNP GKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDAD ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIG IDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKH DLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLM PGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLKMAG >gi|223713514|gb|ACDM01000084.1| GENE 39 47304 - 47693 423 129 aa, chain + ## HITS:1 COG:yaeR KEGG:ns NR:ns ## COG: yaeR COG0346 # Protein_GI_number: 16128180 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Escherichia coli K12 # 1 129 10 138 138 270 99.0 6e-73 MLGLKQVHHIAIIATDYAVSTAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFS FPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCETIRVDPYTQKRFTFFNDPD GLPLELYEQ >gi|223713514|gb|ACDM01000084.1| GENE 40 47758 - 49056 1138 432 aa, chain + ## HITS:1 COG:mesJ KEGG:ns NR:ns ## COG: mesJ COG0037 # Protein_GI_number: 16128181 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Escherichia coli K12 # 1 432 1 432 432 805 100.0 0 MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAW VTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQ CETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESN QDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQGT LQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEI RRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRF KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGE NGVSFVWQKTLS >gi|223713514|gb|ACDM01000084.1| GENE 41 49105 - 49359 303 84 aa, chain - ## HITS:1 COG:ECs0191 KEGG:ns NR:ns ## COG: ECs0191 COG4568 # Protein_GI_number: 15829445 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1 84 3 86 86 155 100.0 1e-38 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET RELRLDKITSFSHPEIGTVVVSES >gi|223713514|gb|ACDM01000084.1| GENE 42 49352 - 49552 165 66 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_0458 NR:ns ## KEGG: ECIAI39_0458 # Name: yaeP # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 66 1 66 66 107 100.0 1e-22 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLV SDYVNE >gi|223713514|gb|ACDM01000084.1| GENE 43 49718 - 50263 787 181 aa, chain + ## HITS:1 COG:yaeQ KEGG:ns NR:ns ## COG: yaeQ COG4681 # Protein_GI_number: 16128183 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 181 1 181 181 331 100.0 5e-91 MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRLLAWLKYADERLQFTRG LCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWWQQNQ SKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGVIWLSDDKNNLEVNLTAWQQP S >gi|223713514|gb|ACDM01000084.1| GENE 44 50260 - 50682 245 140 aa, chain + ## HITS:1 COG:yaeJ KEGG:ns NR:ns ## COG: yaeJ COG1186 # Protein_GI_number: 16128184 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli K12 # 1 140 1 140 140 210 100.0 8e-55 MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAAS HHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLA SKAQKSSVKAMRGKVRSGRE >gi|223713514|gb|ACDM01000084.1| GENE 45 50696 - 51406 692 236 aa, chain + ## HITS:1 COG:cutF KEGG:ns NR:ns ## COG: cutF COG3015 # Protein_GI_number: 16128185 # Func_class: M Cell wall/membrane/envelope biogenesis; P Inorganic ion transport and metabolism # Function: Uncharacterized lipoprotein NlpE involved in copper resistance # Organism: Escherichia coli K12 # 1 236 1 236 236 470 100.0 1e-132 MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPCADCEGIETS LFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDALEML DREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELE RSYLAARGHSEKPVLLSVEGHFTLEGNPDTGAPTKVLAPDTAGKFYPNQDCSSLGQ >gi|223713514|gb|ACDM01000084.1| GENE 46 51606 - 52430 362 274 aa, chain - ## HITS:1 COG:no KEGG:JW5016 NR:ns ## KEGG: JW5016 # Name: yaeF # Def: predicted lipoprotein # Organism: E.coli_J # Pathway: not_defined # 1 274 1 274 274 528 100.0 1e-148 MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEI TAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAM KHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSED FRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRI GDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR >gi|223713514|gb|ACDM01000084.1| GENE 47 52484 - 54202 2125 572 aa, chain - ## HITS:1 COG:ECs0196 KEGG:ns NR:ns ## COG: ECs0196 COG0442 # Protein_GI_number: 15829450 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 572 1 572 572 1135 99.0 0 MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDTSDYAANIELAEAIA PKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVEGSSFPLVALLVRG DHELNEVKAEKLPQVASPLTFATEEEIRAVVKAGPGSLGPVNMPIPVVIDRTVAAMSDFA AGANIDGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTK YSEALKASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILP MNMHKSFRVQELAEKLYSELRAQGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLD NDDIEYKYRRNGEKQLIKTGDIVEYLVKQIKG >gi|223713514|gb|ACDM01000084.1| GENE 48 54314 - 55021 614 235 aa, chain - ## HITS:1 COG:ECs0197 KEGG:ns NR:ns ## COG: ECs0197 COG1720 # Protein_GI_number: 15829451 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 235 1 235 235 469 99.0 1e-132 MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWIL FVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEVVCHKDSVILK LGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAEMAVSFTAEVEKQLLTLEKRY PQLTLFIREVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVTDAGFEVFALEPR >gi|223713514|gb|ACDM01000084.1| GENE 49 55018 - 55422 368 134 aa, chain - ## HITS:1 COG:no KEGG:EC55989_0194 NR:ns ## KEGG: EC55989_0194 # Name: rcsF # Def: outer membrane lipoprotein # Organism: E.coli_55989 # Pathway: Two-component system [PATH:eck02020] # 1 134 1 134 134 220 100.0 1e-56 MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVG KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR QAVCIGSALNITAK >gi|223713514|gb|ACDM01000084.1| GENE 50 55540 - 56355 1222 271 aa, chain - ## HITS:1 COG:yaeC KEGG:ns NR:ns ## COG: yaeC COG1464 # Protein_GI_number: 16128190 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli K12 # 1 271 1 271 271 507 100.0 1e-144 MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLD VELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKK IKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIV ELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDA ENVKKFVQAYQSDEVYEAANKVFNGGAVKGW >gi|223713514|gb|ACDM01000084.1| GENE 51 56395 - 57048 926 217 aa, chain - ## HITS:1 COG:yaeE KEGG:ns NR:ns ## COG: yaeE COG2011 # Protein_GI_number: 16128191 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Escherichia coli K12 # 1 217 1 217 217 310 100.0 9e-85 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIV NIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLI EASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYG YIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK >gi|223713514|gb|ACDM01000084.1| GENE 52 57041 - 58072 1186 343 aa, chain - ## HITS:1 COG:ECs0201 KEGG:ns NR:ns ## COG: ECs0201 COG1135 # Protein_GI_number: 15829455 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1 343 1 343 343 676 99.0 0 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF IQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQ MDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV >gi|223713514|gb|ACDM01000084.1| GENE 53 58260 - 58835 555 191 aa, chain + ## HITS:1 COG:ECs0202 KEGG:ns NR:ns ## COG: ECs0202 COG0241 # Protein_GI_number: 15829456 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 395 100.0 1e-110 MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIAR GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSA RDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLP QAIKKQQKPAQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:26:16 2011 Seq name: gi|223713513|gb|ACDM01000085.1| Escherichia sp. 4_1_40B cont1.85, whole genome shotgun sequence Length of sequence - 159408 bp Number of predicted genes - 149, with homology - 148 Number of transcription units - 76, operones - 38 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 103 - 162 7.7 1 1 Op 1 5/0.258 + CDS 293 - 985 567 ## COG2186 Transcriptional regulators 2 1 Op 2 . + CDS 1008 - 2435 847 ## COG0477 Permeases of the major facilitator superfamily 3 2 Op 1 13/0.000 - CDS 2401 - 3384 850 ## COG1609 Transcriptional regulators 4 2 Op 2 8/0.032 - CDS 3397 - 4341 799 ## COG0524 Sugar kinases, ribokinase family 5 3 Op 1 16/0.000 - CDS 4452 - 5342 1179 ## COG1879 ABC-type sugar transport system, periplasmic component 6 3 Op 2 21/0.000 - CDS 5367 - 6332 1267 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 7 3 Op 3 9/0.032 - CDS 6337 - 7842 1798 ## COG1129 ABC-type sugar transport system, ATPase component 8 3 Op 4 4/0.290 - CDS 7850 - 8269 423 ## COG1869 ABC-type ribose transport system, auxiliary component - Prom 8364 - 8423 4.1 - Term 8390 - 8430 5.6 9 4 Tu 1 . - CDS 8436 - 10304 1764 ## COG3158 K+ transporter - Prom 10446 - 10505 4.5 + Prom 10431 - 10490 2.8 10 5 Op 1 7/0.097 + CDS 10527 - 12023 1445 ## COG0714 MoxR-like ATPases 11 5 Op 2 . + CDS 12017 - 13468 1122 ## COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 12 6 Tu 1 . - CDS 13473 - 14465 1200 ## COG2502 Asparagine synthetase A - Prom 14535 - 14594 4.0 + Prom 14532 - 14591 6.7 13 7 Op 1 4/0.290 + CDS 14617 - 15075 498 ## COG1522 Transcriptional regulators + Prom 15084 - 15143 2.0 14 7 Op 2 5/0.258 + CDS 15165 - 15608 573 ## COG0716 Flavodoxins + Prom 15835 - 15894 4.7 15 8 Op 1 24/0.000 + CDS 15987 - 17876 1955 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 16 8 Op 2 3/0.581 + CDS 17940 - 18563 559 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division + Term 18651 - 18702 4.2 + Prom 19036 - 19095 5.8 17 9 Op 1 8/0.032 + CDS 19180 - 19560 192 ## COG3312 F0F1-type ATP synthase, subunit I 18 9 Op 2 40/0.000 + CDS 19569 - 20384 820 ## COG0356 F0F1-type ATP synthase, subunit a 19 9 Op 3 37/0.000 + CDS 20431 - 20670 374 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 20 9 Op 4 38/0.000 + CDS 20732 - 21202 567 ## COG0711 F0F1-type ATP synthase, subunit b 21 9 Op 5 41/0.000 + CDS 21217 - 21750 587 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 22 9 Op 6 42/0.000 + CDS 21763 - 23304 1803 ## COG0056 F0F1-type ATP synthase, alpha subunit 23 9 Op 7 42/0.000 + CDS 23355 - 24218 1011 ## COG0224 F0F1-type ATP synthase, gamma subunit 24 9 Op 8 42/0.000 + CDS 24245 - 25627 1696 ## COG0055 F0F1-type ATP synthase, beta subunit 25 9 Op 9 6/0.194 + CDS 25648 - 26067 486 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 26090 - 26123 4.5 + Prom 26300 - 26359 3.2 26 10 Op 1 9/0.032 + CDS 26420 - 27790 1693 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 27 10 Op 2 2/0.871 + CDS 27952 - 29781 2335 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 29787 - 29824 5.3 + Prom 29957 - 30016 8.3 28 11 Op 1 39/0.000 + CDS 30095 - 31135 1241 ## COG0226 ABC-type phosphate transport system, periplasmic component 29 11 Op 2 38/0.000 + CDS 31222 - 32181 1279 ## COG0573 ABC-type phosphate transport system, permease component 30 11 Op 3 41/0.000 + CDS 32181 - 33071 1151 ## COG0581 ABC-type phosphate transport system, permease component + Prom 33159 - 33218 1.7 31 11 Op 4 32/0.000 + CDS 33254 - 34027 345 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 32 11 Op 5 1/0.935 + CDS 34042 - 34767 907 ## COG0704 Phosphate uptake regulator + Term 34777 - 34819 9.0 + Prom 34784 - 34843 6.8 33 12 Tu 1 . + CDS 35053 - 35889 635 ## COG3711 Transcriptional antiterminator + Term 35937 - 35992 12.3 + Prom 35924 - 35983 4.9 34 13 Op 1 8/0.032 + CDS 36023 - 37900 1335 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 35 13 Op 2 1/0.935 + CDS 37919 - 39331 1165 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 39336 - 39379 9.2 36 14 Op 1 . + CDS 39400 - 41016 1537 ## COG4580 Maltoporin (phage lambda and maltose receptor) 37 14 Op 2 . + CDS 41043 - 42212 1144 ## COG2382 Enterochelin esterase and related enzymes 38 14 Op 3 . + CDS 42227 - 42949 801 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 42963 - 43004 8.0 39 15 Op 1 . - CDS 43011 - 43598 250 ## COG3196 Uncharacterized protein conserved in bacteria 40 15 Op 2 . - CDS 43647 - 44114 237 ## JW3694 predicted inner membrane protein 41 15 Op 3 . - CDS 44181 - 44846 640 ## COG0637 Predicted phosphatase/phosphohexomutase - Prom 44908 - 44967 4.3 + Prom 44864 - 44923 2.5 42 16 Tu 1 . + CDS 45011 - 46348 1636 ## COG2252 Permeases + Term 46361 - 46411 6.6 - Term 46357 - 46393 5.3 43 17 Op 1 3/0.581 - CDS 46402 - 46968 744 ## COG0431 Predicted flavoprotein 44 17 Op 2 4/0.290 - CDS 46990 - 47751 544 ## COG2091 Phosphopantetheinyl transferase - Prom 47833 - 47892 6.7 45 18 Op 1 9/0.032 - CDS 47896 - 48855 774 ## COG0583 Transcriptional regulator 46 18 Op 2 3/0.581 - CDS 48830 - 50005 956 ## COG0477 Permeases of the major facilitator superfamily - Prom 50032 - 50091 2.5 - Term 50096 - 50124 0.6 47 19 Op 1 3/0.581 - CDS 50137 - 51384 1092 ## COG0814 Amino acid permeases - Term 51425 - 51463 3.7 48 19 Op 2 . - CDS 51475 - 52890 1825 ## COG3033 Tryptophanase - Prom 53006 - 53065 3.9 - Term 53372 - 53418 13.3 49 20 Op 1 10/0.000 - CDS 53428 - 54792 1634 ## COG0486 Predicted GTPase - Term 54842 - 54872 3.0 50 20 Op 2 22/0.000 - CDS 54898 - 56544 2024 ## COG0706 Preprotein translocase subunit YidC - Prom 56608 - 56667 3.9 51 20 Op 3 . - CDS 56768 - 57094 229 ## COG0594 RNase P protein component 52 20 Op 4 . - CDS 57144 - 57284 228 ## PROTEIN SUPPORTED gi|15804297|ref|NP_290336.1| 50S ribosomal protein L34 - Prom 57380 - 57439 6.3 53 21 Op 1 16/0.000 + CDS 57891 - 59294 1236 ## COG0593 ATPase involved in DNA replication initiation 54 21 Op 2 18/0.000 + CDS 59299 - 60399 1216 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 55 21 Op 3 9/0.032 + CDS 60399 - 61472 746 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 56 21 Op 4 1/0.935 + CDS 61501 - 63915 3036 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit + Term 64047 - 64089 11.9 + Prom 64049 - 64108 6.6 57 22 Op 1 . + CDS 64155 - 64553 547 ## COG3753 Uncharacterized protein conserved in bacteria + Term 64561 - 64599 2.3 + Prom 64558 - 64617 4.2 58 22 Op 2 . + CDS 64668 - 65480 1215 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 65484 - 65536 12.7 - Term 65469 - 65525 3.2 59 23 Tu 1 . - CDS 65526 - 66182 267 ## EcE24377A_4205 hypothetical protein - Prom 66325 - 66384 4.8 + Prom 66269 - 66328 8.7 60 24 Op 1 1/0.935 + CDS 66460 - 67149 670 ## COG2186 Transcriptional regulators 61 24 Op 2 2/0.871 + CDS 67146 - 68024 549 ## COG3734 2-keto-3-deoxy-galactonokinase 62 24 Op 3 1/0.935 + CDS 68008 - 68625 547 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 63 24 Op 4 7/0.097 + CDS 68622 - 69770 1595 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 64 25 Tu 1 . + CDS 69890 - 71182 1432 ## COG0477 Permeases of the major facilitator superfamily + Term 71193 - 71239 4.0 65 26 Tu 1 . - CDS 71179 - 72243 615 ## COG0644 Dehydrogenases (flavoproteins) + Prom 72260 - 72319 4.6 66 27 Tu 1 . + CDS 72344 - 73558 904 ## JW5860 conserved hypothetical protein 67 28 Tu 1 . - CDS 73560 - 73823 296 ## COG5645 Predicted periplasmic lipoprotein - Prom 74011 - 74070 3.0 68 29 Tu 1 4/0.290 + CDS 74198 - 74611 587 ## COG0071 Molecular chaperone (small heat shock protein) 69 30 Tu 1 1/0.935 + CDS 74723 - 75151 559 ## COG0071 Molecular chaperone (small heat shock protein) + Term 75167 - 75199 5.4 + Prom 75171 - 75230 4.4 70 31 Tu 1 . + CDS 75347 - 77008 1954 ## COG2985 Predicted permease + Term 77016 - 77062 11.3 71 32 Tu 1 . - CDS 77005 - 77721 666 ## COG2188 Transcriptional regulators + Prom 77757 - 77816 3.4 72 33 Tu 1 2/0.871 + CDS 78017 - 79633 1842 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 79697 - 79756 3.5 73 34 Op 1 . + CDS 79875 - 80270 319 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 74 34 Op 2 . + CDS 80270 - 80446 214 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 80449 - 80495 10.0 75 35 Tu 1 . - CDS 80443 - 81336 592 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 81366 - 81425 2.6 + Prom 81292 - 81351 5.0 76 36 Op 1 4/0.290 + CDS 81503 - 83455 1669 ## COG4146 Predicted symporter 77 36 Op 2 . + CDS 83305 - 84549 1069 ## COG3119 Arylsulfatase A and related enzymes + Term 84556 - 84594 4.2 - Term 84544 - 84582 1.2 78 37 Tu 1 . - CDS 84596 - 85006 344 ## B21_03504 hypothetical protein - Prom 85110 - 85169 4.8 + Prom 84987 - 85046 3.6 79 38 Op 1 . + CDS 85153 - 85500 464 ## COG2149 Predicted membrane protein 80 38 Op 2 . + CDS 85490 - 85852 242 ## ECO111_4500 putative inner membrane protein 81 38 Op 3 . + CDS 85849 - 86346 366 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) - Term 86292 - 86341 2.0 82 39 Tu 1 . - CDS 86354 - 87505 1252 ## COG0477 Permeases of the major facilitator superfamily - Prom 87560 - 87619 5.3 - Term 87761 - 87795 7.0 83 40 Tu 1 . - CDS 87818 - 87907 118 ## - Prom 88123 - 88182 5.0 84 41 Op 1 32/0.000 + CDS 88676 - 90364 1773 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 85 41 Op 2 1/0.935 + CDS 90368 - 90658 354 ## COG0440 Acetolactate synthase, small (regulatory) subunit + Term 90681 - 90719 6.0 86 42 Op 1 5/0.258 + CDS 90734 - 91324 785 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 87 42 Op 2 5/0.258 + CDS 91324 - 92826 1216 ## COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific 88 42 Op 3 3/0.581 + CDS 92836 - 94155 1275 ## COG2271 Sugar phosphate permease + Prom 94207 - 94266 2.3 89 43 Tu 1 . + CDS 94293 - 95684 1792 ## COG2271 Sugar phosphate permease + Term 95703 - 95733 3.3 90 44 Tu 1 . - CDS 95730 - 97496 1636 ## COG1001 Adenine deaminase - Prom 97546 - 97605 6.1 + Prom 97481 - 97540 5.8 91 45 Op 1 . + CDS 97659 - 99005 1266 ## COG2252 Permeases 92 45 Op 2 . + CDS 99058 - 99510 394 ## APECO1_2789 hypothetical protein + Prom 99630 - 99689 3.7 93 46 Tu 1 . + CDS 99721 - 100911 1196 ## COG2814 Arabinose efflux permease 94 47 Tu 1 . - CDS 100952 - 101245 261 ## SSON_3614 putative transport protein - Prom 101445 - 101504 5.6 + Prom 101384 - 101443 5.8 95 48 Tu 1 . + CDS 101467 - 102285 784 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Term 102165 - 102221 5.2 96 49 Op 1 8/0.032 - CDS 102289 - 103212 697 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 103247 - 103306 2.3 97 49 Op 2 . - CDS 103323 - 104507 670 ## COG0477 Permeases of the major facilitator superfamily - Prom 104690 - 104749 9.8 98 50 Tu 1 . - CDS 104889 - 105035 62 ## ECB_03541 hypothetical protein - TRNA 105148 - 105238 75.2 # SeC(p) TCA 0 0 + Prom 105331 - 105390 8.2 99 51 Op 1 3/0.581 + CDS 105531 - 106913 1222 ## COG2211 Na+/melibiose symporter and related transporters 100 51 Op 2 . + CDS 106923 - 109241 2197 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Term 109056 - 109093 -0.3 101 52 Tu 1 . - CDS 109294 - 111003 1387 ## LF82_3356 uncharacterized protein yich - Prom 111029 - 111088 1.8 102 53 Tu 1 . - CDS 111124 - 112515 1749 ## COG2233 Xanthine/uracil permeases - Prom 112539 - 112598 4.8 + Prom 112604 - 112663 7.0 103 54 Tu 1 . + CDS 112795 - 114000 1398 ## COG0786 Na+/glutamate symporter + Term 114143 - 114173 -1.0 - Term 114031 - 114068 2.1 104 55 Op 1 4/0.290 - CDS 114166 - 116247 2052 ## COG1200 RecG-like helicase 105 55 Op 2 5/0.258 - CDS 116253 - 116942 646 ## COG0566 rRNA methylases 106 55 Op 3 18/0.000 - CDS 116949 - 119057 2091 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 107 55 Op 4 25/0.000 - CDS 119076 - 119351 509 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 108 55 Op 5 . - CDS 119406 - 120029 553 ## COG0194 Guanylate kinase - Prom 120070 - 120129 4.6 + Prom 120030 - 120089 2.0 109 56 Tu 1 . + CDS 120287 - 121969 990 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Term 121909 - 121946 5.3 110 57 Tu 1 . - CDS 121966 - 122583 885 ## COG2860 Predicted membrane protein - Prom 122750 - 122809 4.9 111 58 Tu 1 . - CDS 122875 - 123699 698 ## JW3620 DNA-damage-inducible protein - Prom 123759 - 123818 3.9 112 59 Tu 1 . - CDS 123921 - 124784 1096 ## COG1561 Uncharacterized stress-induced protein - Prom 124812 - 124871 5.6 + Prom 124822 - 124881 4.7 113 60 Op 1 6/0.194 + CDS 124911 - 125627 838 ## COG0689 RNase PH + Term 125636 - 125663 0.1 114 60 Op 2 . + CDS 125692 - 126333 780 ## COG0461 Orotate phosphoribosyltransferase + Term 126341 - 126378 7.8 - Term 126329 - 126364 7.4 115 61 Tu 1 . - CDS 126370 - 126966 684 ## COG1309 Transcriptional regulator - Term 126967 - 127002 -0.5 116 62 Op 1 5/0.258 - CDS 127073 - 127531 630 ## COG0756 dUTPase 117 62 Op 2 . - CDS 127509 - 128729 1129 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 128760 - 128819 2.2 + Prom 128646 - 128705 2.4 118 63 Tu 1 . + CDS 128901 - 129569 461 ## COG2003 DNA repair proteins + Prom 129587 - 129646 3.4 119 64 Op 1 16/0.000 + CDS 129786 - 130022 403 ## PROTEIN SUPPORTED gi|15804178|ref|NP_290217.1| 50S ribosomal protein L28 120 64 Op 2 5/0.258 + CDS 130043 - 130210 280 ## PROTEIN SUPPORTED gi|15804177|ref|NP_290216.1| 50S ribosomal protein L33 + Term 130228 - 130269 9.7 + Prom 130226 - 130285 2.2 121 65 Tu 1 . + CDS 130308 - 131117 836 ## COG0266 Formamidopyrimidine-DNA glycosylase - Term 131106 - 131155 4.2 122 66 Op 1 6/0.194 - CDS 131156 - 131635 388 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 123 66 Op 2 . - CDS 131643 - 132920 1095 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase - Prom 133123 - 133182 9.4 + Prom 133102 - 133161 10.2 124 67 Op 1 5/0.258 + CDS 133363 - 134397 409 ## COG0859 ADP-heptose:LPS heptosyltransferase 125 67 Op 2 . + CDS 134394 - 135518 660 ## COG0438 Glycosyltransferase 126 67 Op 3 . + CDS 135511 - 136308 459 ## EFER_3921 kinase that phosphorylates core heptose of lipopolysaccharide 127 67 Op 4 4/0.290 + CDS 136341 - 137321 159 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 128 67 Op 5 4/0.290 + CDS 137335 - 138414 446 ## COG0438 Glycosyltransferase 129 67 Op 6 5/0.258 + CDS 138414 - 139433 357 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases + Prom 139511 - 139570 3.1 130 68 Op 1 . + CDS 139597 - 140613 270 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 131 68 Op 2 . + CDS 140631 - 141329 378 ## EFER_3914 lipopolysaccharide core biosynthesis protein 132 68 Op 3 . + CDS 141401 - 142210 272 ## EFER_3913 lipopolysaccharide core biosynthesis protein 133 68 Op 4 . + CDS 142263 - 143405 469 ## COG0438 Glycosyltransferase + Term 143420 - 143469 11.3 - Term 143413 - 143452 7.8 134 69 Op 1 6/0.194 - CDS 143460 - 144677 430 ## COG3307 Lipid A core - O-antigen ligase and related enzymes 135 69 Op 2 11/0.000 - CDS 144716 - 145672 897 ## COG0859 ADP-heptose:LPS heptosyltransferase 136 69 Op 3 6/0.194 - CDS 145676 - 146722 1004 ## COG0859 ADP-heptose:LPS heptosyltransferase 137 69 Op 4 . - CDS 146802 - 147782 1008 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 147911 - 147970 2.6 + Prom 147853 - 147912 3.9 138 70 Op 1 9/0.032 + CDS 147996 - 149192 1590 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 139 70 Op 2 5/0.258 + CDS 149202 - 150227 1066 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 150237 - 150267 3.0 + Prom 150237 - 150296 5.7 140 71 Tu 1 . + CDS 150469 - 151500 535 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Term 151444 - 151485 -0.5 141 72 Op 1 3/0.581 - CDS 151487 - 152446 764 ## COG2861 Uncharacterized protein conserved in bacteria 142 72 Op 2 4/0.290 - CDS 152450 - 153709 1334 ## COG4942 Membrane-bound metallopeptidase 143 72 Op 3 . - CDS 153743 - 155287 1755 ## COG0696 Phosphoglyceromutase - Prom 155318 - 155377 4.2 + Prom 155433 - 155492 5.1 144 73 Tu 1 . + CDS 155532 - 155963 429 ## COG0607 Rhodanese-related sulfurtransferase + Prom 155974 - 156033 2.4 145 74 Op 1 9/0.032 + CDS 156105 - 156356 317 ## COG0695 Glutaredoxin and related proteins 146 74 Op 2 7/0.097 + CDS 156419 - 156886 529 ## COG1952 Preprotein translocase subunit SecB 147 74 Op 3 6/0.194 + CDS 156886 - 157905 1075 ## COG0240 Glycerol-3-phosphate dehydrogenase + Term 157931 - 157972 6.7 148 75 Tu 1 . + CDS 157985 - 158806 886 ## COG1045 Serine acetyltransferase 149 76 Tu 1 . - CDS 158859 - 159332 426 ## COG0219 Predicted rRNA methylase (SpoU class) Predicted protein(s) >gi|223713513|gb|ACDM01000085.1| GENE 1 293 - 985 567 230 aa, chain + ## HITS:1 COG:ZyieP KEGG:ns NR:ns ## COG: ZyieP COG2186 # Protein_GI_number: 15804355 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 EDL933 # 1 230 1 230 230 461 100.0 1e-130 MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELGEQFGVSRTAVREAVKT LTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQVIDHFLVMRICLEPQACL LAATVGTAEQKAHLNTLMAEMAALKENFRRERWIEVDMAWHEHIYEMSANPFLTSFASLF HSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAFKACQALLRSPDK >gi|223713513|gb|ACDM01000085.1| GENE 2 1008 - 2435 847 475 aa, chain + ## HITS:1 COG:yieO KEGG:ns NR:ns ## COG: yieO COG0477 # Protein_GI_number: 16131622 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 475 1 475 475 831 100.0 0 MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVA MLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVFRVIQGIGGAMMMPVA RLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATWHWIFLINIPIGIAGLL YARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELFGEKIVASWIALTVIVTSIGLLL LYILHARRTPNPLISLDLFKTRTFSIGIVGNIATRLGTGCVPFLMPLMLQVGFGYQAFIA GCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGITVIIGLMIAQFSLQSPAMAIWMLILP LFILGMAMSTQFTAMNTITLADLTDDNASSGNSVLAVTQQLSISLGVAVSAAVLRVYEGM EGTTTVEQFHYTFITMGIITVASAAMFMLLKTTDGNNLIKRQRKSKPNRVPSESE >gi|223713513|gb|ACDM01000085.1| GENE 3 2401 - 3384 850 327 aa, chain - ## HITS:1 COG:ECs4695 KEGG:ns NR:ns ## COG: ECs4695 COG1609 # Protein_GI_number: 15833949 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 327 4 330 330 656 100.0 0 MKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIG MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC TETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIACI TGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVF TGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDV LIHRITQPTLQQQRLQLTPILMERGSA >gi|223713513|gb|ACDM01000085.1| GENE 4 3397 - 4341 799 314 aa, chain - ## HITS:1 COG:ECs4694 KEGG:ns NR:ns ## COG: ECs4694 COG0524 # Protein_GI_number: 15833948 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 6 314 1 309 309 529 100.0 1e-150 MDIPNMQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSG ANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAG ANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPD ELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNG EGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV PWREEIDAFLDRQR >gi|223713513|gb|ACDM01000085.1| GENE 5 4452 - 5342 1179 296 aa, chain - ## HITS:1 COG:ECs4693 KEGG:ns NR:ns ## COG: ECs4693 COG1879 # Protein_GI_number: 15833947 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 296 1 296 296 493 100.0 1e-139 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN VLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ >gi|223713513|gb|ACDM01000085.1| GENE 6 5367 - 6332 1267 321 aa, chain - ## HITS:1 COG:ECs4692 KEGG:ns NR:ns ## COG: ECs4692 COG1172 # Protein_GI_number: 15833946 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 481 100.0 1e-135 MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMA VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA KGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMG IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY YQMIVKAVVILLAVLVDNKKQ >gi|223713513|gb|ACDM01000085.1| GENE 7 6337 - 7842 1798 501 aa, chain - ## HITS:1 COG:rbsA KEGG:ns NR:ns ## COG: rbsA COG1129 # Protein_GI_number: 16131617 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Escherichia coli K12 # 1 501 1 501 501 967 100.0 0 MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGT LLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYA EADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL FRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGR KLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG ALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS RAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILD EPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTRE QATQEVLMAAAVGKLNRVNQE >gi|223713513|gb|ACDM01000085.1| GENE 8 7850 - 8269 423 139 aa, chain - ## HITS:1 COG:rbsD KEGG:ns NR:ns ## COG: rbsD COG1869 # Protein_GI_number: 16131616 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Escherichia coli K12 # 1 139 13 151 151 256 100.0 8e-69 MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN EMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI RSGECSPYANIILCAGVTF >gi|223713513|gb|ACDM01000085.1| GENE 9 8436 - 10304 1764 622 aa, chain - ## HITS:1 COG:ECs4689 KEGG:ns NR:ns ## COG: ECs4689 COG3158 # Protein_GI_number: 15833943 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Escherichia coli O157:H7 # 1 622 1 622 622 1177 99.0 0 MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLL IFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVIT PAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLIL AGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK FPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLIIAALATVIA SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWMLYVAVVIVIVSFEHS SNLAAAYGIAVTGTMVLTSILSTTVARQNWHWNKYFVALILIAFLCVDIPLFTANLDKLL SGGWLPLSLGTVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM SRAINVIPFALMHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASY GWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLILGKRPWYLRLRGKLYLLLQRNAL RAPDQFEIPPNRVIELGTQVEI >gi|223713513|gb|ACDM01000085.1| GENE 10 10527 - 12023 1445 498 aa, chain + ## HITS:1 COG:yieN KEGG:ns NR:ns ## COG: yieN COG0714 # Protein_GI_number: 16131614 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Escherichia coli K12 # 1 498 9 506 506 947 100.0 0 MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK FAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLD KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDV LMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIRLGGIFSRRQQYQLPVNVTAS TLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHL VVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR IEASLQDVGAQIRQAQQC >gi|223713513|gb|ACDM01000085.1| GENE 11 12017 - 13468 1122 483 aa, chain + ## HITS:1 COG:ECs4687 KEGG:ns NR:ns ## COG: ECs4687 COG2425 # Protein_GI_number: 15833941 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Escherichia coli O157:H7 # 1 473 1 473 483 890 99.0 0 MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKAAITDDVPRWREALRSR LKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRLNSPWAEQARQLVDANSTI TSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQERMTLSGQLEPILADNNTAA GRLWDMSAGQLKRGDYQLIVKYGEFLNEHPELKRLAEQLGRSREAKSIPRNDAQMETFRT MVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGESW REKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYI MLFSTEIVRYELSGPQGIEQAIRFLSQQFRGGTDLASCFRAIMERLQSREWFDADAVVIS DFIAQRLPDDVTSKVKELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRR WRR >gi|223713513|gb|ACDM01000085.1| GENE 12 13473 - 14465 1200 330 aa, chain - ## HITS:1 COG:asnA KEGG:ns NR:ns ## COG: asnA COG2502 # Protein_GI_number: 16131612 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Escherichia coli K12 # 1 330 1 330 330 657 100.0 0 MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVK ALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWE RVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIHFVHSQELLSRYPDL DAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWN PVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRL TMLLLQLPHIGQVQCGVWPAAVRESVPSLL >gi|223713513|gb|ACDM01000085.1| GENE 13 14617 - 15075 498 152 aa, chain + ## HITS:1 COG:ECs4685 KEGG:ns NR:ns ## COG: ECs4685 COG1522 # Protein_GI_number: 15833939 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 152 1 152 152 296 100.0 8e-81 MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVS PKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQ HVLINKIQTIDEIQSTETLIVLQNPIMRTIKP >gi|223713513|gb|ACDM01000085.1| GENE 14 15165 - 15608 573 147 aa, chain + ## HITS:1 COG:mioC KEGG:ns NR:ns ## COG: mioC COG0716 # Protein_GI_number: 16131610 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli K12 # 1 147 1 147 147 280 100.0 5e-76 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVISSTHGAG DIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGET LKINILDHDIPEDPAEEWLGSWVNLLK >gi|223713513|gb|ACDM01000085.1| GENE 15 15987 - 17876 1955 629 aa, chain + ## HITS:1 COG:gidA KEGG:ns NR:ns ## COG: gidA COG0445 # Protein_GI_number: 16131609 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Escherichia coli K12 # 1 629 1 629 629 1248 100.0 0 MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS IPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV PCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPE GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRL KSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAE QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ ASRISGVTPAAISILLVWLKKQGMLRRSA >gi|223713513|gb|ACDM01000085.1| GENE 16 17940 - 18563 559 207 aa, chain + ## HITS:1 COG:ECs4682 KEGG:ns NR:ns ## COG: ECs4682 COG0357 # Protein_GI_number: 15833936 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Escherichia coli O157:H7 # 1 207 1 207 207 411 100.0 1e-115 MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPV QSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEY QVESVVKLQVPALDGERHLVVIKANKI >gi|223713513|gb|ACDM01000085.1| GENE 17 19180 - 19560 192 126 aa, chain + ## HITS:1 COG:ECs4681 KEGG:ns NR:ns ## COG: ECs4681 COG3312 # Protein_GI_number: 15833935 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit I # Organism: Escherichia coli O157:H7 # 1 126 5 130 130 156 99.0 7e-39 MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGGLAVFLPNVLFMIFAWR HQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALVVLKAVFLPLIVTWVLVLVVQILAPA VINNKG >gi|223713513|gb|ACDM01000085.1| GENE 18 19569 - 20384 820 271 aa, chain + ## HITS:1 COG:STM3871 KEGG:ns NR:ns ## COG: STM3871 COG0356 # Protein_GI_number: 16767155 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Salmonella typhimurium LT2 # 1 271 1 271 271 467 96.0 1e-131 MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINIDSMFFSVVLGLLFLVLF RSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIAPLALTIFVWVFLMNLMDL LPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTL QPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVP WAIFHILIITLQAFIFMVLTIVYLSMASEEH >gi|223713513|gb|ACDM01000085.1| GENE 19 20431 - 20670 374 79 aa, chain + ## HITS:1 COG:BU003 KEGG:ns NR:ns ## COG: BU003 COG0636 # Protein_GI_number: 15616633 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Buchnera sp. APS # 1 79 1 79 79 97 83.0 5e-21 MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLV DAIPMIAVGLGLYVMFAVA >gi|223713513|gb|ACDM01000085.1| GENE 20 20732 - 21202 567 156 aa, chain + ## HITS:1 COG:ECs4678 KEGG:ns NR:ns ## COG: ECs4678 COG0711 # Protein_GI_number: 15833932 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 201 100.0 5e-52 MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKAS ATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL RKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL >gi|223713513|gb|ACDM01000085.1| GENE 21 21217 - 21750 587 177 aa, chain + ## HITS:1 COG:ECs4677 KEGG:ns NR:ns ## COG: ECs4677 COG0712 # Protein_GI_number: 15833931 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Escherichia coli O157:H7 # 1 177 1 177 177 300 100.0 8e-82 MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAES FIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQ QLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERLADVLQS >gi|223713513|gb|ACDM01000085.1| GENE 22 21763 - 23304 1803 513 aa, chain + ## HITS:1 COG:ECs4676 KEGG:ns NR:ns ## COG: ECs4676 COG0056 # Protein_GI_number: 15833930 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 513 1 513 513 986 100.0 0 MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP LDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLER AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF NAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ LDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA PLMQEINQTGGYNDEIEGKLKGILDSFKATQSW >gi|223713513|gb|ACDM01000085.1| GENE 23 23355 - 24218 1011 287 aa, chain + ## HITS:1 COG:ECs4675 KEGG:ns NR:ns ## COG: ECs4675 COG0224 # Protein_GI_number: 15833929 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Escherichia coli O157:H7 # 1 287 1 287 287 555 100.0 1e-158 MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGN LEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGS KGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMS QVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQ AARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV >gi|223713513|gb|ACDM01000085.1| GENE 24 24245 - 25627 1696 460 aa, chain + ## HITS:1 COG:ECs4674 KEGG:ns NR:ns ## COG: ECs4674 COG0055 # Protein_GI_number: 15833928 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Escherichia coli O157:H7 # 1 460 1 460 460 890 100.0 0 MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSS DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEEL SNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV GERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVS LKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL >gi|223713513|gb|ACDM01000085.1| GENE 25 25648 - 26067 486 139 aa, chain + ## HITS:1 COG:atpC KEGG:ns NR:ns ## COG: atpC COG0355 # Protein_GI_number: 16131599 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Escherichia coli K12 # 1 139 1 139 139 246 100.0 1e-65 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHE EFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASA ELAKAIAQLRVIELTKKAM >gi|223713513|gb|ACDM01000085.1| GENE 26 26420 - 27790 1693 456 aa, chain + ## HITS:1 COG:ECs4672 KEGG:ns NR:ns ## COG: ECs4672 COG1207 # Protein_GI_number: 15833926 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Escherichia coli O157:H7 # 1 456 1 456 456 890 100.0 0 MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGD LLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDA KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADM KRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ SEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKN SVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT IAAGTTVTRNVGENALAISRVPQTQKEGWRRPVKKK >gi|223713513|gb|ACDM01000085.1| GENE 27 27952 - 29781 2335 609 aa, chain + ## HITS:1 COG:glmS KEGG:ns NR:ns ## COG: glmS COG0449 # Protein_GI_number: 16131597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Escherichia coli K12 # 1 609 1 609 609 1196 100.0 0 MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL SRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIA LEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRAR GGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPR NLAKSVTVE >gi|223713513|gb|ACDM01000085.1| GENE 28 30095 - 31135 1241 346 aa, chain + ## HITS:1 COG:pstS KEGG:ns NR:ns ## COG: pstS COG0226 # Protein_GI_number: 16131596 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 346 1 346 346 632 100.0 0 MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKWADTYQKETGNKVNYQG IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVL DGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEE WKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGK PVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLK FFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY >gi|223713513|gb|ACDM01000085.1| GENE 29 31222 - 32181 1279 319 aa, chain + ## HITS:1 COG:ECs4663 KEGG:ns NR:ns ## COG: ECs4663 COG0573 # Protein_GI_number: 15833917 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Escherichia coli O157:H7 # 1 319 1 319 319 533 99.0 1e-151 MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTK EWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLA AIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGALFSGSAFGIGILAAGVILAIM IIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALG ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFVITFI VLAASKFMIMRLAKNEGAR >gi|223713513|gb|ACDM01000085.1| GENE 30 32181 - 33071 1151 296 aa, chain + ## HITS:1 COG:pstA KEGG:ns NR:ns ## COG: pstA COG0581 # Protein_GI_number: 16131594 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Escherichia coli K12 # 1 296 1 296 296 507 100.0 1e-143 MAMVEMQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITRGIDGM SLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGIMAGIYLAEYGRKSWLAEV IRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIALALLQVPIVIRTTENMLKLVP YSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAIARIAGETAPLLFTALSNQFWST DMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIITLCVLLLNILARVVFAKNKHG >gi|223713513|gb|ACDM01000085.1| GENE 31 33254 - 34027 345 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 11 252 2 239 245 137 36 3e-31 MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMF ELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK LSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP CSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDHTAFMYLGELIEFSNTDDLF TKPAKKQTEDYITGRYG >gi|223713513|gb|ACDM01000085.1| GENE 32 34042 - 34767 907 241 aa, chain + ## HITS:1 COG:phoU KEGG:ns NR:ns ## COG: phoU COG0704 # Protein_GI_number: 16131592 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Escherichia coli K12 # 1 241 1 241 241 449 100.0 1e-126 MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMHNQDSDLAKRVIEGDKN VNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERIGDVADKICRTALEKFSQQ HQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYREDKKVDQEYEGIVRQLMTYMM EDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRHVGGDELDKLLAGKDSD K >gi|223713513|gb|ACDM01000085.1| GENE 33 35053 - 35889 635 278 aa, chain + ## HITS:1 COG:bglG KEGG:ns NR:ns ## COG: bglG COG3711 # Protein_GI_number: 16131591 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli K12 # 1 278 1 278 278 524 100.0 1e-149 MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSSGIEKEYALSSHELNGR LSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHCQFAIKRFQQNVLLPNPLL WDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEVGFIAMHLVSAQMSGNMEDVAGVTQLM REMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRILEHASINDSDESLQQAVKQNYPQA WQCAERIAIFIGLQYQRKISPAEIMFLAINIERVRKEH >gi|223713513|gb|ACDM01000085.1| GENE 34 36023 - 37900 1335 625 aa, chain + ## HITS:1 COG:bglF_2 KEGG:ns NR:ns ## COG: bglF_2 COG1263 # Protein_GI_number: 16131590 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 91 451 1 361 361 686 100.0 0 MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQ VVIGNHVADVFLAVNSVAGLDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGI LKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGGNPFTAMVIGGA LVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPS AIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIF VMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAA LTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIP STGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGIC SPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDD GVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNS DDFTDVLPHGTAQISAGEPLLSIIR >gi|223713513|gb|ACDM01000085.1| GENE 35 37919 - 39331 1165 470 aa, chain + ## HITS:1 COG:bglB KEGG:ns NR:ns ## COG: bglB COG2723 # Protein_GI_number: 16131589 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1 470 1 470 470 993 99.0 0 MKAFPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAID FYHRYPEDIALFAEMGFTCLRISIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKP LVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQHKVALWLTFNEINMSLHAP FTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLLPEAKIGNMLLGGLVYPLTCQPQD MLQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVYFISFSYY MTGCVSHDESINKNAQGNILNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQKPLFIV ENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIADGVDIMGYTSWGPIDLVSASHSQ MSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRGLSLKKITIKAP >gi|223713513|gb|ACDM01000085.1| GENE 36 39400 - 41016 1537 538 aa, chain + ## HITS:1 COG:yieC KEGG:ns NR:ns ## COG: yieC COG4580 # Protein_GI_number: 16131588 # Func_class: G Carbohydrate transport and metabolism # Function: Maltoporin (phage lambda and maltose receptor) # Organism: Escherichia coli K12 # 1 538 1 538 538 1016 100.0 0 MFRRNLITSAILLMAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKKKYT PATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDFSKFVK DEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNENGKRVDA VVMMDGNVGQQYSTGWFGDNAGGENYMQFSDMYVTTKGFLPFAPEADFWVGKHGAPKIEI QMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQINTNTIDLRYK DIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSLTQKFDKGGFNEFS FLVANNSIASNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGEAYIGDHFIVANAIVY SFGNDIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYFTQQNKDANSNKFNESGY KTTLFHTFKVNTSMLTSRPEIRFYATYIKALENELDGFTFEDNKDDQFAVGAQAEIWW >gi|223713513|gb|ACDM01000085.1| GENE 37 41043 - 42212 1144 389 aa, chain + ## HITS:1 COG:yieL KEGG:ns NR:ns ## COG: yieL COG2382 # Protein_GI_number: 16131587 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Escherichia coli K12 # 1 389 12 400 400 766 100.0 0 MNIKIAALTLAIASGISAQWAIAADMPASPAPTIPVKQYVTQVNADNSVTFRYFAPGAKN VSVVVGVPVPDNIHPMTKDEAGVWSWRTPILKGNLYEYFFNVDGVRSIDTGTAMTNPQRQ VNSSMILVPGSYLDTRSVAHGDLIAITYHSNALQSERQMYVWTPPGYTGMGEPLPVLYFY HGFGDTGRSAIDQGRIPQIMDNLLAEGKIKPMLVVIPDTETDAKGIIPEDFVPQERRKVF YPLNAKAADRELMNDIIPLISKRFNVRKDADGRALAGLSQGGYQALVSGMNHLESFGWLA TFSGVTTTTVPDEGVAARLNDPAAINQQLRNFTVVVGDKDVVTGKDIAGLKTELEQKKIN FDYQEYPGLNHEMDVWRPAYAAFVQKLFK >gi|223713513|gb|ACDM01000085.1| GENE 38 42227 - 42949 801 240 aa, chain + ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 232 1 209 213 434 100.0 1e-122 MKLIITEDYQEMSRVAAHHLLGYMSKTRRVNLAITAGSTPKGMYEYLTTLVKGKPWYDNC YFYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKEENIQKLTIDNYREHDQKLAREGGLD LVVLGLGADGHFCGNLPNTTHFHEQTVEFPIQGEMVDIVAHGELGGDFSLVPDSYVTMGP KSIMAAKNLLIIVSGAGKAQALKNVLQGPVTEDVPASVLQLHPSLMVIADKAAAAELALG >gi|223713513|gb|ACDM01000085.1| GENE 39 43011 - 43598 250 195 aa, chain - ## HITS:1 COG:yieJ KEGG:ns NR:ns ## COG: yieJ COG3196 # Protein_GI_number: 16131585 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 195 1 195 195 376 100.0 1e-104 MTQNIRPLPQFKYHPKPLETGAFEQDKTVECDCCEQQTSVYYSGPFYCVDEVEHLCPWCI ADGSAAEKFAGSFQDDASIEGVEFEYDEEDEFAGIKNTYPDEMLKELVERTPGYHGWQQE FWLAHCGDFCVFIGYVGWNDIKDRLDEFANLEEDCENFGIRNSDLAKCLQKGGHCQGYLF RCLHCGKLRLWGDFS >gi|223713513|gb|ACDM01000085.1| GENE 40 43647 - 44114 237 155 aa, chain - ## HITS:1 COG:no KEGG:JW3694 NR:ns ## KEGG: JW3694 # Name: yieI # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 155 1 155 155 261 100.0 5e-69 MSVSRRVIHHGLYFAVLGPLIGVLFLVLYIFFAKEPLVLWVIIHPIFLLLSITTGAIPAL LTGVMVACLPEKIGSQKRYRCLAGGIGGVVITEIYCAVIVHIKGMASSELFENILSGDSL VVRIIPALLAGVVMSRIITRLPGLDISCPETDSLS >gi|223713513|gb|ACDM01000085.1| GENE 41 44181 - 44846 640 221 aa, chain - ## HITS:1 COG:yieH KEGG:ns NR:ns ## COG: yieH COG0637 # Protein_GI_number: 16131583 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli K12 # 1 221 1 221 221 468 100.0 1e-132 MSRIEAVFFDCDGTLVDSEVICSRAYVTMFQEFGITLDPEEVFKRFKGVKLYEIIDIVSL EHGVTLAKTEAEHVYRAEVARLFDSELEAIEGAGALLSAITAPMCVVSNGPNNKMQHSMG KLNMLHYFPDKLFSGYDIQRWKPDPALMFHAAKAMNVNVENCILVDDSVAGAQSGIDAGM EVFYFCADPHNKPIVHPKVTTFTHLSQLPELWKARGWDITA >gi|223713513|gb|ACDM01000085.1| GENE 42 45011 - 46348 1636 445 aa, chain + ## HITS:1 COG:STM3851 KEGG:ns NR:ns ## COG: STM3851 COG2252 # Protein_GI_number: 16767135 # Func_class: R General function prediction only # Function: Permeases # Organism: Salmonella typhimurium LT2 # 1 445 43 487 487 733 96.0 0 MSHQHTTQTSGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDT SAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWG AIGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVSIGNL TSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVV GHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSI SSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLVIFLSPLAGMVPGYAAAG ALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGR LRDLSPCVIIVALLFILKIVFIDAH >gi|223713513|gb|ACDM01000085.1| GENE 43 46402 - 46968 744 188 aa, chain - ## HITS:1 COG:ECs4650 KEGG:ns NR:ns ## COG: ECs4650 COG0431 # Protein_GI_number: 15833904 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 364 100.0 1e-101 MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFP ATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGV IGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFG EFIQRVKI >gi|223713513|gb|ACDM01000085.1| GENE 44 46990 - 47751 544 253 aa, chain - ## HITS:1 COG:yieE KEGG:ns NR:ns ## COG: yieE COG2091 # Protein_GI_number: 16131580 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Escherichia coli K12 # 1 253 1 253 253 518 100.0 1e-147 MERKMATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRGLLAELMFMLYGI GELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLDMELQRATRGFHSPH APDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLNDDPRDLQLLPIAGRLK CAHVNHVEALCDAEDVLVWSVAVTPTIEKLSVWELDGKHGWKSLPDIHSRANNPTSRMMR FAQLSTVKAFSPN >gi|223713513|gb|ACDM01000085.1| GENE 45 47896 - 48855 774 319 aa, chain - ## HITS:1 COG:yidZ KEGG:ns NR:ns ## COG: yidZ COG0583 # Protein_GI_number: 16131579 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 319 1 319 319 588 100.0 1e-168 MKKSITTLDLNLLLCLQLLMQERSVTKAAKRINVTPSAVSKSLAKLRAWFDDPLFVNSPL GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKQIY QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP CVWLRKDHPALHQTWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH NPKIVWLRETIKNLYASMA >gi|223713513|gb|ACDM01000085.1| GENE 46 48830 - 50005 956 391 aa, chain - ## HITS:1 COG:yidY KEGG:ns NR:ns ## COG: yidY COG0477 # Protein_GI_number: 16131578 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 391 1 391 391 661 100.0 0 MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGK VADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILRDTL DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKE TRPAAPAASDKPRENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGEY ATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQVLFLAAGITLAVSPSHAVSLFGITL ICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVVGIGAWNMLIGI LIACSIVSLLLIMFVAPGRPVAAHEEIHHHA >gi|223713513|gb|ACDM01000085.1| GENE 47 50137 - 51384 1092 415 aa, chain - ## HITS:1 COG:tnaB KEGG:ns NR:ns ## COG: tnaB COG0814 # Protein_GI_number: 16131577 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1 415 1 415 415 733 100.0 0 MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLL LEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL GYHANPRIVGICTAIFVASVLWLSSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILR DATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVI YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFF GVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWA VIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKFG >gi|223713513|gb|ACDM01000085.1| GENE 48 51475 - 52890 1825 471 aa, chain - ## HITS:1 COG:tnaA KEGG:ns NR:ns ## COG: tnaA COG3033 # Protein_GI_number: 16131576 # Func_class: E Amino acid transport and metabolism # Function: Tryptophanase # Organism: Escherichia coli K12 # 1 471 6 476 476 973 100.0 0 MENFKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVT QSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ REAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV >gi|223713513|gb|ACDM01000085.1| GENE 49 53428 - 54792 1634 454 aa, chain - ## HITS:1 COG:thdF KEGG:ns NR:ns ## COG: thdF COG0486 # Protein_GI_number: 16131574 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 454 1 454 454 862 100.0 0 MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSVLD QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE IDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR TGEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLA EELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK >gi|223713513|gb|ACDM01000085.1| GENE 50 54898 - 56544 2024 548 aa, chain - ## HITS:1 COG:yidC KEGG:ns NR:ns ## COG: yidC COG0706 # Protein_GI_number: 16131573 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Escherichia coli K12 # 1 548 1 548 548 1064 100.0 0 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL ISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP DNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNV QNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD NENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT GAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPL GGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQK MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL HSREKKKS >gi|223713513|gb|ACDM01000085.1| GENE 51 56768 - 57094 229 108 aa, chain - ## HITS:1 COG:rnpA KEGG:ns NR:ns ## COG: rnpA COG0594 # Protein_GI_number: 16131572 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Escherichia coli K12 # 1 108 12 119 119 190 99.0 5e-49 MLTPSQFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVRRAHERNRIKRLTRE SFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRLARGS >gi|223713513|gb|ACDM01000085.1| GENE 52 57144 - 57284 228 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15804297|ref|NP_290336.1| 50S ribosomal protein L34 [Escherichia coli O157:H7 EDL933] # 1 46 1 46 46 92 100 1e-17 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK >gi|223713513|gb|ACDM01000085.1| GENE 53 57891 - 59294 1236 467 aa, chain + ## HITS:1 COG:dnaA KEGG:ns NR:ns ## COG: dnaA COG0593 # Protein_GI_number: 16131570 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Escherichia coli K12 # 1 467 1 467 467 931 100.0 0 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNV PAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTH LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE TRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVR EALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNH SLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS >gi|223713513|gb|ACDM01000085.1| GENE 54 59299 - 60399 1216 366 aa, chain + ## HITS:1 COG:ECs4636 KEGG:ns NR:ns ## COG: ECs4636 COG0592 # Protein_GI_number: 15833890 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Escherichia coli O157:H7 # 1 366 1 366 366 729 100.0 0 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV VMPMRL >gi|223713513|gb|ACDM01000085.1| GENE 55 60399 - 61472 746 357 aa, chain + ## HITS:1 COG:ECs4635 KEGG:ns NR:ns ## COG: ECs4635 COG1195 # Protein_GI_number: 15833889 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Escherichia coli O157:H7 # 1 357 1 357 357 712 100.0 0 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD >gi|223713513|gb|ACDM01000085.1| GENE 56 61501 - 63915 3036 804 aa, chain + ## HITS:1 COG:ECs4634 KEGG:ns NR:ns ## COG: ECs4634 COG0187 # Protein_GI_number: 15833888 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Escherichia coli O157:H7 # 1 804 1 804 804 1588 100.0 0 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL MGDAVEPRRAFIEENALKAANIDI >gi|223713513|gb|ACDM01000085.1| GENE 57 64155 - 64553 547 132 aa, chain + ## HITS:1 COG:ECs4633 KEGG:ns NR:ns ## COG: ECs4633 COG3753 # Protein_GI_number: 15833887 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 132 4 135 135 214 98.0 3e-56 MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQGNQS VSGEQLESALGTNAVSDLGQKLGVDTSTASILLAEQLPKIIDALSPQGEVSPQANNDLLS AGMELLKGKLFR >gi|223713513|gb|ACDM01000085.1| GENE 58 64668 - 65480 1215 270 aa, chain + ## HITS:1 COG:yidA KEGG:ns NR:ns ## COG: yidA COG0561 # Protein_GI_number: 16131565 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1 270 1 270 270 525 100.0 1e-149 MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANR DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTV LKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAMDNA IPSVKEVANFVTKSNLEDGVAFAIEKYVLN >gi|223713513|gb|ACDM01000085.1| GENE 59 65526 - 66182 267 218 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_4205 NR:ns ## KEGG: EcE24377A_4205 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 218 36 253 253 442 99.0 1e-123 MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYY YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ >gi|223713513|gb|ACDM01000085.1| GENE 60 66460 - 67149 670 229 aa, chain + ## HITS:1 COG:STM3830 KEGG:ns NR:ns ## COG: STM3830 COG2186 # Protein_GI_number: 16767115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 409 94.0 1e-114 MTLNKTDRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFRSLMAKRLIEM KRYRGAFVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVRNLVEPAIARWAAERATSS DLAQIESALNEMIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLSIAISSLQRAVFERT WMGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT >gi|223713513|gb|ACDM01000085.1| GENE 61 67146 - 68024 549 292 aa, chain + ## HITS:1 COG:dgoK KEGG:ns NR:ns ## COG: dgoK COG3734 # Protein_GI_number: 16131561 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-galactonokinase # Organism: Escherichia coli K12 # 1 292 1 292 292 555 99.0 1e-158 MTARYIAIDWGSTNLRAWLYQGDHCLESRQSEAGVTRLNGKSPAAVLAEVTTDWREEKTL VVMAGMVGSNVGWKVAPYLSVPACFSSIGEQLTSVGDNIWIIPGLCVSHDDNHNVMRGEE TQLIGARALAPSSLYVMPGTHCKWVQADSQQINDFRTVMTGELHHLLLNHSLIGAGLPPQ ENSADAFTAGLERGLNTPAILPQLFEVRASHVLGTLPREQVSEFLSGLLIGAEVASMRDY VAHQHAITLVAGTSLTARYQQAFQAMGCDVTAVAGDTAFQAGIRSIAHAVAN >gi|223713513|gb|ACDM01000085.1| GENE 62 68008 - 68625 547 205 aa, chain + ## HITS:1 COG:RSc2752 KEGG:ns NR:ns ## COG: RSc2752 COG0800 # Protein_GI_number: 17547471 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Ralstonia solanacearum # 1 201 3 203 213 235 62.0 4e-62 MQWQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKA LIGAGTVLKPEQVDALARMSCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEA GAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLY RAGQSVERTAQQAAAFVKAYREAVQ >gi|223713513|gb|ACDM01000085.1| GENE 63 68622 - 69770 1595 382 aa, chain + ## HITS:1 COG:dgoA_2 KEGG:ns NR:ns ## COG: dgoA_2 COG4948 # Protein_GI_number: 16131560 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 382 96 477 477 799 100.0 0 MKITKITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAAVHELGDYLIGQDPSRI NDLWQVMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWV GGDRPADVIDGIKTLREIGFDTFKLNGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEF GLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAEYYPKLAAQTHIPLAAGERMFSR FDFKRVLEAGGISILQPDLSHAGGITECYKIAGMAEAYDVTLAPHCPLGPIALAACLHID FVSYNAVLQEQSMGIHYNKGAELLDFVKNKEDFSMVGGFFKPLTKPGLGVEIDEAKVIEF SKNAPDWRNPLWRHEDNSVAEW >gi|223713513|gb|ACDM01000085.1| GENE 64 69890 - 71182 1432 430 aa, chain + ## HITS:1 COG:dgoT KEGG:ns NR:ns ## COG: dgoT COG0477 # Protein_GI_number: 16131559 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 430 16 445 445 801 100.0 0 MDIPVNAAKPGRRRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAF AWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAP AFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIG IIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHR KLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVA DLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSL VSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYI LLVGDVKRVG >gi|223713513|gb|ACDM01000085.1| GENE 65 71179 - 72243 615 354 aa, chain - ## HITS:1 COG:yidS KEGG:ns NR:ns ## COG: yidS COG0644 # Protein_GI_number: 16131558 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 354 8 361 361 749 100.0 0 MEHFDVAIIGLGPAGSALARKLAGKMQVIALDKKHQCGTEGFSKPCGGLLAPDAQRSFIR DGLTLPVDVIANPQIFSVKTVDVAASLTRNYQRSYININRHAFDLWMKSLIPASVEVYHD SLCRKIWREDDKWHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQW FAEKHPVPFYSCIFDNSITNCYSWSISKDGYFIFGGAYPMKDGQTRFTTLKEKMSAFQFQ FGKTVKSEKCTVLFPSRWQDFVCGKDNAFLIGEAAGFISASSLEGISYALDSTDILRSVL LKQPEKLNTAYWRATRKLRLKLFGKIVKSRCLTAPALRKWIMRSGVAHIPQLKD >gi|223713513|gb|ACDM01000085.1| GENE 66 72344 - 73558 904 404 aa, chain + ## HITS:1 COG:no KEGG:JW5860 NR:ns ## KEGG: JW5860 # Name: yidR # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 404 1 404 404 815 100.0 0 MKQITFAPRNHLLTNTNTWTPDSQWLVFDVRPSGASFTGETIERVNIHTGEVEVIYRASQ GAHVGVVTVHPKSEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTP GVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQKQHPREYS GSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIVELPQ DEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQI AFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVLDNRIACAHAQ SGEVEYLTEHHANSPSADAVVFSPDGQWLAWMEGGQLWITETDR >gi|223713513|gb|ACDM01000085.1| GENE 67 73560 - 73823 296 87 aa, chain - ## HITS:1 COG:ECs4628 KEGG:ns NR:ns ## COG: ECs4628 COG5645 # Protein_GI_number: 15833882 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 1 87 49 135 135 167 98.0 5e-42 MMSHTGGKEGTYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSS VRSRVEKSEANAQATNAVIPPARMPDN >gi|223713513|gb|ACDM01000085.1| GENE 68 74198 - 74611 587 137 aa, chain + ## HITS:1 COG:ECs4627 KEGG:ns NR:ns ## COG: ECs4627 COG0071 # Protein_GI_number: 15833881 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 256 100.0 7e-69 MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESE LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYID LERVIPEAKKPRRIEIN >gi|223713513|gb|ACDM01000085.1| GENE 69 74723 - 75151 559 142 aa, chain + ## HITS:1 COG:ECs4626 KEGG:ns NR:ns ## COG: ECs4626 COG0071 # Protein_GI_number: 15833880 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Escherichia coli O157:H7 # 1 142 3 144 144 275 100.0 2e-74 MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNHYRITLALAGFRQEDLE IQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAENMEVSGATFVNGLLHIDLI RNEPEPIAAQRIAISERPALNS >gi|223713513|gb|ACDM01000085.1| GENE 70 75347 - 77008 1954 553 aa, chain + ## HITS:1 COG:ECs4625 KEGG:ns NR:ns ## COG: ECs4625 COG2985 # Protein_GI_number: 15833879 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 553 9 561 561 985 100.0 0 MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLH VIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLP VVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRV IFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNEN VLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLG NAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIG KLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLIT VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRII TPQLLAVLFWSIG >gi|223713513|gb|ACDM01000085.1| GENE 71 77005 - 77721 666 238 aa, chain - ## HITS:1 COG:yidP KEGG:ns NR:ns ## COG: yidP COG2188 # Protein_GI_number: 16131552 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 238 1 238 238 448 100.0 1e-126 MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLTPVL ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS >gi|223713513|gb|ACDM01000085.1| GENE 72 78017 - 79633 1842 538 aa, chain + ## HITS:1 COG:glvCm_1 KEGG:ns NR:ns ## COG: glvCm_1 COG1263 # Protein_GI_number: 16132269 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 447 88 534 534 852 99.0 0 MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTDPNSLFAQIVHIIEEGG WTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQD AVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDKKLPVFLGIFQGTSYVVIIAF LVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYGQFI FGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHGNSKIFGAVGISLAMYFTAA PENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVG NMGGGLIDQVLPQNWIPMFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGRED AEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDM SQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEAV >gi|223713513|gb|ACDM01000085.1| GENE 73 79875 - 80270 319 131 aa, chain + ## HITS:1 COG:glvG KEGG:ns NR:ns ## COG: glvG COG1486 # Protein_GI_number: 16131551 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1 131 82 212 212 278 100.0 1e-75 MAHIRVGKYPMRELDEKIPLRHGVVGQETCGPGGIAYGMRSIGGVLELVDYMEKYSPNAW MLNYSNPAAIVAEATRRLRPNAKILNICDMPIGIESRMAQIVGLQDRKQMRVRYYGLNHW WSAISRSFRKG >gi|223713513|gb|ACDM01000085.1| GENE 74 80270 - 80446 214 58 aa, chain + ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 1 58 383 440 440 117 100.0 5e-27 MSQQVAVEKLVVDAWEQRSYQHLWQAITLSKTVPSASVAKAILDELLEANKAYWPELR >gi|223713513|gb|ACDM01000085.1| GENE 75 80443 - 81336 592 297 aa, chain - ## HITS:1 COG:yidL KEGG:ns NR:ns ## COG: yidL COG2207 # Protein_GI_number: 16131550 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 297 11 307 307 624 100.0 1e-179 MNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIAN SWVAVYTVQGCGKILLKNGEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMM DIPVGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKD PQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN >gi|223713513|gb|ACDM01000085.1| GENE 76 81503 - 83455 1669 650 aa, chain + ## HITS:1 COG:yidK KEGG:ns NR:ns ## COG: yidK COG4146 # Protein_GI_number: 16131549 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli K12 # 1 565 1 565 571 1021 98.0 0 MNSLQILSFVGFTLLVAVITWWKVRKTDTGSQQGYFLAGRSLKAPVIAASLMLTNLSTEQ LVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLKRGIATIPDFLEERYDKTTRII IDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHGAAIWLLVILLGLAGILYAVI GGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFMQGIEQLTTVHAEKLNSIGGPTD PLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLAEGQKGALLTAVLKMLDPLVLVLPG LIAFHLYQDLPKADMAYPTLVNNVLPVPMVGFFGAVLFGAVISTFNGFLNSASTLFSMGI YRRIINQNAEPQQLVTVGRKFGFFIAIVSVLVAPWIANAPQGLYSWMKQLNGIYNVPLVT IIIMGFFFPRIPALAAKVAMGIGIISYITINYLVKFDFHFLYVLACTFCINVVVMLVIGF IKPRATPFTFKDAFAVDMKPWKNVKIASIGILFAMIGVYAGLAEFGGYGTRWLAMISYFI AAVVIVYLIFDSWRRKVFALIPPTPVHRFVRLHGPDYLPVSTLTSPARGPTTSRQAKTSP LWGATLRMPAITPVTSANGISTVMTISALASVRRSGTLITGSMGRTILAN >gi|223713513|gb|ACDM01000085.1| GENE 77 83305 - 84549 1069 414 aa, chain + ## HITS:1 COG:yidJ KEGG:ns NR:ns ## COG: yidJ COG3119 # Protein_GI_number: 16131548 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1 414 84 497 497 871 100.0 0 MGRYFKDAGYHTCYIGKWHLDGHDYFGTGECPPEWDADYWFDGANYLSELTEKEISLWRN GLNSVEDLQANHIDETFTWAHRISNRAVDFLQQPARADEPFLMVVSYDEPHHPFTCPVEY LEKYADFYYELGEKAQDDLANKPEHHRLWAQAMPSPVGDDGLYHHPLYFACNDFVDDQIG RVINALTPEQRENTWVIYTSDHGEMMGAHKLISKGAAMYDDITRIPLIIRSPQGERRQVD TPVSHIDLLPTMMALADIEKPEILPGENILAVKEPRGVMVEFNRYEIEHDSFGGFIPVRC WVTDDFKLVLNLFTSDELYDRRNDPNEMHNLIDDIRFADVRSKMHDALLDYMDKIRDPFR SYQWSLRPWRKDARPRWMGAFRPRPQDGYSPVVRDYDTGLPTQGVKVEEKKQKF >gi|223713513|gb|ACDM01000085.1| GENE 78 84596 - 85006 344 136 aa, chain - ## HITS:1 COG:no KEGG:B21_03504 NR:ns ## KEGG: B21_03504 # Name: yidI # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 136 14 149 149 217 100.0 1e-55 MLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDV DVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSI LLIFLIFSFLTGGSLV >gi|223713513|gb|ACDM01000085.1| GENE 79 85153 - 85500 464 115 aa, chain + ## HITS:1 COG:ECs4617 KEGG:ns NR:ns ## COG: ECs4617 COG2149 # Protein_GI_number: 15833871 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 115 1 115 115 190 100.0 7e-49 MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLC LFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVLYAG >gi|223713513|gb|ACDM01000085.1| GENE 80 85490 - 85852 242 120 aa, chain + ## HITS:1 COG:no KEGG:ECO111_4500 NR:ns ## KEGG: ECO111_4500 # Name: yidG # Def: putative inner membrane protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 120 1 120 120 221 100.0 8e-57 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA >gi|223713513|gb|ACDM01000085.1| GENE 81 85849 - 86346 366 165 aa, chain + ## HITS:1 COG:yidF KEGG:ns NR:ns ## COG: yidF COG0641 # Protein_GI_number: 16131544 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1 165 1 165 165 343 100.0 7e-95 MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLIPYLEFDDRGDLTAASV TAELWGKFLIALFECWVRADISRISIELFDATLQKWCGSENPQPRCDCQACDWHRLCPHA RQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMELMTMLR >gi|223713513|gb|ACDM01000085.1| GENE 82 86354 - 87505 1252 383 aa, chain - ## HITS:1 COG:ECs4614 KEGG:ns NR:ns ## COG: ECs4614 COG0477 # Protein_GI_number: 15833868 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 9 383 22 396 396 619 100.0 1e-177 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR HANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFIL PIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF GAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL MGLLIVLCWLPLATRMSHQGQPV >gi|223713513|gb|ACDM01000085.1| GENE 83 87818 - 87907 118 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLVDIAILILKLIVAALQLLDAVLKYLK >gi|223713513|gb|ACDM01000085.1| GENE 84 88676 - 90364 1773 562 aa, chain + ## HITS:1 COG:ECs4612 KEGG:ns NR:ns ## COG: ECs4612 COG0028 # Protein_GI_number: 15833866 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli O157:H7 # 1 562 1 562 562 1099 98.0 0 MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHE QGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTD AFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFE IETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPT TMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPN AKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLIPLVEAQPRAEWHQLVADLQREFPCP IPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMG FGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQ QSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRI DAEEKVYPMVPPGAANTEMVGE >gi|223713513|gb|ACDM01000085.1| GENE 85 90368 - 90658 354 96 aa, chain + ## HITS:1 COG:ECs4611 KEGG:ns NR:ns ## COG: ECs4611 COG0440 # Protein_GI_number: 15833865 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1 96 1 96 96 184 100.0 3e-47 MQNTTHDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQ RLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ >gi|223713513|gb|ACDM01000085.1| GENE 86 90734 - 91324 785 196 aa, chain + ## HITS:1 COG:ECs4606 KEGG:ns NR:ns ## COG: ECs4606 COG2197 # Protein_GI_number: 15833860 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 196 1 196 196 375 100.0 1e-104 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL GVSNDVELARRMFDGW >gi|223713513|gb|ACDM01000085.1| GENE 87 91324 - 92826 1216 500 aa, chain + ## HITS:1 COG:uhpB KEGG:ns NR:ns ## COG: uhpB COG3851 # Protein_GI_number: 16131538 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, glucose-6-phosphate specific # Organism: Escherichia coli K12 # 1 500 2 501 501 847 100.0 0 MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFPFGLRLGLMLQCPRGYW PVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISRYRHQRDWRTLLLQGAALT AAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWHYLANNTWLPLGPSLVSQPIN WRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALPIIALAWHYGWQGALIATLMNAI ALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRLRELNQSLQKELARNQHLAERLLET EESVRRDVARELHDDIGQTITAIRTQAGIVQRLAADNASVKQSGQLIEQLSLGVYDAVRR LLGRLRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEWRIDESALSENQRVTLFRVCQE GLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGSGQQGFGLTGMRERVTALGGT LHISCLHGTRVSVSLPQRYV >gi|223713513|gb|ACDM01000085.1| GENE 88 92836 - 94155 1275 439 aa, chain + ## HITS:1 COG:uhpC KEGG:ns NR:ns ## COG: uhpC COG2271 # Protein_GI_number: 16131537 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli K12 # 1 439 2 440 440 810 100.0 0 MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYFTRKSFNAAVPEILANG VLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSTSLWA FAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWNTAHNVGGALIPIVMAAAALH YGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVGEWRHDALEIAQQQEGAGLTRKE ILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLYMSETLGVDLVTANTAVTMFELGGF IGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQATCFFTIGFFVFG PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASLAGWPLAKVLDTWHWSGFFVVISIAA GISALLLLPFLNAQTPREA >gi|223713513|gb|ACDM01000085.1| GENE 89 94293 - 95684 1792 463 aa, chain + ## HITS:1 COG:ECs4603 KEGG:ns NR:ns ## COG: ECs4603 COG2271 # Protein_GI_number: 15833857 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 845 100.0 0 MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTY GLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSASMGSGS VSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWNISHNLGGAGAAGVAL FGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEEDKET ESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVAIQG FTLFEAGALVGTLLWGWLSDLANGRRGLVACIALALIIATLGVYQHASNEYIYLASLFAL GFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPVFGLT GWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQLTVA >gi|223713513|gb|ACDM01000085.1| GENE 90 95730 - 97496 1636 588 aa, chain - ## HITS:1 COG:yicP KEGG:ns NR:ns ## COG: yicP COG1001 # Protein_GI_number: 16131535 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Escherichia coli K12 # 1 588 1 588 588 1200 100.0 0 MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIA GVGAEYTDAPALQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPH EIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV TGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDAL IRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLSDARKVTVQQVLVK GEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFALQFTPGKRYRVIDVIHNELIT HSHSSVYSENGFDRDDVSFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV IGRSAEEMALAVNQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAA ARECGPLPDEPFIQMAFLSLPVIPALKLTSQGLFDGEKFAFTTLEVTE >gi|223713513|gb|ACDM01000085.1| GENE 91 97659 - 99005 1266 448 aa, chain + ## HITS:1 COG:yicO KEGG:ns NR:ns ## COG: yicO COG2252 # Protein_GI_number: 16131534 # Func_class: R General function prediction only # Function: Permeases # Organism: Escherichia coli K12 # 1 448 23 470 470 766 100.0 0 MDKKMNNDNTDYVSNESGTLSRLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGA AQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMG AIFWGAVGLFLLTLFRIRYWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLV MIGDLSSHGVLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPD ISGVIGEVDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKAL YVDSVSSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAIVPP YATAGALIFVGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMK VCTGRWRDLNLCVVVVAALFALKIILVD >gi|223713513|gb|ACDM01000085.1| GENE 92 99058 - 99510 394 150 aa, chain + ## HITS:1 COG:no KEGG:APECO1_2789 NR:ns ## KEGG: APECO1_2789 # Name: yicN # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 150 10 159 159 290 100.0 9e-78 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR ETEPEMQDINAFQMRYNAFFQPAEGVHWLH >gi|223713513|gb|ACDM01000085.1| GENE 93 99721 - 100911 1196 396 aa, chain + ## HITS:1 COG:yicM KEGG:ns NR:ns ## COG: yicM COG2814 # Protein_GI_number: 16131532 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 396 56 451 451 667 100.0 0 MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQS VTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA AVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIR PVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTL WGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIG GYALDNIGLTSPLMLSGTLMLLTALLVTAKVKMKKS >gi|223713513|gb|ACDM01000085.1| GENE 94 100952 - 101245 261 97 aa, chain - ## HITS:1 COG:no KEGG:SSON_3614 NR:ns ## KEGG: SSON_3614 # Name: not_defined # Def: putative transport protein # Organism: S.sonnei # Pathway: not_defined # 1 97 1 97 97 187 100.0 9e-47 MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKICTPQASLSDEAWEKLM LSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM >gi|223713513|gb|ACDM01000085.1| GENE 95 101467 - 102285 784 272 aa, chain + ## HITS:1 COG:nlpA KEGG:ns NR:ns ## COG: nlpA COG1464 # Protein_GI_number: 16131531 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli K12 # 1 272 1 272 272 503 100.0 1e-142 MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGL DVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSK KIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQI MELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKN AENVKEFLQSYQSPEVAKAAETIFNGGAVPGW >gi|223713513|gb|ACDM01000085.1| GENE 96 102289 - 103212 697 307 aa, chain - ## HITS:1 COG:yicL KEGG:ns NR:ns ## COG: yicL COG0697 # Protein_GI_number: 16131530 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 307 1 307 307 499 100.0 1e-141 MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGD KIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLV RKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPSTLI ARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYLKGA QLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVILISMDSRRRARKI NRPARHK >gi|223713513|gb|ACDM01000085.1| GENE 97 103323 - 104507 670 394 aa, chain - ## HITS:1 COG:setC KEGG:ns NR:ns ## COG: setC COG0477 # Protein_GI_number: 16131529 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 394 1 394 394 711 99.0 0 MQKTATTPSKILDLTAAAFLLVAFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSA IMGILVSQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFAST ANPQMFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAI AFVVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINM PLFIIDELHLTDKLAGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASV LMATTPAVELELQILNAIFLGILCGIGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSV DGIMVEIWSYHALFWLAIGMLGIAMICLLFIKDI >gi|223713513|gb|ACDM01000085.1| GENE 98 104889 - 105035 62 48 aa, chain - ## HITS:1 COG:no KEGG:ECB_03541 NR:ns ## KEGG: ECB_03541 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 48 2 49 49 78 100.0 8e-14 MDDERLKNPPVGSSVLERIRDIHASMRRVYLQVICPPADSQPTVSPLR >gi|223713513|gb|ACDM01000085.1| GENE 99 105531 - 106913 1222 460 aa, chain + ## HITS:1 COG:yicJ KEGG:ns NR:ns ## COG: yicJ COG2211 # Protein_GI_number: 16131528 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1 460 20 479 479 877 100.0 0 MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAI SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL GFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFN ILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN ALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG ISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIIIALFTIVPAICYLLS AIIAKRYYSLTTHNLKTVMEQLAQGKRRCQQQFTSQEVQN >gi|223713513|gb|ACDM01000085.1| GENE 100 106923 - 109241 2197 772 aa, chain + ## HITS:1 COG:yicI KEGG:ns NR:ns ## COG: yicI COG1501 # Protein_GI_number: 16131527 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1 772 1 772 772 1625 98.0 0 MKISDGNWLIQPGLNLIHPLQVFEVEQQGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSP QEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSL DFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVE TWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYF VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL HVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKEL QEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACTWYADKLKGLVAMGVDCFKTDFGER IPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWG GDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLH GSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANTRGTPMMRAMMMEFPDDPA CDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHSFLSLP VYVRDNTLLALGNNDQRPDYAWHEGTAFHLFNQQDGHEAVCEVPAADGSVIFTLKATRTG NTITVIGAGEARNWTLCLRNVVKVNGLQGGSQAESEQGLVVKPQGNALTITL >gi|223713513|gb|ACDM01000085.1| GENE 101 109294 - 111003 1387 569 aa, chain - ## HITS:1 COG:no KEGG:LF82_3356 NR:ns ## KEGG: LF82_3356 # Name: yicH # Def: uncharacterized protein yich # Organism: E.coli_LF82 # Pathway: not_defined # 1 569 1 569 569 1090 99.0 0 MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSDYHLAFGAMDHRFSAPS HIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTILLENGTLNLTDQTAPLPFK ADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPEAGKVLGTKAQIQFSAGSLSLNDVPA TNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADGSWQVENLRMADIRLQSEKSLTD FFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLSLRNMTFSKDDWQTQEGKLSMNASE FIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGGMVRTSGNWLRDGKTLILDDAAIAGLE YTLPKNWQQLWMETTPGWLNSLQLKRFSASRNLIIDIDPDFPWQLTTLDGYGANLTLVTD HKWGVWSGSANLNAAAATFNRVDVRRPSLALTANSSTVNISELSAFTEKGILEATASVSQ TPQRQTHISLNGRGVPVNILQQWGWPELPLTGDGNIQLTASGDIQANAPLKPTVSGQLHA VNAAKQQVTQTMNAGVVSSGEVTSTEPVQ >gi|223713513|gb|ACDM01000085.1| GENE 102 111124 - 112515 1749 463 aa, chain - ## HITS:1 COG:ECs4530 KEGG:ns NR:ns ## COG: ECs4530 COG2233 # Protein_GI_number: 15833784 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 785 100.0 0 MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQA LGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKT GGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTS IGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNPYLRVASLVIAMAAGYALAWFMG MLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLMLVFMITSLETIGDITATSDVSEQPV SGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLI VLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGL GVSQQPLILQFAPEWLKNLLSSGIAAGGITAIVLNLIFPPEKQ >gi|223713513|gb|ACDM01000085.1| GENE 103 112795 - 114000 1398 401 aa, chain + ## HITS:1 COG:gltS KEGG:ns NR:ns ## COG: gltS COG0786 # Protein_GI_number: 16131524 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Escherichia coli K12 # 1 401 1 401 401 619 100.0 1e-177 MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLLVALALLVLKKSMGWEV NFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVVGLLVMQNAIGIGMASLLG LDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEVAMACATFGLVLGGLIGGPVA RYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAG TAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVSVLGNVSLSLFLAMALMGLKLWELA SLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAI TERFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAG >gi|223713513|gb|ACDM01000085.1| GENE 104 114166 - 116247 2052 693 aa, chain - ## HITS:1 COG:ZrecG KEGG:ns NR:ns ## COG: ZrecG COG1200 # Protein_GI_number: 15804193 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Escherichia coli O157:H7 EDL933 # 1 693 12 704 704 1309 99.0 0 MKGRLLDTVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGV YATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAAMKNSLATGRRVLAYGEAK RGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIE ELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALR AGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGDVGS GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKGKAR LSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFH PHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACI TEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFK QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPE VQRLARHIHERYPQQAKALIERWMPETERYSNA >gi|223713513|gb|ACDM01000085.1| GENE 105 116253 - 116942 646 229 aa, chain - ## HITS:1 COG:ECs4526 KEGG:ns NR:ns ## COG: ECs4526 COG0566 # Protein_GI_number: 15833780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 447 99.0 1e-125 MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTM ASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQ EKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPE AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWSTMQAAG >gi|223713513|gb|ACDM01000085.1| GENE 106 116949 - 119057 2091 702 aa, chain - ## HITS:1 COG:ECs4525 KEGG:ns NR:ns ## COG: ECs4525 COG0317 # Protein_GI_number: 15833779 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Escherichia coli O157:H7 # 1 702 1 702 702 1414 100.0 0 MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMK LDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFR KMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKT ELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHL YSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQ SLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHA CVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRD DSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKN LQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTE EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN >gi|223713513|gb|ACDM01000085.1| GENE 107 119076 - 119351 509 91 aa, chain - ## HITS:1 COG:ECs4524 KEGG:ns NR:ns ## COG: ECs4524 COG1758 # Protein_GI_number: 15833778 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Escherichia coli O157:H7 # 1 91 1 91 91 112 100.0 2e-25 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN NQILDVRERQEQQEQEAAELQAVTAIAEGRR >gi|223713513|gb|ACDM01000085.1| GENE 108 119406 - 120029 553 207 aa, chain - ## HITS:1 COG:gmk KEGG:ns NR:ns ## COG: gmk COG0194 # Protein_GI_number: 16131519 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Escherichia coli K12 # 1 207 1 207 207 398 100.0 1e-111 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD EFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARS IFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLK TIIRAERLRMSRQKQRHDALISKLLAD >gi|223713513|gb|ACDM01000085.1| GENE 109 120287 - 121969 990 560 aa, chain + ## HITS:1 COG:yicF KEGG:ns NR:ns ## COG: yicF COG0272 # Protein_GI_number: 16131518 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1 560 3 562 562 1056 99.0 0 MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV YDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLW VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELA TAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWL VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN AQIKKLGSWLAAQQITGFEP >gi|223713513|gb|ACDM01000085.1| GENE 110 121966 - 122583 885 205 aa, chain - ## HITS:1 COG:yicG KEGG:ns NR:ns ## COG: yicG COG2860 # Protein_GI_number: 16131517 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 205 19 223 223 326 100.0 2e-89 MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVK HPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVV AAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVF GFFARLLALRLKLGLPVFYYSHEGH >gi|223713513|gb|ACDM01000085.1| GENE 111 122875 - 123699 698 274 aa, chain - ## HITS:1 COG:no KEGG:JW3620 NR:ns ## KEGG: JW3620 # Name: dinD # Def: DNA-damage-inducible protein # Organism: E.coli_J # Pathway: not_defined # 1 274 1 274 274 503 99.0 1e-141 MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDH FEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFAIQTRRQELAD DEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQK AIHQRKGLKKNQKILDHMGSTELAANLFRATQTEEKLKRDGVNSKQQANTTHFDVGSKVM QTIQELGGTMPEELPTPQVSIKQLENSVKITEKK >gi|223713513|gb|ACDM01000085.1| GENE 112 123921 - 124784 1096 287 aa, chain - ## HITS:1 COG:yicC KEGG:ns NR:ns ## COG: yicC COG1561 # Protein_GI_number: 16131515 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Escherichia coli K12 # 1 287 1 287 287 456 100.0 1e-128 MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRSRLTRG KVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMQSDEGEINPVDILRWPGVMAAQE QDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVTAEVVKVRSHMPEILQW QRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYNILKKKEAVGR RLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE >gi|223713513|gb|ACDM01000085.1| GENE 113 124911 - 125627 838 238 aa, chain + ## HITS:1 COG:ECs4518 KEGG:ns NR:ns ## COG: ECs4518 COG0689 # Protein_GI_number: 15833772 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Escherichia coli O157:H7 # 1 238 1 238 238 416 100.0 1e-116 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ ADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN >gi|223713513|gb|ACDM01000085.1| GENE 114 125692 - 126333 780 213 aa, chain + ## HITS:1 COG:pyrE KEGG:ns NR:ns ## COG: pyrE COG0461 # Protein_GI_number: 16131513 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Escherichia coli K12 # 1 213 1 213 213 421 100.0 1e-118 MKPYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDS GIEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQGRV MLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERDYNCKVIS IITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV >gi|223713513|gb|ACDM01000085.1| GENE 115 126370 - 126966 684 198 aa, chain - ## HITS:1 COG:ECs4516 KEGG:ns NR:ns ## COG: ECs4516 COG1309 # Protein_GI_number: 15833770 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 198 15 212 212 340 100.0 7e-94 MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD SLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHALMFEQDR LQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKY RPTDDFDARWPLIAAQLQ >gi|223713513|gb|ACDM01000085.1| GENE 116 127073 - 127531 630 152 aa, chain - ## HITS:1 COG:ECs4515 KEGG:ns NR:ns ## COG: ECs4515 COG0756 # Protein_GI_number: 15833769 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Escherichia coli O157:H7 # 2 152 1 151 151 298 100.0 2e-81 MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELAPGDTTLVPTGLAIHIA DPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQM IFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ >gi|223713513|gb|ACDM01000085.1| GENE 117 127509 - 128729 1129 406 aa, chain - ## HITS:1 COG:ECs4514 KEGG:ns NR:ns ## COG: ECs4514 COG0452 # Protein_GI_number: 15833768 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Escherichia coli O157:H7 # 1 406 25 430 430 764 99.0 0 MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSLQAVSGYPV SDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATPAPVAV LPAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRILDPLTIVDMAVAHF SPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGFAIAAAAARRGANVTLVSGPVSL PTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDEL TIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQ GFNSDNNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNRR >gi|223713513|gb|ACDM01000085.1| GENE 118 128901 - 129569 461 222 aa, chain + ## HITS:1 COG:ECs4513 KEGG:ns NR:ns ## COG: ECs4513 COG2003 # Protein_GI_number: 15833767 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli O157:H7 # 1 222 3 224 224 431 99.0 1e-121 MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLT SEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEER EIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEP SKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI >gi|223713513|gb|ACDM01000085.1| GENE 119 129786 - 130022 403 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804178|ref|NP_290217.1| 50S ribosomal protein L28 [Escherichia coli O157:H7 EDL933] # 1 78 1 78 78 159 100 6e-38 MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVID KKGIDTVLAELRARGEKY >gi|223713513|gb|ACDM01000085.1| GENE 120 130043 - 130210 280 55 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804177|ref|NP_290216.1| 50S ribosomal protein L33 [Escherichia coli O157:H7 EDL933] # 1 55 1 55 55 112 100 1e-23 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK >gi|223713513|gb|ACDM01000085.1| GENE 121 130308 - 131117 836 269 aa, chain + ## HITS:1 COG:ECs4510 KEGG:ns NR:ns ## COG: ECs4510 COG0266 # Protein_GI_number: 15833764 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Escherichia coli O157:H7 # 1 269 1 269 269 555 99.0 1e-158 MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLL LELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMNNGKVLRYTDPRRFGAWLWTKEL EGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG IHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRK GEPCRVCGTPIVATKHAQRATFYCRQCQK >gi|223713513|gb|ACDM01000085.1| GENE 122 131156 - 131635 388 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 159 3 160 164 154 46 3e-36 MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVELAQQATA HLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMP SKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA >gi|223713513|gb|ACDM01000085.1| GENE 123 131643 - 132920 1095 425 aa, chain - ## HITS:1 COG:ECs4508 KEGG:ns NR:ns ## COG: ECs4508 COG1519 # Protein_GI_number: 15833762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Escherichia coli O157:H7 # 1 425 1 425 425 830 99.0 0 MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRHPLKPGGIMLHSVSVGE TLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNK VDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVRRLLRRITLI AAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQWAPHRPVWIATST HEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTS TQVVVGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA RLEQASGLITVTDATTLVKEVSSLLTDADYRSFYGRHAVEVLYQNQGALQRLLQLLEPYL PPKTH >gi|223713513|gb|ACDM01000085.1| GENE 124 133363 - 134397 409 344 aa, chain + ## HITS:1 COG:rfaQ KEGG:ns NR:ns ## COG: rfaQ COG0859 # Protein_GI_number: 16131503 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1 344 1 344 344 715 97.0 0 MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGTGTFDK IKNALSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHL APIHGTHIVERNLSVLEPLGITDFYTETTMSYAEDCWKKMRQELDALGVKDHYVVIQPTA RQIFKCWDNDKFSMVIDALQHRGYQVVLTCGPSADDLACVDEIARGCQTKPITGLAGKTR FPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQ KMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL >gi|223713513|gb|ACDM01000085.1| GENE 125 134394 - 135518 660 374 aa, chain + ## HITS:1 COG:rfaG KEGG:ns NR:ns ## COG: rfaG COG0438 # Protein_GI_number: 16131502 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1 374 1 374 374 747 95.0 0 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPEAFELIRVPVKSHT NHGRNAEYYAWVQNHLKAHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFFYRLTSR YRHYAAFERATFEHGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYNAQIP NSREIYRQKNGITEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPR KFEVLAEKLGVRSKVHFFSGRNDVSELMAAADLLMHPAYQEAAGIVLLEAIAAGLPVLTT AVCGYAHYITDANCGTVIAEPFSQEQLNDVLRKALTQSPLRMAWAENARYYADTQDLYSL PEKAADIITGGLDG >gi|223713513|gb|ACDM01000085.1| GENE 126 135511 - 136308 459 265 aa, chain + ## HITS:1 COG:no KEGG:EFER_3921 NR:ns ## KEGG: EFER_3921 # Name: waaP # Def: kinase that phosphorylates core heptose of lipopolysaccharide # Organism: E.fergusonii # Pathway: Lipopolysaccharide biosynthesis [PATH:efe00540]; Metabolic pathways [PATH:efe01100] # 1 265 1 265 265 503 93.0 1e-141 MVELEEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELAGKSYFLKWHKGTTLKEI IKNLLSLRMPVLGADREWHAIHRLHDVGVDTMHGIGFGEKGLNPLTRTSFIITEDLTPTI SLEDYCADWAVNPPDVHIKRMLIARVATMVRKMHAAGINHRDCYICHFLLHLPFTGREDE LKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRDIYR LEIDLLKKARIKAGKIEARTIRKNL >gi|223713513|gb|ACDM01000085.1| GENE 127 136341 - 137321 159 326 aa, chain + ## HITS:1 COG:ECs4504 KEGG:ns NR:ns ## COG: ECs4504 COG1442 # Protein_GI_number: 15833758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli O157:H7 # 13 322 15 335 335 141 33.0 2e-33 MLKYRNFVAKKKNLYQNEVSYVKNLHIALCFDREFIMPAGVALYSIISNNRHINLHFHLL ISGIEEKECSAFYELEGPNTSISVYYITDKFDINPDTLVLGIPLSTCLRFLIPEVIDDKI NKILYLDCDVICNGPLDELVDYNLNADIACVIPDSPEMQERVKKLDYGIEFINYFNAGVM FINTSEWKKNNITQKALEMINSGKVYRYADQDVLNILLNGRVHYLDKKYNNKTTLSVRCD EEQKNLPNTIIMHYVTQNKPWYKIFRAQNFDHYFSNSPWKNHKRNLAPSSSEIRLKSKVF WLEGKYCKAISYYYKYLLVKLFGLKI >gi|223713513|gb|ACDM01000085.1| GENE 128 137335 - 138414 446 359 aa, chain + ## HITS:1 COG:rfaB KEGG:ns NR:ns ## COG: rfaB COG0438 # Protein_GI_number: 16131499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1 359 11 369 369 714 92.0 0 MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEIFFFCRNDKMDKGWLEGIKYSCSFS NIRLGFLRRAKHIHALSKWLHDYQPDVVICIDVISCLYAAKARKKSGIDVPVFSWPHFSL DHKKHAEYITCADYHLAISSGIKQQMISRGVPESTINVIFNPVEAKNSVIPAPGEGETAT FIYVGRMKFEGQKRVKDLLDGLSQVQGDWKLHVLGDGSDFEKCQAYGRGLNIDDRIVWYG WQQHPWKLVQQDIKKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPVDIIQPDVN GHLYQPGDMTGFVALLNKYIAGEIHIAHEKIPASIDKFYQPKYYDRLQKIIISVISRRK >gi|223713513|gb|ACDM01000085.1| GENE 129 138414 - 139433 357 339 aa, chain + ## HITS:1 COG:rfaI KEGG:ns NR:ns ## COG: rfaI COG1442 # Protein_GI_number: 16131498 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli K12 # 1 339 1 339 339 624 88.0 1e-178 MQQVFFQETEFLNSVIDYNHKIEAENLCLDIAYGTDKNFLFGCGISIASILKYNEGNQLC FHIFTDYFGDDDRKYFDALARQYKTRIKIYLINGDRLRSLPCTKNWTHAIYFRFVIADYF FNKAPKVLYLDADIICQGTIEPLINYTFSEHTVAMVVTEGQKDWWAKRAHSLGVAGIANG YFNSGFLLINTNQWTNERVSARAIAMLSDPEIVKKITHPDQDVLNMLLADKLVYADIKYN TQFSLNYQLKESFKNPVTNDTVFIHYIGPTKPWHDWAWDYPISQAFMAAKNASPWKDTAL LKPVNSNQLRYSAKHMLKKKQYIKGFGNYLLYFIKKLKH >gi|223713513|gb|ACDM01000085.1| GENE 130 139597 - 140613 270 338 aa, chain + ## HITS:1 COG:rfaJ KEGG:ns NR:ns ## COG: rfaJ COG1442 # Protein_GI_number: 16131497 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli K12 # 1 338 1 338 338 602 89.0 1e-172 MNSFPAIEIDKVKAWDFRLIDENTAESLNVAYGVDSNYLDGVGVSITSIVINNRHVNLDF YIIADVYNDDFFQKVEKLAEQYQLRITLYRINTDNLQCLPCTQVWSRAMYFRLFAFQLLG VTLNRLLYLDADVVCKGNISQLLHLEFNGAVAAVVRDVDPMQEKAVVRLSDPELRGQYFN SGVVYLDLKKWTEAKLTEKALSILMSKDSIYKYPDQDVMNVLLKGMTIFLPREFNTIYTI KSELKDKTHQKYKELIKEDTLLIHYTGATKPWHKWAIYPSVKYYKIALERSPWKDDSPRD AKSIIEFKKRYKHLLVQHHYISGLIAGVCYLCRKYYRK >gi|223713513|gb|ACDM01000085.1| GENE 131 140631 - 141329 378 232 aa, chain + ## HITS:1 COG:no KEGG:EFER_3914 NR:ns ## KEGG: EFER_3914 # Name: waaY # Def: lipopolysaccharide core biosynthesis protein # Organism: E.fergusonii # Pathway: Lipopolysaccharide biosynthesis [PATH:efe00540]; Metabolic pathways [PATH:efe01100] # 1 232 1 232 232 416 98.0 1e-115 MIQKNKIKDLVVFTDENNSKYLNVLNDFLSYDINIIKVFRSIDDTKVMLIDTDYGKLILK VFSPKVKRNERFFKSLLKGDYYERLFEHTQKVRNEGLHSLNDFYLLAERKTLRFVHTYIM LIEYIDGVELCDIPDIDETLKNKIQQSIRSLHEHGMVSGDPHRGNFIIENGEVRIIDLSG KRASAQRKAKDRIDLERHYGIKNEVKDLGYYLLVYRKKIRNLMRRLKGKPAR >gi|223713513|gb|ACDM01000085.1| GENE 132 141401 - 142210 272 269 aa, chain + ## HITS:1 COG:no KEGG:EFER_3913 NR:ns ## KEGG: EFER_3913 # Name: waaZ # Def: lipopolysaccharide core biosynthesis protein # Organism: E.fergusonii # Pathway: not_defined # 1 269 1 269 269 515 99.0 1e-145 MKNIRYIDKKDVENLIESKTSDDVIIFLSGPTSQKTPLSVLQTRDVIAVNGSAQYLLSHN IIPYIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEHASEEDKRYILQNCLVLRSFY RREKGGLIKKIKFNILSRIHKELLISVPFSKKGRLVGFCKDINLGYCSCHTVAFAAIQIA YSLKYARIICSGLDLTGSCSRFYDEDKNPMPSELIRDLFKILPFFRFMRENIEDINIYNL SDDTAIQYDIIPYMKISEIEEPCVYEKIS >gi|223713513|gb|ACDM01000085.1| GENE 133 142263 - 143405 469 380 aa, chain + ## HITS:1 COG:STM3714 KEGG:ns NR:ns ## COG: STM3714 COG0438 # Protein_GI_number: 16766999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Salmonella typhimurium LT2 # 1 379 1 379 381 597 74.0 1e-170 MIKKIIFTVTPIFSIPPKGAAAVETWIYQVAKRLSIPVTIACIRNEGYPTYTKVNDHCDI HYIGFSRVYKRLFQKWTRLDPVPYSQRILNTQPKNTDPKDSVIVIHNSMKLYKQIRSRSP HAQLVMHLHNAFEPGELDKNAKIIVPSQFLFDFYSEKMPDANIAIVPNGFCSESYEQNNT EDLRQKLNIDANDTVLLFAGRISPDKGCLMLMEAFNQLNKIQDNLKLVIVGDPFASKKGE KAEYQKKVLDAAKAIGAQCIMAGGQPPEQMHNYYRLADLVVVPSQVEEAFCMVAVEAMAA GKPVLASQKGGISEFVLEGITGYHLAEPMTSESILADIKRVLADADRAQIAKNARNFVFS KYSWEHVTQRFEAQIQDWFG >gi|223713513|gb|ACDM01000085.1| GENE 134 143460 - 144677 430 405 aa, chain - ## HITS:1 COG:STM3713 KEGG:ns NR:ns ## COG: STM3713 COG3307 # Protein_GI_number: 16766998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 405 1 404 404 523 65.0 1e-148 MLTASLALRNKEKWKPYWNKALVFLFIATFFLDGITRYKHIISILMIITVIYQVSRAPGT FKVLYKNNLFYSVLALSLILLYATFISPDLKISFKEFSNTVLKGFLAYSLLIPALLKDED NESIGKIVLYSLVTGLGLRCLVELILYIQDYNKGIMPFSTYEHRSISDSMVFLFPALLNL WLIKKTSYKIAFVIFSAVFLFLLLGTLSRGAWLAVFIVTLLWLILNRQWKLLMLTSIVIS VAAVGVFTYKGDHAGKDRLIYKLQQTDSSYRYTNGTQGTAWTLIMENPLKGYGYGDDIYH AIYNKRVVDFPSWKFRQSIGPHNVVLSIWFAAGLAGLLALLYLYGSIIKETANATFKTVV VTPYNGQLLLFLTLVSFYIIRGNFEEVDLKPIGLIVGLLLAMRNK >gi|223713513|gb|ACDM01000085.1| GENE 135 144716 - 145672 897 318 aa, chain - ## HITS:1 COG:rfaC KEGG:ns NR:ns ## COG: rfaC COG0859 # Protein_GI_number: 16131492 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1 318 1 318 319 607 94.0 1e-174 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIR RWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR EPLASLFYNRKHHIAKQQHAVERIRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEY AVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEKRAKRLAEGFAYVEVLP KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQVVCRAP DKDLAHLTAETVFNKINS >gi|223713513|gb|ACDM01000085.1| GENE 136 145676 - 146722 1004 348 aa, chain - ## HITS:1 COG:rfaF KEGG:ns NR:ns ## COG: rfaF COG0859 # Protein_GI_number: 16131491 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1 348 1 348 348 710 99.0 0 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG HGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDV RVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSER PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQ AWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSH KARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNSLLLQEEA >gi|223713513|gb|ACDM01000085.1| GENE 137 146802 - 147782 1008 326 aa, chain - ## HITS:1 COG:ECs4497 KEGG:ns NR:ns ## COG: ECs4497 COG0451 # Protein_GI_number: 15833751 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 309 1 309 310 622 100.0 1e-178 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS MASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRA ESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT EYMAWLNRDINVNSQNHSSGIKAAAK >gi|223713513|gb|ACDM01000085.1| GENE 138 147996 - 149192 1590 398 aa, chain + ## HITS:1 COG:ECs4495 KEGG:ns NR:ns ## COG: ECs4495 COG0156 # Protein_GI_number: 15833749 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Escherichia coli O157:H7 # 1 398 1 398 398 763 98.0 0 MRGDFYQQLANDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPE LIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFE TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIAT DGVFSMDGVIANLKGVCNLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRD RLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVV PKGQARIRTQMSAAHTSEQITRAVEAFTRIGKQLGVIA >gi|223713513|gb|ACDM01000085.1| GENE 139 149202 - 150227 1066 341 aa, chain + ## HITS:1 COG:tdh KEGG:ns NR:ns ## COG: tdh COG1063 # Protein_GI_number: 16131487 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 341 1 341 341 707 99.0 0 MKALSKLKAEEGIWMTDVPEPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMV VGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRPGC FAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVSGAGPIGIMAA AVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAELGMTEGFDVGLEMS GAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAA LIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSGKVILSWD >gi|223713513|gb|ACDM01000085.1| GENE 140 150469 - 151500 535 343 aa, chain + ## HITS:1 COG:yibD KEGG:ns NR:ns ## COG: yibD COG0463 # Protein_GI_number: 16131486 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 343 2 344 344 682 99.0 0 MNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYP HVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCN ADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNI KFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIK ITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYK RLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR >gi|223713513|gb|ACDM01000085.1| GENE 141 151487 - 152446 764 319 aa, chain - ## HITS:1 COG:ECs4492 KEGG:ns NR:ns ## COG: ECs4492 COG2861 # Protein_GI_number: 15833746 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 43 319 1 277 277 530 99.0 1e-150 MFPFRRNVLAFAALLVLSSPVLAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE PQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPVYANRFFEVLSESISQSTLIVYFQH QWQGWGKQPEAAKFNASAN >gi|223713513|gb|ACDM01000085.1| GENE 142 152450 - 153709 1334 419 aa, chain - ## HITS:1 COG:ECs4491 KEGG:ns NR:ns ## COG: ECs4491 COG4942 # Protein_GI_number: 15833745 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Membrane-bound metallopeptidase # Organism: Escherichia coli O157:H7 # 1 419 9 427 427 602 100.0 1e-172 MTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQADIAAKERAVRQKQQQ RASLLAQLKKQEEAISEATRKLRETQNTLNQLNKQIDEMNASIAKLEQQKAAQERSLAAQ LDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQETIAQLKQTREEVAMQRAEL EEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLESSIQQGQQQLSELRANESRLRNSI ARAEAAAKARAEREAREAQAVRDRQKEATRKGTTYKPTESEKSLMSRTGGLGAPRGQAFW PVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGK GDMSLYGYNQSALVSVGSQVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR >gi|223713513|gb|ACDM01000085.1| GENE 143 153743 - 155287 1755 514 aa, chain - ## HITS:1 COG:ECs4490 KEGG:ns NR:ns ## COG: ECs4490 COG0696 # Protein_GI_number: 15833744 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Escherichia coli O157:H7 # 1 514 1 514 514 1008 100.0 0 MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQ MGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLS AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGR VASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAA DIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILI NSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA LDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA VAGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE >gi|223713513|gb|ACDM01000085.1| GENE 144 155532 - 155963 429 143 aa, chain + ## HITS:1 COG:ECs4489 KEGG:ns NR:ns ## COG: ECs4489 COG0607 # Protein_GI_number: 15833743 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli O157:H7 # 1 143 1 143 143 276 100.0 6e-75 MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLR QRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFA QVFVLKEGVAGWAGENLPLVRGK >gi|223713513|gb|ACDM01000085.1| GENE 145 156105 - 156356 317 83 aa, chain + ## HITS:1 COG:ECs4488 KEGG:ns NR:ns ## COG: ECs4488 COG0695 # Protein_GI_number: 15833742 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Escherichia coli O157:H7 # 1 83 1 83 83 173 100.0 9e-44 MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA QHIGGCDDLYALDARGGLDPLLK >gi|223713513|gb|ACDM01000085.1| GENE 146 156419 - 156886 529 155 aa, chain + ## HITS:1 COG:ECs4487 KEGG:ns NR:ns ## COG: ECs4487 COG1952 # Protein_GI_number: 15833741 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecB # Organism: Escherichia coli O157:H7 # 1 155 1 155 155 309 100.0 1e-84 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVL RVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSR GTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA >gi|223713513|gb|ACDM01000085.1| GENE 147 156886 - 157905 1075 339 aa, chain + ## HITS:1 COG:ECs4486 KEGG:ns NR:ns ## COG: ECs4486 COG0240 # Protein_GI_number: 15833740 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 339 1 339 339 664 100.0 0 MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATLERDRCNAAFLPDVPFP DTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLL QDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRVY SNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPATF MGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAHRF GVEMPITEEIYQVLYCGKNAREAALTLLGRARKDERSSH >gi|223713513|gb|ACDM01000085.1| GENE 148 157985 - 158806 886 273 aa, chain + ## HITS:1 COG:ECs4485 KEGG:ns NR:ns ## COG: ECs4485 COG1045 # Protein_GI_number: 15833739 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1 273 1 273 273 551 100.0 1e-157 MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPA IAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWL WNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSV TLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP ARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI >gi|223713513|gb|ACDM01000085.1| GENE 149 158859 - 159332 426 157 aa, chain - ## HITS:1 COG:yibK KEGG:ns NR:ns ## COG: yibK COG0219 # Protein_GI_number: 16131477 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Escherichia coli K12 # 1 157 1 157 157 322 99.0 2e-88 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRH HDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKI RIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD Prediction of potential genes in microbial genomes Time: Mon May 16 19:27:18 2011 Seq name: gi|223713512|gb|ACDM01000086.1| Escherichia sp. 4_1_40B cont1.86, whole genome shotgun sequence Length of sequence - 13718 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 7, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 115 - 1305 1560 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 2 1 Op 2 4/0.000 - CDS 1302 - 2078 692 ## COG2186 Transcriptional regulators 3 1 Op 3 . - CDS 2078 - 3733 1787 ## COG1620 L-lactate permease - Prom 3854 - 3913 2.5 + Prom 3568 - 3627 2.7 4 2 Tu 1 . + CDS 3670 - 3888 62 ## - Term 3967 - 4004 7.1 5 3 Tu 1 . - CDS 4105 - 4467 438 ## ECSP_4596 hypothetical protein - Prom 4618 - 4677 4.8 + Prom 4522 - 4581 4.0 6 4 Tu 1 . + CDS 4752 - 4961 232 ## JW3576 hypothetical protein 7 5 Op 1 7/0.000 - CDS 4973 - 5560 415 ## COG3722 Transcriptional regulator 8 5 Op 2 11/0.000 - CDS 5560 - 6708 1564 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Prom 6843 - 6902 2.6 - Term 6891 - 6931 6.2 9 5 Op 3 . - CDS 6938 - 8851 2500 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component + Prom 9088 - 9147 5.2 10 6 Op 1 . + CDS 9388 - 9750 283 ## EcSMS35_3931 hypothetical protein 11 6 Op 2 . + CDS 9753 - 10889 1064 ## COG1566 Multidrug resistance efflux pump + Term 10923 - 10957 -0.8 12 7 Op 1 . - CDS 12494 - 12955 93 ## JW3570 conserved hypothetical protein 13 7 Op 2 . - CDS 12967 - 13716 225 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713512|gb|ACDM01000086.1| GENE 1 115 - 1305 1560 396 aa, chain - ## HITS:1 COG:lldD KEGG:ns NR:ns ## COG: lldD COG1304 # Protein_GI_number: 16131476 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Escherichia coli K12 # 1 396 1 396 396 783 100.0 0 MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSL ETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAI KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMR RYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGD IAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMT LTGAKSISEITQDSLVQGLGKELPAALAPMAKGNAA >gi|223713512|gb|ACDM01000086.1| GENE 2 1302 - 2078 692 258 aa, chain - ## HITS:1 COG:lldR KEGG:ns NR:ns ## COG: lldR COG2186 # Protein_GI_number: 16131475 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 258 1 258 258 489 100.0 1e-138 MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGV LLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDILEARYAIEASTAWHAAMRA TPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHNIVLLQTMRGFFDVLQSSVKH SRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHA RITRLPGEHNEHSREKNA >gi|223713512|gb|ACDM01000086.1| GENE 3 2078 - 3733 1787 551 aa, chain - ## HITS:1 COG:lldP KEGG:ns NR:ns ## COG: lldP COG1620 # Protein_GI_number: 16131474 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Escherichia coli K12 # 1 551 1 551 551 928 100.0 0 MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKM PVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLI VGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVA GQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYL SSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVL RAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAY AAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAF ISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGV SDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITT LQAYVLTWMIP >gi|223713512|gb|ACDM01000086.1| GENE 4 3670 - 3888 62 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSDWKARYSRRDRSFVARDSLQVSWSPRTSCNESVAHLLVTRCVKVALPIVLCRDNDNE WLTKCYVLATLM >gi|223713512|gb|ACDM01000086.1| GENE 5 4105 - 4467 438 120 aa, chain - ## HITS:1 COG:no KEGG:ECSP_4596 NR:ns ## KEGG: ECSP_4596 # Name: yibL # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 120 1 120 120 168 99.0 5e-41 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL SKEAQKLMKMPFQRAITKKEQADMGKLKKSVCGLVVVHPMTALGREMGLQEMTGFSKTAF >gi|223713512|gb|ACDM01000086.1| GENE 6 4752 - 4961 232 69 aa, chain + ## HITS:1 COG:no KEGG:JW3576 NR:ns ## KEGG: JW3576 # Name: yibT # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 69 1 69 69 121 100.0 6e-27 MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRL YRPKQVEGQ >gi|223713512|gb|ACDM01000086.1| GENE 7 4973 - 5560 415 195 aa, chain - ## HITS:1 COG:mtlR KEGG:ns NR:ns ## COG: mtlR COG3722 # Protein_GI_number: 16131472 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 195 1 195 195 367 100.0 1e-101 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL TELISKISLKKAFQK >gi|223713512|gb|ACDM01000086.1| GENE 8 5560 - 6708 1564 382 aa, chain - ## HITS:1 COG:mtlD KEGG:ns NR:ns ## COG: mtlD COG0246 # Protein_GI_number: 16131471 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1 382 1 382 382 729 99.0 0 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV SGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIAC ENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRIVPPSASATNDPLEVTVETFS EWIVDKTQFKGALSNIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAIL DEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRK LSAGDRLIKPLLGTLEYGLPHKNLIEGIAAAMHFRSEDDPQAQELAALIADKGPQAALAQ ISGLDANSEVVSEAVTAYKAMQ >gi|223713512|gb|ACDM01000086.1| GENE 9 6938 - 8851 2500 637 aa, chain - ## HITS:1 COG:mtlA_1 KEGG:ns NR:ns ## COG: mtlA_1 COG2213 # Protein_GI_number: 16131470 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Escherichia coli K12 # 1 493 1 493 493 926 100.0 0 MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLL PLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGWCIKHFDRWVDG KIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKMLAAGVNFMVVHDMLPLASIF VEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGSAK QSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILGGGLVSPASPGSI LAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESK GASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL PPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTANEEKVKD SLKDSFDDSSANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREK LTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEH IQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK >gi|223713512|gb|ACDM01000086.1| GENE 10 9388 - 9750 283 120 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_3931 NR:ns ## KEGG: EcSMS35_3931 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 120 35 154 154 238 100.0 6e-62 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI >gi|223713512|gb|ACDM01000086.1| GENE 11 9753 - 10889 1064 378 aa, chain + ## HITS:1 COG:ECs4473 KEGG:ns NR:ns ## COG: ECs4473 COG1566 # Protein_GI_number: 15833727 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli O157:H7 # 1 378 1 378 378 723 100.0 0 MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVM RKVLLRMTSWMHYLYLDH >gi|223713512|gb|ACDM01000086.1| GENE 12 12494 - 12955 93 153 aa, chain - ## HITS:1 COG:no KEGG:JW3570 NR:ns ## KEGG: JW3570 # Name: yibG # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 153 1 153 153 277 100.0 7e-74 MKACLLLFFYFSFICQLHGADVKIKQNESMMGSTAMTYDLSEEKLMKLKYKSQHGDSEAS FRLYQYYCFTKNNIYKQLRFLERSASQGNVTAQFNYGVFLSDTNPTLSEYYNLNRAIYWM EFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP >gi|223713512|gb|ACDM01000086.1| GENE 13 12967 - 13716 225 249 aa, chain - ## HITS:1 COG:ECs4470 KEGG:ns NR:ns ## COG: ECs4470 COG3209 # Protein_GI_number: 15833724 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 1 249 1161 1409 1409 520 99.0 1e-148 EGTTEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQ DPIGLKGGWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTP TSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFASQLAKELHTNVIG PDTLWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQG TPEKPSDIR Prediction of potential genes in microbial genomes Time: Mon May 16 19:28:01 2011 Seq name: gi|223713511|gb|ACDM01000087.1| Escherichia sp. 4_1_40B cont1.87, whole genome shotgun sequence Length of sequence - 94925 bp Number of predicted genes - 81, with homology - 80 Number of transcription units - 50, operones - 16 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 129 - 188 4.2 1 1 Op 1 4/0.300 + CDS 309 - 917 729 ## COG0625 Glutathione S-transferase 2 1 Op 2 7/0.000 + CDS 1015 - 2406 1366 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 3 1 Op 3 2/0.900 + CDS 2403 - 4247 1781 ## COG3276 Selenocysteine-specific translation elongation factor + Term 4298 - 4357 13.1 + Prom 4328 - 4387 9.5 4 2 Op 1 6/0.000 + CDS 4437 - 5588 1357 ## COG1454 Alcohol dehydrogenase, class IV + Term 5604 - 5638 5.1 + Prom 5609 - 5668 2.3 5 2 Op 2 . + CDS 5753 - 7291 1814 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 7300 - 7354 -0.3 - Term 7402 - 7453 -0.6 6 3 Tu 1 . - CDS 7510 - 7722 133 ## ECIAI1_3755 conserved hypothetical protein, putative membrane protein - Prom 7745 - 7804 5.8 + Prom 7744 - 7803 8.8 7 4 Op 1 . + CDS 7836 - 8159 358 ## B21_03393 hypothetical protein 8 4 Op 2 . + CDS 8165 - 9301 1036 ## COG1566 Multidrug resistance efflux pump + Term 9351 - 9385 -0.7 9 5 Tu 1 . - CDS 9298 - 10272 704 ## COG0583 Transcriptional regulator - Prom 10295 - 10354 10.5 + Prom 10244 - 10303 8.9 10 6 Tu 1 . + CDS 10396 - 11136 737 ## COG3713 Outer membrane protein V 11 7 Op 1 8/0.000 - CDS 11483 - 12178 576 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 12 7 Op 2 9/0.000 - CDS 12172 - 13032 946 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 13 7 Op 3 3/0.750 - CDS 13025 - 13687 799 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 14 7 Op 4 3/0.750 - CDS 13641 - 15179 1244 ## COG1070 Sugar (pentulose and hexulose) kinases 15 7 Op 5 9/0.000 - CDS 15183 - 16169 392 ## PROTEIN SUPPORTED gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22 16 7 Op 6 11/0.000 - CDS 16182 - 17462 754 ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 17 7 Op 7 2/0.900 - CDS 17462 - 17935 302 ## COG3090 TRAP-type C4-dicarboxylate transport system, small permease component - Prom 17991 - 18050 1.9 - Term 18005 - 18043 -0.7 18 8 Op 1 3/0.750 - CDS 18053 - 18520 478 ## COG2731 Beta-galactosidase, beta subunit 19 8 Op 2 . - CDS 18532 - 19530 1096 ## COG2055 Malate/L-lactate dehydrogenases - Prom 19591 - 19650 4.5 + Prom 19521 - 19580 6.0 20 9 Op 1 . + CDS 19731 - 20579 726 ## COG1414 Transcriptional regulator 21 9 Op 2 . + CDS 20681 - 21154 132 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 + Term 21157 - 21202 8.2 22 10 Tu 1 . - CDS 21305 - 22558 1269 ## COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase - Prom 22589 - 22648 2.4 23 11 Tu 1 . - CDS 22736 - 24766 1726 ## COG0366 Glycosidases - Prom 25007 - 25066 5.6 24 12 Tu 1 . + CDS 25338 - 25910 465 ## COG2992 Uncharacterized FlgJ-related protein + Term 25923 - 25968 13.0 25 13 Tu 1 4/0.300 - CDS 26106 - 27284 998 ## COG1609 Transcriptional regulators - Term 27300 - 27345 8.0 26 14 Op 1 11/0.000 - CDS 27362 - 28543 1091 ## COG4214 ABC-type xylose transport system, permease component 27 14 Op 2 11/0.000 - CDS 28521 - 30062 231 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 30096 - 30136 5.1 28 14 Op 3 . - CDS 30140 - 31132 919 ## COG4213 ABC-type xylose transport system, periplasmic component - Prom 31351 - 31410 6.9 + Prom 31342 - 31401 4.7 29 15 Op 1 11/0.000 + CDS 31498 - 32820 1375 ## COG2115 Xylose isomerase + Term 32822 - 32859 -0.3 30 15 Op 2 3/0.750 + CDS 32892 - 34346 918 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 34349 - 34397 1.1 + Prom 34379 - 34438 5.8 31 16 Op 1 1/1.000 + CDS 34515 - 34856 357 ## COG4682 Predicted membrane protein 32 16 Op 2 . + CDS 34902 - 35339 472 ## COG4682 Predicted membrane protein + Term 35349 - 35386 5.3 33 17 Tu 1 . - CDS 35381 - 36376 801 ## COG3274 Uncharacterized protein conserved in bacteria - Prom 36508 - 36567 3.8 + Prom 36441 - 36500 4.5 34 18 Op 1 . + CDS 36554 - 36850 286 ## JW3532 hypothetical protein + Prom 36854 - 36913 3.4 35 18 Op 2 19/0.000 + CDS 36945 - 37856 1151 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 36 18 Op 3 . + CDS 37866 - 39935 2917 ## COG0751 Glycyl-tRNA synthetase, beta subunit + Term 39954 - 39984 3.0 - Term 40137 - 40171 0.2 37 19 Tu 1 . - CDS 40214 - 40579 185 ## COG2801 Transposase and inactivated derivatives + Prom 40395 - 40454 4.0 38 20 Tu 1 . + CDS 40520 - 40807 58 ## gi|10955443|ref|NP_065295.1| hypothetical protein R721_05 + Term 40816 - 40853 0.1 39 21 Tu 1 . - CDS 41062 - 41583 133 ## COG2963 Transposase and inactivated derivatives + Prom 41520 - 41579 3.5 40 22 Tu 1 . + CDS 41663 - 41815 69 ## ECP_3660 small toxic polypeptide + Term 41824 - 41855 4.1 - Term 41940 - 41975 4.9 41 23 Tu 1 4/0.300 - CDS 42002 - 42214 303 ## COG1278 Cold shock proteins - Prom 42375 - 42434 5.2 - Term 42437 - 42468 4.1 42 24 Tu 1 . - CDS 42495 - 42785 250 ## COG2944 Predicted transcriptional regulator + Prom 43002 - 43061 5.0 43 25 Tu 1 . + CDS 43219 - 43929 788 ## APECO1_2894 hypothetical protein + Term 43939 - 43969 0.2 - Term 43919 - 43964 6.3 44 26 Tu 1 . - CDS 43979 - 44953 861 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 44976 - 45035 3.3 - Term 45008 - 45047 7.6 45 27 Tu 1 . - CDS 45057 - 45716 213 ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 - Prom 45784 - 45843 2.4 + Prom 45692 - 45751 5.7 46 28 Tu 1 . + CDS 45869 - 48202 1880 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Term 48073 - 48108 6.1 47 29 Op 1 5/0.050 - CDS 48171 - 48611 418 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 48 29 Op 2 . - CDS 48608 - 49171 357 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Prom 49325 - 49384 6.5 + Prom 49193 - 49252 3.1 49 30 Tu 1 . + CDS 49329 - 50027 577 ## COG5571 Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion + Prom 50159 - 50218 3.5 50 31 Tu 1 . + CDS 50256 - 51464 1616 ## COG0477 Permeases of the major facilitator superfamily + Term 51549 - 51578 0.4 + Prom 51555 - 51614 7.4 51 32 Tu 1 . + CDS 51788 - 53479 1524 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase + Term 53534 - 53580 6.6 + TRNA 53571 - 53647 85.1 # Pro CGG 0 0 + Prom 54333 - 54392 3.2 52 33 Tu 1 . + CDS 54558 - 56165 2018 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 56386 - 56421 1.5 + Prom 56197 - 56256 3.0 53 34 Op 1 49/0.000 + CDS 56473 - 57492 355 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 54 34 Op 2 44/0.000 + CDS 57502 - 58404 1285 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 55 34 Op 3 44/0.000 + CDS 58415 - 59398 575 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 56 34 Op 4 . + CDS 59395 - 60399 802 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 60409 - 60439 1.7 57 35 Tu 1 . - CDS 60429 - 61700 1186 ## COG0814 Amino acid permeases - Prom 61801 - 61860 1.7 + Prom 61838 - 61897 2.3 58 36 Tu 1 . + CDS 62086 - 62283 92 ## G2583_4275 hypothetical protein + Term 62334 - 62372 7.0 - Term 62129 - 62188 1.2 59 37 Op 1 . - CDS 62370 - 64049 1366 ## B21_03339 hypothetical protein 60 37 Op 2 . - CDS 64046 - 64237 212 ## ECO103_4265 hypothetical protein 61 37 Op 3 . - CDS 64234 - 65805 862 ## B21_03337 hypothetical protein - Prom 65861 - 65920 4.8 + Prom 65839 - 65898 4.3 62 38 Op 1 . + CDS 66078 - 66266 253 ## SSON_3856 hypothetical protein 63 38 Op 2 1/1.000 + CDS 66278 - 67030 694 ## COG1192 ATPases involved in chromosome partitioning 64 38 Op 3 . + CDS 67027 - 69645 2503 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 65 38 Op 4 . + CDS 69656 - 71995 2385 ## ECO26_4622 cellulose synthase regulator protein 66 38 Op 5 4/0.300 + CDS 72002 - 73108 1106 ## COG3405 Endoglucanase Y 67 38 Op 6 5/0.050 + CDS 73090 - 76563 3271 ## COG0457 FOG: TPR repeat 68 39 Tu 1 . + CDS 76678 - 78633 1955 ## COG2200 FOG: EAL domain + Term 78658 - 78711 4.3 + Prom 78668 - 78727 3.6 69 40 Tu 1 . + CDS 78816 - 80102 1569 ## COG1301 Na+/H+-dicarboxylate symporters + Term 80115 - 80156 6.1 + Prom 80286 - 80345 4.0 70 41 Tu 1 . + CDS 80365 - 81819 1614 ## COG0612 Predicted Zn-dependent peptidases + Term 81820 - 81867 3.3 - Term 81808 - 81853 5.0 71 42 Tu 1 . - CDS 81915 - 82844 1027 ## COG0524 Sugar kinases, ribokinase family - Prom 83069 - 83128 2.6 + Prom 82879 - 82938 2.8 72 43 Op 1 4/0.300 + CDS 83076 - 83843 625 ## COG2200 FOG: EAL domain 73 43 Op 2 . + CDS 83913 - 85973 1670 ## COG2982 Uncharacterized protein involved in outer membrane biogenesis + Term 85977 - 86023 8.9 - Term 85968 - 86004 8.2 74 44 Tu 1 . - CDS 86155 - 87477 1718 ## COG0477 Permeases of the major facilitator superfamily - Prom 87625 - 87684 5.4 - Term 87837 - 87885 6.5 75 45 Op 1 3/0.750 - CDS 87888 - 88901 1054 ## COG1295 Predicted membrane protein 76 45 Op 2 . - CDS 88950 - 89831 725 ## COG0583 Transcriptional regulator - Prom 89905 - 89964 1.8 + Prom 90252 - 90311 4.3 77 46 Tu 1 . + CDS 90369 - 90971 455 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 90981 - 91030 8.4 - Term 90969 - 91018 8.4 78 47 Tu 1 . - CDS 91022 - 92671 1658 ## COG1626 Neutral trehalase - Prom 92782 - 92841 6.6 + Prom 92996 - 93055 4.1 79 48 Tu 1 . + CDS 93075 - 94472 1173 ## COG1858 Cytochrome c peroxidase + Term 94480 - 94521 8.8 80 49 Tu 1 . - CDS 94604 - 94750 87 ## - Prom 94822 - 94881 5.5 + Prom 94511 - 94570 6.0 81 50 Tu 1 . + CDS 94683 - 94923 163 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins Predicted protein(s) >gi|223713511|gb|ACDM01000087.1| GENE 1 309 - 917 729 202 aa, chain + ## HITS:1 COG:yibF KEGG:ns NR:ns ## COG: yibF COG0625 # Protein_GI_number: 16131463 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1 202 1 202 202 401 100.0 1e-112 MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECW FDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSE DELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPH LVKLVENLFSRESFARTEPPKA >gi|223713511|gb|ACDM01000087.1| GENE 2 1015 - 2406 1366 463 aa, chain + ## HITS:1 COG:ECs4468 KEGG:ns NR:ns ## COG: ECs4468 COG1921 # Protein_GI_number: 15833722 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 843 100.0 0 MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQMLDEAREVIRGSQTLPAW CENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAEAAVEAVAQAMRSPVTLEY DLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEI GGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNENTALLMKVHTSNYSIQGFTKAID EAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEPMPQELIAAGVSLVSFSGDKLLGGP QAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALSEKLPTLRLLTRS AEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLSQIGSGSLPVDRLPSAALTFTPHDGRGSH LESLAARWRELPVPVIGRIYDGRLWLDLRCLEDEQRFLEMLLK >gi|223713511|gb|ACDM01000087.1| GENE 3 2403 - 4247 1781 614 aa, chain + ## HITS:1 COG:selB KEGG:ns NR:ns ## COG: selB COG3276 # Protein_GI_number: 16131461 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Selenocysteine-specific translation elongation factor # Organism: Escherichia coli K12 # 1 614 1 614 614 1218 100.0 0 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPG HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA RVDEVERQVKEVLREYGFAEAKLFITAATEGRGMDALREHLLQLPEREHASQHSFRLAID RAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRVRALHAQNQPTETANAGQRIALN IAGDAEKEQINRGDWLLADVPPEPFTRVIVELQTHTPLTQWQPLHIHHAASHVTGRVSLL EDNLAELVFDTPLWLADNDRLVLRDISARNTLAGARVVMLNPPRRGKRKPEYLQWLASLA RAQSDADALSVHLERGAVNLADFAWARQLNGEGMRELLQQPGYIQAGYSLLNAPVAARWQ RKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLLLIEKMRESGDIHSHHGWLHL PDHKAGFSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV KDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG NDHLLRDALLFPEK >gi|223713511|gb|ACDM01000087.1| GENE 4 4437 - 5588 1357 383 aa, chain + ## HITS:1 COG:ECs4466 KEGG:ns NR:ns ## COG: ECs4466 COG1454 # Protein_GI_number: 15833720 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1 383 1 383 383 704 99.0 0 MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNI FSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDY EGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLM IGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALKAVTMIAENLPLAVEDGSNAKAR EAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSKVAAARL RDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD ACGFTNPIQATHEEIVAIYRAAM >gi|223713511|gb|ACDM01000087.1| GENE 5 5753 - 7291 1814 512 aa, chain + ## HITS:1 COG:aldB KEGG:ns NR:ns ## COG: aldB COG1012 # Protein_GI_number: 16131459 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 512 31 542 542 1074 100.0 0 MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQNLTPVTGQLLCEVASSG KRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETS AADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWK MAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGVVNVVNGAGGVIGEYLATSKRIA KVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFA FNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSVTQMGAQVSHGQLETILN YIDIGKKEGADVLTGGRRKLLEGELKDGYYLEPTILFGQNNMRVFQEEIFGPVLAVTTFK TMEEALELANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQS GIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF >gi|223713511|gb|ACDM01000087.1| GENE 6 7510 - 7722 133 70 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_3755 NR:ns ## KEGG: ECIAI1_3755 # Name: not_defined # Def: conserved hypothetical protein, putative membrane protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 70 1 70 70 124 100.0 1e-27 MCCLVFQQDEVYHIEIVELLAKLMNNSSKTSTVQIKRIKPSIIYRLLLIGLGSPMVIYGL VRPLTIETRD >gi|223713511|gb|ACDM01000087.1| GENE 7 7836 - 8159 358 107 aa, chain + ## HITS:1 COG:no KEGG:B21_03393 NR:ns ## KEGG: B21_03393 # Name: yiaW # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 107 1 107 107 199 100.0 3e-50 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE >gi|223713511|gb|ACDM01000087.1| GENE 8 8165 - 9301 1036 378 aa, chain + ## HITS:1 COG:yiaV KEGG:ns NR:ns ## COG: yiaV COG1566 # Protein_GI_number: 16131457 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 378 1 378 378 726 100.0 0 MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKA VISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRAL GAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKS SAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTY AASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPA VPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVM RKVLLRMTSWVHYLYLDH >gi|223713511|gb|ACDM01000087.1| GENE 9 9298 - 10272 704 324 aa, chain - ## HITS:1 COG:yiaU KEGG:ns NR:ns ## COG: yiaU COG0583 # Protein_GI_number: 16131456 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 324 1 324 324 661 100.0 0 MTKLQLKYRELKIISVIAASENISHAATVLGIAQANVSKYLADFESKVGLKVFDRTTRQL MLTPFGTALLPYINDMLDRNEQLNNFIADYKHEKRGRVTIYAPTGIITYLSKHVIDKIKD IGDITLSLKTCNLERNAFYEGVEFPDDCDVLISYAPPKDESLVASFITQYAVTAYASQRY LEKHPISRPDELEHHSCILIDSMMIDDANIWRFNVAGSKEVRDYRVKGNYVCDNTQSALE LARNHLGIVFAPDKSVQSDLQDGTLVPCFQQPYEWWLDLVAIFRKREYQPWRVQYVLDEM LREIRHQLAQSQQLRPEQAAESED >gi|223713511|gb|ACDM01000087.1| GENE 10 10396 - 11136 737 246 aa, chain + ## HITS:1 COG:yiaT KEGG:ns NR:ns ## COG: yiaT COG3713 # Protein_GI_number: 16131455 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Escherichia coli K12 # 1 246 1 246 246 474 100.0 1e-134 MLINRNIVALFALPFMASATASELSIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVR QTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWG TVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESR RSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVT GVSWRF >gi|223713511|gb|ACDM01000087.1| GENE 11 11483 - 12178 576 231 aa, chain - ## HITS:1 COG:sgbE KEGG:ns NR:ns ## COG: sgbE COG0235 # Protein_GI_number: 16131454 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 231 1 231 231 464 100.0 1e-131 MLEQLKADVLAANLALPAHHLVTFTWGNVSAVDETRQWMVIKPSGVEYDVMTADDMVVVE IASGKVVEGSKKPSSDTPTHLALYRRYAEIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD YFYGAIPCTRQMTAEEINGEYEYQTGEVIIETFEERGRSPAQIPAVLVHSHGPFAWGKNA ADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELLDKHYLRKHGANAYYGQ >gi|223713511|gb|ACDM01000087.1| GENE 12 12172 - 13032 946 286 aa, chain - ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 1 286 12 297 297 576 99.0 1e-164 MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRTSLVA AMIETGVGIPSMCLSAHRRFPFGSRDEAVRERAREIMSKAIRLARDLGIRTIQLAGYDVY YEDHDEGTRQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKWDEMLASPWFTV YPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTGQSPGQFRDVPFGEGCVDFVGIF KTLHKLNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC >gi|223713511|gb|ACDM01000087.1| GENE 13 13025 - 13687 799 220 aa, chain - ## HITS:1 COG:sgbH KEGG:ns NR:ns ## COG: sgbH COG0269 # Protein_GI_number: 16131452 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Escherichia coli K12 # 1 220 1 220 220 406 100.0 1e-113 MSRPLLQLALDHSSLEAAQRDVTLLKDSVDIVEAGTILCLNEGLGAVKALREQCPDKIIV ADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAMAQRCGGEIQIELFGNWTLD DARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPADLPLF KDIRVKAFIAGRALAGAANPAQVAGDFHAQIDAIWGGARA >gi|223713511|gb|ACDM01000087.1| GENE 14 13641 - 15179 1244 512 aa, chain - ## HITS:1 COG:lyxK KEGG:ns NR:ns ## COG: lyxK COG1070 # Protein_GI_number: 16131451 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 474 1 474 498 995 100.0 0 MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIR ALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPE KLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISE SNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGG LFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEA SPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQ AIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLR IELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKNINVIS ISLPHFRAFTPALRSTHYEPTTSATGPRPLIT >gi|223713511|gb|ACDM01000087.1| GENE 15 15183 - 16169 392 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646731|ref|ZP_01719241.1| Ribosomal protein L22 [Algoriphagus sp. PR1] # 4 328 3 325 328 155 28 7e-37 MKLRSVTYALFIAGLAAFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELK LKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTL DGKVGDDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAF KVFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVI NKAKFDGLSPEFQQALVSSAQEAGNYQRKLVAEDQQKIIDGMKEAGVEVITDLDRKAFSD ALGNQVRDMFVKDVPQGADLLKAVDEVQ >gi|223713511|gb|ACDM01000087.1| GENE 16 16182 - 17462 754 426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 1 419 3 423 431 295 36 8e-79 IMAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMAQTLVNGADSFSLLAI PFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADTAAVA ALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGM MMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIWALFLPVIIIGGFRSGLFTPTE AGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTSVVMFLVASAQVSAWLITIAELPM MVSDLLQPLVDSPRLLFIVIMVAILIVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGV MFIINCSIGLITPPIGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVVFVFIPDLIIL PLKWIN >gi|223713511|gb|ACDM01000087.1| GENE 17 17462 - 17935 302 157 aa, chain - ## HITS:1 COG:yiaM KEGG:ns NR:ns ## COG: yiaM COG3090 # Protein_GI_number: 16131448 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, small permease component # Organism: Escherichia coli K12 # 1 157 1 157 157 284 100.0 4e-77 MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDN AHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLKTIQDWSDYSPILGLPIGL MYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA >gi|223713511|gb|ACDM01000087.1| GENE 18 18053 - 18520 478 155 aa, chain - ## HITS:1 COG:yiaL KEGG:ns NR:ns ## COG: yiaL COG2731 # Protein_GI_number: 16131447 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 155 1 155 155 315 100.0 2e-86 MIFGHIAQPNPCRLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYTQIIDLTTREAVVN RPEVHRRYIDIQFLAWGEEKIGIAIDTGNNKVSESLLEQRNIIFYHDSEHESFIEMIPGS YAIFFPQDVHRPGCIMQTASEIRKIVVKVALTALN >gi|223713511|gb|ACDM01000087.1| GENE 19 18532 - 19530 1096 332 aa, chain - ## HITS:1 COG:yiaK KEGG:ns NR:ns ## COG: yiaK COG2055 # Protein_GI_number: 16131446 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1 332 1 332 332 674 100.0 0 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGD IIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRG GSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSY GMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLL SDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAI RLPGHEFTTLLAENRRNGITVDDSVWAKIQAL >gi|223713511|gb|ACDM01000087.1| GENE 20 19731 - 20579 726 282 aa, chain + ## HITS:1 COG:yiaJ KEGG:ns NR:ns ## COG: yiaJ COG1414 # Protein_GI_number: 16131445 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 282 1 282 282 566 100.0 1e-161 MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVH RLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETIN FSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQ HEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSI SLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT >gi|223713511|gb|ACDM01000087.1| GENE 21 20681 - 21154 132 157 aa, chain + ## HITS:1 COG:yiaI KEGG:ns NR:ns ## COG: yiaI COG1142 # Protein_GI_number: 16131444 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli K12 # 1 157 1 157 157 258 100.0 4e-69 MNRFIIADATKCIGCRTCEVACAVSHHENQDCAALSPDEFISRIRVIKDHCWTTAVACHQ CEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAMEVVSSRKKARAIKCDL CWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV >gi|223713511|gb|ACDM01000087.1| GENE 22 21305 - 22558 1269 417 aa, chain - ## HITS:1 COG:avtA KEGG:ns NR:ns ## COG: avtA COG3977 # Protein_GI_number: 16131443 # Func_class: E Amino acid transport and metabolism # Function: Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase # Organism: Escherichia coli K12 # 1 417 1 417 417 872 99.0 0 MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIPEMQDYFQTLLTDMLES GKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNGSQSAFFYLFNLFAGR RADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLHIGEET GMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLWNPN IVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGIISLAPGGIGPAMMCEMIKRNDLLR LSETVIKPFYYQRVQETIAIIRRYLPENRCLIHKPEGAIFLWLWFKDLPITTEQLYQRLK ARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYVPEPEKIEAGVKILAEEIERAWAESH >gi|223713511|gb|ACDM01000087.1| GENE 23 22736 - 24766 1726 676 aa, chain - ## HITS:1 COG:malS KEGG:ns NR:ns ## COG: malS COG0366 # Protein_GI_number: 16131442 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1 676 1 676 676 1367 100.0 0 MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQP ADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRE CPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDT SAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQ LGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSA HQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHS FNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVF YKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAA LREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQ MDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFG PTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFV REHGDDKVLVVWAGQQ >gi|223713511|gb|ACDM01000087.1| GENE 24 25338 - 25910 465 190 aa, chain + ## HITS:1 COG:ECs4453 KEGG:ns NR:ns ## COG: ECs4453 COG2992 # Protein_GI_number: 15833707 # Func_class: R General function prediction only # Function: Uncharacterized FlgJ-related protein # Organism: Escherichia coli O157:H7 # 1 190 85 274 274 348 100.0 4e-96 MPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLE RVDIIPTSMVATMAAAESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKE SVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQ DNQRLIAAHM >gi|223713511|gb|ACDM01000087.1| GENE 25 26106 - 27284 998 392 aa, chain - ## HITS:1 COG:xylR_1 KEGG:ns NR:ns ## COG: xylR_1 COG1609 # Protein_GI_number: 16131440 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 265 1 265 265 542 100.0 1e-154 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGV IADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN RFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQT LPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR QMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACK GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMC GYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML >gi|223713511|gb|ACDM01000087.1| GENE 26 27362 - 28543 1091 393 aa, chain - ## HITS:1 COG:ECs4451 KEGG:ns NR:ns ## COG: ECs4451 COG4214 # Protein_GI_number: 15833705 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, permease component # Organism: Escherichia coli O157:H7 # 1 393 1 393 393 596 100.0 1e-170 MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNL LRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLG LLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPAS TGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRG VPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMV AIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNG MSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS >gi|223713511|gb|ACDM01000087.1| GENE 27 28521 - 30062 231 513 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 254 483 7 240 329 93 29 3e-18 MPYLLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYE GEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMT LRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSV LLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVG RELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGR TETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKN ITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCL LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHE GKLKANLINHNLTQEQVMEAALRSEHHVEKQSV >gi|223713511|gb|ACDM01000087.1| GENE 28 30140 - 31132 919 330 aa, chain - ## HITS:1 COG:xylF KEGG:ns NR:ns ## COG: xylF COG4213 # Protein_GI_number: 16131437 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, periplasmic component # Organism: Escherichia coli K12 # 1 330 1 330 330 579 100.0 1e-165 MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDAD IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGK IKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDV PSRLLTPIDVNKNNIKDTVIKDGFHKESEL >gi|223713511|gb|ACDM01000087.1| GENE 29 31498 - 32820 1375 440 aa, chain + ## HITS:1 COG:xylA KEGG:ns NR:ns ## COG: xylA COG2115 # Protein_GI_number: 16131436 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Escherichia coli K12 # 1 440 1 440 440 905 100.0 0 MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRFAACYWHTFCWNGADMF GVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVPFYCFHDVDVSPEGASLKEYINNFA QMVDVLAGKQEESGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMEATHKL GGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRG DAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM DTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPV HQSGRQEQLENLVNHYLFDK >gi|223713511|gb|ACDM01000087.1| GENE 30 32892 - 34346 918 484 aa, chain + ## HITS:1 COG:xylB KEGG:ns NR:ns ## COG: xylB COG1070 # Protein_GI_number: 16131435 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 484 1 484 484 923 100.0 0 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALG DQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITG NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVA KRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAAGAVG VGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDW AAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNE LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGG DVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAYQPRRETFRRLYQQLL PLMA >gi|223713511|gb|ACDM01000087.1| GENE 31 34515 - 34856 357 113 aa, chain + ## HITS:1 COG:yiaB KEGG:ns NR:ns ## COG: yiaB COG4682 # Protein_GI_number: 16131434 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 113 5 117 117 193 100.0 6e-50 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA >gi|223713511|gb|ACDM01000087.1| GENE 32 34902 - 35339 472 145 aa, chain + ## HITS:1 COG:ECs4445 KEGG:ns NR:ns ## COG: ECs4445 COG4682 # Protein_GI_number: 15833699 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 145 2 146 146 268 100.0 2e-72 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA VQKNIRDAGINPPKETQVTQEEYSE >gi|223713511|gb|ACDM01000087.1| GENE 33 35381 - 36376 801 331 aa, chain - ## HITS:1 COG:yiaH KEGG:ns NR:ns ## COG: yiaH COG3274 # Protein_GI_number: 16131432 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 331 1 331 331 606 100.0 1e-173 MQPKIYWIDNLRGIACLMVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMI SGYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLWF FFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYINGDT FYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADTWYLYC GPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGIELKNWPI LDIIWIFCATLAASLLLSMLVQRIDRNRLVS >gi|223713511|gb|ACDM01000087.1| GENE 34 36554 - 36850 286 98 aa, chain + ## HITS:1 COG:no KEGG:JW3532 NR:ns ## KEGG: JW3532 # Name: ysaB # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 98 2 99 99 194 100.0 6e-49 MMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDV TAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR >gi|223713511|gb|ACDM01000087.1| GENE 35 36945 - 37856 1151 303 aa, chain + ## HITS:1 COG:ECs4443 KEGG:ns NR:ns ## COG: ECs4443 COG0752 # Protein_GI_number: 15833697 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 303 1 303 303 634 100.0 0 MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMAAAYVQ PSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGMDPTIHDIRFVEDN WENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSV YDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALENPL PLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCN KDK >gi|223713511|gb|ACDM01000087.1| GENE 36 37866 - 39935 2917 689 aa, chain + ## HITS:1 COG:glyS KEGG:ns NR:ns ## COG: glyS COG0751 # Protein_GI_number: 16131430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Escherichia coli K12 # 1 689 1 689 689 1326 100.0 0 MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVAN LAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRA HVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHTVTLLLGDKVIPATILGI QSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIADYEERKAKIKADAEEAARKIGGN ADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPN FIFVANIESKDPQQIISGNEKVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGT LRDKTDRIQALAGWIAEQIGADVNHATRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHD GEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFAL RRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEG YTVDTIQAVLARRPTRPADFDARMKAVSHFRTLDAAAALAAANKRVSNILAKSDEVLSDR VNASTLKEPEEIKLAMQVVVLRDKLEPYFTEGRYQDALVELAELREPVDAFFDKVMVMVD DKELRINRLTMLEKLRELFLRVADISLLQ >gi|223713511|gb|ACDM01000087.1| GENE 37 40214 - 40579 185 121 aa, chain - ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 121 163 283 283 246 100.0 9e-66 MNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAV VECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPR V >gi|223713511|gb|ACDM01000087.1| GENE 38 40520 - 40807 58 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|10955443|ref|NP_065295.1| ## NR: gi|10955443|ref|NP_065295.1| hypothetical protein R721_05 [Escherichia coli] # 1 95 24 118 118 188 100.0 1e-46 MLVRIKLFECLIEHILNHVHHWSFRKAVRNNFVVEEIYYWRQIQLAPIDCKFSNIGNPLL VWPRSLEISLENIRGGLPYLSSVRAVSLDLNRCFK >gi|223713511|gb|ACDM01000087.1| GENE 39 41062 - 41583 133 173 aa, chain - ## HITS:1 COG:yi5A KEGG:ns NR:ns ## COG: yi5A COG2963 # Protein_GI_number: 16131428 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 173 1 173 173 320 99.0 7e-88 MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKG VSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTK RNIAISVDPEKAVSALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK >gi|223713511|gb|ACDM01000087.1| GENE 40 41663 - 41815 69 50 aa, chain + ## HITS:1 COG:no KEGG:ECP_3660 NR:ns ## KEGG: ECP_3660 # Name: not_defined # Def: small toxic polypeptide # Organism: E.coli_536 # Pathway: not_defined # 1 50 21 70 70 90 100.0 1e-17 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLACKLKE >gi|223713511|gb|ACDM01000087.1| GENE 41 42002 - 42214 303 70 aa, chain - ## HITS:1 COG:ECs4441 KEGG:ns NR:ns ## COG: ECs4441 COG1278 # Protein_GI_number: 15833695 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 70 1 70 70 122 100.0 1e-28 MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK GPAAGNVTSL >gi|223713511|gb|ACDM01000087.1| GENE 42 42495 - 42785 250 96 aa, chain - ## HITS:1 COG:ECs4440 KEGG:ns NR:ns ## COG: ECs4440 COG2944 # Protein_GI_number: 15833694 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 96 1 96 96 164 100.0 5e-41 MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKIDDFARVLGVSV AMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME >gi|223713511|gb|ACDM01000087.1| GENE 43 43219 - 43929 788 236 aa, chain + ## HITS:1 COG:no KEGG:APECO1_2894 NR:ns ## KEGG: APECO1_2894 # Name: yiaF # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 236 41 276 276 432 100.0 1e-120 MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQK KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVM VGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ >gi|223713511|gb|ACDM01000087.1| GENE 44 43979 - 44953 861 324 aa, chain - ## HITS:1 COG:yiaE KEGG:ns NR:ns ## COG: yiaE COG1052 # Protein_GI_number: 16131424 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1 324 5 328 328 644 99.0 0 MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFAEAEGLLGSNENVNAAL LEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADMLMALVLSTARRVVE VAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH KEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV VDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAAC AVDNLIDALQGKVEKNCVNPHVAD >gi|223713511|gb|ACDM01000087.1| GENE 45 45057 - 45716 213 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 113 214 243 344 347 86 37 4e-16 MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRG KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQG VDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL >gi|223713511|gb|ACDM01000087.1| GENE 46 45869 - 48202 1880 777 aa, chain + ## HITS:1 COG:bisC KEGG:ns NR:ns ## COG: bisC COG0243 # Protein_GI_number: 16131422 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 39 777 1 739 739 1538 100.0 0 MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQSAVRDQVHSNTRVRFP MVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWRSN GVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSD VVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVA PHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAKTAEWAAEIC GVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLS YHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQHNGMNRHFPD IRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDL TMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFTEGKSELQWLETFY NVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPLAHPLKTASGKI EIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELY AVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICIHEGAWPDL DLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS >gi|223713511|gb|ACDM01000087.1| GENE 47 48171 - 48611 418 146 aa, chain - ## HITS:1 COG:yiaC KEGG:ns NR:ns ## COG: yiaC COG0454 # Protein_GI_number: 16131421 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1 146 1 146 146 285 100.0 2e-77 MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAYLANAQNWVWEEDGKLL GFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLMLEVYQKNQPAINFYQAQGF HIVDCAWQDETQLPTWIMSWPVVQTL >gi|223713511|gb|ACDM01000087.1| GENE 48 48608 - 49171 357 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 181 1 181 185 142 38 8e-33 MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSFV NHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCC CYPGNKP >gi|223713511|gb|ACDM01000087.1| GENE 49 49329 - 50027 577 232 aa, chain + ## HITS:1 COG:yhjY KEGG:ns NR:ns ## COG: yhjY COG5571 # Protein_GI_number: 16131419 # Func_class: N Cell motility # Function: Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion # Organism: Escherichia coli K12 # 1 232 3 234 234 426 100.0 1e-119 MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGLSTERYTWDSDHQPDYND ILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSM YNEFGDSTTTLTDPLWHASVSTLGWRVDSRLGDLRPWAQISYNQQFGENIWKAQSGLSRM TATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTNNSDYLYTMGVSARF >gi|223713511|gb|ACDM01000087.1| GENE 50 50256 - 51464 1616 402 aa, chain + ## HITS:1 COG:yhjX KEGG:ns NR:ns ## COG: yhjX COG0477 # Protein_GI_number: 16131418 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 402 1 402 402 687 100.0 0 MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAPVSQVAFSFGLLSLGLA ISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMMLWLSAGVLVGLADGAGYLL TLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALLMIV FGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFA PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIA SLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGSL >gi|223713511|gb|ACDM01000087.1| GENE 51 51788 - 53479 1524 563 aa, chain + ## HITS:1 COG:yhjW KEGG:ns NR:ns ## COG: yhjW COG2194 # Protein_GI_number: 16131417 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 563 12 574 574 1156 100.0 0 MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWKGISAVVELAATVLVTF FLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVG LNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRSLAVVVLAGIMVWAPIRLLDI QQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAWARVDESSDNNSLLNPAKKFTYQ APQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKLAQEKNLAAFRGYSCDTATKLSLRC MFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGA EPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLIILHTKGSHFNYTQRYPRSFAQWKPECIG VDSGCTKAQMINSYDNSVTYVDHFISSVIDQVRDKKAIVFYAADHGESINEREHLHGTPR ELAPPEQFRVPMMVWMSDKYLENPANAQAFAQLKKEADMKVPRRHVELYDTIMGCLGYTS PDGGINENNNWCHIPQAKEAAAN >gi|223713511|gb|ACDM01000087.1| GENE 52 54558 - 56165 2018 535 aa, chain + ## HITS:1 COG:dppA KEGG:ns NR:ns ## COG: dppA COG0747 # Protein_GI_number: 16131416 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 535 1 535 535 1091 100.0 0 MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPL YNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVF SFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAM DFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQID TLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQ KKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAK ALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKR AKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDH NKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE >gi|223713511|gb|ACDM01000087.1| GENE 53 56473 - 57492 355 339 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 66 333 43 310 320 141 29 1e-32 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK PMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVL AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP LTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR RDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK >gi|223713511|gb|ACDM01000087.1| GENE 54 57502 - 58404 1285 300 aa, chain + ## HITS:1 COG:ECs4422 KEGG:ns NR:ns ## COG: ECs4422 COG1173 # Protein_GI_number: 15833676 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 300 1 300 300 486 100.0 1e-137 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQ FRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILG LIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLT RAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFL GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ >gi|223713511|gb|ACDM01000087.1| GENE 55 58415 - 59398 575 327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 315 11 324 329 226 40 4e-58 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ GGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAE EPALNMLADGRQSKCHYPLDDAGRPTL >gi|223713511|gb|ACDM01000087.1| GENE 56 59395 - 60399 802 334 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 328 2 329 329 313 47 2e-84 MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCG KSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQ ILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDP DVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC VEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCR RRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR >gi|223713511|gb|ACDM01000087.1| GENE 57 60429 - 61700 1186 423 aa, chain - ## HITS:1 COG:yhjV KEGG:ns NR:ns ## COG: yhjV COG0814 # Protein_GI_number: 16131411 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli K12 # 1 423 1 423 423 702 100.0 0 MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPA TWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDS ASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFA MIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRL ALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITST VLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWV SFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLK LIE >gi|223713511|gb|ACDM01000087.1| GENE 58 62086 - 62283 92 65 aa, chain + ## HITS:1 COG:no KEGG:G2583_4275 NR:ns ## KEGG: G2583_4275 # Name: ldrD # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 65 16 80 80 125 96.0 6e-28 MHLTTPRGLILTLDHSRIAAKRCHYNTGGYMTFAELGMAFWHDLAAPVIAGILASMIVNW LNKRK >gi|223713511|gb|ACDM01000087.1| GENE 59 62370 - 64049 1366 559 aa, chain - ## HITS:1 COG:no KEGG:B21_03339 NR:ns ## KEGG: B21_03339 # Name: bcsG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 559 1 559 559 1088 100.0 0 MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFAAFLLMPLPR YSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFSTDYLIDLVTRFINWQMIG AIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLWPAGQPTTTVTTTGGNAAA TVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEAKRKSTFPSSLPADAQPFELLVI NICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYSGPAAIRLLRASCGQTSHTNLYQ PANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSELMDQTNLPVILLGFD GSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDE LDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQVSGLRDIPSPSITDVPVGVKFFGMKAP HQGAPIVIEQPSSFLAISDLVVRVLDGKIFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQ YQDKPYVRLNGGDWVPYPQ >gi|223713511|gb|ACDM01000087.1| GENE 60 64046 - 64237 212 63 aa, chain - ## HITS:1 COG:no KEGG:ECO103_4265 NR:ns ## KEGG: ECO103_4265 # Name: bcsF # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 63 1 63 63 104 100.0 9e-22 MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARA TKK >gi|223713511|gb|ACDM01000087.1| GENE 61 64234 - 65805 862 523 aa, chain - ## HITS:1 COG:no KEGG:B21_03337 NR:ns ## KEGG: B21_03337 # Name: bcsE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 523 1 523 523 1065 100.0 0 MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVIS MDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQ NIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQ HLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPP LSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRE NTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQP LKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIM TIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPE QWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS >gi|223713511|gb|ACDM01000087.1| GENE 62 66078 - 66266 253 62 aa, chain + ## HITS:1 COG:no KEGG:SSON_3856 NR:ns ## KEGG: SSON_3856 # Name: yhjR # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 62 1 62 62 108 100.0 7e-23 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ QK >gi|223713511|gb|ACDM01000087.1| GENE 63 66278 - 67030 694 250 aa, chain + ## HITS:1 COG:yhjQ KEGG:ns NR:ns ## COG: yhjQ COG1192 # Protein_GI_number: 16131406 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Escherichia coli K12 # 9 250 1 242 242 477 99.0 1e-134 MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLLRLSFNVDFTHRQGWAR AMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRLSDICSGLQQLKASGRYQW ILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQALPDGAHILINDFRIGSQVQ DDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEYRSDALAAEEILTLANWCLLNYS GLKTPVGSAS >gi|223713511|gb|ACDM01000087.1| GENE 64 67027 - 69645 2503 872 aa, chain + ## HITS:1 COG:yhjO KEGG:ns NR:ns ## COG: yhjO COG1215 # Protein_GI_number: 16131405 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 872 17 888 888 1811 100.0 0 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL MLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAE TYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIFVPTYNEDLNVVKNTIYASLGID WPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTHEHAKAGNINNALKYAKGEFVSIFD CDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQ DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAA GLATESLSAHIGQRIRWARGMVQIFRLDNPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIF LTAPLAFLLLHAYIIYAPALMIALFVLPHMIHASLTNSKIQGKYRHSFWSEIYETVLAWY IAPPTLVALINPHKGKFNVTAKGGLVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYG PPTEMLTVVVSMVWVFYNLIVLGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCT VQDFSDGGLGIKINGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQ QHIDFVQCTFARADTWALWQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRV LTSLVSWVVSFIPRRPERSETAQPSDQALAQQ >gi|223713511|gb|ACDM01000087.1| GENE 65 69656 - 71995 2385 779 aa, chain + ## HITS:1 COG:no KEGG:ECO26_4622 NR:ns ## KEGG: ECO26_4622 # Name: bcsB # Def: cellulose synthase regulator protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 779 1 779 779 1516 100.0 0 MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGAD APVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYTPS PSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQD VCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPV IEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDA PNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTM PPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGF PFSRMADLSQTITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDAD IMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGA MAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE >gi|223713511|gb|ACDM01000087.1| GENE 66 72002 - 73108 1106 368 aa, chain + ## HITS:1 COG:yhjM KEGG:ns NR:ns ## COG: yhjM COG3405 # Protein_GI_number: 16131403 # Func_class: G Carbohydrate transport and metabolism # Function: Endoglucanase Y # Organism: Escherichia coli K12 # 1 368 1 368 368 724 100.0 0 MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVIDPSDARKITTSEGQSYG MFSALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVW MAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVGFAEDNSWRFNP SYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFSPDWVRYEKDKGWQLKAEKTLIS SYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTEKNGYPPEKVDVATGKAQGKGPVGF SAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNYVLTLFGQGWDQHRFRFSTKGELLPDW GQECANSH >gi|223713511|gb|ACDM01000087.1| GENE 67 73090 - 76563 3271 1157 aa, chain + ## HITS:1 COG:yhjL KEGG:ns NR:ns ## COG: yhjL COG0457 # Protein_GI_number: 16131402 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Escherichia coli K12 # 11 1157 20 1166 1166 2122 100.0 0 MRKFTLNIFTLSLGLAVMPMVEAAPTAQQQLLEQVRLGEATHREDLVQQSLYRLELIDPN NPDVVAARFRSLLRQGDIDGAQKQLDRLSQLAPSSNAYKSSRTTMLLSTPDGRQALQQAR LQATTGHAEEAVASYNKLFNGAPPEGDIAVEYWSTVAKIPARRGEAINQLKRINADAPGN TGLQNNLALLLFSSDRRDEGFAVLEQMAKSNAGREGASKIWYGQIKDMPVSDASVSALKK YLSIFSDGDSVAAAQSQLAEQQKQLADPAFRARAQGLAAVDSGMAGKAIPELQQAVRANP KDSEALGALGQAYSQKGDRANAVANLEKALALDPHSSNNDKWNSLLKVNRYWLAIQQGDA ALKANNPDRAERLFQQARNVDNTDSYAVLGLGDVAMARKDYPAAERYYQQTLRMDSGNTN AVRGLANIYRQQSPEKAEAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA AALQRQRLALDPGSVWITYRLSQDLWQAGQRSQADTLMRNLAQQKSNDPEQVYAYGLYLS GHDQDRAALAHINSLPRAQWNSNIQELVNRLQSDQVLETANRLRESGKEAEAEAMLRQQP PSTRIDLTLADWAQQRRDYTAARAAYQNVLTREPANADAILGLTEVDIAAGDKAAARSQL AKLPATDNASLNTQRRVALAQAQLGDTAAAQRTFNKLIPQAKSQPPSMESAMVLRDGAKF EAQAGDPTQALETYKDAMVASGVTTTRPQDNDTFTRLTRNDEKDDWLKRGVRSDAADLYR QQDLNVTLEHDYWGSSGTGGYSDLKAHTTMLQVDAPYSDGRMFFRSDFVNMNVGSFSTNA DGKWDDNWGTCTLQDCSGNRSQSDSGASVAVGWRNDVWSWDIGTTPMGFNVVDVVGGISY SDDIGPLGYTVNAHRRPISSSLLAFGGQKDSPSNTGKKWGGVRADGVGLSLSYDKGEANG VWASLSGDQLTGKNVEDNWRVRWMTGYYYKVINQNNRRVTIGLNNMIWHYDKDLSGYSLG QGGYYSPQEYLSFAIPVMWRERTENWSWELGASGSWSHSRTKTMPRYPLMNLIPTDWQEE AARQSNDGGSSQGFGYTARALLERRVTSNWFVGTAIDIQQAKDYAPSHFLLYVRYSAAGW QGDMDLPPQPLIPYADW >gi|223713511|gb|ACDM01000087.1| GENE 68 76678 - 78633 1955 651 aa, chain + ## HITS:1 COG:ECs4409_3 KEGG:ns NR:ns ## COG: ECs4409_3 COG2200 # Protein_GI_number: 15833663 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 # 389 651 1 263 263 507 99.0 1e-143 MAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSAILKGDIPEAEA ILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPVMVTRLFELPVQISLGVYSLERPA NPQPIAYLVLQADSFRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINRLILHPLRNIAR ELNAIPAKELVGHQLALPRLHQDDEIGMLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLP NKALLMEMLEQVVARKQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRM ILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDL TAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQP QVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQ ERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAIL RPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPGDSSMIAAIIMLA QSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK >gi|223713511|gb|ACDM01000087.1| GENE 69 78816 - 80102 1569 428 aa, chain + ## HITS:1 COG:dctA KEGG:ns NR:ns ## COG: dctA COG1301 # Protein_GI_number: 16131400 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli K12 # 1 428 1 428 428 733 100.0 0 MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKLIKMIIAPVIFCTVVTG IAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAKAVAVY ADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLFGFALHRLGSKGQLIFNVIES FSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQLGQLIICFYITCILFVVLVLGS IAKATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSF NLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLIVLLLSSKGAAGVTGSGFIVLAATLSA VGHLPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWVKELDHKKLDDVLNNRAPD GKTHELSS >gi|223713511|gb|ACDM01000087.1| GENE 70 80365 - 81819 1614 484 aa, chain + ## HITS:1 COG:yhjJ KEGG:ns NR:ns ## COG: yhjJ COG0612 # Protein_GI_number: 16131399 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Escherichia coli K12 # 1 484 15 498 498 899 100.0 0 MMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQ SGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDL LKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPAD PLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPT LSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALS ASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNAL VAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLN QDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDI PPAQ >gi|223713511|gb|ACDM01000087.1| GENE 71 81915 - 82844 1027 309 aa, chain - ## HITS:1 COG:kdgK KEGG:ns NR:ns ## COG: kdgK COG0524 # Protein_GI_number: 16131398 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 309 74 382 382 626 100.0 1e-179 MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS QQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLESEQSAA ICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANGGKVIFDNNYRPRLWASKEET QQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAG EGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAEDAAKRGHLTASTVIQYRGA IIPREAMPA >gi|223713511|gb|ACDM01000087.1| GENE 72 83076 - 83843 625 255 aa, chain + ## HITS:1 COG:yhjH KEGG:ns NR:ns ## COG: yhjH COG2200 # Protein_GI_number: 16131397 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 1 255 2 256 256 508 100.0 1e-144 MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRLMAVELLTVVTHPLNPS QRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLASVNIDGPTLIALRQQPKI LRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLDDFGTGMANFSALSEVRYDYIKI ARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVETPEEWRDVQNSPAFAAQGWFLS RPAPIETLNTAVLAL >gi|223713511|gb|ACDM01000087.1| GENE 73 83913 - 85973 1670 686 aa, chain + ## HITS:1 COG:yhjG KEGG:ns NR:ns ## COG: yhjG COG2982 # Protein_GI_number: 16131396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Escherichia coli K12 # 1 686 6 691 691 1327 100.0 0 MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVW ERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPW IKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVS KADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGKIGGML ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLP DTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQ LRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFK GRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNL MEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASF ASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPA AALLALISPSEGEANQCRTILSQMKK >gi|223713511|gb|ACDM01000087.1| GENE 74 86155 - 87477 1718 440 aa, chain - ## HITS:1 COG:yhjE KEGG:ns NR:ns ## COG: yhjE COG0477 # Protein_GI_number: 16131395 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 440 1 440 440 683 100.0 0 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPT AATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATI GIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGT FLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLG TLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIG FGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMG LTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAA MAGLTLIALLLTHETRHQSL >gi|223713511|gb|ACDM01000087.1| GENE 75 87888 - 88901 1054 337 aa, chain - ## HITS:1 COG:yhjD KEGG:ns NR:ns ## COG: yhjD COG1295 # Protein_GI_number: 16131394 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 337 1 337 337 661 100.0 0 MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATER FNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLA ATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWV KYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFA NYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVL GLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP >gi|223713511|gb|ACDM01000087.1| GENE 76 88950 - 89831 725 293 aa, chain - ## HITS:1 COG:yhjC KEGG:ns NR:ns ## COG: yhjC COG0583 # Protein_GI_number: 16131393 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 293 31 323 323 589 100.0 1e-168 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS SHDRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTS HAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRIAV REALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEYLD >gi|223713511|gb|ACDM01000087.1| GENE 77 90369 - 90971 455 200 aa, chain + ## HITS:1 COG:yhjB KEGG:ns NR:ns ## COG: yhjB COG2197 # Protein_GI_number: 16131392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli K12 # 1 200 1 200 200 392 99.0 1e-109 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDLDGEF CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL YRRLEVKNRTQAAMMLNISS >gi|223713511|gb|ACDM01000087.1| GENE 78 91022 - 92671 1658 549 aa, chain - ## HITS:1 COG:ECs4399 KEGG:ns NR:ns ## COG: ECs4399 COG1626 # Protein_GI_number: 15833653 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli O157:H7 # 1 549 1 549 549 1113 100.0 0 MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR RLIGLYGEP >gi|223713511|gb|ACDM01000087.1| GENE 79 93075 - 94472 1173 465 aa, chain + ## HITS:1 COG:yhjA KEGG:ns NR:ns ## COG: yhjA COG1858 # Protein_GI_number: 16131390 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Escherichia coli K12 # 1 465 1 465 465 970 100.0 0 MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL PTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVF NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQG FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ >gi|223713511|gb|ACDM01000087.1| GENE 80 94604 - 94750 87 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAFAPKRESSSSERKSVNSFWSISNSLNLFEGNKKVGFIRNGSKALQA >gi|223713511|gb|ACDM01000087.1| GENE 81 94683 - 94923 163 80 aa, chain + ## HITS:1 COG:ECs4397 KEGG:ns NR:ns ## COG: ECs4397 COG0076 # Protein_GI_number: 15833651 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1 80 1 80 466 171 100.0 3e-43 MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNL ATFCQTWDDENVHKLMDLSI Prediction of potential genes in microbial genomes Time: Mon May 16 19:29:02 2011 Seq name: gi|223713510|gb|ACDM01000088.1| Escherichia sp. 4_1_40B cont1.88, whole genome shotgun sequence Length of sequence - 39530 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 25, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 456 - 1220 93 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 1405 - 1442 -0.9 + Prom 1365 - 1424 7.7 2 2 Tu 1 . + CDS 1588 - 2316 191 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 2388 - 2415 -0.1 3 3 Tu 1 . + CDS 2461 - 2742 134 ## gi|293412945|ref|ZP_06655613.1| predicted protein - Term 2622 - 2667 10.6 4 4 Op 1 27/0.000 - CDS 2679 - 5792 3112 ## COG0841 Cation/multidrug efflux pump 5 4 Op 2 2/0.750 - CDS 5817 - 6974 1044 ## COG0845 Membrane-fusion protein - Prom 7124 - 7183 2.6 6 5 Tu 1 . - CDS 7313 - 7840 405 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 7932 - 7991 4.4 - Term 8576 - 8621 12.6 7 6 Tu 1 . - CDS 8639 - 9211 554 ## COG3247 Uncharacterized conserved protein - Prom 9342 - 9401 5.2 + Prom 9319 - 9378 5.9 8 7 Op 1 . + CDS 9466 - 9798 511 ## EC55989_3953 acid-resistance protein + Term 9845 - 9887 0.4 + Prom 9811 - 9870 2.4 9 7 Op 2 . + CDS 9902 - 10240 323 ## SSON_3577 acid-resistance protein + Term 10258 - 10300 7.2 10 8 Tu 1 . + CDS 10304 - 10951 603 ## COG1285 Uncharacterized membrane protein - Term 10832 - 10877 0.5 11 9 Tu 1 . - CDS 10993 - 11523 370 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 11588 - 11647 5.8 12 10 Tu 1 . - CDS 11679 - 12245 641 ## COG3065 Starvation-inducible outer membrane lipoprotein - Prom 12426 - 12485 6.9 - Term 12255 - 12303 0.2 13 11 Tu 1 . - CDS 12493 - 13230 193 ## ECB_03353 hypothetical protein - Prom 13267 - 13326 3.5 - Term 14066 - 14099 0.0 14 12 Op 1 2/0.750 - CDS 14345 - 14770 578 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 15 12 Op 2 7/0.000 - CDS 14783 - 16072 1550 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 16 12 Op 3 . - CDS 16126 - 16479 246 ## COG0640 Predicted transcriptional regulators - Term 16856 - 16884 -1.0 17 13 Tu 1 . - CDS 17018 - 17191 98 ## ECBD_0240 hypothetical protein + Prom 16966 - 17025 4.6 18 14 Tu 1 . + CDS 17186 - 17302 83 ## + Term 17321 - 17359 6.1 - Term 17309 - 17347 8.6 19 15 Op 1 7/0.000 - CDS 17356 - 18708 502 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 20 15 Op 2 . - CDS 18780 - 19622 920 ## COG2961 Protein involved in catabolism of external DNA - Prom 19681 - 19740 4.1 + Prom 19710 - 19769 3.1 21 16 Op 1 5/0.500 + CDS 19825 - 21867 2624 ## COG0339 Zn-dependent oligopeptidases 22 16 Op 2 . + CDS 21875 - 22627 793 ## COG0500 SAM-dependent methyltransferases + Term 22636 - 22671 7.4 - Term 22620 - 22664 8.9 23 17 Tu 1 . - CDS 22676 - 24145 1649 ## COG3104 Dipeptide/tripeptide permease - Prom 24266 - 24325 6.2 - Term 24400 - 24439 7.1 24 18 Tu 1 . - CDS 24462 - 24896 641 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 25093 - 25152 5.2 + Prom 25070 - 25129 2.2 25 19 Tu 1 . + CDS 25341 - 25622 230 ## G2583_4220 universal stress protein B + Term 25830 - 25861 -0.9 - Term 25689 - 25725 2.4 26 20 Tu 1 . - CDS 25866 - 27365 1665 ## COG0306 Phosphate/sulphate permeases - Prom 27475 - 27534 6.9 + Prom 27450 - 27509 8.2 27 21 Tu 1 . + CDS 27597 - 28799 1035 ## COG2081 Predicted flavoproteins + Term 28829 - 28874 -0.9 - Term 29052 - 29093 3.0 28 22 Tu 1 . - CDS 29114 - 30121 499 ## G2583_4217 inner membrane protein YhiM - Prom 30340 - 30399 9.5 + Prom 30326 - 30385 10.9 29 23 Tu 1 . + CDS 30549 - 32156 321 ## ECB_03339 hypothetical protein + Term 32223 - 32265 2.6 + Prom 32281 - 32340 5.2 30 24 Tu 1 . + CDS 32418 - 34040 56 ## JW3455 hypothetical protein + Prom 34139 - 34198 3.6 31 25 Op 1 10/0.000 + CDS 34406 - 35473 1125 ## COG0845 Membrane-fusion protein 32 25 Op 2 45/0.000 + CDS 35470 - 38205 2736 ## COG1131 ABC-type multidrug transport system, ATPase component 33 25 Op 3 . + CDS 38205 - 39329 1226 ## COG0842 ABC-type multidrug transport system, permease component + Term 39337 - 39388 3.0 Predicted protein(s) >gi|223713510|gb|ACDM01000088.1| GENE 1 456 - 1220 93 254 aa, chain + ## HITS:1 COG:yhiX KEGG:ns NR:ns ## COG: yhiX COG2207 # Protein_GI_number: 16131388 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 254 21 274 274 497 100.0 1e-141 MVNGEYRYFNGGDLVFADASQIRVDKCVENFVFVSRDTLSLFLPMLKEEALNLHAHKKVS SLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQ PNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQ LIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQRLSNRDSAASIVAQG NFYGTDRSAEGIRL >gi|223713510|gb|ACDM01000088.1| GENE 2 1588 - 2316 191 242 aa, chain + ## HITS:1 COG:ECs4395 KEGG:ns NR:ns ## COG: ECs4395 COG2207 # Protein_GI_number: 15833649 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 242 1 242 242 472 100.0 1e-133 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT FS >gi|223713510|gb|ACDM01000088.1| GENE 3 2461 - 2742 134 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293412945|ref|ZP_06655613.1| ## NR: gi|293412945|ref|ZP_06655613.1| predicted protein [Escherichia coli B354] # 1 84 1 84 93 140 98.0 3e-32 MFGIIKLTIHTITGMWVSIVLFKLMTNGWSGFYFQCCVLSLVFLTVSWLLSGEWLAGKSK AEPSCSTLLSFTRYAFLKRAKRCSTTTKKTGTK >gi|223713510|gb|ACDM01000088.1| GENE 4 2679 - 5792 3112 1037 aa, chain - ## HITS:1 COG:yhiV KEGG:ns NR:ns ## COG: yhiV COG0841 # Protein_GI_number: 16131386 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1037 1 1037 1037 1897 99.0 0 MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRL QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAL DTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQ NFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVI AEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLL SVFVAMSLTPALCATILKAAPEGGHKPNALFARFNTLFEKSTQHYTDSTRSLLRCTGRYM VVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKE KDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSINKAV VFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGLE DTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRML PDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKNTGDAMK FMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVM LVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIE AIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFV PVFFVVVEHLFARFKKA >gi|223713510|gb|ACDM01000088.1| GENE 5 5817 - 6974 1044 385 aa, chain - ## HITS:1 COG:yhiU KEGG:ns NR:ns ## COG: yhiU COG0845 # Protein_GI_number: 16131385 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 385 1 385 385 685 99.0 0 MNRRRKLLIPLLFCGAMLTACDDKSAENATAMTPEVGVVTLSPGSVNVLSELPGRTVPYE VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARI TFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVS GKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQN VLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGL QRIRPGIKARAISSSQENASTESKQ >gi|223713510|gb|ACDM01000088.1| GENE 6 7313 - 7840 405 175 aa, chain - ## HITS:1 COG:ECs4392 KEGG:ns NR:ns ## COG: ECs4392 COG2771 # Protein_GI_number: 15833646 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 175 1 175 175 302 100.0 2e-82 MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKF LEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQ FKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSYF >gi|223713510|gb|ACDM01000088.1| GENE 7 8639 - 9211 554 190 aa, chain - ## HITS:1 COG:ECs4391 KEGG:ns NR:ns ## COG: ECs4391 COG3247 # Protein_GI_number: 15833645 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 190 1 190 190 293 100.0 1e-79 MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFVSGDILSTVVGALLICS GIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGV IRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVSVTLVSTLVGIELIFSAASLF SFASLFVKQQ >gi|223713510|gb|ACDM01000088.1| GENE 8 9466 - 9798 511 110 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3953 NR:ns ## KEGG: EC55989_3953 # Name: hdeA # Def: acid-resistance protein # Organism: E.coli_55989 # Pathway: not_defined # 19 110 19 110 110 157 100.0 7e-38 MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM >gi|223713510|gb|ACDM01000088.1| GENE 9 9902 - 10240 323 112 aa, chain + ## HITS:1 COG:no KEGG:SSON_3577 NR:ns ## KEGG: SSON_3577 # Name: hdeB # Def: acid-resistance protein # Organism: S.sonnei # Pathway: not_defined # 1 112 1 112 112 216 100.0 1e-55 MGYKMNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWW MLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN >gi|223713510|gb|ACDM01000088.1| GENE 10 10304 - 10951 603 215 aa, chain + ## HITS:1 COG:ECs4388 KEGG:ns NR:ns ## COG: ECs4388 COG1285 # Protein_GI_number: 15833642 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1 215 1 215 215 381 100.0 1e-106 MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLD HVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIWVTAAIGMVIGSGMYELGI YGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLDWFKQQKIKTDLVSLQENED HEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS >gi|223713510|gb|ACDM01000088.1| GENE 11 10993 - 11523 370 176 aa, chain - ## HITS:1 COG:yhiF KEGG:ns NR:ns ## COG: yhiF COG2771 # Protein_GI_number: 16131379 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Escherichia coli K12 # 1 176 1 176 176 312 100.0 2e-85 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV >gi|223713510|gb|ACDM01000088.1| GENE 12 11679 - 12245 641 188 aa, chain - ## HITS:1 COG:ECs4377 KEGG:ns NR:ns ## COG: ECs4377 COG3065 # Protein_GI_number: 15833631 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Escherichia coli O157:H7 # 1 188 12 199 199 381 100.0 1e-106 MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVI NVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQG EQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPGWGAPYYTNAVS QVTPELVK >gi|223713510|gb|ACDM01000088.1| GENE 13 12493 - 13230 193 245 aa, chain - ## HITS:1 COG:no KEGG:ECB_03353 NR:ns ## KEGG: ECB_03353 # Name: yhiS # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 245 163 407 407 466 100.0 1e-130 MFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQN LSGFVLTLSRFYFEDLLNINFTDANLGDTIFLHKEHPTPKLYKDGQYLDKQIEGLFSTLL TINDNLLRAKAEIASTIIKFLEARITNLSYNDILKYQQEFQKQCYKQVKAFTTLSRYNKI QTWAEMSEYQFEVFQYETLNPKKMSHTPYLKRPLPNEKDINYGVEIEIPSGKRIRLSNHY QNIIP >gi|223713510|gb|ACDM01000088.1| GENE 14 14345 - 14770 578 141 aa, chain - ## HITS:1 COG:arsC KEGG:ns NR:ns ## COG: arsC COG1393 # Protein_GI_number: 16131375 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1 141 1 141 141 273 100.0 1e-73 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLR KNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEILPDAQ KGAFSKEDGEKVVDEAGKRLK >gi|223713510|gb|ACDM01000088.1| GENE 15 14783 - 16072 1550 429 aa, chain - ## HITS:1 COG:arsB KEGG:ns NR:ns ## COG: arsB COG1055 # Protein_GI_number: 16131374 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Escherichia coli K12 # 1 429 8 436 436 680 100.0 0 MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPGDIPVVWNIVWNATAAF IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLGAAVAALFANDGAALILTP IVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLGFREYASVMV PVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAIKDPATFKTGWVVLLLLLVGFFV LEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLRGAPWQIVIFSLGMYLVVYGLRNAG LTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSIMNNMPTVLVGALSIDGSTASGVIKEA MVYANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTISWGYYFRTGIIMTLPVLFVTLAA LALRLSFTL >gi|223713510|gb|ACDM01000088.1| GENE 16 16126 - 16479 246 117 aa, chain - ## HITS:1 COG:arsR KEGG:ns NR:ns ## COG: arsR COG0640 # Protein_GI_number: 16131373 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 117 1 117 117 225 100.0 2e-59 MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLALLRESGLL LDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIVRNLARQNCSGDSKNICS >gi|223713510|gb|ACDM01000088.1| GENE 17 17018 - 17191 98 57 aa, chain - ## HITS:1 COG:no KEGG:ECBD_0240 NR:ns ## KEGG: ECBD_0240 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 57 1 57 57 92 100.0 5e-18 MHPLTHPLPVTAHVSLLDKNSLTPARASVNGTTRTSDQDFESVYAHCQSENASELTG >gi|223713510|gb|ACDM01000088.1| GENE 18 17186 - 17302 83 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHSHSIAWRKRVIDKAIIVLGALIALLELIRFLLQLLN >gi|223713510|gb|ACDM01000088.1| GENE 19 17356 - 18708 502 450 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 444 4 442 458 197 31 6e-50 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIR EAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA KTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIAV ELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNADG SLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYA VGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAR EQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFA VALKMGATKKDFDNTVAIHPTAAEEFVTMR >gi|223713510|gb|ACDM01000088.1| GENE 20 18780 - 19622 920 280 aa, chain - ## HITS:1 COG:yhiR KEGG:ns NR:ns ## COG: yhiR COG2961 # Protein_GI_number: 16131371 # Func_class: R General function prediction only # Function: Protein involved in catabolism of external DNA # Organism: Escherichia coli K12 # 1 280 1 280 280 559 100.0 1e-159 MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGE YLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELH PSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGI AEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGM IVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVPE >gi|223713510|gb|ACDM01000088.1| GENE 21 19825 - 21867 2624 680 aa, chain + ## HITS:1 COG:prlC KEGG:ns NR:ns ## COG: prlC COG0339 # Protein_GI_number: 16131370 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Escherichia coli K12 # 1 680 1 680 680 1369 100.0 0 MTNPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVD DVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYA TLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKL VTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPSYLPVMTYCDNQALREEMYRAYS TRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFENYAFKSLATKMAENPQQVLDFLTD LAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPEN KAVNGLFEVVKRIYGITAKERKDVDVWHPDVRFFELYDENNELRGSFYLDLYARENKRGG AWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLT RIETAGVSGISGVPWDAVELPSQFMENWCWEPEALAFISGHYETGEPLPKELLDKMLAAK NYQAALFILRQLEFGLFDFRLHAEFRPDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFS HIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFK RFRGREPQLDAMLEHYGIKG >gi|223713510|gb|ACDM01000088.1| GENE 22 21875 - 22627 793 250 aa, chain + ## HITS:1 COG:ECs4369 KEGG:ns NR:ns ## COG: ECs4369 COG0500 # Protein_GI_number: 15833623 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 # 1 250 1 250 250 484 100.0 1e-137 MKICLIDETGTGDGALSVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFV GGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNP VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKS ALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGH RFDIYAGTPV >gi|223713510|gb|ACDM01000088.1| GENE 23 22676 - 24145 1649 489 aa, chain - ## HITS:1 COG:yhiP KEGG:ns NR:ns ## COG: yhiP COG3104 # Protein_GI_number: 16131368 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Escherichia coli K12 # 1 489 1 489 489 867 100.0 0 MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQLGFSQEQAFVTFGAFA ALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIALSLAPVIADRFGYSVTYNLCG AGLIIALLVYIACRGMVKDIGSEPDFRPMSFSKLLYVLLGSVVMIFVCAWLMHNVEVANL VLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNV HHEILGFSINPVSFQALNPFWVVLASPILAGIYTHLGNKGKDLSMPMKFTLGMFMCSLGF LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMLLMVPWLK RMIATPESH >gi|223713510|gb|ACDM01000088.1| GENE 24 24462 - 24896 641 144 aa, chain - ## HITS:1 COG:ECs4367 KEGG:ns NR:ns ## COG: ECs4367 COG0589 # Protein_GI_number: 15833621 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 144 1 144 144 271 100.0 3e-73 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQK RISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLM SSARQLINTVHVDMLIVPLRDEEE >gi|223713510|gb|ACDM01000088.1| GENE 25 25341 - 25622 230 93 aa, chain + ## HITS:1 COG:no KEGG:G2583_4220 NR:ns ## KEGG: G2583_4220 # Name: uspB # Def: universal stress protein B # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 93 19 111 111 184 100.0 1e-45 MARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDE FIRRCERVRRQFILTSALCGLVVVSLIALMIWH >gi|223713510|gb|ACDM01000088.1| GENE 26 25866 - 27365 1665 499 aa, chain - ## HITS:1 COG:ECs4365 KEGG:ns NR:ns ## COG: ECs4365 COG0306 # Protein_GI_number: 15833619 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Escherichia coli O157:H7 # 1 499 1 499 499 893 100.0 0 MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMRSQLAVVMAAVF NFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLLAAIIWNLGTWYFGLPASS SHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLIVSPIVGLVFAGGLIFLLRRY WSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSAIGVAFSHGANDGQKGIGLVMLV LIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQHPALLKQATGADQLVPAPEAGATQ PAEFHCHPSNTINALNRLKGMLTTDVESYDKLSLDQRSQMRRIMLCVSDTIDKVVKMPGV SADDQRLLKKLKSDMLSTIEYAPVWIIMAVALALGIGTMIGWRRVATTIGEKIGKKGMTY AQGMSAQMTAAVSIGLASYTGMPVSTTHVLSSSVAGTMVVDGGGLQRKTVTSILMAWVFT LPAAVLLSGGLYWLSLQFL >gi|223713510|gb|ACDM01000088.1| GENE 27 27597 - 28799 1035 400 aa, chain + ## HITS:1 COG:yhiN KEGG:ns NR:ns ## COG: yhiN COG2081 # Protein_GI_number: 16131364 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Escherichia coli K12 # 1 400 1 400 400 810 100.0 0 MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPG AYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEK GNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQF GLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAV LQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQ IPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVP GLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS >gi|223713510|gb|ACDM01000088.1| GENE 28 29114 - 30121 499 335 aa, chain - ## HITS:1 COG:no KEGG:G2583_4217 NR:ns ## KEGG: G2583_4217 # Name: yhiM # Def: inner membrane protein YhiM # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 335 49 383 383 583 100.0 1e-165 MGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTL FPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIP KNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLG LTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLA PGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQT DMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK >gi|223713510|gb|ACDM01000088.1| GENE 29 30549 - 32156 321 535 aa, chain + ## HITS:1 COG:no KEGG:ECB_03339 NR:ns ## KEGG: ECB_03339 # Name: yhiKL # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 535 1 535 535 1070 100.0 0 MKAIDNQIRNISSSHQDKHSDKVNSHQHHGKVDKTHRAKIVEFDKLDNDSQIDNDFGLHI IYFLQHGHWKVNDRSHQMEKVWFYNSEPSIDIQEYNRFADNTTDTFIFTIIPDNNHVLKL SSPITVTVECKGGYYFINSSGDKSDIIYKVDGLSIIARNFFTLLSGNFKPDWRWDVSKET FTKEKFDSYVKSVFSKIDFYKQCGVINPQNANTAYFGDTDGRVGAVLYALLVSGHIGIRE KGWSLLCELLKHEEMASSAYKHKNNKVLYDLLNTRDMILNELHQHVFLKDDAITPCIFLG DHTGDRFSTIFGDKYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGNYTARLANH KLSAGDTYNLIKTLDVCNYDSERQVLTSHHGIIRDEEKKCYCLGALQVPFNQMKNPTDPE ELANIFNKKHKEHMDDPLFHLIRSNTLKPTPVYANYFDNTTDFRPARERIFICGETLKGE DPSKYIRQKYGHHGPGVDHNQQFDNGIMGLNSLKEARDKNNKIIYSSGLSCFQPH >gi|223713510|gb|ACDM01000088.1| GENE 30 32418 - 34040 56 540 aa, chain + ## HITS:1 COG:no KEGG:JW3455 NR:ns ## KEGG: JW3455 # Name: yhiJ # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 540 1 540 540 1099 99.0 0 MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKI DDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRNNNYQFIVTINSKNYGCS LDNTDVNWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVSDIKFETMIKPQFA DRIYFSNCLPVDPTSTRPTYFGDTDGSVGAVLFALFATGHLGIMAEGENFLSQLLNIEDE VLNVLLRENFNEQLNTNVNTIISILNRRDIILESLQPYLVINKDAVTPCTFLGDQTGDRF SNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGNYMQNFTRMKPLDEDTYSGIKDYP VCFYDPKYKIMANHHGITFDDQRKRYIIGPITVSIDEMTNALDPVELAAIINKKHHAIIN GKKFKTSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHNGNGGRERIGETG TVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRNGLMPLIRRRTMLQL >gi|223713510|gb|ACDM01000088.1| GENE 31 34406 - 35473 1125 355 aa, chain + ## HITS:1 COG:yhiI KEGG:ns NR:ns ## COG: yhiI COG0845 # Protein_GI_number: 16131359 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 355 1 355 355 566 99.0 1e-161 MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS LVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ >gi|223713510|gb|ACDM01000088.1| GENE 32 35470 - 38205 2736 911 aa, chain + ## HITS:1 COG:yhiH_1 KEGG:ns NR:ns ## COG: yhiH_1 COG1131 # Protein_GI_number: 16131358 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Escherichia coli K12 # 18 549 1 532 532 1085 99.0 0 MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISG ARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHD KAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDP LSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAEELRQQTQ SATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIAIEARDLTMRFGSFVAVDHVNFRIP RGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRRVGYMSQAFSL YNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAV AVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRISLM HAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSL RRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQ AWTLNLSGSRYFIEQPPLTSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWID GAMPSRAETVKGYVQAMHQSWLQDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPA VIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLC GLSVFVFGVPHKGSFLTLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQ FSGMIDPVASLEGPGRWIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMG LSILLLKKQEG >gi|223713510|gb|ACDM01000088.1| GENE 33 38205 - 39329 1226 374 aa, chain + ## HITS:1 COG:yhhJ KEGG:ns NR:ns ## COG: yhhJ COG0842 # Protein_GI_number: 16131357 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli K12 # 1 374 2 375 375 667 100.0 0 MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTPGSLNLAPIAIADMDQS QLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIPPNFQRDVLAGRQPDIQVN VDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVSLETRMRFNPNLDPAWFGGVM AIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSL VLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQM LSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAILYRGAGFEIVWPQFLTLMAIGGAFFT IALLRFRKTIGTMA Prediction of potential genes in microbial genomes Time: Mon May 16 19:29:41 2011 Seq name: gi|223713509|gb|ACDM01000089.1| Escherichia sp. 4_1_40B cont1.89, whole genome shotgun sequence Length of sequence - 1607 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 134 - 379 116 ## COG1413 FOG: HEAT repeat 2 2 Op 1 . - CDS 484 - 750 182 ## JW3449 hypothetical protein 3 2 Op 2 . - CDS 839 - 1606 17 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713509|gb|ACDM01000089.1| GENE 1 134 - 379 116 81 aa, chain - ## HITS:1 COG:ZyibA KEGG:ns NR:ns ## COG: ZyibA COG1413 # Protein_GI_number: 15804135 # Func_class: C Energy production and conversion # Function: FOG: HEAT repeat # Organism: Escherichia coli O157:H7 EDL933 # 1 81 1 81 280 149 96.0 1e-36 MSNTYQKRKASKEYGLYNKCKKLNDDELFRLLDDRNSLKRISSARVLQLRGGQDAVRLAI EFCTDKNYIRRDIGAFILGQI >gi|223713509|gb|ACDM01000089.1| GENE 2 484 - 750 182 88 aa, chain - ## HITS:1 COG:no KEGG:JW3449 NR:ns ## KEGG: JW3449 # Name: yhhH # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 88 40 127 127 172 100.0 4e-42 MRKYESEGKYTVRNLVKNKAIALELAEIYVKNRYGQDAAEEEKPYEITELTTSWVVEGTI HSDQIAGGVFIIEIGKNDGRILNFGHGK >gi|223713509|gb|ACDM01000089.1| GENE 3 839 - 1606 17 255 aa, chain - ## HITS:1 COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 255 1157 1411 1411 541 99.0 1e-154 LISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGR YITQDPIGLKGGWNLYGYQLNPISDIDPLGLSMWEDAKSGACTNGLCGTLSAMIGPDKFD SIDSTAYGALNKINNQSICEDKEFAGLICKDNSGRYFSTAPNRGERKGSYPFNSPCPNGT EKVSAYHTHGADSHGEYWDEIFSGKDEKIVKSKDNNIKSFYLGTPSGNFKAIDNHGKEIT NRKGLPNVCRVHGNM Prediction of potential genes in microbial genomes Time: Mon May 16 19:30:32 2011 Seq name: gi|223713508|gb|ACDM01000090.1| Escherichia sp. 4_1_40B cont1.90, whole genome shotgun sequence Length of sequence - 147297 bp Number of predicted genes - 142, with homology - 142 Number of transcription units - 68, operones - 30 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.720 - CDS 284 - 685 451 ## COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain 2 1 Op 2 17/0.000 - CDS 691 - 1497 404 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 3 1 Op 3 44/0.000 - CDS 1494 - 2258 355 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 4 1 Op 4 49/0.000 - CDS 2258 - 3091 1073 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 5 1 Op 5 38/0.000 - CDS 3088 - 4032 254 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 6 1 Op 6 . - CDS 4032 - 5606 1826 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 5636 - 5695 4.7 7 2 Tu 1 . + CDS 5631 - 5807 61 ## UTI89_C3992 hypothetical protein + Term 5897 - 5933 2.0 - Term 5631 - 5671 3.0 8 3 Op 1 1/0.880 - CDS 5717 - 6304 515 ## COG2091 Phosphopantetheinyl transferase 9 3 Op 2 . - CDS 6359 - 7408 1009 ## COG0628 Predicted permease - Prom 7429 - 7488 2.9 + Prom 7455 - 7514 2.2 10 4 Tu 1 . + CDS 7540 - 8757 1228 ## COG0477 Permeases of the major facilitator superfamily + Term 8804 - 8848 5.1 - Term 8700 - 8747 7.6 11 5 Op 1 . - CDS 8761 - 9318 756 ## ECO103_4192 hypothetical protein 12 5 Op 2 . - CDS 9391 - 10056 667 ## COG1738 Uncharacterized conserved protein - Prom 10118 - 10177 4.4 + Prom 10194 - 10253 6.1 13 6 Tu 1 . + CDS 10277 - 10522 355 ## COG0425 Predicted redox protein, regulator of disulfide bond formation + Term 10587 - 10636 7.2 14 7 Op 1 5/0.360 - CDS 10624 - 12822 2453 ## COG2217 Cation transport ATPase - Term 12854 - 12885 3.4 15 7 Op 2 . - CDS 12896 - 13522 725 ## COG3714 Predicted membrane protein + Prom 13580 - 13639 3.4 16 8 Tu 1 . + CDS 13663 - 14022 373 ## JW3432 conserved hypothetical protein + Term 14103 - 14135 -1.0 17 9 Op 1 6/0.160 - CDS 14025 - 14294 351 ## COG3776 Predicted membrane protein 18 9 Op 2 . - CDS 14284 - 14880 190 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 - Prom 15010 - 15069 3.2 + Prom 14899 - 14958 5.1 19 10 Op 1 9/0.000 + CDS 15030 - 16523 747 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 20 10 Op 2 28/0.000 + CDS 16526 - 17194 348 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 21 10 Op 3 7/0.040 + CDS 17187 - 18245 1044 ## COG2177 Cell division protein + Term 18289 - 18328 3.7 + Prom 18334 - 18393 6.2 22 11 Tu 1 . + CDS 18490 - 19344 1067 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 19361 - 19402 6.3 + Prom 19453 - 19512 5.1 23 12 Tu 1 . + CDS 19615 - 20718 1404 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - Term 20714 - 20745 2.1 24 13 Tu 1 . - CDS 20906 - 21289 317 ## JW3424 conserved hypothetical protein - Prom 21328 - 21387 5.4 + Prom 21634 - 21693 2.1 25 14 Op 1 20/0.000 + CDS 21713 - 22822 1278 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component 26 14 Op 2 24/0.000 + CDS 22870 - 23796 1358 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 27 14 Op 3 19/0.000 + CDS 23793 - 25070 1519 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 28 14 Op 4 18/0.000 + CDS 25067 - 25834 258 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 29 14 Op 5 . + CDS 25836 - 26549 267 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 26623 - 26665 -0.8 + Prom 26813 - 26872 7.3 30 15 Op 1 35/0.000 + CDS 26948 - 28264 1719 ## COG1653 ABC-type sugar transport system, periplasmic component + Prom 28266 - 28325 2.6 31 15 Op 2 38/0.000 + CDS 28362 - 29249 1082 ## COG1175 ABC-type sugar transport systems, permease components 32 15 Op 3 21/0.000 + CDS 29246 - 30091 940 ## COG0395 ABC-type sugar transport system, permease component 33 15 Op 4 4/0.600 + CDS 30093 - 31163 1486 ## COG3839 ABC-type sugar transport systems, ATPase components 34 15 Op 5 . + CDS 31160 - 31903 754 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 31925 - 31968 8.1 - Term 31799 - 31842 8.7 35 16 Tu 1 . - CDS 31890 - 32330 312 ## S4297 hypothetical protein - Prom 32353 - 32412 3.7 + Prom 32304 - 32363 2.2 36 17 Tu 1 . + CDS 32450 - 34192 1782 ## COG0405 Gamma-glutamyltransferase + Term 34201 - 34234 5.4 37 18 Tu 1 . - CDS 34230 - 34514 263 ## B21_03248 hypothetical protein - Prom 34542 - 34601 3.4 38 19 Op 1 . - CDS 34714 - 34869 60 ## EC55989_3853 hypothetical protein - Prom 34892 - 34951 1.7 39 19 Op 2 . - CDS 34964 - 35419 218 ## ECIAI1_3588 hypothetical protein 40 19 Op 3 1/0.880 - CDS 35455 - 36633 263 ## COG3157 Hemolysin-coregulated protein (uncharacterized) - Prom 36708 - 36767 16.1 - Term 36804 - 36840 -1.0 41 20 Tu 1 . - CDS 36870 - 37358 347 ## PROTEIN SUPPORTED gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase - Prom 37388 - 37447 3.2 42 21 Tu 1 . - CDS 37592 - 37789 162 ## ECS88_3838 hypothetical protein + Prom 37421 - 37480 4.4 43 22 Tu 1 5/0.360 + CDS 37691 - 38728 1091 ## COG0673 Predicted dehydrogenases and related proteins + Term 38735 - 38787 3.6 + Prom 38741 - 38800 4.5 44 23 Tu 1 4/0.600 + CDS 38851 - 39546 896 ## COG1741 Pirin-related protein + Term 39567 - 39596 0.4 + Prom 39639 - 39698 4.4 45 24 Tu 1 . + CDS 39770 - 40765 964 ## COG1609 Transcriptional regulators + Prom 40794 - 40853 2.0 46 25 Op 1 4/0.600 + CDS 40943 - 41431 484 ## COG3265 Gluconate kinase + Term 41460 - 41497 3.9 47 25 Op 2 . + CDS 41498 - 42775 1571 ## COG2610 H+/gluconate symporter and related permeases + Term 42785 - 42820 5.2 48 26 Tu 1 . - CDS 42832 - 43425 624 ## COG2095 Multiple antibiotic transporter - Prom 43588 - 43647 3.4 + Prom 43393 - 43452 3.7 49 27 Tu 1 . + CDS 43618 - 44721 1146 ## COG0136 Aspartate-semialdehyde dehydrogenase + Term 44740 - 44769 1.1 + Prom 44780 - 44839 3.1 50 28 Op 1 9/0.000 + CDS 44994 - 47180 2638 ## COG0296 1,4-alpha-glucan branching enzyme 51 28 Op 2 7/0.040 + CDS 47177 - 49150 1409 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 52 28 Op 3 17/0.000 + CDS 49168 - 50463 1240 ## COG0448 ADP-glucose pyrophosphorylase 53 28 Op 4 10/0.000 + CDS 50463 - 51896 1336 ## COG0297 Glycogen synthase 54 28 Op 5 2/0.800 + CDS 51915 - 54362 2886 ## COG0058 Glucan phosphorylase + Term 54378 - 54413 4.9 + Prom 54409 - 54468 2.4 55 29 Tu 1 . + CDS 54491 - 54772 164 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 54810 - 54849 1.2 - Term 54843 - 54880 -0.9 56 30 Tu 1 . - CDS 54978 - 56483 1714 ## COG0578 Glycerol-3-phosphate dehydrogenase - Prom 56526 - 56585 5.7 + Prom 56512 - 56571 4.6 57 31 Op 1 4/0.600 + CDS 56673 - 56999 512 ## COG0607 Rhodanese-related sulfurtransferase 58 31 Op 2 6/0.160 + CDS 57044 - 57874 837 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 59 31 Op 3 . + CDS 57891 - 58649 831 ## COG1349 Transcriptional regulators of sugar metabolism + Term 58814 - 58848 -1.0 60 32 Tu 1 . - CDS 58631 - 60229 1274 ## COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain - Prom 60326 - 60385 4.4 + Prom 60296 - 60355 5.2 61 33 Op 1 3/0.720 + CDS 60418 - 61644 1317 ## COG1690 Uncharacterized conserved protein 62 33 Op 2 . + CDS 61648 - 62664 788 ## COG0430 RNA 3'-terminal phosphate cyclase + Term 62820 - 62858 -0.6 - Term 62661 - 62704 0.5 63 34 Tu 1 . - CDS 62707 - 65412 2527 ## COG2909 ATP-dependent transcriptional regulator - Prom 65437 - 65496 6.1 + Prom 65845 - 65904 2.7 64 35 Op 1 7/0.040 + CDS 66024 - 68417 2783 ## COG0058 Glucan phosphorylase 65 35 Op 2 . + CDS 68427 - 70511 2030 ## COG1640 4-alpha-glucanotransferase - Term 70390 - 70433 1.6 66 36 Tu 1 . - CDS 70622 - 71938 1806 ## COG2610 H+/gluconate symporter and related permeases - Prom 71990 - 72049 4.0 - Term 72198 - 72233 0.7 67 37 Op 1 5/0.360 - CDS 72298 - 72873 708 ## COG0694 Thioredoxin-like proteins and domains 68 37 Op 2 . - CDS 72932 - 73615 241 ## COG1040 Predicted amidophosphoribosyltransferases + Prom 73563 - 73622 2.9 69 38 Tu 1 . + CDS 73653 - 74423 559 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 70 39 Tu 1 . - CDS 74452 - 75330 740 ## COG5464 Uncharacterized conserved protein - Prom 75447 - 75506 2.4 - Term 75469 - 75506 6.1 71 40 Op 1 . - CDS 75533 - 75769 231 ## SDY_3666 hypothetical protein 72 40 Op 2 22/0.000 - CDS 75769 - 78090 2856 ## COG0370 Fe2+ transport system protein B 73 40 Op 3 4/0.600 - CDS 78107 - 78334 237 ## COG1918 Fe2+ transport system protein A - Term 78658 - 78692 6.0 74 41 Op 1 1/0.880 - CDS 78791 - 81112 1644 ## PROTEIN SUPPORTED gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein - Prom 81145 - 81204 2.0 75 41 Op 2 . - CDS 81209 - 81685 679 ## COG0782 Transcription elongation factor - Prom 81767 - 81826 4.9 + Prom 81749 - 81808 11.2 76 42 Op 1 40/0.000 + CDS 81913 - 82632 897 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 77 42 Op 2 . + CDS 82629 - 83981 1336 ## COG0642 Signal transduction histidine kinase + Term 83983 - 84027 7.1 - Term 83975 - 84008 4.4 78 43 Tu 1 . - CDS 84057 - 85679 2004 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) - Prom 85835 - 85894 4.0 + Prom 85777 - 85836 5.7 79 44 Tu 1 . + CDS 86058 - 87782 1446 ## B21_03206 hypothetical protein - Term 87801 - 87836 7.4 80 45 Op 1 3/0.720 - CDS 87845 - 88723 1086 ## COG1281 Disulfide bond chaperones of the HSP33 family 81 45 Op 2 4/0.600 - CDS 88748 - 89149 448 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 82 45 Op 3 . - CDS 89160 - 89828 938 ## COG1011 Predicted hydrolase (HAD superfamily) - Term 89842 - 89888 10.1 83 45 Op 4 . - CDS 89893 - 92028 1763 ## JW3361 predicted inner membrane protein - Prom 92247 - 92306 5.3 + Prom 92206 - 92265 7.0 84 46 Tu 1 . + CDS 92348 - 92908 659 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 92922 - 92958 1.9 - Term 93034 - 93073 3.0 85 47 Tu 1 . - CDS 93074 - 95626 2635 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein - Prom 95650 - 95709 3.4 + Prom 95614 - 95673 2.0 86 48 Op 1 . + CDS 95746 - 96525 700 ## JW5693 predicted pilus assembly protein 87 48 Op 2 . + CDS 96525 - 97064 288 ## COG3166 Tfp pilus assembly protein PilN 88 48 Op 3 . + CDS 97048 - 97488 191 ## ECO103_4111 hypothetical protein 89 48 Op 4 . + CDS 97478 - 97882 276 ## SDY_3687 hypothetical protein 90 48 Op 5 8/0.000 + CDS 97794 - 99032 1085 ## COG4796 Type II secretory pathway, component HofQ + Term 99112 - 99145 0.6 + Prom 99271 - 99330 3.9 91 48 Op 6 20/0.000 + CDS 99433 - 99954 542 ## COG0703 Shikimate kinase 92 48 Op 7 7/0.040 + CDS 100011 - 101099 920 ## COG0337 3-dehydroquinate synthetase + Term 101115 - 101145 2.7 93 49 Tu 1 6/0.160 + CDS 101191 - 102477 1069 ## COG3266 Uncharacterized protein conserved in bacteria + Term 102518 - 102556 -0.9 94 50 Op 1 6/0.160 + CDS 102584 - 103420 633 ## COG0338 Site-specific DNA methylase 95 50 Op 2 9/0.000 + CDS 103438 - 104115 800 ## COG0036 Pentose-5-phosphate-3-epimerase 96 50 Op 3 6/0.160 + CDS 104108 - 104866 945 ## COG0546 Predicted phosphatases 97 50 Op 4 . + CDS 104859 - 105863 1175 ## COG0180 Tryptophanyl-tRNA synthetase + Term 105962 - 105998 2.4 + Prom 105921 - 105980 9.1 98 51 Op 1 . + CDS 106153 - 107058 786 ## B21_03187 hypothetical protein 99 51 Op 2 . + CDS 107075 - 107437 381 ## UTI89_C3880 hypothetical protein 100 51 Op 3 2/0.800 + CDS 107516 - 108679 1176 ## COG3457 Predicted amino acid racemase 101 51 Op 4 1/0.880 + CDS 108679 - 109905 1247 ## COG1015 Phosphopentomutase 102 51 Op 5 . + CDS 109902 - 110780 1024 ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold 103 51 Op 6 . + CDS 110791 - 111144 511 ## UTI89_C3876 hypothetical protein 104 51 Op 7 . + CDS 111156 - 112460 1412 ## EC55989_3782 conserved hypothetical protein; putative inner membrane protein 105 51 Op 8 . + CDS 112472 - 113557 976 ## JW3339 conserved hypothetical protein + Term 113660 - 113702 13.2 - Term 113643 - 113696 11.2 106 52 Tu 1 1/0.880 - CDS 113709 - 114440 690 ## COG2188 Transcriptional regulators - Prom 114466 - 114525 3.6 - Term 114492 - 114533 9.5 107 53 Op 1 5/0.360 - CDS 114540 - 115325 824 ## COG0524 Sugar kinases, ribokinase family 108 53 Op 2 2/0.800 - CDS 115322 - 116152 968 ## COG1082 Sugar phosphate isomerases/epimerases 109 53 Op 3 2/0.800 - CDS 116202 - 117224 1203 ## COG2222 Predicted phosphosugar isomerases 110 53 Op 4 . - CDS 117245 - 118582 1520 ## COG0531 Amino acid transporters - Prom 118655 - 118714 4.8 - Term 118800 - 118835 5.5 111 54 Tu 1 . - CDS 118877 - 119044 243 ## LF82_3285 uncharacterized protein YhfL - Prom 119078 - 119137 7.6 - Term 119252 - 119281 2.1 112 55 Op 1 3/0.720 - CDS 119291 - 120664 1467 ## COG0007 Uroporphyrinogen-III methylase 113 55 Op 2 3/0.720 - CDS 120683 - 121489 956 ## COG2116 Formate/nitrite family of transporters - Prom 121512 - 121571 10.8 - Term 121575 - 121605 3.4 114 56 Op 1 14/0.000 - CDS 121615 - 121941 478 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 115 56 Op 2 4/0.600 - CDS 121938 - 124481 3090 ## COG1251 NAD(P)H-nitrite reductase - Prom 124574 - 124633 3.9 - Term 124696 - 124734 7.0 116 57 Tu 1 . - CDS 124743 - 125924 1309 ## COG0477 Permeases of the major facilitator superfamily - Prom 126031 - 126090 7.3 + Prom 126057 - 126116 5.8 117 58 Tu 1 . + CDS 126195 - 126767 573 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 126777 - 126810 6.8 + Prom 126786 - 126845 2.9 118 59 Op 1 . + CDS 126872 - 127039 129 ## SDY_3524 hypothetical protein 119 59 Op 2 4/0.600 + CDS 127029 - 127631 735 ## COG2184 Protein involved in cell division 120 59 Op 3 5/0.360 + CDS 127663 - 128226 484 ## COG0512 Anthranilate/para-aminobenzoate synthases component II + Prom 128228 - 128287 7.0 121 59 Op 4 . + CDS 128312 - 129532 1328 ## COG4992 Ornithine/acetylornithine aminotransferase + Term 129557 - 129598 3.2 122 60 Op 1 4/0.600 - CDS 129599 - 131689 1679 ## COG1289 Predicted membrane protein - Term 131691 - 131728 8.2 123 60 Op 2 . - CDS 131740 - 132372 878 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 132522 - 132581 1.8 124 61 Tu 1 . + CDS 132674 - 133078 444 ## COG1765 Predicted redox protein, regulator of disulfide bond formation + Term 133089 - 133144 2.7 - Term 133026 - 133057 -0.8 125 62 Tu 1 6/0.160 - CDS 133133 - 134002 870 ## COG3954 Phosphoribulokinase 126 63 Op 1 5/0.360 - CDS 134056 - 134274 336 ## COG3089 Uncharacterized protein conserved in bacteria 127 63 Op 2 3/0.720 - CDS 134268 - 135230 930 ## COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold 128 63 Op 3 . - CDS 135290 - 137203 2447 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 137307 - 137366 3.4 + Prom 137193 - 137252 4.7 129 64 Op 1 7/0.040 + CDS 137334 - 137885 455 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 130 64 Op 2 3/0.720 + CDS 137885 - 139690 1056 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 131 64 Op 3 4/0.600 + CDS 139700 - 139900 225 ## COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 139938 - 139979 0.7 + Prom 139907 - 139966 3.9 132 65 Tu 1 . + CDS 139995 - 140585 732 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 + Term 140607 - 140635 2.1 - Term 140582 - 140630 10.2 133 66 Tu 1 . - CDS 140634 - 140852 315 ## COG2900 Uncharacterized protein conserved in bacteria - Prom 140960 - 141019 3.3 + Prom 140922 - 140981 3.4 134 67 Tu 1 . + CDS 141073 - 141885 1002 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Term 141893 - 141932 9.8 + Prom 141891 - 141950 5.5 135 68 Op 1 6/0.160 + CDS 142052 - 142774 772 ## COG2964 Uncharacterized protein conserved in bacteria 136 68 Op 2 13/0.000 + CDS 142774 - 143160 389 ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction 137 68 Op 3 10/0.000 + CDS 143160 - 143519 215 ## COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur 138 68 Op 4 7/0.040 + CDS 143527 - 143814 281 ## COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur 139 68 Op 5 56/0.000 + CDS 143880 - 144314 744 ## PROTEIN SUPPORTED gi|226956878|ref|YP_002807671.1| 30S ribosomal subunit protein S12 + Prom 144323 - 144382 2.1 140 68 Op 6 51/0.000 + CDS 144411 - 144881 777 ## PROTEIN SUPPORTED gi|15803854|ref|NP_289888.1| 30S ribosomal protein S7 + Term 144907 - 144942 3.1 + Prom 144895 - 144954 1.6 141 68 Op 7 30/0.000 + CDS 144978 - 147092 2340 ## COG0480 Translation elongation factors (GTPases) 142 68 Op 8 . + CDS 147163 - 147297 176 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|223713508|gb|ACDM01000090.1| GENE 1 284 - 685 451 133 aa, chain - ## HITS:1 COG:ECs4348 KEGG:ns NR:ns ## COG: ECs4348 COG0864 # Protein_GI_number: 15833602 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain # Organism: Escherichia coli O157:H7 # 1 133 1 133 133 205 100.0 2e-53 MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVY EHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRG VRHGHLQCLPKED >gi|223713508|gb|ACDM01000090.1| GENE 2 691 - 1497 404 268 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 27 232 294 500 563 160 41 5e-74 MTLLNISGLSHHYAHGGFNGKHQHQAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVG LESPAQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREILREPMRHLL SLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQVVGEKL TFSSDAGRVLQNAVLPAFPVRRRTTEKV >gi|223713508|gb|ACDM01000090.1| GENE 3 1494 - 2258 355 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 5 240 9 258 563 141 34 5e-74 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQT AGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA AIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARIL DLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL VSAHLALYGMELAS >gi|223713508|gb|ACDM01000090.1| GENE 4 2258 - 3091 1073 277 aa, chain - ## HITS:1 COG:ECs4345 KEGG:ns NR:ns ## COG: ECs4345 COG1173 # Protein_GI_number: 15833599 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 277 1 277 277 461 100.0 1e-130 MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLG RDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTS ILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVF VDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH >gi|223713508|gb|ACDM01000090.1| GENE 5 3088 - 4032 254 314 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 68 304 43 310 320 102 26 1e-20 MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPA VSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGM HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNA ALDPRIRRHEGAHA >gi|223713508|gb|ACDM01000090.1| GENE 6 4032 - 5606 1826 524 aa, chain - ## HITS:1 COG:nikA KEGG:ns NR:ns ## COG: nikA COG0747 # Protein_GI_number: 16131348 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 524 1 524 524 1045 100.0 0 MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLV KYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRAVLDNRQRH AWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKA PIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLY GNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSL IDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQ PLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTW GAPYDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRL HDEAVYLPISYISMMVVSKPELGNIPYAPIATEIPFEQIKPVKP >gi|223713508|gb|ACDM01000090.1| GENE 7 5631 - 5807 61 58 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C3992 NR:ns ## KEGG: UTI89_C3992 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 58 1 58 58 102 100.0 3e-21 MAEISMTILSIRHTDYLFWINRWAVGWADQLTESIHCTLSAVSVKGVGVQIARLKFSS >gi|223713508|gb|ACDM01000090.1| GENE 8 5717 - 6304 515 195 aa, chain - ## HITS:1 COG:yhhU KEGG:ns NR:ns ## COG: yhhU COG2091 # Protein_GI_number: 16131347 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Escherichia coli K12 # 1 195 1 195 195 387 100.0 1e-108 MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHTLSPLPEIIYGEQGKPA FAPEMPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWRWLANAVFSLGEHAEMDAV HPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSSLSVSHCQLENLSLAICTPTP FTLTADSVQWIDSVN >gi|223713508|gb|ACDM01000090.1| GENE 9 6359 - 7408 1009 349 aa, chain - ## HITS:1 COG:yhhT KEGG:ns NR:ns ## COG: yhhT COG0628 # Protein_GI_number: 16131346 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 1 349 28 376 376 581 100.0 1e-166 METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQ RPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMS PERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQ IHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIG AVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLL IWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKLAILLGPGRPKSRLPG >gi|223713508|gb|ACDM01000090.1| GENE 10 7540 - 8757 1228 405 aa, chain + ## HITS:1 COG:yhhS KEGG:ns NR:ns ## COG: yhhS COG0477 # Protein_GI_number: 16131345 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 405 15 419 419 673 100.0 0 MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYVHDVMGFSAFWAGLVIS LQYFATLLSRPHAGRYADSLGPKKIVVFGLCGCFLSGLGYLTAGLTASLPVISLLLLCLG RVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQ ALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLGRVWLYGMALALASAGFGVIATF ITLFYDAKGWDGAAFALTLFSCAFVGTRLLFPNGINRIGGLNVAMICFSVEIIGLLLVGV ATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGVTGPLA GLVMSWAGVPVIYLAAAGLVAIALLLTWRLKKRPPEHVPEAASSS >gi|223713508|gb|ACDM01000090.1| GENE 11 8761 - 9318 756 185 aa, chain - ## HITS:1 COG:no KEGG:ECO103_4192 NR:ns ## KEGG: ECO103_4192 # Name: dcrB # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 185 15 199 199 324 100.0 1e-87 MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTD QSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNK AIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIIN TLVIQ >gi|223713508|gb|ACDM01000090.1| GENE 12 9391 - 10056 667 221 aa, chain - ## HITS:1 COG:yhhQ KEGG:ns NR:ns ## COG: yhhQ COG1738 # Protein_GI_number: 16131343 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 221 1 221 221 374 100.0 1e-104 MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTV RIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYA LGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIAL VDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINALQAS >gi|223713508|gb|ACDM01000090.1| GENE 13 10277 - 10522 355 81 aa, chain + ## HITS:1 COG:ECs4319 KEGG:ns NR:ns ## COG: ECs4319 COG0425 # Protein_GI_number: 15833573 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 81 1 81 81 159 100.0 1e-39 MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFME HELVAKETDGLPYRYLIRKGG >gi|223713508|gb|ACDM01000090.1| GENE 14 10624 - 12822 2453 732 aa, chain - ## HITS:1 COG:zntA KEGG:ns NR:ns ## COG: zntA COG2217 # Protein_GI_number: 16131341 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Escherichia coli K12 # 1 732 1 732 732 1262 99.0 0 MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSTPTLSENVSGTRYSWKVSGMDCA ACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQAAEEP QASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATTLVGLYPIARQALRLIKSGSY FAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGWAASRARQGVSALMALKPETAT RLRKGEREEVAINSLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGD KVPAGATSVDRLVTLEVLSEPGASAIDRILKLIEEAEERRAPIERFIDRFSRIYTPAIMA VALLVTLVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKG GAALEQLGRVTQVAFDKTGTLTVGKPRVTAIHPATGISESELLTLAAAVEQGATHPLAQA IVREAQVAELAIPTAESQRALVGSGIEAQVNGERVLICAAGKHPADAFTGLINELESAGQ TVVLVVRNDDVLGVIALQDTLRADAATAISELNALGVKGVILTGDNPRAAAAIAGELGLE FKAGLLPEDKVKAVTGLNQHAPLAMVGDGINDAPAMKAAAIGIAMGSGTDVALETADAAL THNHLRGLVQMIELARATHANIRQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVL VTANALRLLRRR >gi|223713508|gb|ACDM01000090.1| GENE 15 12896 - 13522 725 208 aa, chain - ## HITS:1 COG:STM3575 KEGG:ns NR:ns ## COG: STM3575 COG3714 # Protein_GI_number: 16766861 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 208 1 208 208 302 91.0 3e-82 MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQAPMFDAISYLVLAGLC ASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSFFWPLPLVLLVLGALLLAI IWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALSAFVGASLLFISNFVWLGSHY RRRFRADNAIAAACYFAGHFLIVRSLYL >gi|223713508|gb|ACDM01000090.1| GENE 16 13663 - 14022 373 119 aa, chain + ## HITS:1 COG:no KEGG:JW3432 NR:ns ## KEGG: JW3432 # Name: yhhM # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 119 1 119 119 218 100.0 5e-56 MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQ QEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ >gi|223713508|gb|ACDM01000090.1| GENE 17 14025 - 14294 351 89 aa, chain - ## HITS:1 COG:yhhL KEGG:ns NR:ns ## COG: yhhL COG3776 # Protein_GI_number: 16131338 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 89 1 89 89 149 100.0 1e-36 MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMHGMQLALLKSTLPKDGP QMTTAEKVRIFLFGVFELLAWQKKFKVKK >gi|223713508|gb|ACDM01000090.1| GENE 18 14284 - 14880 190 198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 12 194 13 199 199 77 27 3e-13 MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCF AGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP HNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAG QVAYRLYQREAQGESDAD >gi|223713508|gb|ACDM01000090.1| GENE 19 15030 - 16523 747 497 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 198 494 21 321 336 292 48 7e-78 MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHT EAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNA EAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPV EEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADV GVETTRKIITNLTEGASRKQLRDAEALYGQLKEEMGEILAKVDEPLNVEGKAPFVILMVG VNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID ASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDL RPFKADDFIEALFARED >gi|223713508|gb|ACDM01000090.1| GENE 20 16526 - 17194 348 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 216 4 220 223 138 36 1e-31 MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF EEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGGVGHE >gi|223713508|gb|ACDM01000090.1| GENE 21 17187 - 18245 1044 352 aa, chain + ## HITS:1 COG:ftsX KEGG:ns NR:ns ## COG: ftsX COG2177 # Protein_GI_number: 16131334 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli K12 # 1 352 1 352 352 687 100.0 0 MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKPVNRKTNVFNEQVRYAF HGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAATQYYPSPQITVYLQKTLD DDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGGALDMLEENPLPAVAVVIPKL DFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALTGLVGRVSAMIGVLMVAAVFLVI GNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGGALLGFSGALLSLILSEILVLRLSS AVAEVAQVFGTKFDINGLSFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPE >gi|223713508|gb|ACDM01000090.1| GENE 22 18490 - 19344 1067 284 aa, chain + ## HITS:1 COG:ECs4310 KEGG:ns NR:ns ## COG: ECs4310 COG0568 # Protein_GI_number: 15833564 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Escherichia coli O157:H7 # 1 284 1 284 284 514 100.0 1e-146 MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRF VVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDM TFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDII RARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA >gi|223713508|gb|ACDM01000090.1| GENE 23 19615 - 20718 1404 367 aa, chain + ## HITS:1 COG:ECs4309 KEGG:ns NR:ns ## COG: ECs4309 COG0683 # Protein_GI_number: 15833563 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli O157:H7 # 1 367 20 386 386 706 100.0 0 MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKG GIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI TPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARA VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAG LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFV WTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHAN GTATDAK >gi|223713508|gb|ACDM01000090.1| GENE 24 20906 - 21289 317 127 aa, chain - ## HITS:1 COG:no KEGG:JW3424 NR:ns ## KEGG: JW3424 # Name: yhhK # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 127 1 127 127 253 100.0 1e-66 MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTE GALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQ QGGWEKC >gi|223713508|gb|ACDM01000090.1| GENE 25 21713 - 22822 1278 369 aa, chain + ## HITS:1 COG:livK KEGG:ns NR:ns ## COG: livK COG0683 # Protein_GI_number: 16131330 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli K12 # 1 369 1 369 369 707 100.0 0 MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH ADGSSTAAK >gi|223713508|gb|ACDM01000090.1| GENE 26 22870 - 23796 1358 308 aa, chain + ## HITS:1 COG:ECs4304 KEGG:ns NR:ns ## COG: ECs4304 COG0559 # Protein_GI_number: 15833558 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Escherichia coli O157:H7 # 1 308 1 308 308 491 100.0 1e-138 MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAA LMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQN YVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRM GRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGM KAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGIL GRPEVEKV >gi|223713508|gb|ACDM01000090.1| GENE 27 23793 - 25070 1519 425 aa, chain + ## HITS:1 COG:livM KEGG:ns NR:ns ## COG: livM COG4177 # Protein_GI_number: 16131328 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 425 1 425 425 717 99.0 0 MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQL LRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMI YIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGF LLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAR EGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIA CRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVFGGMG SQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAA KGEQA >gi|223713508|gb|ACDM01000090.1| GENE 28 25067 - 25834 258 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 245 1 230 245 103 25 3e-21 MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG TILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT PSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEP AAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ IRNNPDVIRAYLGEA >gi|223713508|gb|ACDM01000090.1| GENE 29 25836 - 26549 267 237 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 216 1 218 245 107 29 3e-22 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG RIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTI EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG >gi|223713508|gb|ACDM01000090.1| GENE 30 26948 - 28264 1719 438 aa, chain + ## HITS:1 COG:ECs4299 KEGG:ns NR:ns ## COG: ECs4299 COG1653 # Protein_GI_number: 15833553 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 438 1 438 438 845 100.0 0 MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPT YKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQF VPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLK ASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEM NKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAP QNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQ GFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDT AVERGNQLLRRFEKSTKS >gi|223713508|gb|ACDM01000090.1| GENE 31 28362 - 29249 1082 295 aa, chain + ## HITS:1 COG:ugpA KEGG:ns NR:ns ## COG: ugpA COG1175 # Protein_GI_number: 16131324 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1 295 1 295 295 485 100.0 1e-137 MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFV TLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPA VAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAA LQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSG GPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ >gi|223713508|gb|ACDM01000090.1| GENE 32 29246 - 30091 940 281 aa, chain + ## HITS:1 COG:ECs4297 KEGG:ns NR:ns ## COG: ECs4297 COG0395 # Protein_GI_number: 15833551 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Escherichia coli O157:H7 # 1 281 1 281 281 482 99.0 1e-136 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN IWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFIT LMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARID GASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIAT GEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK >gi|223713508|gb|ACDM01000090.1| GENE 33 30093 - 31163 1486 356 aa, chain + ## HITS:1 COG:ugpC KEGG:ns NR:ns ## COG: ugpC COG3839 # Protein_GI_number: 16131322 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli K12 # 1 356 14 369 369 697 100.0 0 MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGD IWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKEAAR ILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQL HRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGSPAM NLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKMTLGIRPEHIALSSQAEGGVPMVMD TLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLAENQLHLFDGETGQRV >gi|223713508|gb|ACDM01000090.1| GENE 34 31160 - 31903 754 247 aa, chain + ## HITS:1 COG:ugpQ KEGG:ns NR:ns ## COG: ugpQ COG0584 # Protein_GI_number: 16131321 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 1 247 1 247 247 505 99.0 1e-143 MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLER TSNGWGVAGELNWQDLLRVDAGSWYSKMFKGEPLPLLSQVAERCREHGMMANIEIKPTTG TGPLTGKMVALAARELWAGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELT ARLGCVSIHLNHKLLNKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI GPNFTAQ >gi|223713508|gb|ACDM01000090.1| GENE 35 31890 - 32330 312 146 aa, chain - ## HITS:1 COG:no KEGG:S4297 NR:ns ## KEGG: S4297 # Name: yhhA # Def: hypothetical protein # Organism: S.flexneri_2457T # Pathway: not_defined # 1 146 1 146 146 157 100.0 1e-37 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML PERRNGDMLNQPSTPQPDIPLKTIGP >gi|223713508|gb|ACDM01000090.1| GENE 36 32450 - 34192 1782 580 aa, chain + ## HITS:1 COG:ggt KEGG:ns NR:ns ## COG: ggt COG0405 # Protein_GI_number: 16131319 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Escherichia coli K12 # 1 580 1 580 580 1100 100.0 0 MIKPTFLRRVAIAALLSGSCFSAAAAPPAPPVSYGVEEDVFHPVRAKQGMVASVDATATQ VGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAK ATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDG FIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPD EFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHI VQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYA KSIADQIDINKAKPSSEIRPGKLAPYESNQTTHYSVVDKDGNAVAVTYTLNTTFGTGIVA GESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTG SPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAK GQKVALKEAMGSTQSIMVGPDGELYGASDPRSVDDLTAGY >gi|223713508|gb|ACDM01000090.1| GENE 37 34230 - 34514 263 94 aa, chain - ## HITS:1 COG:no KEGG:B21_03248 NR:ns ## KEGG: B21_03248 # Name: yrhB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 94 1 94 94 189 100.0 2e-47 MITYHDAFAKANHYLDDADLPVVITLHGRFSQGWYFCFEAREFLETGDEAARLAGNAPFI IDKDSGEIHSLGTAKPLEEYLQDYEIKKATFGLP >gi|223713508|gb|ACDM01000090.1| GENE 38 34714 - 34869 60 51 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3853 NR:ns ## KEGG: EC55989_3853 # Name: yrhD # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 51 4 54 54 89 100.0 4e-17 MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDMLIYLEFYPNHKILIS >gi|223713508|gb|ACDM01000090.1| GENE 39 34964 - 35419 218 151 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_3588 NR:ns ## KEGG: ECIAI1_3588 # Name: yrhA # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 151 14 164 164 241 99.0 8e-63 MNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQPDYLTFLRAMDGF EVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYSISIFTYDIKSNF FEIRDNIGTENIFSSFSDFSSFLNEIMDSCS >gi|223713508|gb|ACDM01000090.1| GENE 40 35455 - 36633 263 392 aa, chain - ## HITS:1 COG:yhhZ_1 KEGG:ns NR:ns ## COG: yhhZ_1 COG3157 # Protein_GI_number: 16131314 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli K12 # 1 170 1 170 170 337 100.0 3e-92 MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSLLNNINNTGLGSQFHGI TFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYYYIQLRGAFLSAIHHQIIE NQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFLPNSKNQTNNRFKTLNSKAIG RLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEKTAGIAIATASILLTKRSNVDTY TEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLANLRKEFNKTVRKNFLIKLAKTSEA SGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGTNDFENLVLIENEPYHKVFTNMQSRIA KGILVGESKITPWAIPSGSIYPPMKNIMDHTK >gi|223713508|gb|ACDM01000090.1| GENE 41 36870 - 37358 347 162 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase [Sphaerobacter thermophilus DSM 20745] # 1 162 1 163 179 138 46 2e-31 MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQERLADRPGIKQLVACIDG DVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTV FVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARVK >gi|223713508|gb|ACDM01000090.1| GENE 42 37592 - 37789 162 65 aa, chain - ## HITS:1 COG:no KEGG:ECS88_3838 NR:ns ## KEGG: ECS88_3838 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 62 20 81 86 123 98.0 2e-27 MRDMPAILAVKYIRQMVTGGAFAEANKGAVDDHDFVLFKVVIYTLAQSGRGSYWSAHNEH KHSRG >gi|223713508|gb|ACDM01000090.1| GENE 43 37691 - 38728 1091 345 aa, chain + ## HITS:1 COG:yhhX KEGG:ns NR:ns ## COG: yhhX COG0673 # Protein_GI_number: 16131312 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 345 1 345 345 702 100.0 0 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEV LNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT PYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVAETKPGLPQDGAFYGLGVHTM DQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHLVKIDYPKFIVHG KKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGR VYDALYQTITHGAPNYVKESEVLTNLEILERGFEQASPSTVTLAK >gi|223713508|gb|ACDM01000090.1| GENE 44 38851 - 39546 896 231 aa, chain + ## HITS:1 COG:yhhW KEGG:ns NR:ns ## COG: yhhW COG1741 # Protein_GI_number: 16131311 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1 231 1 231 231 471 100.0 1e-133 MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHK DMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM PEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDMELYRWALLKDEQSVHQIAAE RRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHADSDSEVLLFDLPPV >gi|223713508|gb|ACDM01000090.1| GENE 45 39770 - 40765 964 331 aa, chain + ## HITS:1 COG:ECs4287 KEGG:ns NR:ns ## COG: ECs4287 COG1609 # Protein_GI_number: 15833541 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 331 1 331 331 652 99.0 0 MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSN ATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNI DGLILTERTHTPRTLKMIEVAGIPVVELMDSKSPCLDIAVGFDNFEAARQMTTAIIARGH RHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSSGIELIRQARREYPQL DGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSI GAERLLARIRGESVTPKMLDLGFTLSPGGSI >gi|223713508|gb|ACDM01000090.1| GENE 46 40943 - 41431 484 162 aa, chain + ## HITS:1 COG:ECs4286 KEGG:ns NR:ns ## COG: ECs4286 COG3265 # Protein_GI_number: 15833540 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconate kinase # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 325 100.0 3e-89 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAA FAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQM LVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK >gi|223713508|gb|ACDM01000090.1| GENE 47 41498 - 42775 1571 425 aa, chain + ## HITS:1 COG:STM3541 KEGG:ns NR:ns ## COG: STM3541 COG2610 # Protein_GI_number: 16766827 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 1 425 22 446 446 674 97.0 0 MKARMHAFLALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHE TGAVDQIAVKMLKSFGHSRAHYAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLV KLVIPLFAGVAAAAAFLVPGPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFI SRYVELHIPDDISEPHLGEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFE FIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLV DSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGA QMAALSICIAGGSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIA FQLLS >gi|223713508|gb|ACDM01000090.1| GENE 48 42832 - 43425 624 197 aa, chain - ## HITS:1 COG:ECs4279 KEGG:ns NR:ns ## COG: ECs4279 COG2095 # Protein_GI_number: 15833533 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli O157:H7 # 1 197 1 197 197 294 100.0 9e-80 MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVRELLIALLVMLVFLFAGEK ILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTI LATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFLRLLGEKGVNALERLMGLILV MMATQMFLDGIRMWMKG >gi|223713508|gb|ACDM01000090.1| GENE 49 43618 - 44721 1146 367 aa, chain + ## HITS:1 COG:ECs4278 KEGG:ns NR:ns ## COG: ECs4278 COG0136 # Protein_GI_number: 15833532 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Escherichia coli O157:H7 # 1 367 1 367 367 746 100.0 0 MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDL EALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMG HLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNP WAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR RMLRQLA >gi|223713508|gb|ACDM01000090.1| GENE 50 44994 - 47180 2638 728 aa, chain + ## HITS:1 COG:glgB KEGG:ns NR:ns ## COG: glgB COG0296 # Protein_GI_number: 16131306 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Escherichia coli K12 # 1 728 1 728 728 1507 100.0 0 MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDATDVWVIEPKTGRKLAKL ECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLR PYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIP GAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFD APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGY QPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS DPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG EWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK WNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMP GDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQ RLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV PRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLAT IWLVREAE >gi|223713508|gb|ACDM01000090.1| GENE 51 47177 - 49150 1409 657 aa, chain + ## HITS:1 COG:glgX KEGG:ns NR:ns ## COG: glgX COG1523 # Protein_GI_number: 16131305 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Escherichia coli K12 # 1 657 1 657 657 1382 100.0 0 MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRYDLPGHSGDIWHGY LPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYR DNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALG HPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETA LDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWT GCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNC PVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAA SSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKE GLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDW SQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQ ILLSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR >gi|223713508|gb|ACDM01000090.1| GENE 52 49168 - 50463 1240 431 aa, chain + ## HITS:1 COG:ECs4275 KEGG:ns NR:ns ## COG: ECs4275 COG0448 # Protein_GI_number: 15833529 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 431 1 431 431 909 100.0 0 MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSN CINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLLPAQQRMKGENWYRGTADA VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGV MAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVFDADYLYELLEEDDRDENSSHDF GKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLASVVPELDMY DRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLVSGGCVISGSVVVQSVLFSRVRVNSFC NIDSAVLLPEVWVGRSCRLRRCVIDRACVIPEGMVIGENAEEDARRFYRSEEGIVLVTRE MLRKLGHKQER >gi|223713508|gb|ACDM01000090.1| GENE 53 50463 - 51896 1336 477 aa, chain + ## HITS:1 COG:ECs4274 KEGG:ns NR:ns ## COG: ECs4274 COG0297 # Protein_GI_number: 15833528 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Escherichia coli O157:H7 # 1 477 1 477 477 974 99.0 0 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVIDAQVVSRR DTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEM ASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLP WSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGR LSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSR LTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFS HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASG FVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK >gi|223713508|gb|ACDM01000090.1| GENE 54 51915 - 54362 2886 815 aa, chain + ## HITS:1 COG:glgP KEGG:ns NR:ns ## COG: glgP COG0058 # Protein_GI_number: 16131302 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Escherichia coli K12 # 1 815 1 815 815 1660 100.0 0 MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRS NRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPG LGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWE FKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASS EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSR HYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHT LMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPS LSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVN PKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKH IIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSN MKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEEL HQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEW TAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL >gi|223713508|gb|ACDM01000090.1| GENE 55 54491 - 54772 164 93 aa, chain + ## HITS:1 COG:ECs4272 KEGG:ns NR:ns ## COG: ECs4272 COG0226 # Protein_GI_number: 15833526 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 73 5 77 505 129 84.0 1e-30 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP >gi|223713508|gb|ACDM01000090.1| GENE 56 54978 - 56483 1714 501 aa, chain - ## HITS:1 COG:glpD KEGG:ns NR:ns ## COG: glpD COG0578 # Protein_GI_number: 16131300 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli K12 # 1 501 1 501 501 991 100.0 0 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYE FRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGS TGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENG LWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVH TQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHF KKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRK LAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYART YGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNAD QQSRVSQWLVEYTQQRLSLAS >gi|223713508|gb|ACDM01000090.1| GENE 57 56673 - 56999 512 108 aa, chain + ## HITS:1 COG:glpE KEGG:ns NR:ns ## COG: glpE COG0607 # Protein_GI_number: 16131299 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 108 1 108 108 212 100.0 2e-55 MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTP VMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEVAYGA >gi|223713508|gb|ACDM01000090.1| GENE 58 57044 - 57874 837 276 aa, chain + ## HITS:1 COG:glpG KEGG:ns NR:ns ## COG: glpG COG0705 # Protein_GI_number: 16131298 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Escherichia coli K12 # 1 276 1 276 276 518 99.0 1e-147 MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPA DPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVMMIACVVVFIAMQILGDQEVM LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLI SALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAG WFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK >gi|223713508|gb|ACDM01000090.1| GENE 59 57891 - 58649 831 252 aa, chain + ## HITS:1 COG:glpR KEGG:ns NR:ns ## COG: glpR COG1349 # Protein_GI_number: 16131297 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 252 1 252 252 491 100.0 1e-139 MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHGGAALPS SSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTTPEAVAHALLNHSNLRIVT NNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGS LLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDAPPPVSVMQ VLTDHHIQLELC >gi|223713508|gb|ACDM01000090.1| GENE 60 58631 - 60229 1274 532 aa, chain - ## HITS:1 COG:rtcR KEGG:ns NR:ns ## COG: rtcR COG4650 # Protein_GI_number: 16131296 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli K12 # 1 532 1 532 532 1051 99.0 0 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS >gi|223713508|gb|ACDM01000090.1| GENE 61 60418 - 61644 1317 408 aa, chain + ## HITS:1 COG:rtcB KEGG:ns NR:ns ## COG: rtcB COG1690 # Protein_GI_number: 16131295 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 408 1 408 408 848 99.0 0 MNYELLTTENAPVKMWTKGVLVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV IPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDK GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ LFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG >gi|223713508|gb|ACDM01000090.1| GENE 62 61648 - 62664 788 338 aa, chain + ## HITS:1 COG:yhgK+J KEGG:ns NR:ns ## COG: yhgK+J COG0430 # Protein_GI_number: 16132255 # Func_class: A RNA processing and modification # Function: RNA 3'-terminal phosphate cyclase # Organism: Escherichia coli K12 # 1 338 2 339 339 628 99.0 1e-180 MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATE ICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEV SGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFNTL QLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRDQGPGNTVSLEV ESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAGAGEF TVAHPSCHLLTNIAVVERFLPVRFSLIETDGVTRVSIE >gi|223713508|gb|ACDM01000090.1| GENE 63 62707 - 65412 2527 901 aa, chain - ## HITS:1 COG:malT KEGG:ns NR:ns ## COG: malT COG2909 # Protein_GI_number: 16131294 # Func_class: K Transcription # Function: ATP-dependent transcriptional regulator # Organism: Escherichia coli K12 # 1 901 1 901 901 1677 100.0 0 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG V >gi|223713508|gb|ACDM01000090.1| GENE 64 66024 - 68417 2783 797 aa, chain + ## HITS:1 COG:ECs4259 KEGG:ns NR:ns ## COG: ECs4259 COG0058 # Protein_GI_number: 15833513 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Escherichia coli O157:H7 # 1 797 1 797 797 1644 99.0 0 MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQR HVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA ACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQV GIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFL RAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELAD YEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKL VKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNG VAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWAND LDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYK RQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDP LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG ANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGD KHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFS SDRSIRDYQARIWQAKR >gi|223713508|gb|ACDM01000090.1| GENE 65 68427 - 70511 2030 694 aa, chain + ## HITS:1 COG:malQ KEGG:ns NR:ns ## COG: malQ COG1640 # Protein_GI_number: 16131292 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Escherichia coli K12 # 1 684 1 684 694 1413 99.0 0 MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQRTATKVAVTPVPNVMVY TSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPTKLPEGYHTLTLTQDDQRA HCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWGIGDFGDLKAMLVDVAKRGGS FIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFHLSEEAQAWWQLPTTQQT LQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDEQMAAFRQFVAEQGDSLFWQAAFDA LHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFCEEHRDDVDFYLWLQWLAYSQFAACWE ISQGYEMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMDP HIITARAYEPFIELLRANMQNCGALRIDHVMSMLRLWWIPYGETADQGAYVHYPVDDLLS ILALESKRHRCMVIGEDLGTVPVEIVGKLRSSGVYSYKVLYFENDHEKTFRAPKAYPEQS MAVAATHDLPTLRGYWESGDLTLGKTLGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCL PKRAGHKASLMSMTPTLNRGLQRYIADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWR RKLSATLESMFADDGVNKLLKDLDRRRRAAAKKK >gi|223713508|gb|ACDM01000090.1| GENE 66 70622 - 71938 1806 438 aa, chain - ## HITS:1 COG:ECs4257 KEGG:ns NR:ns ## COG: ECs4257 COG2610 # Protein_GI_number: 15833511 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli O157:H7 # 1 438 1 438 438 700 100.0 0 MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGS LALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVL MLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTI LAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRA IAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIA MMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLRIALGSATVAAIT AGGIAAPLIATTGVSPELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLE TIISVCGLVGCLLLNMVI >gi|223713508|gb|ACDM01000090.1| GENE 67 72298 - 72873 708 191 aa, chain - ## HITS:1 COG:yhgI_2 KEGG:ns NR:ns ## COG: yhgI_2 COG0694 # Protein_GI_number: 16131290 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Escherichia coli K12 # 97 191 1 95 95 197 100.0 8e-51 MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDL LTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN PQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRDL TEHQRGEHSYY >gi|223713508|gb|ACDM01000090.1| GENE 68 72932 - 73615 241 227 aa, chain - ## HITS:1 COG:yhgH KEGG:ns NR:ns ## COG: yhgH COG1040 # Protein_GI_number: 16131289 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Escherichia coli K12 # 1 227 17 243 243 404 100.0 1e-113 MLTVPGLCWLCRMPLALGHWGICSVCSRATRTDKTLCPQCGLPATHSHLPCGRCLQKPPP WQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVLHARRTTGLQLPDRIVSVP LWQRRHWRRGFNQSDLLCQPLSRWLHCQWDSEAVTRTRATATQHFLSARLRKRNLKNAFR LELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAAAVQVWCLCRTL >gi|223713508|gb|ACDM01000090.1| GENE 69 73653 - 74423 559 256 aa, chain + ## HITS:1 COG:bioH KEGG:ns NR:ns ## COG: bioH COG0596 # Protein_GI_number: 16131288 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 256 1 256 256 518 100.0 1e-147 MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALS LADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGI KPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGL EILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFIS HPAEFCHLLVALKQRV >gi|223713508|gb|ACDM01000090.1| GENE 70 74452 - 75330 740 292 aa, chain - ## HITS:1 COG:yhgA KEGG:ns NR:ns ## COG: yhgA COG5464 # Protein_GI_number: 16131287 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 292 1 292 292 586 100.0 1e-167 MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRES YSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPL LFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVTVMPDDEIMQHRRMALLELIQ KHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHK ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIMRFTGLSEEELAAASQ >gi|223713508|gb|ACDM01000090.1| GENE 71 75533 - 75769 231 78 aa, chain - ## HITS:1 COG:no KEGG:SDY_3666 NR:ns ## KEGG: SDY_3666 # Name: yhgG # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 78 1 78 78 136 100.0 3e-31 MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGS CKSCPEGKACLREWWALR >gi|223713508|gb|ACDM01000090.1| GENE 72 75769 - 78090 2856 773 aa, chain - ## HITS:1 COG:feoB KEGG:ns NR:ns ## COG: feoB COG0370 # Protein_GI_number: 16131285 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Escherichia coli K12 # 1 773 1 773 773 1503 100.0 0 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALN MLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQP LLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDP ALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDKIVLNRFLGLPIFLFVMYLMFLLAI NIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDWLTIFLAQGLGGGINTVLPLVPQIGMM YLFLSFLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRER LMTIMMAPFMSCGARLAIFAVFAAAFFGQNGALAVFSLYMLGIVMAVLTGLMLKYTIMRG EATPFVMELPVYHVPHVKSLIIQTWQRLKGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVD NINDSALASVSRVITPVFKPIGVHEDNWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDE EFNPAEFNLGEELFSAIDETWQSLKDTFSLSVLMNPIEASKGDGEMGTGAMGVMDQKFGS AAAAYSYLIFVLLYVPCISVMGAIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQH PTYSLVCILAVILFNIVVIGLLRRARSRVDIELLATRKSVSSCCAASTTGDCH >gi|223713508|gb|ACDM01000090.1| GENE 73 78107 - 78334 237 75 aa, chain - ## HITS:1 COG:ECs4250 KEGG:ns NR:ns ## COG: ECs4250 COG1918 # Protein_GI_number: 15833504 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Escherichia coli O157:H7 # 1 75 1 75 75 147 100.0 6e-36 MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVL RKKDLALLEVEAVSC >gi|223713508|gb|ACDM01000090.1| GENE 74 78791 - 81112 1644 773 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM 14863] # 1 743 1 743 764 637 48 0.0 MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL SYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIE AGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALDGARYILMERFAEDAALLAKV RDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLN ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPH TGQAAKAAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGA SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRNL KASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTN VTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR LDEQPGETNARRGGGNERPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR >gi|223713508|gb|ACDM01000090.1| GENE 75 81209 - 81685 679 158 aa, chain - ## HITS:1 COG:ECs4248 KEGG:ns NR:ns ## COG: ECs4248 COG0782 # Protein_GI_number: 15833502 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1 158 13 170 170 305 99.0 3e-83 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISI DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP >gi|223713508|gb|ACDM01000090.1| GENE 76 81913 - 82632 897 239 aa, chain + ## HITS:1 COG:ECs4247 KEGG:ns NR:ns ## COG: ECs4247 COG0745 # Protein_GI_number: 15833501 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 447 100.0 1e-126 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA >gi|223713508|gb|ACDM01000090.1| GENE 77 82629 - 83981 1336 450 aa, chain + ## HITS:1 COG:envZ KEGG:ns NR:ns ## COG: envZ COG0642 # Protein_GI_number: 16131281 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 450 1 450 450 899 100.0 0 MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQQFNKVLAYEVRMLMTD KLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWAQHYEFLSHQMAQQLGGPT EVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPLFRYTLAIMLLAIGGAWLFIR IQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAG VSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMAD LNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYGNGWIKVSS GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGML ELGTSERGGLSIRAWLPVPVTRAQGTTKEG >gi|223713508|gb|ACDM01000090.1| GENE 78 84057 - 85679 2004 540 aa, chain - ## HITS:1 COG:pckA KEGG:ns NR:ns ## COG: pckA COG1866 # Protein_GI_number: 16131280 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Escherichia coli K12 # 1 540 1 540 540 1119 100.0 0 MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTG IFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFV VDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQW KEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEK GDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEI YNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFL TADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQ YAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNL AIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL >gi|223713508|gb|ACDM01000090.1| GENE 79 86058 - 87782 1446 574 aa, chain + ## HITS:1 COG:no KEGG:B21_03206 NR:ns ## KEGG: B21_03206 # Name: yhgE # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 574 1 574 574 983 99.0 0 MDNVELSPATRWGMIATGLLQGLVCYLLIAWLSGKNHSWIVYGVPATVAFSSVLLFSVIS FKQKRLWGWLALVFIATLGMSGWLKWQTDGMNPWRAEKALWDFGCYLLLMAMLLLPWIQQ SLRIRNDSSRYRYFYQSVWHNVLILLVIFLANGLTWLVLLLWSELFKLVGITFFNTLFFA TDWFIYLTLGLVTALAVILARTQSRLIDSIQKLFTLIATGLLPLVSLLTLMFIITLPFTG LSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASLPWTGPLRCLIKTALLVAPLYVFVA AWALWLRVAQYGWTVDRLQGVLAVLVLLVWSLGYFVSIVWRKGQNPVVLQGKVNLAVSLL VLVILVLLNSPVLDSMRISVNSHMARYQSGKNTSDQVTIYMLEQSGRYGRAALESLKSDA GFMKDPKRARDLLMALDGEQHLQQQVSEKVLADNVLIAPGSVKPDATFWSALIQDRYNVM TCIEKDACVLVEQDLNSDGQAERILFAFNDDRVIVYGFDSDRKEWDALDMSLLPNEITKE KLLTAAKDGKLGTKPKAWRDLVVDGERLNVNLNE >gi|223713508|gb|ACDM01000090.1| GENE 80 87845 - 88723 1086 292 aa, chain - ## HITS:1 COG:ZyrfI KEGG:ns NR:ns ## COG: ZyrfI COG1281 # Protein_GI_number: 15803904 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Escherichia coli O157:H7 EDL933 # 1 292 3 294 294 585 100.0 1e-167 MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVLAELLVATSLLTATLK FDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITITPS EGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA QQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADA LKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH >gi|223713508|gb|ACDM01000090.1| GENE 81 88748 - 89149 448 133 aa, chain - ## HITS:1 COG:ECs4242 KEGG:ns NR:ns ## COG: ECs4242 COG1188 # Protein_GI_number: 15833496 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Escherichia coli O157:H7 # 1 133 1 133 133 214 100.0 3e-56 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE RRDLLRFKHGDSE >gi|223713508|gb|ACDM01000090.1| GENE 82 89160 - 89828 938 222 aa, chain - ## HITS:1 COG:ECs4241 KEGG:ns NR:ns ## COG: ECs4241 COG1011 # Protein_GI_number: 15833495 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1 222 16 237 237 459 100.0 1e-129 MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHD VQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHP HNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILD AAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM >gi|223713508|gb|ACDM01000090.1| GENE 83 89893 - 92028 1763 711 aa, chain - ## HITS:1 COG:no KEGG:JW3361 NR:ns ## KEGG: JW3361 # Name: yrfF # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 711 1 711 711 1363 100.0 0 MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESL TQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLP PFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESE QIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQ DLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPL DMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPF LPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLR PVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYD YPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTL LLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLIE >gi|223713508|gb|ACDM01000090.1| GENE 84 92348 - 92908 659 186 aa, chain + ## HITS:1 COG:yrfE KEGG:ns NR:ns ## COG: yrfE COG0494 # Protein_GI_number: 16131274 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 186 1 186 186 360 100.0 1e-99 MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHL ILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWL KGQGRV >gi|223713508|gb|ACDM01000090.1| GENE 85 93074 - 95626 2635 850 aa, chain - ## HITS:1 COG:mrcA KEGG:ns NR:ns ## COG: mrcA COG5009 # Protein_GI_number: 16131273 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Escherichia coli K12 # 1 850 9 858 858 1710 99.0 0 MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQ YGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAST ITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAA QVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQF DQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQ QAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQ QATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLA QVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGL TLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDY AAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQG GVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQA LVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTT NSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAY MKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTI IDNGEAQELF >gi|223713508|gb|ACDM01000090.1| GENE 86 95746 - 96525 700 259 aa, chain + ## HITS:1 COG:no KEGG:JW5693 NR:ns ## KEGG: JW5693 # Name: yrfD # Def: predicted pilus assembly protein # Organism: E.coli_J # Pathway: not_defined # 1 259 1 259 259 493 100.0 1e-138 MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW RDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL PPPGGDFAIALGLALGKAY >gi|223713508|gb|ACDM01000090.1| GENE 87 96525 - 97064 288 179 aa, chain + ## HITS:1 COG:yrfC KEGG:ns NR:ns ## COG: yrfC COG3166 # Protein_GI_number: 16131271 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilN # Organism: Escherichia coli K12 # 1 179 1 179 179 253 100.0 1e-67 MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTGSAEARIDAVLLQAEQQ LARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQG TLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL >gi|223713508|gb|ACDM01000090.1| GENE 88 97048 - 97488 191 146 aa, chain + ## HITS:1 COG:no KEGG:ECO103_4111 NR:ns ## KEGG: ECO103_4111 # Name: hofO # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 146 1 146 146 266 100.0 2e-70 MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYR LVDTTPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNV SVSRFSLSVEGDDLLFTLQLETPHEG >gi|223713508|gb|ACDM01000090.1| GENE 89 97478 - 97882 276 134 aa, chain + ## HITS:1 COG:no KEGG:SDY_3687 NR:ns ## KEGG: SDY_3687 # Name: yrfA # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 134 14 147 147 253 100.0 1e-66 MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK WRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTR RTGGKAAKSDADGG >gi|223713508|gb|ACDM01000090.1| GENE 90 97794 - 99032 1085 412 aa, chain + ## HITS:1 COG:hofQ KEGG:ns NR:ns ## COG: hofQ COG4796 # Protein_GI_number: 16131268 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component HofQ # Organism: Escherichia coli K12 # 1 412 1 412 412 738 100.0 0 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL HLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENR SITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQ VELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRIN GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEA VLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLAL GGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE >gi|223713508|gb|ACDM01000090.1| GENE 91 99433 - 99954 542 173 aa, chain + ## HITS:1 COG:ECs4232 KEGG:ns NR:ns ## COG: ECs4232 COG0703 # Protein_GI_number: 15833486 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Escherichia coli O157:H7 # 1 173 68 240 240 321 100.0 4e-88 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFR DREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKR PLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN >gi|223713508|gb|ACDM01000090.1| GENE 92 100011 - 101099 920 362 aa, chain + ## HITS:1 COG:aroB KEGG:ns NR:ns ## COG: aroB COG0337 # Protein_GI_number: 16131267 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Escherichia coli K12 # 1 362 1 362 362 694 100.0 0 MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQA GVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQR GVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELAS GLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGLR ALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLKRA GLPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIADCQ SA >gi|223713508|gb|ACDM01000090.1| GENE 93 101191 - 102477 1069 428 aa, chain + ## HITS:1 COG:damX KEGG:ns NR:ns ## COG: damX COG3266 # Protein_GI_number: 16131266 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 428 1 428 428 484 100.0 1e-137 MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKE RNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQYMMMGVGILVLLLLIIGI GSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTP TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASR DTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAA TSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDN LNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL RQVQADLK >gi|223713508|gb|ACDM01000090.1| GENE 94 102584 - 103420 633 278 aa, chain + ## HITS:1 COG:ECs4229 KEGG:ns NR:ns ## COG: ECs4229 COG0338 # Protein_GI_number: 15833483 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Escherichia coli O157:H7 # 1 278 1 278 278 564 100.0 1e-161 MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLI SLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYN GLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYC DPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRA KLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK >gi|223713508|gb|ACDM01000090.1| GENE 95 103438 - 104115 800 225 aa, chain + ## HITS:1 COG:ECs4228 KEGG:ns NR:ns ## COG: ECs4228 COG0036 # Protein_GI_number: 15833482 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Escherichia coli O157:H7 # 1 225 1 225 225 441 100.0 1e-124 MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYG ITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCKAGLVFNPA TPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGV KVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSELAKVSHE >gi|223713508|gb|ACDM01000090.1| GENE 96 104108 - 104866 945 252 aa, chain + ## HITS:1 COG:gph KEGG:ns NR:ns ## COG: gph COG0546 # Protein_GI_number: 16131263 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Escherichia coli K12 # 1 252 1 252 252 493 100.0 1e-139 MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEERVITWIGNGADVLMER ALTWARQERATQRKTMGKPPVDDDIPAEEQVRILRKLFDRYYGEVAEEGTFLFPHVADTL GALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGGDDVQNKKPHPDPLLLVAERM GIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGEAIDLSQPDVIYQSINDLLPALG LPHSENQESKND >gi|223713508|gb|ACDM01000090.1| GENE 97 104859 - 105863 1175 334 aa, chain + ## HITS:1 COG:trpS KEGG:ns NR:ns ## COG: trpS COG0180 # Protein_GI_number: 16131262 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 334 1 334 334 684 100.0 0 MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKAT LDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYAEN INAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGEIFKVPEPFIP KSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYDVQNK AGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQERYHRFRNDEA FLQQVMKDGAEKASAHASRTLKAVYEAIGFVAKP >gi|223713508|gb|ACDM01000090.1| GENE 98 106153 - 107058 786 301 aa, chain + ## HITS:1 COG:no KEGG:B21_03187 NR:ns ## KEGG: B21_03187 # Name: yhfZ # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 301 1 301 301 605 100.0 1e-172 MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELANECRSSVGLTQAALKTLESSGAIR IERRGRNGSYLVEMDNKALLTHVDINNVVCAMPLPYTRLYEGLASGLKAQFDGIPFYYAH MRGADIRVECLLNGVYDMAVVSRLAAESYLTQKGLCLALELGPHTYVGEHQLICRKGESA NVKRVGLDNRSADQKIMTDVFFGGSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENELT MLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHALLAHQQRVVSGEQEPS Y >gi|223713508|gb|ACDM01000090.1| GENE 99 107075 - 107437 381 120 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C3880 NR:ns ## KEGG: UTI89_C3880 # Name: yhfY # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 120 15 134 134 219 97.0 3e-56 METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASVLMRSRRGE EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV >gi|223713508|gb|ACDM01000090.1| GENE 100 107516 - 108679 1176 387 aa, chain + ## HITS:1 COG:yhfX KEGG:ns NR:ns ## COG: yhfX COG3457 # Protein_GI_number: 16131259 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid racemase # Organism: Escherichia coli K12 # 1 387 1 387 387 792 100.0 0 MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMT KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVADAVEQG TDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPGQESGFALKVLPEIVAEIQ NLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQLAKSGIALEQLNAPSATSCT SLPLLAQYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR RGHAQHALVFTPENQKITETNLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSD VVLVSGIHRGEPEIVGRYDSLGNSLGA >gi|223713508|gb|ACDM01000090.1| GENE 101 108679 - 109905 1247 408 aa, chain + ## HITS:1 COG:yhfW KEGG:ns NR:ns ## COG: yhfW COG1015 # Protein_GI_number: 16131258 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Escherichia coli K12 # 1 408 1 408 408 825 99.0 0 MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQLPTLEKLGLINALGYA PGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRMPFRDVIDRVEQALVSAGW QVERRGDDLQFLWVNQAVAIGDNLEADLGQVYNITANLSVISFDDAIKIGRIVREQVQVG RVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYDNGFQVVHMGYGVDEKVQVPQKL YEAGVPTVLVGKVADIVNNPYGVSWQNLVDSQRIMDITLNEFNTHPTAFICTNIQETDLA GHAEDVARYAERLQVVDRNLARLVEAMQPDDCLVVMADHGNDPTIGHSHHTREVVPVLVY QQGMIATQLGVRTTLSDVGATVCEFFRAPPPQNGRSFLSSLRFAGDTL >gi|223713508|gb|ACDM01000090.1| GENE 102 109902 - 110780 1024 292 aa, chain + ## HITS:1 COG:php KEGG:ns NR:ns ## COG: php COG1735 # Protein_GI_number: 16131257 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Escherichia coli K12 # 1 292 1 292 292 593 100.0 1e-169 MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMG RNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKA GIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLS RVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVML SMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ >gi|223713508|gb|ACDM01000090.1| GENE 103 110791 - 111144 511 117 aa, chain + ## HITS:1 COG:no KEGG:UTI89_C3876 NR:ns ## KEGG: UTI89_C3876 # Name: yhfU # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 1 117 14 130 130 215 100.0 4e-55 MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAAL SIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK >gi|223713508|gb|ACDM01000090.1| GENE 104 111156 - 112460 1412 434 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3782 NR:ns ## KEGG: EC55989_3782 # Name: yhfT # Def: conserved hypothetical protein; putative inner membrane protein # Organism: E.coli_55989 # Pathway: not_defined # 1 434 1 434 434 729 100.0 0 MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYMNRREAGSIAFGLSIGF VASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQLLT ALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLIAAVVVLMTRVVVVRYFPHLN PESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIAIVGALIA AVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVPLIATTALAT GVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRYPSVRNASDNIR NAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQKMAAPVVAVMITGI LLNVLYWLGLFVPA >gi|223713508|gb|ACDM01000090.1| GENE 105 112472 - 113557 976 361 aa, chain + ## HITS:1 COG:no KEGG:JW3339 NR:ns ## KEGG: JW3339 # Name: yhfS # Def: conserved hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 361 1 361 361 662 100.0 0 MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLA DAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDF NDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVAR IGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLV FAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKR GALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIAS I >gi|223713508|gb|ACDM01000090.1| GENE 106 113709 - 114440 690 243 aa, chain - ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 243 23 265 265 499 99.0 1e-141 MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLV ADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATKEKVIEQERVSAAPFCEKL NIPGNSEVFHLCRVMYLDQEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVV SDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDN KRH >gi|223713508|gb|ACDM01000090.1| GENE 107 114540 - 115325 824 261 aa, chain - ## HITS:1 COG:yhfQ KEGG:ns NR:ns ## COG: yhfQ COG0524 # Protein_GI_number: 16131252 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 261 1 261 261 520 100.0 1e-147 MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDL ARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHA AIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDFAFASAPQEDETLRLKMKA IVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVIDTMGAGDSFIAGFLCGWSAGMTL PQAIAQGTACAAKTIQYHGAW >gi|223713508|gb|ACDM01000090.1| GENE 108 115322 - 116152 968 276 aa, chain - ## HITS:1 COG:ECs4223 KEGG:ns NR:ns ## COG: ECs4223 COG1082 # Protein_GI_number: 15833477 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Escherichia coli O157:H7 # 1 275 1 275 275 564 99.0 1e-161 MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ MPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP NVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMV DICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIERGY EGYCTVELVTMYMNEPRLYARQALERFRALLPEDER >gi|223713508|gb|ACDM01000090.1| GENE 109 116202 - 117224 1203 340 aa, chain - ## HITS:1 COG:yhfN KEGG:ns NR:ns ## COG: yhfN COG2222 # Protein_GI_number: 16131249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Escherichia coli K12 # 1 340 8 347 347 725 100.0 0 MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQ TAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGA LTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLAPNAEIGKIKNDL KQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGC VIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQGL HPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLVEY >gi|223713508|gb|ACDM01000090.1| GENE 110 117245 - 118582 1520 445 aa, chain - ## HITS:1 COG:yhfM KEGG:ns NR:ns ## COG: yhfM COG0531 # Protein_GI_number: 16131248 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 445 18 462 462 780 99.0 0 MGSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQM CVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT PIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENF AAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALISSCLLVL VLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLV MCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICA VIVIATGLPAYAFWAKRSRQLNALS >gi|223713508|gb|ACDM01000090.1| GENE 111 118877 - 119044 243 55 aa, chain - ## HITS:1 COG:no KEGG:LF82_3285 NR:ns ## KEGG: LF82_3285 # Name: yhfL # Def: uncharacterized protein YhfL # Organism: E.coli_LF82 # Pathway: not_defined # 1 55 1 55 55 107 100.0 1e-22 MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ >gi|223713508|gb|ACDM01000090.1| GENE 112 119291 - 120664 1467 457 aa, chain - ## HITS:1 COG:cysG_2 KEGG:ns NR:ns ## COG: cysG_2 COG0007 # Protein_GI_number: 16131246 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Escherichia coli K12 # 211 457 1 247 247 503 100.0 1e-142 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTL VEGPFDESLLDTCWLAIAATDDDALNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRS PLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQLRGRVKQQFATMGERRRFWE KLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQ QADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLK GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLITGHL KTGGELDWENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPGEMPVAIVENGTAVTQRVID GTLTQLGELAQQMNSPSLIIIGRVVGLRDKLNWFSNH >gi|223713508|gb|ACDM01000090.1| GENE 113 120683 - 121489 956 268 aa, chain - ## HITS:1 COG:nirCm KEGG:ns NR:ns ## COG: nirCm COG2116 # Protein_GI_number: 16132233 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli K12 # 1 268 1 268 268 468 100.0 1e-132 MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLV MGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMWAILPQTWLGNLVGSVFVA MLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMALRTEGAAKF IAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYTLAGIGHNLLWVTLGNTLSGAVF MGLGYWYATPKANRPVADKFNQTETAAG >gi|223713508|gb|ACDM01000090.1| GENE 114 121615 - 121941 478 108 aa, chain - ## HITS:1 COG:ECs4217 KEGG:ns NR:ns ## COG: ECs4217 COG2146 # Protein_GI_number: 15833471 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1 108 1 108 108 223 100.0 8e-59 MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIA EHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG >gi|223713508|gb|ACDM01000090.1| GENE 115 121938 - 124481 3090 847 aa, chain - ## HITS:1 COG:nirB KEGG:ns NR:ns ## COG: nirB COG1251 # Protein_GI_number: 16131244 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Escherichia coli K12 # 1 847 1 847 847 1740 100.0 0 MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEE LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKG SDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPML MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS TGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA QVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLI VSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPD SAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIE VNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYI LKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGS QRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVE LENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLL AADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLE EEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPV TLVEDNA >gi|223713508|gb|ACDM01000090.1| GENE 116 124743 - 125924 1309 393 aa, chain - ## HITS:1 COG:yhfC KEGG:ns NR:ns ## COG: yhfC COG0477 # Protein_GI_number: 16131243 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 393 1 393 393 684 100.0 0 MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSSMSNTFTFLNAGILISI FLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSAAMFILGVVSGITMSIGTFL VTQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSIEWYWVYACIGLVYVAIFILT FGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILGQLGFISWVPEYAKGLGMSL NDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAGLAAILMYVFNTGTPAHMAWSI LALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVLTCGTIGTMLTFVVTGPIVEHSGPQAA LLTANGLYAVVFVMCFLLGFVSRHRQHNTLTSH >gi|223713508|gb|ACDM01000090.1| GENE 117 126195 - 126767 573 190 aa, chain + ## HITS:1 COG:ECs4214 KEGG:ns NR:ns ## COG: ECs4214 COG0652 # Protein_GI_number: 15833468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Escherichia coli O157:H7 # 1 190 1 190 190 359 100.0 2e-99 MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYV NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADK DSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKP VVILSAKVLP >gi|223713508|gb|ACDM01000090.1| GENE 118 126872 - 127039 129 55 aa, chain + ## HITS:1 COG:no KEGG:SDY_3524 NR:ns ## KEGG: SDY_3524 # Name: yhfG # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 55 1 55 55 72 100.0 4e-12 MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER >gi|223713508|gb|ACDM01000090.1| GENE 119 127029 - 127631 735 200 aa, chain + ## HITS:1 COG:fic KEGG:ns NR:ns ## COG: fic COG2184 # Protein_GI_number: 16131240 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Escherichia coli K12 # 1 200 1 200 200 398 100.0 1e-111 MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRAATIELGPLVRGLPHLR TIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKF VERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMG DLTALQMIFSKVVSEAGESE >gi|223713508|gb|ACDM01000090.1| GENE 120 127663 - 128226 484 187 aa, chain + ## HITS:1 COG:pabA KEGG:ns NR:ns ## COG: pabA COG0512 # Protein_GI_number: 16131239 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Escherichia coli K12 # 1 187 1 187 187 400 100.0 1e-112 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG ISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLAN PLTVTRYHSLVVEPDSLPACFDVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQL LANFLHR >gi|223713508|gb|ACDM01000090.1| GENE 121 128312 - 129532 1328 406 aa, chain + ## HITS:1 COG:argD KEGG:ns NR:ns ## COG: argD COG4992 # Protein_GI_number: 16131238 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1 406 1 406 406 822 100.0 0 MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEYVDFAGGIAVTALGHCH PALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERVVFMNSGTEANETAFKLAR HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVK AVMDDHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLFA YMHYGVTPDILTSAKALGGGFPISAMLTTAEIASAFHPGSHGSTYGGNPLACAVAGAAFD IINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAELKPQYKGRARDFLYA GAEAGVMVLNAGPDVMRFAPSLVVEDADIDEGMQRFAHAVAKVVGA >gi|223713508|gb|ACDM01000090.1| GENE 122 129599 - 131689 1679 696 aa, chain - ## HITS:1 COG:ECs4209 KEGG:ns NR:ns ## COG: ECs4209 COG1289 # Protein_GI_number: 15833463 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 696 1 696 696 1332 100.0 0 MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVPACCNIAGLDTPHKRFF KRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTAELGPLHAKLLPASLLAAI FTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQPLRESLSLLYRELADYCEAKY SLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLSAQNNTDYKRMLRIFQEALDLQE HISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARLRVLADDILYHRLPTRFTMEKQIGA LEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPLYARDLLADKQRRMPLLPALKSYLSLK SPALRNAGRLSVMLSVASLMGTALHLPKSYWILMTVLLVTQNGYGATRLRIVNRSVGTVV GLIIAGVALHFKIPEGYTLTLMLITTLASYLILRKNYGWATVGFTITAVYTLQLLWLNGE QYILPRLIDTIIGCLIAFGGTVWLWPQWQSGLLRKNAHDALEAYQEAIRLILSEDPQPTP LAWQRMRVNQAHNTLYNSLNQAMQEPAFNSHYLADMKLWVTHSQFIVEHINAMTTLAREH RALPPELAQEYLQSCEIAIQRCQQRLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQ RVIGHLNTMHTISSMAWRQRPHHGIWLSRKLRDSKA >gi|223713508|gb|ACDM01000090.1| GENE 123 131740 - 132372 878 210 aa, chain - ## HITS:1 COG:ECs4208 KEGG:ns NR:ns ## COG: ECs4208 COG0664 # Protein_GI_number: 15833462 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 1 210 1 210 210 418 100.0 1e-117 MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ MARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCS RETVGRILKMLEDQNLISAHGKTIVVYGTR >gi|223713508|gb|ACDM01000090.1| GENE 124 132674 - 133078 444 134 aa, chain + ## HITS:1 COG:ECs4207 KEGG:ns NR:ns ## COG: ECs4207 COG1765 # Protein_GI_number: 15833461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 134 1 134 134 257 100.0 3e-69 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR QDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE KAVNITHSYEVVAA >gi|223713508|gb|ACDM01000090.1| GENE 125 133133 - 134002 870 289 aa, chain - ## HITS:1 COG:prkB KEGG:ns NR:ns ## COG: prkB COG3954 # Protein_GI_number: 16131234 # Func_class: C Energy production and conversion # Function: Phosphoribulokinase # Organism: Escherichia coli K12 # 1 289 1 289 289 595 100.0 1e-170 MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDMAIRKAR DAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTPWQPL PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVM DSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFAAKGIPSLDESFVVIHFRNLEGI DFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIMLPLVQRLMEGKKIE >gi|223713508|gb|ACDM01000090.1| GENE 126 134056 - 134274 336 72 aa, chain - ## HITS:1 COG:ECs4205 KEGG:ns NR:ns ## COG: ECs4205 COG3089 # Protein_GI_number: 15833459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 72 1 72 72 130 100.0 4e-31 MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKRQLQCGEAVLVWSELHE TVNIMPRSQFRE >gi|223713508|gb|ACDM01000090.1| GENE 127 134268 - 135230 930 320 aa, chain - ## HITS:1 COG:yheT KEGG:ns NR:ns ## COG: yheT COG0429 # Protein_GI_number: 16131232 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta-hydrolase fold # Organism: Escherichia coli K12 # 1 320 21 340 340 678 100.0 0 MRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSENPAQAQHKPRLVVFHG LEGSLNSPYAHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQR EFGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQ RYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCS AMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPPQVEYQLTEHGGHVGFIGGTLLHPQ MWLESRIPDWLTTYLEAKSC >gi|223713508|gb|ACDM01000090.1| GENE 128 135290 - 137203 2447 637 aa, chain - ## HITS:1 COG:ECs4203 KEGG:ns NR:ns ## COG: ECs4203 COG0488 # Protein_GI_number: 15833457 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 637 1 637 637 1209 100.0 0 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF PGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAI DAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL DLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRAT RLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRF SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG ELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQ GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGAL VVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENANSA QARKDQKRREAELRAQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELT ACLQQQASAKSGLEECEMAWLEAQEQLEQMLLEGQSN >gi|223713508|gb|ACDM01000090.1| GENE 129 137334 - 137885 455 183 aa, chain + ## HITS:1 COG:ECs4202 KEGG:ns NR:ns ## COG: ECs4202 COG2249 # Protein_GI_number: 15833456 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1 183 2 184 184 365 100.0 1e-101 MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLRE HEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRY DALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSAQELASHARAYGDWLANPLSP GGR >gi|223713508|gb|ACDM01000090.1| GENE 130 137885 - 139690 1056 601 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 7 590 9 612 618 411 36 1e-113 MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFS ELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALLAGLLMLTDFAWQAAVVGG IGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW MKVGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGSALFMDALGLSMA LGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVVISVVV LVAVKILVLYLLARLYGVRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLV TVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDEKPWVNDDKPQVIVVGFGRFGQVIGRLLM ANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAESIVITCNEPEDTMK LVEICQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQ AQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQREMQQERRQLDGWDEF E >gi|223713508|gb|ACDM01000090.1| GENE 131 139700 - 139900 225 66 aa, chain + ## HITS:1 COG:Z4708 KEGG:ns NR:ns ## COG: Z4708 COG3529 # Protein_GI_number: 15803863 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Escherichia coli O157:H7 EDL933 # 1 66 1 66 66 120 100.0 6e-28 MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVI GIFHPD >gi|223713508|gb|ACDM01000090.1| GENE 132 139995 - 140585 732 196 aa, chain + ## HITS:1 COG:ECs4200 KEGG:ns NR:ns ## COG: ECs4200 COG1047 # Protein_GI_number: 15833454 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Escherichia coli O157:H7 # 1 148 1 148 196 271 100.0 7e-73 MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV AVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVD GNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHG GEGCCGGKGNGGCGCH >gi|223713508|gb|ACDM01000090.1| GENE 133 140634 - 140852 315 72 aa, chain - ## HITS:1 COG:ECs4199 KEGG:ns NR:ns ## COG: ECs4199 COG2900 # Protein_GI_number: 15833453 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 72 1 72 72 100 100.0 7e-22 MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNI ASQAEETPPPHY >gi|223713508|gb|ACDM01000090.1| GENE 134 141073 - 141885 1002 270 aa, chain + ## HITS:1 COG:ECs4198 KEGG:ns NR:ns ## COG: ECs4198 COG0545 # Protein_GI_number: 15833452 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1 259 1 259 270 416 99.0 1e-116 MKSLFKVTLLATTMAVALHAPITFAAEAAKPATAADSKAAFKNDDQKSAYALGASLGRYM ENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKD AADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKE FDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLV FDVELLDVKPAPKADAKPEADAKAADSAKK >gi|223713508|gb|ACDM01000090.1| GENE 135 142052 - 142774 772 240 aa, chain + ## HITS:1 COG:yheO KEGG:ns NR:ns ## COG: yheO COG2964 # Protein_GI_number: 16131225 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 240 5 244 244 469 100.0 1e-132 MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCS AIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFTRAKSGVLMKSLTIAIRNR EQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFASSVEDLVTQTLEFTIEEVNA DRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIRQFKSGDFQGQDK >gi|223713508|gb|ACDM01000090.1| GENE 136 142774 - 143160 389 128 aa, chain + ## HITS:1 COG:yheN KEGG:ns NR:ns ## COG: yheN COG1553 # Protein_GI_number: 16131224 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Escherichia coli K12 # 1 128 1 128 128 227 100.0 3e-60 MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDL VRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEASL TCDRVVQF >gi|223713508|gb|ACDM01000090.1| GENE 137 143160 - 143519 215 119 aa, chain + ## HITS:1 COG:yheM KEGG:ns NR:ns ## COG: yheM COG2923 # Protein_GI_number: 16131223 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in the oxidation of intracellular sulfur # Organism: Escherichia coli K12 # 1 119 1 119 119 226 100.0 8e-60 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPDAVLARD YIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVILRF >gi|223713508|gb|ACDM01000090.1| GENE 138 143527 - 143814 281 95 aa, chain + ## HITS:1 COG:yheL KEGG:ns NR:ns ## COG: yheL COG2168 # Protein_GI_number: 16131222 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in oxidation of intracellular sulfur # Organism: Escherichia coli K12 # 1 95 1 95 95 181 100.0 4e-46 MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNED LIARGLTGQISNDIILIDYTDFVRLTVKHPSQMAW >gi|223713508|gb|ACDM01000090.1| GENE 139 143880 - 144314 744 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|226956878|ref|YP_002807671.1| 30S ribosomal subunit protein S12 [Escherichia sp. 1_1_43] # 1 144 1 144 144 291 99 2e-77 MCEDVLLRVYEAKAKTRSYLMATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTT TPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRG ALDCSGVKDRKQARSKYGVKRPKA >gi|223713508|gb|ACDM01000090.1| GENE 140 144411 - 144881 777 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803854|ref|NP_289888.1| 30S ribosomal protein S7 [Escherichia coli O157:H7 EDL933] # 1 156 1 156 156 303 100 2e-81 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW >gi|223713508|gb|ACDM01000090.1| GENE 141 144978 - 147092 2340 704 aa, chain + ## HITS:1 COG:ECs4191 KEGG:ns NR:ns ## COG: ECs4191 COG0480 # Protein_GI_number: 15833445 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Escherichia coli O157:H7 # 1 704 1 704 704 1402 100.0 0 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ PQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFT GVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGG EELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILD DGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERF GRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAV EPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVE ANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDI KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIA FKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPL SEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARGK >gi|223713508|gb|ACDM01000090.1| GENE 142 147163 - 147297 176 45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 44 1 44 407 72 72 1e-11 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR Prediction of potential genes in microbial genomes Time: Mon May 16 19:33:42 2011 Seq name: gi|223713507|gb|ACDM01000091.1| Escherichia sp. 4_1_40B cont1.91, whole genome shotgun sequence Length of sequence - 41163 bp Number of predicted genes - 61, with homology - 60 Number of transcription units - 12, operones - 9 average op.length - 6.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 209 - 268 7.1 1 1 Tu 1 . + CDS 311 - 3004 2246 ## JW3300 periplasmic endochitinase + Term 3008 - 3049 4.1 + Prom 3093 - 3152 4.0 2 2 Op 1 9/0.000 + CDS 3173 - 3367 172 ## COG2906 Bacterioferritin-associated ferredoxin 3 2 Op 2 . + CDS 3439 - 3915 626 ## COG2193 Bacterioferritin (cytochrome b1) - Term 3858 - 3893 2.6 4 3 Op 1 . - CDS 3944 - 4621 483 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 5 3 Op 2 . - CDS 4621 - 4911 216 ## EcHS_A3528 general secretion pathway protein M 6 3 Op 3 . - CDS 4928 - 5083 91 ## EcHS_A3528 general secretion pathway protein M 7 3 Op 4 4/0.667 - CDS 5080 - 6243 463 ## COG3297 Type II secretory pathway, component PulL 8 3 Op 5 7/0.000 - CDS 6258 - 7241 509 ## COG3156 Type II secretory pathway, component PulK 9 3 Op 6 12/0.000 - CDS 7234 - 7821 409 ## COG4795 Type II secretory pathway, component PulJ 10 3 Op 7 12/0.000 - CDS 7814 - 8191 188 ## COG2165 Type II secretory pathway, pseudopilin PulG 11 3 Op 8 12/0.000 - CDS 8188 - 8697 287 ## COG2165 Type II secretory pathway, pseudopilin PulG 12 3 Op 9 10/0.000 - CDS 8705 - 9142 499 ## COG2165 Type II secretory pathway, pseudopilin PulG 13 3 Op 10 24/0.000 - CDS 9152 - 10348 909 ## COG1459 Type II secretory pathway, component PulF 14 3 Op 11 6/0.000 - CDS 10345 - 11826 1029 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 15 3 Op 12 . - CDS 11836 - 13788 1561 ## COG1450 Type II secretory pathway, component PulD 16 3 Op 13 . - CDS 13772 - 14485 71 ## COG3031 Type II secretory pathway, component PulC - Prom 14677 - 14736 14.3 + Prom 14682 - 14741 11.4 17 4 Op 1 . + CDS 14767 - 16236 351 ## JW3285 general secretory pathway component, cryptic 18 4 Op 2 . + CDS 16238 - 16657 296 ## B21_03124 hypothetical protein 19 5 Tu 1 . - CDS 16626 - 16832 103 ## - Prom 16865 - 16924 2.2 + Prom 16665 - 16724 4.3 20 6 Op 1 40/0.000 + CDS 16895 - 17206 513 ## PROTEIN SUPPORTED gi|15803848|ref|NP_289882.1| 30S ribosomal protein S10 21 6 Op 2 58/0.000 + CDS 17239 - 17868 1052 ## PROTEIN SUPPORTED gi|15803847|ref|NP_289881.1| 50S ribosomal protein L3 22 6 Op 3 61/0.000 + CDS 17879 - 18484 992 ## PROTEIN SUPPORTED gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 23 6 Op 4 61/0.000 + CDS 18481 - 18783 490 ## PROTEIN SUPPORTED gi|15803845|ref|NP_289879.1| 50S ribosomal protein L23 24 6 Op 5 60/0.000 + CDS 18801 - 19622 1438 ## PROTEIN SUPPORTED gi|15803844|ref|NP_289878.1| 50S ribosomal protein L2 25 6 Op 6 59/0.000 + CDS 19639 - 19917 484 ## PROTEIN SUPPORTED gi|15803843|ref|NP_289877.1| 30S ribosomal protein S19 26 6 Op 7 61/0.000 + CDS 19932 - 20264 537 ## PROTEIN SUPPORTED gi|15803842|ref|NP_289876.1| 50S ribosomal protein L22 27 6 Op 8 50/0.000 + CDS 20282 - 20983 1183 ## PROTEIN SUPPORTED gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 28 6 Op 9 50/0.000 + CDS 20996 - 21406 694 ## PROTEIN SUPPORTED gi|15803840|ref|NP_289874.1| 50S ribosomal protein L16 29 6 Op 10 50/0.000 + CDS 21406 - 21597 301 ## PROTEIN SUPPORTED gi|15803839|ref|NP_289873.1| 50S ribosomal protein L29 30 6 Op 11 50/0.000 + CDS 21597 - 21851 431 ## PROTEIN SUPPORTED gi|15803838|ref|NP_289872.1| 30S ribosomal protein S17 + Term 21873 - 21916 10.3 + Prom 21885 - 21944 7.1 31 7 Op 1 57/0.000 + CDS 22016 - 22387 617 ## PROTEIN SUPPORTED gi|15803837|ref|NP_289871.1| 50S ribosomal protein L14 32 7 Op 2 48/0.000 + CDS 22398 - 22712 516 ## PROTEIN SUPPORTED gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24 33 7 Op 3 50/0.000 + CDS 22727 - 23266 911 ## PROTEIN SUPPORTED gi|15803835|ref|NP_289869.1| 50S ribosomal protein L5 34 7 Op 4 50/0.000 + CDS 23281 - 23586 513 ## PROTEIN SUPPORTED gi|15803834|ref|NP_289868.1| 30S ribosomal protein S14 35 7 Op 5 55/0.000 + CDS 23620 - 24012 641 ## PROTEIN SUPPORTED gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8 36 7 Op 6 46/0.000 + CDS 24025 - 24558 902 ## PROTEIN SUPPORTED gi|15803832|ref|NP_289866.1| 50S ribosomal protein L6 37 7 Op 7 56/0.000 + CDS 24568 - 24921 572 ## PROTEIN SUPPORTED gi|15803831|ref|NP_289865.1| 50S ribosomal protein L18 38 7 Op 8 50/0.000 + CDS 24936 - 25439 834 ## PROTEIN SUPPORTED gi|15803830|ref|NP_289864.1| 30S ribosomal protein S5 39 7 Op 9 48/0.000 + CDS 25443 - 25622 291 ## PROTEIN SUPPORTED gi|15803829|ref|NP_289863.1| 50S ribosomal protein L30 40 7 Op 10 53/0.000 + CDS 25626 - 26060 715 ## PROTEIN SUPPORTED gi|16131180|ref|NP_417760.1| 50S ribosomal subunit protein L15 41 7 Op 11 3/0.667 + CDS 26068 - 27399 1258 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 42 7 Op 12 . + CDS 27431 - 27547 198 ## PROTEIN SUPPORTED gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36 + Term 27577 - 27618 8.2 + Prom 27589 - 27648 3.9 43 8 Op 1 48/0.000 + CDS 27694 - 28050 586 ## PROTEIN SUPPORTED gi|15803825|ref|NP_289859.1| 30S ribosomal protein S13 44 8 Op 2 36/0.000 + CDS 28067 - 28456 669 ## PROTEIN SUPPORTED gi|15803824|ref|NP_289858.1| 30S ribosomal protein S11 45 8 Op 3 26/0.000 + CDS 28490 - 29110 1038 ## PROTEIN SUPPORTED gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 46 8 Op 4 50/0.000 + CDS 29136 - 30125 1011 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 47 8 Op 5 . + CDS 30166 - 30549 636 ## PROTEIN SUPPORTED gi|15803821|ref|NP_289855.1| 50S ribosomal protein L17 + Term 30570 - 30595 -0.5 + Prom 30568 - 30627 6.0 48 9 Op 1 . + CDS 30656 - 31024 234 ## SSON_3434 hypothetical protein 49 9 Op 2 . + CDS 31035 - 31460 367 ## COG0789 Predicted transcriptional regulators + Term 31671 - 31723 9.5 50 10 Op 1 7/0.000 - CDS 31731 - 32141 483 ## COG1970 Large-conductance mechanosensitive channel - Prom 32175 - 32234 6.9 - Term 32230 - 32269 8.6 51 10 Op 2 8/0.000 - CDS 32271 - 33647 1191 ## COG0569 K+ transport systems, NAD-binding component 52 10 Op 3 20/0.000 - CDS 33669 - 34931 1115 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Term 34959 - 34987 2.1 53 10 Op 4 26/0.000 - CDS 35004 - 35951 946 ## COG0223 Methionyl-tRNA formyltransferase 54 10 Op 5 . - CDS 35966 - 36475 520 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 36514 - 36573 3.5 + Prom 36409 - 36468 2.4 55 11 Op 1 8/0.000 + CDS 36605 - 37729 391 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 56 11 Op 2 7/0.000 + CDS 37701 - 38174 660 ## COG2922 Uncharacterized protein conserved in bacteria 57 11 Op 3 6/0.000 + CDS 38203 - 38745 159 ## COG0551 Zn-finger domain associated with topoisomerase type I 58 11 Op 4 8/0.000 + CDS 38750 - 39322 405 ## COG0009 Putative translation factor (SUA5) 59 11 Op 5 . + CDS 39327 - 40145 377 ## COG0169 Shikimate 5-dehydrogenase 60 11 Op 6 . + CDS 40142 - 40399 175 ## B21_03082 hypothetical protein 61 12 Tu 1 . - CDS 40375 - 40929 446 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - Prom 41052 - 41111 5.8 Predicted protein(s) >gi|223713507|gb|ACDM01000091.1| GENE 1 311 - 3004 2246 897 aa, chain + ## HITS:1 COG:no KEGG:JW3300 NR:ns ## KEGG: JW3300 # Name: chiA # Def: periplasmic endochitinase # Organism: E.coli_J # Pathway: Amino sugar and nucleotide sugar metabolism [PATH:ecj00520] # 1 897 1 897 897 1625 100.0 0 MKLNIFTKSMIGMGLVCSALPALAMEAWNNQQGGNKYQVIFDGKIYENAWWVSSTNCPGK AKANDATNPWRLKRTATAAEISQFGNTLSCEKSGSSSSSNSNTPASNTPANGGSATPAQG TVPSNSSVVAWNKQQGGQTWYVVFNGAVYKNAWWVASSNCPGDAKSNDASNPWRYVRAAT ATEISETSNPQSCTSAPQPSPDVKPAPDVKPAPDVQPAPADKSNDNYAVVAWKGQEGSST WYVIYNGGIYKNAWWVGAANCPGDAKENDASNPWRYVRAATATEISQYGNPGSCSVKPDN NGGAVTPVDPTPETPVTPTPDNSEPSTPADSVNDYSLQAWSGQEGSEIYHVIFNGNVYKN AWWVGSKDCPRGTSAENSNNPWRLERTATAAELSQYGNPTTCEIDNGGVIVADGFQASKA YSADSIVDYNDAHYKTSVDQDAWGFVPGGDNPWKKYEPAKAWSASTVYVKGDRVVVDGQA YEALFWTQSDNPALVANQNATGSNSRPWKPLGKAQSYSNEELNNAPQFNPETLYASDTLI RFNGVNYISQSKVQKVSPSDSNPWRVFVDWTGTKERVGTPKKAWPKHVYAPYVDFTLNTI PDLAALAKNHNVNHFTLAFVVSKDANTCLPTWGTAYGMQNYAQYSKIKALREAGGDVMLS IGGANNAPLAASCKNVDDLMQHYYDIVDNLNLKVLDFDIEGTWVADQASIERRNLAVKKV QDKWKSEGKDIAIWYTLPILPTGLTPEGMNVLSDAKAKGVELAGVNVMTMDYGNAICQSA NTEGQNIHGKCATSAIANLHSQLKGLHPNKSDAEIDAMMGTTPMVGVNDVQGEVFYLSDA RLVMQDAQKRNLGMVGIWSIARDLPGGTNLSPEFHGLTKEQAPKYAFSEIFAPFTKQ >gi|223713507|gb|ACDM01000091.1| GENE 2 3173 - 3367 172 64 aa, chain + ## HITS:1 COG:bfd KEGG:ns NR:ns ## COG: bfd COG2906 # Protein_GI_number: 16131216 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin-associated ferredoxin # Organism: Escherichia coli K12 # 1 64 1 64 64 119 100.0 1e-27 MYVCLCNGISDKKIRQAVRQFSPHSFQQLKKFIPVGNQCGKCVRAAREVMEDELMQLPEF KESA >gi|223713507|gb|ACDM01000091.1| GENE 3 3439 - 3915 626 158 aa, chain + ## HITS:1 COG:bfr KEGG:ns NR:ns ## COG: bfr COG2193 # Protein_GI_number: 16131215 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin (cytochrome b1) # Organism: Escherichia coli K12 # 1 158 1 158 158 277 99.0 6e-75 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIE RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRNMM IEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG >gi|223713507|gb|ACDM01000091.1| GENE 4 3944 - 4621 483 225 aa, chain - ## HITS:1 COG:hofD KEGG:ns NR:ns ## COG: hofD COG1989 # Protein_GI_number: 16131214 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Escherichia coli K12 # 1 225 1 225 225 361 99.0 1e-100 MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILC VAAAIACALAPFTPIVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYG LIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLI ASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY >gi|223713507|gb|ACDM01000091.1| GENE 5 4621 - 4911 216 96 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A3528 NR:ns ## KEGG: EcHS_A3528 # Name: not_defined # Def: general secretion pathway protein M # Organism: E.coli_HS # Pathway: Bacterial secretion system [PATH:ecx03070] # 1 96 66 161 161 184 100.0 7e-46 MQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTLTIHPVTAPLENVSRW LTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ >gi|223713507|gb|ACDM01000091.1| GENE 6 4928 - 5083 91 51 aa, chain - ## HITS:1 COG:no KEGG:EcHS_A3528 NR:ns ## KEGG: EcHS_A3528 # Name: not_defined # Def: general secretion pathway protein M # Organism: E.coli_HS # Pathway: Bacterial secretion system [PATH:ecx03070] # 1 50 9 58 161 96 98.0 2e-19 MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEHQSHATKN >gi|223713507|gb|ACDM01000091.1| GENE 7 5080 - 6243 463 387 aa, chain - ## HITS:1 COG:gspL KEGG:ns NR:ns ## COG: gspL COG3297 # Protein_GI_number: 16131212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulL # Organism: Escherichia coli K12 # 1 387 2 388 388 716 100.0 0 MPESLMVIRSSSTLRKHWEWMTFSADSVSSVHTLTDDLPLESLADQPGAGNVHLLIPPEG LLYRSLTLPNAKYKLTAQTLQWLAEETLPDNTQDWHWTVVDKQNESVEVIGIQSEKLSRY LERLHTAGLNVTRVLPDGCYLPWEVDSWTLVNQQTSWLIRSAAHAFNELDEHWLQHLAAQ FPPENMLCYGVVPHGVAAANPLIQHPEIPSLSLYSADIAFQRYDMLHGIFRKQKTVSKSG KWLARLAVSCLVLAILSFVGSRSIALWHTLKIEDQLQQQQQETWQRYFPQIKRTHNFRFY FKQQLAQQYPEAVPLLYHLQTLLLEHPELQLMEANYSQKQKSLTLKMSAKSEANIDRFCE LTQSWLPMEKTEKDPVSGVWTVRNSGK >gi|223713507|gb|ACDM01000091.1| GENE 8 6258 - 7241 509 327 aa, chain - ## HITS:1 COG:gspK KEGG:ns NR:ns ## COG: gspK COG3156 # Protein_GI_number: 16131211 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulK # Organism: Escherichia coli K12 # 1 327 1 327 327 587 100.0 1e-167 MNNEQRGVALLIVLMLLALMAALAADMTLSFHSQLQRTRQVNHHLQRQYDIELAEKLALA SLTQDVKDNDRQTTLQQYWAQPQQLQLEDGNTVKWQLRDAQHCFNLNALAKISDDPLASP DFPAQVFSALLINAGIDRGNTDEIVQSIADYIDVDDSPRFHGAEDSFYQSQTPPRHSANQ MLFLTGELRQIKGITENIYQRLIPYVCVLPTTELSINLNMLTENDIPLFRALFLNNITDA DARVLLQKRPREGWLTTDAFLYWAQQDFSGVKPLVAQVKRHLFPYSRYFTLSTESISDEQ SQGWQSHIFFNRKQQSAQIYRRTLQLY >gi|223713507|gb|ACDM01000091.1| GENE 9 7234 - 7821 409 195 aa, chain - ## HITS:1 COG:gspJ KEGG:ns NR:ns ## COG: gspJ COG4795 # Protein_GI_number: 16131210 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Escherichia coli K12 # 1 195 1 195 195 325 100.0 4e-89 MINRQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQLQRTITILDN DLLQLVARRNRSTDKIMVLGEEAIFTTQSRDPLAPLSEAQTLLTVHWYLRNHTLYRAVRT SVDGRKDQPAQAMLEHVESFLLESNSGESQELPLSVTLHLQTQQYGGLQRRFALPEQLAR EESPAQTQAGNNNHE >gi|223713507|gb|ACDM01000091.1| GENE 10 7814 - 8191 188 125 aa, chain - ## HITS:1 COG:gspI KEGG:ns NR:ns ## COG: gspI COG2165 # Protein_GI_number: 16131209 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1 125 14 138 138 205 100.0 2e-53 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSF GEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTRYQSIDNKSG QAQDD >gi|223713507|gb|ACDM01000091.1| GENE 11 8188 - 8697 287 169 aa, chain - ## HITS:1 COG:hofH KEGG:ns NR:ns ## COG: hofH COG2165 # Protein_GI_number: 16131208 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1 169 1 169 169 320 100.0 9e-88 MNQQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETAARFTAALELAIDRATL SGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQNDWDEELSIHLQPFKPDDSN QPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLDQTLARDTRP >gi|223713507|gb|ACDM01000091.1| GENE 12 8705 - 9142 499 145 aa, chain - ## HITS:1 COG:hofG KEGG:ns NR:ns ## COG: hofG COG2165 # Protein_GI_number: 16131207 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1 145 1 145 145 259 100.0 1e-69 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL LSAGPDGEMGTEDDITNWGLSKKKK >gi|223713507|gb|ACDM01000091.1| GENE 13 9152 - 10348 909 398 aa, chain - ## HITS:1 COG:hofF KEGG:ns NR:ns ## COG: hofF COG1459 # Protein_GI_number: 16131206 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Escherichia coli K12 # 1 398 1 398 398 717 100.0 0 MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSE LTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPT LFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVII LLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGN NRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQR LANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRI ALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN >gi|223713507|gb|ACDM01000091.1| GENE 14 10345 - 11826 1029 493 aa, chain - ## HITS:1 COG:gspE KEGG:ns NR:ns ## COG: gspE COG2804 # Protein_GI_number: 16131205 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli K12 # 1 493 1 493 493 933 100.0 0 MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEA RLEAVFHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDLLNEDSAAPVIRLINAILSEAI KETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLDIAEKRIPQD GRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSLNNLGMTAADKQDLENLIQL PHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVDMSF ARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTLHTNSASGAVTRLRDMGV ESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTPVGCPHCHQ SGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKNGLQKVISGDTSWDE VMRVASATLESEA >gi|223713507|gb|ACDM01000091.1| GENE 15 11836 - 13788 1561 650 aa, chain - ## HITS:1 COG:gspD KEGG:ns NR:ns ## COG: gspD COG1450 # Protein_GI_number: 16131204 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Escherichia coli K12 # 1 650 5 654 654 1224 100.0 0 MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQG TISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPG VGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEV IKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLI ISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNAR KPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDG NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVY RSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR >gi|223713507|gb|ACDM01000091.1| GENE 16 13772 - 14485 71 237 aa, chain - ## HITS:1 COG:gspC KEGG:ns NR:ns ## COG: gspC COG3031 # Protein_GI_number: 16131203 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulC # Organism: Escherichia coli K12 # 1 237 35 271 271 449 99.0 1e-126 MNYFHTTIVKNGQIINQPTNAFQSDFSLAALWRNENHAGVKDANPVAVNQETPKLSIALN GIVLTSNDETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKTSVVFETHGHYEKVTLH PGLPDIIKQPDSESQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALR INNLSLTHPDEVSQALSLLLTQQSAQFTIRRNGVPRLINVSVGELTGMNGLRHERTQ >gi|223713507|gb|ACDM01000091.1| GENE 17 14767 - 16236 351 489 aa, chain + ## HITS:1 COG:no KEGG:JW3285 NR:ns ## KEGG: JW3285 # Name: gspA # Def: general secretory pathway component, cryptic # Organism: E.coli_J # Pathway: not_defined # 1 489 1 489 489 949 100.0 0 MSTRREVILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDKHRRVITLSLVVSWQGKA AWIVTDDNAAEQGCRDSAWTRDEMAGQLLHALHRTDSRCPLIIIENAHLNHRRILDDLQR AISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEHELKASILEGQNIDQPDLLLT ARVLKRIALLCRGDRRKLALAGETIRLLQQAEQTSVFTAKQWRMIYRILGDNRPRKMQLA VVMSGTIIALTCGWLLLSSFTATLPVPAWLIPVTPVVKQDMTKDIAHVVMRDSEALSVLY GVWGYEVPADSAWCDQAVRAGLACKSGNASLQTLVDQNLPWIASLKVGDKKLPVVVVRVG EASVDVLVGQQTWTLTHKWFESVWTGDYLLLWKMSPEGESTITRDSSEEEILWLETMLNR ALHISTEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHLWQVAGESAYLYRDEANI SPETTVKGK >gi|223713507|gb|ACDM01000091.1| GENE 18 16238 - 16657 296 139 aa, chain + ## HITS:1 COG:no KEGG:B21_03124 NR:ns ## KEGG: B21_03124 # Name: pioO # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 139 1 139 139 263 99.0 2e-69 MFEFYIAAREQKETGHPGIFSRQKHSTIIYVICLLLICLWFAGMVLVGGYARQLWVLWIV KAEVTVEAETPAFKQSTQHYFFKKQPLPVVESVEEEDDPGVAVENAPSSSEDEENTVEES EEKAGLRERVKNALNELER >gi|223713507|gb|ACDM01000091.1| GENE 19 16626 - 16832 103 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGECNRSYVAPRLGALLGSQIRLTEVQIEPAVNYDKPAHYTYLTTERKRIASKVNSLRVI SQVRSVHF >gi|223713507|gb|ACDM01000091.1| GENE 20 16895 - 17206 513 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803848|ref|NP_289882.1| 30S ribosomal protein S10 [Escherichia coli O157:H7 EDL933] # 1 103 1 103 103 202 100 3e-51 MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKD ARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG >gi|223713507|gb|ACDM01000091.1| GENE 21 17239 - 17868 1052 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803847|ref|NP_289881.1| 50S ribosomal protein L3 [Escherichia coli O157:H7 EDL933] # 1 209 1 209 209 409 99 1e-113 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLTNDGYRAIQVTTGAKKANRV TKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAG TVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRV DAERNLLLVKGAVPGATGSDLIVKPAVKA >gi|223713507|gb|ACDM01000091.1| GENE 22 17879 - 18484 992 201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933] # 1 201 1 201 201 386 100 1e-106 MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPW RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV VEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSL IAFDKVVMTADAVKQVEEMLA >gi|223713507|gb|ACDM01000091.1| GENE 23 18481 - 18783 490 100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803845|ref|NP_289879.1| 50S ribosomal protein L23 [Escherichia coli O157:H7 EDL933] # 1 100 1 100 100 193 100 2e-48 MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNT LVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE >gi|223713507|gb|ACDM01000091.1| GENE 24 18801 - 19622 1438 273 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803844|ref|NP_289878.1| 50S ribosomal protein L2 [Escherichia coli O157:H7 EDL933] # 1 273 1 273 273 558 100 1e-158 MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQ AYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV DAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGE MRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNF GKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK >gi|223713507|gb|ACDM01000091.1| GENE 25 19639 - 19917 484 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803843|ref|NP_289877.1| 30S ribosomal protein S19 [Escherichia coli O157:H7 EDL933] # 1 92 1 92 92 191 100 8e-48 MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPV FVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK >gi|223713507|gb|ACDM01000091.1| GENE 26 19932 - 20264 537 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803842|ref|NP_289876.1| 50S ribosomal protein L22 [Escherichia coli O157:H7 EDL933] # 1 110 1 110 110 211 100 6e-54 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEH NDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR >gi|223713507|gb|ACDM01000091.1| GENE 27 20282 - 20983 1183 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. Sakai] # 1 233 1 233 233 460 100 1e-129 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK >gi|223713507|gb|ACDM01000091.1| GENE 28 20996 - 21406 694 136 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803840|ref|NP_289874.1| 50S ribosomal protein L16 [Escherichia coli O157:H7 EDL933] # 1 136 1 136 136 271 100 4e-72 MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQ GKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLA AAKLPIKTTFVTKTVM >gi|223713507|gb|ACDM01000091.1| GENE 29 21406 - 21597 301 63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803839|ref|NP_289873.1| 50S ribosomal protein L29 [Escherichia coli O157:H7 EDL933] # 1 63 1 63 63 120 100 1e-26 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK AGA >gi|223713507|gb|ACDM01000091.1| GENE 30 21597 - 21851 431 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803838|ref|NP_289872.1| 30S ribosomal protein S17 [Escherichia coli O157:H7 EDL933] # 1 84 1 84 84 170 100 1e-41 MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVE IRECRPLSKTKSWTLVRVVEKAVL >gi|223713507|gb|ACDM01000091.1| GENE 31 22016 - 22387 617 123 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803837|ref|NP_289871.1| 50S ribosomal protein L14 [Escherichia coli O157:H7 EDL933] # 1 123 1 123 123 242 100 3e-63 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP EVL >gi|223713507|gb|ACDM01000091.1| GENE 32 22398 - 22712 516 104 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24 [Escherichia coli O157:H7 EDL933] # 1 104 1 104 104 203 100 2e-51 MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVE KEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK >gi|223713507|gb|ACDM01000091.1| GENE 33 22727 - 23266 911 179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803835|ref|NP_289869.1| 50S ribosomal protein L5 [Escherichia coli O157:H7 EDL933] # 1 179 1 179 179 355 100 2e-97 MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAI SGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAK SFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK >gi|223713507|gb|ACDM01000091.1| GENE 34 23281 - 23586 513 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803834|ref|NP_289868.1| 30S ribosomal protein S14 [Escherichia coli O157:H7 EDL933] # 1 101 1 101 101 202 100 3e-51 MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQ RNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW >gi|223713507|gb|ACDM01000091.1| GENE 35 23620 - 24012 641 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8 [Escherichia coli O157:H7 EDL933] # 1 130 1 130 130 251 100 5e-66 MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELE LTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAG LGGEIICYVA >gi|223713507|gb|ACDM01000091.1| GENE 36 24025 - 24558 902 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803832|ref|NP_289866.1| 50S ribosomal protein L6 [Escherichia coli O157:H7 EDL933] # 1 177 1 177 177 352 100 3e-96 MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYAD GWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAG ITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK >gi|223713507|gb|ACDM01000091.1| GENE 37 24568 - 24921 572 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803831|ref|NP_289865.1| 50S ribosomal protein L18 [Escherichia coli O157:H7 EDL933] # 1 117 1 117 117 224 100 5e-58 MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF >gi|223713507|gb|ACDM01000091.1| GENE 38 24936 - 25439 834 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803830|ref|NP_289864.1| 30S ribosomal protein S5 [Escherichia coli O157:H7 EDL933] # 1 167 1 167 167 325 100 2e-88 MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAI QKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGV HNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK >gi|223713507|gb|ACDM01000091.1| GENE 39 25443 - 25622 291 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803829|ref|NP_289863.1| 50S ribosomal protein L30 [Escherichia coli O157:H7 EDL933] # 1 59 1 59 59 116 100 2e-25 MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE >gi|223713507|gb|ACDM01000091.1| GENE 40 25626 - 26060 715 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16131180|ref|NP_417760.1| 50S ribosomal subunit protein L15 [Escherichia coli str. K-12 substr. MG1655] # 1 144 1 144 144 280 100 1e-74 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR LPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPV TVRGLRVTKGARAAIEAAGGKIEE >gi|223713507|gb|ACDM01000091.1| GENE 41 26068 - 27399 1258 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 12 440 16 444 447 489 56 1e-137 MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTI IEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYT RYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE RGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERG QRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGW NWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGE QTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQV QTLMMSSQYESALKKANLKGYGR >gi|223713507|gb|ACDM01000091.1| GENE 42 27431 - 27547 198 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36 [Escherichia coli O157:H7 EDL933] # 1 38 1 38 38 80 100 1e-14 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG >gi|223713507|gb|ACDM01000091.1| GENE 43 27694 - 28050 586 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803825|ref|NP_289859.1| 30S ribosomal protein S13 [Escherichia coli O157:H7 EDL933] # 1 118 1 118 118 230 99 1e-59 MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV AKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK >gi|223713507|gb|ACDM01000091.1| GENE 44 28067 - 28456 669 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803824|ref|NP_289858.1| 30S ribosomal protein S11 [Escherichia coli O157:H7 EDL933] # 1 129 1 129 129 262 100 3e-69 MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTP FAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNG CRPPKKRRV >gi|223713507|gb|ACDM01000091.1| GENE 45 28490 - 29110 1038 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 EDL933] # 1 206 1 206 206 404 100 1e-112 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG TFKRKPERSDLSADINEHLIVELYSK >gi|223713507|gb|ACDM01000091.1| GENE 46 29136 - 30125 1011 329 aa, chain + ## HITS:1 COG:ECs4160 KEGG:ns NR:ns ## COG: ECs4160 COG0202 # Protein_GI_number: 15833414 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Escherichia coli O157:H7 # 1 329 1 329 329 613 100.0 1e-175 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL TEIKDVLASRGLSLGMRLENWPPASIADE >gi|223713507|gb|ACDM01000091.1| GENE 47 30166 - 30549 636 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15803821|ref|NP_289855.1| 50S ribosomal protein L17 [Escherichia coli O157:H7 EDL933] # 1 127 1 127 127 249 100 2e-65 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE KAEAAAE >gi|223713507|gb|ACDM01000091.1| GENE 48 30656 - 31024 234 122 aa, chain + ## HITS:1 COG:no KEGG:SSON_3434 NR:ns ## KEGG: SSON_3434 # Name: yhdN # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 122 1 122 122 224 100.0 1e-57 MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPEL EQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKIN DN >gi|223713507|gb|ACDM01000091.1| GENE 49 31035 - 31460 367 141 aa, chain + ## HITS:1 COG:ECs4157 KEGG:ns NR:ns ## COG: ECs4157 COG0789 # Protein_GI_number: 15833411 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 247 100.0 4e-66 MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRHARQLGFS LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHS SVYCSILEALEQGASGVKSGC >gi|223713507|gb|ACDM01000091.1| GENE 50 31731 - 32141 483 136 aa, chain - ## HITS:1 COG:ECs4156 KEGG:ns NR:ns ## COG: ECs4156 COG1970 # Protein_GI_number: 15833410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 136 1 136 136 243 100.0 5e-65 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEV LLTEIRDLLKEQNNRS >gi|223713507|gb|ACDM01000091.1| GENE 51 32271 - 33647 1191 458 aa, chain - ## HITS:1 COG:ECs4155 KEGG:ns NR:ns ## COG: ECs4155 COG0569 # Protein_GI_number: 15833409 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Escherichia coli O157:H7 # 1 458 1 458 458 871 100.0 0 MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLRE AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPID HLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPH IDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGG GNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDL FIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLS HVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVM IANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL >gi|223713507|gb|ACDM01000091.1| GENE 52 33669 - 34931 1115 420 aa, chain - ## HITS:1 COG:sun KEGG:ns NR:ns ## COG: sun COG0144 # Protein_GI_number: 16131168 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Escherichia coli K12 # 1 420 10 429 429 841 100.0 0 MAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARP MTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQ EELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWL ALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEH ILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT LVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK >gi|223713507|gb|ACDM01000091.1| GENE 53 35004 - 35951 946 315 aa, chain - ## HITS:1 COG:fmt KEGG:ns NR:ns ## COG: fmt COG0223 # Protein_GI_number: 16131167 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Escherichia coli K12 # 1 315 1 315 315 612 100.0 1e-175 MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL ITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLE IEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDL LNSRREWFVPGNRLV >gi|223713507|gb|ACDM01000091.1| GENE 54 35966 - 36475 520 169 aa, chain - ## HITS:1 COG:ECs4152 KEGG:ns NR:ns ## COG: ECs4152 COG0242 # Protein_GI_number: 15833406 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Escherichia coli O157:H7 # 1 169 1 169 169 291 100.0 3e-79 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV IDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA >gi|223713507|gb|ACDM01000091.1| GENE 55 36605 - 37729 391 374 aa, chain + ## HITS:1 COG:smf KEGG:ns NR:ns ## COG: smf COG0758 # Protein_GI_number: 16132235 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Escherichia coli K12 # 1 374 1 374 374 746 99.0 0 MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSI ESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSW YGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVNGVSIAVLGNGLNTIHPRRHA RLAASLLEQGGALVSEFPLDVPPLAYNFSRRNRIISGLSKGVLVVEAALRSGSLVTARCA LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYS PDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVR LRRACHVRRTNVFV >gi|223713507|gb|ACDM01000091.1| GENE 56 37701 - 38174 660 157 aa, chain + ## HITS:1 COG:smg KEGG:ns NR:ns ## COG: smg COG2922 # Protein_GI_number: 16131165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 157 1 157 157 270 100.0 5e-73 MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNALLWLEKLADYQEGLAEP MQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVIERVLALDNAEFEL DDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH >gi|223713507|gb|ACDM01000091.1| GENE 57 38203 - 38745 159 180 aa, chain + ## HITS:1 COG:ZyrdD KEGG:ns NR:ns ## COG: ZyrdD COG0551 # Protein_GI_number: 15803811 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Escherichia coli O157:H7 EDL933 # 9 180 1 172 172 328 99.0 3e-90 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE >gi|223713507|gb|ACDM01000091.1| GENE 58 38750 - 39322 405 190 aa, chain + ## HITS:1 COG:yrdC KEGG:ns NR:ns ## COG: yrdC COG0009 # Protein_GI_number: 16131163 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Escherichia coli K12 # 1 190 1 190 190 374 100.0 1e-104 MNNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLIL IAANYEQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTD HPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLNPSEIRD ALTGELFRQG >gi|223713507|gb|ACDM01000091.1| GENE 59 39327 - 40145 377 272 aa, chain + ## HITS:1 COG:aroE KEGG:ns NR:ns ## COG: aroE COG0169 # Protein_GI_number: 16131162 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli K12 # 1 272 1 272 272 551 100.0 1e-157 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGL RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM LVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA >gi|223713507|gb|ACDM01000091.1| GENE 60 40142 - 40399 175 85 aa, chain + ## HITS:1 COG:no KEGG:B21_03082 NR:ns ## KEGG: B21_03082 # Name: yrdB # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 85 1 85 85 155 100.0 4e-37 MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHR WDLEEEAENLIQEQSEDDQGWVWLP >gi|223713507|gb|ACDM01000091.1| GENE 61 40375 - 40929 446 184 aa, chain - ## HITS:1 COG:ECs4145 KEGG:ns NR:ns ## COG: ECs4145 COG0663 # Protein_GI_number: 15833399 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli O157:H7 # 1 184 73 256 256 385 100.0 1e-107 MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNI QDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVED DVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGN QTQP Prediction of potential genes in microbial genomes Time: Mon May 16 19:34:37 2011 Seq name: gi|223713506|gb|ACDM01000092.1| Escherichia sp. 4_1_40B cont1.92, whole genome shotgun sequence Length of sequence - 71771 bp Number of predicted genes - 64, with homology - 63 Number of transcription units - 45, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.833 - CDS 186 - 1043 734 ## COG0796 Glutamate racemase 2 1 Op 2 . - CDS 988 - 2832 1777 ## COG4206 Outer membrane cobalamin receptor protein - Prom 3068 - 3127 3.3 + Prom 3117 - 3176 6.0 3 2 Tu 1 . + CDS 3201 - 4301 1231 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Term 4293 - 4333 9.3 4 3 Op 1 . - CDS 4341 - 4700 411 ## LF82_3412 inner membrane protein YijD 5 3 Op 2 . - CDS 4700 - 5404 667 ## COG1309 Transcriptional regulator - Prom 5626 - 5685 4.2 + Prom 5590 - 5649 4.2 6 4 Tu 1 . + CDS 5681 - 7081 431 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Term 6791 - 6816 -0.8 7 5 Tu 1 . - CDS 7064 - 7981 929 ## COG0583 Transcriptional regulator - Prom 8015 - 8074 5.1 - Term 8191 - 8225 3.4 8 6 Op 1 2/0.833 - CDS 8248 - 9621 1845 ## COG0165 Argininosuccinate lyase 9 6 Op 2 8/0.000 - CDS 9682 - 10455 1053 ## COG0548 Acetylglutamate kinase 10 6 Op 3 . - CDS 10466 - 11470 919 ## COG0002 Acetylglutamate semialdehyde dehydrogenase - Prom 11582 - 11641 6.1 + Prom 11516 - 11575 3.3 11 7 Tu 1 . + CDS 11624 - 12775 1028 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Prom 13106 - 13165 5.3 12 8 Tu 1 . + CDS 13412 - 16024 3129 ## COG2352 Phosphoenolpyruvate carboxylase + Term 16042 - 16075 5.2 + Prom 16122 - 16181 3.5 13 9 Tu 1 . + CDS 16206 - 17939 1991 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase + Term 18080 - 18112 1.3 + Prom 17962 - 18021 3.0 14 10 Tu 1 . + CDS 18154 - 19005 758 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 19084 - 19118 -1.0 15 11 Op 1 2/0.833 - CDS 18992 - 19333 301 ## COG1445 Phosphotransferase system fructose-specific component IIB 16 11 Op 2 11/0.000 - CDS 19335 - 20213 571 ## COG1180 Pyruvate-formate lyase-activating enzyme 17 11 Op 3 4/0.389 - CDS 20179 - 22476 2311 ## COG1882 Pyruvate-formate lyase 18 11 Op 4 7/0.167 - CDS 22527 - 22847 551 ## COG1445 Phosphotransferase system fructose-specific component IIB 19 11 Op 5 . - CDS 22862 - 23941 1331 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 24106 - 24165 3.3 + Prom 24006 - 24065 4.2 20 12 Op 1 2/0.833 + CDS 24250 - 26751 2664 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 21 12 Op 2 3/0.667 + CDS 26763 - 27425 860 ## COG0176 Transaldolase 22 12 Op 3 1/0.944 + CDS 27436 - 28539 1286 ## COG0371 Glycerol dehydrogenase and related enzymes + Prom 28580 - 28639 3.4 23 13 Tu 1 . + CDS 28814 - 29431 538 ## COG3738 Uncharacterized protein conserved in bacteria 24 14 Tu 1 1/0.944 - CDS 29458 - 30363 985 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 30388 - 30447 1.7 - Term 30402 - 30447 13.5 25 15 Tu 1 4/0.389 - CDS 30456 - 32636 2855 ## COG0376 Catalase (peroxidase I) - Prom 32779 - 32838 5.8 - Term 32839 - 32893 10.1 26 16 Tu 1 . - CDS 32965 - 33855 1025 ## COG0685 5,10-methylenetetrahydrofolate reductase - Prom 34006 - 34065 6.0 - Term 34019 - 34053 2.2 27 17 Op 1 5/0.333 - CDS 34204 - 36636 2804 ## COG0527 Aspartokinases 28 17 Op 2 . - CDS 36639 - 37799 1220 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 37836 - 37895 4.8 + Prom 37882 - 37941 7.3 29 18 Tu 1 . + CDS 38076 - 38393 429 ## COG3060 Transcriptional regulator of met regulon + Prom 38440 - 38499 2.4 30 19 Tu 1 . + CDS 38577 - 39185 587 ## JW3908 predicted peptidoglycan peptidase + Term 39213 - 39238 -0.5 - Term 39185 - 39238 5.7 31 20 Tu 1 . - CDS 39246 - 39458 384 ## PROTEIN SUPPORTED gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31 - Prom 39519 - 39578 5.2 + Prom 39577 - 39636 2.8 32 21 Tu 1 . + CDS 39661 - 41859 2272 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase + Prom 41867 - 41926 5.1 33 22 Op 1 . + CDS 42015 - 43040 905 ## COG1609 Transcriptional regulators + Prom 43043 - 43102 2.3 34 22 Op 2 7/0.167 + CDS 43237 - 44091 582 ## COG3087 Cell division protein + Term 44129 - 44160 4.1 + Prom 44105 - 44164 1.7 35 23 Op 1 24/0.000 + CDS 44184 - 44714 627 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 36 23 Op 2 6/0.278 + CDS 44724 - 46055 1200 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Term 46084 - 46117 2.9 37 24 Op 1 7/0.167 + CDS 46122 - 47048 998 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase + Prom 47056 - 47115 5.3 38 24 Op 2 . + CDS 47141 - 47626 555 ## COG0684 Demethylmenaquinone methyltransferase + Term 47630 - 47665 5.1 - Term 47621 - 47649 1.0 39 25 Tu 1 . - CDS 47711 - 47950 504 ## COG3074 Uncharacterized protein conserved in bacteria + Prom 48216 - 48275 5.3 40 26 Op 1 18/0.000 + CDS 48381 - 49226 760 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 41 26 Op 2 4/0.389 + CDS 49249 - 50757 1946 ## COG0554 Glycerol kinase 42 26 Op 3 4/0.389 + CDS 50763 - 51902 1357 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins + Term 51923 - 51958 5.1 43 27 Tu 1 . + CDS 51999 - 52745 885 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Term 52667 - 52719 4.6 44 28 Op 1 3/0.667 - CDS 52750 - 53178 435 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 45 28 Op 2 3/0.667 - CDS 53205 - 53504 328 ## COG3691 Uncharacterized protein conserved in bacteria - Prom 53540 - 53599 3.3 46 29 Tu 1 . - CDS 53716 - 54156 468 ## COG3152 Predicted membrane protein - Prom 54180 - 54239 2.5 + Prom 54174 - 54233 5.8 47 30 Tu 1 . + CDS 54257 - 54856 549 ## EcolC_4098 hypothetical protein + Term 54908 - 54938 2.1 48 31 Tu 1 . + CDS 54964 - 55731 939 ## COG0149 Triosephosphate isomerase + Term 55741 - 55775 5.2 49 32 Tu 1 . - CDS 55786 - 56541 574 ## COG2134 CDP-diacylglycerol pyrophosphatase - Prom 56565 - 56624 4.8 - Term 56576 - 56638 1.8 50 33 Tu 1 . - CDS 56648 - 57637 1199 ## COG1613 ABC-type sulfate transport system, periplasmic component - Prom 57677 - 57736 6.2 - Term 57741 - 57773 2.3 51 34 Tu 1 . - CDS 57957 - 58919 1243 ## COG0205 6-phosphofructokinase - Prom 58999 - 59058 4.2 - Term 59005 - 59052 1.3 52 35 Tu 1 . - CDS 59100 - 60002 485 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 60072 - 60131 5.1 - Term 60080 - 60110 4.3 53 36 Tu 1 . - CDS 60151 - 60651 265 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein - Prom 60678 - 60737 2.0 + Prom 60685 - 60744 2.1 54 37 Op 1 40/0.000 + CDS 60801 - 61499 889 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 55 37 Op 2 . + CDS 61496 - 62869 1548 ## COG0642 Signal transduction histidine kinase + Term 62978 - 63013 -0.7 - Term 62883 - 62946 0.8 56 38 Tu 1 . - CDS 62975 - 63649 522 ## COG2258 Uncharacterized protein conserved in bacteria - Prom 63685 - 63744 3.7 - Term 63735 - 63779 8.0 57 39 Tu 1 . - CDS 63798 - 64787 1025 ## ECSE_4198 2-keto-3-deoxygluconate permease - Prom 64912 - 64971 7.3 - Term 64950 - 64986 6.4 58 40 Tu 1 . - CDS 65041 - 65661 571 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 65712 - 65771 7.2 + Prom 65715 - 65774 6.4 59 41 Tu 1 . + CDS 65946 - 66980 1296 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 60 42 Tu 1 . - CDS 66977 - 67825 669 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 67520 - 67579 2.9 61 43 Tu 1 . + CDS 67817 - 67951 95 ## + Term 68009 - 68064 1.8 62 44 Tu 1 . - CDS 67899 - 68735 416 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 68792 - 68851 2.6 + Prom 68940 - 68999 2.4 63 45 Op 1 6/0.278 + CDS 69023 - 70492 1327 ## COG1070 Sugar (pentulose and hexulose) kinases 64 45 Op 2 . + CDS 70489 - 71748 1400 ## COG4806 L-rhamnose isomerase Predicted protein(s) >gi|223713506|gb|ACDM01000092.1| GENE 1 186 - 1043 734 285 aa, chain - ## HITS:1 COG:murI KEGG:ns NR:ns ## COG: murI COG0796 # Protein_GI_number: 16131805 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Escherichia coli K12 # 1 285 5 289 289 532 99.0 1e-151 MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPY GEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKP AARLTANGIVGLLATRGTIKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSL DALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLE HEAPDAKSADANIAFCMAMTPGAEQLLPVLQRYGFETLEKLAVLG >gi|223713506|gb|ACDM01000092.1| GENE 2 988 - 2832 1777 614 aa, chain - ## HITS:1 COG:btuB KEGG:ns NR:ns ## COG: btuB COG4206 # Protein_GI_number: 16131804 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Escherichia coli K12 # 1 614 1 614 614 1158 100.0 0 MIKKASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST SVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFP IALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQL GDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG YGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPH YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGI YLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ LYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKAR IKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITY QYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQ TAGREYTLSGSYTF >gi|223713506|gb|ACDM01000092.1| GENE 3 3201 - 4301 1231 366 aa, chain + ## HITS:1 COG:trmA KEGG:ns NR:ns ## COG: trmA COG2265 # Protein_GI_number: 16131803 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1 366 1 366 366 738 100.0 0 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG VLLTAK >gi|223713506|gb|ACDM01000092.1| GENE 4 4341 - 4700 411 119 aa, chain - ## HITS:1 COG:no KEGG:LF82_3412 NR:ns ## KEGG: LF82_3412 # Name: yijD # Def: inner membrane protein YijD # Organism: E.coli_LF82 # Pathway: not_defined # 1 119 1 119 119 222 100.0 4e-57 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE >gi|223713506|gb|ACDM01000092.1| GENE 5 4700 - 5404 667 234 aa, chain - ## HITS:1 COG:ECs4894 KEGG:ns NR:ns ## COG: ECs4894 COG1309 # Protein_GI_number: 15834148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 409 100.0 1e-114 MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREA GIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIV FSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE >gi|223713506|gb|ACDM01000092.1| GENE 6 5681 - 7081 431 466 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 7 453 4 443 458 170 26 2e-41 MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAV SRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFV DEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVL IYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY EKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQ TAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVG KTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI IHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAALNGLNRLF >gi|223713506|gb|ACDM01000092.1| GENE 7 7064 - 7981 929 305 aa, chain - ## HITS:1 COG:ECs4890 KEGG:ns NR:ns ## COG: ECs4890 COG0583 # Protein_GI_number: 15834144 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 596 100.0 1e-170 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA GMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPLFDEPMLLAIYEDHPWANREC VPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL PALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKV LKQAV >gi|223713506|gb|ACDM01000092.1| GENE 8 8248 - 9621 1845 457 aa, chain - ## HITS:1 COG:argH KEGG:ns NR:ns ## COG: argH COG0165 # Protein_GI_number: 16131798 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Escherichia coli K12 # 1 457 1 457 457 887 100.0 0 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW CKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS AAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDED VYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG >gi|223713506|gb|ACDM01000092.1| GENE 9 9682 - 10455 1053 257 aa, chain - ## HITS:1 COG:ECs4888 KEGG:ns NR:ns ## COG: ECs4888 COG0548 # Protein_GI_number: 15834142 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1 257 2 258 258 453 100.0 1e-127 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK KNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGH VGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSD VSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE QLPALFNGMPMGTRILA >gi|223713506|gb|ACDM01000092.1| GENE 10 10466 - 11470 919 334 aa, chain - ## HITS:1 COG:argC KEGG:ns NR:ns ## COG: argC COG0002 # Protein_GI_number: 16131796 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Escherichia coli K12 # 1 334 1 334 334 656 100.0 0 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPL QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF THQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVI NATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGADVIFTPHLGNFPRGIL ETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL IIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI >gi|223713506|gb|ACDM01000092.1| GENE 11 11624 - 12775 1028 383 aa, chain + ## HITS:1 COG:argE KEGG:ns NR:ns ## COG: argE COG0624 # Protein_GI_number: 16131795 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 1 383 1 383 383 800 100.0 0 MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRN KFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFI LDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHK GHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLN LGHIHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHP PIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTLCPTLVLGPGSINQAHQPDEY LETRFIKPTRELITQVIHHFCWH >gi|223713506|gb|ACDM01000092.1| GENE 12 13412 - 16024 3129 870 aa, chain + ## HITS:1 COG:ppc KEGG:ns NR:ns ## COG: ppc COG2352 # Protein_GI_number: 16131794 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Escherichia coli K12 # 1 870 14 883 883 1701 100.0 0 MLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVAR AFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLEL VLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRK LRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDR DGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYR YLMKNLRSRLMATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIAN GDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRE LNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEA GIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAA SWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQ GEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVR ENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLG AGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWP LGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQA EKEGQEPDPRVEQALMVTIAGIAAGMRNTG >gi|223713506|gb|ACDM01000092.1| GENE 13 16206 - 17939 1991 577 aa, chain + ## HITS:1 COG:yijP KEGG:ns NR:ns ## COG: yijP COG2194 # Protein_GI_number: 16131793 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 577 1 577 577 1149 100.0 0 MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTNGIRDSLLFSSLWLIPV FLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYF SLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALLYGLILHPIAMNTFIKNKPFE KTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNENNALPPLANFKDESGNEPRTLV LVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLTVFNNVVTSRPYTIEILQQALTFAN EKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQS AREYDTNVLKPFQEVLNDPAPKKLIIVHLLGTHIKYKYRYPENQGKFDGNTDHVPPGLNA EELESYNDYDNANLYNDHVVASLIKDFKAANPNGFLVYFSDHGEEVYDTPPHKTQGRNED NPTRHMYTIPFLLWTSEKWQATHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDGYDPTRS VVNPQFKETTRWIGNPYKKNALIDYDTLPYGDQVGNQ >gi|223713506|gb|ACDM01000092.1| GENE 14 18154 - 19005 758 283 aa, chain + ## HITS:1 COG:yijO KEGG:ns NR:ns ## COG: yijO COG2207 # Protein_GI_number: 16131792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 283 1 283 283 551 100.0 1e-157 MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATL VPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE RYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE >gi|223713506|gb|ACDM01000092.1| GENE 15 18992 - 19333 301 113 aa, chain - ## HITS:1 COG:frwD KEGG:ns NR:ns ## COG: frwD COG1445 # Protein_GI_number: 16131791 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Escherichia coli K12 # 1 113 1 113 113 207 100.0 3e-54 MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVA LLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE >gi|223713506|gb|ACDM01000092.1| GENE 16 19335 - 20213 571 292 aa, chain - ## HITS:1 COG:pflC KEGG:ns NR:ns ## COG: pflC COG1180 # Protein_GI_number: 16131790 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli K12 # 1 292 1 292 292 600 100.0 1e-172 MTSSAGQRISCNVVETRRDDVARIFNIQRYSLNDGEGIRTVVFFKGCPHLCPWCANPESI SGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGG VTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMD ATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLNIRQ IHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGLQVTVGG >gi|223713506|gb|ACDM01000092.1| GENE 17 20179 - 22476 2311 765 aa, chain - ## HITS:1 COG:pflD KEGG:ns NR:ns ## COG: pflD COG1882 # Protein_GI_number: 16131789 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1 765 1 765 765 1553 100.0 0 MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRAKATAYILEHVEISIRD EELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFAISEEDKRIYREELFPYWE KRSMKDFINGQMTDEVKAATNTQIFSINQTDKGQGHIIIDYPRLLNHGLGELVAQMQQHC QQQPENHFYQAALLLLEASQKHILRYAELAETMAANCTDAQRREELLTIAEISRHNAQHK PQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYMLPFYQTSLTQGEDAAFLKELLESL WVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLTENGRSAVNVLSFLCLDAYQSVQLPQP NLGVRTNALIDTPFLMKTAETIRFGTGIPQIFNDEVVVPAFLNRGVSLEDARDYSVVGCV ELSIPGRTYGLHDIAMFNLLKVMEICLHENEGNAALTYEGLLEQIRAKISHYITLMVEGS NICDIGHRDWAPVPLLSSFISDCLEKGRDITDGGARYNFSGVQGIGIANLSDSLHALKGM VFEQQRLSFDELLSVLKANFATPEGEKVRARLINRFEKYGNDIDEVDNISAELLRHYCKE VEKYQNPRGGYFTPGSYTVSAHVPLGSVVGATPDGRFAGEQLADGGLSPMLGQDAQGPTA VLKSVSKLDNTLLSNGTLLNVKFTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNAD TLREAQQRPQDYAGLVVRVAGYSAFFVELSKEIQDDIIRRTAHQL >gi|223713506|gb|ACDM01000092.1| GENE 18 22527 - 22847 551 106 aa, chain - ## HITS:1 COG:STM4113 KEGG:ns NR:ns ## COG: STM4113 COG1445 # Protein_GI_number: 16767378 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 106 1 106 106 162 96.0 2e-40 MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMV ILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA >gi|223713506|gb|ACDM01000092.1| GENE 19 22862 - 23941 1331 359 aa, chain - ## HITS:1 COG:frwC KEGG:ns NR:ns ## COG: frwC COG1299 # Protein_GI_number: 16131787 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 1 359 1 359 359 566 100.0 1e-161 MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGAVPDAVADPNLKKLFDI GVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAGFFGALIAGIIGGIVVHYL KKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGALTNSLTQWLQGMQQGSIVML AVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAIAAVGICIPPLGMGLATLIGRKN FSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTAALVGAQCYAG WGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVLKSLARKNGSSTDEKEDDLDLDFEIN >gi|223713506|gb|ACDM01000092.1| GENE 20 24250 - 26751 2664 833 aa, chain + ## HITS:1 COG:ptsA_1 KEGG:ns NR:ns ## COG: ptsA_1 COG1080 # Protein_GI_number: 16131785 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 123 687 1 565 565 1100 99.0 0 MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRKGNAKSALALIGTDTLA GDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDELEPLPVSLTNLNPQIIRA RTVCSGSAGGILTPISSLDLNALGNLPAAKGVDAEQSALENGLTLVLKNIEFRLLDSDGA TSAILEAHRSLAGDTSLREHLLAGVSAGLSCAEAIVASANHFCEEFSRSSSSYLQERALD VRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELTPSQFLELDKNHLKGLLLKSGGTTS HTVILARSFNIPTLVGVDIDALTPWQQQTIYIDGNAGAIVVEPGEAVARYYQQEARVQDA LREQQRVWLTQQARTADGIRIEIAANIAHSVEAQAAFGNGAEGVGLFRTEMLYMDRTSAP GESELYNIFCQALESANGRSIIVRTMDIGGDKPVDYLNIPAEANPFLGYRAVRIYEEYAS LFTTQLRSILRASAHGSLKIMIPMISSMEEILWVKEKLAEAKQQLRNEHIPFDEKIQLGI MLEVPSVMFIIDQCCEEIDFFSIGSNDLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYA VQAVHRQGKWIGLCGELGAKGSVLPLLVGLGLDELSMSAPSIPAAKARMAQLDSRECRKL LNQAMACRTSLEVEHLLAQFRMTQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGR CRYPRKLEADLWAREAVFSTGLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFI IMLTLNKHAAGDQHMRIFSRLARRIMHEEFRNALVNAASADAIASLLQHELEL >gi|223713506|gb|ACDM01000092.1| GENE 21 26763 - 27425 860 220 aa, chain + ## HITS:1 COG:talC KEGG:ns NR:ns ## COG: talC COG0176 # Protein_GI_number: 16131784 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli K12 # 1 220 1 220 220 389 100.0 1e-108 MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGDEGILFAQT MSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKILKKEGITTLGTAVYSAAQGLLA ALAGAKYVAPYVNRVDAQGGDGIRTVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAG CESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTTHL >gi|223713506|gb|ACDM01000092.1| GENE 22 27436 - 28539 1286 367 aa, chain + ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 367 14 380 380 702 100.0 0 MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVE IAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIAST DAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEAR ACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYL SGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALS HAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQ RFLQEWE >gi|223713506|gb|ACDM01000092.1| GENE 23 28814 - 29431 538 205 aa, chain + ## HITS:1 COG:ECs4873 KEGG:ns NR:ns ## COG: ECs4873 COG3738 # Protein_GI_number: 15834127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 205 1 205 205 413 96.0 1e-115 MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGARQQIGSTLFYDPAYVQL TYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFAEYPQKWKLKRPDSNIDHR RVPNLETWFSRHDKTRPTSKNPSDYQAGDIVSWRLDNGLAHIGVVSDGFARDGTPLVIHN IGAGAQEEDVLFNWRMVGHYRYFVK >gi|223713506|gb|ACDM01000092.1| GENE 24 29458 - 30363 985 301 aa, chain - ## HITS:1 COG:yijE KEGG:ns NR:ns ## COG: yijE COG0697 # Protein_GI_number: 16131781 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 301 12 312 312 489 100.0 1e-138 MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTALRCIFGALVLFIVLLLR GRGMRPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGE RLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILSGVSWGASAIVAKRLYARHPR VDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFWALAYSAILATALAWSLWLFVLK NLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKR I >gi|223713506|gb|ACDM01000092.1| GENE 25 30456 - 32636 2855 726 aa, chain - ## HITS:1 COG:katG KEGG:ns NR:ns ## COG: katG COG0376 # Protein_GI_number: 16131780 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase (peroxidase I) # Organism: Escherichia coli K12 # 1 726 1 726 726 1427 100.0 0 MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVDLLNQHSNRSNPLGEDF DYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGA GRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFG FGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLS AAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWAST YGSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIP DPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKS RYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRG GDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLADIIVLAGVVGVEKA ASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARLDVSTTESLLIDKAQ QLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESK ELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNL DRFDLL >gi|223713506|gb|ACDM01000092.1| GENE 26 32965 - 33855 1025 296 aa, chain - ## HITS:1 COG:metF KEGG:ns NR:ns ## COG: metF COG0685 # Protein_GI_number: 16131779 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Escherichia coli K12 # 1 296 1 296 296 611 100.0 1e-175 MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY GANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD LPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRA ITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFD GLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPGL >gi|223713506|gb|ACDM01000092.1| GENE 27 34204 - 36636 2804 810 aa, chain - ## HITS:1 COG:metL_1 KEGG:ns NR:ns ## COG: metL_1 COG0527 # Protein_GI_number: 16131778 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1 448 1 448 448 881 100.0 0 MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDMMVVSAAGSTTNQLINW LKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAFVSDLERLAALLDSGINDA VYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAERAAQPQVDEGLSYPLLQQLL VQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADP RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIER VLASGTGARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLL QFCYTSEVADSALKILDEAGLPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQPV EFTWQSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNIGSRWLELFARE QSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEESLFLWMRAHPY DDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQIHDAFEKTGRHWLYN ATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLT EPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNE QMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRD NPLVIRGPGAGRDVTAGAIQSDINRLAQLL >gi|223713506|gb|ACDM01000092.1| GENE 28 36639 - 37799 1220 386 aa, chain - ## HITS:1 COG:metB KEGG:ns NR:ns ## COG: metB COG0626 # Protein_GI_number: 16131777 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1 386 1 386 386 773 100.0 0 MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRA LAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL FVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYL LLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML SFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLL RISTGIEDGEDLIADLENGFRAANKG >gi|223713506|gb|ACDM01000092.1| GENE 29 38076 - 38393 429 105 aa, chain + ## HITS:1 COG:ECs4867 KEGG:ns NR:ns ## COG: ECs4867 COG3060 # Protein_GI_number: 15834121 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of met regulon # Organism: Escherichia coli O157:H7 # 1 105 1 105 105 198 100.0 2e-51 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY >gi|223713506|gb|ACDM01000092.1| GENE 30 38577 - 39185 587 202 aa, chain + ## HITS:1 COG:no KEGG:JW3908 NR:ns ## KEGG: JW3908 # Name: yiiX # Def: predicted peptidoglycan peptidase # Organism: E.coli_J # Pathway: not_defined # 1 202 1 202 202 365 100.0 1e-100 MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATHTDYSHTGMLVIRNKKP YVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYDFSFS WSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSSPQVQAKLKERYGKNIPLEETVVS PQAVFDAPQLTTVAKEWPLFSW >gi|223713506|gb|ACDM01000092.1| GENE 31 39246 - 39458 384 70 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31 [Escherichia coli O157:H7 EDL933] # 1 70 1 70 70 152 100 5e-36 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRF NKRFNIPGSK >gi|223713506|gb|ACDM01000092.1| GENE 32 39661 - 41859 2272 732 aa, chain + ## HITS:1 COG:priA KEGG:ns NR:ns ## COG: priA COG1198 # Protein_GI_number: 16131773 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Escherichia coli K12 # 1 732 1 732 732 1477 100.0 0 MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDASELPLNEL KAVVEVLDSEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFA TEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEFNDAALQALRKKGLCDLASET PEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLEN VLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIV IGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPA LETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQ VILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCG STHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQ MLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHH PEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLI LSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIINGTLALINTIPDSRK VKWVLDVDPIEG >gi|223713506|gb|ACDM01000092.1| GENE 33 42015 - 43040 905 341 aa, chain + ## HITS:1 COG:ECs4861 KEGG:ns NR:ns ## COG: ECs4861 COG1609 # Protein_GI_number: 15834115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 341 1 341 341 687 100.0 0 MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGR NVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLII TKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAVNYLY EQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP >gi|223713506|gb|ACDM01000092.1| GENE 34 43237 - 44091 582 284 aa, chain + ## HITS:1 COG:ECs4860 KEGG:ns NR:ns ## COG: ECs4860 COG3087 # Protein_GI_number: 15834114 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli O157:H7 # 1 284 36 319 319 388 99.0 1e-108 MVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPG VRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQR QRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPA HTTAQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDS KITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG >gi|223713506|gb|ACDM01000092.1| GENE 35 44184 - 44714 627 176 aa, chain + ## HITS:1 COG:ECs4859 KEGG:ns NR:ns ## COG: ECs4859 COG5405 # Protein_GI_number: 15834113 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 332 100.0 3e-91 MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFEL FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL IAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA >gi|223713506|gb|ACDM01000092.1| GENE 36 44724 - 46055 1200 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4 443 8 466 466 466 51 1e-130 MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTG VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR YRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAA PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI DADYVSKHLDALVADEDLSRFIL >gi|223713506|gb|ACDM01000092.1| GENE 37 46122 - 47048 998 308 aa, chain + ## HITS:1 COG:menA KEGG:ns NR:ns ## COG: menA COG1575 # Protein_GI_number: 16131768 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Escherichia coli K12 # 1 308 1 308 308 570 99.0 1e-163 MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPLVALLALITAGLLQILS NLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIITVVLICLSGLALVAVACHT LADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLIP ALILPATACGLLATAVLNINNLRDINSDRENGKNTLVVRLGEVNARRYHACLLMGSLVCL ALFNLFSLHSLWGWLFLLAAPLLMKQARYVMREMDPVAMRPMLERTVKGALLTNLLFVLG IFLSQWAA >gi|223713506|gb|ACDM01000092.1| GENE 38 47141 - 47626 555 161 aa, chain + ## HITS:1 COG:ECs4856 KEGG:ns NR:ns ## COG: ECs4856 COG0684 # Protein_GI_number: 15834110 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Escherichia coli O157:H7 # 1 161 1 161 161 299 100.0 1e-81 MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRV LVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAA GEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE >gi|223713506|gb|ACDM01000092.1| GENE 39 47711 - 47950 504 79 aa, chain - ## HITS:1 COG:ECs4853 KEGG:ns NR:ns ## COG: ECs4853 COG3074 # Protein_GI_number: 15834107 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 79 3 81 81 85 100.0 2e-17 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE QQNGWQERLQALLGRMEEV >gi|223713506|gb|ACDM01000092.1| GENE 40 48381 - 49226 760 281 aa, chain + ## HITS:1 COG:ECs4852 KEGG:ns NR:ns ## COG: ECs4852 COG0580 # Protein_GI_number: 15834106 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Escherichia coli O157:H7 # 1 281 1 281 281 533 100.0 1e-151 MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTA GVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHH IVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAP LLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP IVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL >gi|223713506|gb|ACDM01000092.1| GENE 41 49249 - 50757 1946 502 aa, chain + ## HITS:1 COG:ECs4851 KEGG:ns NR:ns ## COG: ECs4851 COG0554 # Protein_GI_number: 15834105 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Escherichia coli O157:H7 # 1 502 1 502 502 1023 100.0 0 MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSST LVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDG LEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVH VTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPI SGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVN YALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPY ARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLM QFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTER NYRYAGWKKAVKRAMAWEEHDE >gi|223713506|gb|ACDM01000092.1| GENE 42 50763 - 51902 1357 379 aa, chain + ## HITS:1 COG:glpX KEGG:ns NR:ns ## COG: glpX COG1494 # Protein_GI_number: 16131763 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Escherichia coli K12 # 44 379 1 336 336 634 100.0 0 MPNEAFMPHPVVPKRAGATPHTSIIPPFPCATLRAIPYCLEFAMRRELAIEFSRVTESAA LAGYKWLGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRG DAVDIAVDPIEGTRMTAMGQANALAVLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNL PLADNLRNVAAALGKPLSELTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCM PDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCK AMGIEAGKVLRLGDMARSDNVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRR IQSIHYLDRKDPEMQVHIL >gi|223713506|gb|ACDM01000092.1| GENE 43 51999 - 52745 885 248 aa, chain + ## HITS:1 COG:fpr KEGG:ns NR:ns ## COG: fpr COG1018 # Protein_GI_number: 16131762 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 248 1 248 248 505 100.0 1e-143 MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN PDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGP YLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS LTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPG HMTAEHYW >gi|223713506|gb|ACDM01000092.1| GENE 44 52750 - 53178 435 142 aa, chain - ## HITS:1 COG:yiiT KEGG:ns NR:ns ## COG: yiiT COG0589 # Protein_GI_number: 16131761 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli K12 # 1 142 1 142 142 280 100.0 4e-76 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQ LLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM PAYRGMINKMSADLLIVPFIDK >gi|223713506|gb|ACDM01000092.1| GENE 45 53205 - 53504 328 99 aa, chain - ## HITS:1 COG:yiiS KEGG:ns NR:ns ## COG: yiiS COG3691 # Protein_GI_number: 16131760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 99 1 99 99 161 100.0 3e-40 MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAATSSADEG ASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA >gi|223713506|gb|ACDM01000092.1| GENE 46 53716 - 54156 468 146 aa, chain - ## HITS:1 COG:ECs4846 KEGG:ns NR:ns ## COG: ECs4846 COG3152 # Protein_GI_number: 15834100 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 146 1 146 146 260 100.0 6e-70 MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF VGTQGENKYGKDTQDVKYKADNKSSN >gi|223713506|gb|ACDM01000092.1| GENE 47 54257 - 54856 549 199 aa, chain + ## HITS:1 COG:no KEGG:EcolC_4098 NR:ns ## KEGG: EcolC_4098 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 199 1 199 199 350 100.0 2e-95 MKPGCTLFFLLCSALTVTTAAHAQTPDTATTAPYLLAGAPTFDLSISQFREDFNSQNPSL PLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIKSIQMTWLPIQGPEQKAAK AKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYYTETEGALRYVVADNGEKGLT FAVEPIKLALSESLEGLNK >gi|223713506|gb|ACDM01000092.1| GENE 48 54964 - 55731 939 255 aa, chain + ## HITS:1 COG:ECs4844 KEGG:ns NR:ns ## COG: ECs4844 COG0149 # Protein_GI_number: 15834098 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Escherichia coli O157:H7 # 1 255 1 255 255 454 100.0 1e-128 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM LGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP AQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD AFAVIVKAAEAAKQA >gi|223713506|gb|ACDM01000092.1| GENE 49 55786 - 56541 574 251 aa, chain - ## HITS:1 COG:cdh KEGG:ns NR:ns ## COG: cdh COG2134 # Protein_GI_number: 16131756 # Func_class: I Lipid transport and metabolism # Function: CDP-diacylglycerol pyrophosphatase # Organism: Escherichia coli K12 # 1 251 1 251 251 515 100.0 1e-146 MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLPNQQQNQNPSPCAEVKP NAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVP DRAVSLAINSRTGRTQNHFHIHISCIRPDVRKQLDNNLANISSRWLPLPGGLRGHEYLAR RVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQSDNSFVLLATQRNLLTLNRASAE EIQDHQCEILR >gi|223713506|gb|ACDM01000092.1| GENE 50 56648 - 57637 1199 329 aa, chain - ## HITS:1 COG:sbp KEGG:ns NR:ns ## COG: sbp COG1613 # Protein_GI_number: 16131755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 329 1 329 329 649 100.0 0 MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQS HGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLV RKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRA LYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEP TVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLF TIDEEFGGWTKAQKEHFANGGTFDQISKR >gi|223713506|gb|ACDM01000092.1| GENE 51 57957 - 58919 1243 320 aa, chain - ## HITS:1 COG:ECs4841 KEGG:ns NR:ns ## COG: ECs4841 COG0205 # Protein_GI_number: 15834095 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Escherichia coli O157:H7 # 1 320 1 320 320 634 100.0 0 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSD MINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPC IGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLA AAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETG RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDA IENMKRPFKGDWLDCAKKLY >gi|223713506|gb|ACDM01000092.1| GENE 52 59100 - 60002 485 300 aa, chain - ## HITS:1 COG:ECs4840 KEGG:ns NR:ns ## COG: ECs4840 COG0053 # Protein_GI_number: 15834094 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Escherichia coli O157:H7 # 1 300 1 300 300 558 100.0 1e-159 MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVV RYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIV TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADA LFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSVVPREGKRSMLS >gi|223713506|gb|ACDM01000092.1| GENE 53 60151 - 60651 265 166 aa, chain - ## HITS:1 COG:ECs4839 KEGG:ns NR:ns ## COG: ECs4839 COG3678 # Protein_GI_number: 15834093 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli O157:H7 # 1 151 2 152 167 211 100.0 5e-55 MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMR DLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQM YRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSSSNSRSQ >gi|223713506|gb|ACDM01000092.1| GENE 54 60801 - 61499 889 232 aa, chain + ## HITS:1 COG:ECs4838 KEGG:ns NR:ns ## COG: ECs4838 COG0745 # Protein_GI_number: 15834092 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 232 1 232 232 410 100.0 1e-114 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS >gi|223713506|gb|ACDM01000092.1| GENE 55 61496 - 62869 1548 457 aa, chain + ## HITS:1 COG:ECs4837 KEGG:ns NR:ns ## COG: ECs4837 COG0642 # Protein_GI_number: 15834091 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1 457 1 457 457 816 100.0 0 MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELAND PPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQK KKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLL WLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQ RLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQK NALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRN ALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLG LAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS >gi|223713506|gb|ACDM01000092.1| GENE 56 62975 - 63649 522 224 aa, chain - ## HITS:1 COG:yiiM KEGG:ns NR:ns ## COG: yiiM COG2258 # Protein_GI_number: 16131750 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 224 11 234 234 462 100.0 1e-130 MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVHGGPDRALCHY PREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPC YKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWH MPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK >gi|223713506|gb|ACDM01000092.1| GENE 57 63798 - 64787 1025 329 aa, chain - ## HITS:1 COG:no KEGG:ECSE_4198 NR:ns ## KEGG: ECSE_4198 # Name: not_defined # Def: 2-keto-3-deoxygluconate permease # Organism: E.coli_SE11 # Pathway: not_defined # 1 329 13 341 341 500 99.0 1e-140 MEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCM GASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAM DMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPF LVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTG IPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVT SILVPILTSIWSRKVKARAAKIEILGTVK >gi|223713506|gb|ACDM01000092.1| GENE 58 65041 - 65661 571 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 206 1 201 201 224 53 1e-57 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITK LDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKA AASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQN RRPDYIKEFWNVVNWDEAAARFAAKK >gi|223713506|gb|ACDM01000092.1| GENE 59 65946 - 66980 1296 344 aa, chain + ## HITS:1 COG:rhaT KEGG:ns NR:ns ## COG: rhaT COG0697 # Protein_GI_number: 16131747 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 344 1 344 344 606 99.0 1e-173 MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPN FWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPI INGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVM CGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVK DLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYV LCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN >gi|223713506|gb|ACDM01000092.1| GENE 60 66977 - 67825 669 282 aa, chain - ## HITS:1 COG:rhaR KEGG:ns NR:ns ## COG: rhaR COG2207 # Protein_GI_number: 16131746 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 282 31 312 312 578 99.0 1e-165 MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRI TRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWRLGS MGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDK LITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHS RLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD >gi|223713506|gb|ACDM01000092.1| GENE 61 67817 - 67951 95 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRHRGYLGQRTKLIIRNMAYKYVEKIRVIAESHPVPGEYHAVTS >gi|223713506|gb|ACDM01000092.1| GENE 62 67899 - 68735 416 278 aa, chain - ## HITS:1 COG:rhaS KEGG:ns NR:ns ## COG: rhaS COG2207 # Protein_GI_number: 16131745 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 278 1 278 278 527 99.0 1e-150 MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGG TVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSV LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLCKSSLQENLENSASRLNLLLAWL EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT DIAYRYGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ >gi|223713506|gb|ACDM01000092.1| GENE 63 69023 - 70492 1327 489 aa, chain + ## HITS:1 COG:rhaB KEGG:ns NR:ns ## COG: rhaB COG1070 # Protein_GI_number: 16131744 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 489 1 489 489 1009 99.0 0 MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTRDVDSLESAI RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGK RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL WLLQRVLQEQQINDLPALISATQALPACRFIINPNDDRFINPETMCSEIQAACRETAQPI PESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS TRQTKELCA >gi|223713506|gb|ACDM01000092.1| GENE 64 70489 - 71748 1400 419 aa, chain + ## HITS:1 COG:rhaA KEGG:ns NR:ns ## COG: rhaA COG4806 # Protein_GI_number: 16131743 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Escherichia coli K12 # 1 419 1 419 419 856 99.0 0 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQ ATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRRG Prediction of potential genes in microbial genomes Time: Mon May 16 19:35:14 2011 Seq name: gi|223713505|gb|ACDM01000093.1| Escherichia sp. 4_1_40B cont1.93, whole genome shotgun sequence Length of sequence - 53810 bp Number of predicted genes - 50, with homology - 48 Number of transcription units - 27, operones - 13 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 1/1.000 + CDS 978 - 1292 401 ## COG3254 Uncharacterized conserved protein + Term 1301 - 1337 2.2 + Prom 1343 - 1402 5.1 3 2 Op 1 7/0.143 + CDS 1593 - 2039 374 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 4 2 Op 2 2/0.857 + CDS 2050 - 3501 1470 ## COG1299 Phosphotransferase system, fructose-specific IIC component 5 2 Op 3 3/0.571 + CDS 3491 - 4561 1107 ## COG1363 Cellulase M and related proteins 6 2 Op 4 . + CDS 4561 - 6309 1045 ## COG3711 Transcriptional antiterminator + Term 6313 - 6351 9.3 7 3 Tu 1 . - CDS 6359 - 7414 947 ## B21_03730 hypothetical protein - Prom 7497 - 7556 7.4 - Term 7512 - 7560 4.1 8 4 Tu 1 . - CDS 7567 - 8400 643 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity - Prom 8545 - 8604 4.4 + Prom 8318 - 8377 4.2 9 5 Op 1 5/0.286 + CDS 8594 - 9181 510 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 10 5 Op 2 16/0.000 + CDS 9230 - 11644 2854 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 11 5 Op 3 12/0.000 + CDS 11657 - 12559 886 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 12 5 Op 4 9/0.000 + CDS 12556 - 13191 536 ## COG2864 Cytochrome b subunit of formate dehydrogenase 13 5 Op 5 . + CDS 13188 - 14117 970 ## COG3058 Uncharacterized protein involved in formate dehydrogenase formation - Term 14285 - 14323 4.4 14 6 Op 1 . - CDS 14447 - 14689 142 ## SSON_4059 hypothetical protein - Prom 14817 - 14876 4.8 15 6 Op 2 . - CDS 14907 - 15125 128 ## SFV_3606 hypothetical protein - Prom 15300 - 15359 8.5 - Term 15421 - 15456 3.3 16 7 Tu 1 . - CDS 15460 - 15567 68 ## - Prom 15596 - 15655 3.0 - Term 15928 - 15977 5.1 17 8 Op 1 5/0.286 - CDS 15978 - 16919 1125 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 18 8 Op 2 7/0.143 - CDS 16964 - 17401 407 ## COG1490 D-Tyr-tRNAtyr deacylase 19 8 Op 3 2/0.857 - CDS 17398 - 18270 792 ## COG1295 Predicted membrane protein 20 8 Op 4 1/1.000 - CDS 18264 - 18863 784 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 18887 - 18946 2.1 21 9 Op 1 3/0.571 - CDS 18962 - 19747 548 ## COG1349 Transcriptional regulators of sugar metabolism 22 9 Op 2 . - CDS 19781 - 20677 564 ## COG0524 Sugar kinases, ribokinase family - Prom 20702 - 20761 4.1 23 10 Op 1 4/0.429 + CDS 20845 - 21741 980 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 24 10 Op 2 3/0.571 + CDS 21765 - 22643 1017 ## COG3684 Tagatose-1,6-bisphosphate aldolase 25 10 Op 3 2/0.857 + CDS 22660 - 23901 1261 ## COG2942 N-acyl-D-glucosamine 2-epimerase + Term 23991 - 24032 7.4 26 11 Tu 1 . + CDS 24039 - 24941 597 ## COG2017 Galactose mutarotase and related enzymes + Term 25038 - 25085 -0.7 + Prom 24996 - 25055 6.5 27 12 Op 1 3/0.571 + CDS 25140 - 27176 2003 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 28 12 Op 2 3/0.571 + CDS 27222 - 28607 1587 ## COG2211 Na+/melibiose symporter and related transporters 29 12 Op 3 . + CDS 28650 - 30053 1065 ## COG2211 Na+/melibiose symporter and related transporters 30 12 Op 4 . + CDS 30121 - 30813 525 ## JW3846 predicted outer membrane porin L + Term 30875 - 30911 4.8 - Term 30810 - 30852 3.5 31 13 Tu 1 . - CDS 30904 - 32169 1011 ## COG0477 Permeases of the major facilitator superfamily - Prom 32207 - 32266 2.3 32 14 Op 1 . - CDS 32271 - 33251 775 ## JW3844 predicted sugar phosphate isomerase 33 14 Op 2 2/0.857 - CDS 33259 - 33969 572 ## COG2188 Transcriptional regulators - Prom 34098 - 34157 7.3 - Term 34133 - 34162 2.1 34 15 Tu 1 . - CDS 34186 - 36009 2287 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 36244 - 36303 5.8 35 16 Tu 1 5/0.286 + CDS 36382 - 37791 1660 ## COG0174 Glutamine synthetase + Term 37965 - 37994 -0.3 + Prom 37987 - 38046 5.2 36 17 Op 1 14/0.000 + CDS 38077 - 39126 1088 ## COG3852 Signal transduction histidine kinase, nitrogen specific 37 17 Op 2 . + CDS 39138 - 40547 1537 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains + Prom 40579 - 40638 2.9 38 18 Tu 1 . + CDS 40659 - 40769 88 ## - Term 40806 - 40871 16.8 39 19 Op 1 2/0.857 - CDS 40998 - 42371 1572 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 42472 - 42531 2.1 40 19 Op 2 . - CDS 42560 - 43069 574 ## COG3078 Uncharacterized protein conserved in bacteria - Prom 43109 - 43168 3.9 + Prom 43453 - 43512 5.1 41 20 Tu 1 . + CDS 43687 - 44283 690 ## COG0218 Predicted GTPase - Term 44404 - 44441 9.4 42 21 Tu 1 . - CDS 44664 - 47450 3298 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 47680 - 47739 4.5 43 22 Tu 1 . + CDS 47509 - 47694 56 ## EcE24377A_4381 hypothetical protein + Term 47792 - 47820 -1.0 + Prom 47730 - 47789 4.5 44 23 Tu 1 . + CDS 47841 - 48746 598 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 48750 - 48793 10.0 45 24 Tu 1 1/1.000 - CDS 48787 - 50217 1056 ## COG5339 Uncharacterized protein conserved in bacteria - Prom 50311 - 50370 10.4 - Term 50312 - 50359 5.1 46 25 Op 1 5/0.286 - CDS 50372 - 50998 820 ## COG0526 Thiol-disulfide isomerase and thioredoxins 47 25 Op 2 5/0.286 - CDS 51015 - 51953 631 ## COG2334 Putative homoserine kinase type II (protein kinase fold) - Prom 52010 - 52069 1.6 48 26 Tu 1 . - CDS 52078 - 52347 397 ## COG3084 Uncharacterized protein conserved in bacteria - Prom 52586 - 52645 1.9 + Prom 52333 - 52392 2.9 49 27 Op 1 11/0.000 + CDS 52417 - 53001 398 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 50 27 Op 2 . + CDS 52983 - 53510 460 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein + Term 53521 - 53565 3.2 Predicted protein(s) >gi|223713505|gb|ACDM01000093.1| GENE 1 144 - 968 874 274 aa, chain + ## HITS:1 COG:rhaD KEGG:ns NR:ns ## COG: rhaD COG0235 # Protein_GI_number: 16131742 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 274 1 274 274 573 100.0 1e-163 MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQ PMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPA HFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGV GILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVK VYSMGGMKQTISREELIALGKRFGVTPLASALAL >gi|223713505|gb|ACDM01000093.1| GENE 2 978 - 1292 401 104 aa, chain + ## HITS:1 COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 104 1 104 104 199 100.0 8e-52 MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIES EERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQEVFYLP >gi|223713505|gb|ACDM01000093.1| GENE 3 1593 - 2039 374 148 aa, chain + ## HITS:1 COG:frvA KEGG:ns NR:ns ## COG: frvA COG1762 # Protein_GI_number: 16131740 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1 148 1 148 148 292 100.0 2e-79 MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGV AVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGVPQSGEEDQVKIIGTLCRK IIHKEFIHQLQQGDTDQVLALLNQTLSS >gi|223713505|gb|ACDM01000093.1| GENE 4 2050 - 3501 1470 483 aa, chain + ## HITS:1 COG:frvB_2 KEGG:ns NR:ns ## COG: frvB_2 COG1299 # Protein_GI_number: 16131739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 129 483 1 355 355 629 100.0 1e-180 MEPSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAA DYVILATGRGLSGDDRARFAGKKVYEIAISQALKNIDQIFSELPTNSQLFAADSGVKLGK QEVQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFGLPYTDMSKGAPSFTWVVESI GYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLANDKALLGTQSGAGFLGAVVLGLAI GYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTYYVIGPVMSDLMGGLLHFLNTIP PSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSLLEKHIYDWYAIVGVVALMPPVAAGLA TFIAPKLFTRQEKEAASSAIVVGATVATEPAIPYALAAPLPMITANTLAGGITGVLVIAF GIKRLAPGLGIFDPLIGLMSPVGSFYLVLAIGLALNISFIIVLKGLWLRRKAKAAQQELV HEH >gi|223713505|gb|ACDM01000093.1| GENE 5 3491 - 4561 1107 356 aa, chain + ## HITS:1 COG:frvX KEGG:ns NR:ns ## COG: frvX COG1363 # Protein_GI_number: 16131738 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1 356 1 356 356 738 100.0 0 MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGSFVARKGNKGPKVAVVG HMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTE KQKQQPLSFDEMFIDIGANSREEVEKRGVEIGNFISPEANFACWGEDKVVGKALDNRIGC AMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVIVLDTAVAGDVPGIDN IKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMG GGRPVVALCLPTRYLHANSGMISKADYEALLTLIRGFLTTLTAEKVNAFSQFRQVD >gi|223713505|gb|ACDM01000093.1| GENE 6 4561 - 6309 1045 582 aa, chain + ## HITS:1 COG:frvR_1 KEGG:ns NR:ns ## COG: frvR_1 COG3711 # Protein_GI_number: 16131737 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli K12 # 1 463 1 463 463 910 100.0 0 MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFTLNGKARIFASGSAGYQ LEIFERRSFFQLLQKHDNDDRLLALLLLNTFTPRAQLASALNLPETWVAERLPRLKQRYE RTCCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLAGITRDNLQHLSTACDNQHRW PLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIVEHSGLFLGDNAVRTLTGLIEKQ HQQAQVISADNVQGLLQRVPGIASLNIIDAQLVENITGHLLRCLAAPVWIAEHRQSSMNN LKAAWPAAFDMSLHFITLLREQLDIPLFDSDLIGLYFACALERHQNERQPIILLSDQNAI ATINQLAIERDVLNCRVIIARSLSELVAIREEIEPLLIINNSHYLLDDAVNNYITVKNII TAAGIEQIKHFLATAFIRQQPERFFSAPGSFHYSNVRGESWQHITRQICAQLVAQHHITA DEAQRIIAREGEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPVEVNNEVINHVLIACA AADARHELKIFSYLASILCQHPAEIIAGLTGYEAFMELLHKG >gi|223713505|gb|ACDM01000093.1| GENE 7 6359 - 7414 947 351 aa, chain - ## HITS:1 COG:no KEGG:B21_03730 NR:ns ## KEGG: B21_03730 # Name: yiiG # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 351 1 351 351 631 100.0 1e-179 MKRNLLSSAIIVAIMSLGLTGCDDKKAETETLPPANSQPAAPAPEAKPTEAPVAKAEAKP ETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYADWLKDFKQGPTGEERTVYGI YGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNTINEMDKYYTQENYKD DAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAELKNIEEREGKTFHYYSLA VMISAKQINNLISQDKFDAEAAMKKVSELETLVAQAKEADKGGMNFSFINSAGQYQLEAK KYVRRIRDKVPYSDWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR >gi|223713505|gb|ACDM01000093.1| GENE 8 7567 - 8400 643 277 aa, chain - ## HITS:1 COG:fdhD KEGG:ns NR:ns ## COG: fdhD COG1526 # Protein_GI_number: 16131735 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Escherichia coli K12 # 1 277 1 277 277 572 100.0 1e-163 MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPK DLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTG CGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGQLTGCTHAAAWMLPSG ELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVS AATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN >gi|223713505|gb|ACDM01000093.1| GENE 9 8594 - 9181 510 195 aa, chain + ## HITS:1 COG:fdoG KEGG:ns NR:ns ## COG: fdoG COG0243 # Protein_GI_number: 16131734 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 195 1 195 1016 412 100.0 1e-115 MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTRETRNTCTYCSVGCGLL MYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKFPEYRAPGSDK WQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCASASSNETGYLTQKF SRALGMLAVDNQARV >gi|223713505|gb|ACDM01000093.1| GENE 10 9230 - 11644 2854 804 aa, chain + ## HITS:1 COG:fdoG KEGG:ns NR:ns ## COG: fdoG COG0243 # Protein_GI_number: 16131734 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 804 213 1016 1016 1684 100.0 0 MTNHWVDIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYY APIRSGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRK YDKSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ GLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAF FGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGC LSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRW LQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNYAIPHEPSSEE VAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIFAGSWTPEGNQMA RRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQLLKWDGTKWTGWDIP DYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFETPLGTNPLHPNVISNPA ARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAILQPEQFVEIGESLANKLG IAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIGIPIHWGYEGVAKKGFIANTL TPFVGDANTQTPEFKSFLVNVEKV >gi|223713505|gb|ACDM01000093.1| GENE 11 11657 - 12559 886 300 aa, chain + ## HITS:1 COG:fdoH KEGG:ns NR:ns ## COG: fdoH COG0437 # Protein_GI_number: 16131733 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 300 1 300 300 630 100.0 1e-180 MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKACQVACSEWNDIRDTVG NNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCSDPGCLKACPAEGAIIQ YANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCP TGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAGVGGTHVMYVLHHADKPNLYHGL PENPEISETVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRADEEENNLHEEKDEERK >gi|223713505|gb|ACDM01000093.1| GENE 12 12556 - 13191 536 211 aa, chain + ## HITS:1 COG:ECs4818 KEGG:ns NR:ns ## COG: ECs4818 COG2864 # Protein_GI_number: 15834072 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 211 1 211 211 390 100.0 1e-108 MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLMQIMGTPQLARILHPFV GVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAII FLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKGTITA MVEGWVTSAWAKKHHPRWYREVRKTTEKKAE >gi|223713505|gb|ACDM01000093.1| GENE 13 13188 - 14117 970 309 aa, chain + ## HITS:1 COG:fdhE KEGG:ns NR:ns ## COG: fdhE COG3058 # Protein_GI_number: 16131731 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in formate dehydrogenase formation # Organism: Escherichia coli K12 # 1 309 1 309 309 618 100.0 1e-177 MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALI AHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKHWQKLLMALIAELKPEMSG PALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKAR AEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSGKLHY WSLDDEQAAIKAESCDDCDTYLKILYQEKDPKIEAVADDLASLVLDARMEQEGYARSSIN PFLFPGEGE >gi|223713505|gb|ACDM01000093.1| GENE 14 14447 - 14689 142 80 aa, chain - ## HITS:1 COG:no KEGG:SSON_4059 NR:ns ## KEGG: SSON_4059 # Name: yiiF # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 80 1 80 80 143 100.0 2e-33 MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPG IWQGCEEDGVEYQRKLREEW >gi|223713505|gb|ACDM01000093.1| GENE 15 14907 - 15125 128 72 aa, chain - ## HITS:1 COG:no KEGG:SFV_3606 NR:ns ## KEGG: SFV_3606 # Name: yiiE # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1 72 49 120 120 133 100.0 2e-30 MAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV VGVDDQCKEHKE >gi|223713505|gb|ACDM01000093.1| GENE 16 15460 - 15567 68 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVANINLIKQESYSVVNLEKQLSRTVTNKIITMSK >gi|223713505|gb|ACDM01000093.1| GENE 17 15978 - 16919 1125 313 aa, chain - ## HITS:1 COG:ECs4811 KEGG:ns NR:ns ## COG: ECs4811 COG0454 # Protein_GI_number: 15834065 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 1 313 17 329 329 625 100.0 1e-179 MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGR LYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKL GFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQ QYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHI RYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAK PFGPYEEGGNEEE >gi|223713505|gb|ACDM01000093.1| GENE 18 16964 - 17401 407 145 aa, chain - ## HITS:1 COG:ECs4810 KEGG:ns NR:ns ## COG: ECs4810 COG1490 # Protein_GI_number: 15834064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Escherichia coli O157:H7 # 1 145 1 145 145 276 100.0 8e-75 MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEG KMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNT QTGRFAADMQVSLVNDGPVTFWLQV >gi|223713505|gb|ACDM01000093.1| GENE 19 17398 - 18270 792 290 aa, chain - ## HITS:1 COG:ECs4809 KEGG:ns NR:ns ## COG: ECs4809 COG1295 # Protein_GI_number: 15834063 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 290 1 290 290 528 100.0 1e-150 MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLVAVVFALFAA FPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYSI DSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNV LRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAALLFEAGKKGFALYITMFPSYQL IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEDDEP >gi|223713505|gb|ACDM01000093.1| GENE 20 18264 - 18863 784 199 aa, chain - ## HITS:1 COG:yihX KEGG:ns NR:ns ## COG: yihX COG1011 # Protein_GI_number: 16131725 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1 199 8 206 206 414 100.0 1e-116 MLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEA LCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE YPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGIT SILVKDKTTIPDYFAKVLC >gi|223713505|gb|ACDM01000093.1| GENE 21 18962 - 19747 548 261 aa, chain - ## HITS:1 COG:ECs4807 KEGG:ns NR:ns ## COG: ECs4807 COG1349 # Protein_GI_number: 15834061 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 261 9 269 269 486 100.0 1e-137 MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGG AGRASSVVNTAFEQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNH LRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAI ESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP AALKSRLQDSQIEIILPQEDA >gi|223713505|gb|ACDM01000093.1| GENE 22 19781 - 20677 564 298 aa, chain - ## HITS:1 COG:yihV KEGG:ns NR:ns ## COG: yihV COG0524 # Protein_GI_number: 16131723 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 298 3 300 300 572 100.0 1e-163 MIRVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGR VGDDDTGNSLLAELESWGVNTRYTKRYNQAKSSQSAIMVDTKGERIIINYPSPDLLPDAE WLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSDHAAF SEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTT GAGDVFHGALAVALATSGDLAESVRFASGVAALKCTRPGGRAGIPDCDQTRSFLSLFV >gi|223713505|gb|ACDM01000093.1| GENE 23 20845 - 21741 980 298 aa, chain + ## HITS:1 COG:yihU KEGG:ns NR:ns ## COG: yihU COG2084 # Protein_GI_number: 16131722 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli K12 # 1 298 1 298 298 542 100.0 1e-154 MAAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEF IITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVP VGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIA LNALSAEAAVLCEALNLPFDVAVKVMSGTAAGKGHFTTSWPNKVLSGDLSPAFMIDLAHK DLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGMTAKVKM >gi|223713505|gb|ACDM01000093.1| GENE 24 21765 - 22643 1017 292 aa, chain + ## HITS:1 COG:yihT KEGG:ns NR:ns ## COG: yihT COG3684 # Protein_GI_number: 16131721 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Escherichia coli K12 # 1 292 1 292 292 556 100.0 1e-158 MNKYTINDITRASGGFAMLAVDQREAMRMMFAAAGAPAPVADSVLTDFKVNAAKALSPYA SAILVDQQFCYRQVVEQNAIAKSCAMIVAADEFIPGNGIPVDSVVIDRKINPLQIKQDGG KALKLLVLWRSDEDAQQRLDMVKEFNELCHSHGLVSIIEPVVRPPRRGDKFDREQAIIDA AKELGDSGADLYKVEMPLYGKGPQQELLCASQRLNDHINMPWVILSSGVDEKLFPRAVRV AMTAGASGFLAGRAVWASVVGLPDNELMLRDVCAPKLQQLGDIVDEMMAKRR >gi|223713505|gb|ACDM01000093.1| GENE 25 22660 - 23901 1261 413 aa, chain + ## HITS:1 COG:yihS KEGG:ns NR:ns ## COG: yihS COG2942 # Protein_GI_number: 16131720 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Escherichia coli K12 # 1 413 6 418 418 836 100.0 0 MKWFNTLSHNRWLEQETDRIFDFGKNSVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVY SVAAAMGRPGAYSLVDHGIKAMNGALRDKKYGGWYACVNDEGVVDASKQGYQHFFALLGA ASAVTTGHPEARKLLDYTIEIIEKYFWSEEEQMCLESWDEAFSKTEEYRGGNANMHAVEA FLIVYDVTHDKKWLDRAIRVASVIIHDVARNNHYRVNEHFDTQWNPLPDYNKDNPAHRFR AFGGTPGHWIEWGRLMLHIHAALEARCEQPPAWLLEDAKGLFNATVRDAWAPDGADGIVY TVDWEGKPVVRERVRWPIVEAMGTAYALYTVTGDRQYETWYQTWWEYCIKYLMDYENGSW WQELDADNKVTTKVWDGKQDIYHLLHCLVIPRIPLAPGMAPAVAAGLLDINAK >gi|223713505|gb|ACDM01000093.1| GENE 26 24039 - 24941 597 300 aa, chain + ## HITS:1 COG:yihR KEGG:ns NR:ns ## COG: yihR COG2017 # Protein_GI_number: 16131719 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 1 300 9 308 308 612 100.0 1e-175 MQITNMHCSGQTVSLAAGDYHATIVTVGAGLAELTFQGCHLVIPHKPEEMPLAHLGKVLI PWPNRIANGCYRYQGQEYQLPINEHSSKAAIHGLLAWRDWQISELTATSVTLTAFLPPSY GYPFMLASQVVYSLNAHTGLSVEIASQNIGTVAAPYGVGIHPYLTCNLTSVDEYLFQLPA NQVYAVDEHANPTTLHHVDELDLNFTQAKKIAATKIDHTFKTANDLWEMTITHPQQALSV SLCSDQLWVQVYSGEKLQRQGLAVEPMSCPPNAFNSGIDLLLLESGKPHRLFFNIYGQRK >gi|223713505|gb|ACDM01000093.1| GENE 27 25140 - 27176 2003 678 aa, chain + ## HITS:1 COG:yihQ KEGG:ns NR:ns ## COG: yihQ COG1501 # Protein_GI_number: 16131718 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Escherichia coli K12 # 1 678 1 678 678 1418 100.0 0 MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHSKDNPCLWIGSGIADIDMFRGNFSIKDK LQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLR LAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWT FFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK RVMWNWKWNSENYPQLDSRIKQWNQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASG GDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV SAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGN RPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHT YTLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPV FYRADSEWAALFASLKSI >gi|223713505|gb|ACDM01000093.1| GENE 28 27222 - 28607 1587 461 aa, chain + ## HITS:1 COG:yihP KEGG:ns NR:ns ## COG: yihP COG2211 # Protein_GI_number: 16131717 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1 461 8 468 468 883 100.0 0 MSHITTEDPATLRLPFKEKLSYGIGDLASNILLDIGTLYLLKFYTDVLGLPGTYGGIIFL ISKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFILYASFPVTLLAIANFVGTPFDVTGKTV MATILFMLYGLFFSMMNCSYGAMVPAITKNPNERASLAAWRQGGATLGLLLCTVGFVPVM NLIEGNQQLGYIFAATLFSLFGLLFMWICYSGVKERYVETQPANPAQKPGLLQSFRAIAG NRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSYMGFFSMGCIFIGVFLMPAS VRRFGKKKVYIGGLLIWVLGDLLNYFFGGGSVSFVAFSCLAFFGSAFVNSLNWALVSDTV EYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGYVPNVAQADHTIEGLRQL IFIYPSALAVVTIVAMGCFYSLNEKMYVRIVEEIEARKRTA >gi|223713505|gb|ACDM01000093.1| GENE 29 28650 - 30053 1065 467 aa, chain + ## HITS:1 COG:yihO KEGG:ns NR:ns ## COG: yihO COG2211 # Protein_GI_number: 16131716 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli K12 # 1 463 3 465 487 892 99.0 0 MSDHNPLTLKLNLREKIAYGMGDVGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAK FFTAFTDMLTGFLLDSRKNIGPKGKFRPFILYAAVPAALIATLQFIATTFCLPVKTTIAT ALFMMFGLSYSLMNCSYGAMIPAITKNPNERAQLAAYRQGGATIGLLICTVAFIPLQSLF SDSTVGYACAALMFSIGGFIFMMLCYRGVKEHYVDTTPTGHKASILKSFCAIFRNPPLLV LCIANLCTLAAFNIKLAIQVYYTQYVLNDINLLSWMGFFSMGCILIGVLLVPLTVKCFGK KQVYLAGMVLWAVGDILNYFWGSNSFTFVMFSCVAFFGTAFVNSLNWALVPDTVDYGEWK TGIRAEGSVYTGYTFFRKISAALAGFLPGIMLTQIGYVPNIAQSDATLQGLRQLIFIWPC ALAIIAALTMGFFYTLNEKRFALIIEEINQRKNKEMATEEKTASVTL >gi|223713505|gb|ACDM01000093.1| GENE 30 30121 - 30813 525 230 aa, chain + ## HITS:1 COG:no KEGG:JW3846 NR:ns ## KEGG: JW3846 # Name: ompL # Def: predicted outer membrane porin L # Organism: E.coli_J # Pathway: not_defined # 1 230 1 230 230 442 100.0 1e-123 MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYN FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNL TVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFMRVNDFNSSNG KDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF >gi|223713505|gb|ACDM01000093.1| GENE 31 30904 - 32169 1011 421 aa, chain - ## HITS:1 COG:yihN KEGG:ns NR:ns ## COG: yihN COG0477 # Protein_GI_number: 16131714 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 421 1 421 421 774 100.0 0 MLTKKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLTNGQIGNAMSVNSFVTTVGF FLSIYFADKLPRRYTMSFSLIATGLLGVYLTTMPGYWGILFVWALFGVTCDMMNWPVLLK SVSRLGNSEQQGRLFGFFETGRGIVDTVVAFSALAVFTWFGSGLLGFKAGIWFYSLIVIA VGIIIFFVLNDKEEAPSVEVKKEDGASKNTSMTSVLKDKTIWLIAFNVFFVYAVYCGLTF FIPFLKNIYLLPVALVGAYGIINQYCLKMIGGPIGGMISDKILKSPSKYLCYTFIISTAA LVLLIMLPHESMPVYLGMACTLGFGAIVFTQRAVFFAPIGEAKIAENKTGAAMALGSFIG YAPAMFCFSLYGYILDLNPGIIGYKIVFGIMACFAFSGAVVSVMLVKRISQRKKEMLAAE A >gi|223713505|gb|ACDM01000093.1| GENE 32 32271 - 33251 775 326 aa, chain - ## HITS:1 COG:no KEGG:JW3844 NR:ns ## KEGG: JW3844 # Name: yihM # Def: predicted sugar phosphate isomerase # Organism: E.coli_J # Pathway: not_defined # 1 326 1 326 326 635 100.0 0 MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE DAINQINHVRNVLQQIKQEANHLLNH >gi|223713505|gb|ACDM01000093.1| GENE 33 33259 - 33969 572 236 aa, chain - ## HITS:1 COG:ECs4794 KEGG:ns NR:ns ## COG: ECs4794 COG2188 # Protein_GI_number: 15834048 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 236 1 236 236 475 100.0 1e-134 MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKI FRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKNRTSDIPETLAPLIAVT PSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKL IFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL >gi|223713505|gb|ACDM01000093.1| GENE 34 34186 - 36009 2287 607 aa, chain - ## HITS:1 COG:ECs4793 KEGG:ns NR:ns ## COG: ECs4793 COG1217 # Protein_GI_number: 15834047 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Escherichia coli O157:H7 # 1 607 1 607 607 1205 100.0 0 MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKN TAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYG LKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMA EDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPAL SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG RGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALG ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG KKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRA NRAPKDD >gi|223713505|gb|ACDM01000093.1| GENE 35 36382 - 37791 1660 469 aa, chain + ## HITS:1 COG:ECs4792 KEGG:ns NR:ns ## COG: ECs4792 COG0174 # Protein_GI_number: 15834046 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Escherichia coli O157:H7 # 1 469 1 469 469 961 100.0 0 MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRSTG IADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWNSSTQYEGGNKGHRPAVKGGY FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIG GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVSSPKARRIEVR FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN ELDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV >gi|223713505|gb|ACDM01000093.1| GENE 36 38077 - 39126 1088 349 aa, chain + ## HITS:1 COG:ECs4791 KEGG:ns NR:ns ## COG: ECs4791 COG3852 # Protein_GI_number: 15834045 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrogen specific # Organism: Escherichia coli O157:H7 # 1 349 1 349 349 659 100.0 0 MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS LNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQE QLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRN LVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQ VLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL FYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK >gi|223713505|gb|ACDM01000093.1| GENE 37 39138 - 40547 1537 469 aa, chain + ## HITS:1 COG:ECs4790 KEGG:ns NR:ns ## COG: ECs4790 COG2204 # Protein_GI_number: 15834044 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli O157:H7 # 1 469 1 469 469 915 100.0 0 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME >gi|223713505|gb|ACDM01000093.1| GENE 38 40659 - 40769 88 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS >gi|223713505|gb|ACDM01000093.1| GENE 39 40998 - 42371 1572 457 aa, chain - ## HITS:1 COG:ECs4789 KEGG:ns NR:ns ## COG: ECs4789 COG0635 # Protein_GI_number: 15834043 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 1 457 3 459 459 940 100.0 0 MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIP FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK AQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR LVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVF NYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVA QREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRG IALTRDDCIRRDVIKSLICNFRLDYAPIEKQWDLHFADYFAEDLKLLAPLAKDGLVDVDE KGIQVTAKGRLLIRNICMCFDTYLRQKARMQQFSRVI >gi|223713505|gb|ACDM01000093.1| GENE 40 42560 - 43069 574 169 aa, chain - ## HITS:1 COG:yihI KEGG:ns NR:ns ## COG: yihI COG3078 # Protein_GI_number: 16131706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 169 1 169 169 211 100.0 8e-55 MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNA PKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGET LSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN >gi|223713505|gb|ACDM01000093.1| GENE 41 43687 - 44283 690 198 aa, chain + ## HITS:1 COG:ECs4787 KEGG:ns NR:ns ## COG: ECs4787 COG0218 # Protein_GI_number: 15834041 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1 198 13 210 210 374 99.0 1e-104 MSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQK LDTWFSEMQPVEETQDGE >gi|223713505|gb|ACDM01000093.1| GENE 42 44664 - 47450 3298 928 aa, chain - ## HITS:1 COG:polA_2 KEGG:ns NR:ns ## COG: polA_2 COG0749 # Protein_GI_number: 16131704 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Escherichia coli K12 # 289 928 1 640 640 1231 100.0 0 MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAV VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK GAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDS LDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQN LKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKG KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRI ERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLK KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAE RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI HQLMENCTRLDVPLLVEVGSGENWDQAH >gi|223713505|gb|ACDM01000093.1| GENE 43 47509 - 47694 56 61 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_4381 NR:ns ## KEGG: EcE24377A_4381 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 61 20 80 80 101 98.0 7e-21 MSFSPLFVKIFCRSSGSLANRHVDNFVHKLFTSLLIYYHAFYSMMFVFVFHAVKNKSIPN N >gi|223713505|gb|ACDM01000093.1| GENE 44 47841 - 48746 598 301 aa, chain + ## HITS:1 COG:yihG KEGG:ns NR:ns ## COG: yihG COG0204 # Protein_GI_number: 16131703 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Escherichia coli K12 # 1 301 10 310 310 615 100.0 1e-176 MTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVKLLLPVPVIWRKVSRFCDFMMYCWCE GLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICNHRSWADIVVLCVLFRKHIPMNKYFLKQ QLAWVPFLGLACWSLDMPFMKRYSRAYLLRHPERRGKDVETTRRSCEKFRLHPTTIVNFV EGSRFTQEKHQQTHSTFQNLLPPKAAGIAMALNVLGKQFDKLLNVTLCYPDNNRQPFFDM LSGKLTRIVVHVDLQPIADELHGDYINDKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQN K >gi|223713505|gb|ACDM01000093.1| GENE 45 48787 - 50217 1056 476 aa, chain - ## HITS:1 COG:yihF KEGG:ns NR:ns ## COG: yihF COG5339 # Protein_GI_number: 16131702 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 476 15 490 490 922 99.0 0 MIRKSATGVIVALAVIWGGGTWYTGTQIQPGIEKFIKDFNDAKKKGEHAYDMTLSYQNFD KGFFNSRFQMQMTFDNGAPDLNIKPGQKVVFDVDVEHGPLPITMLMHGNVIPALAAAKVN LVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAPAEYGKFSFGEGQFTFNGDGS SLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLARLEEKKFPVGESESKFNQINIINHG EDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLTKGNQQLGSGEWSLIAESIDPSAVR QFIIQYNIAMQKQLAAHPELANDEVALQEVNAALFKEYLPLLQKSEPTIKQPVRWKNALG ELNANLDISIADPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKQA DKQISGMMTLGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH >gi|223713505|gb|ACDM01000093.1| GENE 46 50372 - 50998 820 208 aa, chain - ## HITS:1 COG:ECs4783 KEGG:ns NR:ns ## COG: ECs4783 COG0526 # Protein_GI_number: 15834037 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 208 1 208 208 410 100.0 1e-115 MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLH ISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQT IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQL NPQGMDTSNMDVFVQQYADTVKYLSEKK >gi|223713505|gb|ACDM01000093.1| GENE 47 51015 - 51953 631 312 aa, chain - ## HITS:1 COG:yihE KEGG:ns NR:ns ## COG: yihE COG2334 # Protein_GI_number: 16131700 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Escherichia coli K12 # 1 312 17 328 328 637 100.0 0 MDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQ LVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTG RKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVL RLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFS EFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKV LQEPPLQLTPMY >gi|223713505|gb|ACDM01000093.1| GENE 48 52078 - 52347 397 89 aa, chain - ## HITS:1 COG:ECs4781 KEGG:ns NR:ns ## COG: ECs4781 COG3084 # Protein_GI_number: 15834035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 89 1 89 89 158 100.0 3e-39 MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA KDAVIPGLQKDYEEDFKTALLRARGVIKE >gi|223713505|gb|ACDM01000093.1| GENE 49 52417 - 53001 398 194 aa, chain + ## HITS:1 COG:mobA KEGG:ns NR:ns ## COG: mobA COG0746 # Protein_GI_number: 16131698 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Escherichia coli K12 # 1 194 1 194 194 401 100.0 1e-112 MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEI YQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDA PVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMVFMRLAGGHAVDFSDHKDAFVN VNTPEELARWQEKR >gi|223713505|gb|ACDM01000093.1| GENE 50 52983 - 53510 460 175 aa, chain + ## HITS:1 COG:mobB KEGG:ns NR:ns ## COG: mobB COG1763 # Protein_GI_number: 16131697 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Escherichia coli K12 # 6 175 1 170 170 333 100.0 7e-92 MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYEL RKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVL FRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQNG Prediction of potential genes in microbial genomes Time: Mon May 16 19:36:10 2011 Seq name: gi|223713504|gb|ACDM01000094.1| Escherichia sp. 4_1_40B cont1.94, whole genome shotgun sequence Length of sequence - 88316 bp Number of predicted genes - 80, with homology - 80 Number of transcription units - 40, operones - 13 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 9 - 84 82.1 # Trp CCA 0 0 - Term 78 - 111 3.1 1 1 Tu 1 . - CDS 180 - 1019 598 ## COG0583 Transcriptional regulator - Prom 1044 - 1103 6.1 + Prom 1000 - 1059 6.9 2 2 Tu 1 . + CDS 1138 - 1476 458 ## COG3085 Uncharacterized protein conserved in bacteria - Term 1219 - 1252 -0.2 3 3 Tu 1 . - CDS 1501 - 3021 936 ## COG0606 Predicted ATPase with chaperone activity - Prom 3226 - 3285 6.9 4 4 Op 1 7/0.120 + CDS 3612 - 5258 1336 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 5 4 Op 2 5/0.440 + CDS 5255 - 5518 235 ## COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit 6 4 Op 3 5/0.440 + CDS 5538 - 6467 1184 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 7 4 Op 4 8/0.080 + CDS 6532 - 8382 2135 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 8 4 Op 5 . + CDS 8385 - 9929 1552 ## COG1171 Threonine dehydratase + Term 10022 - 10052 1.0 - Term 9926 - 9963 6.1 9 5 Tu 1 . - CDS 9981 - 10874 894 ## COG0583 Transcriptional regulator - Prom 10918 - 10977 4.4 + Prom 10911 - 10970 8.1 10 6 Tu 1 . + CDS 11024 - 12499 2142 ## COG0059 Ketol-acid reductoisomerase + Term 12556 - 12594 10.2 - Term 12542 - 12582 10.6 11 7 Tu 1 . - CDS 12586 - 12867 275 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 12895 - 12954 4.8 12 8 Tu 1 . - CDS 13296 - 13514 155 ## COG3692 Uncharacterized protein conserved in bacteria - Prom 13678 - 13737 1.8 + Prom 13645 - 13704 3.2 13 9 Tu 1 . + CDS 13731 - 15752 2308 ## COG0210 Superfamily I DNA and RNA helicases + Term 15816 - 15854 4.2 - Term 15745 - 15789 3.2 14 10 Tu 1 . - CDS 15799 - 17283 1608 ## COG0248 Exopolyphosphatase 15 11 Tu 1 . - CDS 17419 - 18684 1312 ## COG0513 Superfamily II DNA and RNA helicases - Prom 18820 - 18879 2.4 + Prom 18645 - 18704 4.6 16 12 Tu 1 . + CDS 18815 - 19144 508 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 19197 - 19230 0.2 + Prom 19230 - 19289 3.8 17 13 Op 1 . + CDS 19471 - 20730 1477 ## COG1158 Transcription termination factor 18 13 Op 2 . + CDS 20740 - 20958 183 ## ECO111_4609 hypothetical protein 19 13 Op 3 5/0.440 + CDS 20970 - 22073 890 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 20 13 Op 4 4/0.560 + CDS 22085 - 23131 1057 ## COG3765 Chain length determinant protein + Term 23142 - 23179 9.2 21 14 Op 1 10/0.040 + CDS 23187 - 24317 971 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 22 14 Op 2 4/0.560 + CDS 24314 - 25576 1230 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase 23 14 Op 3 16/0.000 + CDS 25576 - 26643 1196 ## COG1088 dTDP-D-glucose 4,6-dehydratase 24 14 Op 4 4/0.560 + CDS 26662 - 27543 947 ## COG1209 dTDP-glucose pyrophosphorylase 25 14 Op 5 4/0.560 + CDS 27521 - 28195 396 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 26 14 Op 6 6/0.120 + CDS 28200 - 29330 1262 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 27 14 Op 7 . + CDS 29332 - 30582 1270 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 28 14 Op 8 . + CDS 30579 - 31658 880 ## EcolC_4210 4-alpha-L-fucosyltransferase 29 14 Op 9 . + CDS 31655 - 33007 1348 ## SSON_3966 putative common antigen polymerase 30 14 Op 10 4/0.560 + CDS 33010 - 33750 863 ## COG1922 Teichoic acid biosynthesis proteins + Term 33769 - 33805 7.6 + Prom 33781 - 33840 4.5 31 15 Tu 1 . + CDS 33941 - 35326 1498 ## COG1113 Gamma-aminobutyrate permease and related permeases + TRNA 35429 - 35505 89.5 # Arg CCG 0 0 + TRNA 35564 - 35639 84.9 # His GTG 0 0 + TRNA 35660 - 35746 69.1 # Leu CAG 0 0 + TRNA 35789 - 35865 92.7 # Pro TGG 0 0 + Prom 35791 - 35850 80.3 32 16 Tu 1 . + CDS 36012 - 37247 771 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 33 17 Tu 1 . - CDS 37406 - 39061 1525 ## COG3119 Arylsulfatase A and related enzymes - Prom 39188 - 39247 8.7 - Term 39693 - 39731 4.0 34 18 Op 1 11/0.040 - CDS 39740 - 40936 1345 ## COG3071 Uncharacterized enzyme of heme biosynthesis 35 18 Op 2 10/0.040 - CDS 40939 - 42138 1365 ## COG2959 Uncharacterized enzyme of heme biosynthesis 36 18 Op 3 23/0.000 - CDS 42160 - 42900 613 ## COG1587 Uroporphyrinogen-III synthase 37 18 Op 4 . - CDS 42897 - 43838 1026 ## COG0181 Porphobilinogen deaminase - Prom 43947 - 44006 3.9 + Prom 44012 - 44071 5.3 38 19 Tu 1 . + CDS 44225 - 46771 2300 ## COG3072 Adenylate cyclase 39 20 Tu 1 . - CDS 46811 - 47131 500 ## COG1965 Protein implicated in iron transport, frataxin homolog - Prom 47155 - 47214 5.3 40 21 Tu 1 . + CDS 46922 - 47407 87 ## JW3780 hypothetical protein + Prom 47428 - 47487 4.0 41 22 Op 1 1/0.960 + CDS 47594 - 47797 201 ## COG5567 Predicted small periplasmic lipoprotein 42 22 Op 2 4/0.560 + CDS 47834 - 48658 865 ## COG0253 Diaminopimelate epimerase 43 22 Op 3 10/0.040 + CDS 48655 - 49362 662 ## COG3159 Uncharacterized protein conserved in bacteria 44 22 Op 4 8/0.080 + CDS 49359 - 50255 865 ## COG4973 Site-specific recombinase XerC 45 22 Op 5 5/0.440 + CDS 50255 - 50971 550 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 51001 - 51044 5.0 46 23 Tu 1 . + CDS 51055 - 53217 2272 ## COG0210 Superfamily I DNA and RNA helicases + Term 53231 - 53255 -1.0 47 24 Tu 1 . - CDS 53364 - 54128 748 ## COG3698 Predicted periplasmic protein 48 25 Tu 1 . + CDS 54498 - 55448 1196 ## COG0598 Mg2+ and Co2+ transporters + Term 55460 - 55496 7.3 49 26 Op 1 . - CDS 55491 - 55856 320 ## B21_03645 hypothetical protein 50 26 Op 2 . - CDS 55885 - 56265 115 ## JW5590 predicted inner membrane protein - Prom 56298 - 56357 3.2 - Term 56297 - 56334 1.7 51 27 Op 1 1/0.960 - CDS 56360 - 57250 1013 ## COG2962 Predicted permeases 52 27 Op 2 . - CDS 57302 - 57769 480 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 57798 - 57857 5.2 + Prom 57762 - 57821 4.3 53 28 Tu 1 . + CDS 57934 - 58803 1066 ## COG2829 Outer membrane phospholipase A + Term 58887 - 58920 4.5 + Prom 58848 - 58907 4.5 54 29 Op 1 4/0.560 + CDS 58930 - 60765 1785 ## COG0514 Superfamily II DNA helicase 55 29 Op 2 . + CDS 60829 - 61449 790 ## COG1280 Putative threonine efflux protein + Term 61473 - 61514 2.6 - Term 61461 - 61502 6.4 56 30 Tu 1 . - CDS 61511 - 62131 563 ## COG1280 Putative threonine efflux protein - Prom 62204 - 62263 4.9 + Prom 62037 - 62096 3.6 57 31 Op 1 5/0.440 + CDS 62242 - 63264 717 ## COG2267 Lysophospholipase 58 31 Op 2 3/0.720 + CDS 63272 - 64072 941 ## COG0561 Predicted hydrolases of the HAD superfamily 59 31 Op 3 . + CDS 64148 - 65047 1107 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 60 32 Tu 1 . - CDS 64935 - 65888 642 ## COG0583 Transcriptional regulator - Prom 65922 - 65981 4.9 + Prom 65928 - 65987 6.3 61 33 Tu 1 . + CDS 66125 - 68386 2712 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 68395 - 68427 6.3 - Term 68301 - 68338 1.8 62 34 Tu 1 . - CDS 68426 - 69241 853 ## COG0412 Dienelactone hydrolase and related enzymes - Prom 69269 - 69328 5.3 + Prom 69197 - 69256 6.5 63 35 Tu 1 . + CDS 69503 - 70264 905 ## COG2820 Uridine phosphorylase + Term 70281 - 70315 5.2 + Prom 70313 - 70372 3.0 64 36 Op 1 5/0.440 + CDS 70420 - 71832 1630 ## COG1322 Uncharacterized protein conserved in bacteria + Prom 71841 - 71900 3.2 65 36 Op 2 7/0.120 + CDS 71927 - 72682 363 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 66 36 Op 3 10/0.040 + CDS 72696 - 73301 715 ## COG3165 Uncharacterized protein conserved in bacteria 67 36 Op 4 6/0.120 + CDS 73298 - 74938 1489 ## COG0661 Predicted unusual protein kinase + Term 74960 - 74994 -1.0 68 36 Op 5 16/0.000 + CDS 75017 - 75286 200 ## PROTEIN SUPPORTED gi|90022866|ref|YP_528693.1| ribosomal protein L25 69 36 Op 6 28/0.000 + CDS 75290 - 75805 476 ## COG1826 Sec-independent protein secretion pathway components 70 36 Op 7 2/0.920 + CDS 75808 - 76584 883 ## COG0805 Sec-independent protein secretion pathway component TatC + Term 76591 - 76618 1.5 71 36 Op 8 . + CDS 76626 - 77408 583 ## COG0084 Mg-dependent DNase - Term 77333 - 77370 1.0 72 37 Tu 1 . - CDS 77405 - 77893 346 ## COG0250 Transcription antiterminator - Prom 77987 - 78046 6.4 + Prom 77926 - 77985 3.9 73 38 Op 1 6/0.120 + CDS 78060 - 79553 1641 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 74 38 Op 2 . + CDS 79599 - 80300 779 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases + Term 80398 - 80428 2.7 75 39 Op 1 20/0.000 - CDS 80583 - 81746 1369 ## COG0183 Acetyl-CoA acetyltransferase 76 39 Op 2 . - CDS 81756 - 83945 2758 ## COG1250 3-hydroxyacyl-CoA dehydrogenase - Prom 84008 - 84067 4.8 + Prom 84045 - 84104 2.4 77 40 Op 1 2/0.920 + CDS 84135 - 85466 1637 ## COG0006 Xaa-Pro aminopeptidase 78 40 Op 2 4/0.560 + CDS 85538 - 86080 490 ## COG1739 Uncharacterized conserved protein 79 40 Op 3 6/0.120 + CDS 86119 - 87570 1441 ## COG0168 Trk-type K+ transport systems, membrane components 80 40 Op 4 . + CDS 87582 - 88127 494 ## COG4635 Flavodoxin Predicted protein(s) >gi|223713504|gb|ACDM01000094.1| GENE 1 180 - 1019 598 279 aa, chain - ## HITS:1 COG:yifD+A KEGG:ns NR:ns ## COG: yifD+A COG0583 # Protein_GI_number: 16132258 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 279 1 279 279 537 100.0 1e-153 MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTAA GEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWECMLNQWLGRLYQNQDAHTG LQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQLLGYFTLALYTSAPSKLKGDL NYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQIAMLNGCTWLPVSWARKKGGLH TVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLDEVY >gi|223713504|gb|ACDM01000094.1| GENE 2 1138 - 1476 458 112 aa, chain + ## HITS:1 COG:ECs4699 KEGG:ns NR:ns ## COG: ECs4699 COG3085 # Protein_GI_number: 15833953 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 208 100.0 2e-54 MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNELDLGKREPVTEEEKLF VAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTDSDD >gi|223713504|gb|ACDM01000094.1| GENE 3 1501 - 3021 936 506 aa, chain - ## HITS:1 COG:yifB KEGG:ns NR:ns ## COG: yifB COG0606 # Protein_GI_number: 16131625 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Escherichia coli K12 # 1 506 11 516 516 982 100.0 0 MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEY PAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVP GAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTD AVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFL DELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKR QNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDII TRQHLQEAVSYRAIDRLLIHLQKLLT >gi|223713504|gb|ACDM01000094.1| GENE 4 3612 - 5258 1336 548 aa, chain + ## HITS:1 COG:ilvG KEGG:ns NR:ns ## COG: ilvG COG0028 # Protein_GI_number: 16132231 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1 548 1 548 548 1110 99.0 0 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA TGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLA CTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEVT FPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEAD YPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEM NKLRQAHVALQGDLNALLPALQQPLNINDWQQHCAQLRDEHSWRYDHPGDAIYAPLLLKQ LSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAVGAQVARPND TVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTD NPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASN SEMLEKLS >gi|223713504|gb|ACDM01000094.1| GENE 5 5255 - 5518 235 87 aa, chain + ## HITS:1 COG:ECs4703 KEGG:ns NR:ns ## COG: ECs4703 COG3978 # Protein_GI_number: 15833957 # Func_class: S Function unknown # Function: Acetolactate synthase (isozyme II), small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1 87 1 87 87 143 100.0 8e-35 MMQHQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQNINIELTVASPRSVDLL FSQLNKLVDVAHVAICQSTTTSQQIRA >gi|223713504|gb|ACDM01000094.1| GENE 6 5538 - 6467 1184 309 aa, chain + ## HITS:1 COG:ECs4704 KEGG:ns NR:ns ## COG: ECs4704 COG0115 # Protein_GI_number: 15833958 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Escherichia coli O157:H7 # 1 309 1 309 309 644 100.0 0 MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR LHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDV IIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGY QEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDK WGWLDQVNQ >gi|223713504|gb|ACDM01000094.1| GENE 7 6532 - 8382 2135 616 aa, chain + ## HITS:1 COG:ECs4705 KEGG:ns NR:ns ## COG: ECs4705 COG0129 # Protein_GI_number: 15833959 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli O157:H7 # 1 616 1 616 616 1210 99.0 0 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLA TSADKGAVRDKSKLGG >gi|223713504|gb|ACDM01000094.1| GENE 8 8385 - 9929 1552 514 aa, chain + ## HITS:1 COG:ilvA KEGG:ns NR:ns ## COG: ilvA COG1171 # Protein_GI_number: 16131630 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli K12 # 1 514 1 514 514 1011 100.0 0 MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHS FKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA VRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHL DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAE GVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI ALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLG GRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVR YMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFE LGDHEPDFETRLNELGYDCHDETNNPAFRFFLAG >gi|223713504|gb|ACDM01000094.1| GENE 9 9981 - 10874 894 297 aa, chain - ## HITS:1 COG:ilvY KEGG:ns NR:ns ## COG: ilvY COG0583 # Protein_GI_number: 16131631 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 297 1 297 297 564 100.0 1e-161 MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEA GEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSV EIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPVRNQ VSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVA LLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIEAFWKILPNHK >gi|223713504|gb|ACDM01000094.1| GENE 10 11024 - 12499 2142 491 aa, chain + ## HITS:1 COG:ilvC KEGG:ns NR:ns ## COG: ilvC COG0059 # Protein_GI_number: 16131632 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Escherichia coli K12 # 1 491 1 491 491 969 100.0 0 MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSG LDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQP LMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPE NDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKL VEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLF QKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVL MIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYG NYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGY MTDMKRIAVAG >gi|223713504|gb|ACDM01000094.1| GENE 11 12586 - 12867 275 93 aa, chain - ## HITS:1 COG:ECs4709 KEGG:ns NR:ns ## COG: ECs4709 COG0760 # Protein_GI_number: 15833963 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli O157:H7 # 1 93 1 93 93 188 100.0 2e-48 MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP AFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN >gi|223713504|gb|ACDM01000094.1| GENE 12 13296 - 13514 155 72 aa, chain - ## HITS:1 COG:yifNm KEGG:ns NR:ns ## COG: yifNm COG3692 # Protein_GI_number: 16132261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 69 15 83 163 143 98.0 7e-35 MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACI VVPLSTTRDQTS >gi|223713504|gb|ACDM01000094.1| GENE 13 13731 - 15752 2308 673 aa, chain + ## HITS:1 COG:rep KEGG:ns NR:ns ## COG: rep COG0210 # Protein_GI_number: 16131634 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 1 673 1 673 673 1322 99.0 0 MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNV LDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVV GDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEK FLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKK LGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIH GMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMM ERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGI TRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHL ANLKAMMAAKRGK >gi|223713504|gb|ACDM01000094.1| GENE 14 15799 - 17283 1608 494 aa, chain - ## HITS:1 COG:ECs4712 KEGG:ns NR:ns ## COG: ECs4712 COG0248 # Protein_GI_number: 15833966 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Escherichia coli O157:H7 # 1 494 1 494 494 961 100.0 0 MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSENALSNEAMERG WQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQEILGCPVQVISGEEEARLI YQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRNLGQE NFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQALQEIMMAQGMDERITLEKLQQLK QRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIFTELNIQCMTLAGGALREGLVYGML HLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVAANFFDQVENEWHLEAISRDLLISACQ LHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNAVP PRVAEQLCRLLRLAIIFASRRRDDLVPEMTLQANHELLTLTLPQGWLTQHPLGKEIIAQE SQWQSYVHWPLEVH >gi|223713504|gb|ACDM01000094.1| GENE 15 17419 - 18684 1312 421 aa, chain - ## HITS:1 COG:rhlB KEGG:ns NR:ns ## COG: rhlB COG0513 # Protein_GI_number: 16131636 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1 421 1 421 421 862 100.0 0 MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRS G >gi|223713504|gb|ACDM01000094.1| GENE 16 18815 - 19144 508 109 aa, chain + ## HITS:1 COG:ECs4714 KEGG:ns NR:ns ## COG: ECs4714 COG0526 # Protein_GI_number: 15833968 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 109 19 127 127 221 100.0 2e-58 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA >gi|223713504|gb|ACDM01000094.1| GENE 17 19471 - 20730 1477 419 aa, chain + ## HITS:1 COG:ECs4716 KEGG:ns NR:ns ## COG: ECs4716 COG1158 # Protein_GI_number: 15833970 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Escherichia coli O157:H7 # 1 419 1 419 419 815 100.0 0 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS >gi|223713504|gb|ACDM01000094.1| GENE 18 20740 - 20958 183 72 aa, chain + ## HITS:1 COG:no KEGG:ECO111_4609 NR:ns ## KEGG: ECO111_4609 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 72 1 72 72 130 100.0 1e-29 MPKTPRVYVAFCFYICNLNAALAMLGKFLEFAGMLCNLHIKWLIFAQDWWVWNGLSLLNK GLRGYTSANNFL >gi|223713504|gb|ACDM01000094.1| GENE 19 20970 - 22073 890 367 aa, chain + ## HITS:1 COG:rfe KEGG:ns NR:ns ## COG: rfe COG0472 # Protein_GI_number: 16131640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Escherichia coli K12 # 1 367 1 367 367 615 100.0 1e-176 MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQGLIPLVGGISVYAGIC FTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRATIQAAVGIVMMVFGKLYLS SLGYIFGSWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDGLLGGLSCVSFAAIGMILWFD GQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDAGSTLIGFTVIWILLETTQGKTH PISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHLIMRAGFTSRQAFVLITL AAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLYGYCIKRAWKVARFIKRVKRRLRRNRG GSPNLTK >gi|223713504|gb|ACDM01000094.1| GENE 20 22085 - 23131 1057 348 aa, chain + ## HITS:1 COG:ECs4718 KEGG:ns NR:ns ## COG: ECs4718 COG3765 # Protein_GI_number: 15833972 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli O157:H7 # 1 348 2 349 349 682 100.0 0 MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAI TDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQ TDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVA FASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNIS RSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNTLNVGPTLDP RFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTRRCSK >gi|223713504|gb|ACDM01000094.1| GENE 21 23187 - 24317 971 376 aa, chain + ## HITS:1 COG:ECs4719 KEGG:ns NR:ns ## COG: ECs4719 COG0381 # Protein_GI_number: 15833973 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Escherichia coli O157:H7 # 1 376 15 390 390 746 99.0 0 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNI MQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGL RTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWV RDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSL GKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQ ACSRILEALKNNRISL >gi|223713504|gb|ACDM01000094.1| GENE 22 24314 - 25576 1230 420 aa, chain + ## HITS:1 COG:ECs4720 KEGG:ns NR:ns ## COG: ECs4720 COG0677 # Protein_GI_number: 15833974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 420 1 420 420 850 100.0 0 MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKT AVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAARSIAPVLKKGALVILEST SPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVIGGM TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV WELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPQQARLIRTAREVNDHKPFWVI DQVKAAVADCLAATDKRASELKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVV EPNIHQLPKKLTGLCTLAQLDEALATADVLVMLVDHSQFKVINGDNVHQQYVVDAKGVWR >gi|223713504|gb|ACDM01000094.1| GENE 23 25576 - 26643 1196 355 aa, chain + ## HITS:1 COG:rffG KEGG:ns NR:ns ## COG: rffG COG1088 # Protein_GI_number: 16131644 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Escherichia coli K12 # 1 355 1 355 355 741 99.0 0 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCVA TTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGHDLR YAIDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQVQDGSYQGERLGLKG >gi|223713504|gb|ACDM01000094.1| GENE 24 26662 - 27543 947 293 aa, chain + ## HITS:1 COG:rffH KEGG:ns NR:ns ## COG: rffH COG1209 # Protein_GI_number: 16131645 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli K12 # 1 293 1 293 293 593 99.0 1e-169 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKL RHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKV VEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTV EKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLQELLRARPRQY >gi|223713504|gb|ACDM01000094.1| GENE 25 27521 - 28195 396 224 aa, chain + ## HITS:1 COG:ECs4723 KEGG:ns NR:ns ## COG: ECs4723 COG0454 # Protein_GI_number: 15833977 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 44 224 1 181 181 322 99.0 3e-88 MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRVQAKIAASNTGELDALQ QLGFSLVEGEVDLALPVNNASDSGAVVAQETDIPALRQLASAAFAQSRFRAPWYAPDASS RFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNATDARIGLLAGRGAGAELMQT ALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVESTAYWLYR >gi|223713504|gb|ACDM01000094.1| GENE 26 28200 - 29330 1262 376 aa, chain + ## HITS:1 COG:wecE KEGG:ns NR:ns ## COG: wecE COG0399 # Protein_GI_number: 16131647 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Escherichia coli K12 # 1 376 1 376 376 799 100.0 0 MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLE MAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKT RVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHET KNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQA AYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDI DDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLS PVNQRTVIATLLNYFS >gi|223713504|gb|ACDM01000094.1| GENE 27 29332 - 30582 1270 416 aa, chain + ## HITS:1 COG:wzxE KEGG:ns NR:ns ## COG: wzxE COG2244 # Protein_GI_number: 16131648 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1 416 1 416 416 697 100.0 0 MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFRQLITVLGVLAGAGIFN GVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAAAPISQGLFGNTDYQGLVR LVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGVLAYYVSYRLGGYEGALLGLA LIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLSKFTLMALITSVTLPVAYIMMRK LLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDITREVVKSLKFV LPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL RFYILAEVSQFTLLMVFAHWLIPAHGALGAAQAYMATYIVYFSLCCGVFLLWRRRA >gi|223713504|gb|ACDM01000094.1| GENE 28 30579 - 31658 880 359 aa, chain + ## HITS:1 COG:no KEGG:EcolC_4210 NR:ns ## KEGG: EcolC_4210 # Name: not_defined # Def: 4-alpha-L-fucosyltransferase # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 359 1 359 359 749 99.0 0 MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDDGLSDSCPALSVQFFPG KKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPSQFFWHIWGADLYELSSGL RYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGELLFFPTRMDPSLNTMANDRQR EGKMTILVGNSGDRSNEHIAALRAVHQQFGDTVKVVVPMGYPPNNEAYIEEVRQAGLELF SEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQGIGTLCLLIQAGIPCVLNRENPFWQ DMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKNTIAFFSPNYLQGWQRALAIAAGEVA >gi|223713504|gb|ACDM01000094.1| GENE 29 31655 - 33007 1348 450 aa, chain + ## HITS:1 COG:no KEGG:SSON_3966 NR:ns ## KEGG: SSON_3966 # Name: wecF # Def: putative common antigen polymerase # Organism: S.sonnei # Pathway: not_defined # 1 450 1 450 450 751 100.0 0 MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFR FDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVIL MGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM FWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVF IPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI IKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACL MIAKLLYWLFESAGLIHKRTKSSLRTQVEG >gi|223713504|gb|ACDM01000094.1| GENE 30 33010 - 33750 863 246 aa, chain + ## HITS:1 COG:wecG KEGG:ns NR:ns ## COG: wecG COG1922 # Protein_GI_number: 16131650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Escherichia coli K12 # 1 246 1 246 246 477 100.0 1e-134 MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAINAEKMLTIEDNAEVRE LINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEV LAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIMRDC RLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIKRQLRLLRYLRW HYTGNL >gi|223713504|gb|ACDM01000094.1| GENE 31 33941 - 35326 1498 461 aa, chain + ## HITS:1 COG:ECs4729 KEGG:ns NR:ns ## COG: ECs4729 COG1113 # Protein_GI_number: 15833983 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1 461 1 461 461 808 100.0 0 MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIM RSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP EMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGG QSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKV LWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCN SGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVF VYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIG MYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE >gi|223713504|gb|ACDM01000094.1| GENE 32 36012 - 37247 771 411 aa, chain + ## HITS:1 COG:aslB KEGG:ns NR:ns ## COG: aslB COG0641 # Protein_GI_number: 16131652 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Escherichia coli K12 # 1 411 1 411 411 874 99.0 0 MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTHMDDDTLEAYVRHYIAA SEPQNEVAFTWQGGEPTLLGLAFYRRAVALQAKYGAGRKISNSFQTNGVLLDDEWCAFLA EHHFLVGLSLDGPPEIHNQYRVTKGGRPTHKLVMRALTLLQKHHVDYNVLVCVNRTSAQQ PLQVYDFLCDAGVEFIQFIPVVERLADETTARDGLKLHAPGDIQGELTEWSVRPEEFGEF LVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVCHHQPTCGRSVIVEHNGDVYACDHY VYPQYRLGNMHQQTIAEMIDSPQQQAFGEDKFKQLPAQCRSCNVLKACWGGCPKHRFMLD ASGKPGLNYLCAGYQRYFRHLPPYLKAMADLLAHGRPASDIMHAHLLVVSK >gi|223713504|gb|ACDM01000094.1| GENE 33 37406 - 39061 1525 551 aa, chain - ## HITS:1 COG:aslA KEGG:ns NR:ns ## COG: aslA COG3119 # Protein_GI_number: 16131653 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1 551 1 551 551 1112 100.0 0 MEFSFSPKRLVVAVAAALPLMASAADTPSTATARKGFAGYDHPNQYLVKPATTIADNMMP VMQHPAQDKETQQKLAELEKKTGKKPNVVVFLLDDVGWMDVGFNGGGVAVGNPTPDIDAV ASQGLILTSAYSQPSSSPTRATILTGQYSIHHGILMPPMYGQPGGLQGLTTLPQLLHDQG YVTQAIGKWHMGENKESQPQNVGFDDFRGFNSVSDMYTEWRDVHVNPEVALSPDRSEYIK QLPFSKDDVHAVRGGEQQAIADITPKYMEDLDQRWMDYGVKFLDKMAKSDKPFFLYYGTR GCHFDNYPNAKYAGSSPARTSYGDCMVEMNDVFANLYKTLEKNGQLDNTLIVFTSDNGPE AEVPPHGRTPFRGAKGSTWEGGVRVPTFVYWKGMIQPRKSDGIVDLADLFPTALDLAGHP GAKVANLVPKTTFIDGVDQTSFFLGTNGQSNRKAEHYFLNGKLAAVRMDEFKYHVLIQQP YAYTQSGYQGGFTGTVMQTAGSSVFNLYTDPQESDSIGVRHIPMGVPLQTEMHAYMEILK KYPPRAQIKSD >gi|223713504|gb|ACDM01000094.1| GENE 34 39740 - 40936 1345 398 aa, chain - ## HITS:1 COG:ECs4732 KEGG:ns NR:ns ## COG: ECs4732 COG3071 # Protein_GI_number: 15833986 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli O157:H7 # 12 398 12 398 398 728 100.0 0 MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEW LLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMAKNADHAEQPVVN YLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNENHAARHGVDKLL EVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQAR ADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIIDGLKRQYDDRLLL PIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPD AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNPPQ >gi|223713504|gb|ACDM01000094.1| GENE 35 40939 - 42138 1365 399 aa, chain - ## HITS:1 COG:hemX KEGG:ns NR:ns ## COG: hemX COG2959 # Protein_GI_number: 16131655 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli K12 # 1 399 1 393 393 583 98.0 1e-166 MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAIAIALAAGIGLYGWGKQ QAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLKQANRQQETLAKQLDEVQQ KVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLITV RRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRLADNDSDGSPMDSDGEELSSSIS EWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQDIYLRENIRSRLLVAAQAVPRHQEE TYRQALENVSTWVRAYYDTDDATTKAFLDEVDQLSQQNISMDLPETLQSQAMLEKLMQTR VRNLLAQPAAGTTEAKPAPAPAPAPAPQADTPAAAPQGE >gi|223713504|gb|ACDM01000094.1| GENE 36 42160 - 42900 613 246 aa, chain - ## HITS:1 COG:hemD KEGG:ns NR:ns ## COG: hemD COG1587 # Protein_GI_number: 16131656 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Escherichia coli K12 # 1 246 1 246 246 473 100.0 1e-133 MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGQQLPQLADQLAALGESDLLFALS QHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQKILYPQDREISEVLLQLPE LQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQRCAIHYDGAEEAMRWQAREVT MVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERLAKLARELGWQDIKVADNADNDA LLRALQ >gi|223713504|gb|ACDM01000094.1| GENE 37 42897 - 43838 1026 313 aa, chain - ## HITS:1 COG:ECs4735 KEGG:ns NR:ns ## COG: ECs4735 COG0181 # Protein_GI_number: 15833989 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Escherichia coli O157:H7 # 1 313 8 320 320 594 99.0 1e-170 MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKG LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP AGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLE SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG GCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAR EILAEVYNGDAPA >gi|223713504|gb|ACDM01000094.1| GENE 38 44225 - 46771 2300 848 aa, chain + ## HITS:1 COG:cyaA KEGG:ns NR:ns ## COG: cyaA COG3072 # Protein_GI_number: 16131658 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate cyclase # Organism: Escherichia coli K12 # 1 848 1 848 848 1782 100.0 0 MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKG ICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMGSTSSVGQSCSSDLDIWVC HQSWLDSEERQLLQRKCSLLENWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHI LLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSA EEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLD PYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVCEKLSRERACVGWRRAVLSQLVSEWGW DEARLAMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTR KLYAAFEALPGKVTLVNPQISPDLSEPNLTFIYVPPGRANRSGWYLYNRAPNIESIISHQ PLEYNRYLNKLVAWAWFNGLLTSRTRLYIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTP KALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRN SWNEVRTLHFNGEQSMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSE CIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSV QVETNHVKLPAVVDGFASEGIIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELV RDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDT PLLQQYFS >gi|223713504|gb|ACDM01000094.1| GENE 39 46811 - 47131 500 106 aa, chain - ## HITS:1 COG:STM3943 KEGG:ns NR:ns ## COG: STM3943 COG1965 # Protein_GI_number: 16767214 # Func_class: P Inorganic ion transport and metabolism # Function: Protein implicated in iron transport, frataxin homolog # Organism: Salmonella typhimurium LT2 # 1 106 1 106 106 193 94.0 5e-50 MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITFENGSKIIINRQEPLHQV WLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVSFR >gi|223713504|gb|ACDM01000094.1| GENE 40 46922 - 47407 87 161 aa, chain + ## HITS:1 COG:no KEGG:JW3780 NR:ns ## KEGG: JW3780 # Name: yzcX # Def: hypothetical protein # Organism: E.coli_J # Pathway: not_defined # 1 161 1 161 161 317 100.0 9e-86 MVAALFGCQPYLVQRLLAVDNDFAAILKGNGQYAAVDFAVDIAVAIPVVQAFFNGQPELI SQAMKFTVVHCCILFLSDGGSIAAWGQGFKVCTSAAAFRHDSSVTGIMMSLCSERFVSSL GRSYTTSFPVSGKHYDQVYRASILTLTELKKTTNKPHCDSA >gi|223713504|gb|ACDM01000094.1| GENE 41 47594 - 47797 201 67 aa, chain + ## HITS:1 COG:Z5325 KEGG:ns NR:ns ## COG: Z5325 COG5567 # Protein_GI_number: 15804397 # Func_class: N Cell motility # Function: Predicted small periplasmic lipoprotein # Organism: Escherichia coli O157:H7 EDL933 # 1 67 1 67 67 109 100.0 1e-24 MKNVFKALTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVETQTQSTVPDKNDRATGD GPSQVNY >gi|223713504|gb|ACDM01000094.1| GENE 42 47834 - 48658 865 274 aa, chain + ## HITS:1 COG:ECs4739 KEGG:ns NR:ns ## COG: ECs4739 COG0253 # Protein_GI_number: 15833993 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Escherichia coli O157:H7 # 1 274 2 275 275 568 100.0 1e-162 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE PNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLE SHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV ELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL >gi|223713504|gb|ACDM01000094.1| GENE 43 48655 - 49362 662 235 aa, chain + ## HITS:1 COG:yigA KEGG:ns NR:ns ## COG: yigA COG3159 # Protein_GI_number: 16131662 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 235 1 235 235 445 100.0 1e-125 MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVPHPVRGTVSLVEWHMAR ARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSLDDMLMRFHRWARDLGLAG ASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQHYLGPLNGPELLVVLPEAKA VGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLHEIALMLPELLERWIERV >gi|223713504|gb|ACDM01000094.1| GENE 44 49359 - 50255 865 298 aa, chain + ## HITS:1 COG:xerC KEGG:ns NR:ns ## COG: xerC COG4973 # Protein_GI_number: 16131663 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Escherichia coli K12 # 1 298 1 298 298 589 100.0 1e-168 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK >gi|223713504|gb|ACDM01000094.1| GENE 45 50255 - 50971 550 238 aa, chain + ## HITS:1 COG:yigB KEGG:ns NR:ns ## COG: yigB COG1011 # Protein_GI_number: 16131664 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli K12 # 1 238 1 238 238 486 100.0 1e-137 MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHPALRSFQNEDLQRLRQA VREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAMINFAKWRSRIDVPQQTHD TLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYFLAAEKLNVPI GEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTWDSRLLPHLEISRLASLTSLI >gi|223713504|gb|ACDM01000094.1| GENE 46 51055 - 53217 2272 720 aa, chain + ## HITS:1 COG:uvrD KEGG:ns NR:ns ## COG: uvrD COG0210 # Protein_GI_number: 16131665 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 1 720 1 720 720 1436 100.0 0 MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLESV >gi|223713504|gb|ACDM01000094.1| GENE 47 53364 - 54128 748 254 aa, chain - ## HITS:1 COG:yigEm KEGG:ns NR:ns ## COG: yigEm COG3698 # Protein_GI_number: 16132262 # Func_class: S Function unknown # Function: Predicted periplasmic protein # Organism: Escherichia coli K12 # 1 254 1 254 254 517 100.0 1e-147 MAHQLLIGKGMITLNLKRIFLALTLLPLFAVAADDCALSDPTLTVQAYTVNPQTERVKMY WQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLGLYIENGQQKVALNLASGE GNFFIRPGGVFYVAGDKVGIVRLDAFKTSKEIQFAVQSGPMLMENGVINPRIHPNVASSK IRNGVGINKHGNAVFLLSQQATNFYDFACYAKAKLNVEQLLYLDGTISHMYMKGGAIPWQ RYPFVTMISVERKG >gi|223713504|gb|ACDM01000094.1| GENE 48 54498 - 55448 1196 316 aa, chain + ## HITS:1 COG:ECs4746 KEGG:ns NR:ns ## COG: ECs4746 COG0598 # Protein_GI_number: 15834000 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Escherichia coli O157:H7 # 1 316 1 316 316 607 100.0 1e-174 MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIE ASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELPAFRLYRMRAR SQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSRVIMEGHQGDEYDEALSTLAE LEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFL MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIIFMI LAGLAPYLYFKRKNWL >gi|223713504|gb|ACDM01000094.1| GENE 49 55491 - 55856 320 121 aa, chain - ## HITS:1 COG:no KEGG:B21_03645 NR:ns ## KEGG: B21_03645 # Name: yigF # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 121 6 126 126 218 100.0 4e-56 MNDGSLSEKWKYRFNFYDQHGFPGFWGATPEYKAAFKALKVRQRLTIQMNFIAFFCSWIY LFVLGLWKKAIIVLLLGILSLFVGALIGVNILGIAVAAYVAVNTNKWFYEKEVKGLNTWS L >gi|223713504|gb|ACDM01000094.1| GENE 50 55885 - 56265 115 126 aa, chain - ## HITS:1 COG:no KEGG:JW5590 NR:ns ## KEGG: JW5590 # Name: yigG # Def: predicted inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 126 1 126 126 182 100.0 3e-45 MLRIFIPTSNGKISRRRYIFSFILINFIFAFLIIFFNDGEAGFLVIVSTIVLHYLVINMN CQRLRDSGFIYIKTYVFGTLAVYIISIITMIAEDFACSGNGSMIFLICYFSTFSMLMLAP TDSSKQ >gi|223713504|gb|ACDM01000094.1| GENE 51 56360 - 57250 1013 296 aa, chain - ## HITS:1 COG:ECs4749 KEGG:ns NR:ns ## COG: ECs4749 COG2962 # Protein_GI_number: 15834003 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 1 295 1 295 295 508 99.0 1e-144 MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQW SYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF LGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGML IETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLS TLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK >gi|223713504|gb|ACDM01000094.1| GENE 52 57302 - 57769 480 155 aa, chain - ## HITS:1 COG:ECs4750 KEGG:ns NR:ns ## COG: ECs4750 COG2050 # Protein_GI_number: 15834004 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli O157:H7 # 1 155 7 161 161 295 100.0 2e-80 MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAFKNQPMMVGNWAQSILH GGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTIDLRVDYLRPGRGERFTAT SSLLRAGNKVAVARVELHNEEQLYIASATATYMVG >gi|223713504|gb|ACDM01000094.1| GENE 53 57934 - 58803 1066 289 aa, chain + ## HITS:1 COG:ECs4751 KEGG:ns NR:ns ## COG: ECs4751 COG2829 # Protein_GI_number: 15834005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane phospholipase A # Organism: Escherichia coli O157:H7 # 1 289 1 289 289 572 100.0 1e-163 MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYL IYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQKSWWQL SNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYT RLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGY GGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF >gi|223713504|gb|ACDM01000094.1| GENE 54 58930 - 60765 1785 611 aa, chain + ## HITS:1 COG:ECs4752 KEGG:ns NR:ns ## COG: ECs4752 COG0514 # Protein_GI_number: 15834006 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Escherichia coli O157:H7 # 1 611 1 611 611 1253 99.0 0 MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGCDCLVVMPTGGGKSLCYQ IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL IRAHVDGDDEE >gi|223713504|gb|ACDM01000094.1| GENE 55 60829 - 61449 790 206 aa, chain + ## HITS:1 COG:ECs4753 KEGG:ns NR:ns ## COG: ECs4753 COG1280 # Protein_GI_number: 15834007 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 364 100.0 1e-101 MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGL HLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLL TNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGY QRLAKWIDGFAGALFAGFGIHLIISR >gi|223713504|gb|ACDM01000094.1| GENE 56 61511 - 62131 563 206 aa, chain - ## HITS:1 COG:ECs4754 KEGG:ns NR:ns ## COG: ECs4754 COG1280 # Protein_GI_number: 15834008 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 352 100.0 3e-97 MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIAGLQTGLAIHIVLVGVG LGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSLASTQSRRHLFQRAVFVNL TNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDIIVMIGYATLAQRIALWIKGPK QMKALNKIFGSLFMLVGALLASARHA >gi|223713504|gb|ACDM01000094.1| GENE 57 62242 - 63264 717 340 aa, chain + ## HITS:1 COG:ECs4755 KEGG:ns NR:ns ## COG: ECs4755 COG2267 # Protein_GI_number: 15834009 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Escherichia coli O157:H7 # 1 340 1 340 340 699 99.0 0 MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVIC PGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAF WQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQI LNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHW VRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVI KGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV >gi|223713504|gb|ACDM01000094.1| GENE 58 63272 - 64072 941 266 aa, chain + ## HITS:1 COG:Z5347 KEGG:ns NR:ns ## COG: Z5347 COG0561 # Protein_GI_number: 15804418 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli O157:H7 EDL933 # 1 266 40 305 305 556 99.0 1e-158 MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE MRFFKEAVFQYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD LHPELEVIGTNADDAVPHYLRKLYLS >gi|223713504|gb|ACDM01000094.1| GENE 59 64148 - 65047 1107 299 aa, chain + ## HITS:1 COG:ECs4757 KEGG:ns NR:ns ## COG: ECs4757 COG0697 # Protein_GI_number: 15834011 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 299 1 299 299 540 100.0 1e-153 MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLY MLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALL AVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGA FLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNM HVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE >gi|223713504|gb|ACDM01000094.1| GENE 60 64935 - 65888 642 317 aa, chain - ## HITS:1 COG:ECs4758 KEGG:ns NR:ns ## COG: ECs4758 COG0583 # Protein_GI_number: 15834012 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 317 1 317 317 614 100.0 1e-176 MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP QGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQVEM DFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDYEVRLVLAPDHPLAAKTRIT PEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHW VVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQPVTEAFIRSARNHACDHLPFVKSAE RPTYDAPTVRPGSPARL >gi|223713504|gb|ACDM01000094.1| GENE 61 66125 - 68386 2712 753 aa, chain + ## HITS:1 COG:metE KEGG:ns NR:ns ## COG: metE COG0620 # Protein_GI_number: 16131678 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Escherichia coli K12 # 1 753 1 753 753 1530 100.0 0 MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLP VGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFN TNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDR LSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLL TTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRAD LTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLR DALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRAR FKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVL VHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYA QSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDE PALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDAD VITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERL WVNPDCGLKTRGWPETRAALANMVQAAQNLRRG >gi|223713504|gb|ACDM01000094.1| GENE 62 68426 - 69241 853 271 aa, chain - ## HITS:1 COG:ECs4760 KEGG:ns NR:ns ## COG: ECs4760 COG0412 # Protein_GI_number: 15834014 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Escherichia coli O157:H7 # 1 271 23 293 293 548 99.0 1e-156 MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPAYHARPKQSDGPLPVVI VVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPDSQV LADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDKSLN SPKQPVDIATDLNAPILGLYGGQDNSIPQESVETMRQALRAANAKAEIIVYPDAGHAFNA DYRPSYHAASAEDGWQRMLEWFKQYGGKKSL >gi|223713504|gb|ACDM01000094.1| GENE 63 69503 - 70264 905 253 aa, chain + ## HITS:1 COG:udp KEGG:ns NR:ns ## COG: udp COG2820 # Protein_GI_number: 16131680 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Escherichia coli K12 # 1 253 1 253 253 489 100.0 1e-138 MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKLASHREFTTWRAELDGK PVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGAS LHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHF KGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESH AVKIVVEAARRLL >gi|223713504|gb|ACDM01000094.1| GENE 64 70420 - 71832 1630 470 aa, chain + ## HITS:1 COG:ECs4762 KEGG:ns NR:ns ## COG: ECs4762 COG1322 # Protein_GI_number: 15834016 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 470 6 475 475 805 100.0 0 MVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELL NNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEH SNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLTHEIRNLQQLNAQMA QEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIV RLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGL RTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQS RNAQQIADRASKLYDKMRLFIDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFR GLGVEIKREINPDLAEQAVSQDEEYRLRSVPEQPNDEAYQRDDEYNQQSR >gi|223713504|gb|ACDM01000094.1| GENE 65 71927 - 72682 363 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 28 250 1 221 221 144 34 2e-33 MVDKLQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSG VRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYV QANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLS KAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTA GVVALHRGYKF >gi|223713504|gb|ACDM01000094.1| GENE 66 72696 - 73301 715 201 aa, chain + ## HITS:1 COG:yigP KEGG:ns NR:ns ## COG: yigP COG3165 # Protein_GI_number: 16131683 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 201 1 201 201 375 100.0 1e-104 MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVL GEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDIQVVQNFVALADLAEFDPA ELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEE TAAVERAVDALTKRLEKLEAK >gi|223713504|gb|ACDM01000094.1| GENE 67 73298 - 74938 1489 546 aa, chain + ## HITS:1 COG:ECs4765 KEGG:ns NR:ns ## COG: ECs4765 COG0661 # Protein_GI_number: 15834019 # Func_class: R General function prediction only # Function: Predicted unusual protein kinase # Organism: Escherichia coli O157:H7 # 1 546 1 546 546 1109 100.0 0 MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKLLGERLRLA LQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEA WFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRL LPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGM MVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEH PENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFE FAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLY PQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQH SVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFV GWRKTR >gi|223713504|gb|ACDM01000094.1| GENE 68 75017 - 75286 200 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022866|ref|YP_528693.1| ribosomal protein L25 [Saccharophagus degradans 2-40] # 1 79 3 81 83 81 51 1e-14 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFT AKTIADKQADTNQEQAKTEDAKRHDKEQV >gi|223713504|gb|ACDM01000094.1| GENE 69 75290 - 75805 476 171 aa, chain + ## HITS:1 COG:ECs4767 KEGG:ns NR:ns ## COG: ECs4767 COG1826 # Protein_GI_number: 15834021 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Escherichia coli O157:H7 # 1 171 1 171 171 267 100.0 9e-72 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ DSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNE AAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP >gi|223713504|gb|ACDM01000094.1| GENE 70 75808 - 76584 883 258 aa, chain + ## HITS:1 COG:ECs4768 KEGG:ns NR:ns ## COG: ECs4768 COG0805 # Protein_GI_number: 15834022 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Escherichia coli O157:H7 # 1 258 1 258 258 465 100.0 1e-131 MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMI ATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYI GMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCW MGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG RNREEENDAEAESEKTEE >gi|223713504|gb|ACDM01000094.1| GENE 71 76626 - 77408 583 260 aa, chain + ## HITS:1 COG:tatD KEGG:ns NR:ns ## COG: tatD COG0084 # Protein_GI_number: 16132236 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli K12 # 1 260 5 264 264 539 100.0 1e-153 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAG VHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADL NMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDE RRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGED AAWLAATTDANVKTLFGIAF >gi|223713504|gb|ACDM01000094.1| GENE 72 77405 - 77893 346 162 aa, chain - ## HITS:1 COG:ECs4770 KEGG:ns NR:ns ## COG: ECs4770 COG0250 # Protein_GI_number: 15834024 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 330 100.0 9e-91 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL >gi|223713504|gb|ACDM01000094.1| GENE 73 78060 - 79553 1641 497 aa, chain + ## HITS:1 COG:ubiD KEGG:ns NR:ns ## COG: ubiD COG0043 # Protein_GI_number: 16131689 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Escherichia coli K12 # 1 497 1 497 497 1036 100.0 0 MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSM PVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNM PTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYR QQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDS FPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEG CSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTR MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH IDAIWDELAIFNNGKSA >gi|223713504|gb|ACDM01000094.1| GENE 74 79599 - 80300 779 233 aa, chain + ## HITS:1 COG:ECs4772 KEGG:ns NR:ns ## COG: ECs4772 COG0543 # Protein_GI_number: 15834026 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Escherichia coli O157:H7 # 1 233 1 233 233 480 100.0 1e-136 MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGF IELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARS ILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTG TVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI >gi|223713504|gb|ACDM01000094.1| GENE 75 80583 - 81746 1369 387 aa, chain - ## HITS:1 COG:fadA KEGG:ns NR:ns ## COG: fadA COG0183 # Protein_GI_number: 16131691 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 387 1 387 387 732 99.0 0 MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQ TLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEH MGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAAT QSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVNGMVTAGTSSA LSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSAS DIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLM ERKDVQFGLATMCIGLGQGIATVFERV >gi|223713504|gb|ACDM01000094.1| GENE 76 81756 - 83945 2758 729 aa, chain - ## HITS:1 COG:fadB_2 KEGG:ns NR:ns ## COG: fadB_2 COG1250 # Protein_GI_number: 16131692 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 307 729 1 423 423 843 100.0 0 MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSN KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCEC VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALK IGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPLKLSKIEATMSFTIAKGMV AQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVK GKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLL NKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQ DTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAW ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYL LDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKP KKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVY GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPA RPVGDLKTA >gi|223713504|gb|ACDM01000094.1| GENE 77 84135 - 85466 1637 443 aa, chain + ## HITS:1 COG:pepQ KEGG:ns NR:ns ## COG: pepQ COG0006 # Protein_GI_number: 16131693 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1 443 1 443 443 927 100.0 0 MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWV PVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTEDVEVIALPKADGIGSLLP AARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNG HRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEM RSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQ FHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHL AAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGI RIEDNVVIHENNVENMTRDLKLA >gi|223713504|gb|ACDM01000094.1| GENE 78 85538 - 86080 490 180 aa, chain + ## HITS:1 COG:yigZ KEGG:ns NR:ns ## COG: yigZ COG1739 # Protein_GI_number: 16131694 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 180 26 205 205 329 100.0 2e-90 MLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPML AQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCE YHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE >gi|223713504|gb|ACDM01000094.1| GENE 79 86119 - 87570 1441 483 aa, chain + ## HITS:1 COG:ECs4777 KEGG:ns NR:ns ## COG: ECs4777 COG0168 # Protein_GI_number: 15834031 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Escherichia coli O157:H7 # 1 483 1 483 483 848 100.0 0 MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKE KGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGL DSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAE TAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINT IIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFTLVVICTLVLWFHNVYSS ALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRIL LLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGV DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTF WRE >gi|223713504|gb|ACDM01000094.1| GENE 80 87582 - 88127 494 181 aa, chain + ## HITS:1 COG:ECs4778 KEGG:ns NR:ns ## COG: ECs4778 COG4635 # Protein_GI_number: 15834032 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism # Function: Flavodoxin # Organism: Escherichia coli O157:H7 # 1 181 1 181 181 358 100.0 2e-99 MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYG HYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMNSQWRPDRCA VIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTL K Prediction of potential genes in microbial genomes Time: Mon May 16 19:36:38 2011 Seq name: gi|223713503|gb|ACDM01000095.1| Escherichia sp. 4_1_40B cont1.95, whole genome shotgun sequence Length of sequence - 16959 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 16, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 60 - 266 181 ## ECP_2980 hypothetical protein - Prom 356 - 415 6.4 + Prom 391 - 450 3.6 2 2 Tu 1 . + CDS 498 - 1946 540 ## RPB_3532 hypothetical protein + Prom 2333 - 2392 7.4 3 3 Tu 1 . + CDS 2462 - 2941 -23 ## gi|256026198|ref|ZP_05440063.1| hypothetical protein E4_22691 + Term 2951 - 2984 6.5 4 4 Op 1 9/0.000 - CDS 4747 - 5034 403 ## COG1484 DNA replication protein 5 4 Op 2 . - CDS 5034 - 5513 270 ## COG4584 Transposase and inactivated derivatives - Prom 5738 - 5797 3.4 6 5 Tu 1 . + CDS 5451 - 5699 85 ## gi|256026202|ref|ZP_05440067.1| hypothetical protein E4_22726 7 6 Tu 1 . + CDS 5941 - 6582 148 ## p1ECUMN_0159 hypothetical protein 8 7 Tu 1 . - CDS 6450 - 6782 95 ## p1ECUMN_0160 hypothetical protein - Prom 6872 - 6931 2.4 9 8 Tu 1 . + CDS 7485 - 8399 524 ## ECH74115_B0026 initiator RepB protein + Term 8407 - 8455 13.4 - Term 8394 - 8444 9.1 10 9 Tu 1 . - CDS 8678 - 9418 219 ## COG0582 Integrase - Prom 9531 - 9590 2.5 11 10 Op 1 . - CDS 9782 - 9949 109 ## SeSA_A3113 RelE/ParE family plasmid stabilization system protein 12 10 Op 2 . - CDS 10018 - 10284 249 ## COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain - Prom 10430 - 10489 5.9 - Term 10475 - 10535 3.4 13 11 Tu 1 . - CDS 10564 - 11115 237 ## gi|256026209|ref|ZP_05440074.1| NACHT family-like NTPase - Prom 11232 - 11291 6.2 + Prom 12706 - 12765 7.6 14 12 Tu 1 . + CDS 12871 - 13482 422 ## KPK_B0045 transposase + Prom 13712 - 13771 3.8 15 13 Tu 1 . + CDS 13813 - 14580 223 ## HCM1.193c hypothetical protein + Term 14750 - 14797 1.2 - Term 14570 - 14609 3.5 16 14 Tu 1 . - CDS 14816 - 15157 110 ## gi|256026212|ref|ZP_05440077.1| hypothetical protein E4_22776 - Prom 15348 - 15407 8.6 + Prom 15071 - 15130 7.1 17 15 Tu 1 . + CDS 15356 - 15583 102 ## + Prom 15607 - 15666 2.2 18 16 Tu 1 . + CDS 15716 - 16958 719 ## ECO111_p1-137 putative transposase Predicted protein(s) >gi|223713503|gb|ACDM01000095.1| GENE 1 60 - 266 181 68 aa, chain - ## HITS:1 COG:no KEGG:ECP_2980 NR:ns ## KEGG: ECP_2980 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_536 # Pathway: not_defined # 1 68 1 68 68 100 75.0 2e-20 MYLKIRDRLGYMSNTSSNFEMAGVLLGKEVRKRKNTSGKNRNYSTDYGAWHDRVPRGAFA WNSAQSVV >gi|223713503|gb|ACDM01000095.1| GENE 2 498 - 1946 540 482 aa, chain + ## HITS:1 COG:no KEGG:RPB_3532 NR:ns ## KEGG: RPB_3532 # Name: not_defined # Def: hypothetical protein # Organism: R.palustris_HaA2 # Pathway: not_defined # 29 367 12 349 792 119 29.0 4e-25 MLKGFDITKAKAQEVDTELLKRRISTGKAIAFTGAGFSLGTKNVLGSTPPMAGELAKKLS LLCNLEESEDLMFAADVALEYADNISVLDLLKDNYTLTSVSECHEKICKLPWKKFFTTNY DNSIELACLNIGKRIESVDLSYKPTNFLKKNNVCLHINGKIESAEPEDLTSKIKLSDSSY LSPDSFVNSDWYYHFKKDLETASAIVFMGYSMYDMDVKKFLFENPELQEKTYFVVRDGAD FKEIFTLRKYGHVLPIGVDRFSDLMKDVQKQSHEDGVIFTETLVKYEVFDTQTDFRDIDS ERLFLYGDYEIEKLHDSIRRIETIPYFIKRDIIPVCLNNIKNNNNIIITGDLGNGKSIVL EMLAYELTVNGFHTYILRNNDGDYVSDLDQIIKHEGTAVIIIDNCSNHPGLIKHIFEVKA DNLIYVFADRNSNDIKFNISLDFIEHNIDLLSSDEIASAVKIIDNLSTWQKFSALSTERK KD >gi|223713503|gb|ACDM01000095.1| GENE 3 2462 - 2941 -23 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256026198|ref|ZP_05440063.1| ## NR: gi|256026198|ref|ZP_05440063.1| hypothetical protein E4_22691 [Escherichia sp. 4_1_40B] # 1 159 1 159 159 294 100.0 1e-78 MDSPHYWVQYAMCRLSFSDYNRAQNYLTNAYQKAETKKGSYHTDNIDTQQARLYLNQCLD HNNSSECYKLFDKAHALLVKLPNEGRKFRQVLLYKKVFDLKYQSFSKKNKTDFEQACKKL LDQTKPDNVYPINTNMVRFITSAEEALIEILNTIMLERT >gi|223713503|gb|ACDM01000095.1| GENE 4 4747 - 5034 403 95 aa, chain - ## HITS:1 COG:YPCD1.96c KEGG:ns NR:ns ## COG: YPCD1.96c COG1484 # Protein_GI_number: 16082779 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Yersinia pestis # 1 92 1 92 143 172 96.0 1e-43 MHELEVLLSRLKMEHLSYHVESLLEQAVKKELNYREFLCMALQQEWNDRHQRGMESRLKQ ARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAAKT >gi|223713503|gb|ACDM01000095.1| GENE 5 5034 - 5513 270 159 aa, chain - ## HITS:1 COG:YPCD1.97c KEGG:ns NR:ns ## COG: YPCD1.97c COG4584 # Protein_GI_number: 16082780 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 159 150 308 308 302 92.0 2e-82 MVKYLKENFFVRYRRFDSFTHVNQLLEQWIADVADKRELRQFKETPEQRFALEQEHLQPL PDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRIYSNEKLVAS HRLCPASSGWQTVPEHHAPLWQQVSQVEHRPLSTYEELL >gi|223713503|gb|ACDM01000095.1| GENE 6 5451 - 5699 85 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256026202|ref|ZP_05440067.1| ## NR: gi|256026202|ref|ZP_05440067.1| hypothetical protein E4_22726 [Escherichia sp. 4_1_40B] # 1 82 1 82 82 151 100.0 1e-35 MSEAVEPAVPDEEVLLEVFHHPLNLTFCSGPAWTACPWQEVIVVGQQQESGVEHDFPVVI LQHRSLLVINQHRFHTTTEFDP >gi|223713503|gb|ACDM01000095.1| GENE 7 5941 - 6582 148 213 aa, chain + ## HITS:1 COG:no KEGG:p1ECUMN_0159 NR:ns ## KEGG: p1ECUMN_0159 # Name: ydiA # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 213 1 213 213 437 97.0 1e-121 MNADTWTRLQAFRHALELTSCEASLTAGYDHLKDFPAGCSELASQTLTDYLTEDGSNLYS CIVGMQWDNGPGRYGHVIAAPARDYIDLTLDQFPGYHNRIVAEPVESGGQLAADLNREPA ISTADGIVASASDKVNYITEQKNRQPMVIITECYKLIRMTARFIPMCQSSQLFQHQIFPR LFIISDVGSCSLSRNTLDRLATDWKVTLSVLSL >gi|223713503|gb|ACDM01000095.1| GENE 8 6450 - 6782 95 110 aa, chain - ## HITS:1 COG:no KEGG:p1ECUMN_0160 NR:ns ## KEGG: p1ECUMN_0160 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 5 110 1 106 106 195 92.0 3e-49 MNILMTGTAAQTPVMDVTEIPAEPQVFQSGTLSTGLELVDTYLWIFKHFMEGKVLTRSLA CLVYIKPYSDRTDSVTFQSVAKRSKVFLDKLQEPTSEMINKRGNIWCWKS >gi|223713503|gb|ACDM01000095.1| GENE 9 7485 - 8399 524 304 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_B0026 NR:ns ## KEGG: ECH74115_B0026 # Name: not_defined # Def: initiator RepB protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 304 22 325 325 561 99.0 1e-159 MALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDF KTWVGIIHSFARHNVIGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISF SRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRE SAQALYTFIESLPRDPAPVSLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQ RGRTKLFCIHYRRPRLKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKL FKSR >gi|223713503|gb|ACDM01000095.1| GENE 10 8678 - 9418 219 246 aa, chain - ## HITS:1 COG:PSLT031 KEGG:ns NR:ns ## COG: PSLT031 COG0582 # Protein_GI_number: 17233417 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 15 240 16 257 260 176 50.0 5e-44 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL TDISYVRQMESWMITTRPRRRAPLWAVTDETMRNWLKQAVKRAEADGVHFSIPVTPHTFR HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR TLPPLK >gi|223713503|gb|ACDM01000095.1| GENE 11 9782 - 9949 109 55 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A3113 NR:ns ## KEGG: SeSA_A3113 # Name: not_defined # Def: RelE/ParE family plasmid stabilization system protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 54 44 97 98 86 72.0 2e-16 MSDNNIGTPRPELVEDIFALPVERHMLYFIQTDTDIIIIRILSQHQDAGRHLNWQ >gi|223713503|gb|ACDM01000095.1| GENE 12 10018 - 10284 249 88 aa, chain - ## HITS:1 COG:STM2955 KEGG:ns NR:ns ## COG: STM2955 COG3609 # Protein_GI_number: 16766261 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 87 24 110 118 132 88.0 2e-31 MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRDLLAEGL SSGEPVAWEKDAFLKKVKAGTRASGENR >gi|223713503|gb|ACDM01000095.1| GENE 13 10564 - 11115 237 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256026209|ref|ZP_05440074.1| ## NR: gi|256026209|ref|ZP_05440074.1| NACHT family-like NTPase [Escherichia sp. 4_1_40B] # 1 183 463 645 645 324 100.0 1e-87 MENTTEELIIPLMQEIGFKEENFSASTLAENFYYKLIGDARVIVQNKELRKDRKSNNNKL ESMHDVSIGPFNDNILNVLAFSDIEKLSTYSLHDIIFDNAITTPSCLKIISGLDKIKSDG IINDKNSMLIDKLLTQAGVKNRVFLVLENLVEDMYNYIYLKSLNHLNMIKKEKESLLGLD NLF >gi|223713503|gb|ACDM01000095.1| GENE 14 12871 - 13482 422 203 aa, chain + ## HITS:1 COG:no KEGG:KPK_B0045 NR:ns ## KEGG: KPK_B0045 # Name: not_defined # Def: transposase # Organism: K.pneumoniae_342 # Pathway: not_defined # 62 203 327 468 469 218 77.0 1e-55 MTALAAEFFTLDEVNRLKIIQDVIDRRLTTQMAAQRLGISDRQCRRLLARYREDGPLGMT SRVSKSLTVQYDKVLYLIEDNEFSRRAIGKYIDVWHYPDGHKELRLNGVSIPYSTYDKLS EIDQGAIVDNKRLGRALEMAQLVQAERDNNRSQSVPSGDGPSRRRKAPTTKKSQRSLDQD DMFNALVKLQTRAEEIFGERNQK >gi|223713503|gb|ACDM01000095.1| GENE 15 13813 - 14580 223 255 aa, chain + ## HITS:1 COG:no KEGG:HCM1.193c NR:ns ## KEGG: HCM1.193c # Name: not_defined # Def: hypothetical protein # Organism: S.typhi # Pathway: not_defined # 54 255 1 202 202 394 100.0 1e-108 MFIDYAVEPFYYDFGINLYEDGGNFSMASMVYYVGPAYYGSAFDDVLLQFQNAMKEKTLD SVSLLISKIRRLDWQRLKEFFGPLAFNHPDCIDAIMTDGISTDASFTILNALISRTEMMS SGEYAIEHDRSKNLLTYNERLNFLINCDKEGEFKHSEIATISFPLNLKKVYQIDSKESPS VQLCDVLIGACIESVYQLMDSKVLNQNSVLSLYQDSQLIHFIPDIDFEGQKKFRKGSQSE EYLTFIQNEIYSSKL >gi|223713503|gb|ACDM01000095.1| GENE 16 14816 - 15157 110 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256026212|ref|ZP_05440077.1| ## NR: gi|256026212|ref|ZP_05440077.1| hypothetical protein E4_22776 [Escherichia sp. 4_1_40B] # 1 113 1 113 113 193 100.0 4e-48 MIDKCYIVSSNNLINRLDPSQIIDSKIYKSFPEKELFNPILIDVIQELRKNDFVRRSSVL HRKLNKIDTITLTYLLDRFDENFLIEQLPNVCMKIEREFHTISYIDQLLRKQV >gi|223713503|gb|ACDM01000095.1| GENE 17 15356 - 15583 102 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTVCLIEIFIYKIPTRNITIIVAESIFALLIPCHIYISDFISLMIFPRIAFPVKFLLTK QSSLWTFELCPTPDI >gi|223713503|gb|ACDM01000095.1| GENE 18 15716 - 16958 719 414 aa, chain + ## HITS:1 COG:no KEGG:ECO111_p1-137 NR:ns ## KEGG: ECO111_p1-137 # Name: not_defined # Def: putative transposase # Organism: E.coli_O111_H- # Pathway: not_defined # 1 414 1 414 465 811 96.0 0 MAINDAGMFTVKEINRLKILQDVIDRNIRPGQAAEMLVITPRHCSRLLKRYRQYGPLGMN NQSRGRTGNRLLPASLTDQALSIIREHYRDFGPTLAREKLEEVHGLVLGKETIRRLMIKA GLWIPRRQRAPKIHQPRYRRPCTGELIQIDGCDHHWFENRGRPCTALVYVDDATSRLMHL LFVKSESTFTYFEATRGYIEKYGKPMILYSDKASIFRVNNKHATTGPGETQFARAMRCLN ITPLCAETSQAKGRVERAHLTLQDRLVKELRLKGICTIEAANAFAEEYMADYNRRFAKEP LHDFNAHRPLALDDDLDAEFTWREPRRVSKNLTVQYDKMLYLIEDNEYSRRAIGKYIDVW HYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGHVLDVARQVQRKRDN Prediction of potential genes in microbial genomes Time: Mon May 16 19:37:48 2011 Seq name: gi|223713502|gb|ACDM01000096.1| Escherichia sp. 4_1_40B cont1.96, whole genome shotgun sequence Length of sequence - 44650 bp Number of predicted genes - 54, with homology - 48 Number of transcription units - 36, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 80 - 118 4.3 1 1 Tu 1 . - CDS 136 - 1425 1063 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 1575 - 1634 2.8 + Prom 1496 - 1555 7.0 2 2 Op 1 31/0.000 + CDS 1714 - 3114 1315 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 3 2 Op 2 . + CDS 3114 - 4124 1048 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 4 2 Op 3 . + CDS 4124 - 4252 100 ## + Term 4416 - 4443 1.2 - Term 4308 - 4341 4.0 5 3 Tu 1 . - CDS 4357 - 5538 1168 ## COG0826 Collagenase and related proteases - Prom 5589 - 5648 3.7 6 4 Tu 1 . - CDS 5990 - 6598 54 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 7 5 Op 1 . - CDS 6917 - 7198 359 ## COG3668 Plasmid stabilization system protein 8 5 Op 2 . - CDS 7195 - 7464 259 ## ECSE_P2-0092 hypothetical protein - Prom 7489 - 7548 4.8 9 6 Tu 1 . - CDS 8380 - 9186 780 ## EcE24377A_C0025 replication protein - Prom 9301 - 9360 3.0 - Term 9470 - 9526 -0.1 10 7 Tu 1 . - CDS 9542 - 9796 157 ## ROD_p1001 negative regulator of repA1 expression - Prom 9929 - 9988 4.0 - Term 10980 - 11016 2.3 11 8 Tu 1 . - CDS 11089 - 11301 86 ## APECO1_O1CoBM62 hypothetical protein 12 9 Op 1 . - CDS 11433 - 11993 446 ## p1ECUMN_0075 conjugal transfer fertility inhibition protein FinO 13 9 Op 2 . - CDS 12048 - 12362 239 ## ECO111_p3-76 conjugal transfer pilus acetylation protein TraX 14 9 Op 3 . - CDS 12214 - 12768 264 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 15 9 Op 4 . - CDS 12824 - 13171 280 ## COG1475 Predicted transcriptional regulators 16 9 Op 5 . - CDS 13230 - 13463 187 ## APECO1_O1CoBM15 hypothetical protein 17 9 Op 6 . - CDS 13519 - 14040 531 ## COG0629 Single-stranded DNA-binding protein - Term 14808 - 14843 4.1 18 10 Op 1 . - CDS 14919 - 15482 420 ## EcSMS35_A0058 hypothetical protein 19 10 Op 2 . - CDS 15529 - 16890 899 ## EcE24377A_E0031 hypothetical protein 20 10 Op 3 . - CDS 16942 - 17172 132 ## EcSMS35_A0060 hypothetical protein 21 11 Tu 1 . - CDS 18008 - 18985 801 ## COG3436 Transposase and inactivated derivatives - Prom 19049 - 19108 1.8 22 12 Op 1 5/0.000 - CDS 19310 - 19570 214 ## COG3436 Transposase and inactivated derivatives 23 12 Op 2 6/0.000 - CDS 19584 - 19931 117 ## COG3436 Transposase and inactivated derivatives 24 12 Op 3 . - CDS 19928 - 20605 354 ## COG2963 Transposase and inactivated derivatives - Prom 20707 - 20766 5.7 25 13 Op 1 . - CDS 20822 - 21814 307 ## ROD_p1471 hypothetical protein 26 13 Op 2 . - CDS 21863 - 22018 169 ## B21_03477 hypothetical protein - Prom 22055 - 22114 4.9 27 14 Tu 1 . - CDS 22349 - 22591 77 ## - Prom 22645 - 22704 1.9 + Prom 22500 - 22559 5.9 28 15 Tu 1 . + CDS 22596 - 23153 538 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 29 16 Tu 1 . - CDS 23253 - 23654 293 ## gi|218511194|ref|YP_002415652.1| hypothetical protein pEC55989_0046 - Prom 23679 - 23738 2.4 30 17 Tu 1 . - CDS 23863 - 25215 375 ## COG3344 Retron-type reverse transcriptase 31 18 Tu 1 . - CDS 25691 - 25888 174 ## COG2963 Transposase and inactivated derivatives - Term 26587 - 26629 1.6 32 19 Op 1 . - CDS 26783 - 27994 91 ## EcE24377A_F0081 hypothetical protein 33 19 Op 2 . - CDS 28006 - 28635 214 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 28019 - 28078 3.7 34 20 Tu 1 . + CDS 28109 - 28318 117 ## 35 21 Op 1 . - CDS 28628 - 29449 259 ## ROD_03471 AatB, putative membrane protein 36 21 Op 2 . - CDS 29346 - 30413 372 ## ROD_03461 AatA, outer membrane protein - Prom 30647 - 30706 7.2 + Prom 30747 - 30806 6.9 37 22 Tu 1 . + CDS 30957 - 31430 -168 ## 38 23 Tu 1 . + CDS 32091 - 32339 121 ## COG2963 Transposase and inactivated derivatives + Prom 32371 - 32430 3.7 39 24 Tu 1 . + CDS 32482 - 32718 112 ## COG2963 Transposase and inactivated derivatives + Term 32847 - 32906 2.0 40 25 Tu 1 . - CDS 32690 - 33439 438 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 33481 - 33540 2.6 41 26 Tu 1 . + CDS 33203 - 33661 101 ## + Term 33669 - 33701 -0.7 - Term 33650 - 33695 2.1 42 27 Tu 1 . - CDS 33777 - 34172 281 ## CP0070 extracellular serine protease SepA + Prom 33832 - 33891 3.7 43 28 Tu 1 . + CDS 34116 - 34340 165 ## 44 29 Tu 1 . - CDS 36006 - 36206 69 ## gi|218511215|ref|YP_002415673.1| hypothetical protein pEC55989_0067 + Prom 36675 - 36734 8.2 45 30 Tu 1 . + CDS 36937 - 37287 82 ## gi|218511217|ref|YP_002415675.1| 14 kDa aggregative adherence fimbriae I protein (Fragment) (modular protein) + Term 37374 - 37416 -0.9 + Prom 38144 - 38203 8.1 46 31 Op 1 . + CDS 38392 - 38925 26 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 38931 - 38990 2.6 47 31 Op 2 . + CDS 39026 - 39430 154 ## COG3677 Transposase and inactivated derivatives + Term 39534 - 39575 4.2 48 32 Op 1 . - CDS 39673 - 40497 251 ## COG3547 Transposase and inactivated derivatives 49 32 Op 2 . - CDS 40524 - 40691 102 ## XBJ1_2220 transposase + Prom 40596 - 40655 3.6 50 33 Tu 1 . + CDS 40728 - 40964 110 ## gi|256026263|ref|ZP_05440128.1| hypothetical protein E4_23031 + Prom 41545 - 41604 4.9 51 34 Tu 1 . + CDS 41714 - 41989 189 ## COG2963 Transposase and inactivated derivatives + Prom 42172 - 42231 9.3 52 35 Tu 1 . + CDS 42263 - 42415 112 ## gi|256026268|ref|ZP_05440133.1| hypothetical protein E4_23056 + Term 42453 - 42511 1.2 53 36 Op 1 . - CDS 42918 - 43457 258 ## COG1443 Isopentenyldiphosphate isomerase 54 36 Op 2 . - CDS 43461 - 44489 364 ## gi|256026270|ref|ZP_05440135.1| hypothetical protein E4_23066 - Prom 44534 - 44593 11.5 Predicted protein(s) >gi|223713502|gb|ACDM01000096.1| GENE 1 136 - 1425 1063 429 aa, chain - ## HITS:1 COG:STM1598 KEGG:ns NR:ns ## COG: STM1598 COG1167 # Protein_GI_number: 16764942 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 1 428 41 468 474 745 87.0 0 MTVGHAYQLLESQGRIIARPQSGYYVAPRPILQPTVQPALVMRDEAVDINTSIFEMLQAS RDASVMPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVLENLPPGNAELRHAIARRYAQ QGITVSPDDIVITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVAT DVKEGIDLAALEQALQDYPVKACWLMTNSQNPLGFTLSPAKKARLVALLDKHNVMLIEDD VYSELYFGREKPLPAKAWDRSDRILHCSSFSKCLVPGFRIGWLAAGKHARTIQRLQLMST LSTSSPMQLALVDYLSTRRYDVHLRRLRRQLAERKQQAWQLLLRHLPADVKIHHNNSGYF LWLELPESMDAGELTAQALAHQISIAPGKMFSTSDTWKRFFRFNTAWQWGESEESAVKQL GQLIREQLK >gi|223713502|gb|ACDM01000096.1| GENE 2 1714 - 3114 1315 466 aa, chain + ## HITS:1 COG:STM0360 KEGG:ns NR:ns ## COG: STM0360 COG1271 # Protein_GI_number: 16763740 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 4 455 3 456 467 749 85.0 0 MFGLDAYHLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKSKNPVWRSLYHFWSKI FAVNFGMGVVSGLVMAYQFGTNWSGFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGW NKVGPGLHFFSTCMVALGTLISTFWILASNSWMQTPQGFEIVNGQVVPVDWFAVIFNPSF PYRLLHMSVAAFLSSALFVGASAAWHLLRGNTTPAIRTMFSMALWMTLIVAPVQALIGDM HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMEQERTRYGLAIPALGSLILTHS LDKQVPALKEFAKEDRPHSTIVFWSFRIMAGLGMLMILLGLCALWLRYRQRLYTSRPFLR FALWMGPSGLIAILAGWVTTEVGRQPWVVYGLQRTADAVSAHGDLHMSISLLAFFVVYSS VFGVGYSYMIRLIRKGLLEDDSAPPPGTPARPLSAAVLDSQHKAHR >gi|223713502|gb|ACDM01000096.1| GENE 3 3114 - 4124 1048 336 aa, chain + ## HITS:1 COG:STM0361 KEGG:ns NR:ns ## COG: STM0361 COG1294 # Protein_GI_number: 16763741 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 336 1 336 336 462 76.0 1e-130 MGIDLSVIWFVIIVFATLMYIVMDGFDLGIGILFPVTRNAEDRDVMVNSVAPVWDGNETW LVLGGAGLFGAFPMAYAVIIDALTIPLTLMLIGLIFRGVAFEFRFKATPAHRPFWDHAFL GGSILATFAQGIVVGAVINGFPVTGRSYSGGPFDWLTPFTLFCGVGLVVAYALLGATWLV MKSENPLQDKMRSVAKKLLLALLLSIAIISLWTPLAHPAIADRWFTLPNLGYLLPVPVLV IAFSVWLWRTLGRPENHTFPFVLTLGLIFLGFSGLGISIWPHIIPPSVTLWQAAAPAQSQ GFMLVGALLIIPVILVYTFWSYYVFRGKVQHGEGYH >gi|223713502|gb|ACDM01000096.1| GENE 4 4124 - 4252 100 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQHSLWKRLMWLVILWGGSVLALAAVGMFFRLLMTAAGFKAH >gi|223713502|gb|ACDM01000096.1| GENE 5 4357 - 5538 1168 393 aa, chain - ## HITS:1 COG:ECs2039 KEGG:ns NR:ns ## COG: ECs2039 COG0826 # Protein_GI_number: 15831293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1 392 275 666 667 746 89.0 0 MLDAIIEDRSDLARASSGRTEHFFIPFTDKTFHRGSTDYFVNARKGDIGAFDSQKFIGLP VGEVLKVAKDHLDVEASEPLANGDGLNVLIKHEVVGFHANTVEKIGENSYRVWPNEMPAD LHKVRPRHPLNRNLDHNWQQALTKTSSERRVAMDIELGGWQEQLILTLTSEEGVSVTHTL DGQFDDANNAEKALSNLKNVLAKLGQTLYYARDIQVNLPGALFVPNGLLNVFRREAIEML DKARLARYKRGVRKSVSDPAPVYPQTHLSFLANVYNQKAREFYHCYGVQLIDAAYEAHQE KGDVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIG KIKDHILKMPLPGSVVGSVSPEDLMKTLPKRKP >gi|223713502|gb|ACDM01000096.1| GENE 6 5990 - 6598 54 202 aa, chain - ## HITS:1 COG:PSLT049 KEGG:ns NR:ns ## COG: PSLT049 COG0847 # Protein_GI_number: 17233424 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Salmonella typhimurium LT2 # 2 65 63 126 138 79 62.0 3e-15 MARQAYDWLSLAPLFLDTETTGLDNTAKALEIGLTDATGQVVFETRLKPTVAIGAQAAAV HGISEQALCGAPSWTDVARQLRHAIGDRPVIIFNARFDIRILKQTAAAHSDPADWLEELT VYCAMELAAGYYGGPPGIRKINHVKTAFYPNDFQESPRWRDNSGFGVLNRTILYILTREC TEVSQTVIGRSEHFVQPLRSVS >gi|223713502|gb|ACDM01000096.1| GENE 7 6917 - 7198 359 93 aa, chain - ## HITS:1 COG:SMa0473 KEGG:ns NR:ns ## COG: SMa0473 COG3668 # Protein_GI_number: 16262701 # Func_class: R General function prediction only # Function: Plasmid stabilization system protein # Organism: Sinorhizobium meliloti # 2 93 1 91 97 60 41.0 7e-10 MMEIFWTMLASLDRKRIRENIAEQNLMAAIELDERIGYSASSLAGQPYKGRNGRVEGTRE LVIHPHFVLVYEVDSQWGKVYILRVLHTAQKWP >gi|223713502|gb|ACDM01000096.1| GENE 8 7195 - 7464 259 89 aa, chain - ## HITS:1 COG:no KEGG:ECSE_P2-0092 NR:ns ## KEGG: ECSE_P2-0092 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 89 1 89 89 141 97.0 6e-33 MAQVNMSLRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQHNTWFRDQVTAGRQQL EHGDVLPHDMVESSAAAWRDEMSRKVAGK >gi|223713502|gb|ACDM01000096.1| GENE 9 8380 - 9186 780 268 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_C0025 NR:ns ## KEGG: EcE24377A_C0025 # Name: repA # Def: replication protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 268 18 285 285 449 97.0 1e-125 MFTPREGAGTLKFCEKLMEKAVGFSSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALLQ GLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTSLSELGLITYQTEYD PLIGCYIPTDITFTLALFAALDVSEDAVAAARRSRVVWENKQRKKQGLDTLGMDELIAKA WRFVRERFRSYQTELKSRGIKRARARRDAGRERQDIVTLVKRQLTREISEGRFTASREAV KREVERRVKERMILSRNRNYSRLATASP >gi|223713502|gb|ACDM01000096.1| GENE 10 9542 - 9796 157 84 aa, chain - ## HITS:1 COG:no KEGG:ROD_p1001 NR:ns ## KEGG: ROD_p1001 # Name: repA2 # Def: negative regulator of repA1 expression # Organism: C.rodentium # Pathway: not_defined # 1 84 1 84 84 125 97.0 4e-28 MSQTENTVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMC NEDGLTQAEVLTALIKSEAQKRCM >gi|223713502|gb|ACDM01000096.1| GENE 11 11089 - 11301 86 70 aa, chain - ## HITS:1 COG:no KEGG:APECO1_O1CoBM62 NR:ns ## KEGG: APECO1_O1CoBM62 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 70 1 70 70 80 92.0 2e-14 MNGFRNSSRNGQVWRWQRAGSRAVILEVSGRWMEAAEAWRRAAGVAPRTDWQQFARKRAE HCHRRSRGRV >gi|223713502|gb|ACDM01000096.1| GENE 12 11433 - 11993 446 186 aa, chain - ## HITS:1 COG:no KEGG:p1ECUMN_0075 NR:ns ## KEGG: p1ECUMN_0075 # Name: finO # Def: conjugal transfer fertility inhibition protein FinO # Organism: E.coli_UMN026 # Pathway: not_defined # 1 186 1 186 186 313 96.0 2e-84 MTEQKRPVLTLKRKTEGETPVRSRKTIINVTTPPKWKVKKQKLAEKAAREAELAAKKAQA RQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRDVLLEDVAQRNIPLSHKKL RRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEAYAAARLDKIRRQNRIKAELQ AVLDEK >gi|223713502|gb|ACDM01000096.1| GENE 13 12048 - 12362 239 104 aa, chain - ## HITS:1 COG:no KEGG:ECO111_p3-76 NR:ns ## KEGG: ECO111_p3-76 # Name: not_defined # Def: conjugal transfer pilus acetylation protein TraX # Organism: E.coli_O111_H- # Pathway: not_defined # 1 104 145 248 248 178 98.0 5e-44 MALWGPLSGTSYGIAGLLMLAVSHRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVA GLLMTVLTVGLVSCAGKSLPRFWPGDFFPVFYACHLAVLGVLAL >gi|223713502|gb|ACDM01000096.1| GENE 14 12214 - 12768 264 184 aa, chain - ## HITS:1 COG:PSLT108 KEGG:ns NR:ns ## COG: PSLT108 COG0507 # Protein_GI_number: 17233470 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Salmonella typhimurium LT2 # 1 131 547 677 1752 210 81.0 1e-54 MAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQ AILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHD RYVIDRVAYSSGHSSDGPVGALVRHQLRHCRAADAGSQPPAVPGGRQSGTSGAGRLPAGC YSGA >gi|223713502|gb|ACDM01000096.1| GENE 15 12824 - 13171 280 115 aa, chain - ## HITS:1 COG:PSLT068 KEGG:ns NR:ns ## COG: PSLT068 COG1475 # Protein_GI_number: 17233437 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 5 107 9 110 665 121 65.0 3e-28 MPVTKCEPETTRKASLKSVKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESV SELAESIKGVGLLQNLVVHTLPGDRYGVAAGGRRLAALNMLAERGIIPAGRCRTS >gi|223713502|gb|ACDM01000096.1| GENE 16 13230 - 13463 187 77 aa, chain - ## HITS:1 COG:no KEGG:APECO1_O1CoBM15 NR:ns ## KEGG: APECO1_O1CoBM15 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 77 10 86 86 148 94.0 5e-35 MSEYFRIFQGLPDGSFTREQAEAVAAQYRNVFIEDDQGTHFRLVARQDGTLIWRSWNFED CAGYWMNRYIRDFGILK >gi|223713502|gb|ACDM01000096.1| GENE 17 13519 - 14040 531 173 aa, chain - ## HITS:1 COG:BU545 KEGG:ns NR:ns ## COG: BU545 COG0629 # Protein_GI_number: 15617138 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Buchnera sp. APS # 1 173 1 171 171 179 55.0 2e-45 MAVRGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTEWHRVVL FGKLAEVAGEYLHKGEQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNA QAQPKPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQQPSEPAYDFDDDIPF >gi|223713502|gb|ACDM01000096.1| GENE 18 14919 - 15482 420 187 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_A0058 NR:ns ## KEGG: EcSMS35_A0058 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 187 1 187 187 366 98.0 1e-100 MHSQLRERIRLMRARLDNVAPVAEIRAESQLFVTPAPVCDRLVTLAEISNRDHILEPSAG TGAILRAIRDTAPEAMCDAVEINSGLVRYLRENFNGVRVQCGDFMEWQPVQYYSRVIMNP PFSHGQDIRHILRAFSLLRPGGVLVAVCLNGPRQQEKLLPFSDVREELPRGTFAYTDVPT MIIRLRA >gi|223713502|gb|ACDM01000096.1| GENE 19 15529 - 16890 899 453 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_E0031 NR:ns ## KEGG: EcE24377A_E0031 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 453 1 453 453 850 99.0 0 MTLAAITMTAPEAASPVQMYRATYSPDDNKLRLYAASRLDPETYKKVHDAGFRWAPKQAL FVAPAWTPGREDVLLSLAGEIEDEDSTLAERQEARAERFTGYSGKRASESAQALDEVERL AAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFERAEYWEERARSALLHAKYKER PDVRWRRIKKIEADLRKAEKTIAQSQKYLTMWRAESLDLNMAKLISSHDHISACFPLDTY PRPAEKSQYEGSRSLWSALDDDIITTEQAREIAIRCHERQIQHQQRWVNHYQNRLIYERA MLDESGGVVTRTQDFEPGGQVFSRGEWLTIIRVNKSNGAVSSVTTPNYSFLGYSGTMKVT PDRITDYKAPSAEEAAVASQAAKRPPVVNYPGEGFREMTKAQWAALPRDCKAVRSVAETE DHGAYRYRRTMDNNFRLVNVYITDMKITEIPQK >gi|223713502|gb|ACDM01000096.1| GENE 20 16942 - 17172 132 76 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_A0060 NR:ns ## KEGG: EcSMS35_A0060 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 76 1 76 76 128 100.0 7e-29 MTVSIVSPSAAAVKPRRHPRFRREDIPAPEIDPVLKAFGRHIARSFHRGRGVHIPAMKNT AFGQVLRTLELKRAFN >gi|223713502|gb|ACDM01000096.1| GENE 21 18008 - 18985 801 325 aa, chain - ## HITS:1 COG:ECs3848 KEGG:ns NR:ns ## COG: ECs3848 COG3436 # Protein_GI_number: 15833102 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 273 194 468 482 545 95.0 1e-155 MAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRPLYDELKHYVLMPGKVHAD DTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYSPDRKGIHPQQHLADYRGI LQADAYAGYNALYESGQVTEAACMAHARRKIHDVHVRHPTTVTGEALRRIGALYAIESEI CGSPAEERLAVRKARTVPLMQSLYEWLQGQMSTLSRHSDTAKAFTYLLKQWDALNEYCRN GWVEIDNNLCENALRVVALGRRNYMFFGSDGGGESAAVMYSLIGSCKLNGIEPETWLRHV ISVINTWPANRVKELLPWNVTLSVN >gi|223713502|gb|ACDM01000096.1| GENE 22 19310 - 19570 214 86 aa, chain - ## HITS:1 COG:ECs3848 KEGG:ns NR:ns ## COG: ECs3848 COG3436 # Protein_GI_number: 15833102 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 3 86 1 84 482 152 98.0 1e-37 MGMNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGRSSEK SREKIEKKIARAETRITELQNRLGEA >gi|223713502|gb|ACDM01000096.1| GENE 23 19584 - 19931 117 115 aa, chain - ## HITS:1 COG:ECs3847 KEGG:ns NR:ns ## COG: ECs3847 COG3436 # Protein_GI_number: 15833101 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 115 1 115 115 223 96.0 6e-59 MITLPTGTRIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRNGKMVKILWAD RDGLCLFAKRLERGRFVWPVTREGKVHLTPALLSMLLEGIAWQHPKRTELPGIRI >gi|223713502|gb|ACDM01000096.1| GENE 24 19928 - 20605 354 225 aa, chain - ## HITS:1 COG:Z4315_2 KEGG:ns NR:ns ## COG: Z4315_2 COG2963 # Protein_GI_number: 15803508 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 92 225 1 134 134 211 76.0 8e-55 MNSQTAKDITGFRSYLPDALRLRFDEQLSVRAIALQLGLSHSTIHNLFQRFNASGITWPL PESLSVAQLDAILYANRKKELPDDPQISESTWRKERRTSYSREFKIRLVKQALQPGAVVA RIAREHNINDNLLFNWKRLYEEGLLNDEDLQECQAVPVAITETPDPVKPVTNPFWRNKSD ESQNDTTVDSPQCELHLKSGVVKLFAPLTPELLRVLIREMKGGIR >gi|223713502|gb|ACDM01000096.1| GENE 25 20822 - 21814 307 330 aa, chain - ## HITS:1 COG:no KEGG:ROD_p1471 NR:ns ## KEGG: ROD_p1471 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 330 1 330 330 671 96.0 0 MPVQDVIPPYEQMYLLNQQLICNADQLKHAVITVGGQAVQYWISYYHAQYGDRLPDERLT TSVDCDYSARKDDIAAIAKTLNVKTWENKDGQPPSLAQFMLIDQDTHDIKRDDGRLFAVP DAPDEPNVVDIIDRPGGFDRSDFLGEKLYLHTAPFYVEATGPSMPEMNEKVRVLNPIACM RSRFSNLIALRRDAEIEIARINALKIPCYFFLIEQFDEQPFKVARGIFMDLWRLANDESC LRHQTFWHSWQGPLLEGQQSNNITLVDVLEGVHAFLEGHLDDFEIPEAFVTKELPIKLAQ LRERWERYVILNAEWAARGRRGFERNHRDD >gi|223713502|gb|ACDM01000096.1| GENE 26 21863 - 22018 169 51 aa, chain - ## HITS:1 COG:no KEGG:B21_03477 NR:ns ## KEGG: B21_03477 # Name: ybl167 # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 51 1 51 51 63 100.0 2e-09 MSPAQAKQKQHERYEAVAVQVLRGRAGYKPAVKSRFSKSANSKFSHTIAFA >gi|223713502|gb|ACDM01000096.1| GENE 27 22349 - 22591 77 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPKSNIGQLVSVIIKNRFNRHINGTVFICLIIYDISDSDFTNVRFRSIGLQTPEFIRTS YGYVTGSDFSRQTAISLLSG >gi|223713502|gb|ACDM01000096.1| GENE 28 22596 - 23153 538 185 aa, chain + ## HITS:1 COG:YPCD1.91 KEGG:ns NR:ns ## COG: YPCD1.91 COG1961 # Protein_GI_number: 16082774 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Yersinia pestis # 1 183 1 183 183 254 80.0 6e-68 MRLFGYARVSTSQQSLDIQIKALKDAGVKANRIFTDKASGSSTDRDGLDLLRVKVEKGDV ILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERR RILERTNEGRQDAKMKGIKFGRKRSVDRGSVLALHQKGTGATEIARQLSIARSTVYKILE EGKAE >gi|223713502|gb|ACDM01000096.1| GENE 29 23253 - 23654 293 133 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|218511194|ref|YP_002415652.1| ## NR: gi|218511194|ref|YP_002415652.1| hypothetical protein pEC55989_0046 [Escherichia coli 55989] # 1 133 1 133 133 259 100.0 4e-68 MSRAELLRDIEAIISGAGFELSNSEAPMTFKKNVSYPGLIAGKNEIAHFLLFTNTGTVQI TAKWQEVSGTAIEKLGHTVLDAQHTQHQSYFVVCGGGKLVTRAIDYLNAHRTLAPRLRAM QVKELESALEEII >gi|223713502|gb|ACDM01000096.1| GENE 30 23863 - 25215 375 450 aa, chain - ## HITS:1 COG:BH0039 KEGG:ns NR:ns ## COG: BH0039 COG3344 # Protein_GI_number: 15612602 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 43 450 1 408 418 409 53.0 1e-114 MQQKTYRDPDAGRRGEAPDAGSQGAETVQAPTTRESPSSTAWLMEAICEPVNLRHALKRV KANKGAAGADGMSVSELPDYLRHHWPELKAQLLSGSYRPSPVRRVTIPKPGGGERLLGIP TVVDRFIQQAMMQVLQAQWDATFSDSSYGFRPGRSAHQAVKQAQKYIESGYSWGVDLDLE KFFDRVNHDVLMSRIAKRVSDKRVLSLIRGYLNAGVMEAGLVMPVTEGTPQGGPLSPLLS NLLLDDFDKELEKRGLKFARYADDCNVYVKSERAGNRMMAGLTHWLNRKLKLKLNAKKSA VALPETRKFLGYSFRRGRKVWCVVSPESVKRFKTRIRELTGRNTGKSLEQLIEPLKRYLT GWKSYYGLNQWQTLMRDLNRWIRRRLRSVLWKQWKTGSKRFKELRRRGVSKDLAAQTVGS CHKQWRISCSPALSIALPNRLFVRLGLPEL >gi|223713502|gb|ACDM01000096.1| GENE 31 25691 - 25888 174 65 aa, chain - ## HITS:1 COG:yi21 KEGG:ns NR:ns ## COG: yi21 COG2963 # Protein_GI_number: 16132093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 54 16 69 136 96 96.0 1e-20 MIDVLGPEKRRRRTTQEKSAIVQQSFEPGMTASLVARQHGVAASQLFLWRKQYQGAEGQW NENVR >gi|223713502|gb|ACDM01000096.1| GENE 32 26783 - 27994 91 403 aa, chain - ## HITS:1 COG:no KEGG:EcE24377A_F0081 NR:ns ## KEGG: EcE24377A_F0081 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_E24377A # Pathway: not_defined # 16 403 36 428 428 214 34.0 4e-54 MKFAIVLLYFFAYYLAARKRRVSLFFTILLYSIIFSGMYFSSGFLEYYGSSNLYLSFGLL CFNMITLVIYGFLSSYGVLGACLHALSLTSLSAFGMFIPLNPLIVLYYDFPDILPRTDIP VLNLLILNLIPAVTFSLKISFFLRSLMLLLFPLIWKTPVNITHPPLNIVIVQVGLYFKKV GVRGNFYTDLNEFVRNKKVDLVILSENVFFGYKNDYIKERTKHLLKQLKDNRFHYKYGIL MNLYGYQDINNVVSAFWHKEEFLLHQKSKLIPFFEKKSFYNSPEPSTSPFLYYKKKYNEQ DILDFNNIKMSIHICYEGLFPEGESRRKDISIVQSDYSWLSDNHKYDNTLINGSILSKFS VSPNTPLINIQNYGGTVLIDKNWKIDMDLFNRSKTEPFLFTQI >gi|223713502|gb|ACDM01000096.1| GENE 33 28006 - 28635 214 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 199 1 204 245 87 27 2e-16 MIRVKIHKKPIENRTILNNSTIEIKEGSFNIITGPSGVGKTSLLNIIGLLDNAFVGEYEF FGKKVEIKDNSITTYIRRKYFGFIFQDSLINVKQNVSRNILCSVDSQNIIAARERINDIL VSVGLSNINNNVSFLSGGEKQRLALARALIKKPSILLADEPTASLDIKNKKLVMNILSEY NNQGGTVVMVTHDLELIDENMTLIQLLNT >gi|223713502|gb|ACDM01000096.1| GENE 34 28109 - 28318 117 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFITNFLFFISRLAVGSSAKSILGFFINALASASLCFSPPERNDTLLLIFDNPTDTKISL ILSLAAIMF >gi|223713502|gb|ACDM01000096.1| GENE 35 28628 - 29449 259 273 aa, chain - ## HITS:1 COG:no KEGG:ROD_03471 NR:ns ## KEGG: ROD_03471 # Name: aatB # Def: AatB, putative membrane protein # Organism: C.rodentium # Pathway: not_defined # 1 273 1 270 270 187 42.0 2e-46 MKQKMNFRKLDMRLNIIVYIIIFFCSTFPIQGKCDNYYGVLHGSKNVKYKSPFAGVVILE DMIEGNVVTVERKLFSVLNHEYTAKKDIVAMKRDMEEKKLARLKGVKTHSTSMFSKGLIS RESLHDIDEKISNTELTIMGLDIESKNLEQLLKLSSPFLHTPFIIRNIFVTNEQYVNAGD DIMSVELLDNFYIDVKFDPVSITGNIRDKRIRYRSLVNSLMGTATVVKNIRASGESTQGE DTSGLRSITLLIDGDRNELSNLLDTAFEIIIDD >gi|223713502|gb|ACDM01000096.1| GENE 36 29346 - 30413 372 355 aa, chain - ## HITS:1 COG:no KEGG:ROD_03461 NR:ns ## KEGG: ROD_03461 # Name: aatA # Def: AatA, outer membrane protein # Organism: C.rodentium # Pathway: not_defined # 2 345 58 401 402 179 32.0 2e-43 MLPDINIGLGQYINNNQWFSSITDSHFYLSLSYNLLSAYEAKMQNNKLDIANYLKYIEML SERNNYIINLFSEIINYKIKKSHLMLMLERYRKLNKEYEIAKRKMSIGLISALDVEMIYN ILQKIRFDIDVLEEEESLLSDKISREYHVPESAIPDITYHKLKECKTADFYTLLAENKKL KIKAADIDNDIRKLSEIPSFYLSFGLTPKQGGALGNMSLRKMDYSASLGISFPLMGLFSS SVNQKEKIISMSRTRNESLKENIKLDLLEKEIRQKIDRLEKNLAMMKNELTLKKRKVEYI NYRLKNGQDDVITYLSSVENLHETENEFQKIGYEIEYYSLYHYFLLQHISNTGKM >gi|223713502|gb|ACDM01000096.1| GENE 37 30957 - 31430 -168 157 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSNENRSNTLSTASLAFKDVTISNFLISLSYKTLFTLFISLFVTMLSRKILTALTLLSSF ILNIVSSGMKMCSSDWFAFNPRLSRKSVFEFNLTPIILNGTPLINICFLLKNGLDSLTIA TLPLYLSFKSPEYSVFNPSLSIPLTENSSPEKGVSLT >gi|223713502|gb|ACDM01000096.1| GENE 38 32091 - 32339 121 82 aa, chain + ## HITS:1 COG:Z1199 KEGG:ns NR:ns ## COG: Z1199 COG2963 # Protein_GI_number: 15800720 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 1 66 1 68 108 115 82.0 1e-26 MTKNTRFSPEVSHRAIRMVLESQGEYDSQWAVICSIAPKIGCTPETLHVWVRQHERDRVG GGITPAVLSHHRTCGSAYGGLC >gi|223713502|gb|ACDM01000096.1| GENE 39 32482 - 32718 112 78 aa, chain + ## HITS:1 COG:ECs1337 KEGG:ns NR:ns ## COG: ECs1337 COG2963 # Protein_GI_number: 15830591 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 69 22 90 141 100 75.0 7e-22 MVKLALQPRDSVARIAREHDINDNLLFKWLRIWLIKGRISRRLPLTNSSGIGVELLPVEM TLDERPYPVFTRGNYEDQ >gi|223713502|gb|ACDM01000096.1| GENE 40 32690 - 33439 438 249 aa, chain - ## HITS:1 COG:NMB0700 KEGG:ns NR:ns ## COG: NMB0700 COG3468 # Protein_GI_number: 15676598 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis MC58 # 8 192 351 536 1815 191 56.0 1e-48 MHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGGGYLQFAGDYRGSALNGQTWMGGGIIT DKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNIGGLKVGDGTVILNQQADADGKVQAF SSVDIASGRPTVVLSDSQQVNPDNISWGYRGGRLDLNGNNLTFTRLQAADYGAIITNNSE KKSTVTLDFQTLKASDINVPVNTVSIFGGKGTPGDLYYDTSTGQYYILKVQQFMHTVRRL VIDLHNYLA >gi|223713502|gb|ACDM01000096.1| GENE 41 33203 - 33661 101 152 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQVITGNSVHLPQNVGSFIGDNPAPHPCLAVQGGPPVIAGKLQIPAPLINGILQNDLAII AGEQEVFSCVQVISFLSMHIPGRVSLSQCAGAISCIIFPLQYSLTRGVGYGFVKIILRLL TKEILSGDDSVISIVSSRGKYANQYPFFCRES >gi|223713502|gb|ACDM01000096.1| GENE 42 33777 - 34172 281 131 aa, chain - ## HITS:1 COG:no KEGG:CP0070 NR:ns ## KEGG: CP0070 # Name: sepA # Def: extracellular serine protease SepA # Organism: S.flexneri # Pathway: not_defined # 1 110 103 212 1364 191 90.0 9e-48 MTDFSSATITTGSLPPGNHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTTVGTNNNSGLD IKTRRLSKLVTEVAPAEVSDVGAVSGAYQAGGRFTAFYRLGGGCSTSKTKMVIAPMCIPM ADFLLGEPSAR >gi|223713502|gb|ACDM01000096.1| GENE 43 34116 - 34340 165 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVSRRQATGSNSGTTEISHRGFIKFTDQMALLAVNENIRGPRRKLTFILGKVAEYLIRDL CTDRCRQSWSCRRK >gi|223713502|gb|ACDM01000096.1| GENE 44 36006 - 36206 69 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|218511215|ref|YP_002415673.1| ## NR: gi|218511215|ref|YP_002415673.1| hypothetical protein pEC55989_0067 [Escherichia coli 55989] # 1 66 7 72 72 115 100.0 1e-24 MKAGKNFHSLSKQAASAEKNMDLALAFELWKLASLFCKKIENIEWCMNRAMFCEAYISRN QDGQKL >gi|223713502|gb|ACDM01000096.1| GENE 45 36937 - 37287 82 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|218511217|ref|YP_002415675.1| ## NR: gi|218511217|ref|YP_002415675.1| 14 kDa aggregative adherence fimbriae I protein (Fragment) (modular protein) [Escherichia coli 55989] # 1 116 1 116 116 211 100.0 2e-53 MKKIKFVIFSGILGISLNAFAGGSGWNADNVDPSQCIKLSGVQYTYNSGVPVCMQGLNEG KVRGVSVSGVFYYKDGTTSNFKGVVTPSTPVNTNQDINKTNKVGVQKYSALTEWVK >gi|223713502|gb|ACDM01000096.1| GENE 46 38392 - 38925 26 177 aa, chain + ## HITS:1 COG:ECs4395 KEGG:ns NR:ns ## COG: ECs4395 COG2207 # Protein_GI_number: 15833649 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 29 170 93 233 242 84 36.0 9e-17 MIIYGISKVDACSCPNWSKGIIVADADDSVLDTFKSIDHNDDSRITSDLIYLISKIENNR KIIESIYISAVSFFSDKVRNTIEKDLSKRWTLAIIADEFNVSEITIRKRLESEYITFNQI LMQSRMSKAALLLLDNSYQISQISNMIGFSSTSYFIRLFVKHFGITPKQFLTYFKSQ >gi|223713502|gb|ACDM01000096.1| GENE 47 39026 - 39430 154 134 aa, chain + ## HITS:1 COG:YPO0981 KEGG:ns NR:ns ## COG: YPO0981 COG3677 # Protein_GI_number: 16121285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 65 1 65 87 98 64.0 3e-21 MSSVNIHCPRCQSAQVYRHGQNPKGRDRFRYRDCHRVFQLTYTYQARKPGMKELITEMAF NEPGMMLARMARLHGIQPCQLFKWKKQYLEGTLNAVAAGEDVVPASELAAAIKQINQVQR LLGKNLWSPPFLQH >gi|223713502|gb|ACDM01000096.1| GENE 48 39673 - 40497 251 274 aa, chain - ## HITS:1 COG:PA0445 KEGG:ns NR:ns ## COG: PA0445 COG3547 # Protein_GI_number: 15595642 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Pseudomonas aeruginosa # 2 272 61 335 338 200 44.0 2e-51 MARRIADLGHEAKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEAQQAMR ALHRVRESLVSDKVKTTNQMHAFLLEFGISMPTGVAVVKRLSTVLAENELPPYLAQLLMR LHAHYIYLVGQITELEIALEQELSRDEVGQRLQTIPGIGPITASVLSSQLGDGKQYSCSR DFAASTGLVPRQYSTGGKNTLLGISKRGDKNLRRLLVQCARSFIQRIENQSGRLADWVRA LLARKHSSVVCCALANKLARIAWAITTQQTVFER >gi|223713502|gb|ACDM01000096.1| GENE 49 40524 - 40691 102 55 aa, chain - ## HITS:1 COG:no KEGG:XBJ1_2220 NR:ns ## KEGG: XBJ1_2220 # Name: not_defined # Def: transposase # Organism: X.bovienii # Pathway: not_defined # 6 51 1 46 334 72 67.0 5e-12 MEKTIMQNITLIGIDLGKHSFHIHCQDKSGKVLLRKSLPVPNLLSFWQAVPRLPL >gi|223713502|gb|ACDM01000096.1| GENE 50 40728 - 40964 110 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256026263|ref|ZP_05440128.1| ## NR: gi|256026263|ref|ZP_05440128.1| hypothetical protein E4_23031 [Escherichia sp. 4_1_40B] # 9 78 1 70 70 129 100.0 9e-29 MVGTISLTMEVEILREAVEYAQSQMDNVCVLVIFGQGIASVSRVLGDRAGGGIIPAVLSL FVHRKPPARLGVPESFQL >gi|223713502|gb|ACDM01000096.1| GENE 51 41714 - 41989 189 91 aa, chain + ## HITS:1 COG:ECs1381 KEGG:ns NR:ns ## COG: ECs1381 COG2963 # Protein_GI_number: 15830635 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 91 18 108 108 157 95.0 5e-39 MVLESQGEYDSQWAVICSIAPKIGCTPEILRVWVRQHERDTEGGDGGLTTAERQRLKELE RENRELRRSNDILRQASAYFAKAEFDRLWKK >gi|223713502|gb|ACDM01000096.1| GENE 52 42263 - 42415 112 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256026268|ref|ZP_05440133.1| ## NR: gi|256026268|ref|ZP_05440133.1| hypothetical protein E4_23056 [Escherichia sp. 4_1_40B] # 1 50 1 50 50 76 100.0 6e-13 MIDIVTYVMNADFDNIIKIASDMDLSLIKDIVRETQEDINSNGPAWSSWS >gi|223713502|gb|ACDM01000096.1| GENE 53 42918 - 43457 258 179 aa, chain - ## HITS:1 COG:SPBC106.15 KEGG:ns NR:ns ## COG: SPBC106.15 COG1443 # Protein_GI_number: 19111956 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Schizosaccharomyces pombe # 1 157 18 198 227 92 36.0 3e-19 MENVILIDHNDCETGIAEKLYTHKKGILHRAVSVYICNSDGKLLLQQRALGKYHSPGLWS NTSCTHPFPGESNLSAANRRLREEMGIECPLSKLLKIYYNVYVGGDLTEHEIAHIFYGIS DDEPDLNSLEAMSYKYVSLTELSSEIKFNNDAFSRWFVYCFPYIKNAFLNESNYTNLLI >gi|223713502|gb|ACDM01000096.1| GENE 54 43461 - 44489 364 342 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256026270|ref|ZP_05440135.1| ## NR: gi|256026270|ref|ZP_05440135.1| hypothetical protein E4_23066 [Escherichia sp. 4_1_40B] # 1 342 1 342 342 633 100.0 1e-180 MKVVSDSFNDMHKRRYFNDTMDIINYNRKTIRYTDIIFYFRTLKKIRLKYPFKELESLFE PLNVYPFYYFMPFLFISDLHDKGQYIERIRYVGIISTLIARRAILTDLFVDEQYEQLISR NMGDLKKEYLGYYLQIIDVEINNIASKIFIEPSSFYAFYNRRFNEYVNTMLMEKDISPLI GMDEGAFKKYAVGKSILHLLVSDMVLHIIKKQELTHQFDNMMKSFIMYLTLQDDVLDIME DIQKQQPSHFYPWISDGKIIESIDENVEKAVLLKFYLGGGIERCEDLINKYVEDIITAVK KINHPLKSWLEVIERMSLKTKDKLDSFKAVRDELHFFLSQQG Prediction of potential genes in microbial genomes Time: Mon May 16 19:39:50 2011 Seq name: gi|223713501|gb|ACDM01000097.1| Escherichia sp. 4_1_40B cont1.97, whole genome shotgun sequence Length of sequence - 4712 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 411 - 926 175 ## gi|260279121|dbj|BAI44131.1| adhesin protein - Prom 972 - 1031 6.4 3 2 Op 1 . - CDS 1101 - 1538 81 ## gi|256026273|ref|ZP_05440138.1| Protein Agg3B, putative invasin 4 2 Op 2 10/0.000 - CDS 1555 - 2094 187 ## COG3188 P pilus assembly protein, porin PapC - Prom 2133 - 2192 2.7 5 2 Op 3 . - CDS 4159 - 4446 188 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 4514 - 4573 4.7 Predicted protein(s) >gi|223713501|gb|ACDM01000097.1| GENE 1 25 - 330 190 101 aa, chain - ## HITS:1 COG:ECs2225 KEGG:ns NR:ns ## COG: ECs2225 COG3328 # Protein_GI_number: 15831479 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 55 1 55 140 100 89.0 9e-22 MDEKQLQALANELAKNLKTPEDLSQFDRLLKKLCVEAALNAEMTHHLGYEKNQSRSLFKI LCKCLVSEVTVQAVTELDNKAAHCHSPVLQRHRPFPGRRLD >gi|223713501|gb|ACDM01000097.1| GENE 2 411 - 926 175 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260279121|dbj|BAI44131.1| ## NR: gi|260279121|dbj|BAI44131.1| adhesin protein [Escherichia coli O111:H21] # 1 171 1 171 171 257 88.0 2e-67 MKKISIIASLVFSLYSGLSIAANPTPSSLTSKATGKSIVSSTGTITISNSCSLSISSPNP VTYTIPTDRADKYINFQLDVPDPRCKALGGTVYFWGADAKDGKLVMVKGNDRYTLMTTYG GSVQQKLGAGYGYYHVSKNTTPQTISGVVSRNGPYKPGQYTVELTGFFSLN >gi|223713501|gb|ACDM01000097.1| GENE 3 1101 - 1538 81 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256026273|ref|ZP_05440138.1| ## NR: gi|256026273|ref|ZP_05440138.1| Protein Agg3B, putative invasin [Escherichia sp. 4_1_40B] # 1 145 1 145 145 286 100.0 4e-76 MKKGIVSLSCGACLMVVSSLSAAAEINLVSHRNTESQLRDGMKLATGRMTCRETHTGFHV WMNARQDGGRPEHYIVQNSKGIQHELRVRIGGNGWISSFGEAQRGIFRLGKEEQAIFDVI VDGDQKVIPGEYMLSISGECIVLGR >gi|223713501|gb|ACDM01000097.1| GENE 4 1555 - 2094 187 179 aa, chain - ## HITS:1 COG:STM0301 KEGG:ns NR:ns ## COG: STM0301 COG3188 # Protein_GI_number: 16763684 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 1 178 662 835 836 180 50.0 1e-45 MHSEGITFGQRFGDTMALIAAPGVRGASIGGWPGVSTDSRGYALVSYITPYQENIITLDP TTFPENAEVLQTDTRVVPTKGAVVRAKFKTRVGNRAVVRLARADGTPLPFGTVVTLEGKT EVSNSTGVVDDKGMVYLSGLSEAGKLKAQWGMNSHCYANYRLPVKKGPAGLYLTSAVCI >gi|223713501|gb|ACDM01000097.1| GENE 5 4159 - 4446 188 95 aa, chain - ## HITS:1 COG:STM0300 KEGG:ns NR:ns ## COG: STM0300 COG3121 # Protein_GI_number: 16763683 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Salmonella typhimurium LT2 # 1 89 144 232 237 91 44.0 3e-19 MFVRPSSVKGHPEDVAGEVKWQRVNNKLKGVNPTPFYINLSELRVGGEEISEHHYIAPFS SFEYPIPVSKSSKVQWKIVTDYGGVSEFFETDINL Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:08 2011 Seq name: gi|223713500|gb|ACDM01000098.1| Escherichia sp. 4_1_40B cont1.98, whole genome shotgun sequence Length of sequence - 9710 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 + CDS 618 - 809 141 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 853 - 1230 320 ## COG2801 Transposase and inactivated derivatives 3 2 Tu 1 . - CDS 1302 - 2228 652 ## ECO26_p1-53 conserved predicted protein - Prom 2424 - 2483 4.7 + Prom 2385 - 2444 6.1 4 3 Op 1 . + CDS 2479 - 2727 342 ## SeHA_A0038 protein ImpC 5 3 Op 2 4/0.000 + CDS 2724 - 3161 242 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 6 3 Op 3 . + CDS 3161 - 4405 483 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Term 4476 - 4523 -0.9 7 4 Op 1 . - CDS 4437 - 4829 163 ## E2348_P1_101 plasmid stability protein 8 4 Op 2 . - CDS 4834 - 5805 545 ## p1ECUMN_0151 plasmid segregation protein - Prom 5959 - 6018 5.1 + Prom 6309 - 6368 2.2 9 5 Op 1 . + CDS 6415 - 6678 249 ## p1ECUMN_0152 hypothetical protein 10 5 Op 2 . + CDS 6672 - 6947 210 ## p1ECUMN_0153 conserved hypothetical protein, putative helix-turn-helix protein + Term 7017 - 7052 1.0 - Term 6925 - 6970 -0.8 11 6 Op 1 . - CDS 7085 - 7894 376 ## COG0582 Integrase 12 6 Op 2 . - CDS 7895 - 8200 352 ## ECSE_P2-0011 plasmid maintenance protein CcdB 13 6 Op 3 . - CDS 8202 - 8420 294 ## COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid - Prom 8527 - 8586 10.1 + Prom 8885 - 8944 4.3 14 7 Op 1 . + CDS 9014 - 9244 220 ## KPN_pKPN4p07074 virulence-associated protein 15 7 Op 2 . + CDS 9298 - 9669 413 ## COG1487 Predicted nucleic acid-binding protein, contains PIN domain Predicted protein(s) >gi|223713500|gb|ACDM01000098.1| GENE 1 618 - 809 141 63 aa, chain + ## HITS:1 COG:ECs1208 KEGG:ns NR:ns ## COG: ECs1208 COG2801 # Protein_GI_number: 15830462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 58 91 148 296 114 96.0 5e-26 MAVMGLAGVLRGKKVRTTVSRKTVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYSG VHH >gi|223713500|gb|ACDM01000098.1| GENE 2 853 - 1230 320 125 aa, chain + ## HITS:1 COG:ECs1666 KEGG:ns NR:ns ## COG: ECs1666 COG2801 # Protein_GI_number: 15830920 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 121 169 289 296 224 96.0 3e-59 METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAKLLASTGSTGDSYDNA MAESINGLYKAEVIHRKSWKKRAEVELATLTWVDWYNNRRLLERLSHTPPAEAEKAYYAS IHWKR >gi|223713500|gb|ACDM01000098.1| GENE 3 1302 - 2228 652 308 aa, chain - ## HITS:1 COG:no KEGG:ECO26_p1-53 NR:ns ## KEGG: ECO26_p1-53 # Name: not_defined # Def: conserved predicted protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 1 308 1 308 308 603 96.0 1e-171 MPNWCSNRMYFSGEPAQIAEIKRLASGAVTPLYRRATNEGIQLFLAGSAGLLQTTEDVRF EPCPGLTAAGRGVVSPENIAFTRWLKHLQDGVLLDEQNCLMLHELWLQSGTGQRRWEGLP DDVRDTITVLFTAKRGDWCGFWSNEDVSVWWNRLCDNVLSEKTMPFDLLTVLPTRLDVEV NGFNGGVLNGVPSAYHWYTEQYGVKWPVGYEVNISSQGDNFIQVDFDTPWCQPESDVIAE LSRRFSCTLEHWYAEQGCNFCGWQLYERGEFVDVLWGELEWSSPTDDDELPEVTGPAWIV YKVAHYGG >gi|223713500|gb|ACDM01000098.1| GENE 4 2479 - 2727 342 82 aa, chain + ## HITS:1 COG:no KEGG:SeHA_A0038 NR:ns ## KEGG: SeHA_A0038 # Name: not_defined # Def: protein ImpC # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 82 1 82 82 148 100.0 6e-35 MIRIEILFDRQSTKNLKSGTLQALQNEIEQRLKPHYPEIWLRIDQGSAPSVSVTGARNDK DKERILSLLEEIWQDDSWLPAA >gi|223713500|gb|ACDM01000098.1| GENE 5 2724 - 3161 242 145 aa, chain + ## HITS:1 COG:PSLT055 KEGG:ns NR:ns ## COG: PSLT055 COG1974 # Protein_GI_number: 17233502 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Salmonella typhimurium LT2 # 20 142 17 137 140 171 67.0 6e-43 MSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRA SGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRLTLEPVSDSPEF RTLYPENICIFGVVTHVIHRTRELR >gi|223713500|gb|ACDM01000098.1| GENE 6 3161 - 4405 483 414 aa, chain + ## HITS:1 COG:PSLT054 KEGG:ns NR:ns ## COG: PSLT054 COG0389 # Protein_GI_number: 17233501 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Salmonella typhimurium LT2 # 1 414 1 414 424 620 71.0 1e-177 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQ TRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFG HQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQ PVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEE APPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAV KEPCYSNAAVEKLSLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPG LFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKQEMLSPSYTTQ >gi|223713500|gb|ACDM01000098.1| GENE 7 4437 - 4829 163 130 aa, chain - ## HITS:1 COG:no KEGG:E2348_P1_101 NR:ns ## KEGG: E2348_P1_101 # Name: stbB # Def: plasmid stability protein # Organism: E.coli_0127 # Pathway: not_defined # 1 130 1 130 130 230 99.0 9e-60 MDDERKRKKYTLYLHPEKAADFQTLEAIESVPRSERGELFRNAFISGMALHQLDPRLPVL LTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVLTELGASQSAEKMPPSATDSVQEAMN DVRLKMKKLF >gi|223713500|gb|ACDM01000098.1| GENE 8 4834 - 5805 545 323 aa, chain - ## HITS:1 COG:no KEGG:p1ECUMN_0151 NR:ns ## KEGG: p1ECUMN_0151 # Name: parM # Def: plasmid segregation protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 323 1 323 323 648 99.0 0 MNVYCDDGSTTIKLAWNDNGEICKSLSQNSFRHGWKVDGLGIRQTFNYELDGKKYTYDEV SNQSILTTHIEYQYTDVNLLAVHHALLNSGLAPQPVSLTVTLPISEFYTKECQKNELNIQ RKIENLMRPIRLNKGDVFTIEHVDVMPESLPAVFSRLVVDKVGQFEKSLVVDIGGTTLDV GVIVGQFDSVSAIHGNSGIGVSSVTKAAMSALRMASSDTSFLVADELIKRRNDPDFVRQV INDETKTDLVLNTIEGAIASLGEQVVNELGDFHHVNRVYVVGGGAPLIYDSIKTAWHHLG QKVVMMESPQTALVEAIAAFKEE >gi|223713500|gb|ACDM01000098.1| GENE 9 6415 - 6678 249 87 aa, chain + ## HITS:1 COG:no KEGG:p1ECUMN_0152 NR:ns ## KEGG: p1ECUMN_0152 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 87 128 214 214 186 100.0 3e-46 MRNLNPELKVYCLQSMATTNPVLRGNERKEFLEYLEEFPTIQVLDSVICFRKVYRDCMSN GTGVVETNNTAAKAEIEHLMNEVFGPW >gi|223713500|gb|ACDM01000098.1| GENE 10 6672 - 6947 210 91 aa, chain + ## HITS:1 COG:no KEGG:p1ECUMN_0153 NR:ns ## KEGG: p1ECUMN_0153 # Name: not_defined # Def: conserved hypothetical protein, putative helix-turn-helix protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 91 1 91 91 144 100.0 1e-33 MVKKPSQQALNRAAVTVEQAEALAQRLADKPYGAPEKPEPEKQCRTTISLGESMLVTIED LALRNKRNGKDPKNVSAIVRVALEQYLKTLT >gi|223713500|gb|ACDM01000098.1| GENE 11 7085 - 7894 376 269 aa, chain - ## HITS:1 COG:PSLT031 KEGG:ns NR:ns ## COG: PSLT031 COG0582 # Protein_GI_number: 17233417 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 10 265 2 257 260 386 84.0 1e-107 MSGSVIHSQSAARVPAVYSAGQSPQLPVVIDYPAALALRQMSMVHDELPKYLLAPEVSAL LHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAG RTPAGQQTHRLVPLSDSWYVSQLQTMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRTW IGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV FALDVAARHRVQFSMPESDAVTMLKNRHA >gi|223713500|gb|ACDM01000098.1| GENE 12 7895 - 8200 352 101 aa, chain - ## HITS:1 COG:no KEGG:ECSE_P2-0011 NR:ns ## KEGG: ECSE_P2-0011 # Name: not_defined # Def: plasmid maintenance protein CcdB # Organism: E.coli_SE11 # Pathway: not_defined # 1 101 10 110 110 196 100.0 2e-49 MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHVGDES WRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI >gi|223713500|gb|ACDM01000098.1| GENE 13 8202 - 8420 294 72 aa, chain - ## HITS:1 COG:PSLT027 KEGG:ns NR:ns ## COG: PSLT027 COG5302 # Protein_GI_number: 17233413 # Func_class: R General function prediction only # Function: Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid # Organism: Salmonella typhimurium LT2 # 1 72 1 72 72 110 90.0 7e-25 MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIE MNGSFADENRDW >gi|223713500|gb|ACDM01000098.1| GENE 14 9014 - 9244 220 76 aa, chain + ## HITS:1 COG:no KEGG:KPN_pKPN4p07074 NR:ns ## KEGG: KPN_pKPN4p07074 # Name: vagC # Def: virulence-associated protein # Organism: K.pneumoniae # Pathway: not_defined # 1 76 1 76 76 129 92.0 4e-29 MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWSSFAALEKADADF MAEREDIVSDEGRFDL >gi|223713500|gb|ACDM01000098.1| GENE 15 9298 - 9669 413 123 aa, chain + ## HITS:1 COG:PSLT106 KEGG:ns NR:ns ## COG: PSLT106 COG1487 # Protein_GI_number: 17233504 # Func_class: R General function prediction only # Function: Predicted nucleic acid-binding protein, contains PIN domain # Organism: Salmonella typhimurium LT2 # 1 121 15 131 132 90 40.0 6e-19 MREQPAAVIKRLEQAVLRNHRIVVSAITYAEMRFGATGPKASPRHIALVDAFCARLDAIL PWDRAAVDATTEIKMALRLAGTPIVPNDTAIAGHAIAAGAILVTNNTREFERVPDLVLED WVK Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:30 2011 Seq name: gi|223713499|gb|ACDM01000099.1| Escherichia sp. 4_1_40B cont1.99, whole genome shotgun sequence Length of sequence - 4317 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 214 - 273 2.8 1 1 Op 1 6/1.000 + CDS 296 - 1324 819 ## COG0812 UDP-N-acetylmuramate dehydrogenase 2 1 Op 2 . + CDS 1321 - 2286 802 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Term 2279 - 2308 0.4 3 2 Tu 1 . - CDS 2315 - 3241 847 ## COG1072 Panthothenate kinase - Prom 3432 - 3491 3.2 4 3 Tu 1 . + CDS 3248 - 3442 70 ## EcSMS35_4423 hypothetical protein + TRNA 3627 - 3702 91.8 # Thr TGT 0 0 + TRNA 3711 - 3795 67.6 # Tyr GTA 0 0 + TRNA 3912 - 3986 64.8 # Gly TCC 0 0 + TRNA 3993 - 4068 94.8 # Thr GGT 0 0 + Prom 4013 - 4072 60.4 5 4 Tu 1 . + CDS 4183 - 4317 180 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|223713499|gb|ACDM01000099.1| GENE 1 296 - 1324 819 342 aa, chain + ## HITS:1 COG:murB KEGG:ns NR:ns ## COG: murB COG0812 # Protein_GI_number: 16131806 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Escherichia coli K12 # 1 342 1 342 342 716 100.0 0 MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRG TVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQ NIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRL PKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAET AKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKS EDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS >gi|223713499|gb|ACDM01000099.1| GENE 2 1321 - 2286 802 321 aa, chain + ## HITS:1 COG:ECs4900_2 KEGG:ns NR:ns ## COG: ECs4900_2 COG0340 # Protein_GI_number: 15834154 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Escherichia coli O157:H7 # 77 321 1 245 245 468 99.0 1e-132 MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL PEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRG RKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQ DRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAA MLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLL EQDGIIKPWMGGEISLRSAEK >gi|223713499|gb|ACDM01000099.1| GENE 3 2315 - 3241 847 308 aa, chain - ## HITS:1 COG:ZcoaA KEGG:ns NR:ns ## COG: ZcoaA COG1072 # Protein_GI_number: 15804568 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Escherichia coli O157:H7 EDL933 # 1 308 1 308 308 623 100.0 1e-178 MTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISS NLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG FLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDK TVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR EGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHA VEEVRLRK >gi|223713499|gb|ACDM01000099.1| GENE 4 3248 - 3442 70 64 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_4423 NR:ns ## KEGG: EcSMS35_4423 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 64 1 64 64 120 98.0 2e-26 MLFYTHKHVSGGHSSIGKAIFAMARHSSVEWVNGQEGNTRWGGIIRKNLCQEAIVEKQCD RYSI >gi|223713499|gb|ACDM01000099.1| GENE 5 4183 - 4317 180 45 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 44 1 44 407 73 75 2e-13 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:44 2011 Seq name: gi|223713498|gb|ACDM01000100.1| Escherichia sp. 4_1_40B cont1.100, whole genome shotgun sequence Length of sequence - 30732 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 11, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 110 - 169 6.0 1 1 Op 1 46/0.000 + CDS 249 - 632 482 ## COG0690 Preprotein translocase subunit SecE 2 1 Op 2 45/0.000 + CDS 634 - 1179 683 ## COG0250 Transcription antiterminator + Term 1213 - 1265 10.2 + Prom 1187 - 1246 6.1 3 2 Op 1 55/0.000 + CDS 1338 - 1766 705 ## PROTEIN SUPPORTED gi|15804573|ref|NP_290614.1| 50S ribosomal protein L11 4 2 Op 2 43/0.000 + CDS 1770 - 2474 1148 ## PROTEIN SUPPORTED gi|15804574|ref|NP_290615.1| 50S ribosomal protein L1 5 2 Op 3 47/0.000 + CDS 2887 - 3384 798 ## PROTEIN SUPPORTED gi|15804575|ref|NP_290616.1| 50S ribosomal protein L10 6 2 Op 4 28/0.000 + CDS 3451 - 3816 562 ## PROTEIN SUPPORTED gi|15804576|ref|NP_290617.1| 50S ribosomal protein L7/L12 + Term 3827 - 3875 8.6 + Prom 3920 - 3979 2.6 7 3 Op 1 58/0.000 + CDS 4136 - 8164 4095 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 + Term 8184 - 8223 8.9 8 3 Op 2 . + CDS 8241 - 12464 4852 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 12491 - 12516 -0.5 + Prom 12495 - 12554 4.2 9 4 Tu 1 . + CDS 12677 - 13216 179 ## B21_03818 hypothetical protein + Term 13351 - 13391 5.6 - Term 13469 - 13513 4.3 10 5 Op 1 5/0.333 - CDS 13626 - 14759 1044 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 11 5 Op 2 16/0.000 - CDS 14756 - 15526 726 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 12 5 Op 3 5/0.333 - CDS 15528 - 15728 216 ## COG2104 Sulfur transfer protein involved in thiamine biosynthesis 13 5 Op 4 3/0.667 - CDS 15712 - 16467 737 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 14 5 Op 5 8/0.000 - CDS 16460 - 17095 647 ## COG0352 Thiamine monophosphate synthase 15 5 Op 6 4/0.667 - CDS 17095 - 18990 1973 ## COG0422 Thiamine biosynthesis protein ThiC - Prom 19160 - 19219 3.5 - Term 19160 - 19188 -0.7 16 6 Tu 1 . - CDS 19223 - 19699 466 ## COG3160 Regulator of sigma D - Prom 19753 - 19812 3.2 + Prom 19516 - 19575 2.8 17 7 Op 1 5/0.333 + CDS 19794 - 20567 557 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 18 7 Op 2 4/0.667 + CDS 20607 - 21671 1234 ## COG0407 Uroporphyrinogen-III decarboxylase 19 7 Op 3 4/0.667 + CDS 21681 - 22352 575 ## COG1515 Deoxyinosine 3'endonuclease (endonuclease V) 20 7 Op 4 6/0.000 + CDS 22395 - 22985 618 ## COG3068 Uncharacterized protein conserved in bacteria + Prom 23008 - 23067 1.8 21 7 Op 5 . + CDS 23172 - 23444 426 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 23472 - 23505 3.8 22 8 Tu 1 . + CDS 23517 - 24152 430 ## c4958 hypothetical protein + Term 24382 - 24416 -0.7 23 9 Tu 1 . - CDS 24154 - 24579 368 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein - Prom 24657 - 24716 2.0 + Prom 24608 - 24667 3.5 24 10 Op 1 13/0.000 + CDS 24826 - 26214 1219 ## COG0642 Signal transduction histidine kinase 25 10 Op 2 . + CDS 26211 - 27536 1323 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - Term 27448 - 27487 1.1 26 11 Op 1 17/0.000 - CDS 27533 - 28822 1628 ## COG0151 Phosphoribosylamine-glycine ligase 27 11 Op 2 . - CDS 28834 - 30423 1843 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) - Prom 30518 - 30577 3.6 Predicted protein(s) >gi|223713498|gb|ACDM01000100.1| GENE 1 249 - 632 482 127 aa, chain + ## HITS:1 COG:STM4147 KEGG:ns NR:ns ## COG: STM4147 COG0690 # Protein_GI_number: 16767401 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Salmonella typhimurium LT2 # 1 127 1 127 127 184 96.0 4e-47 MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVAL LTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVS FITGLRF >gi|223713498|gb|ACDM01000100.1| GENE 2 634 - 1179 683 181 aa, chain + ## HITS:1 COG:ECs4905 KEGG:ns NR:ns ## COG: ECs4905 COG0250 # Protein_GI_number: 15834159 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Escherichia coli O157:H7 # 1 181 1 181 181 348 100.0 3e-96 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK A >gi|223713498|gb|ACDM01000100.1| GENE 3 1338 - 1766 705 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804573|ref|NP_290614.1| 50S ribosomal protein L11 [Escherichia coli O157:H7 EDL933] # 1 142 1 142 142 276 100 1e-73 MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVIT VYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGA DIEAMTRSIEGTARSMGLVVED >gi|223713498|gb|ACDM01000100.1| GENE 4 1770 - 2474 1148 234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804574|ref|NP_290615.1| 50S ribosomal protein L1 [Escherichia coli O157:H7 EDL933] # 1 234 1 234 234 446 100 1e-125 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVR GATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDA MRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDF DADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN >gi|223713498|gb|ACDM01000100.1| GENE 5 2887 - 3384 798 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804575|ref|NP_290616.1| 50S ribosomal protein L10 [Escherichia coli O157:H7 EDL933] # 1 165 1 165 165 311 100 2e-84 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLL RRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPA SQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA >gi|223713498|gb|ACDM01000100.1| GENE 6 3451 - 3816 562 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804576|ref|NP_290617.1| 50S ribosomal protein L7/L12 [Escherichia coli O157:H7 EDL933] # 1 121 1 121 121 221 100 6e-57 MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTEFDVILK AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV K >gi|223713498|gb|ACDM01000100.1| GENE 7 4136 - 8164 4095 1342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 2 1342 6 1390 1392 1582 58 0.0 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE >gi|223713498|gb|ACDM01000100.1| GENE 8 8241 - 12464 4852 1407 aa, chain + ## HITS:1 COG:ECs4911 KEGG:ns NR:ns ## COG: ECs4911 COG0086 # Protein_GI_number: 15834165 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Escherichia coli O157:H7 # 1 1407 1 1407 1407 2776 100.0 0 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA APQVTAEDASASLAELLNAGLGGSDNE >gi|223713498|gb|ACDM01000100.1| GENE 9 12677 - 13216 179 179 aa, chain + ## HITS:1 COG:no KEGG:B21_03818 NR:ns ## KEGG: B21_03818 # Name: htrC # Def: hypothetical protein # Organism: E.coli_BL21 # Pathway: not_defined # 1 179 1 179 179 347 100.0 1e-94 MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYRFWVTYSLHCFTKDYEH QTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPESNVIHAGYGSYAVIEVDLD GGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVKFFTIAYNLLRNKQLPQPSK >gi|223713498|gb|ACDM01000100.1| GENE 10 13626 - 14759 1044 377 aa, chain - ## HITS:1 COG:thiH KEGG:ns NR:ns ## COG: thiH COG1060 # Protein_GI_number: 16131820 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Escherichia coli K12 # 1 377 1 377 377 764 100.0 0 MKTFSDRWRQLDWDDIRLRINGKTAADVERALNASQLTRDDMMALLSPAASGYLEQLAQR AQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEADIARESAAIREM GFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQPLAETEYAELKQLGLDGVMV YQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGIDKIGLGALIGLSDNWRVDSYMVA EHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMDERQLVQTICAFRLLAPEIELSLST RESPWFRDRVIPLAINNVSAFSKTQPGGYADNHPELEQFSPHDDRRPEAVAAALTAQGLQ PVWKDWDSYLGRASQRL >gi|223713498|gb|ACDM01000100.1| GENE 11 14756 - 15526 726 256 aa, chain - ## HITS:1 COG:thiG KEGG:ns NR:ns ## COG: thiG COG2022 # Protein_GI_number: 16131821 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Escherichia coli K12 # 1 256 26 281 281 473 100.0 1e-133 MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIA AGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLV QQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVV DAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAKAFRLAVEAGLLARQSGPGSRSY FAHATSPLTGFLEASA >gi|223713498|gb|ACDM01000100.1| GENE 12 15528 - 15728 216 66 aa, chain - ## HITS:1 COG:thiS KEGG:ns NR:ns ## COG: thiS COG2104 # Protein_GI_number: 16132237 # Func_class: H Coenzyme transport and metabolism # Function: Sulfur transfer protein involved in thiamine biosynthesis # Organism: Escherichia coli K12 # 1 66 1 66 66 91 100.0 4e-19 MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLF QVIAGG >gi|223713498|gb|ACDM01000100.1| GENE 13 15712 - 16467 737 251 aa, chain - ## HITS:1 COG:thiF KEGG:ns NR:ns ## COG: thiF COG0476 # Protein_GI_number: 16131822 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Escherichia coli K12 # 7 251 1 245 245 444 100.0 1e-125 MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD DDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARAD VVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEP ERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGC PVCGGSNADPV >gi|223713498|gb|ACDM01000100.1| GENE 14 16460 - 17095 647 211 aa, chain - ## HITS:1 COG:thiE KEGG:ns NR:ns ## COG: thiE COG0352 # Protein_GI_number: 16131823 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Escherichia coli K12 # 1 211 1 211 211 395 100.0 1e-110 MYQPDFPPVPFRSGLYPVVDSVQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGR RYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAGLRLGVSTHDDMEIDVALA ARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYPTVAIGGISLARAPAVIATGV GSIAVVSAITQAADWRLATAQLLEIAGVGDE >gi|223713498|gb|ACDM01000100.1| GENE 15 17095 - 18990 1973 631 aa, chain - ## HITS:1 COG:thiC KEGG:ns NR:ns ## COG: thiC COG0422 # Protein_GI_number: 16131824 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Escherichia coli K12 # 1 631 1 631 631 1313 100.0 0 MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYITGTHPGVRVPMREIQLSPTLIGGSK EQPQYEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWIDARGDTEELTVRSSDYTKA RLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITPEMEFIAIRENMGRERIRSEV LRHQHPGMSFGAHLPENITAEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANI GNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQAL EKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMA KWCLSHHQENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGELT KIAWEYDVQVMIEGPGHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTSGI GAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDNAM SKARFEFRWEDQFNLALDPFTARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRDY AATQTIEMGMADMSENFRARGGEIYLRKEEA >gi|223713498|gb|ACDM01000100.1| GENE 16 19223 - 19699 466 158 aa, chain - ## HITS:1 COG:ECs4918 KEGG:ns NR:ns ## COG: ECs4918 COG3160 # Protein_GI_number: 15834172 # Func_class: K Transcription # Function: Regulator of sigma D # Organism: Escherichia coli O157:H7 # 1 158 1 158 158 305 100.0 3e-83 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA >gi|223713498|gb|ACDM01000100.1| GENE 17 19794 - 20567 557 257 aa, chain + ## HITS:1 COG:yjaD KEGG:ns NR:ns ## COG: yjaD COG2816 # Protein_GI_number: 16131826 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Escherichia coli K12 # 1 257 1 257 257 531 99.0 1e-151 MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQ RRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCR ERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG IKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTV ARRLIEDTVAMCRAEYE >gi|223713498|gb|ACDM01000100.1| GENE 18 20607 - 21671 1234 354 aa, chain + ## HITS:1 COG:hemE KEGG:ns NR:ns ## COG: hemE COG0407 # Protein_GI_number: 16131827 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Escherichia coli K12 # 1 354 1 354 354 736 100.0 0 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVT LQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDE LGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA LLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAP PARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR >gi|223713498|gb|ACDM01000100.1| GENE 19 21681 - 22352 575 223 aa, chain + ## HITS:1 COG:nfi KEGG:ns NR:ns ## COG: nfi COG1515 # Protein_GI_number: 16131828 # Func_class: L Replication, recombination and repair # Function: Deoxyinosine 3'endonuclease (endonuclease V) # Organism: Escherichia coli K12 # 1 223 3 225 225 442 100.0 1e-124 MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEVTRAAMVLLKYPSLELV EYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFVDGHGISHPRRLGVASHFG LLVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLAWVWRSKARCNPLFIATGHRV SVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRYTANQP >gi|223713498|gb|ACDM01000100.1| GENE 20 22395 - 22985 618 196 aa, chain + ## HITS:1 COG:yjaG KEGG:ns NR:ns ## COG: yjaG COG3068 # Protein_GI_number: 16131829 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 196 1 196 196 383 99.0 1e-106 MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGDGQIYRRILDLIWETLT VKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSELVHSRLSGETLEHAVEVS KTSITTVAMLEMTQAGREMSDEELKENPAVEQEWDIQWEIFRLLAECEERDIELIKGLRA DLREAGESNVGIIFQQ >gi|223713498|gb|ACDM01000100.1| GENE 21 23172 - 23444 426 90 aa, chain + ## HITS:1 COG:STM4170 KEGG:ns NR:ns ## COG: STM4170 COG0776 # Protein_GI_number: 16767424 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Salmonella typhimurium LT2 # 1 90 1 90 90 135 98.0 1e-32 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG RNPQTGKEIKIAAANVPAFVSGKALKDAVK >gi|223713498|gb|ACDM01000100.1| GENE 22 23517 - 24152 430 211 aa, chain + ## HITS:1 COG:no KEGG:c4958 NR:ns ## KEGG: c4958 # Name: yjaH # Def: hypothetical protein # Organism: E.coli_CFT073 # Pathway: not_defined # 1 211 23 233 233 416 99.0 1e-115 MLAGALLLTACSHNSSLPPFTASGFAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTR EYRWQGDNLTLININVYSKPPVNIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRA DQIRQISDALRQGRVVLRQGRWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDV SVAWLEAPEGSQLLLVANSDFCRWQPNEKTF >gi|223713498|gb|ACDM01000100.1| GENE 23 24154 - 24579 368 141 aa, chain - ## HITS:1 COG:ECs4925 KEGG:ns NR:ns ## COG: ECs4925 COG3678 # Protein_GI_number: 15834179 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli O157:H7 # 1 141 48 188 188 219 100.0 1e-57 MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQQTAWQKIHNDFYAQSS ALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIPRG AGMGMGYGGCGGGGHMGMGHW >gi|223713498|gb|ACDM01000100.1| GENE 24 24826 - 26214 1219 462 aa, chain + ## HITS:1 COG:hydH KEGG:ns NR:ns ## COG: hydH COG0642 # Protein_GI_number: 16131833 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 462 4 465 465 899 100.0 0 MQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRASEADRQALLEKGNVLIRALESG SRVGMGMRMHHVQQQALLEEMAGQPGVLWFAVTDAQGIIILHSDPDKVGRALYSPDEMQK LKPEENSRWRLLGKTETTPALEVYRLFQPMSAPWRHGMHNMPRCNGKAVPQVDAQQAIFI AVDASDLVATQSGEKRNTLIILFALATVLLASVLSFFWYRRYLRSRQLLQDEMKRKEKLV ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLE LVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLN LYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLDAIFTPYFTTKAEGTGLG LAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVNITRKDPQG >gi|223713498|gb|ACDM01000100.1| GENE 25 26211 - 27536 1323 441 aa, chain + ## HITS:1 COG:hydG KEGG:ns NR:ns ## COG: hydG COG2204 # Protein_GI_number: 16131834 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 1 441 1 441 441 837 100.0 0 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN KTEAARQLGITRKTLLAKLSR >gi|223713498|gb|ACDM01000100.1| GENE 26 27533 - 28822 1628 429 aa, chain - ## HITS:1 COG:purD KEGG:ns NR:ns ## COG: purD COG0151 # Protein_GI_number: 16131835 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Escherichia coli K12 # 1 429 1 429 429 853 99.0 0 MKVLVIGNGGREHALAWKAVQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFA QNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTA EYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDA GHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVT DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDPETQPIM LRMKSDLVELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVA GGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIG WRAIEREQN >gi|223713498|gb|ACDM01000100.1| GENE 27 28834 - 30423 1843 529 aa, chain - ## HITS:1 COG:purH KEGG:ns NR:ns ## COG: purH COG0138 # Protein_GI_number: 16131836 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Escherichia coli K12 # 1 529 1 529 529 1033 100.0 0 MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLLAEKGLPVTEVSDYTGF PEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVVVNLYPFAQTVAREGCSLE DAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEMDDNEGSLTLATRFDLAIKAF EHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNLNFIKKLDMRYGENSHQQAAFYI EENVKEASVATATQVQGKALSYNNIADTDAALECVKEFAEPACVIVKHANPCGVAIGNSI LDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAIISRQFVEVIIAPSASEEALKITAAKQ NVRVLTCGQWGERVPGLDFKRVNGGLLVQDRDLGMVGAEELRVVTKRQPSEQELRDALFC WKVAKFVKSNAIVYAKNNMTIGIGAGQMSRVYSAKIAGIKAADEGLEVKGSSMASDAFFP FRDGIDAAAAAGVTCVIQPGGSIRDDEVIAAADEHGIAMLFTDMRHFRH Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:52 2011 Seq name: gi|223713497|gb|ACDM01000101.1| Escherichia sp. 4_1_40B cont1.101, whole genome shotgun sequence Length of sequence - 1190 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 1190 99.0 # CP000800 [D:227600..230523] # 23S ribosomal RNA # Escherichia coli E24377A # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:53 2011 Seq name: gi|223713496|gb|ACDM01000102.1| Escherichia sp. 4_1_40B cont1.102, whole genome shotgun sequence Length of sequence - 1869 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 1688 99.0 # CP000946 [R:4420328..4423307] # 23S ribosomal RNA # Escherichia coli ATCC 8739 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. + 5S_RRNA 1769 - 1869 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:54 2011 Seq name: gi|223713495|gb|ACDM01000103.1| Escherichia sp. 4_1_40B cont1.103, whole genome shotgun sequence Length of sequence - 2265 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 923 136 ## COG3436 Transposase and inactivated derivatives + Term 1159 - 1198 1.1 2 2 Tu 1 . - CDS 1033 - 2166 319 ## COG3547 Transposase and inactivated derivatives - Prom 2194 - 2253 2.3 Predicted protein(s) >gi|223713495|gb|ACDM01000103.1| GENE 1 3 - 923 136 306 aa, chain + ## HITS:1 COG:ECs1339 KEGG:ns NR:ns ## COG: ECs1339 COG3436 # Protein_GI_number: 15830593 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 259 217 475 537 442 84.0 1e-124 PLYRQSEIFARQGVELSRALLSNWVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLA PGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAG YDRLFSAEREGGALTEAGCWAHARRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLP VSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFCDDGLAE ADNNTAERALRAVCLGKKNSYDLCQILSPKRPYAAPGASLYRGLKNLKQSDCILDFTNSY SGILAP >gi|223713495|gb|ACDM01000103.1| GENE 2 1033 - 2166 319 377 aa, chain - ## HITS:1 COG:mll9195 KEGG:ns NR:ns ## COG: mll9195 COG3547 # Protein_GI_number: 13488118 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 8 364 7 363 369 338 48.0 1e-92 MHSENIAAYVGLDVHKETLAVAIAAPERLGEVRYYGTINNEAQAVRRLFQKLQGLYGNIL SCYEAGPCGFGLYHQLTAMNIKCQVIAPSRIPKSPTDRIKNDHRDAISLARLLRAGELTP VWIPDLTHEAMRDLIRARAAAKRDSRVARQRILSMLLRTDKHYAGKHWTGKHRTWLANQS FSQPSQQIAFQHYCQSLEQIEDRILQLDQEISRLLPEWSLCNLVCQLQALKGVGQLIAIT LVAELGDFSRFSNPKQLMAFLGLVPGEYSSGNSIRPRGITKVGNSELRRLLYEAAWSYRT PAKVGAWLIYYRPDSVTQYSKDIAWKAQQRLCSRYRSLTAKGKKSQVAITAVARELTGFM WDIALAAQSSFSQQKQN Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:55 2011 Seq name: gi|223713494|gb|ACDM01000104.1| Escherichia sp. 4_1_40B cont1.104, whole genome shotgun sequence Length of sequence - 1384 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 83 - 1382 652 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713494|gb|ACDM01000104.1| GENE 1 83 - 1382 652 433 aa, chain + ## HITS:1 COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 433 346 778 1411 840 100.0 0 MVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEA GLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASA FYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDAT GSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVK DTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIR LTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRL THRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEAL LWQHETRHAYNAQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:56 2011 Seq name: gi|223713493|gb|ACDM01000105.1| Escherichia sp. 4_1_40B cont1.105, whole genome shotgun sequence Length of sequence - 1343 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 58 - 1170 245 ## COG3385 FOG: Transposase and inactivated derivatives Predicted protein(s) >gi|223713493|gb|ACDM01000105.1| GENE 1 58 - 1170 245 370 aa, chain + ## HITS:1 COG:yi81 KEGG:ns NR:ns ## COG: yi81 COG3385 # Protein_GI_number: 16130326 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 370 3 372 372 728 100.0 0 MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREV TAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAIS APGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECI RSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGA PFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQ VADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFP PRSAGSEKKN Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:57 2011 Seq name: gi|223713492|gb|ACDM01000106.1| Escherichia sp. 4_1_40B cont1.106, whole genome shotgun sequence Length of sequence - 1230 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 - CDS 30 - 896 272 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 893 - 1192 288 ## COG2963 Transposase and inactivated derivatives Predicted protein(s) >gi|223713492|gb|ACDM01000106.1| GENE 1 30 - 896 272 288 aa, chain - ## HITS:1 COG:tra5_g1 KEGG:ns NR:ns ## COG: tra5_g1 COG2801 # Protein_GI_number: 16128357 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 288 1 288 288 578 100.0 1e-165 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRS KQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLE QDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA LWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVE CIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >gi|223713492|gb|ACDM01000106.1| GENE 2 893 - 1192 288 99 aa, chain - ## HITS:1 COG:b0298 KEGG:ns NR:ns ## COG: b0298 COG2963 # Protein_GI_number: 16128283 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 99 4 102 102 114 100.0 6e-26 MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSS ERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:57 2011 Seq name: gi|223713491|gb|ACDM01000107.1| Escherichia sp. 4_1_40B cont1.107, whole genome shotgun sequence Length of sequence - 1222 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 181 - 1215 267 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|223713491|gb|ACDM01000107.1| GENE 1 181 - 1215 267 344 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 19 339 11 317 317 107 31 5e-24 MLRDTGGIKPHEHKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNR GRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQ KTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIH ERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKF LSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPK KTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:58 2011 Seq name: gi|223713490|gb|ACDM01000108.1| Escherichia sp. 4_1_40B cont1.108, whole genome shotgun sequence Length of sequence - 1132 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1132 1239 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins Predicted protein(s) >gi|223713490|gb|ACDM01000108.1| GENE 1 1 - 1132 1239 377 aa, chain - ## HITS:1 COG:ECs2098 KEGG:ns NR:ns ## COG: ECs2098 COG0076 # Protein_GI_number: 15831352 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Escherichia coli O157:H7 # 1 377 82 458 466 811 99.0 0 ENWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW RKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK LKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDY KASLKYLSDHPKLQGIA Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:59 2011 Seq name: gi|223713489|gb|ACDM01000109.1| Escherichia sp. 4_1_40B cont1.109, whole genome shotgun sequence Length of sequence - 1031 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1029 1443 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|223713489|gb|ACDM01000109.1| GENE 1 1 - 1029 1443 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 343 46 401 407 560 77 1e-160 AFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILV VAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRG TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKRE EIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP EGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGV Prediction of potential genes in microbial genomes Time: Mon May 16 19:40:59 2011 Seq name: gi|223713488|gb|ACDM01000110.1| Escherichia sp. 4_1_40B cont1.110, whole genome shotgun sequence Length of sequence - 1013 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 120 - 179 5.8 1 1 Tu 1 . + CDS 429 - 860 117 ## COG0500 SAM-dependent methyltransferases Predicted protein(s) >gi|223713488|gb|ACDM01000110.1| GENE 1 429 - 860 117 143 aa, chain + ## HITS:1 COG:Z1925 KEGG:ns NR:ns ## COG: Z1925 COG0500 # Protein_GI_number: 15801385 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 EDL933 # 1 143 80 222 222 288 100.0 3e-78 MDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKS CVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILS EHFENVKTKVQGTVVMFSASGKK Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:00 2011 Seq name: gi|223713487|gb|ACDM01000111.1| Escherichia sp. 4_1_40B cont1.111, whole genome shotgun sequence Length of sequence - 855 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 2 - 344 237 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 2 1 Op 2 . - CDS 347 - 775 465 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|223713487|gb|ACDM01000111.1| GENE 1 2 - 344 237 114 aa, chain - ## HITS:1 COG:ECs2856 KEGG:ns NR:ns ## COG: ECs2856 COG0494 # Protein_GI_number: 15832110 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 114 2 115 160 229 100.0 9e-61 MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVAEE >gi|223713487|gb|ACDM01000111.1| GENE 2 347 - 775 465 142 aa, chain - ## HITS:1 COG:ECs2857 KEGG:ns NR:ns ## COG: ECs2857 COG0451 # Protein_GI_number: 15832111 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 142 180 321 321 301 99.0 3e-82 MIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPM LSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEI SLEAGLASTYQWFLENQDRFRG Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:01 2011 Seq name: gi|223713486|gb|ACDM01000112.1| Escherichia sp. 4_1_40B cont1.112, whole genome shotgun sequence Length of sequence - 802 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 203 - 262 3.4 1 1 Tu 1 . + CDS 375 - 737 322 ## ECO103_0511 hypothetical protein Predicted protein(s) >gi|223713486|gb|ACDM01000112.1| GENE 1 375 - 737 322 120 aa, chain + ## HITS:1 COG:no KEGG:ECO103_0511 NR:ns ## KEGG: ECO103_0511 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 120 1 120 120 230 99.0 1e-59 MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLLRKFDALEAKCAALENKIIPVSAELPPAN ESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENFNITHWAVMPKAPEAGA Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:04 2011 Seq name: gi|223713485|gb|ACDM01000113.1| Escherichia sp. 4_1_40B cont1.113, whole genome shotgun sequence Length of sequence - 800 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 112 - 799 396 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713485|gb|ACDM01000113.1| GENE 1 112 - 799 396 229 aa, chain + ## HITS:1 COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 229 89 317 1411 470 99.0 1e-132 MGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAK LDEGHRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRV LTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGT EPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWT Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:05 2011 Seq name: gi|223713484|gb|ACDM01000114.1| Escherichia sp. 4_1_40B cont1.114, whole genome shotgun sequence Length of sequence - 789 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 788 273 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713484|gb|ACDM01000114.1| GENE 1 2 - 788 273 262 aa, chain + ## HITS:1 COG:rhsE KEGG:ns NR:ns ## COG: rhsE COG3209 # Protein_GI_number: 16129415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 262 147 408 682 520 100.0 1e-147 DNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDST LTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTR IQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTD TTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLD RLEEEIRADRVSSESRAWLAQC Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:05 2011 Seq name: gi|223713483|gb|ACDM01000115.1| Escherichia sp. 4_1_40B cont1.115, whole genome shotgun sequence Length of sequence - 777 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 + CDS 1 - 480 579 ## COG2301 Citrate lyase beta subunit 2 1 Op 2 . + CDS 491 - 776 264 ## COG3051 Citrate lyase, alpha subunit Predicted protein(s) >gi|223713483|gb|ACDM01000115.1| GENE 1 1 - 480 579 159 aa, chain + ## HITS:1 COG:citE KEGG:ns NR:ns ## COG: citE COG2301 # Protein_GI_number: 16128599 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Escherichia coli K12 # 1 159 149 307 307 270 100.0 8e-73 ITRAVEIAHASERLIGIALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDT VYSDANNEAGFLQEAAHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEA AAREGLGVVSLNGKMVDGPVIDRARLVLSRAELSGIREE >gi|223713483|gb|ACDM01000115.1| GENE 2 491 - 776 264 95 aa, chain + ## HITS:1 COG:citF KEGG:ns NR:ns ## COG: citF COG3051 # Protein_GI_number: 16128598 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Escherichia coli K12 # 1 95 1 95 510 198 100.0 2e-51 MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQ DGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTL Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:06 2011 Seq name: gi|223713482|gb|ACDM01000116.1| Escherichia sp. 4_1_40B cont1.116, whole genome shotgun sequence Length of sequence - 762 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 62 - 469 205 ## APECO1_1082 hypothetical protein + Term 647 - 691 1.5 Predicted protein(s) >gi|223713482|gb|ACDM01000116.1| GENE 1 62 - 469 205 135 aa, chain + ## HITS:1 COG:no KEGG:APECO1_1082 NR:ns ## KEGG: APECO1_1082 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 135 30 164 164 279 99.0 3e-74 MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQRGNDGQPPWFEHDQMTV AEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVMCDEDYEGEKCCPSCGTGV YSREGGQEGNWKDRN Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:11 2011 Seq name: gi|223713481|gb|ACDM01000117.1| Escherichia sp. 4_1_40B cont1.117, whole genome shotgun sequence Length of sequence - 727 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 727 100.0 # GQ047703 [D:1..1363] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:12 2011 Seq name: gi|223713480|gb|ACDM01000118.1| Escherichia sp. 4_1_40B cont1.118, whole genome shotgun sequence Length of sequence - 727 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 727 344 ## COG3209 Rhs family protein Predicted protein(s) >gi|223713480|gb|ACDM01000118.1| GENE 1 1 - 727 344 242 aa, chain + ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 242 902 1143 1397 479 99.0 1e-135 TTDPAGNRLPDPELHPDSALSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDD ERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRK PQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQS GGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPAR KI Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:13 2011 Seq name: gi|223713479|gb|ACDM01000119.1| Escherichia sp. 4_1_40B cont1.119, whole genome shotgun sequence Length of sequence - 711 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 + CDS 3 - 353 340 ## COG3053 Citrate lyase synthetase 2 1 Op 2 . + CDS 368 - 664 308 ## COG3052 Citrate lyase, gamma subunit Predicted protein(s) >gi|223713479|gb|ACDM01000119.1| GENE 1 3 - 353 340 116 aa, chain + ## HITS:1 COG:citC KEGG:ns NR:ns ## COG: citC COG3053 # Protein_GI_number: 16128601 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Escherichia coli K12 # 1 116 266 381 381 237 100.0 4e-63 TEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMRYWLETPTISAPPIELVEIER LRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQNLLEHSRQDAAARQKTPA >gi|223713479|gb|ACDM01000119.1| GENE 2 368 - 664 308 98 aa, chain + ## HITS:1 COG:ECs0656 KEGG:ns NR:ns ## COG: ECs0656 COG3052 # Protein_GI_number: 15829910 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Escherichia coli O157:H7 # 1 98 1 98 98 182 100.0 1e-46 MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILDVLARYNVRG VQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:13 2011 Seq name: gi|223713478|gb|ACDM01000120.1| Escherichia sp. 4_1_40B cont1.120, whole genome shotgun sequence Length of sequence - 682 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 593 468 ## COG1349 Transcriptional regulators of sugar metabolism Predicted protein(s) >gi|223713478|gb|ACDM01000120.1| GENE 1 2 - 593 468 197 aa, chain - ## HITS:1 COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 197 1 197 269 359 98.0 2e-99 MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQRI AVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVLLDSGTTTFE IARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHF DMLFLGVDAIDLERGVS Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:14 2011 Seq name: gi|223713477|gb|ACDM01000121.1| Escherichia sp. 4_1_40B cont1.121, whole genome shotgun sequence Length of sequence - 565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 328 162 ## ECB_01907 hypothetical protein Predicted protein(s) >gi|223713477|gb|ACDM01000121.1| GENE 1 1 - 328 162 109 aa, chain - ## HITS:1 COG:no KEGG:ECB_01907 NR:ns ## KEGG: ECB_01907 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 109 12 120 144 218 99.0 7e-56 MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQYETELPWFEHTDDRLTE HGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQCHHDYYGE Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:16 2011 Seq name: gi|223713476|gb|ACDM01000122.1| Escherichia sp. 4_1_40B cont1.122, whole genome shotgun sequence Length of sequence - 565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 463 194 ## COG5525 Bacteriophage tail assembly protein - Prom 487 - 546 2.0 Predicted protein(s) >gi|223713476|gb|ACDM01000122.1| GENE 1 1 - 463 194 154 aa, chain - ## HITS:1 COG:ybcX KEGG:ns NR:ns ## COG: ybcX COG5525 # Protein_GI_number: 16128544 # Func_class: R General function prediction only # Function: Bacteriophage tail assembly protein # Organism: Escherichia coli K12 # 58 151 106 201 247 60 35.0 1e-09 MKPVFDENGLATVPGNMRCFYYEAVTYEYTGWSDEYINTGVSMPACSTGIDPGEYIPGRV AVFTGKGWSHEEDHRNETVYSTENGAAVTVDYIGAIKDGYVTLSPLTPYDKWDGEKWVTD TEAQHSAALDAAEVKRQSLIDAAMASISLIQLKL Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:18 2011 Seq name: gi|223713475|gb|ACDM01000123.1| Escherichia sp. 4_1_40B cont1.123, whole genome shotgun sequence Length of sequence - 547 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 39 - 547 100.0 # CP000026 [D:293322..294867] # 16S ribosomal RNA # Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC # 9150 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella. Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:19 2011 Seq name: gi|223713474|gb|ACDM01000124.1| Escherichia sp. 4_1_40B cont1.124, whole genome shotgun sequence Length of sequence - 529 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 167 - 527 223 ## ECO111_3781 hypothetical protein Predicted protein(s) >gi|223713474|gb|ACDM01000124.1| GENE 1 167 - 527 223 120 aa, chain + ## HITS:1 COG:no KEGG:ECO111_3781 NR:ns ## KEGG: ECO111_3781 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 120 1 120 280 243 99.0 2e-63 MSDITISRPEVVTGHTDVICSTNIRHILAVRKSTLLQIDTLIRQLAEISAMTESIGGKAA PDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDAQARDTWYRSL Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:21 2011 Seq name: gi|223713473|gb|ACDM01000125.1| Escherichia sp. 4_1_40B cont1.125, whole genome shotgun sequence Length of sequence - 513 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 76 - 306 104 ## ECO103_3595 hypothetical protein - Prom 387 - 446 3.0 Predicted protein(s) >gi|223713473|gb|ACDM01000125.1| GENE 1 76 - 306 104 76 aa, chain - ## HITS:1 COG:no KEGG:ECO103_3595 NR:ns ## KEGG: ECO103_3595 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 76 205 280 280 160 100.0 1e-38 MLHLFSGKPIPDNRENITIRLDGHIQSVQGKERYEDEMFIIKYFKKGSAHITFKRLELID RINDIIARYFPSVLSA Prediction of potential genes in microbial genomes Time: Mon May 16 19:41:24 2011 Seq name: gi|223713472|gb|ACDM01000126.1| Escherichia sp. 4_1_40B cont1.126, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 1 - 181 107 ## COG3596 Predicted GTPase 2 1 Op 2 . - CDS 199 - 435 112 ## COG3596 Predicted GTPase Predicted protein(s) >gi|223713472|gb|ACDM01000126.1| GENE 1 1 - 181 107 60 aa, chain - ## HITS:1 COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1 60 86 145 290 126 100.0 9e-30 MVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQ >gi|223713472|gb|ACDM01000126.1| GENE 2 199 - 435 112 78 aa, chain - ## HITS:1 COG:ECs1395 KEGG:ns NR:ns ## COG: ECs1395 COG3596 # Protein_GI_number: 15830649 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli O157:H7 # 1 46 1 46 290 95 97.0 3e-20 MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKAGPVNPHSVMHCFRGR SPRSVMFTPAPGKCSASV